Citrus Sinensis ID: 047959

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
Protein Sequence
WRQIFSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEFVSSIFSEEESLSNVKRSKSDHLALIHCENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPELRQLLRAFEDMEWRKSQMVEASYIAAIWLSISTVISALIRSILFISAAFWGHYFEADLPPVMPW
Secondary Structure (PSIPRED)
cEEEcccccccccHHHHHHHcccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHcccEEEEEcccccEEEEEEEcHHHHHHHHHHHcccccEEEEcccccEEccEEEccEEEEEEEEEEcccccccEEEEEEEcccccccccccccccccccEEEccccccccccHHccccccccEEEEcccccccccHHHHccccccEEEEccccccccccccccccccccEEEEEccccccHHHHcccccccEEEEEccccccHHHHHHHHcccccccEEEEEcccccccccccccccccccccccEEEEEcEEccccccccccccccccEEEEEEcEEcccEEEEEcccccccccEEEEEcccccccEEEcccccccccccEEEcccccccccccccccccccEEEEEcccHHHHHHHHHccccccccccEEEEEEEcEEEEEEEHHHHHHHHHHEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcHHcccccccccEEEEEcccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHccEEEEEEccccccEEEEEHHHHHHHHHHHHHHHHccEEEEccccccccccEEEEEEEccHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHcEEcccccccHHccHHHHHHHHHHHEEccccccccccccccccHHHHHHEEEcccccHHHHHHHHHHHHHHEEEccccHccHHHHHHHHHHcHHHcEEEEcccccccccccccccccccccccEEEEEEccccccccHHHHHHcccccEEEEEcccccccEEEEEccccccccEEEEEcccccccEEEEcccccccccEEEEcccHHHHHcccHHHHHHHHHEEEEccccHHHHHHHcccccccEEEEEEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHccHccccccccccc
Coil and Loop (DISEMBL)
wrqifsvmelpfHLKVCCIYlcafppsieisTEQLYQLWVAegfipynseeTAKHYLKELIHRGFIqvskrrsggtikacyvpsiAYTSLALMARKTEFVSSIFSEeeslsnvkrsksdhLALIHCENFCKKFKHLRVLNLGsavldqyppglenlFYLKYLKlnipslkclpSLLCTLLnlqtlempssyidhspeDIWMMQKLMHlnfgsitlpappknnssplknLIFIsalhpssctpdilgrlpnvqtlrisgdlsyyhsgvskslcqlhKLECLKLVNEGKMRQLSRMILseykfppsltqlslsntelvedpmptleelphleVLKLKQNSYLERKlacvgcssfpqlkILHLKSMLWLEewtmgagampkleslilnpcaylrklpeeQWCIKSLCklelhwpqpELRQLLRAFEDMEWRKSQMVEASYIAAIWLSISTVISALIRSILFISAAFWghyfeadlppvmpw
Flexible Loop (DISEMBL)
WRQIFSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFiqvskrrsggtikaCYVPSIAYTSLALMARKTEFVSSIFSEEESLSNVKRSKSDHLALIHCENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPELRQLLRAFEDMEWRKSQMVEASYIAAIWLSISTVISALIRSILFISAAFWGHYFEADLPPVMPW
Low Complexity Region (SEG)
WRQIFSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTefvssifseeeslsNVKRSKSDHLALIHCENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIpslkclpsllctllnlqtlEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPELRQLLRAFEDMEWRKSQMVEASYIAAIWLSISTVISALIRSILFISAAFWGHYFEADLPPVMPW
Disordered region (IsUnstruct)
***IFSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEFVSSIF**************DHLALIHCENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITL**********LKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLT****************LEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPELRQLLRAFEDMEWRKSQMVEASYIAAIWLSISTVISALIRSILFISAAFWGHYFEADL******
Disordered Region (DISOPRED)
WRQIFSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEFVSSIF****************LALIHCENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPA******SPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPEL***********WRKSQMVEASYIAAIWLSISTVISALIRSILFISAAFWGHYFEADLPPVMP*
Disordered Region (DISEMBL)
WRQIFSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEFVSS****************DHLALIHCENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPELRQLLRAFEDMEWRKSQMVEASYIAAIWLSISTVISALIRSILFISAAFWGHYFEADLPPVMPW
Disordered Region (DISPRO)
WRQIFSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEFVSSIFSEEESLSNVKRSKSDHLALIHCENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPELRQLLRAFEDMEWRKSQMVEASYIAAIWLSISTVISALIRSILFISAAFWGHYFEADLPPVMPW
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
WRQIFSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEFVSSIFSEEESLSNVKRSKSDHLALIHCENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPELRQLLRAFEDMEWRKSQMVEASYIAAIWLSISTVISALIRSILFISAAFWGHYFEADLPPVMPW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	478	2.2.26 [Sep-21-2011]
Q8W474	907	Probable disease resistan	yes	no	0.815	0.429	0.286	5e-26
Q9FJB5	901	Disease resistance RPP8-l	no	no	0.859	0.456	0.251	9e-26
Q6L3Z7	1317	Putative late blight resi	N/A	no	0.845	0.306	0.290	7e-25
Q9XIF0	906	Putative disease resistan	no	no	0.822	0.433	0.294	1e-24
P59584	910	Disease resistance protei	no	no	0.861	0.452	0.238	1e-23
Q6L403	1312	Putative late blight resi	N/A	no	0.845	0.307	0.292	1e-23
P0C8S1	906	Probable disease resistan	no	no	0.809	0.427	0.261	1e-22
Q6L3X3	1202	Putative late blight resi	N/A	no	0.763	0.303	0.282	2e-22
Q8W4J9	908	Disease resistance protei	no	no	0.853	0.449	0.256	8e-22
Q9FJK8	908	Probable disease resistan	no	no	0.841	0.442	0.257	2e-21

>sp|Q8W474|DRL7_ARATH Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4

 Score =  119 bits (298), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 134/467 (28%), Positives = 203/467 (43%), Gaps = 77/467 (16%)

Query: 6   SVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFI---PYNSEET----AKHYLK 58
           S  ELP +LK C +YL  FP   +I+ E+L   W AEG      Y++ ET     + YL+
Sbjct: 412 SFEELPSYLKHCFLYLAHFPEDHKINVEKLSYCWAAEGISTAEDYHNGETIQDVGQSYLE 471

Query: 59  ELIHRGFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEF----VSSIFSEEESLSNVK 114
           EL+ R  I   +  +      C++  +        A++  F    V S+     S  N +
Sbjct: 472 ELVRRNMIIWERDATASRFGTCHLHDMMREVCLFKAKEENFLQIAVKSVGVTSSSTGNSQ 531

Query: 115 RSKSDHLALIHC---------------------------ENF------CKKFKHLRVLNL 141
                   +  C                           EN+        + K LRVL+L
Sbjct: 532 SPCRSRRLVYQCPTTLHVERDINNPKLRSLVVLWHDLWVENWKLLGTSFTRLKLLRVLDL 591

Query: 142 GSAVLD--QYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNL--QTLEMPSSYIDHSPE 197
                +  + P G+ NL +L+YL L    +  LPS L  L+ L    L++ + +I   P 
Sbjct: 592 FYVDFEGMKLPFGIGNLIHLRYLSLQDAKVSHLPSSLGNLMLLIYLNLDVDTEFI-FVP- 649

Query: 198 DIWMMQKLMHLNFGSITLPAPPKN-----NSSPLKNLIFISALHPSSCTPDILGRLPNVQ 252
           D++M  ++  L +  + L    K      N   L+ L++ S  H SS   D+ G +  + 
Sbjct: 650 DVFM--RMHELRYLKLPLHMHKKTRLSLRNLVKLETLVYFSTWHSSS--KDLCG-MTRLM 704

Query: 253 TLRISGDLSYYHSGVSKSLCQLHKLECLKLVN--EGKMRQ---------LSRMILSEY-- 299
           TL I          +S S+  L  LE L +V     KMR+         L  ++L  Y  
Sbjct: 705 TLAIRLTRVTSTETLSASISGLRNLEYLYIVGTHSKKMREEGIVLDFIHLKHLLLDLYMP 764

Query: 300 ---KFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLK 356
               FP  LT + LS   L EDPMP LE+L HL+ + L + SY  R++ C G   FPQLK
Sbjct: 765 RQQHFPSRLTFVKLSECGLEEDPMPILEKLLHLKGVILLKGSYCGRRMVCSG-GGFPQLK 823

Query: 357 ILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSL 403
            L +  +   EEW +  G+MP LE+L +  C  L+++P+    I SL
Sbjct: 824 KLEIVGLNKWEEWLVEEGSMPLLETLSILDCEELKEIPDGLRFIYSL 870

Possible disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1

 Score =  118 bits (296), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 119/473 (25%), Positives = 205/473 (43%), Gaps = 62/473 (13%)

Query: 5   FSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEG-FIPYNSEETAKHYLKELIHR 63
            S  +LP  LK C +YL  FP   +I T  LY  W AEG +      ++ + YL+EL+ R
Sbjct: 408 LSYEDLPTDLKHCFLYLAHFPEDYKIKTRTLYSYWAAEGIYDGLTILDSGEDYLEELVRR 467

Query: 64  GFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEFV---------SSIFSEEESLSNVK 114
             +   K      +K C +  +        A+   F+         S+I ++  S S  +
Sbjct: 468 NLVIAEKSNLSWRLKLCQMHDMMREVCISKAKVENFLQIIKVPTSTSTIIAQSPSRS--R 525

Query: 115 RSKSDHLALIHCENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKC--L 172
           R         H     KK + L VL L   +  Q     ++L  L+ L L+    +   L
Sbjct: 526 RLTVHSGKAFHILGHKKKVRSLLVLGLKEDLWIQSASRFQSLPLLRVLDLSSVKFEGGKL 585

Query: 173 PSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFG-SITLPAPPKNNSSPLKNLIF 231
           PS +  L++L+ L +  + + H P  I  ++ +++LN   +I +P    N    +  L +
Sbjct: 586 PSSIGGLIHLRFLSLHQAVVSHLPSTIRNLKLMLYLNLHVAIGVPVHVPNVLKEMLELRY 645

Query: 232 IS---ALHPS---------------------SCTPDILGRLPNVQTLRISGDLSYYHSGV 267
           +S    +H                       S   D+L R+  ++   +S         +
Sbjct: 646 LSLPLDMHDKTKLELGDLVNLEYLWCFSTQHSSVTDLL-RMTKLRFFGVSFSERCTFENL 704

Query: 268 SKSLCQLHKLECLKLVNEGK----------------MRQLS-----RMILSEYKFPPSLT 306
           S SL Q  KLE L  +   K                +++LS       I  +++ PP + 
Sbjct: 705 SSSLRQFRKLETLSFIYSRKTYMVDYVGEFVLDFIHLKKLSLGVHLSKIPDQHQLPPHIA 764

Query: 307 QLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWL 366
            + L    + EDPMP LE+L HL+ ++L++ +++ R++ C     FPQL+ L +     L
Sbjct: 765 HIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVC-SKGGFPQLRALQISEQSEL 823

Query: 367 EEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPELRQLL 419
           EEW +  G+MP L  LI++ C  L +LP+    + SL +L++   + E ++ L
Sbjct: 824 EEWIVEEGSMPCLRDLIIHSCEKLEELPDGLKYVTSLKELKIEGMKREWKEKL 876

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6L3Z7|R1B14_SOLDE Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1

 Score =  115 bits (288), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 139/478 (29%), Positives = 208/478 (43%), Gaps = 74/478 (15%)

Query: 10   LPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNS----EETAKHYLKELIHRGF 65
            LP HLK C +Y  AF     I   +L +LW++E FI  +     E+ A+ YL+ LI R  
Sbjct: 783  LPCHLKSCFLYFGAFLEDEVIDISRLIRLWISESFIKSSEGRRLEDIAEGYLENLIGRNL 842

Query: 66   IQVSKR-RSGGTIKACYVPSIAYTSLALMARKTEFVSSIFSEEESLSNVKRSKSD-HLAL 123
            + V++R  S G +KAC +  +        A +  F+  I  ++ S   V   K   HLA 
Sbjct: 843  VMVTQRADSDGKVKACRLHDVLLDFCKERAAEENFLLWINRDQISTKAVYSHKQHAHLAF 902

Query: 124  IHCENFCK--------------------------------KFKHLRVLNLGSAVLDQYPP 151
               +N  +                                 FK L+VL+L   V+  + P
Sbjct: 903  TEMDNLVEWSASCSLVGSVLFKNPDSYLYSPAFSTSLILLNFKFLKVLDLEHQVVIDFIP 962

Query: 152  GLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHS-----PEDIWMMQKLM 206
                LFYL+YL  +I     +PS +  L NL+TL + S+ +        P  IW M KL 
Sbjct: 963  T--ELFYLRYLSASIEQ-NSIPSSISNLWNLETLILKSTPVGRHNTLLLPSTIWDMVKLR 1019

Query: 207  HLNFGSITLPAPPKN------NSSPLKNLIFISALHPSSCTPD--ILGRLPNVQTLRISG 258
            HL+    +    P+N      NS+ L +L  IS  + SS      IL + PN++ L    
Sbjct: 1020 HLHIPKFS----PENEEALLENSARLYDLETISTPYFSSVEDAELILRKTPNLRKLICEV 1075

Query: 259  D-LSY---YHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTE 314
            + L Y   YH      L    +LE LKL      + +   I +     P+L  L LS   
Sbjct: 1076 ECLEYPPQYHV-----LNFPIRLEILKLYRSKAFKTIPFCISA-----PNLKYLKLSGFY 1125

Query: 315  LVEDPMP-TLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGA 373
            L    +  T++ L HLEVLKL    + + +   V    FPQLKIL L+  L L +W +  
Sbjct: 1126 LDSQYLSETVDHLKHLEVLKLCDLEFGDHREWKVSNGMFPQLKILKLE-YLSLMKWIVAD 1184

Query: 374  GAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPELRQLLRAFEDMEWRKSQ 431
             A P LE L+L+ C  L ++P     I SL  +E+      + +  +  E+ +   +Q
Sbjct: 1185 DAFPNLEQLVLHGCQDLMEIPSCFMDILSLKYIEVDMSNKSVVKSAKNIEETQVEDNQ 1242

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

>sp|Q9XIF0|DRL13_ARATH Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1

 Score =  114 bits (286), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 133/452 (29%), Positives = 199/452 (44%), Gaps = 59/452 (13%)

Query: 10  LPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFI-PYNSE-----ETAKHYLKELIHR 63
           LP +LK C +YL ++P   EI  E+L  +W AEG   P N E     + A  Y++EL+ R
Sbjct: 412 LPGYLKHCLLYLASYPEDHEIEIERLSYVWAAEGITYPGNYEGATIRDVADLYIEELVKR 471

Query: 64  GFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEFV----------------------- 100
             +   +       + C +  +      L A++  F+                       
Sbjct: 472 NMVISERDALTSRFEKCQLHDLMREICLLKAKEENFLQIVTDPTSSSSVHSLASSRSRRL 531

Query: 101 ----SSIFSEEESLSNVK-RS----KSDHLALIHCENFCKKFKHLRVLNLGSAVL--DQY 149
               +SIFS E  + N K RS       +       NF  +   LRVL+L  A     + 
Sbjct: 532 VVYNTSIFSGENDMKNSKLRSLLFIPVGYSRFSMGSNFI-ELPLLRVLDLDGAKFKGGKL 590

Query: 150 PPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNL--QTLEMPSSYIDHSPEDIWMMQKLMH 207
           P  +  L +LKYL L   S+  LPS L  L +L    L + S  + + P     M +L +
Sbjct: 591 PSSIGKLIHLKYLSLYQASVTYLPSSLRNLKSLLYLNLRINSGQLINVPNVFKEMLELRY 650

Query: 208 LNF--GSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLR--ISGDLSYY 263
           L+      +L      N   L+ LI  S    SS T   L R+  ++TL+  ISG+   +
Sbjct: 651 LSLPWERSSLTKLELGNLLKLETLINFST-KDSSVTD--LHRMTKLRTLQILISGE-GLH 706

Query: 264 HSGVSKSLCQLHKLECLKLVNEGKMRQLSR-------MILSEYKFPPSLTQLSLSNTELV 316
              +S +L  L  LE L +       Q          M+     FP  LT +SL    L 
Sbjct: 707 METLSSALSMLGHLEDLTVTPSENSVQFKHPKLIYRPMLPDVQHFPSHLTTISLVYCFLE 766

Query: 317 EDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAM 376
           EDPMPTLE+L  L+V+ L  N+Y+ R++ C G   FP L  L +  +  LEEW +  G+M
Sbjct: 767 EDPMPTLEKLLQLKVVSLWYNAYVGRRMVCTG-GGFPPLHRLEIWGLDALEEWIVEEGSM 825

Query: 377 PKLESLILNPCAYLRKLPEEQWCIKSLCKLEL 408
           P L +L +  C  L+++P+    I SL +L +
Sbjct: 826 PLLHTLHIVDCKKLKEIPDGLRFISSLKELAI 857

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1

 Score =  111 bits (278), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 114/477 (23%), Positives = 207/477 (43%), Gaps = 65/477 (13%)

Query: 5   FSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNS-EETAKHYLKELIHR 63
            S  +LP HLK C ++L  +P   +I T+ L+  W AEG    ++ +++ ++YL+EL+ R
Sbjct: 414 LSYEDLPTHLKHCFLHLAHYPEDSKIYTQDLFNYWAAEGIYDGSTIQDSGEYYLEELVRR 473

Query: 64  GFIQVSKRR--SGGTIKACYVPSIAYTSLALMARKTEFVSSIFSEEESLSNVKR---SKS 118
             +    R   S   IK C +  +        A++  F+  I  +    S +     S+S
Sbjct: 474 NLVIADNRYLISEFKIKNCQMHDMMREVCLSKAKEENFL-QIIKDPTCTSTINAQSPSRS 532

Query: 119 DHLALIHCENFCKKFKHLRVLNLGSAVLDQYPPG--------LENLFYLKYLKLNIPSLK 170
             L+ IH         H R   + S ++ ++             NL  L+ L L+    +
Sbjct: 533 RRLS-IHSGKAFHILGHKRNAKVRSLIVSRFEEDFWIRSASVFHNLTLLRVLDLSWVKFE 591

Query: 171 C--LPSLLCTLLNLQTLEMPSSYIDHSP------------------EDIW----MMQKLM 206
              LP  +  L++L+ L +  + + H P                  ED+     ++++++
Sbjct: 592 GGKLPCSIGGLIHLRYLRLYGAVVSHLPSTMRNLKLLLYLNLSVHNEDLIHVPNVLKEMI 651

Query: 207 HLNFGSITLPAPPKNN--SSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYH 264
            L + SI +    K       L NL ++        +   L R+  ++ L +S    Y  
Sbjct: 652 ELRYLSIPVKMDDKTKLELGDLVNLEYLYGFSTQHTSVTDLLRMTKLRNLTVSLSERYNF 711

Query: 265 SGVSKSLCQLHKLECLKLVNEGKMRQLSRM----------------------ILSEYKFP 302
             +S SL +L  LE L ++   K   +  M                      I  +++FP
Sbjct: 712 KTLSSSLRELRNLETLYVLFSRKTYMVDHMGEFVLDHFIHLKELGLVVRMSKIPDQHQFP 771

Query: 303 PSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKS 362
           P L  + L    + EDPMP LE+L HL+ ++L+  +++ R++ C     F QL  L +  
Sbjct: 772 PHLVHIFLFYCGMEEDPMPILEKLHHLKSVQLRYKAFVGRRMVC-SKDGFTQLCALDISK 830

Query: 363 MLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPELRQLL 419
              LE+W +  G+MP L +L ++ C  L++LP+    I SL +L++   + E ++ L
Sbjct: 831 QSELEDWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKIEGMKREWKEKL 887

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6L403|R1B17_SOLDE Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 139/475 (29%), Positives = 206/475 (43%), Gaps = 71/475 (14%)

Query: 10   LPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNS----EETAKHYLKELIHRGF 65
            LP HLK C +Y  AF     I   +L +LW++E FI  +     E+ A+ YL+ LI R  
Sbjct: 783  LPCHLKSCFLYFGAFLEDEVIDISRLIRLWISESFIKSSEGRRLEDIAEGYLENLIGRNL 842

Query: 66   IQVSKR-RSGGTIKACYVPSIAYTSLALMARKTEFVSSIFSEEESLSNVKRSKSD-HLAL 123
            + V++R  S G +KAC +  +        A +  F+  I  ++ S   V   K   HLA 
Sbjct: 843  VMVTQRADSDGKVKACRLHDVLLDFCKERAAEENFLLWINRDQISTKAVYSHKQHAHLAF 902

Query: 124  IHCENFCK--------------------------------KFKHLRVLNLGSAVLDQYPP 151
               +N  +                                 FK L+VL+L   V+  + P
Sbjct: 903  TEMDNLVEWSASCSLVGSVLFKNPDSYLYSPAFSISLILLNFKFLKVLDLERQVVIDFIP 962

Query: 152  GLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMP--SSYIDHSPEDIWMMQKLMHLN 209
                LFYL+YL  +I     +PS +  L NL+TL +   S+     P  IW M KL HL+
Sbjct: 963  T--ELFYLRYLSASIEQ-NSIPSSISNLWNLETLILKGISAKTLLLPSTIWDMVKLRHLH 1019

Query: 210  FGSITLPAPPKN------NSSPLKNLIFISALHPSSCTPD--ILGRLPNVQTLRISGD-L 260
                +    P+N      NS+ L +L  IS  + SS      IL + PN++ L    + L
Sbjct: 1020 IPKFS----PENDEALLENSARLYDLETISTPYFSSVEHAELILRKTPNLRELICEVECL 1075

Query: 261  SY---YHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVE 317
             Y   YH      L    +LE LKL      + +   I +     P+L  L LS   L  
Sbjct: 1076 EYPPQYH-----VLNFPIRLEILKLYRSKAFKTIPFCISA-----PNLKYLKLSGFYLDS 1125

Query: 318  DPMP-TLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAM 376
              +  T + L HLEVLKL    + + +   V    FPQLKIL L+  L L +W +   A 
Sbjct: 1126 QYLSETADHLKHLEVLKLCDLEFGDHREWKVSNGMFPQLKILKLE-YLSLMKWIVADDAF 1184

Query: 377  PKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPELRQLLRAFEDMEWRKSQ 431
            P LE L+L+ C  L ++P     I SL  +E+      + +  +  E+ +   +Q
Sbjct: 1185 PNLEQLVLHGCQDLMEIPSCFMDILSLKYIEVDMSNKSVVKSAKNIEETQVEDNQ 1239

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

>sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1

 Score =  108 bits (269), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 192/455 (42%), Gaps = 68/455 (14%)

Query: 5   FSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFI-PYNS----EETAKHYLKE 59
            S  +LP  LK C  YL  FP   +I  + L+  WVAEG I P++     ++T + YL+E
Sbjct: 409 LSYEDLPMQLKHCFFYLAHFPEDYKIDVKILFNYWVAEGIITPFHDGSTIQDTGESYLEE 468

Query: 60  LIHRGFIQV-----------------------SKRRSGGTIKACYVPSIAYTSLALMA-- 94
           L+ R  + V                       SK +    I+   VP+   T++   +  
Sbjct: 469 LVRRNMVVVEESYLTSRIEYCQMHDMMREVCLSKAKEENFIRVVKVPTTTSTTINAQSPC 528

Query: 95  RKTEFVSSIFSEEESLSNVKRSKSDHLALIHCENFCKKFKH------LRVLNLGSAVLD- 147
           R    V    +    L +    K+  + +   E    K +       LRVL+L     + 
Sbjct: 529 RSRRLVLHSGNALHMLGHKDNKKARSVLIFGVEEKFWKPRGFQCLPLLRVLDLSYVQFEG 588

Query: 148 -QYPPGLENLFYLKYLKLNIPSLKCLPS--LLCTLLNLQTLEMPSSYIDHSPEDIWMMQK 204
            + P  + +L +L++L L    +  LPS      LL    L +    + H P  +  MQ+
Sbjct: 589 GKLPSSIGDLIHLRFLSLYEAGVSHLPSSLGNLKLLLCLNLGVADRLLVHVPNVLKEMQE 648

Query: 205 LMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRI--SGDLSY 262
           L +L     ++PA  K     L NL  ++       +   L R+  +  L +  SG+ ++
Sbjct: 649 LRYLRLPR-SMPAKTKLELGDLVNLESLTNFSTKHGSVTDLLRMTKLSVLNVIFSGECTF 707

Query: 263 YHSGVSKSLCQLHKLECLK--------LVNEG------KMRQLSRMILS--------EYK 300
               +  SL +L  LE L         + N G          L  + LS        +Y+
Sbjct: 708 --ETLLLSLRELRNLETLSFHDFQKVSVANHGGELLVLDFIHLKDLTLSMHLPRFPDQYR 765

Query: 301 FPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHL 360
           FPP L  + L    + EDPMP LE+L HL+ + L   ++L R++ C     FPQL  L +
Sbjct: 766 FPPHLAHIWLIGCRMEEDPMPILEKLLHLKSVYLSSGAFLGRRMVC-SKGGFPQLLALKM 824

Query: 361 KSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPE 395
                L EW +  G+MP L +L ++ C  L++LP+
Sbjct: 825 SYKKELVEWRVEEGSMPCLRTLTIDNCKKLKQLPD 859

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6L3X3|R1B8_SOLDE Putative late blight resistance protein homolog R1B-8 OS=Solanum demissum GN=R1B-8 PE=5 SV=1

 Score =  107 bits (268), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 126/446 (28%), Positives = 187/446 (41%), Gaps = 81/446 (18%)

Query: 10   LPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIP----YNSEETAKHYLKELIHRGF 65
            LP HLK C +Y  AF     I   +L  LW++E FI        E  A+ YL+ LI R  
Sbjct: 702  LPCHLKSCFLYFGAFLEDRVIDISRLIGLWISESFIKSCEGRRLEYIAEGYLENLIGRNL 761

Query: 66   IQVSKRR-SGGTIKACYVPSIAYTSLALMARKTEFVSSIFSEEESLSNVKRSKSDHLALI 124
            + V++R  S G +KAC +  +        A +  F+  I  ++ + +     +  HLA  
Sbjct: 762  VMVTQRAISDGKVKACRLHDVLLDFCKKRAAEENFLLWINRDQSTKAVYSHKQHAHLAFT 821

Query: 125  HCENFCK-----------------------------------KFKHLRVLNLGSAVLDQY 149
              +N  +                                    FK L+VL+L   V+  +
Sbjct: 822  EMDNLVEWSASCSLVGSVLFKSYDPYFRPLSSHAFAISHILLNFKFLKVLDLEHQVIIDF 881

Query: 150  PPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPS-SYIDHS----PEDIWMMQK 204
             P    LFYL+YL  +I     +PS +  L NL+TL + S S   H+    P  +W M K
Sbjct: 882  IPT--ELFYLRYLSAHIDQ-NSIPSSISNLWNLETLILKSRSASKHNRVLLPSTVWDMVK 938

Query: 205  LMHLN--FGSITLPAPPKNNSSPLKNLIFISALHPSSCTPD--ILGRLPNVQTLRISGDL 260
            L HL+  + S         NS+ L +L  +S+ + S       +L R PN++ L      
Sbjct: 939  LRHLHIPYFSTEDEEALLENSAKLYDLETLSSPYFSRVEDAELMLRRTPNLRKL------ 992

Query: 261  SYYHSGVSKSLC-----QLH------KLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLS 309
                  + +  C     Q H      +LE LKL N  K  +     +S     P+L  L 
Sbjct: 993  ------ICEVQCLESPHQYHVLNFPIRLEILKLYNRSKAFKTIPFCIS----APNLKYLK 1042

Query: 310  LSNTELVEDPMP-TLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEE 368
            LS   L    +  T + L HLEVLKL    + +     V    FPQLKIL L+  + L +
Sbjct: 1043 LSRFYLDSQYLSETADHLKHLEVLKLSCVEFGDHGEWEVSNGMFPQLKILKLE-YVSLMK 1101

Query: 369  WTMGAGAMPKLESLILNPCAYLRKLP 394
            W +     P LE L+L  C +L ++P
Sbjct: 1102 WIVADDVFPNLEQLVLRGCRHLMEIP 1127

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

>sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2

 Score =  105 bits (262), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 123/479 (25%), Positives = 210/479 (43%), Gaps = 71/479 (14%)

Query: 5   FSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNS-EETAKHYLKELIHR 63
            S  +LP HLK C + L  FP   EIST  L+  W AEG    ++ E++ ++YL+EL+ R
Sbjct: 414 LSYEDLPTHLKHCFLNLAHFPEDSEISTYSLFYYWAAEGIYDGSTIEDSGEYYLEELVRR 473

Query: 64  GFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEFV---------SSIFSEEESLS--- 111
             +           K C +  +        A++  F+         S+I ++  S S   
Sbjct: 474 NLVIADDNYLSWQSKYCQMHDMMREVCLSKAKEENFLQIIIDPTCTSTINAQSPSRSRRL 533

Query: 112 NVKRSKSDHL--------------------ALIHCENFCKKFKHLRVLNLGSAVLD--QY 149
           ++   K+ H+                      I   +       LRVL+L     +  + 
Sbjct: 534 SIHSGKAFHILGHKNKTKVRSLIVPRFEEDYWIRSASVFHNLTLLRVLDLSWVKFEGGKL 593

Query: 150 PPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYID-----HSPEDIWMMQK 204
           P  +  L +L+YL L    +  LPS   T+ NL+ L   +  +D     H P    ++++
Sbjct: 594 PCSIGGLIHLRYLSLYEAKVSHLPS---TMRNLKLLLYLNLRVDTEEPIHVPN---VLKE 647

Query: 205 LMHLNFGSITLPAPPKNNS--SPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSY 262
           ++ L + S+ L    K       L NL ++        +   L R+  ++ L +S     
Sbjct: 648 MIQLRYLSLPLKMDDKTKLELGDLVNLEYLYGFSTQHSSVTDLLRMTKLRYLAVSLSERC 707

Query: 263 YHSGVSKSLCQLHKLECLKLVNE---------GK--------MRQLS---RM--ILSEYK 300
               +S SL +L  LE L  +           G+        ++QL    RM  I  +++
Sbjct: 708 NFETLSSSLRELRNLETLNFLFSLETYMVDYMGEFVLDHFIHLKQLGLAVRMSKIPDQHQ 767

Query: 301 FPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHL 360
           FPP L  L L    + EDPMP LE+L HL+ ++L + ++L  ++ C     FPQL ++ +
Sbjct: 768 FPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVC-SKGGFPQLCVIEI 826

Query: 361 KSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPELRQLL 419
                LEEW +  G+MP L +L ++ C  L++LP+    I SL +L++   + E ++ L
Sbjct: 827 SKESELEEWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYITSLKELKIEGMKREWKEKL 885

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 125/485 (25%), Positives = 220/485 (45%), Gaps = 83/485 (17%)

Query: 5   FSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNS-EETAKHYLKELIHR 63
            S  +LP HLK   +YL  FP   +I T+ L+  W AEG    ++ +++ ++YL+EL+ R
Sbjct: 414 LSYEDLPTHLKHRFLYLAHFPEDSKIYTQDLFNYWAAEGIYDGSTIQDSGEYYLEELVRR 473

Query: 64  GFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEFV---------SSIFSEEESLS--- 111
             +    R        C +  +        A++  F+         S+I ++  S S   
Sbjct: 474 NLVIADNRYLSLEFNFCQMHDMMREVCLSKAKEENFLQIIKDPTSTSTINAQSPSRSRRF 533

Query: 112 NVKRSKSDHLALIHCEN------FCKKFKH---------------LRVLNLGSAVLD--Q 148
           ++   K+ H+ L H  N         +F+                LRVL+L     +  +
Sbjct: 534 SIHSGKAFHI-LGHRNNPKVRSLIVSRFEEDFWIRSASVFHNLTLLRVLDLSRVKFEGGK 592

Query: 149 YPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYID-----HSPEDIWMMQ 203
            P  +  L +L+YL L    +  LPS   T+ NL+ L   +  +D     H P    +++
Sbjct: 593 LPSSIGGLIHLRYLSLYGAVVSHLPS---TMRNLKLLLFLNLRVDNKEPIHVPN---VLK 646

Query: 204 KLMHLNFGSITLPAPPKNNSS-------PLKNLIFISALHPSSCTPDILGRLPNVQTLRI 256
           +++ L +  ++LP    + +         L+ L + S  H  S   D+L R+  ++ L +
Sbjct: 647 EMLELRY--LSLPQEMDDKTKLELGDLVNLEYLWYFSTQH--SSVTDLL-RMTKLRNLGV 701

Query: 257 SGDLSYYHSGVSKSLCQLHKLECLKLV---------NEGK--------MRQLS---RM-- 294
           S         +S SL +L  LE L ++         + G+        ++QL    RM  
Sbjct: 702 SLSERCNFETLSSSLRELRNLEMLNVLFSPEIVMVDHMGEFVLDHFIHLKQLGLAVRMSK 761

Query: 295 ILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQ 354
           I  +++FPP L  + L +  + EDPMP LE+L HL+ + L   +++ R++ C     FPQ
Sbjct: 762 IPDQHQFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVC-SKGGFPQ 820

Query: 355 LKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPE 414
           L  L +     LEEW +  G+MP L +L ++ C  L++LP+    I SL +L++   + E
Sbjct: 821 LCALGISGESELEEWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKIREMKRE 880

Query: 415 LRQLL 419
            ++ L
Sbjct: 881 WKEKL 885

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	478
359491404	922	PREDICTED: probable disease resistance R	0.899	0.466	0.312	2e-47
359496848	856	PREDICTED: disease resistance RPP8-like	0.815	0.455	0.296	1e-42
147766035	902	hypothetical protein VITISV_038742 [Viti	0.815	0.432	0.285	5e-41
359489148	897	PREDICTED: probable disease resistance R	0.880	0.469	0.291	2e-36
224075299	896	nbs-lrr resistance protein [Populus tric	0.820	0.437	0.288	3e-36
224143391	542	predicted protein [Populus trichocarpa]	0.880	0.776	0.282	1e-35
359489156	899	PREDICTED: probable disease resistance p	0.884	0.470	0.292	1e-35
224096480	910	nbs-lrr resistance protein [Populus tric	0.882	0.463	0.281	2e-35
444301787	878	NBS type disease resistance protein [Mal	0.830	0.452	0.305	4e-35
356567194	750	PREDICTED: disease resistance protein RP	0.843	0.537	0.294	5e-35

>gi|359491404|ref|XP_002274414.2| PREDICTED: probable disease resistance RPP8-like protein 2-like [Vitis vinifera]

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 152/486 (31%), Positives = 237/486 (48%), Gaps = 56/486 (11%)

Query: 5   FSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNS----EETAKHYLKEL 60
            S  +LP++LK C +Y   FP   EIS  +L  LWVAEGF+        E+ A+ YL+EL
Sbjct: 426 LSYSDLPYYLKSCFLYFGLFPEDYEISARRLILLWVAEGFVQPRGQEPLEDVAEDYLEEL 485

Query: 61  IHRGFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEFVSSIFSE--EESLSNVKR--- 115
           + R  IQV+ R+S G IK C V  + +       ++ +F+  I  E    SL+ V+R   
Sbjct: 486 VGRSMIQVATRKSNGRIKTCCVHDLLHELSVSKGKEDQFLDIIHGEFTVSSLTRVRRLAI 545

Query: 116 --------SKSDHLALIHCENFC-------KKFKHLRVLNLGSAVLDQYPPGLENLFYLK 160
                     +  +  + C + C       +KFK LR+L+L    + +    + NL +L+
Sbjct: 546 HLGVPPTTKNTSKVRSLLCFDICEPSFQELRKFKLLRILDLEGVYISRLHSSIGNLIHLR 605

Query: 161 YLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPK 220
           YL L    LK LP  +  LLNLQTL++ S+ ++  P  IW MQKL HL F  +   A   
Sbjct: 606 YLGLRGTWLKKLPPSIQFLLNLQTLDLRSTLLNPIPIVIWKMQKLRHLYFNELEEMAVNP 665

Query: 221 NNSSPLKNLIFISA--LHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLE 278
              + L NL  +    ++ +S   + L +L N++ L + GDL  +   + K +    +LE
Sbjct: 666 PTDASLANLQTLHGICINQTSYVENGLSKLTNLRELGLHGDLLLHEEAIGKWIFSSERLE 725

Query: 279 CLKLVNEGKMRQ-------------------------LSRMILSEYKFPPSLTQLSLSNT 313
           CLKL     M                           ++++  +EY FP +LT+LSL  +
Sbjct: 726 CLKLHTRDVMGDFAKNAIPKLNFSSHPHLIKLHLKGFMAKLFDAEY-FPQNLTELSLKGS 784

Query: 314 ELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGA 373
            L+EDPM  LE L  L VLKLK ++YL +++ C  C  FPQL  L L  +  +E W +  
Sbjct: 785 FLMEDPMVKLEMLQSLRVLKLKHSAYLGKEMIC-SCGGFPQLHFLKLSFLNTVERWRIED 843

Query: 374 GAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPELRQLLRAFEDMEWRKSQMV 433
           GAM +L  L +  C  L+ +P     + ++ KL+L +   E    ++  +   W K   +
Sbjct: 844 GAMGRLRQLEIIECKRLKIVPRGLQPVTTIHKLKLGYMPREFEMKVQERQGENWYK---I 900

Query: 434 EASYIA 439
           E + +A
Sbjct: 901 EHAVVA 906

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496848|ref|XP_002269653.2| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera]

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 132/445 (29%), Positives = 219/445 (49%), Gaps = 55/445 (12%)

Query: 5   FSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEET----AKHYLKEL 60
            S  +LP++LK C +Y   FP  +EI   +L  LW+AEGF+    EE+    A+ +L+EL
Sbjct: 372 LSYNDLPYYLKPCFLYFGLFPEDLEIPVGKLVLLWIAEGFVQQRGEESMEDVAEDFLEEL 431

Query: 61  IHRGFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEFVSSIFSEEESLSNVKRSK--- 117
           + R  IQV+++R  G IKAC +  +        A++ +F+  + S     S   R++   
Sbjct: 432 VDRSMIQVAEKRYNGKIKACRIHDLLRDLAMSEAKECKFLEILDSTNIDTSVTTRARRIS 491

Query: 118 -----SDHLALIH-------------CENFCKK---------FKHLRVLNLGSAVLDQYP 150
                 +++ L H             CE   ++          K LRVL+L        P
Sbjct: 492 VHSSLEEYMKLRHPNPHFRSMLHFSRCEESLRRDQWKSLFESLKLLRVLDLERVQTHALP 551

Query: 151 PGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNF 210
             +  L +L+YL L    L+ LPS +    NLQTL++ ++ +   P  +W M  L HL  
Sbjct: 552 KEIRELVHLRYLGLRRTGLQRLPSSIQNFCNLQTLDIRATKVSRLPIQLWNMPGLRHLYL 611

Query: 211 GSITLPA-PPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSK 269
              ++   PP + S      +   +++ +   PD+LG+L N++ L I G  +     +S+
Sbjct: 612 EKTSIAGHPPVHVSVMHLQTLSTVSIYGNQWIPDLLGKLTNLRKLGIHGYFASQTEALSR 671

Query: 270 SLCQLHKLECLKLVN-EGKMRQLSRMILSE------------YKFP------PSLTQLSL 310
            L +L  L+ L+L   E  +    +++L++             K P      P+LT++ L
Sbjct: 672 CLVKLSNLQNLQLRGTELILEPTIKLLLNQPNIHKLHLSGPIEKLPDPQEIQPNLTKIIL 731

Query: 311 SNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWT 370
            N+ LV+D    L +LP+L++LKL  NS+  +++ C   S FP+L  L L  ++ LEEW 
Sbjct: 732 ENSLLVQDIFVILGKLPNLQMLKLLINSFFGKEITC-SASGFPKLHGLELSELVNLEEWR 790

Query: 371 MGAGAMPKLESLILNPCAYLRKLPE 395
           +  GAMP L  LI++ C  L+K+PE
Sbjct: 791 VDDGAMPSLRHLIIDHCDQLKKIPE 815

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766035|emb|CAN70214.1| hypothetical protein VITISV_038742 [Vitis vinifera]

 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 127/445 (28%), Positives = 215/445 (48%), Gaps = 55/445 (12%)

Query: 5   FSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEET----AKHYLKEL 60
            S  +LP++LK C +Y   FP  +EI   +L  LW+AEGF+    EE+    A+ +L+EL
Sbjct: 418 LSYNDLPYYLKPCFLYFGLFPEDLEIPVGKLVLLWIAEGFVQQRGEESMEDVAEDFLEEL 477

Query: 61  IHRGFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEFVSSIFSEEESLSNVKRSK--- 117
           + R  IQV+++R  G IK C +  +        A++ +F+  + S     S   R++   
Sbjct: 478 VDRSMIQVAEKRYNGKIKMCRIHDLLRDLAMSEAKECKFLEILDSTNIDTSVTTRARRIS 537

Query: 118 -----SDHLALIH-------------CENFCKK---------FKHLRVLNLGSAVLDQYP 150
                 +++ L H             CE   ++          K LRVL+L        P
Sbjct: 538 VHSSLEEYMKLRHPNPHFRSMLHFSRCEESLRREQWKSLFESLKLLRVLDLERVQTHALP 597

Query: 151 PGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNF 210
             +  L +L+YL L    L+ LPS +    NLQTL++ ++ +   P  +W M  L HL  
Sbjct: 598 KEIRELVHLRYLGLRRTGLQRLPSSVQNFCNLQTLDIRATKVSRLPIQLWNMPGLRHLYL 657

Query: 211 GSITLPA-PPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSK 269
              ++   PP + S      +   +++ +   PD+LG+L N++ L I G  +     +S+
Sbjct: 658 EKTSIAGHPPVHVSVMHLQTLSTVSIYGNQWIPDLLGKLTNLRKLGIHGYFASQTEALSR 717

Query: 270 SLCQLHKLECLK--------------LVNEGKMRQLS-----RMILSEYKFPPSLTQLSL 310
            L +L  L+ L+              L+N+  + +L        +    +  P+LT++ L
Sbjct: 718 CLVKLSNLQNLQLRGTELILEPTIKLLLNQPNIHKLHLSGPIEKLPDPQEIQPNLTKIIL 777

Query: 311 SNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWT 370
             + LV+D    L +LP+L++LKL  NS+  +++ C   S FP+L  L L  ++ LEEW 
Sbjct: 778 EKSLLVQDIFVILGKLPNLQMLKLLINSFFGKEITC-SASGFPKLHGLELSELVNLEEWR 836

Query: 371 MGAGAMPKLESLILNPCAYLRKLPE 395
           +  GAMP L  L+++ C  L+K+PE
Sbjct: 837 VDDGAMPSLRHLVIDHCDQLKKIPE 861

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489148|ref|XP_003633887.1| PREDICTED: probable disease resistance RPP8-like protein 4-like [Vitis vinifera]

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 141/483 (29%), Positives = 221/483 (45%), Gaps = 62/483 (12%)

Query: 5   FSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYN----SEETAKHYLKEL 60
            S  ++P++LK C +Y   FP   EI T++L +LWVAEGFI       +E+ A+ +L+EL
Sbjct: 400 LSYNDMPYYLKSCFLYCGLFPEDSEIWTDKLIRLWVAEGFIQRRGVEIAEDVAEDHLQEL 459

Query: 61  IHRGFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEF---------VSSIFSEEESLS 111
           +HR  IQV+ R   G + +C +  +        A+ T+F          S +     ++ 
Sbjct: 460 VHRSMIQVAARSFDGRVMSCRMHDLLRDLAISEAKDTKFFEGYESIDSTSPVSVRRLTIH 519

Query: 112 NVKRSKSDHLALIH------CENFC----------KKFKHLRVLNLGSAVLDQYPPGLEN 155
             K++ S HL          C + C          ++ K L VL+L    ++  P G+  
Sbjct: 520 QGKKTNSKHLHTSRSLRSFICFSVCFQKNSLRSLHRRVKLLTVLDLEGMTINTIPEGIGE 579

Query: 156 LFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSI-- 213
           L +LKYL L    +K LPS +  L NLQTL+  S+ I+  P  IW +  L HL    +  
Sbjct: 580 LIHLKYLCLRRTRIKRLPSSIGRLTNLQTLDFRSTLIEIIPSTIWKLHHLRHLYCRGVVS 639

Query: 214 TLPAPPKNNSSPLK-----NLIFISALHPSSCTPDILGRLPNVQTLRI--SGDLSYYHSG 266
           +     K  + PL      NL  +     S C  + LG+L  ++ L I  +      + G
Sbjct: 640 SQSVIDKFRNGPLSVGHLTNLQSLCLRAGSWCCGEGLGKLIELRELTIVWTEIAQTKNQG 699

Query: 267 VSKSLCQLHKLECLKLVNEGK----------------------MRQLSRMILSEYKFPPS 304
            S+S+ +L  L+ L+L   G+                        +L R       +PP+
Sbjct: 700 FSESVKKLTALQSLRLYTLGEEMLTMPHLMPFSDHTYLYHLSLNGRLERFPDEIEFYPPN 759

Query: 305 LTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSML 364
           L  L L      ++PM TLE+LP+L  L+L   S + +K+ C     F QL+ L L  + 
Sbjct: 760 LISLELRYRNAEQNPMVTLEKLPNLRFLRLSLCSSMLKKMVCTS-GGFQQLETLRLWGLK 818

Query: 365 WLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPELRQLLRAFE- 423
            LEE     GAMP L+ L+++ C  +++L       K+L  L+L+   PEL   L   E 
Sbjct: 819 ELEELIAEEGAMPDLKDLVIDACPKMKRLSHGLLQRKNLQHLKLYDLSPELMDELSRIEG 878

Query: 424 DME 426
           D+E
Sbjct: 879 DLE 881

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075299|ref|XP_002304589.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222842021|gb|EEE79568.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 136/472 (28%), Positives = 215/472 (45%), Gaps = 80/472 (16%)

Query: 5   FSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYN---SEETAKHYLKELI 61
            S  +LP++LK C +YL  FP    I   +L++LWVAEG IP+     E+ A+ YL ELI
Sbjct: 405 LSYNDLPYYLKSCFLYLGLFPEDCTIQAHKLFRLWVAEGLIPHQELRGEDVAEDYLNELI 464

Query: 62  HRGFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEFVSSIFSEEE--SLSNVKRS--- 116
            R  +Q+      G +K C +  +    L++   KTE    I   E   SL+  +R    
Sbjct: 465 ERNMVQMEGMSVNGRVKQCRLHDL-LRDLSISKAKTENFLQIPGNENIPSLTRCRRHPIY 523

Query: 117 KSDHLALI---------------------------HCENFC-----------KKFKHLRV 138
              HL+ +                           +   FC           + F  LR+
Sbjct: 524 SDSHLSCVERLSPHLRSLLFFRVVSRVRYRYFIGRNVYGFCELSGAKFDYITRNFNLLRI 583

Query: 139 LNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSS-YIDHSPE 197
           L L        P  +  L +L YL L   +++ LPS L +L NLQTL++  + ++   P+
Sbjct: 584 LELEGISCSSIPSTIGELIHLSYLGLKETNIRVLPSTLGSLCNLQTLDIAGNLHLRIIPD 643

Query: 198 DIWMMQKLMHL-----NFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQ 252
            I  M+ L HL     + G + +          LK+L  ++ +  S    +    L +++
Sbjct: 644 VICNMKNLRHLYMCGHSGGHLRIDT--------LKHLQTLTEIDVSRWKQNNTADLVSLR 695

Query: 253 TLRISGDLSYYHSGVSKSLCQLHKLECL----------KLVNEGKMRQLSRMIL------ 296
            L I G+L      +  S+  L +L  L           LV  G +R L ++ L      
Sbjct: 696 KLGIRGNLCSDTIKIFDSISALLQLRSLYLRAEGAEFPSLVQLGSLRSLIKLHLRGGISQ 755

Query: 297 --SEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQ 354
             S+  FPP+L+QL+L +T+L ++ +  LE+LP L +L+ K  SY + KL  +    FPQ
Sbjct: 756 LPSQQDFPPNLSQLTLEHTQLEQESIEILEKLPKLSILRFKAESYSKEKLT-ISADGFPQ 814

Query: 355 LKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKL 406
           L+ L   S+  L E+ +   A+P+LES ++  C  LR LPEE   + +L KL
Sbjct: 815 LEFLEFNSLESLHEFNIEENAVPRLESFLIVNCKGLRMLPEEMRFVATLHKL 866

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143391|ref|XP_002336034.1| predicted protein [Populus trichocarpa] gi|222839536|gb|EEE77873.1| predicted protein [Populus trichocarpa]

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 139/492 (28%), Positives = 220/492 (44%), Gaps = 71/492 (14%)

Query: 6   SVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNS---EETAKHYLKELIH 62
           S  +LPF+LK C  YL  FP    I   +L++LW+AEG IP+     E+ A+ YL ELI 
Sbjct: 52  SYNDLPFYLKSCFFYLGHFPEDYSIHAHKLFRLWIAEGLIPHQGERMEDVAEDYLNELIQ 111

Query: 63  RGFIQVSKRRSGGTIKACYVPSI---------------------AYTSLALMARKTEFVS 101
           R  +Q  +    G +K C +  +                      +TSLA   R   +  
Sbjct: 112 RNMVQAERMSVNGRVKQCRLHDLLRDLSTSKAKAQNFLQIPGDENFTSLARCRRHPIYSD 171

Query: 102 SIFSEEESLS----------NVKRSKSDHLALIHCENF-----------CKKFKHLRVLN 140
           S  S     S           V R +  +    H   F            + F+ LR+L 
Sbjct: 172 SHLSSLGFFSPHLRSLLFFRVVTRVRYRYFIGRHVYGFYELSNANFDYISRNFRLLRILE 231

Query: 141 LGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSS-YIDHSPEDI 199
           L      + P  + +L +L YL L   +++ LPS L +L NLQTL++  + ++   P  I
Sbjct: 232 LEGISCGRIPSTIGDLIHLSYLGLKETNIQVLPSTLGSLCNLQTLDIARNLHLRIVPNVI 291

Query: 200 WMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGD 259
           W M+ L HL     +      +N   LK+L  +S +  S    +    L +++ L++ G+
Sbjct: 292 WNMRNLRHLYMCGQSGGFLRIDN---LKHLQTLSGIDVSRWKQNNSAHLTSLRKLKMRGN 348

Query: 260 LSYYHSGVSKSLCQLHKLECLKLVNEG----KMRQLSRM--------------ILSEYKF 301
           LS     +  S+  L +L  L L  EG     + QL  +              + S  +F
Sbjct: 349 LSLDTIAIFDSISALLQLRSLYLRAEGAEFPTLSQLGSLHSLVKLHLKGGITRLPSLQEF 408

Query: 302 PPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLK 361
           PP+L+QL+L  T L +  +  LE+LP L + +LK  SY + +L  +  + FPQL+ L   
Sbjct: 409 PPNLSQLTLEYTHLEQVSIEVLEKLPKLSIFRLKAKSYSKEELG-ISANGFPQLEFLEFN 467

Query: 362 SMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPELRQLLRA 421
           S+  L E  + A A+P+LE   +  C  LR LP E   + SL +L +   Q   R  +R 
Sbjct: 468 SLESLTELKIEASALPRLEIFQIVNCKELRMLPAEMKLMTSLHELVV---QDMPRFFVRR 524

Query: 422 FEDMEWRKSQMV 433
            + ++ +K Q +
Sbjct: 525 LQGVDLQKVQHI 536

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489156|ref|XP_003633889.1| PREDICTED: probable disease resistance protein RDL6/RF9-like [Vitis vinifera]

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 142/486 (29%), Positives = 220/486 (45%), Gaps = 63/486 (12%)

Query: 5   FSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEE----TAKHYLKEL 60
            S  ++P++LK C +Y   FP   EI T++L +LWVAEGFI    EE     A+ +L+EL
Sbjct: 401 LSYNDMPYYLKSCFLYCGLFPEDSEIRTDKLIRLWVAEGFIQRRGEEIAEDVAEDHLQEL 460

Query: 61  IHRGFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEF---------VSSIFSEEESLS 111
           +HR  IQV+ R   G + +C +  +        A+ T+F          S +     ++ 
Sbjct: 461 VHRSMIQVAARSFDGRVMSCRMHDLLRDLAISEAKDTKFFEGYESIDSTSPVSVRRLTIH 520

Query: 112 NVKRSKSDHLALIH------CENFC----------KKFKHLRVLNLGSAVLDQYPPGLEN 155
             K++ S HL          C + C          ++ K L VL+L    ++  P G+  
Sbjct: 521 QGKKTNSKHLHTSRSLRSFICFSVCFQENILRSLHRRVKLLTVLDLERMPINTIPEGIGE 580

Query: 156 LFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITL 215
           L +LKYL L    +K LPS +  L NLQTL+  S++I+  P  IW +  L HL +G   +
Sbjct: 581 LIHLKYLCLRRTRIKRLPSSIGRLTNLQTLDFQSTFIEIIPSTIWKLHHLRHL-YGRGVV 639

Query: 216 PAP---PKNNSSPLK-----NLIFISALHPSSCTPDILGRLPNVQTLRI--SGDLSYYHS 265
            +     K  + PL      NL  +     S C  + LG+L  ++ L I  +      + 
Sbjct: 640 SSQSVIDKCRNGPLSVDHLTNLQSLGLRAGSWCCGEGLGKLTELRELIIEWTKMAQTKNH 699

Query: 266 GVSKSLCQLHKLECLKLVNEG---------------------KMRQLSRMILSEYKF-PP 303
           G S+S+ +L  L+ L+L   G                      +R        E +F PP
Sbjct: 700 GFSESVKKLTALQSLRLYTLGAEMFTLPHLMPFSDHTYLYHLSLRGRLERFPDEIEFYPP 759

Query: 304 SLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSM 363
           +L  L L    + +DPM TLE+LP+L  L L     + +K+ C     F QL+ L L  +
Sbjct: 760 NLISLELECWNIEQDPMVTLEKLPNLRFLILSLCYSMVKKMVCTS-GGFQQLETLTLWGL 818

Query: 364 LWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPELRQLLRAFE 423
             LEE  +  GAMP  + L++  C  +++L       K+L  L+L+   PEL   L   E
Sbjct: 819 KELEELIVEEGAMPDPKDLVIETCPKMKRLSHGLLQRKNLQHLKLYDLSPELMDELSLIE 878

Query: 424 DMEWRK 429
             +  K
Sbjct: 879 GEDREK 884

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096480|ref|XP_002334697.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222874531|gb|EEF11662.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 139/493 (28%), Positives = 220/493 (44%), Gaps = 71/493 (14%)

Query: 5   FSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNS---EETAKHYLKELI 61
            S  +LPF+LK C  YL  FP    I   +L++LW+AEG IP+     E+ A+ YL ELI
Sbjct: 419 LSYNDLPFYLKSCFFYLGHFPEDYSIHAHKLFRLWIAEGLIPHQGERMEDVAEDYLNELI 478

Query: 62  HRGFIQVSKRRSGGTIKACYVPSI---------------------AYTSLALMARKTEFV 100
            R  +Q  +    G +K C +  +                      +TSLA   R   + 
Sbjct: 479 QRNMVQAERMSVNGRVKQCRLHDLLRDLSTSKAKAQNFLQIPGDENFTSLARCRRHPIYS 538

Query: 101 SSIFSEEESLS----------NVKRSKSDHLALIHCENF-----------CKKFKHLRVL 139
            S  S     S           V R +  +    H   F            + F+ LR+L
Sbjct: 539 DSHLSSLGFFSPHLRSLLFFRVVTRVRYRYFIGRHVYGFYELSNANFDYISRNFRLLRIL 598

Query: 140 NLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSS-YIDHSPED 198
            L      + P  + +L +L YL L   +++ LPS L +L NLQTL++  + ++   P  
Sbjct: 599 ELEGISCGRIPSTIGDLIHLSYLGLKETNIQVLPSTLGSLCNLQTLDIARNLHLRIVPNV 658

Query: 199 IWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISG 258
           IW M+ L HL     +      +N   LK+L  +S +  S    +    L +++ L++ G
Sbjct: 659 IWNMRNLRHLYMCGQSGGFLRIDN---LKHLQTLSGIDVSRWKQNNSAHLTSLRKLKMRG 715

Query: 259 DLSYYHSGVSKSLCQLHKLECLKLVNEG----KMRQLSRM--------------ILSEYK 300
           +LS     +  S+  L +L  L L  EG     + QL  +              + S  +
Sbjct: 716 NLSLDTIAIFDSISALLQLRSLYLRAEGAEFPTLSQLGSLHSLVKLHLKGGITRLPSLQE 775

Query: 301 FPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHL 360
           FPP+L+QL+L  T L +  +  LE+LP L + +LK  SY + +L  +  + FPQL+ L  
Sbjct: 776 FPPNLSQLTLEYTHLEQVSIEVLEKLPKLSIFRLKAKSYSKEELG-ISANGFPQLEFLEF 834

Query: 361 KSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPELRQLLR 420
            S+  L E  + A A+P+LE   +  C  LR LP E   + SL +L +   Q   R  +R
Sbjct: 835 NSLESLTELKIEASALPRLEIFQIVNCKELRMLPAEMKLMTSLHELVV---QDMPRFFVR 891

Query: 421 AFEDMEWRKSQMV 433
             + ++ +K Q +
Sbjct: 892 RLQGVDLQKVQHI 904

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444301787|gb|AGD98930.1| NBS type disease resistance protein [Malus x domestica]

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 139/455 (30%), Positives = 217/455 (47%), Gaps = 58/455 (12%)

Query: 5   FSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNS---EETAKHYLKELI 61
            S  +LP++LK C +YL  FP     S  +L++LW+AEG IPY     E+ A+ YL ELI
Sbjct: 398 LSYYDLPYYLKFCFLYLGLFPEDYLFSARKLFRLWIAEGLIPYYDGRMEDLAEEYLNELI 457

Query: 62  HRGFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEF---------------------- 99
            R  +Q ++  +   +K C +  +        A+  EF                      
Sbjct: 458 DRNMVQAARLSANDRVKHCRLHDLVRDLCISKAKSVEFLYIHLKYGIFSPFPCSDSRARH 517

Query: 100 --VSSIFSEEESLS--NVKRSKSDHLALIHC----ENFCKKFKHLRVLNLGSAVLDQYPP 151
             + S FS    +S  N++      +  I C     + C++FK LRVL L    L + P 
Sbjct: 518 HAIYSGFSSSPYVSTPNLRSLLFFKVEQIECGISLSDVCRRFKLLRVLELEDMKLRRIPS 577

Query: 152 GLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLE-MPSSYIDHSPEDIWMMQKLMHLNF 210
            +  + +LKYL L   S++ LP  +  L NLQTL+ + ++ I   P+ +W M+ L HL  
Sbjct: 578 AIGEMIHLKYLGLRHCSIESLPEEIGWLSNLQTLDILENAKICRVPDVLWKMKSLRHLYM 637

Query: 211 GSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKS 270
                P   K     L++L  ++ ++  S        L +++ LR++G  +   + +  S
Sbjct: 638 --YVCPFAGKWRIDTLQHLQTLAGINIDSLRGINSANLISLRKLRLAGSFATNRAEIFYS 695

Query: 271 LCQL--------HKLECL--KLVNEGKMRQLSRMILSE--------YKFPPSLTQLSLSN 312
           L  L          ++ L   L     +R + ++ LS         ++FPP+L QL L  
Sbjct: 696 LANLLNLHSLSLKSMDSLFPSLSALSSLRHVIKLHLSGGISKLPNPHEFPPNLNQLILHQ 755

Query: 313 TELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMG 372
           + L  +P+  LE+LP+L VL+LK +SY  +KL     + FPQL+ L L+ +  LEE  + 
Sbjct: 756 SRLENNPLEILEKLPYLFVLRLKHSSYRGKKLK-FSANGFPQLEYLELEFLDSLEELEVE 814

Query: 373 AGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLE 407
             AMPKL SL +  C  LR LPEE   IKSL  L+
Sbjct: 815 ESAMPKLRSLQITYCQKLRMLPEE---IKSLTTLQ 846

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567194|ref|XP_003551806.1| PREDICTED: disease resistance protein RPP13-like [Glycine max]

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 137/465 (29%), Positives = 217/465 (46%), Gaps = 62/465 (13%)

Query: 5   FSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFI-PYNS--------EETAKH 55
            S   LP  LK C +Y   +P   EIS  QL Q W+AEGFI P  +        E+ A  
Sbjct: 289 LSYNNLPGRLKPCFLYFGIYPEDYEISARQLIQYWIAEGFIQPQKTGIADTTELEDVADF 348

Query: 56  YLKELIHRGFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEFV-----SSIFS----- 105
           YL EL+ R  +QV+KRRS G +K C +  +        ++  +F+     S+IF+     
Sbjct: 349 YLDELVDRSLVQVAKRRSDGGVKTCRIHDLLRDLCLSESKYDKFLEVCTNSNIFTVSNTN 408

Query: 106 ---------EEESLSNVKRSKS--------DHLALIHCENFCKKFKHLRVLNLGSAVLDQ 148
                     +  +S    +KS           A  +     K FK  RVL  G  ++ Q
Sbjct: 409 PRRMSFHWKPDSDVSETTFNKSCTRSMFIFGRDAKTYLVPILKNFKLARVL--GCDMIQQ 466

Query: 149 Y-----PPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQ 203
                    L+ + +L+YL++ +  L   P  +C+L NL+TL +   Y       IW ++
Sbjct: 467 VWSYSASRDLKRMIHLRYLRIEVEHL---PDCVCSLWNLETLHV--KYSGTVSSKIWTLK 521

Query: 204 KLMHLNF-GSITLPAPPKNNSSPLKNLIFISALHPSSCTPDI-LGRLPNVQTLRISGDLS 261
           +L HL   G+  LP P  N    L+ L+ +S  +P      +  G  P ++ L +    S
Sbjct: 522 RLRHLYLMGNGKLPLPKANRMENLQTLV-LSGDYPQQIIFLLNSGIFPRLRKLALRCYNS 580

Query: 262 YYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDP-- 319
               G+  SL +L  L  LK+     MR    ++L    FP +LT+++L +     DP  
Sbjct: 581 VEGPGMLPSLQRLSNLHSLKV-----MRG-CELLLDTNAFPSNLTKITLKDLHAFRDPQS 634

Query: 320 -MPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPK 378
            M TL  LP+L++LK+    + +  L  +G   FPQL++LH+ + + + +W +   AMP+
Sbjct: 635 LMKTLGRLPNLQILKVSFCMHNDIHLD-IGRGEFPQLQVLHM-TQINVRQWRLEKDAMPR 692

Query: 379 LESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPELRQLLRAFE 423
           L  L++  C  L +LPEE W + +L  + + WP  EL   L+  E
Sbjct: 693 LRHLLIEECYGLSELPEELWSMTALRLVHVSWPSQELANSLKNVE 737

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	478
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.355	0.187	0.308	3e-22
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.265	0.140	0.333	1.7e-21
TAIR|locus:2037639	907	AT1G58390 "AT1G58390" [Arabido	0.518	0.273	0.298	1.8e-21
TAIR|locus:2025916	906	AT1G59780 "AT1G59780" [Arabido	0.560	0.295	0.302	2.9e-21
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.259	0.136	0.344	2.2e-20
TAIR|locus:504956182	1049	AT1G58848 [Arabidopsis thalian	0.294	0.134	0.389	2.4e-19
TAIR|locus:2826978	1049	AT1G59218 [Arabidopsis thalian	0.294	0.134	0.389	2.4e-19
TAIR|locus:504956186	1138	AT1G58602 [Arabidopsis thalian	0.282	0.118	0.383	2.8e-18
TAIR|locus:2037623	899	AT1G58410 [Arabidopsis thalian	0.556	0.295	0.275	1.4e-17
TAIR|locus:2197409	727	LOV1 "LOCUS ORCHESTRATING VICT	0.476	0.313	0.275	1.2e-13

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 3.0e-22, Sum P(3) = 3.0e-22
 Identities = 54/175 (30%), Positives = 91/175 (52%)

Query:   245 LGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPS 304
             L  L N++TL     L  Y           H +   +L   G   ++S+ I  +++FPP 
Sbjct:   716 LRELRNLETLNFLFSLETYMVDYMGEFVLDHFIHLKQL---GLAVRMSK-IPDQHQFPPH 771

Query:   305 LTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSML 364
             L  L L    + EDPMP LE+L HL+ ++L + ++L  ++ C     FPQL ++ +    
Sbjct:   772 LVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVC-SKGGFPQLCVIEISKES 830

Query:   365 WLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPELRQLL 419
              LEEW +  G+MP L +L ++ C  L++LP+    I SL +L++   + E ++ L
Sbjct:   831 ELEEWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYITSLKELKIEGMKREWKEKL 885

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
 Identities = 43/129 (33%), Positives = 76/129 (58%)

Query:   291 LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCS 350
             LS+ I  +++ PP +  + L    + EDPMP LE+L HL+ ++L++ +++ R++ C    
Sbjct:   750 LSK-IPDQHQLPPHIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVC-SKG 807

Query:   351 SFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHW 410
              FPQL+ L +     LEEW +  G+MP L  LI++ C  L +LP+    + SL +L++  
Sbjct:   808 GFPQLRALQISEQSELEEWIVEEGSMPCLRDLIIHSCEKLEELPDGLKYVTSLKELKIEG 867

Query:   411 PQPELRQLL 419
              + E ++ L
Sbjct:   868 MKREWKEKL 876

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
 Identities = 82/275 (29%), Positives = 125/275 (45%)

Query:   150 PPGLENLFYLKYLKLNIXXXXX--XXXXXXXXXXXXXXEMPSSYIDHSPEDIWMMQKLMH 207
             P G+ NL +L+YL L                       ++ + +I   P+    M +L +
Sbjct:   602 PFGIGNLIHLRYLSLQDAKVSHLPSSLGNLMLLIYLNLDVDTEFI-FVPDVFMRMHELRY 660

Query:   208 LNFGSITLPAPPK---NNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYH 264
             L    + +    +    N   L+ L++ S  H SS   D+ G +  + TL I        
Sbjct:   661 LKL-PLHMHKKTRLSLRNLVKLETLVYFSTWHSSS--KDLCG-MTRLMTLAIRLTRVTST 716

Query:   265 SGVSKSLCQLHKLECLKLV--NEGKMRQ---------LSRMILSEYK-----FPPSLTQL 308
               +S S+  L  LE L +V  +  KMR+         L  ++L  Y      FP  LT +
Sbjct:   717 ETLSASISGLRNLEYLYIVGTHSKKMREEGIVLDFIHLKHLLLDLYMPRQQHFPSRLTFV 776

Query:   309 SLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEE 368
              LS   L EDPMP LE+L HL+ + L + SY  R++ C G   FPQLK L +  +   EE
Sbjct:   777 KLSECGLEEDPMPILEKLLHLKGVILLKGSYCGRRMVCSG-GGFPQLKKLEIVGLNKWEE 835

Query:   369 WTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSL 403
             W +  G+MP LE+L +  C  L+++P+    I SL
Sbjct:   836 WLVEEGSMPLLETLSILDCEELKEIPDGLRFIYSL 870

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
 Identities = 87/288 (30%), Positives = 136/288 (47%)

Query:   136 LRVLNLGSAVLD--QYPPGLENLFYLKYLKLNIXXXXXXXXXXXXXXXXXXXEMP--SSY 191
             LRVL+L  A     + P  +  L +LKYL L                      +   S  
Sbjct:   575 LRVLDLDGAKFKGGKLPSSIGKLIHLKYLSLYQASVTYLPSSLRNLKSLLYLNLRINSGQ 634

Query:   192 IDHSPEDIWMMQKLMHLN--FGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLP 249
             + + P     M +L +L+  +   +L      N   L+ LI  S    SS T   L R+ 
Sbjct:   635 LINVPNVFKEMLELRYLSLPWERSSLTKLELGNLLKLETLINFST-KDSSVTD--LHRMT 691

Query:   250 NVQTLRI--SGDLSYYHSGVSKSLCQLHKLECLKLV-NEGKM-----RQLSRMILSEYK- 300
              ++TL+I  SG+   +   +S +L  L  LE L +  +E  +     + + R +L + + 
Sbjct:   692 KLRTLQILISGE-GLHMETLSSALSMLGHLEDLTVTPSENSVQFKHPKLIYRPMLPDVQH 750

Query:   301 FPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHL 360
             FP  LT +SL    L EDPMPTLE+L  L+V+ L  N+Y+ R++ C G   FP L  L +
Sbjct:   751 FPSHLTTISLVYCFLEEDPMPTLEKLLQLKVVSLWYNAYVGRRMVCTG-GGFPPLHRLEI 809

Query:   361 KSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLEL 408
               +  LEEW +  G+MP L +L +  C  L+++P+    I SL +L +
Sbjct:   810 WGLDALEEWIVEEGSMPLLHTLHIVDCKKLKEIPDGLRFISSLKELAI 857

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 2.2e-20, Sum P(3) = 2.2e-20
 Identities = 43/125 (34%), Positives = 72/125 (57%)

Query:   295 ILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQ 354
             I  +++FPP L  + L +  + EDPMP LE+L HL+ + L   +++ R++ C     FPQ
Sbjct:   762 IPDQHQFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVC-SKGGFPQ 820

Query:   355 LKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPE 414
             L  L +     LEEW +  G+MP L +L ++ C  L++LP+    I SL +L++   + E
Sbjct:   821 LCALGISGESELEEWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKIREMKRE 880

Query:   415 LRQLL 419
              ++ L
Sbjct:   881 WKEKL 885

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
 Identities = 58/149 (38%), Positives = 79/149 (53%)

Query:   246 GRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSL 305
             G  P +Q L I G   +    V +S   +  L  L + +  K++QL      E+  P  L
Sbjct:   823 GGFPQLQKLSIKGLEEWEDWKVEES--SMPVLHTLDIRDCRKLKQLP----DEH-LPSHL 875

Query:   306 TQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLW 365
             T +SL    L EDPMPTLE L HL+ L+L   S+  R + C G S FPQL  L L  +  
Sbjct:   876 TSISLFFCCLEEDPMPTLERLVHLKELQLLFRSFSGRIMVCAG-SGFPQLHKLKLSELDG 934

Query:   366 LEEWTMGAGAMPKLESLILNPCAYLRKLP 394
             LEEW +  G+MP+L +L +  C  L+KLP
Sbjct:   935 LEEWIVEDGSMPQLHTLEIRRCPKLKKLP 963

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
 Identities = 58/149 (38%), Positives = 79/149 (53%)

Query:   246 GRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSL 305
             G  P +Q L I G   +    V +S   +  L  L + +  K++QL      E+  P  L
Sbjct:   823 GGFPQLQKLSIKGLEEWEDWKVEES--SMPVLHTLDIRDCRKLKQLP----DEH-LPSHL 875

Query:   306 TQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLW 365
             T +SL    L EDPMPTLE L HL+ L+L   S+  R + C G S FPQL  L L  +  
Sbjct:   876 TSISLFFCCLEEDPMPTLERLVHLKELQLLFRSFSGRIMVCAG-SGFPQLHKLKLSELDG 934

Query:   366 LEEWTMGAGAMPKLESLILNPCAYLRKLP 394
             LEEW +  G+MP+L +L +  C  L+KLP
Sbjct:   935 LEEWIVEDGSMPQLHTLEIRRCPKLKKLP 963

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 2.8e-18, Sum P(3) = 2.8e-18
 Identities = 56/146 (38%), Positives = 76/146 (52%)

Query:   249 PNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQL 308
             P +Q L ISG   +    V +S   L  L  L + +  K++QL      E+  P  LT +
Sbjct:   824 PQLQKLSISGLKEWEDWKVEESSMPL--LLTLNIFDCRKLKQLP----DEH-LPSHLTAI 876

Query:   309 SLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEE 368
             SL    L EDP+PTLE L HL+ L L +     R + C G   FPQL  L L  +  LEE
Sbjct:   877 SLKKCGL-EDPIPTLERLVHLKELSLSE--LCGRIMVCTG-GGFPQLHKLDLSELDGLEE 932

Query:   369 WTMGAGAMPKLESLILNPCAYLRKLP 394
             W +  G+MP+L +L +  C  L+KLP
Sbjct:   933 WIVEDGSMPRLHTLEIRRCLKLKKLP 958

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2037623 AT1G58410 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
 Identities = 77/279 (27%), Positives = 119/279 (42%)

Query:   132 KFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIXXXXXXX-XXXXXXXXXXXXEMPSS 190
             K  HLR L+L  A +   P  L NL  L YL +                      E+P  
Sbjct:   600 KLIHLRYLSLKDAKVSHLPSSLRNLVLLIYLDIRTDFTDIFVPNVFMGMRELRYLELPRF 659

Query:   191 YIDHSPEDIWMMQKLMHL-NFGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGR 247
               + +  ++  ++KL  L NF + +           L+ L+ I +   S  + +  + G 
Sbjct:   660 MHEKTKLELSNLEKLEALENFSTKSSSLEDLRGMVRLRTLVIILSEGTSLQTLSASVCG- 718

Query:   248 LPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQ 307
             L +++  +I  +      G  + +     L+ L L  E  M +L ++       P  LT 
Sbjct:   719 LRHLENFKIMENAGVNRMGEERMVLDFTYLKKLTLSIE--MPRLPKI----QHLPSHLTV 772

Query:   308 LSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLE 367
             L LS   L EDPMP LE+L  L+ L L   S+  RK+ C     FPQL+ L L      E
Sbjct:   773 LDLSYCCLEEDPMPILEKLLELKDLSLDYLSFSGRKMVC-SAGGFPQLRKLALDEQEEWE 831

Query:   368 EWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKL 406
             EW +  G+M +L +L +     L++LP+    I SL  L
Sbjct:   832 EWIVEEGSMSRLHTLSIWSST-LKELPDGLRFIYSLKNL 869

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2197409 LOV1 "LOCUS ORCHESTRATING VICTORIN EFFECTS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
 Identities = 68/247 (27%), Positives = 105/247 (42%)

Query:   135 HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIXXXXXXXXXXXXXXXXXXXEMPSSYIDH 194
             HLR L+L  A +   P  L NL  L YL L                     ++P S  D 
Sbjct:   486 HLRFLSLHRAWISHLPSSLRNLKLLLYLNLGFNGMVHVPNVLKEMQELRYLQLPMSMHDK 545

Query:   195 SP---EDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNL-IFISALHPSSCTPDILGRLPN 250
             +     D+  ++ LM  NF +         + + L+ L +FI+    S      LG+L +
Sbjct:   546 TKLELSDLVNLESLM--NFSTKYASVMDLLHMTKLRELSLFITD-GSSDTLSSSLGQLRS 602

Query:   251 VQTLRISGDLS---YYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQ 307
             ++ L +         YH G     C +H  E L+L        + R    +Y F P L+ 
Sbjct:   603 LEVLHLYDRQEPRVAYHGGEIVLNC-IHLKE-LELAIH-----MPRFP-DQYLFHPHLSH 654

Query:   308 LSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLE 367
             + L    + EDP+P LE L HL+ + L   +++ R++ C     FPQL  L L+ +  LE
Sbjct:   655 IYLWCCSMEEDPIPILERLLHLKSVILTFGAFVGRRMVC-SKGGFPQLCFLKLEELEELE 713

Query:   368 EWTMGAG 374
             EW +  G
Sbjct:   714 EWIVEEG 720

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0002238 "response to molecule of fungal origin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	478
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	6e-06

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 21/42 (50%), Positives = 25/42 (59%)

Query: 5   FSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIP 46
            S   LP HLK C +YL  FP    I  EQL +LW+AEGF+ 
Sbjct: 240 LSYDNLPMHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGFVI 281

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	478
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.91
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.86
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.83
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.78
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.76
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.75
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.67
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.6
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.59
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.58
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.58
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.55
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.46
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.42
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.39
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.29
KOG4341	483	consensus F-box protein containing LRR [General fu	99.21
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.05
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.02
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.97
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.97
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.96
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.96
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.84
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.82
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.8
KOG4341	483	consensus F-box protein containing LRR [General fu	98.75
PLN03150	623	hypothetical protein; Provisional	98.64
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.61
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.59
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.51
PLN03150	623	hypothetical protein; Provisional	98.41
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.36
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.33
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.3
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.24
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.19
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.18
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.16
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.11
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.08
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.06
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.93
PRK15386	426	type III secretion protein GogB; Provisional	97.9
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.79
PRK15386	426	type III secretion protein GogB; Provisional	97.79
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.73
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.63
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.56
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.43
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.4
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.37
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.28
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.84
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.58
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.44
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.31
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.86
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.8
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.47
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.42
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.06
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.01
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.15
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.73
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.68
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.65
smart00370	26	LRR Leucine-rich repeats, outliers.	91.65
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.74
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.56
smart00370	26	LRR Leucine-rich repeats, outliers.	89.56
KOG4308	478	consensus LRR-containing protein [Function unknown	87.41

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=9e-43  Score=364.85  Aligned_cols=204  Identities=26%  Similarity=0.442  Sum_probs=177.1

Q ss_pred             eecccCCChhhHHHHHhHhcccCCCceechhHHHHHHHHcCCCC-----CChHHHHHHHHHHHHHccceeeeecCCCCcE
Q 047959            3 QIFSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIP-----YNSEETAKHYLKELIHRGFIQVSKRRSGGTI   77 (478)
Q Consensus         3 ~klSY~~L~~~~k~cFl~~a~Fp~~~~i~~~~Li~~w~~~g~~~-----~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~   77 (478)
                      +++|||.||+++|.||+|||+|||||+|+++.||.+|+||||+.     ..+++.|.+|+++|+++++++.....  |+.
T Consensus       401 LklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~  478 (889)
T KOG4658|consen  401 LKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRK  478 (889)
T ss_pred             hhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cce
Confidence            68999999988999999999999999999999999999999997     78899999999999999999987754  777


Q ss_pred             eEEEeCHHHHHHHHHHhh-----hcCcEeeccCCC--------CccC-ceec--------------CCCCCeeee---c-
Q 047959           78 KACYVPSIAYTSLALMAR-----KTEFVSSIFSEE--------ESLS-NVKR--------------SKSDHLALI---H-  125 (478)
Q Consensus        78 ~~~~mhdli~dl~~~~~~-----~e~~~~~~~~~~--------~~~~-~~r~--------------~~~~~lr~l---~-  125 (478)
                      ..|+|||+|||||.++|+     +|+.+.   ..+        ...| .+||              ..+++++||   + 
T Consensus       479 ~~~kmHDvvRe~al~ias~~~~~~e~~iv---~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n  555 (889)
T KOG4658|consen  479 ETVKMHDVVREMALWIASDFGKQEENQIV---SDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRN  555 (889)
T ss_pred             eEEEeeHHHHHHHHHHhccccccccceEE---ECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeec
Confidence            899999999999999999     666433   322        1112 4455              667789888   2 


Q ss_pred             -------CccccCCCCeEeEEEecCCC-CCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCC-cCcccc
Q 047959          126 -------CENFCKKFKHLRVLNLGSAV-LDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSS-YIDHSP  196 (478)
Q Consensus       126 -------~~~~~~~~~~L~~L~L~~~~-l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~-~l~~lp  196 (478)
                             ..+||..++.||+|||++|. +..+|++|+.+-+||||+++++.+..+|..+++|++|.+|++..+ .+..+|
T Consensus       556 ~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~  635 (889)
T KOG4658|consen  556 SDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP  635 (889)
T ss_pred             chhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc
Confidence                   35678999999999999887 779999999999999999999999999999999999999999999 666666


Q ss_pred             hhhhccccCcEEEee
Q 047959          197 EDIWMMQKLMHLNFG  211 (478)
Q Consensus       197 ~~i~~l~~L~~L~l~  211 (478)
                      .....|++||+|.+.
T Consensus       636 ~i~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  636 GILLELQSLRVLRLP  650 (889)
T ss_pred             chhhhcccccEEEee
Confidence            666679999999994

>PLN03210 Resistant to P

Probab=100.00  E-value=2.6e-35  Score=324.53  Aligned_cols=375  Identities=18%  Similarity=0.154  Sum_probs=213.5

Q ss_pred             ceecccCCChh-hHHHHHhHhcccCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHHccceeeeecCCCCcEeEE
Q 047959            2 RQIFSVMELPF-HLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFIQVSKRRSGGTIKAC   80 (478)
Q Consensus         2 ~~klSY~~L~~-~~k~cFl~~a~Fp~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~   80 (478)
                      .+|+|||+|++ +.|.||+|||+||+++.+   +.+..|.+.+.+.      ++..++.|+++||++...       ..+
T Consensus       425 ~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~-------~~~  488 (1153)
T PLN03210        425 TLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLD------VNIGLKNLVDKSLIHVRE-------DIV  488 (1153)
T ss_pred             HHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCC------chhChHHHHhcCCEEEcC-------CeE
Confidence            37899999987 599999999999998654   3466777776552      444599999999998743       249


Q ss_pred             EeCHHHHHHHHHHhhhcCcEeeccCCCCccC----------------ceec------------------CCCCCeeeec-
Q 047959           81 YVPSIAYTSLALMARKTEFVSSIFSEEESLS----------------NVKR------------------SKSDHLALIH-  125 (478)
Q Consensus        81 ~mhdli~dl~~~~~~~e~~~~~~~~~~~~~~----------------~~r~------------------~~~~~lr~l~-  125 (478)
                      +|||++|+||+.+++++..   ..++....|                +++.                  ..+++|+.|. 
T Consensus       489 ~MHdLl~~~~r~i~~~~~~---~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~  565 (1153)
T PLN03210        489 EMHSLLQEMGKEIVRAQSN---EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKF  565 (1153)
T ss_pred             EhhhHHHHHHHHHHHhhcC---CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEE
Confidence            9999999999999987631   011110011                1111                  3445555441 


Q ss_pred             ----C-----------ccccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCC
Q 047959          126 ----C-----------ENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSS  190 (478)
Q Consensus       126 ----~-----------~~~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~  190 (478)
                          +           +.+..-...||.|.+.++.++.+|..+ ...+|+.|++.++.+..+|..+..+++|++|+++++
T Consensus       566 ~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~  644 (1153)
T PLN03210        566 YTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGS  644 (1153)
T ss_pred             ecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCC
Confidence                0           111111234566666665555555554 345566666666555555555555566666666555


Q ss_pred             -cCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhH
Q 047959          191 -YIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGV  267 (478)
Q Consensus       191 -~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l  267 (478)
                       .+..+|. +..+++|+.|++++|.....+|..++.+++|+.|++.+|.  ...|..+ ++++|+.|++++|.  ....+
T Consensus       645 ~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~--~L~~~  720 (1153)
T PLN03210        645 KNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS--RLKSF  720 (1153)
T ss_pred             CCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC--Ccccc
Confidence             4555553 4555566666665444444555555555566666655554  3333332 45555555555542  11111


Q ss_pred             HHhccCCCCCCEEEEEecCcccccCcccccc------------------------------ccCCCCceEEEEEeecCCC
Q 047959          268 SKSLCQLHKLECLKLVNEGKMRQLSRMILSE------------------------------YKFPPSLTQLSLSNTELVE  317 (478)
Q Consensus       268 ~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~------------------------------~~~~~~L~~L~l~~~~~~~  317 (478)
                      +.   ..++|+.|++++ +.+..+|.   .+                              .. +++|+.|++++|....
T Consensus       721 p~---~~~nL~~L~L~~-n~i~~lP~---~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~-~~sL~~L~Ls~n~~l~  792 (1153)
T PLN03210        721 PD---ISTNISWLDLDE-TAIEEFPS---NLRLENLDELILCEMKSEKLWERVQPLTPLMTML-SPSLTRLFLSDIPSLV  792 (1153)
T ss_pred             cc---ccCCcCeeecCC-Cccccccc---cccccccccccccccchhhccccccccchhhhhc-cccchheeCCCCCCcc
Confidence            11   112333333333 22222222   10                              01 2344555555554334


Q ss_pred             CCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCc---------------------ccceeEEecCCCCCceeeCCCcc
Q 047959          318 DPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFP---------------------QLKILHLKSMLWLEEWTMGAGAM  376 (478)
Q Consensus       318 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~---------------------~L~~L~L~~~~~l~~l~~~~~~~  376 (478)
                      ..+..++++++|+.|+|++|......+.   ...++                     +|+.|+|++ +.++.+|...+.+
T Consensus       793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~---~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~-n~i~~iP~si~~l  868 (1153)
T PLN03210        793 ELPSSIQNLHKLEHLEIENCINLETLPT---GINLESLESLDLSGCSRLRTFPDISTNISDLNLSR-TGIEEVPWWIEKF  868 (1153)
T ss_pred             ccChhhhCCCCCCEEECCCCCCcCeeCC---CCCccccCEEECCCCCccccccccccccCEeECCC-CCCccChHHHhcC
Confidence            4444455555555555554432222111   11233                     455555555 3455666666778


Q ss_pred             cccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          377 PKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       377 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      ++|+.|++++|+.++.+|..+..+++|+.+++++|+
T Consensus       869 ~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        869 SNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            899999999999999988888889999999999987

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=2.4e-26  Score=253.08  Aligned_cols=224  Identities=22%  Similarity=0.292  Sum_probs=130.9

Q ss_pred             CCCeEeEEEecCCCCC-cCCccCCCCCCCceEeecCCCCC-ccchhhhCCCCCcEEeCCCCcC-cccchhhhccccCcEE
Q 047959          132 KFKHLRVLNLGSAVLD-QYPPGLENLFYLKYLKLNIPSLK-CLPSLLCTLLNLQTLEMPSSYI-DHSPEDIWMMQKLMHL  208 (478)
Q Consensus       132 ~~~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l-~~lp~~i~~l~~L~~L  208 (478)
                      .+++|++|+|++|.++ .+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.+ ..+|..++++++|++|
T Consensus       138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  217 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI  217 (968)
T ss_pred             ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence            4555556666665554 55555666666666666666654 5566666666666666666643 3456666666666666


Q ss_pred             EeeCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecC
Q 047959          209 NFGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEG  286 (478)
Q Consensus       209 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~  286 (478)
                      ++++|.....+|..++++++|++|++.+|.  ...+..++++++|+.|++++|  ...+.++..+..+++|+.|+++++.
T Consensus       218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN--KLSGPIPPSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC--eeeccCchhHhhccCcCEEECcCCe
Confidence            666665555666666666666666666655  445555666666666666665  3444455555566666666666522


Q ss_pred             cccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecC
Q 047959          287 KMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSM  363 (478)
Q Consensus       287 ~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  363 (478)
                      ....+|.   ++.. +++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..  +..+++|+.|+++++
T Consensus       296 l~~~~p~---~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~~~~L~~L~Ls~n  366 (968)
T PLN00113        296 LSGEIPE---LVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN--LGKHNNLTVLDLSTN  366 (968)
T ss_pred             eccCCCh---hHcC-CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH--HhCCCCCcEEECCCC
Confidence            2224555   5555 666666666666655555555566666666666666555433322  344555555555543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=3.1e-26  Score=252.20  Aligned_cols=283  Identities=22%  Similarity=0.272  Sum_probs=218.7

Q ss_pred             CCCCeeeec----------CccccCCCCeEeEEEecCCCCC-cCCccCCCCCCCceEeecCCCCC-ccchhhhCCCCCcE
Q 047959          117 KSDHLALIH----------CENFCKKFKHLRVLNLGSAVLD-QYPPGLENLFYLKYLKLNIPSLK-CLPSLLCTLLNLQT  184 (478)
Q Consensus       117 ~~~~lr~l~----------~~~~~~~~~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~  184 (478)
                      .+++|+.|+          +..++..+++|++|+|++|.++ .+|.  +.+++|++|++++|.+. .+|..++++++|++
T Consensus        91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~  168 (968)
T PLN00113         91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV  168 (968)
T ss_pred             CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence            466777772          2334457888888888888876 5553  46778888888888887 78888889999999


Q ss_pred             EeCCCCcC-cccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCC
Q 047959          185 LEMPSSYI-DHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLS  261 (478)
Q Consensus       185 L~l~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~  261 (478)
                      |++++|.+ ..+|..++++++|++|++++|.+...+|..++++++|++|++..+.  ...+..++++++|+.|++++|  
T Consensus       169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n--  246 (968)
T PLN00113        169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN--  246 (968)
T ss_pred             EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc--
Confidence            99999855 5778888899999999998888877888888889999999988887  567788889999999999888  


Q ss_pred             cchhhHHHhccCCCCCCEEEEEecCcc-cccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCccc
Q 047959          262 YYHSGVSKSLCQLHKLECLKLVNEGKM-RQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYL  340 (478)
Q Consensus       262 ~~~~~l~~~l~~~~~L~~L~l~~~~~l-~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  340 (478)
                      ...+.++..+..+++|+.|++++ +.+ ..+|.   .+.. +++|+.|++++|.+.+..+..+.++++|+.|++++|.+.
T Consensus       247 ~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~---~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~  321 (968)
T PLN00113        247 NLTGPIPSSLGNLKNLQYLFLYQ-NKLSGPIPP---SIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT  321 (968)
T ss_pred             eeccccChhHhCCCCCCEEECcC-CeeeccCch---hHhh-ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence            56667788888899999999987 444 46777   7787 899999999999888777888888999999999988887


Q ss_pred             CceeEEeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEec
Q 047959          341 ERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHW  410 (478)
Q Consensus       341 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  410 (478)
                      +..+..  +..+++|+.|++++|.-...+|...+.+++|+.|++++|.....+|..+..+++|+.|++.+
T Consensus       322 ~~~~~~--~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~  389 (968)
T PLN00113        322 GKIPVA--LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS  389 (968)
T ss_pred             CcCChh--HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcC
Confidence            665544  67789999999998654446666667777777777777765444444444444444444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.91  E-value=6.4e-27  Score=224.66  Aligned_cols=274  Identities=22%  Similarity=0.251  Sum_probs=243.7

Q ss_pred             CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchh-hhCCCCCcEEeCCCCcCcccchhhhccccCcEEE
Q 047959          131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLN  209 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  209 (478)
                      -+++.|.+|||++|.+++.|..+...+++-+|+|++|+|.++|.+ +-+|..|-.||+++|++..+|+.+..+..|+.|+
T Consensus       100 F~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~  179 (1255)
T KOG0444|consen  100 FRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLK  179 (1255)
T ss_pred             cccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhh
Confidence            467889999999999999999999999999999999999999976 4589999999999999999999999999999999


Q ss_pred             eeCCCCCCCCCCCCCCCCCCcEeCcccCC---CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecC
Q 047959          210 FGSITLPAPPKNNSSPLKNLIFISALHPS---SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEG  286 (478)
Q Consensus       210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~  286 (478)
                      +++|.+...--..+..+++|++|.+++..   ..+|..+..+.||+.++++.|   ....+|..+.++++|+.|++++ +
T Consensus       180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~-N  255 (1255)
T KOG0444|consen  180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSG-N  255 (1255)
T ss_pred             cCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCc-C
Confidence            98886654333456678999999999887   788999999999999999997   6667889999999999999998 9


Q ss_pred             cccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCC
Q 047959          287 KMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWL  366 (478)
Q Consensus       287 ~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l  366 (478)
                      .++.+..   ..+. ..+|+.|+++.|+++ ..|..+.++++|+.|.+.+|+++-+.++.. ++.+.+|+.+...+ +.+
T Consensus       256 ~iteL~~---~~~~-W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG-IGKL~~Levf~aan-N~L  328 (1255)
T KOG0444|consen  256 KITELNM---TEGE-WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG-IGKLIQLEVFHAAN-NKL  328 (1255)
T ss_pred             ceeeeec---cHHH-Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccc-hhhhhhhHHHHhhc-ccc
Confidence            9998887   7788 899999999999974 567889999999999999999876666544 89999999999998 689


Q ss_pred             CceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCcHHHH
Q 047959          367 EEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPELR  416 (478)
Q Consensus       367 ~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~  416 (478)
                      +-+|.....++.|+.|.+..|. +-.+|+++.-++.|+.|++..+|+..+
T Consensus       329 ElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVM  377 (1255)
T KOG0444|consen  329 ELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVM  377 (1255)
T ss_pred             ccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccC
Confidence            9999999999999999999775 567899999999999999999984443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.86  E-value=9.5e-25  Score=209.85  Aligned_cols=269  Identities=21%  Similarity=0.225  Sum_probs=233.1

Q ss_pred             CCCCeEeEEEecCCCCC--cCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhh-hccccCcE
Q 047959          131 KKFKHLRVLNLGSAVLD--QYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDI-WMMQKLMH  207 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~  207 (478)
                      +.++.||.++++.|++.  .+|..+.++..|..|+|++|++++.|..+..-+++-+|++++|+|..+|..+ .+++.|-.
T Consensus        75 s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf  154 (1255)
T KOG0444|consen   75 SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF  154 (1255)
T ss_pred             ccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence            67788999999999977  8999999999999999999999999999999999999999999999999664 58999999


Q ss_pred             EEeeCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEec
Q 047959          208 LNFGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE  285 (478)
Q Consensus       208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~  285 (478)
                      ||+++|.+ ..+|+.+..+.+||+|.++++.  ......+..+++|+.|.+++.. .....+|.++..+.+|..++++. 
T Consensus       155 LDLS~NrL-e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~-  231 (1255)
T KOG0444|consen  155 LDLSNNRL-EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSE-  231 (1255)
T ss_pred             hccccchh-hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccc-
Confidence            99977654 4688899999999999999987  5556667788899999999875 56677889999999999999996 


Q ss_pred             CcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCC
Q 047959          286 GKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLW  365 (478)
Q Consensus       286 ~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  365 (478)
                      +.+..+|.   .+.+ +++|+.|+|++|.++. .....+...+|++|+++.|.++... ..  +..+++|+.|.+.+ +.
T Consensus       232 N~Lp~vPe---cly~-l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP-~a--vcKL~kL~kLy~n~-Nk  302 (1255)
T KOG0444|consen  232 NNLPIVPE---CLYK-LRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLP-DA--VCKLTKLTKLYANN-NK  302 (1255)
T ss_pred             cCCCcchH---HHhh-hhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccch-HH--HhhhHHHHHHHhcc-Cc
Confidence            99999999   8888 9999999999999864 3335567789999999999987543 22  57789999999987 45


Q ss_pred             CC--ceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          366 LE--EWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       366 l~--~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      ++  .+|..++.+..|+.+...+| .++-+|+++.+|+.|+.|.++.+.
T Consensus       303 L~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~Nr  350 (1255)
T KOG0444|consen  303 LTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNR  350 (1255)
T ss_pred             ccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccc
Confidence            54  89999999999999999875 689999999999999999998764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.85  E-value=6.6e-23  Score=195.89  Aligned_cols=271  Identities=20%  Similarity=0.235  Sum_probs=160.3

Q ss_pred             CCCCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccchhhh-ccccCcE
Q 047959          131 KKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPEDIW-MMQKLMH  207 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~i~-~l~~L~~  207 (478)
                      +-++.||+|||+.|.++.+|.. +..-.++++|+|++|.|+.+. ..|..+.+|.+|.|+.|.+..+|.... +|++|+.
T Consensus       146 ~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~  225 (873)
T KOG4194|consen  146 SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLES  225 (873)
T ss_pred             HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhh
Confidence            5567788888888888877765 666678888888888888654 357778888888888888888886544 4888888


Q ss_pred             EEeeCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEec
Q 047959          208 LNFGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE  285 (478)
Q Consensus       208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~  285 (478)
                      |++.+|.+...--..|..+.+|+.|.+..+.  .-.-..|-.|.++++|++..|  .....-...+.+++.|+.|+++. 
T Consensus       226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N--~l~~vn~g~lfgLt~L~~L~lS~-  302 (873)
T KOG4194|consen  226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN--RLQAVNEGWLFGLTSLEQLDLSY-  302 (873)
T ss_pred             hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc--hhhhhhcccccccchhhhhccch-
Confidence            8887775543323446777777777777776  222233556666777777766  23333334455666666666665 


Q ss_pred             CcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCC
Q 047959          286 GKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLW  365 (478)
Q Consensus       286 ~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  365 (478)
                      +.+..+..   .--.|.++|+.|+|++|.++......+..+..|++|+|++|.+....-. . +.++.+|++|+|++ +.
T Consensus       303 NaI~rih~---d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~-a-f~~lssL~~LdLr~-N~  376 (873)
T KOG4194|consen  303 NAIQRIHI---DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEG-A-FVGLSSLHKLDLRS-NE  376 (873)
T ss_pred             hhhheeec---chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhh-H-HHHhhhhhhhcCcC-Ce
Confidence            55554432   1112256666666666666555555555555566666655554322111 1 34445555555554 22


Q ss_pred             CCcee----eCCCcccccceeEEecCCCCCCCcc-ccCCCCCCCEEEEecC
Q 047959          366 LEEWT----MGAGAMPKLESLILNPCAYLRKLPE-EQWCIKSLCKLELHWP  411 (478)
Q Consensus       366 l~~l~----~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c  411 (478)
                      +....    ..+..+++|++|++.+|. ++.+|. .+.++++|+.|++.++
T Consensus       377 ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  377 LSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDN  426 (873)
T ss_pred             EEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCC
Confidence            22110    011235555555555542 344442 3445555555555443

>PLN03210 Resistant to P

Probab=99.85  E-value=6.8e-21  Score=210.61  Aligned_cols=270  Identities=21%  Similarity=0.240  Sum_probs=206.0

Q ss_pred             ccccCCCCeEeEEEecCCC------CC-cCCccCCCCC-CCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchh
Q 047959          127 ENFCKKFKHLRVLNLGSAV------LD-QYPPGLENLF-YLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPED  198 (478)
Q Consensus       127 ~~~~~~~~~L~~L~L~~~~------l~-~lp~~~~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~  198 (478)
                      ...|..|++|+.|.+..+.      +. .+|..+..++ +||+|.+.++.++.+|..+ ...+|+.|++.++.+..+|.+
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~  629 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG  629 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc
Confidence            3457889999999997653      22 5777777765 7999999999999999887 578999999999999999999


Q ss_pred             hhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCC
Q 047959          199 IWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHK  276 (478)
Q Consensus       199 i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~  276 (478)
                      +..+++|+.|+++++.....+| .+..+++|++|++.+|.  ...|..++++++|+.|++++|  .....+|..+ ++++
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c--~~L~~Lp~~i-~l~s  705 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC--ENLEILPTGI-NLKS  705 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC--CCcCccCCcC-CCCC
Confidence            9999999999997776556666 48889999999999987  778888999999999999998  4556666655 7899


Q ss_pred             CCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCc---e---eEEeCCC
Q 047959          277 LECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLER---K---LACVGCS  350 (478)
Q Consensus       277 L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~---~---~~~~~~~  350 (478)
                      |+.|++++|..+..+|.       ..++|+.|++++|.+.. .+.. ..+++|+.|.+.++.....   .   .... ..
T Consensus       706 L~~L~Lsgc~~L~~~p~-------~~~nL~~L~L~~n~i~~-lP~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~-~~  775 (1153)
T PLN03210        706 LYRLNLSGCSRLKSFPD-------ISTNISWLDLDETAIEE-FPSN-LRLENLDELILCEMKSEKLWERVQPLTPLM-TM  775 (1153)
T ss_pred             CCEEeCCCCCCcccccc-------ccCCcCeeecCCCcccc-cccc-ccccccccccccccchhhccccccccchhh-hh
Confidence            99999999888888875       15689999999998643 2322 2567777777764321100   0   0000 22


Q ss_pred             CCcccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          351 SFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       351 ~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      .+++|+.|++++|+.+..+|...+.+++|+.|++++|..++.+|..+ ++++|+.|++++|.
T Consensus       776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~  836 (1153)
T PLN03210        776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS  836 (1153)
T ss_pred             ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence            34677777777777777777777777777777777777777777655 57777777777775

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.83  E-value=4.3e-22  Score=190.33  Aligned_cols=279  Identities=19%  Similarity=0.181  Sum_probs=188.0

Q ss_pred             ccccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccch-hhhcccc
Q 047959          127 ENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPE-DIWMMQK  204 (478)
Q Consensus       127 ~~~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~  204 (478)
                      -.+|.++++|+.+++..|.++.+|.......||+.|+|.+|.|.++- +++..++.|++|||+.|.|.++|. .+..-.+
T Consensus        95 ~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~n  174 (873)
T KOG4194|consen   95 FEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVN  174 (873)
T ss_pred             HHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCC
Confidence            46679999999999999999999997777778999999999988655 457888899999999999988874 3555578


Q ss_pred             CcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCC-ccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEE
Q 047959          205 LMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKL  282 (478)
Q Consensus       205 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l  282 (478)
                      +++|++++|.++..-...|..+.+|.+|.++.+. ... +..|+++++|+.|++..|.  ....-...++.+++|+.|.+
T Consensus       175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~--irive~ltFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR--IRIVEGLTFQGLPSLQNLKL  252 (873)
T ss_pred             ceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc--eeeehhhhhcCchhhhhhhh
Confidence            9999998888877666778888899999999888 444 4457779999999888874  22222234455555555555


Q ss_pred             EecCcccccCcc----------------------ccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCccc
Q 047959          283 VNEGKMRQLSRM----------------------ILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYL  340 (478)
Q Consensus       283 ~~~~~l~~~p~~----------------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  340 (478)
                      .. +.+..+.++                      ..|+.. +.+|+.|++++|.+....++....+++|++|+|+.|.++
T Consensus       253 qr-N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg-Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~  330 (873)
T KOG4194|consen  253 QR-NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG-LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT  330 (873)
T ss_pred             hh-cCcccccCcceeeecccceeecccchhhhhhcccccc-cchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence            54 444444331                      004444 555555555555554444444455555555555555544


Q ss_pred             CceeEEeCCCCCcccceeEEecCCCCCceeeC-CCcccccceeEEecCCCC---CCCccccCCCCCCCEEEEecCc
Q 047959          341 ERKLACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYL---RKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       341 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l---~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      ......  +..+..|++|.|++ +.++.+... +..+.+|++|++++|..-   ++-...+..+++|+.|++.|+.
T Consensus       331 ~l~~~s--f~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq  403 (873)
T KOG4194|consen  331 RLDEGS--FRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ  403 (873)
T ss_pred             cCChhH--HHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce
Confidence            332221  34455555555555 344443321 235788889988887643   2323355679999999999976

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.78  E-value=2e-22  Score=184.62  Aligned_cols=262  Identities=21%  Similarity=0.216  Sum_probs=190.8

Q ss_pred             eEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCC
Q 047959          135 HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSIT  214 (478)
Q Consensus       135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~  214 (478)
                      .+..|.+++|.+..+-+.+.++..|.+|++++|.+.++|++++.+..++.|+.+++++.++|+.++.+.+|++++.++|.
T Consensus        46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~  125 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE  125 (565)
T ss_pred             chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc
Confidence            35667777777776666677777777777777777777777777777777777777777777777777777777776665


Q ss_pred             CCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCc
Q 047959          215 LPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSR  293 (478)
Q Consensus       215 ~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~  293 (478)
                      . ..+|++++.+..|+.++...+. ...|..+.++.+|..+++.++   ....++...-.++.|++|+... +.++.+|.
T Consensus       126 ~-~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n---~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~  200 (565)
T KOG0472|consen  126 L-KELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN---KLKALPENHIAMKRLKHLDCNS-NLLETLPP  200 (565)
T ss_pred             e-eecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc---chhhCCHHHHHHHHHHhcccch-hhhhcCCh
Confidence            4 3566677777777777766666 777777777777777777776   3333333333477788888765 77778887


Q ss_pred             cccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeCC
Q 047959          294 MILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGA  373 (478)
Q Consensus       294 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~  373 (478)
                         .++. +.+|.-|++..|++.  ..+.++++..|++|++..|.+....-..  ...++++..|++.+ +.++++|.+.
T Consensus       201 ---~lg~-l~~L~~LyL~~Nki~--~lPef~gcs~L~Elh~g~N~i~~lpae~--~~~L~~l~vLDLRd-Nklke~Pde~  271 (565)
T KOG0472|consen  201 ---ELGG-LESLELLYLRRNKIR--FLPEFPGCSLLKELHVGENQIEMLPAEH--LKHLNSLLVLDLRD-NKLKEVPDEI  271 (565)
T ss_pred             ---hhcc-hhhhHHHHhhhcccc--cCCCCCccHHHHHHHhcccHHHhhHHHH--hcccccceeeeccc-cccccCchHH
Confidence               7777 788888888888763  3447777888888888766664432221  45678888888887 5788888877


Q ss_pred             CcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          374 GAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       374 ~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      .-+.+|+.|++++|. +..+|..++++ .|+.|.+.|+|
T Consensus       272 clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  272 CLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             HHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence            778888888888764 56777778878 88888888887

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.76  E-value=6.6e-21  Score=191.41  Aligned_cols=169  Identities=24%  Similarity=0.246  Sum_probs=101.2

Q ss_pred             CCCccccCCCCCCcEEEEEecCC--------------------cchhhHHHhccCCCCCCEEEEEecCcccccCcccc--
Q 047959          239 SCTPDILGRLPNVQTLRISGDLS--------------------YYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMIL--  296 (478)
Q Consensus       239 ~~~~~~l~~l~~L~~L~l~~~~~--------------------~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~--  296 (478)
                      ...|.-++.+.+|+.++...+.-                    ...+.++......++|++|++.. +.+..+|+.+.  
T Consensus       254 ~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v  332 (1081)
T KOG0618|consen  254 SNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAV  332 (1081)
T ss_pred             hcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh-ccccccchHHHhh
Confidence            34444566777888888887730                    01223334445567888888886 55555543100  


Q ss_pred             --------------------ccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccc
Q 047959          297 --------------------SEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLK  356 (478)
Q Consensus       297 --------------------~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~  356 (478)
                                          .-....+.|+.|.+.+|.+++...+.+.++++|+.|+|++|.+....-..  +.+++.|+
T Consensus       333 ~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~--~~kle~Le  410 (1081)
T KOG0618|consen  333 LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASK--LRKLEELE  410 (1081)
T ss_pred             hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHH--HhchHHhH
Confidence                                00011445666777777777777777888888888888877654322222  56777788


Q ss_pred             eeEEecCCCCCceeeCC----------------------CcccccceeEEecCCCCC-CCccccCCCCCCCEEEEecCc
Q 047959          357 ILHLKSMLWLEEWTMGA----------------------GAMPKLESLILNPCAYLR-KLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       357 ~L~L~~~~~l~~l~~~~----------------------~~~~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      +|+|++ +.++.+|...                      ..++.|+.++++.|..-. .+|..... ++||+|+++|+.
T Consensus       411 eL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  411 ELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             HHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            888887 4666555433                      345666777776554322 23333322 677888887776

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.75  E-value=1.6e-21  Score=178.83  Aligned_cols=244  Identities=22%  Similarity=0.240  Sum_probs=212.2

Q ss_pred             CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEe
Q 047959          131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNF  210 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l  210 (478)
                      ..+..|.+|++.+|.+..+|.+++.+..++.|+.++|++..+|+.++.+.+|..|+.+++.+.++|++++.+..|..++.
T Consensus        65 ~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~  144 (565)
T KOG0472|consen   65 KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDA  144 (565)
T ss_pred             hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhc
Confidence            56678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959          211 GSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR  289 (478)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~  289 (478)
                      ++|. ....|.++.++.+|..+.+.++. ...++..-+++.|++|+...+   ..+.+|..++.+.+|+.|+++. +++.
T Consensus       145 ~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N---~L~tlP~~lg~l~~L~~LyL~~-Nki~  219 (565)
T KOG0472|consen  145 TNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN---LLETLPPELGGLESLELLYLRR-NKIR  219 (565)
T ss_pred             cccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh---hhhcCChhhcchhhhHHHHhhh-cccc
Confidence            5554 45788889999999999988888 667766666999999998875   7888999999999999999998 9999


Q ss_pred             ccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCce
Q 047959          290 QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEW  369 (478)
Q Consensus       290 ~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l  369 (478)
                      .+|    .++. +..|+.|++..|++.-........++++.+|++++|++....-.   +.-+.+|++|++++ +.++.+
T Consensus       220 ~lP----ef~g-cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde---~clLrsL~rLDlSN-N~is~L  290 (565)
T KOG0472|consen  220 FLP----EFPG-CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE---ICLLRSLERLDLSN-NDISSL  290 (565)
T ss_pred             cCC----CCCc-cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH---HHHhhhhhhhcccC-CccccC
Confidence            899    5777 89999999999987554444566899999999999998654322   45678899999998 689999


Q ss_pred             eeCCCcccccceeEEecCCC
Q 047959          370 TMGAGAMPKLESLILNPCAY  389 (478)
Q Consensus       370 ~~~~~~~~~L~~L~l~~c~~  389 (478)
                      |...+++ .|+.|.+.+||.
T Consensus       291 p~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  291 PYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             Ccccccc-eeeehhhcCCch
Confidence            9999999 999999999884

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.67  E-value=3.2e-16  Score=162.21  Aligned_cols=233  Identities=20%  Similarity=0.149  Sum_probs=158.5

Q ss_pred             eEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCC
Q 047959          135 HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSIT  214 (478)
Q Consensus       135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~  214 (478)
                      +|+.|++++|.++.+|..   .++|++|++++|.++.+|..   .++|+.|++++|.+..+|..   ..+|+.|++++|.
T Consensus       223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~  293 (788)
T PRK15387        223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQ  293 (788)
T ss_pred             CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhc---hhhcCEEECcCCc
Confidence            566777777777766652   45677777777777766642   35677777777777666652   2457777776665


Q ss_pred             CCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCc
Q 047959          215 LPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSR  293 (478)
Q Consensus       215 ~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~  293 (478)
                      +. .+|.   .+++|+.|++++|. ..++..   ..+|+.|.+++|.   ...+|.   ...+|+.|++++ +.++.+|.
T Consensus       294 Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~---L~~LP~---lp~~Lq~LdLS~-N~Ls~LP~  359 (788)
T PRK15387        294 LT-SLPV---LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ---LTSLPT---LPSGLQELSVSD-NQLASLPT  359 (788)
T ss_pred             cc-cccc---cccccceeECCCCccccCCCC---cccccccccccCc---cccccc---cccccceEecCC-CccCCCCC
Confidence            43 3443   23577888877776 333332   2356677777762   222332   124788999987 88888885


Q ss_pred             cccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeCC
Q 047959          294 MILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGA  373 (478)
Q Consensus       294 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~  373 (478)
                             ..++|+.|++++|.+.. .+..   .++|+.|++++|.+....      ...++|+.|+++++ .++.+|.. 
T Consensus       360 -------lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP------~l~s~L~~LdLS~N-~LssIP~l-  420 (788)
T PRK15387        360 -------LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLP------VLPSELKELMVSGN-RLTSLPML-  420 (788)
T ss_pred             -------CCcccceehhhcccccc-Cccc---ccccceEEecCCcccCCC------CcccCCCEEEccCC-cCCCCCcc-
Confidence                   14678888888888754 2222   357899999988876422      12468999999984 67777753 


Q ss_pred             CcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          374 GAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       374 ~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                        +.+|+.|++++|. ++.+|..+.++++|+.|++++++
T Consensus       421 --~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        421 --PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             --hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence              4578899999875 66899989999999999999987

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.67  E-value=1.2e-16  Score=166.30  Aligned_cols=244  Identities=18%  Similarity=0.225  Sum_probs=177.2

Q ss_pred             CeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCC
Q 047959          134 KHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSI  213 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~  213 (478)
                      .+...|+++++.++.+|..+.  ++|+.|++++|.++.+|..+.  .+|++|++++|++..+|..+.  .+|+.|++++|
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N  251 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN  251 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence            346788888888888887664  478899999998888887664  589999999888888887654  47889999777


Q ss_pred             CCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccC
Q 047959          214 TLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLS  292 (478)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p  292 (478)
                      .+. .+|..+.  ++|+.|+++.+. ..+|..+.  ++|+.|++++|.  . ..++..+  .++|+.|++++ +.++.+|
T Consensus       252 ~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~--L-t~LP~~l--p~sL~~L~Ls~-N~Lt~LP  320 (754)
T PRK15370        252 RIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS--I-RTLPAHL--PSGITHLNVQS-NSLTALP  320 (754)
T ss_pred             ccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc--c-ccCcccc--hhhHHHHHhcC-CccccCC
Confidence            654 6666553  478888888776 55555443  578999998873  2 2233322  24688888887 7888887


Q ss_pred             ccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeC
Q 047959          293 RMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMG  372 (478)
Q Consensus       293 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~  372 (478)
                      .   .+   +++|+.|++++|.++. .+..+  .++|+.|++++|.+.... .    .-.++|+.|+|++| .+..+|..
T Consensus       321 ~---~l---~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~LP-~----~lp~~L~~LdLs~N-~Lt~LP~~  385 (754)
T PRK15370        321 E---TL---PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITVLP-E----TLPPTITTLDVSRN-ALTNLPEN  385 (754)
T ss_pred             c---cc---cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCcCC-h----hhcCCcCEEECCCC-cCCCCCHh
Confidence            5   33   4689999999998765 33333  268999999988876422 1    12468999999985 67777754


Q ss_pred             CCcccccceeEEecCCCCCCCccccC----CCCCCCEEEEecCc
Q 047959          373 AGAMPKLESLILNPCAYLRKLPEEQW----CIKSLCKLELHWPQ  412 (478)
Q Consensus       373 ~~~~~~L~~L~l~~c~~l~~lp~~l~----~l~~L~~L~l~~c~  412 (478)
                      .  .++|+.|++++|. +..+|..+.    .++++..|++.++|
T Consensus       386 l--~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        386 L--PAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             H--HHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence            3  2479999999875 556666443    45888999999987

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=8.6e-19  Score=142.94  Aligned_cols=159  Identities=19%  Similarity=0.257  Sum_probs=132.3

Q ss_pred             CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEe
Q 047959          131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNF  210 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l  210 (478)
                      -.+.+++.|.|++|+++.+|..+..+.+|+.|++.+|+++++|.+++.+++|+.|+++-|++..+|.+++.++.|+.||+
T Consensus        30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL  109 (264)
T ss_pred             cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence            35677888899999999888889999999999999999999999999999999999998888889999999999999999


Q ss_pred             eCCCCCC-CCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcc
Q 047959          211 GSITLPA-PPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKM  288 (478)
Q Consensus       211 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l  288 (478)
                      ++|.... .+|..|-.++.|..|++.++. ...|..++++++|+.|.+..+   ..-.+|..++.+..|+.|.+.+ +.+
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn---dll~lpkeig~lt~lrelhiqg-nrl  185 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN---DLLSLPKEIGDLTRLRELHIQG-NRL  185 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC---chhhCcHHHHHHHHHHHHhccc-cee
Confidence            8887755 567778788888888888888 778888888888888888775   4556677777777777777776 777


Q ss_pred             cccCc
Q 047959          289 RQLSR  293 (478)
Q Consensus       289 ~~~p~  293 (478)
                      +-+|.
T Consensus       186 ~vlpp  190 (264)
T KOG0617|consen  186 TVLPP  190 (264)
T ss_pred             eecCh
Confidence            76665

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.60  E-value=2.4e-15  Score=155.77  Aligned_cols=230  Identities=17%  Similarity=0.091  Sum_probs=175.2

Q ss_pred             ccccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCc
Q 047959          127 ENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLM  206 (478)
Q Consensus       127 ~~~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~  206 (478)
                      ..++...++|++|++++|.++.+|..   .++|+.|++++|.+..+|...   .+|+.|++++|++..+|..   .++|+
T Consensus       235 t~LP~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~  305 (788)
T PRK15387        235 TSLPALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQ  305 (788)
T ss_pred             CCCCCCCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---hhcCEEECcCCcccccccc---ccccc
Confidence            44555678999999999999988863   468999999999999888643   5789999999999999863   47899


Q ss_pred             EEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEec
Q 047959          207 HLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE  285 (478)
Q Consensus       207 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~  285 (478)
                      +|++++|.+. .+|..   ..+|+.|.+.+|. ..+|..   ..+|+.|++++|.  . ..+|.   ..++|+.|++++ 
T Consensus       306 ~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~--L-s~LP~---lp~~L~~L~Ls~-  371 (788)
T PRK15387        306 ELSVSDNQLA-SLPAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQ--L-ASLPT---LPSELYKLWAYN-  371 (788)
T ss_pred             eeECCCCccc-cCCCC---cccccccccccCcccccccc---ccccceEecCCCc--c-CCCCC---CCcccceehhhc-
Confidence            9999888665 35542   2467788888876 444431   2479999999983  2 23443   245788899987 


Q ss_pred             CcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCC
Q 047959          286 GKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLW  365 (478)
Q Consensus       286 ~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  365 (478)
                      +.+..+|.   .    +.+|+.|++++|.++.. +..   .++|+.|++++|.+... +.     .+.+|+.|++++ +.
T Consensus       372 N~L~~LP~---l----~~~L~~LdLs~N~Lt~L-P~l---~s~L~~LdLS~N~LssI-P~-----l~~~L~~L~Ls~-Nq  433 (788)
T PRK15387        372 NRLTSLPA---L----PSGLKELIVSGNRLTSL-PVL---PSELKELMVSGNRLTSL-PM-----LPSGLLSLSVYR-NQ  433 (788)
T ss_pred             cccccCcc---c----ccccceEEecCCcccCC-CCc---ccCCCEEEccCCcCCCC-Cc-----chhhhhhhhhcc-Cc
Confidence            88888886   2    46899999999998642 222   36899999999988642 21     245789999998 57


Q ss_pred             CCceeeCCCcccccceeEEecCCCCCCCcccc
Q 047959          366 LEEWTMGAGAMPKLESLILNPCAYLRKLPEEQ  397 (478)
Q Consensus       366 l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l  397 (478)
                      ++.+|..+..+++|+.|++++|+.-...|..+
T Consensus       434 Lt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        434 LTRLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             ccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            88999888899999999999998766555433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.59  E-value=1.8e-15  Score=157.56  Aligned_cols=224  Identities=21%  Similarity=0.272  Sum_probs=172.8

Q ss_pred             CeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCC
Q 047959          134 KHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSI  213 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~  213 (478)
                      +.|+.|++++|.++.+|..+.  .+|++|++++|.++.+|..+.  .+|+.|++++|.+..+|..+.  .+|+.|++++|
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N  272 (754)
T PRK15370        199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHN  272 (754)
T ss_pred             cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence            479999999999999998764  599999999999999998764  589999999999999998765  58999999877


Q ss_pred             CCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccC
Q 047959          214 TLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLS  292 (478)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p  292 (478)
                      .+. .+|..+.  ++|+.|++++|. ..++..+.  ++|+.|++++|.  . ..++..+  .++|+.|++++ +.++.+|
T Consensus       273 ~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~--L-t~LP~~l--~~sL~~L~Ls~-N~Lt~LP  341 (754)
T PRK15370        273 KIS-CLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS--L-TALPETL--PPGLKTLEAGE-NALTSLP  341 (754)
T ss_pred             ccC-ccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc--c-ccCCccc--cccceeccccC-CccccCC
Confidence            665 5776554  589999999987 55554443  478899999873  2 2334332  36899999998 7788888


Q ss_pred             ccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeC
Q 047959          293 RMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMG  372 (478)
Q Consensus       293 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~  372 (478)
                      .   .+   +++|+.|++++|.+.. .+..+  .++|+.|+|++|.+.....     .-..+|+.|++++ +.+..+|..
T Consensus       342 ~---~l---~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~LP~-----~l~~sL~~LdLs~-N~L~~LP~s  406 (754)
T PRK15370        342 A---SL---PPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTNLPE-----NLPAALQIMQASR-NNLVRLPES  406 (754)
T ss_pred             h---hh---cCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCCCCH-----hHHHHHHHHhhcc-CCcccCchh
Confidence            6   44   4799999999998764 33333  3689999999998874321     1234799999998 467777654


Q ss_pred             C----CcccccceeEEecCCC
Q 047959          373 A----GAMPKLESLILNPCAY  389 (478)
Q Consensus       373 ~----~~~~~L~~L~l~~c~~  389 (478)
                      .    ..+|.+..|++.+|+.
T Consensus       407 l~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        407 LPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             HHHHhhcCCCccEEEeeCCCc
Confidence            3    3458899999999985

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.58  E-value=1.3e-17  Score=168.11  Aligned_cols=245  Identities=22%  Similarity=0.255  Sum_probs=145.7

Q ss_pred             CCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeC
Q 047959          133 FKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGS  212 (478)
Q Consensus       133 ~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~  212 (478)
                      -.+|++++++.+.++.+|+.++.+.+|+.++..+|.+.++|..+....+|+.|++..|.++.+|+....++.|++|++..
T Consensus       240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~  319 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS  319 (1081)
T ss_pred             cccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence            34566777777777777766777777777777777777777666666777777777777777776666677777777755


Q ss_pred             CCCCCCCCCC-CCCCC-CCcEeCcccCC-CCCcc-ccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcc
Q 047959          213 ITLPAPPKNN-SSPLK-NLIFISALHPS-SCTPD-ILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKM  288 (478)
Q Consensus       213 ~~~~~~~~~~-~~~l~-~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l  288 (478)
                      |.+. .+|+. +..+. +|..|+.+.+. ...+. .=..+..|+.|.+.+|  ...+.....+.++++|+.|++++ +.+
T Consensus       320 N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN--~Ltd~c~p~l~~~~hLKVLhLsy-NrL  395 (1081)
T KOG0618|consen  320 NNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN--HLTDSCFPVLVNFKHLKVLHLSY-NRL  395 (1081)
T ss_pred             cccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC--cccccchhhhccccceeeeeecc-ccc
Confidence            5433 23321 11111 13333333222 11110 0112344566666666  45555556666777777777776 777


Q ss_pred             cccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCc
Q 047959          289 RQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEE  368 (478)
Q Consensus       289 ~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~  368 (478)
                      ..+|..  .+.+ ++.|+.|++++|.++. .+..+..++.|++|...+|.+.... .   +..++.|+.++++. ++++.
T Consensus       396 ~~fpas--~~~k-le~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~~fP-e---~~~l~qL~~lDlS~-N~L~~  466 (1081)
T KOG0618|consen  396 NSFPAS--KLRK-LEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLLSFP-E---LAQLPQLKVLDLSC-NNLSE  466 (1081)
T ss_pred             ccCCHH--HHhc-hHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCceeech-h---hhhcCcceEEeccc-chhhh
Confidence            777763  3455 6777777777777543 4466677777777777666654322 1   45667777777765 55654


Q ss_pred             eeeCCCcc-cccceeEEecCCCC
Q 047959          369 WTMGAGAM-PKLESLILNPCAYL  390 (478)
Q Consensus       369 l~~~~~~~-~~L~~L~l~~c~~l  390 (478)
                      +......- |+|+.|++++|..+
T Consensus       467 ~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  467 VTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             hhhhhhCCCcccceeeccCCccc
Confidence            33222222 67777777777654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.58  E-value=1.7e-17  Score=135.40  Aligned_cols=159  Identities=19%  Similarity=0.261  Sum_probs=131.8

Q ss_pred             cCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCC
Q 047959          148 QYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLK  227 (478)
Q Consensus       148 ~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~  227 (478)
                      ++|. +-.+.++..|.+++|.++..|+.+..+.+|+.|++.+|.++++|..++.+++|++|+++-|.. ..+|.+|+.++
T Consensus        25 ~~~g-Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl-~~lprgfgs~p  102 (264)
T KOG0617|consen   25 ELPG-LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL-NILPRGFGSFP  102 (264)
T ss_pred             hccc-ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh-hcCccccCCCc
Confidence            4444 457788999999999999999999999999999999999999999999999999999966654 46899999999


Q ss_pred             CCcEeCcccCC---CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCC
Q 047959          228 NLIFISALHPS---SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPS  304 (478)
Q Consensus       228 ~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~  304 (478)
                      .|+.|++..++   ...|..|-.++.|+-|.++.+   ..+.+|..++++++|+.|.++. +.+-++|+   .++. +..
T Consensus       103 ~levldltynnl~e~~lpgnff~m~tlralyl~dn---dfe~lp~dvg~lt~lqil~lrd-ndll~lpk---eig~-lt~  174 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN---DFEILPPDVGKLTNLQILSLRD-NDLLSLPK---EIGD-LTR  174 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHHHHHHHHhcCC---CcccCChhhhhhcceeEEeecc-CchhhCcH---HHHH-HHH
Confidence            99999998887   667777777777877777775   5566777777888888888876 66777777   7777 777


Q ss_pred             ceEEEEEeecCC
Q 047959          305 LTQLSLSNTELV  316 (478)
Q Consensus       305 L~~L~l~~~~~~  316 (478)
                      |+.|++.+|.++
T Consensus       175 lrelhiqgnrl~  186 (264)
T KOG0617|consen  175 LRELHIQGNRLT  186 (264)
T ss_pred             HHHHhcccceee
Confidence            888888777753

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.55  E-value=1.1e-16  Score=154.04  Aligned_cols=183  Identities=22%  Similarity=0.206  Sum_probs=76.5

Q ss_pred             CCCCCCCceEeecCCCCC-----ccchhhhCCCCCcEEeCCCCcCcc-------cchhhhccccCcEEEeeCCCCCCCCC
Q 047959          153 LENLFYLKYLKLNIPSLK-----CLPSLLCTLLNLQTLEMPSSYIDH-------SPEDIWMMQKLMHLNFGSITLPAPPK  220 (478)
Q Consensus       153 ~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~l~~-------lp~~i~~l~~L~~L~l~~~~~~~~~~  220 (478)
                      +..+.+|++|+++++.++     .++..+...++|++|+++++.+..       ++..+..+++|++|++++|.+....+
T Consensus        19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   98 (319)
T cd00116          19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC   98 (319)
T ss_pred             HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence            334444555555555542     234444444555555555553332       12334445555555554443332222


Q ss_pred             CCCCCCC---CCcEeCcccCC-C-----CCccccCCC-CCCcEEEEEecCC--cchhhHHHhccCCCCCCEEEEEecCcc
Q 047959          221 NNSSPLK---NLIFISALHPS-S-----CTPDILGRL-PNVQTLRISGDLS--YYHSGVSKSLCQLHKLECLKLVNEGKM  288 (478)
Q Consensus       221 ~~~~~l~---~L~~L~l~~~~-~-----~~~~~l~~l-~~L~~L~l~~~~~--~~~~~l~~~l~~~~~L~~L~l~~~~~l  288 (478)
                      ..+..+.   +|+.|++.+|. .     .....+..+ ++|+.|++++|.-  .....+...+..+++|++|++++ +.+
T Consensus        99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~-n~l  177 (319)
T cd00116          99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN-NGI  177 (319)
T ss_pred             HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC-CCC
Confidence            2221111   24444433332 1     111223333 5555555555530  01122333444445555555554 333


Q ss_pred             c-----ccCccccccccCCCCceEEEEEeecCCCCCc----CcccCCCCCCeEEEeeCccc
Q 047959          289 R-----QLSRMILSEYKFPPSLTQLSLSNTELVEDPM----PTLEELPHLEVLKLKQNSYL  340 (478)
Q Consensus       289 ~-----~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~L~~~~~~  340 (478)
                      +     .++.   .+.. .++|++|++++|.+.+...    ..+..+++|++|++++|.+.
T Consensus       178 ~~~~~~~l~~---~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         178 GDAGIRALAE---GLKA-NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             chHHHHHHHH---HHHh-CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            2     1222   2223 3455555555555432211    12334455555555555443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.46  E-value=1.7e-15  Score=145.74  Aligned_cols=231  Identities=19%  Similarity=0.142  Sum_probs=160.4

Q ss_pred             CccccCCCCeEeEEEecCCCCC-----cCCccCCCCCCCceEeecCCCCCc-------cchhhhCCCCCcEEeCCCCcCc
Q 047959          126 CENFCKKFKHLRVLNLGSAVLD-----QYPPGLENLFYLKYLKLNIPSLKC-------LPSLLCTLLNLQTLEMPSSYID  193 (478)
Q Consensus       126 ~~~~~~~~~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~i~~-------lp~~~~~l~~L~~L~l~~~~l~  193 (478)
                      |..++..+..|++|+++++.++     .++..+...+.|++|+++++.+..       ++..+..+++|+.|++++|.+.
T Consensus        15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~   94 (319)
T cd00116          15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG   94 (319)
T ss_pred             hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence            4556677788999999999984     466667788889999999887652       3455777889999999999765


Q ss_pred             -ccchhhhcccc---CcEEEeeCCCCCC----CCCCCCCCC-CCCcEeCcccCC-C-----CCccccCCCCCCcEEEEEe
Q 047959          194 -HSPEDIWMMQK---LMHLNFGSITLPA----PPKNNSSPL-KNLIFISALHPS-S-----CTPDILGRLPNVQTLRISG  258 (478)
Q Consensus       194 -~lp~~i~~l~~---L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~-~-----~~~~~l~~l~~L~~L~l~~  258 (478)
                       ..+..+..+.+   |++|++++|....    .+...+..+ ++|+.|++.+|. .     .....+..+++|++|++++
T Consensus        95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~  174 (319)
T cd00116          95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN  174 (319)
T ss_pred             hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence             45555666665   9999998886652    222334556 899999999997 2     2344577788999999999


Q ss_pred             cC--CcchhhHHHhccCCCCCCEEEEEecCccc-----ccCccccccccCCCCceEEEEEeecCCCCCcCccc-----CC
Q 047959          259 DL--SYYHSGVSKSLCQLHKLECLKLVNEGKMR-----QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLE-----EL  326 (478)
Q Consensus       259 ~~--~~~~~~l~~~l~~~~~L~~L~l~~~~~l~-----~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~l  326 (478)
                      +.  ......++..+...++|+.|++++ +.++     .++.   .+.. +++|++|++++|.+.+.....+.     ..
T Consensus       175 n~l~~~~~~~l~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~---~~~~-~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~  249 (319)
T cd00116         175 NGIGDAGIRALAEGLKANCNLEVLDLNN-NGLTDEGASALAE---TLAS-LKSLEVLNLGDNNLTDAGAAALASALLSPN  249 (319)
T ss_pred             CCCchHHHHHHHHHHHhCCCCCEEeccC-CccChHHHHHHHH---Hhcc-cCCCCEEecCCCcCchHHHHHHHHHHhccC
Confidence            84  111234555666778999999998 4443     3444   5566 89999999999987653222222     23


Q ss_pred             CCCCeEEEeeCcccCceeE---EeCCCCCcccceeEEec
Q 047959          327 PHLEVLKLKQNSYLERKLA---CVGCSSFPQLKILHLKS  362 (478)
Q Consensus       327 ~~L~~L~L~~~~~~~~~~~---~~~~~~~~~L~~L~L~~  362 (478)
                      +.|+.|++++|.+++....   .. ...+++|+.+++++
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~  287 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRG  287 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCC
Confidence            6788888887776532210   00 23345666666665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.42  E-value=2.6e-15  Score=138.08  Aligned_cols=131  Identities=17%  Similarity=0.251  Sum_probs=88.7

Q ss_pred             ccCCCC-eEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCc-cchhhhCCCCCcEEeCCC-CcCcccchh-hhccc
Q 047959          129 FCKKFK-HLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKC-LPSLLCTLLNLQTLEMPS-SYIDHSPED-IWMMQ  203 (478)
Q Consensus       129 ~~~~~~-~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~-~~l~~lp~~-i~~l~  203 (478)
                      ++.+++ .-..+.|..|.|+.+|+. |+.+++||.|+|++|.|+. -|..+.++..|..|-+.+ |+|+++|.+ +++|.
T Consensus        61 VP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~  140 (498)
T KOG4237|consen   61 VPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS  140 (498)
T ss_pred             CcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence            344433 356677888888877766 7788888888888888884 456677788777777777 588888754 56777


Q ss_pred             cCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCcc-ccCCCCCCcEEEEEec
Q 047959          204 KLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPD-ILGRLPNVQTLRISGD  259 (478)
Q Consensus       204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~  259 (478)
                      .|+.|.+.-|...-.....+..+++|..|.+.++. ..+.. .+..+..++.+.+..+
T Consensus       141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN  198 (498)
T ss_pred             HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence            78877775444443444556677777777777776 44443 5666677776666655

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.39  E-value=1.6e-13  Score=145.26  Aligned_cols=229  Identities=23%  Similarity=0.220  Sum_probs=149.2

Q ss_pred             CCCCeEeEEEecCCC--CCcCCcc-CCCCCCCceEeecCCC-CCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCc
Q 047959          131 KKFKHLRVLNLGSAV--LDQYPPG-LENLFYLKYLKLNIPS-LKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLM  206 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~--l~~lp~~-~~~l~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~  206 (478)
                      ...+.|++|-+.++.  +..++.. |..++.|++|++++|. +..+|+++++|-+|++|+++++.+..+|.++++|.+|.
T Consensus       542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLI  621 (889)
T ss_pred             CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence            556689999999996  5666555 7789999999999864 66999999999999999999999999999999999999


Q ss_pred             EEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC----CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCE---
Q 047959          207 HLNFGSITLPAPPKNNSSPLKNLIFISALHPS----SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLEC---  279 (478)
Q Consensus       207 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~---  279 (478)
                      +|++.++.....+|.....+.+|++|.+....    .....++..+.+|+.+.+....   . .+...+..+..|.+   
T Consensus       622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s---~-~~~e~l~~~~~L~~~~~  697 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS---V-LLLEDLLGMTRLRSLLQ  697 (889)
T ss_pred             eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch---h-HhHhhhhhhHHHHHHhH
Confidence            99997665555556566679999999998775    4445566777788877776552   1 22222333444332   


Q ss_pred             -EEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccC------CCCCCeEEEeeCcccCceeEEeCCCCC
Q 047959          280 -LKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEE------LPHLEVLKLKQNSYLERKLACVGCSSF  352 (478)
Q Consensus       280 -L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------l~~L~~L~L~~~~~~~~~~~~~~~~~~  352 (478)
                       +.+.+ ......+.   .++. +.+|+.|.+.+|............      ++++..+.+.++... ..+..  ....
T Consensus       698 ~l~~~~-~~~~~~~~---~~~~-l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~--~~f~  769 (889)
T KOG4658|consen  698 SLSIEG-CSKRTLIS---SLGS-LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTW--LLFA  769 (889)
T ss_pred             hhhhcc-cccceeec---cccc-ccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccch--hhcc
Confidence             22222 22223333   5566 788888888888764322221111      223333333322211 11111  2345


Q ss_pred             cccceeEEecCCCCCceee
Q 047959          353 PQLKILHLKSMLWLEEWTM  371 (478)
Q Consensus       353 ~~L~~L~L~~~~~l~~l~~  371 (478)
                      |+|+.|.+.+|..++.+..
T Consensus       770 ~~L~~l~l~~~~~~e~~i~  788 (889)
T KOG4658|consen  770 PHLTSLSLVSCRLLEDIIP  788 (889)
T ss_pred             CcccEEEEecccccccCCC
Confidence            6677777776666554433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.29  E-value=1e-13  Score=127.68  Aligned_cols=119  Identities=18%  Similarity=0.167  Sum_probs=94.0

Q ss_pred             CCeeeecCccccCCCCeEeEEEecCCCCCc-CCccCCCCCCCceEeecC-CCCCccchh-hhCCCCCcEEeCCCCcCccc
Q 047959          119 DHLALIHCENFCKKFKHLRVLNLGSAVLDQ-YPPGLENLFYLKYLKLNI-PSLKCLPSL-LCTLLNLQTLEMPSSYIDHS  195 (478)
Q Consensus       119 ~~lr~l~~~~~~~~~~~L~~L~L~~~~l~~-lp~~~~~l~~L~~L~l~~-~~i~~lp~~-~~~l~~L~~L~l~~~~l~~l  195 (478)
                      .+++++ ++..|+.+++||.|||++|.|+. -|+.|.++.+|..|-+.+ |+|+.+|+. +++|..|+.|.+.-|++..+
T Consensus        77 N~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci  155 (498)
T KOG4237|consen   77 NQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI  155 (498)
T ss_pred             CCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence            334443 57788999999999999999994 466699999998887776 899999964 78999999999999988887


Q ss_pred             c-hhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC
Q 047959          196 P-EDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS  238 (478)
Q Consensus       196 p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  238 (478)
                      + +.+..+++|..|.+..|.+.......+..+.+++++.+..+.
T Consensus       156 r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  156 RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            6 457889999999996665443333357778888888776553

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.21  E-value=3.6e-13  Score=125.11  Aligned_cols=300  Identities=18%  Similarity=0.125  Sum_probs=194.9

Q ss_pred             eEeEEEecCCC-CC--cCCccCCCCCCCceEeecCCC-CC--ccchhhhCCCCCcEEeCCCC-cCcccc--hhhhccccC
Q 047959          135 HLRVLNLGSAV-LD--QYPPGLENLFYLKYLKLNIPS-LK--CLPSLLCTLLNLQTLEMPSS-YIDHSP--EDIWMMQKL  205 (478)
Q Consensus       135 ~L~~L~L~~~~-l~--~lp~~~~~l~~L~~L~l~~~~-i~--~lp~~~~~l~~L~~L~l~~~-~l~~lp--~~i~~l~~L  205 (478)
                      .|+.|.++|+. +.  .+-.....+++++.|++.+|. ++  .+-.--..+++|+.|++..| .+....  .....+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            56777777776 22  333334567777777777764 33  22222346778888888777 554432  123467888


Q ss_pred             cEEEeeCCCCCC--CCCCCCCCCCCCcEeCcccCCCC----CccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCE
Q 047959          206 MHLNFGSITLPA--PPKNNSSPLKNLIFISALHPSSC----TPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLEC  279 (478)
Q Consensus       206 ~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~  279 (478)
                      ++|+++.+....  .+......++.++.+...+|.+.    +...-+.+..+.++++..|.....+.+...-..+..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            888886654322  12223445556666666666511    111223444455555555543333444444456778888


Q ss_pred             EEEEecCcccccCccccccccCCCCceEEEEEeec-CCCCCcCccc-CCCCCCeEEEeeCcccCce-eEEeCCCCCcccc
Q 047959          280 LKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTE-LVEDPMPTLE-ELPHLEVLKLKQNSYLERK-LACVGCSSFPQLK  356 (478)
Q Consensus       280 L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~-~l~~L~~L~L~~~~~~~~~-~~~~~~~~~~~L~  356 (478)
                      |..++|..++..+-  ..++.-.++|+.|.+.+|+ ++...+..++ +++.|+.+++.++....+. +... ..+++.|+
T Consensus       299 l~~s~~t~~~d~~l--~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl-s~~C~~lr  375 (483)
T KOG4341|consen  299 LCYSSCTDITDEVL--WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL-SRNCPRLR  375 (483)
T ss_pred             hcccCCCCCchHHH--HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh-ccCCchhc
Confidence            88888777664442  1233337999999999995 5555555554 6789999999877654333 2222 56799999


Q ss_pred             eeEEecCCCCCce-----eeCCCcccccceeEEecCCCCCC-CccccCCCCCCCEEEEecCcHHHHHHHHhccCCcccce
Q 047959          357 ILHLKSMLWLEEW-----TMGAGAMPKLESLILNPCAYLRK-LPEEQWCIKSLCKLELHWPQPELRQLLRAFEDMEWRKS  430 (478)
Q Consensus       357 ~L~L~~~~~l~~l-----~~~~~~~~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~i  430 (478)
                      +|.+++|..++.-     .....++..|+.+.+.+|+.+++ .-+.+..+++||.+++.+|...+.+.+++       ..
T Consensus       376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~-------~~  448 (483)
T KOG4341|consen  376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR-------FA  448 (483)
T ss_pred             cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH-------HH
Confidence            9999999877643     33345788899999999998764 34567789999999999999888888887       46


Q ss_pred             eeeeeeEEeeeehh
Q 047959          431 QMVEASYIAAIWLS  444 (478)
Q Consensus       431 ~~lp~~~~~~~~~~  444 (478)
                      +|+|.+++++....
T Consensus       449 ~~lp~i~v~a~~a~  462 (483)
T KOG4341|consen  449 THLPNIKVHAYFAP  462 (483)
T ss_pred             hhCccceehhhccC
Confidence            78999988866543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1.4e-11  Score=115.25  Aligned_cols=60  Identities=18%  Similarity=0.109  Sum_probs=25.9

Q ss_pred             CCCCCceEeecCCCCCccc--hhhhCCCCCcEEeCCCCcC---cccchhhhccccCcEEEeeCCC
Q 047959          155 NLFYLKYLKLNIPSLKCLP--SLLCTLLNLQTLEMPSSYI---DHSPEDIWMMQKLMHLNFGSIT  214 (478)
Q Consensus       155 ~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~l---~~lp~~i~~l~~L~~L~l~~~~  214 (478)
                      ++++|+...|+++.+...+  .....|++++.||++.|-+   ..+-.....+++|+.|+++.|.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr  183 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR  183 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc
Confidence            3344444444444444333  1334444555555555422   1222233345555555554443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=1.3e-10  Score=99.24  Aligned_cols=128  Identities=23%  Similarity=0.266  Sum_probs=46.2

Q ss_pred             CeEeEEEecCCCCCcCCccCC-CCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhh-ccccCcEEEee
Q 047959          134 KHLRVLNLGSAVLDQYPPGLE-NLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIW-MMQKLMHLNFG  211 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~lp~~~~-~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~l~  211 (478)
                      ..++.|+|+++.|+.+.. ++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|.|.++++.+. .+++|++|+++
T Consensus        19 ~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~   96 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS   96 (175)
T ss_dssp             -----------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred             cccccccccccccccccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence            357899999999887654 55 5789999999999999886 57788999999999999999876664 68999999997


Q ss_pred             CCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecC-CcchhhHHHhccCCCCCCEEEEEe
Q 047959          212 SITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDL-SYYHSGVSKSLCQLHKLECLKLVN  284 (478)
Q Consensus       212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~~l~~~~~L~~L~l~~  284 (478)
                      +|.+..        +..+             ..++.+++|+.|++.+|+ ......-...+..+|+|+.||-..
T Consensus        97 ~N~I~~--------l~~l-------------~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   97 NNKISD--------LNEL-------------EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             TS---S--------CCCC-------------GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CCcCCC--------hHHh-------------HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            774421        1111             224456677777777664 111122233445566666666443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.05  E-value=1.2e-11  Score=112.78  Aligned_cols=244  Identities=18%  Similarity=0.190  Sum_probs=134.9

Q ss_pred             CCCCeEeEEEecCCCCC-----cCCccCCCCCCCceEeecCC--C-CC-ccchh-------hhCCCCCcEEeCCCCcC--
Q 047959          131 KKFKHLRVLNLGSAVLD-----QYPPGLENLFYLKYLKLNIP--S-LK-CLPSL-------LCTLLNLQTLEMPSSYI--  192 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~--~-i~-~lp~~-------~~~l~~L~~L~l~~~~l--  192 (478)
                      -.+..++.++|+||.+.     .+.+.+.+.++|+.-+++.-  + .. ++|+.       +-.+++|++|+|++|-+  
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            34566788888888865     44455666777777777652  1 11 45543       23445666666666622  


Q ss_pred             ccc---chhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecC--CcchhhH
Q 047959          193 DHS---PEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDL--SYYHSGV  267 (478)
Q Consensus       193 ~~l---p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l  267 (478)
                      ..+   -+-+.++..|++|.+.+|.++..--..++.  .|+.|.       .....+.-++|+++....|.  +.....+
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~-------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~  177 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA-------VNKKAASKPKLRVFICGRNRLENGGATAL  177 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH-------HHhccCCCcceEEEEeeccccccccHHHH
Confidence            111   123345555666655322221100000000  011111       11223445677777777775  3344556


Q ss_pred             HHhccCCCCCCEEEEEecCcccc-----cCccccccccCCCCceEEEEEeecCCCCC----cCcccCCCCCCeEEEeeCc
Q 047959          268 SKSLCQLHKLECLKLVNEGKMRQ-----LSRMILSEYKFPPSLTQLSLSNTELVEDP----MPTLEELPHLEVLKLKQNS  338 (478)
Q Consensus       268 ~~~l~~~~~L~~L~l~~~~~l~~-----~p~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~L~~~~  338 (478)
                      ...++..+.|+.+.+.. +.+..     +..   .+.. +++|+.|+|.+|.++...    -..+..+++|++|++.+|.
T Consensus       178 A~~~~~~~~leevr~~q-N~I~~eG~~al~e---al~~-~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  178 AEAFQSHPTLEEVRLSQ-NGIRPEGVTALAE---ALEH-CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             HHHHHhccccceEEEec-ccccCchhHHHHH---HHHh-CCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence            66677777888888776 44431     111   3444 788888888888765432    2245567778888888777


Q ss_pred             ccCceeEEe---CCCCCcccceeEEecCCCCC-----ceeeCCCcccccceeEEecCCC
Q 047959          339 YLERKLACV---GCSSFPQLKILHLKSMLWLE-----EWTMGAGAMPKLESLILNPCAY  389 (478)
Q Consensus       339 ~~~~~~~~~---~~~~~~~L~~L~L~~~~~l~-----~l~~~~~~~~~L~~L~l~~c~~  389 (478)
                      +........   --..+|+|+.|.+.+| .++     .+.......|.|+.|.+++|..
T Consensus       253 l~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  253 LENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            654331110   0234788888888874 343     2223345588899999998875

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.04  E-value=1.5e-11  Score=111.99  Aligned_cols=245  Identities=23%  Similarity=0.247  Sum_probs=162.7

Q ss_pred             cCCCCCCCceEeecCCCCC-----ccchhhhCCCCCcEEeCCCCcC----cccchh-------hhccccCcEEEeeCCCC
Q 047959          152 GLENLFYLKYLKLNIPSLK-----CLPSLLCTLLNLQTLEMPSSYI----DHSPED-------IWMMQKLMHLNFGSITL  215 (478)
Q Consensus       152 ~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~l----~~lp~~-------i~~l~~L~~L~l~~~~~  215 (478)
                      .+..+..+++++|++|.+.     .+.+.+.+.++|+..++++-..    .++|+.       +..+++|++|++|.|.+
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            3556778999999999876     4556677788999998887632    344543       34667899999988887


Q ss_pred             CCCCCCC----CCCCCCCcEeCcccCC-CCCc-cccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959          216 PAPPKNN----SSPLKNLIFISALHPS-SCTP-DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR  289 (478)
Q Consensus       216 ~~~~~~~----~~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~  289 (478)
                      +...+..    +.++++|++|.+.+|. +... ..++.  .|..|           .......+.+.|+++.... |++.
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l-----------~~~kk~~~~~~Lrv~i~~r-Nrle  170 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFEL-----------AVNKKAASKPKLRVFICGR-NRLE  170 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHH-----------HHHhccCCCcceEEEEeec-cccc
Confidence            7655544    3456667777766664 1110 01110  00000           0223455778999999987 7776


Q ss_pred             ccCcc--ccccccCCCCceEEEEEeecCCCCCc----CcccCCCCCCeEEEeeCcccCcee---EEeCCCCCcccceeEE
Q 047959          290 QLSRM--ILSEYKFPPSLTQLSLSNTELVEDPM----PTLEELPHLEVLKLKQNSYLERKL---ACVGCSSFPQLKILHL  360 (478)
Q Consensus       290 ~~p~~--~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~L~~~~~~~~~~---~~~~~~~~~~L~~L~L  360 (478)
                      ..+..  -..+.. .+.|+.+.++.|.+.....    ..+..+++|+.|+|++|.++...-   ... +..+++|+.|++
T Consensus       171 n~ga~~~A~~~~~-~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka-L~s~~~L~El~l  248 (382)
T KOG1909|consen  171 NGGATALAEAFQS-HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA-LSSWPHLRELNL  248 (382)
T ss_pred             cccHHHHHHHHHh-ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH-hcccchheeecc
Confidence            54431  002444 7899999999998754333    356789999999999999875431   111 566889999999


Q ss_pred             ecCCCCCcee-----eCCCcccccceeEEecCCCCCC----CccccCCCCCCCEEEEecCc
Q 047959          361 KSMLWLEEWT-----MGAGAMPKLESLILNPCAYLRK----LPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       361 ~~~~~l~~l~-----~~~~~~~~L~~L~l~~c~~l~~----lp~~l~~l~~L~~L~l~~c~  412 (478)
                      .+|.--..-.     ......|+|+.|.+.+|.....    +...+...+.|+.|++++|.
T Consensus       249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            9984222111     1123589999999999976432    22345568999999999986

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.02  E-value=2.2e-10  Score=113.66  Aligned_cols=175  Identities=27%  Similarity=0.329  Sum_probs=93.4

Q ss_pred             CeEeEEEecCCCCCcCCccCCCCC-CCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeC
Q 047959          134 KHLRVLNLGSAVLDQYPPGLENLF-YLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGS  212 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~lp~~~~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~  212 (478)
                      +.++.|++.++.++.++.....+. +|+.|++++|.+..+|..++.+++|+.|++++|.+..+|...+.+++|+.|++  
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l--  193 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL--  193 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec--
Confidence            445555555555555555444442 55555555555555544455555555555555555555544444555555555  


Q ss_pred             CCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc
Q 047959          213 ITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL  291 (478)
Q Consensus       213 ~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~  291 (478)
                                            .++. ..++.......+|+++.++++   .....+..+.++.++..+.+.+ +.+..+
T Consensus       194 ----------------------s~N~i~~l~~~~~~~~~L~~l~~~~N---~~~~~~~~~~~~~~l~~l~l~~-n~~~~~  247 (394)
T COG4886         194 ----------------------SGNKISDLPPEIELLSALEELDLSNN---SIIELLSSLSNLKNLSGLELSN-NKLEDL  247 (394)
T ss_pred             ----------------------cCCccccCchhhhhhhhhhhhhhcCC---cceecchhhhhcccccccccCC-ceeeec
Confidence                                  4444 333333333344555555544   1223333444555555555444 555555


Q ss_pred             CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCc
Q 047959          292 SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLER  342 (478)
Q Consensus       292 p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~  342 (478)
                      +.   .++. +++++.|++++|.++....  ++.+.+++.|+++++.+...
T Consensus       248 ~~---~~~~-l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         248 PE---SIGN-LSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             cc---hhcc-ccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence            55   6666 7777777777777644322  67777777777777666543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.97  E-value=1.2e-11  Score=119.32  Aligned_cols=174  Identities=24%  Similarity=0.289  Sum_probs=96.5

Q ss_pred             CCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEee
Q 047959          132 KFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFG  211 (478)
Q Consensus       132 ~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~  211 (478)
                      .|..|..+.|+.|.+..+|..++++..|.+|+++.|++..+|..++.|+ |+.|-+++|+++.+|+.++.+++|.+|+.+
T Consensus        96 ~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s  174 (722)
T KOG0532|consen   96 AFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVS  174 (722)
T ss_pred             HHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhh
Confidence            3444555555566665666666666666666666666666666655554 666666666666666666655666666664


Q ss_pred             CCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc
Q 047959          212 SITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ  290 (478)
Q Consensus       212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~  290 (478)
                      .|.+ ..+|..++.+.+|+.|++..+. ...|+++..|+ |.+||+++|   ....+|..+.+|.+|++|.|.+ |-+..
T Consensus       175 ~nei-~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScN---kis~iPv~fr~m~~Lq~l~Len-NPLqS  248 (722)
T KOG0532|consen  175 KNEI-QSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCN---KISYLPVDFRKMRHLQVLQLEN-NPLQS  248 (722)
T ss_pred             hhhh-hhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccC---ceeecchhhhhhhhheeeeecc-CCCCC
Confidence            4432 3455555666666666655555 55555555333 556666654   4445555666666666666654 55554


Q ss_pred             cCccccccccCCCCceEEEEEee
Q 047959          291 LSRMILSEYKFPPSLTQLSLSNT  313 (478)
Q Consensus       291 ~p~~~~~~~~~~~~L~~L~l~~~  313 (478)
                      -|..+...+. ..-.++|+..-|
T Consensus       249 PPAqIC~kGk-VHIFKyL~~qA~  270 (722)
T KOG0532|consen  249 PPAQICEKGK-VHIFKYLSTQAC  270 (722)
T ss_pred             ChHHHHhccc-eeeeeeecchhc
Confidence            4431111222 333455555555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.97  E-value=4.8e-10  Score=111.19  Aligned_cols=129  Identities=29%  Similarity=0.416  Sum_probs=101.4

Q ss_pred             cCCCC-eEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEE
Q 047959          130 CKKFK-HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHL  208 (478)
Q Consensus       130 ~~~~~-~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L  208 (478)
                      ...++ +|+.|++++|.+..+|..+..+++|+.|++++|.+.++|...+.+.+|+.|+++++.+..+|..+.....|+.|
T Consensus       135 ~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l  214 (394)
T COG4886         135 IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEEL  214 (394)
T ss_pred             cccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhh
Confidence            35553 89999999999999988899999999999999999999988878999999999999999999987778889999


Q ss_pred             EeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEec
Q 047959          209 NFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGD  259 (478)
Q Consensus       209 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~  259 (478)
                      .+++|. ....+..+.+++++..+.+..+. ...+..++.+++++.|+++++
T Consensus       215 ~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n  265 (394)
T COG4886         215 DLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN  265 (394)
T ss_pred             hhcCCc-ceecchhhhhcccccccccCCceeeeccchhccccccceeccccc
Confidence            996664 33455566677777777655444 333445555555555555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=7.7e-11  Score=110.43  Aligned_cols=238  Identities=17%  Similarity=0.160  Sum_probs=163.8

Q ss_pred             CCccchhhhCCCCCcEEeCCCCcCcccc--hhhhccccCcEEEeeCCCCCC--CCCCCCCCCCCCcEeCcccCC-C--CC
Q 047959          169 LKCLPSLLCTLLNLQTLEMPSSYIDHSP--EDIWMMQKLMHLNFGSITLPA--PPKNNSSPLKNLIFISALHPS-S--CT  241 (478)
Q Consensus       169 i~~lp~~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~-~--~~  241 (478)
                      +..+-.-=.++++|+...+.++.+...+  .....|++++.||++.|-+..  .+-.....+++|+.|+++.+. .  ..
T Consensus       110 fDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~  189 (505)
T KOG3207|consen  110 FDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS  189 (505)
T ss_pred             HHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc
Confidence            3344444567889999999999887777  367789999999998774432  122234668999999999998 1  11


Q ss_pred             ccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCC-CCc
Q 047959          242 PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVE-DPM  320 (478)
Q Consensus       242 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~-~~~  320 (478)
                      ...-..+++|+.|.++.|. .....+...+..+|+|+.|.+..++.+.....   ...- +..|+.|+|++|++.. ...
T Consensus       190 s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~---~~~i-~~~L~~LdLs~N~li~~~~~  264 (505)
T KOG3207|consen  190 SNTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKAT---STKI-LQTLQELDLSNNNLIDFDQG  264 (505)
T ss_pred             ccchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecc---hhhh-hhHHhhccccCCcccccccc
Confidence            1122367899999999996 44666777788999999999998433321111   2233 7789999999998644 334


Q ss_pred             CcccCCCCCCeEEEeeCcccCceeEEeC----CCCCcccceeEEecCCCCCceeeC--CCcccccceeEEecCCCCCCCc
Q 047959          321 PTLEELPHLEVLKLKQNSYLERKLACVG----CSSFPQLKILHLKSMLWLEEWTMG--AGAMPKLESLILNPCAYLRKLP  394 (478)
Q Consensus       321 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~----~~~~~~L~~L~L~~~~~l~~l~~~--~~~~~~L~~L~l~~c~~l~~lp  394 (478)
                      ...+.+|.|..|+++.+.+........+    ...|++|+.|++.. +.+..|+..  ...+++|+.|.+-.++.-+.-.
T Consensus       265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~  343 (505)
T KOG3207|consen  265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLNYLNKETD  343 (505)
T ss_pred             cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccccccccccc
Confidence            5778999999999998876543221100    35799999999998 466666542  3567888888877766433211


Q ss_pred             ----cccCCCCCCCEEEEecCc
Q 047959          395 ----EEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       395 ----~~l~~l~~L~~L~l~~c~  412 (478)
                          ..+...++|..|+=..|.
T Consensus       344 ~a~~~VIAr~~~l~~LN~~di~  365 (505)
T KOG3207|consen  344 TAKLLVIARISQLVKLNDVDIS  365 (505)
T ss_pred             ceeEEeeeehhhhhhhcccccC
Confidence                134556666666555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.96  E-value=2.5e-11  Score=117.14  Aligned_cols=195  Identities=18%  Similarity=0.255  Sum_probs=165.0

Q ss_pred             CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEe
Q 047959          131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNF  210 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l  210 (478)
                      -.+..-...|++.|.+..+|..++.+..|..+.+..|.+..+|..++++..|.+|||+.|.+..+|..+..|+ |+.|.+
T Consensus        72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence            4566677899999999999999999999999999999999999999999999999999999999999888774 899999


Q ss_pred             eCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959          211 GSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR  289 (478)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~  289 (478)
                      ++| ....+|..++.+..|..|+.+.|. ...+..++++.+|+.|.+..+   ....+|..+. .-.|..|+++. |++.
T Consensus       151 sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn---~l~~lp~El~-~LpLi~lDfSc-Nkis  224 (722)
T KOG0532|consen  151 SNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN---HLEDLPEELC-SLPLIRLDFSC-NKIS  224 (722)
T ss_pred             ecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh---hhhhCCHHHh-CCceeeeeccc-Ccee
Confidence            555 456789899988999999999888 889999999999999999987   5666777776 44688999995 9999


Q ss_pred             ccCccccccccCCCCceEEEEEeecCCCCCcCcc---cCCCCCCeEEEeeC
Q 047959          290 QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTL---EELPHLEVLKLKQN  337 (478)
Q Consensus       290 ~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~L~~~  337 (478)
                      .+|.   .+.+ +..|+.|-|.+|.+.. .+..+   +...--++|+...|
T Consensus       225 ~iPv---~fr~-m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  225 YLPV---DFRK-MRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ecch---hhhh-hhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence            9999   8999 9999999999999743 33222   33445566666655

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.84  E-value=6.8e-10  Score=99.29  Aligned_cols=218  Identities=23%  Similarity=0.176  Sum_probs=138.5

Q ss_pred             CCCCceEeecCCC-------CC--ccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCC
Q 047959          156 LFYLKYLKLNIPS-------LK--CLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPL  226 (478)
Q Consensus       156 l~~L~~L~l~~~~-------i~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l  226 (478)
                      +.+|.+|.+++..       |.  .+|-.+.-+++|..+.++.|.-+.+-.-...-+.|+.+.+ ++......| .+--.
T Consensus       181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v-~~s~~~~~~-~l~pe  258 (490)
T KOG1259|consen  181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICV-HNTTIQDVP-SLLPE  258 (490)
T ss_pred             hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeee-ecccccccc-cccch
Confidence            4456666665431       22  4555666678888888888855544333334567888888 333222222 12222


Q ss_pred             CCCcEeCcccCC---CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCC
Q 047959          227 KNLIFISALHPS---SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPP  303 (478)
Q Consensus       227 ~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~  303 (478)
                      +.+.......-.   +........++.|+++++++|   ....+..++.-.|.++.|+++. +.+..+.    .+.. ++
T Consensus       259 ~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~-N~i~~v~----nLa~-L~  329 (490)
T KOG1259|consen  259 TILADPSGSEPSTSNGSALVSADTWQELTELDLSGN---LITQIDESVKLAPKLRRLILSQ-NRIRTVQ----NLAE-LP  329 (490)
T ss_pred             hhhcCccCCCCCccCCceEEecchHhhhhhcccccc---chhhhhhhhhhccceeEEeccc-cceeeeh----hhhh-cc
Confidence            333322222221   334445566778888999987   5566677777888899999987 7777665    3555 88


Q ss_pred             CceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCcee--eCCCcccccce
Q 047959          304 SLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWT--MGAGAMPKLES  381 (478)
Q Consensus       304 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~--~~~~~~~~L~~  381 (478)
                      +|+.|++++|.++. ...+-..+.+.+.|.|++|.+.+..    |+..+-+|+.|++++ ++++.+.  ..++++|.|+.
T Consensus       330 ~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~LS----GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~  403 (490)
T KOG1259|consen  330 QLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETLS----GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLET  403 (490)
T ss_pred             cceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhhh----hhHhhhhheeccccc-cchhhHHHhcccccccHHHH
Confidence            89999999887643 2223345678888888888764422    256677888888887 4565432  45688899999


Q ss_pred             eEEecCCCC
Q 047959          382 LILNPCAYL  390 (478)
Q Consensus       382 L~l~~c~~l  390 (478)
                      +.+.+||.-
T Consensus       404 l~L~~NPl~  412 (490)
T KOG1259|consen  404 LRLTGNPLA  412 (490)
T ss_pred             HhhcCCCcc
Confidence            999888853

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=1.6e-11  Score=109.39  Aligned_cols=188  Identities=19%  Similarity=0.186  Sum_probs=129.3

Q ss_pred             CCCcEeCcccCC---CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCC
Q 047959          227 KNLIFISALHPS---SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPP  303 (478)
Q Consensus       227 ~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~  303 (478)
                      +.||.|+++...   ......++.|.+|+.|.+.+.  ...+.+...+.+-.+|+.|+++.|+.++...- ...+.. ++
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~--~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~-~ll~~s-cs  260 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL--RLDDPIVNTIAKNSNLVRLNLSMCSGFTENAL-QLLLSS-CS  260 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc--ccCcHHHHHHhccccceeeccccccccchhHH-HHHHHh-hh
Confidence            358888877765   344455678888888888888  67778888888888999999988888774321 003455 88


Q ss_pred             CceEEEEEeecCCCCCcCc-cc-CCCCCCeEEEeeCccc--CceeEEeCCCCCcccceeEEecCCCCC-ceeeCCCcccc
Q 047959          304 SLTQLSLSNTELVEDPMPT-LE-ELPHLEVLKLKQNSYL--ERKLACVGCSSFPQLKILHLKSMLWLE-EWTMGAGAMPK  378 (478)
Q Consensus       304 ~L~~L~l~~~~~~~~~~~~-l~-~l~~L~~L~L~~~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~l~-~l~~~~~~~~~  378 (478)
                      .|..|+|++|.+..+.... +. --++|..|+|+|+.-.  ....... ...+|+|.+|+|++|..++ .....+..++.
T Consensus       261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL-~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~  339 (419)
T KOG2120|consen  261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY  339 (419)
T ss_pred             hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH-HHhCCceeeeccccccccCchHHHHHHhcch
Confidence            8889999999765543322 12 2367888888875421  1111111 4568999999999988777 33344567899


Q ss_pred             cceeEEecCCCCCCCcc---ccCCCCCCCEEEEecCcHH-HHHHHHh
Q 047959          379 LESLILNPCAYLRKLPE---EQWCIKSLCKLELHWPQPE-LRQLLRA  421 (478)
Q Consensus       379 L~~L~l~~c~~l~~lp~---~l~~l~~L~~L~l~~c~~~-~~~~~~~  421 (478)
                      |+.|.++.|..+  +|+   .+...|+|.+|++.||-.. .++-+..
T Consensus       340 L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e  384 (419)
T KOG2120|consen  340 LQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSDTTMELLKE  384 (419)
T ss_pred             heeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCchHHHHHHH
Confidence            999999999865  333   4567899999999997533 4444433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.80  E-value=7.2e-10  Score=99.12  Aligned_cols=225  Identities=18%  Similarity=0.167  Sum_probs=152.1

Q ss_pred             CCCCeEeEEEecCCC--CC-------cCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhc
Q 047959          131 KKFKHLRVLNLGSAV--LD-------QYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWM  201 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~--l~-------~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~  201 (478)
                      .-+..|.+|-+++..  +.       .+|-.+.-+++|+.+.++.|.-+.+..-...-+.|+++.+.++-+...|. +--
T Consensus       179 df~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~-l~p  257 (490)
T KOG1259|consen  179 DFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS-LLP  257 (490)
T ss_pred             HhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccc-ccc
Confidence            445567777777654  21       44545667789999999998755444333334689999988875544432 111


Q ss_pred             cccCcEEEeeCC-CCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCE
Q 047959          202 MQKLMHLNFGSI-TLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLEC  279 (478)
Q Consensus       202 l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~  279 (478)
                      ...+....-+.. ...+.....+..-..|++++++.+. ..+-+...-+|.++.|+++.|.  .. .+ ..++.+++|+.
T Consensus       258 e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~--i~-~v-~nLa~L~~L~~  333 (490)
T KOG1259|consen  258 ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR--IR-TV-QNLAELPQLQL  333 (490)
T ss_pred             hhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccc--ee-ee-hhhhhcccceE
Confidence            122222211111 1111222223344578889998887 6666677778999999999983  21 12 23778899999


Q ss_pred             EEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeE
Q 047959          280 LKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILH  359 (478)
Q Consensus       280 L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~  359 (478)
                      |++++ +.++.+-.   |-.+ +-+.+.|.+++|.+  ..+..++.+-+|..|++++|++....-... ++++|.|+.+.
T Consensus       334 LDLS~-N~Ls~~~G---wh~K-LGNIKtL~La~N~i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~-IG~LPCLE~l~  405 (490)
T KOG1259|consen  334 LDLSG-NLLAECVG---WHLK-LGNIKTLKLAQNKI--ETLSGLRKLYSLVNLDLSSNQIEELDEVNH-IGNLPCLETLR  405 (490)
T ss_pred             eeccc-chhHhhhh---hHhh-hcCEeeeehhhhhH--hhhhhhHhhhhheeccccccchhhHHHhcc-cccccHHHHHh
Confidence            99998 88888876   7777 89999999999986  346677888899999999999865443333 89999999999


Q ss_pred             EecCCCCCce
Q 047959          360 LKSMLWLEEW  369 (478)
Q Consensus       360 L~~~~~l~~l  369 (478)
                      |.+++ +..+
T Consensus       406 L~~NP-l~~~  414 (490)
T KOG1259|consen  406 LTGNP-LAGS  414 (490)
T ss_pred             hcCCC-cccc
Confidence            99854 4433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.75  E-value=1.2e-10  Score=108.55  Aligned_cols=259  Identities=18%  Similarity=0.158  Sum_probs=180.6

Q ss_pred             CCceEeecCCCC---CccchhhhCCCCCcEEeCCCC-cCccc--chhhhccccCcEEEeeCCCCCC--CCCCCCCCCCCC
Q 047959          158 YLKYLKLNIPSL---KCLPSLLCTLLNLQTLEMPSS-YIDHS--PEDIWMMQKLMHLNFGSITLPA--PPKNNSSPLKNL  229 (478)
Q Consensus       158 ~L~~L~l~~~~i---~~lp~~~~~l~~L~~L~l~~~-~l~~l--p~~i~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L  229 (478)
                      -||.|.++++.-   ..+-.....+++++.|++.+| ++..-  -..-..+.+|++|++..+....  .+......+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            689999998753   355555678999999999999 55432  2223478999999995533222  111223567899


Q ss_pred             cEeCcccCC----CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccc-cccCCCC
Q 047959          230 IFISALHPS----SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILS-EYKFPPS  304 (478)
Q Consensus       230 ~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~-~~~~~~~  304 (478)
                      ++|+++.|.    ...-....++.+++.+...+|.+...+.+...-..+.-+..+++..|+.++...-   | +...+..
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~---~~i~~~c~~  295 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL---WLIACGCHA  295 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH---HHHhhhhhH
Confidence            999999997    2333445678888888888886555666665556677788888878877774432   2 1222788


Q ss_pred             ceEEEEEeecC-CCCCcCcc-cCCCCCCeEEEeeCc-ccCceeEEeCCCCCcccceeEEecCCCCC--ceeeCCCccccc
Q 047959          305 LTQLSLSNTEL-VEDPMPTL-EELPHLEVLKLKQNS-YLERKLACVGCSSFPQLKILHLKSMLWLE--EWTMGAGAMPKL  379 (478)
Q Consensus       305 L~~L~l~~~~~-~~~~~~~l-~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~l~--~l~~~~~~~~~L  379 (478)
                      |+.|..++|.. ++.....+ .+.++|+.|.+.+|. +++..+... ..+++.|+.+++..|....  .+.....++|.|
T Consensus       296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l-~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l  374 (483)
T KOG4341|consen  296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML-GRNCPHLERLDLEECGLITDGTLASLSRNCPRL  374 (483)
T ss_pred             hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh-hcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence            99999999853 33333344 467999999999886 555444443 5678999999999986554  344444689999


Q ss_pred             ceeEEecCCCCCCC-----ccccCCCCCCCEEEEecCcHHHHHHHH
Q 047959          380 ESLILNPCAYLRKL-----PEEQWCIKSLCKLELHWPQPELRQLLR  420 (478)
Q Consensus       380 ~~L~l~~c~~l~~l-----p~~l~~l~~L~~L~l~~c~~~~~~~~~  420 (478)
                      +.|.++.|...++.     ...-.+...|+.+.+++||......++
T Consensus       375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le  420 (483)
T KOG4341|consen  375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE  420 (483)
T ss_pred             ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence            99999999877654     334456789999999999944444433

>PLN03150 hypothetical protein; Provisional

Probab=98.64  E-value=6.6e-08  Score=100.74  Aligned_cols=89  Identities=20%  Similarity=0.290  Sum_probs=50.2

Q ss_pred             EeEEEecCCCCC-cCCccCCCCCCCceEeecCCCCC-ccchhhhCCCCCcEEeCCCCcCc-ccchhhhccccCcEEEeeC
Q 047959          136 LRVLNLGSAVLD-QYPPGLENLFYLKYLKLNIPSLK-CLPSLLCTLLNLQTLEMPSSYID-HSPEDIWMMQKLMHLNFGS  212 (478)
Q Consensus       136 L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~  212 (478)
                      ++.|+|+++.+. .+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|++++|.+. .+|+.++++++|++|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            555555555554 55555555556666666555555 55555555556666666555443 4555555555666666555


Q ss_pred             CCCCCCCCCCCC
Q 047959          213 ITLPAPPKNNSS  224 (478)
Q Consensus       213 ~~~~~~~~~~~~  224 (478)
                      |.+.+.+|..+.
T Consensus       500 N~l~g~iP~~l~  511 (623)
T PLN03150        500 NSLSGRVPAALG  511 (623)
T ss_pred             CcccccCChHHh
Confidence            555555554443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=3.1e-10  Score=101.35  Aligned_cols=200  Identities=21%  Similarity=0.186  Sum_probs=113.7

Q ss_pred             CCcEEeCCCCcC--cccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEe
Q 047959          181 NLQTLEMPSSYI--DHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISG  258 (478)
Q Consensus       181 ~L~~L~l~~~~l--~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~  258 (478)
                      .||+||++...+  ..+-.-+..|.+|+.|.+.++.+...+.                      ..+..-.+|+.|+++.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~----------------------~~iAkN~~L~~lnlsm  243 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV----------------------NTIAKNSNLVRLNLSM  243 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH----------------------HHHhccccceeecccc
Confidence            366666666544  2233334555566665554444333333                      3344445555555555


Q ss_pred             cCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeec--CCCCCcCcc-cCCCCCCeEEEe
Q 047959          259 DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTE--LVEDPMPTL-EELPHLEVLKLK  335 (478)
Q Consensus       259 ~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l-~~l~~L~~L~L~  335 (478)
                      ++......+.-.+.+++.|..|++++|...+..-.+  .+...-++|+.|+|+++.  +.......+ ..+|+|..|+|+
T Consensus       244 ~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv--~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLS  321 (419)
T KOG2120|consen  244 CSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV--AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLS  321 (419)
T ss_pred             ccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH--HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccc
Confidence            542333344445667777777777776655422110  222224688888888874  222333333 578888888888


Q ss_pred             eCcccCceeEEeCCCCCcccceeEEecCCCCC-ceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCE
Q 047959          336 QNSYLERKLACVGCSSFPQLKILHLKSMLWLE-EWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCK  405 (478)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~  405 (478)
                      +|.......... +..|+.|++|.++.|-.+. .--......|+|..|++.+|-.-+...-....+++|+.
T Consensus       322 D~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki  391 (419)
T KOG2120|consen  322 DSVMLKNDCFQE-FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI  391 (419)
T ss_pred             cccccCchHHHH-HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence            776433221111 5678889999998887665 22234578899999999988644433223344555553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.59  E-value=3.2e-08  Score=84.66  Aligned_cols=106  Identities=24%  Similarity=0.239  Sum_probs=52.4

Q ss_pred             CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhh-hCCCCCcEEeCCCCcCcccc--hhhhccccCcE
Q 047959          131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLL-CTLLNLQTLEMPSSYIDHSP--EDIWMMQKLMH  207 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~  207 (478)
                      ..+.+|++|++++|.++.+.. +..+++|+.|++++|.|+.+...+ ..+++|++|++++|+|..+.  ..+..+++|++
T Consensus        39 ~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~  117 (175)
T PF14580_consen   39 ATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV  117 (175)
T ss_dssp             TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred             hhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence            467889999999999998865 888999999999999999987665 46899999999999886664  45778999999


Q ss_pred             EEeeCCCCCCCCCC----CCCCCCCCcEeCcccCC
Q 047959          208 LNFGSITLPAPPKN----NSSPLKNLIFISALHPS  238 (478)
Q Consensus       208 L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~  238 (478)
                      |++.+|..... +.    .+..+++|+.|+.....
T Consensus       118 L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen  118 LSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             EE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEETT
T ss_pred             eeccCCcccch-hhHHHHHHHHcChhheeCCEEcc
Confidence            99977754321 11    13456777777755544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.51  E-value=9.2e-08  Score=67.06  Aligned_cols=57  Identities=30%  Similarity=0.497  Sum_probs=32.3

Q ss_pred             eEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCc
Q 047959          135 HLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSY  191 (478)
Q Consensus       135 ~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~  191 (478)
                      +|++|++++|.++.+|.. +.++++|++|++++|.+..+|+ .+.++++|++|++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            455666666666655543 5556666666666666655443 34555555555555553

...

>PLN03150 hypothetical protein; Provisional

Probab=98.41  E-value=5.6e-07  Score=93.87  Aligned_cols=101  Identities=16%  Similarity=0.281  Sum_probs=60.2

Q ss_pred             CcEEeCCCCcC-cccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEe
Q 047959          182 LQTLEMPSSYI-DHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISG  258 (478)
Q Consensus       182 L~~L~l~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~  258 (478)
                      ++.|+|+++.+ ..+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++.+|.  +..|..++++++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            55666666644 3456666666666666666666555666666666666666666665  45556666666666666666


Q ss_pred             cCCcchhhHHHhccCC-CCCCEEEEEe
Q 047959          259 DLSYYHSGVSKSLCQL-HKLECLKLVN  284 (478)
Q Consensus       259 ~~~~~~~~l~~~l~~~-~~L~~L~l~~  284 (478)
                      |  ...+.+|..+... .++..+++.+
T Consensus       500 N--~l~g~iP~~l~~~~~~~~~l~~~~  524 (623)
T PLN03150        500 N--SLSGRVPAALGGRLLHRASFNFTD  524 (623)
T ss_pred             C--cccccCChHHhhccccCceEEecC
Confidence            6  4445555555432 3455666654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.36  E-value=2.9e-07  Score=64.53  Aligned_cols=58  Identities=22%  Similarity=0.312  Sum_probs=50.0

Q ss_pred             CCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEeeCCC
Q 047959          157 FYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFGSIT  214 (478)
Q Consensus       157 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~  214 (478)
                      ++|++|++++|.+..+|. .+.++++|++|++++|.+..+++ .+..+++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            478999999999998885 67889999999999999988874 57899999999997764

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.33  E-value=4.4e-08  Score=97.46  Aligned_cols=242  Identities=23%  Similarity=0.252  Sum_probs=144.9

Q ss_pred             CCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEee
Q 047959          132 KFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFG  211 (478)
Q Consensus       132 ~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~  211 (478)
                      .+..+..++++.+.+...-..+..+.+|+.|++.+|.|..+...+..+.+|++|++++|.|.++. ++..++.|+.|+++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS  148 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheec
Confidence            34556666677777776555577788888888888888877655777888888888888888874 36777778888887


Q ss_pred             CCCCCCCCCCCCCCCCCCcEeCcccCCCCCccc--cCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959          212 SITLPAPPKNNSSPLKNLIFISALHPSSCTPDI--LGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR  289 (478)
Q Consensus       212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~  289 (478)
                      +|.+.  -..++..+++|+.+++.++.......  +..+.+++.+.+.++.  ...  ...+..+..+..+++.. +.+.
T Consensus       149 ~N~i~--~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~--i~~--i~~~~~~~~l~~~~l~~-n~i~  221 (414)
T KOG0531|consen  149 GNLIS--DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS--IRE--IEGLDLLKKLVLLSLLD-NKIS  221 (414)
T ss_pred             cCcch--hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc--hhc--ccchHHHHHHHHhhccc-ccce
Confidence            76443  22345557788888877776222222  4677788888888774  110  01111222333334443 4444


Q ss_pred             ccCccccccccCCCC--ceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCC
Q 047959          290 QLSRMILSEYKFPPS--LTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLE  367 (478)
Q Consensus       290 ~~p~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~  367 (478)
                      .+-    .+.. +..  |+.+++.++.+... ...+..+..+..|++.++.+.....    ....+.+..+.........
T Consensus       222 ~~~----~l~~-~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~~~----~~~~~~~~~~~~~~~~~~~  291 (414)
T KOG0531|consen  222 KLE----GLNE-LVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNLEG----LERLPKLSELWLNDNKLAL  291 (414)
T ss_pred             ecc----Cccc-chhHHHHHHhcccCccccc-cccccccccccccchhhcccccccc----ccccchHHHhccCcchhcc
Confidence            332    1222 333  78888888875432 1456667777788887666554331    3344555555555432211


Q ss_pred             ---ceeeC-CCcccccceeEEecCCCCC
Q 047959          368 ---EWTMG-AGAMPKLESLILNPCAYLR  391 (478)
Q Consensus       368 ---~l~~~-~~~~~~L~~L~l~~c~~l~  391 (478)
                         ..... ....+.++.+.+..++.-.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  292 SEAISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             hhhhhccccccccccccccccccCcccc
Confidence               11111 3456777777777776544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.30  E-value=4.7e-08  Score=97.26  Aligned_cols=220  Identities=22%  Similarity=0.191  Sum_probs=143.3

Q ss_pred             cCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEE
Q 047959          130 CKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLN  209 (478)
Q Consensus       130 ~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  209 (478)
                      ...++.|..|++.+|.+..+...+..+++|++|++++|.|+.+. .+..+..|+.|++.+|.+..+.. +..++.|+.++
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~  168 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-LESLKSLKLLD  168 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC-Cccchhhhccc
Confidence            35678899999999999988777888999999999999999875 56778889999999998888854 56689999999


Q ss_pred             eeCCCCCCCCC-CCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCC--CCCEEEEEecC
Q 047959          210 FGSITLPAPPK-NNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLH--KLECLKLVNEG  286 (478)
Q Consensus       210 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~--~L~~L~l~~~~  286 (478)
                      +++|.....-+ . ...+.+++.+.+.++.......+..+..+..+++..+.-...    ..+..+.  +|+.+.+++ +
T Consensus       169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~----~~l~~~~~~~L~~l~l~~-n  242 (414)
T KOG0531|consen  169 LSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKL----EGLNELVMLHLRELYLSG-N  242 (414)
T ss_pred             CCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceec----cCcccchhHHHHHHhccc-C
Confidence            97776543222 1 467788888888877633333333444444444444420000    1111222  377888887 7


Q ss_pred             cccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCcee--EEeCCCCCcccceeEEecC
Q 047959          287 KMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKL--ACVGCSSFPQLKILHLKSM  363 (478)
Q Consensus       287 ~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~~L~~L~L~~~  363 (478)
                      .+...+.   .+.. +..+..|++.++.+..  ...+...+.+..+....+.+....-  ...+....+.++...+...
T Consensus       243 ~i~~~~~---~~~~-~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (414)
T KOG0531|consen  243 RISRSPE---GLEN-LKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELN  315 (414)
T ss_pred             ccccccc---cccc-cccccccchhhccccc--cccccccchHHHhccCcchhcchhhhhccccccccccccccccccC
Confidence            6666644   5666 7888888888887533  3334455566666666555432110  0000344566666666653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=1e-07  Score=85.46  Aligned_cols=84  Identities=14%  Similarity=0.170  Sum_probs=49.2

Q ss_pred             CCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceee--CCCcccccceeEEecCCCCCCCcc------cc
Q 047959          326 LPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTM--GAGAMPKLESLILNPCAYLRKLPE------EQ  397 (478)
Q Consensus       326 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~lp~------~l  397 (478)
                      +|++..+-+..|.+....-... ...+|.+-.|+|.. +++.+|..  ....||.|..|.+.++|..+.+-.      -+
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~-se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llI  275 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKG-SEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLI  275 (418)
T ss_pred             cccchheeeecCcccchhhccc-CCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEE
Confidence            3555555555554433332222 45566666666665 45665542  235678888888888776654422      35


Q ss_pred             CCCCCCCEEEEecC
Q 047959          398 WCIKSLCKLELHWP  411 (478)
Q Consensus       398 ~~l~~L~~L~l~~c  411 (478)
                      +++++++.|+=+..
T Consensus       276 aRL~~v~vLNGskI  289 (418)
T KOG2982|consen  276 ARLTKVQVLNGSKI  289 (418)
T ss_pred             eeccceEEecCccc
Confidence            67888888876544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.19  E-value=2e-07  Score=83.71  Aligned_cols=85  Identities=22%  Similarity=0.243  Sum_probs=52.4

Q ss_pred             ccCCCCeEeEEEecCCCCC---cCCccCCCCCCCceEeecCCCCCccchhh-hCCCCCcEEeCCCCcC--cccchhhhcc
Q 047959          129 FCKKFKHLRVLNLGSAVLD---QYPPGLENLFYLKYLKLNIPSLKCLPSLL-CTLLNLQTLEMPSSYI--DHSPEDIWMM  202 (478)
Q Consensus       129 ~~~~~~~L~~L~L~~~~l~---~lp~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~l--~~lp~~i~~l  202 (478)
                      |-..++.++.|||.+|.++   ++..-+.++++|++|++++|++..-..+. ..+.+|++|-+.++.+  ......+..+
T Consensus        66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l  145 (418)
T KOG2982|consen   66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL  145 (418)
T ss_pred             HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence            3366777777788777776   33344557777788887777654211121 3456777777777743  4444455666


Q ss_pred             ccCcEEEeeCC
Q 047959          203 QKLMHLNFGSI  213 (478)
Q Consensus       203 ~~L~~L~l~~~  213 (478)
                      ++++.|+++.|
T Consensus       146 P~vtelHmS~N  156 (418)
T KOG2982|consen  146 PKVTELHMSDN  156 (418)
T ss_pred             hhhhhhhhccc
Confidence            67777766555

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.18  E-value=2.2e-06  Score=55.07  Aligned_cols=39  Identities=31%  Similarity=0.381  Sum_probs=24.1

Q ss_pred             CCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccc
Q 047959          158 YLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSP  196 (478)
Q Consensus       158 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp  196 (478)
                      +|++|++++|+|+.+|..+++|++|++|++++|.+.+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            566666666666666666666666666666666665554

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.16  E-value=2.3e-07  Score=82.26  Aligned_cols=247  Identities=17%  Similarity=0.137  Sum_probs=151.2

Q ss_pred             CCCeEeEEEecCCCCC-----cCCccCCCCCCCceEeecCC--C-CC-ccch-------hhhCCCCCcEEeCCCCcC-cc
Q 047959          132 KFKHLRVLNLGSAVLD-----QYPPGLENLFYLKYLKLNIP--S-LK-CLPS-------LLCTLLNLQTLEMPSSYI-DH  194 (478)
Q Consensus       132 ~~~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~--~-i~-~lp~-------~~~~l~~L~~L~l~~~~l-~~  194 (478)
                      .+..+..++||||.|.     .+...|.+-.+|+..+++.-  + .+ .+|+       .+.+|++|++.+++.|-+ ..
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            3778899999999976     55555777788888888762  1 11 4443       356788899999988833 34


Q ss_pred             cc----hhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecC--CcchhhHH
Q 047959          195 SP----EDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDL--SYYHSGVS  268 (478)
Q Consensus       195 lp----~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~  268 (478)
                      .|    +.|++-+.|.||.+++|.++..--..+++  .|++|-       ......+-|.|+...+..|.  +.......
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~la-------~nKKaa~kp~Le~vicgrNRlengs~~~~a  178 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHLA-------YNKKAADKPKLEVVICGRNRLENGSKELSA  178 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHHH-------HHhhhccCCCceEEEeccchhccCcHHHHH
Confidence            44    34566788888888555332211111221  122221       11223456778888887775  22333444


Q ss_pred             HhccCCCCCCEEEEEecCcccc--cCcc-ccccccCCCCceEEEEEeecCCCCCcC----cccCCCCCCeEEEeeCcccC
Q 047959          269 KSLCQLHKLECLKLVNEGKMRQ--LSRM-ILSEYKFPPSLTQLSLSNTELVEDPMP----TLEELPHLEVLKLKQNSYLE  341 (478)
Q Consensus       269 ~~l~~~~~L~~L~l~~~~~l~~--~p~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~L~~~~~~~  341 (478)
                      ..+..-.+|+.+.+.. |.+..  +... +..+.. +++|+.|+|.+|.++.....    .+...+.|++|.+.+|-++.
T Consensus       179 ~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         179 ALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             HHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence            5555667899999987 65541  1110 113344 88999999999987654332    34567889999998887664


Q ss_pred             ceeEEe----CCCCCcccceeEEecCCCCCcee-------eCCCcccccceeEEecCCC
Q 047959          342 RKLACV----GCSSFPQLKILHLKSMLWLEEWT-------MGAGAMPKLESLILNPCAY  389 (478)
Q Consensus       342 ~~~~~~----~~~~~~~L~~L~L~~~~~l~~l~-------~~~~~~~~L~~L~l~~c~~  389 (478)
                      ......    .-..+|+|..|...++..-....       ...+++|-|..|.+.+|..
T Consensus       257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~  315 (388)
T COG5238         257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI  315 (388)
T ss_pred             ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence            332110    02346788888887743222111       1236789999999988864

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.11  E-value=5.6e-07  Score=93.73  Aligned_cols=124  Identities=18%  Similarity=0.222  Sum_probs=73.5

Q ss_pred             CeEeEEEecCCC-CC-cCCccCC-CCCCCceEeecCCCCC--ccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEE
Q 047959          134 KHLRVLNLGSAV-LD-QYPPGLE-NLFYLKYLKLNIPSLK--CLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHL  208 (478)
Q Consensus       134 ~~L~~L~L~~~~-l~-~lp~~~~-~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L  208 (478)
                      .+|+.||++|.. +. .-|..++ .+|+|+.|.+.+-.+.  ++-.-..++++|..||++++++..+ .++++|++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            567788887766 32 4444444 5678888888775544  3444456677888888888877777 667788888887


Q ss_pred             EeeCCC-CCC-CCCCCCCCCCCCcEeCcccCC-CC-------CccccCCCCCCcEEEEEec
Q 047959          209 NFGSIT-LPA-PPKNNSSPLKNLIFISALHPS-SC-------TPDILGRLPNVQTLRISGD  259 (478)
Q Consensus       209 ~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~~~-~~-------~~~~l~~l~~L~~L~l~~~  259 (478)
                      .+ .|- +.. ..-..+-++++|+.|+++... ..       ..+.-..+|+|+.||.++.
T Consensus       201 ~m-rnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT  260 (699)
T KOG3665|consen  201 SM-RNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT  260 (699)
T ss_pred             hc-cCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence            77 331 110 001123455666666665554 11       1122234667777777766

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.08  E-value=7.2e-07  Score=79.17  Aligned_cols=222  Identities=17%  Similarity=0.167  Sum_probs=128.3

Q ss_pred             CCCCeEeEEEecCCCCC----cCC-------ccCCCCCCCceEeecCCCCC-ccchh----hhCCCCCcEEeCCCCcCcc
Q 047959          131 KKFKHLRVLNLGSAVLD----QYP-------PGLENLFYLKYLKLNIPSLK-CLPSL----LCTLLNLQTLEMPSSYIDH  194 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~----~lp-------~~~~~l~~L~~L~l~~~~i~-~lp~~----~~~l~~L~~L~l~~~~l~~  194 (478)
                      .+-++|++.+++.-...    .++       ..+-+|++|+..+|+.|.+. +.|+.    ++.-..|..|.+.+|.++.
T Consensus        55 a~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp  134 (388)
T COG5238          55 ANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP  134 (388)
T ss_pred             hhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence            56788899888865422    333       33568899999999999887 55543    5677899999999997765


Q ss_pred             cch-hhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CC-----CccccCCCCCCcEEEEEecCC--c-ch
Q 047959          195 SPE-DIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SC-----TPDILGRLPNVQTLRISGDLS--Y-YH  264 (478)
Q Consensus       195 lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~-----~~~~l~~l~~L~~L~l~~~~~--~-~~  264 (478)
                      +.. .|++  .|.+|-.  |.       -..+-+.|++.....++ ..     ....+..-.+|+.+.+..|..  . ..
T Consensus       135 ~aG~rigk--al~~la~--nK-------Kaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~  203 (388)
T COG5238         135 IAGGRIGK--ALFHLAY--NK-------KAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVT  203 (388)
T ss_pred             cchhHHHH--HHHHHHH--Hh-------hhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhH
Confidence            532 1221  1111111  10       11122334444333333 11     112233335777777777741  1 11


Q ss_pred             hhHHHhccCCCCCCEEEEEecCcccc-----cCccccccccCCCCceEEEEEeecCCCCCcCcc------cCCCCCCeEE
Q 047959          265 SGVSKSLCQLHKLECLKLVNEGKMRQ-----LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTL------EELPHLEVLK  333 (478)
Q Consensus       265 ~~l~~~l~~~~~L~~L~l~~~~~l~~-----~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l------~~l~~L~~L~  333 (478)
                      .-+...+..+.+|+.|+++. |.++.     +..   .+.. .+.|+.|.+.+|-++......+      ...|+|..|.
T Consensus       204 ~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~---al~~-W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~  278 (388)
T COG5238         204 MLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLAD---ALCE-WNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLP  278 (388)
T ss_pred             HHHHHHHHHhCcceeeeccc-cchhhhhHHHHHH---Hhcc-cchhhhccccchhhccccHHHHHHHhhhhcCCCccccc
Confidence            12233455678888888887 65552     222   2344 5678888888887655433321      2357888888


Q ss_pred             EeeCcccCceeEEeC-----CCCCcccceeEEecCCCCCce
Q 047959          334 LKQNSYLERKLACVG-----CSSFPQLKILHLKSMLWLEEW  369 (478)
Q Consensus       334 L~~~~~~~~~~~~~~-----~~~~~~L~~L~L~~~~~l~~l  369 (478)
                      ..+|...+..+....     .+..|-|..|.+.+ +.+.+.
T Consensus       279 ~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng-Nr~~E~  318 (388)
T COG5238         279 GDYNERRGGIILDISLNEFEQDAVPLLVDLERNG-NRIKEL  318 (388)
T ss_pred             cchhhhcCceeeeechhhhhhcccHHHHHHHHcc-CcchhH
Confidence            887776554443210     35678888888887 345433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.06  E-value=3.7e-06  Score=54.03  Aligned_cols=40  Identities=30%  Similarity=0.452  Sum_probs=35.4

Q ss_pred             CeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccc
Q 047959          134 KHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLP  173 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp  173 (478)
                      ++|++|++++|.++.+|..++++++|++|++++|.++.++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            4689999999999999988999999999999999999776

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.93  E-value=1.7e-07  Score=93.63  Aligned_cols=125  Identities=25%  Similarity=0.242  Sum_probs=88.7

Q ss_pred             CCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCce
Q 047959          228 NLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLT  306 (478)
Q Consensus       228 ~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~  306 (478)
                      .|.+.+.+.|. ..+-..+.-++.|+.|+++.|.  ...  ...+..+++|++|+|+. |.+..+|..  .... + .|.
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk--~~~--v~~Lr~l~~LkhLDlsy-N~L~~vp~l--~~~g-c-~L~  235 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNK--FTK--VDNLRRLPKLKHLDLSY-NCLRHVPQL--SMVG-C-KLQ  235 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh--hhh--hHHHHhccccccccccc-chhcccccc--chhh-h-hhe
Confidence            34555555554 5555667778889999999872  322  22677889999999998 888888851  2222 3 499


Q ss_pred             EEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCC
Q 047959          307 QLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSML  364 (478)
Q Consensus       307 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  364 (478)
                      .|.+++|.++  .+..+.++.+|+.|++++|.+.+..-... ++.+..|+.|+|.+++
T Consensus       236 ~L~lrnN~l~--tL~gie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  236 LLNLRNNALT--TLRGIENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             eeeecccHHH--hhhhHHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcCCc
Confidence            9999999864  35567888899999999888766443322 5677888888888865

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.90  E-value=3e-05  Score=74.83  Aligned_cols=69  Identities=19%  Similarity=0.203  Sum_probs=49.5

Q ss_pred             CCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCC-CCCccchhhhCCCCCcEEeCCCC-cCcccchhhhccccCcEEE
Q 047959          132 KFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIP-SLKCLPSLLCTLLNLQTLEMPSS-YIDHSPEDIWMMQKLMHLN  209 (478)
Q Consensus       132 ~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~  209 (478)
                      .+++++.|++++|.++.+|. +  ..+|+.|.+++| .++.+|..+.  .+|+.|++++| .+..+|.      .|+.|+
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L~  118 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSLE  118 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccceEE
Confidence            45778889999988888773 2  236888888875 4567776553  57888999888 7777775      356666


Q ss_pred             ee
Q 047959          210 FG  211 (478)
Q Consensus       210 l~  211 (478)
                      ++
T Consensus       119 L~  120 (426)
T PRK15386        119 IK  120 (426)
T ss_pred             eC
Confidence            64

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.79  E-value=4.4e-07  Score=90.83  Aligned_cols=174  Identities=20%  Similarity=0.195  Sum_probs=80.6

Q ss_pred             CCCCeEeEEEecCCCCCcCCccCCCCC-CCceEeecCCCCCccchh----hh------CCCCCcEEeCCCCcCcccchhh
Q 047959          131 KKFKHLRVLNLGSAVLDQYPPGLENLF-YLKYLKLNIPSLKCLPSL----LC------TLLNLQTLEMPSSYIDHSPEDI  199 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~-~L~~L~l~~~~i~~lp~~----~~------~l~~L~~L~l~~~~l~~lp~~i  199 (478)
                      ..++.||+|.|.+|.+...-. +..+. +|+.|.-++. +..+-..    .+      .-..|.+.+.+.|.+..+-..+
T Consensus       106 fpF~sLr~LElrg~~L~~~~G-L~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SL  183 (1096)
T KOG1859|consen  106 FPFRSLRVLELRGCDLSTAKG-LQELRHQLEKLICHNS-LDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESL  183 (1096)
T ss_pred             ccccceeeEEecCcchhhhhh-hHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHH
Confidence            578889999999998763211 11111 2222222110 0000000    00      0013444444444444444444


Q ss_pred             hccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccc-cCCCCCCcEEEEEecCCcchhhHHHhccCCCCC
Q 047959          200 WMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDI-LGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKL  277 (478)
Q Consensus       200 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L  277 (478)
                      .-++.|++|++++|.+...  +.+..++.|++|+++.|. ...+.. -..+. |+.|.+++|   ... ....+.++++|
T Consensus       184 qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN---~l~-tL~gie~LksL  256 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN---ALT-TLRGIENLKSL  256 (1096)
T ss_pred             HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeeccc---HHH-hhhhHHhhhhh
Confidence            4445555555544433211  133444444444444443 111111 11122 666667665   111 22345567777


Q ss_pred             CEEEEEecCcccccCccccccccCCCCceEEEEEeecCC
Q 047959          278 ECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELV  316 (478)
Q Consensus       278 ~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~  316 (478)
                      +.|+++. |-+..... +..+.. +..|+.|.|.+|++-
T Consensus       257 ~~LDlsy-Nll~~hse-L~pLws-Ls~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  257 YGLDLSY-NLLSEHSE-LEPLWS-LSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hccchhH-hhhhcchh-hhHHHH-HHHHHHHhhcCCccc
Confidence            7777776 55543322 002333 667888888888763

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.79  E-value=6.1e-05  Score=72.69  Aligned_cols=32  Identities=25%  Similarity=0.191  Sum_probs=16.8

Q ss_pred             cccceeEEecCCCCCceeeCCCcccccceeEEecC
Q 047959          353 PQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPC  387 (478)
Q Consensus       353 ~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c  387 (478)
                      ++|++|.+.+|..+. +|..  -.++|+.|.++.+
T Consensus       156 sSLk~L~Is~c~~i~-LP~~--LP~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNII-LPEK--LPESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCccc-Cccc--ccccCcEEEeccc
Confidence            466777776665332 2211  1246666666654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.73  E-value=1.7e-05  Score=82.89  Aligned_cols=100  Identities=22%  Similarity=0.177  Sum_probs=49.5

Q ss_pred             CCceEeecCCCCC--ccchhhh-CCCCCcEEeCCCCcC--cccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEe
Q 047959          158 YLKYLKLNIPSLK--CLPSLLC-TLLNLQTLEMPSSYI--DHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFI  232 (478)
Q Consensus       158 ~L~~L~l~~~~i~--~lp~~~~-~l~~L~~L~l~~~~l--~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  232 (478)
                      +|++|+++|...-  .-|..++ .||+|+.|.+++-.+  .++..-..++++|..||+|+.....-  .+++++++||.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            5666666653321  2222332 356666666665522  22333344566666666644433211  455666666666


Q ss_pred             CcccCC---CCCccccCCCCCCcEEEEEec
Q 047959          233 SALHPS---SCTPDILGRLPNVQTLRISGD  259 (478)
Q Consensus       233 ~l~~~~---~~~~~~l~~l~~L~~L~l~~~  259 (478)
                      .+.+-.   ......+-+|++|+.||+|..
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            655544   223334455555555555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.63  E-value=8.8e-05  Score=63.39  Aligned_cols=60  Identities=27%  Similarity=0.261  Sum_probs=27.7

Q ss_pred             eEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhC-CCCCcEEeCCCCcCccc
Q 047959          135 HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCT-LLNLQTLEMPSSYIDHS  195 (478)
Q Consensus       135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~-l~~L~~L~l~~~~l~~l  195 (478)
                      ....+||++|.+..++. +..++.|..|.+++|+|+.+-+.+.. +++|++|.+.+|++.++
T Consensus        43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l  103 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL  103 (233)
T ss_pred             ccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh
Confidence            34445555555443333 44445555555555555544433332 33455555555544333

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.56  E-value=6.9e-05  Score=64.04  Aligned_cols=121  Identities=20%  Similarity=0.197  Sum_probs=70.4

Q ss_pred             eEEEecCCCCCcCCccCC-CCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhc-cccCcEEEeeCCC
Q 047959          137 RVLNLGSAVLDQYPPGLE-NLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWM-MQKLMHLNFGSIT  214 (478)
Q Consensus       137 ~~L~L~~~~l~~lp~~~~-~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~-l~~L~~L~l~~~~  214 (478)
                      +.++|++..+..+-. ++ -..+...++|+.|.+..++ .+..++.|.+|.+.+|.|..+.+.+.. +++|+.|.+++|.
T Consensus        22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             cccccccccccchhh-ccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            566777766553332 22 2336677888888777554 455778888888888888887666654 4678888886664


Q ss_pred             CCC-CCCCCCCCCCCCcEeCcccCC-----CCCccccCCCCCCcEEEEEec
Q 047959          215 LPA-PPKNNSSPLKNLIFISALHPS-----SCTPDILGRLPNVQTLRISGD  259 (478)
Q Consensus       215 ~~~-~~~~~~~~l~~L~~L~l~~~~-----~~~~~~l~~l~~L~~L~l~~~  259 (478)
                      +.. .--..+..+++|++|.+.++.     ..-...+..+++|+.||+...
T Consensus       100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            432 111223445556665555554     122223445555555555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.43  E-value=8.2e-06  Score=83.17  Aligned_cols=110  Identities=17%  Similarity=0.083  Sum_probs=49.9

Q ss_pred             CCCCcEEeCCCC-cCcc--cchhhhccccCcEEEeeCCCCC-CCC----CCCCCCCCCCcEeCcccCC---CCCcccc-C
Q 047959          179 LLNLQTLEMPSS-YIDH--SPEDIWMMQKLMHLNFGSITLP-APP----KNNSSPLKNLIFISALHPS---SCTPDIL-G  246 (478)
Q Consensus       179 l~~L~~L~l~~~-~l~~--lp~~i~~l~~L~~L~l~~~~~~-~~~----~~~~~~l~~L~~L~l~~~~---~~~~~~l-~  246 (478)
                      +++|+.|.+.+| .+..  +-.....+++|+.|+++++... ...    ......+.+|+.|++..+.   ......+ .
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            455555555555 4433  2233344555555555331111 000    1112233455555555544   1112222 2


Q ss_pred             CCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcc
Q 047959          247 RLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKM  288 (478)
Q Consensus       247 ~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l  288 (478)
                      .+++|+.|.+.+|.......+......+++|++|++++|..+
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            256666666555532244455555556666666666665544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.40  E-value=4.6e-05  Score=60.94  Aligned_cols=75  Identities=19%  Similarity=0.245  Sum_probs=42.4

Q ss_pred             EeEEEecCCCCCcCCccCCC-CCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEe
Q 047959          136 LRVLNLGSAVLDQYPPGLEN-LFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNF  210 (478)
Q Consensus       136 L~~L~L~~~~l~~lp~~~~~-l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l  210 (478)
                      |...+|++|.+..+|+.+.. ++.++.|++++|.+.++|..+..++.|+.|+++.|.+...|..+..|.+|-.|+.
T Consensus        55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence            55555566555555555432 3355555666555555555555555566666665555555555555555555555

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.37  E-value=9.8e-06  Score=82.60  Aligned_cols=234  Identities=25%  Similarity=0.195  Sum_probs=123.9

Q ss_pred             CCCCceEeecCCC-CCc--cchhhhCCCCCcEEeCCCC--cCcccc----hhhhccccCcEEEeeCCCC-CCCCCCC-CC
Q 047959          156 LFYLKYLKLNIPS-LKC--LPSLLCTLLNLQTLEMPSS--YIDHSP----EDIWMMQKLMHLNFGSITL-PAPPKNN-SS  224 (478)
Q Consensus       156 l~~L~~L~l~~~~-i~~--lp~~~~~l~~L~~L~l~~~--~l~~lp----~~i~~l~~L~~L~l~~~~~-~~~~~~~-~~  224 (478)
                      ++.|+.|.+.++. +..  +-.....+++|+.|++++|  .+...+    .....+.+|+.|+++++.. ....-.. ..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            5667777666653 333  3345566677777777763  222211    2233557777777755542 1111111 12


Q ss_pred             CCCCCcEeCcccCC----CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCcccccccc
Q 047959          225 PLKNLIFISALHPS----SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYK  300 (478)
Q Consensus       225 ~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~  300 (478)
                      .+++|++|.+..|.    ..+......+++|++|+++.+.......+.....++++|+.|.+.....             
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~-------------  333 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG-------------  333 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-------------
Confidence            36678887755554    2233445678889999999986333444555566777777766544111             


Q ss_pred             CCCCceEEEEEeecCCC---CCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeCCCccc
Q 047959          301 FPPSLTQLSLSNTELVE---DPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMP  377 (478)
Q Consensus       301 ~~~~L~~L~l~~~~~~~---~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~  377 (478)
                       ++.++.+.+.++....   ...-....+++++.+.+..+.......... ..+++.|.          ..+........
T Consensus       334 -c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-l~gc~~l~----------~~l~~~~~~~~  401 (482)
T KOG1947|consen  334 -CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELS-LRGCPNLT----------ESLELRLCRSD  401 (482)
T ss_pred             -CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHH-hcCCcccc----------hHHHHHhccCC
Confidence             3445555554443211   112234567777777777666332221111 33444441          12211122233


Q ss_pred             ccceeEEecCCCCCCCcc-ccCC-CCCCCEEEEecCcHH
Q 047959          378 KLESLILNPCAYLRKLPE-EQWC-IKSLCKLELHWPQPE  414 (478)
Q Consensus       378 ~L~~L~l~~c~~l~~lp~-~l~~-l~~L~~L~l~~c~~~  414 (478)
                      .++.|.+..|...+.--. .... +..++.+++.+|+..
T Consensus       402 ~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  402 SLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI  440 (482)
T ss_pred             ccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence            378888888876553211 1111 667777888887633

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.28  E-value=2.2e-05  Score=62.74  Aligned_cols=73  Identities=25%  Similarity=0.408  Sum_probs=66.8

Q ss_pred             ccccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhh
Q 047959          127 ENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDI  199 (478)
Q Consensus       127 ~~~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i  199 (478)
                      +.|-.+++.++.|++++|.++.+|.++..++.||.|+++.|.+...|..+..|.+|-.|+..++.+..+|..+
T Consensus        70 ~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl  142 (177)
T KOG4579|consen   70 KKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDL  142 (177)
T ss_pred             HHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHHH
Confidence            4455788889999999999999999999999999999999999999999999999999999999888888654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.84  E-value=0.0007  Score=60.44  Aligned_cols=106  Identities=18%  Similarity=0.166  Sum_probs=58.1

Q ss_pred             CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCC--CCC-ccchhhhCCCCCcEEeCCCCcCcccc--hhhhccccC
Q 047959          131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIP--SLK-CLPSLLCTLLNLQTLEMPSSYIDHSP--EDIWMMQKL  205 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~--~i~-~lp~~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L  205 (478)
                      -.+..|..|++.++.++.+-. +-.+++|++|.++.|  .+. .++..+..+++|++|++++|+++.+.  ..+..+++|
T Consensus        40 d~~~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             ccccchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            344455555566655543322 335667777777777  444 55555556677777777777554321  224566677


Q ss_pred             cEEEeeCCCCCCCCCC----CCCCCCCCcEeCcccCC
Q 047959          206 MHLNFGSITLPAPPKN----NSSPLKNLIFISALHPS  238 (478)
Q Consensus       206 ~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~  238 (478)
                      ..|++ +|+....+-.    .+.-+++|++|+-.+..
T Consensus       119 ~~Ldl-~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  119 KSLDL-FNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             hhhhc-ccCCccccccHHHHHHHHhhhhccccccccC
Confidence            77777 3332222211    13345566666655554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.58  E-value=0.00061  Score=60.81  Aligned_cols=63  Identities=17%  Similarity=0.136  Sum_probs=34.5

Q ss_pred             CCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCC--cC-cccchhhhccccCcEEEeeCCCCC
Q 047959          153 LENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSS--YI-DHSPEDIWMMQKLMHLNFGSITLP  216 (478)
Q Consensus       153 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~--~l-~~lp~~i~~l~~L~~L~l~~~~~~  216 (478)
                      ...+..|+.|++.+..++++- .+-.|++|++|.++.|  .+ ..++.-..++++|++|+++.|.+.
T Consensus        39 ~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            334455666666655544321 2235567777777776  32 334444455577777777666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.44  E-value=0.00012  Score=65.56  Aligned_cols=101  Identities=20%  Similarity=0.177  Sum_probs=62.5

Q ss_pred             CeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccc--hhhhccccCcEEEee
Q 047959          134 KHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSP--EDIWMMQKLMHLNFG  211 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~  211 (478)
                      .+.+.|+..||.++.+.- +.+|+.|++|.|+-|.|+.+. .+..|.+|+.|+|+.|.|.++-  ..+.++++|+.|-+.
T Consensus        19 ~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            345667777777664332 346777778888777777664 5667777888888877776664  345577777777776


Q ss_pred             CCCCCCCCCCC-----CCCCCCCcEeCccc
Q 047959          212 SITLPAPPKNN-----SSPLKNLIFISALH  236 (478)
Q Consensus       212 ~~~~~~~~~~~-----~~~l~~L~~L~l~~  236 (478)
                      .|.-.+.-+..     +.-+++|+.|+-..
T Consensus        97 ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~  126 (388)
T KOG2123|consen   97 ENPCCGEAGQNYRRKVLRVLPNLKKLDNVP  126 (388)
T ss_pred             cCCcccccchhHHHHHHHHcccchhccCcc
Confidence            55433332222     23455666665433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.31  E-value=0.00011  Score=65.89  Aligned_cols=100  Identities=22%  Similarity=0.216  Sum_probs=62.0

Q ss_pred             CCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceee--CCCccccc
Q 047959          302 PPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTM--GAGAMPKL  379 (478)
Q Consensus       302 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~--~~~~~~~L  379 (478)
                      +.+.++|+..+|.+.+  ......++.|++|.|+-|+++...+    +..|.+|++|+|.. +.+.++..  ...++|+|
T Consensus        18 l~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIssL~p----l~rCtrLkElYLRk-N~I~sldEL~YLknlpsL   90 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISSLAP----LQRCTRLKELYLRK-NCIESLDELEYLKNLPSL   90 (388)
T ss_pred             HHHhhhhcccCCCccH--HHHHHhcccceeEEeeccccccchh----HHHHHHHHHHHHHh-cccccHHHHHHHhcCchh
Confidence            4456667777776532  3445667777777777777665443    45577777777766 34444322  23567788


Q ss_pred             ceeEEecCCCCCCCcc-----ccCCCCCCCEEEE
Q 047959          380 ESLILNPCAYLRKLPE-----EQWCIKSLCKLEL  408 (478)
Q Consensus       380 ~~L~l~~c~~l~~lp~-----~l~~l~~L~~L~l  408 (478)
                      +.|.|..||....-+.     .+.-+|+|+.|+=
T Consensus        91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             hhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence            8888877776654433     3445777777753

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.86  E-value=0.018  Score=46.80  Aligned_cols=103  Identities=14%  Similarity=0.160  Sum_probs=47.9

Q ss_pred             cccCCCCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccchh-hhcccc
Q 047959          128 NFCKKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPED-IWMMQK  204 (478)
Q Consensus       128 ~~~~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~  204 (478)
                      ..|..+..|+.+.+.. .+..++.. +.++.+|+.+.+..+ +..++. .+..+.+|+.+.+.. .+..++.. +..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            4566677777777764 45555544 667777888877664 655553 355666777777755 45455433 344777


Q ss_pred             CcEEEeeCCCCCCCCCCCCCCCCCCcEeCcc
Q 047959          205 LMHLNFGSITLPAPPKNNSSPLKNLIFISAL  235 (478)
Q Consensus       205 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  235 (478)
                      |+.+.+..+ ....-...+.++ +|+.+.+.
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            777777322 221122234444 55555543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.80  E-value=0.0036  Score=33.34  Aligned_cols=16  Identities=44%  Similarity=0.723  Sum_probs=6.4

Q ss_pred             CceEeecCCCCCccch
Q 047959          159 LKYLKLNIPSLKCLPS  174 (478)
Q Consensus       159 L~~L~l~~~~i~~lp~  174 (478)
                      |++|++++|.++.+|+
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            3344444444434333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.47  E-value=0.0044  Score=33.00  Aligned_cols=21  Identities=19%  Similarity=0.351  Sum_probs=15.9

Q ss_pred             CCcEEeCCCCcCcccchhhhc
Q 047959          181 NLQTLEMPSSYIDHSPEDIWM  201 (478)
Q Consensus       181 ~L~~L~l~~~~l~~lp~~i~~  201 (478)
                      +|++||+++|++..+|+++++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            478888888887788876554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.42  E-value=0.0023  Score=55.01  Aligned_cols=64  Identities=22%  Similarity=0.315  Sum_probs=42.6

Q ss_pred             CCCCcccceeEEecCCCCCcee--eCCCcccccceeEEecCCCCCCCc-cccCCCCCCCEEEEecCc
Q 047959          349 CSSFPQLKILHLKSMLWLEEWT--MGAGAMPKLESLILNPCAYLRKLP-EEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       349 ~~~~~~L~~L~L~~~~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~  412 (478)
                      +..+++++.|.+.+|..+..+.  ...+-.|+|+.|+|++|+.+++-. ..+..+++|+.|.+.+-+
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            4556667777777777666442  222456788888888888776532 355677888888887765

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.06  E-value=0.032  Score=27.53  Aligned_cols=15  Identities=33%  Similarity=0.381  Sum_probs=5.5

Q ss_pred             CCceEeecCCCCCcc
Q 047959          158 YLKYLKLNIPSLKCL  172 (478)
Q Consensus       158 ~L~~L~l~~~~i~~l  172 (478)
                      +|+.|++++|+++++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            344444444444443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.01  E-value=0.039  Score=27.19  Aligned_cols=16  Identities=31%  Similarity=0.621  Sum_probs=6.5

Q ss_pred             CCcEEeCCCCcCcccc
Q 047959          181 NLQTLEMPSSYIDHSP  196 (478)
Q Consensus       181 ~L~~L~l~~~~l~~lp  196 (478)
                      +|++|++++|++.++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555555443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.15  E-value=0.0052  Score=52.87  Aligned_cols=88  Identities=17%  Similarity=0.237  Sum_probs=64.6

Q ss_pred             CCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccC-ceeEEeCCCCCcccceeEEecCCCCCcee-eCCCcccccc
Q 047959          303 PSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLE-RKLACVGCSSFPQLKILHLKSMLWLEEWT-MGAGAMPKLE  380 (478)
Q Consensus       303 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~~~~L~  380 (478)
                      -.++.++-+++.+....+..+..++.++.|.+.+|..-+ ..+... .+.+++|+.|+|++|+.+++-. .....+++|+
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHh-cccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            356777888888777778888899999999999877543 333332 3467999999999999988432 2346789999


Q ss_pred             eeEEecCCCCC
Q 047959          381 SLILNPCAYLR  391 (478)
Q Consensus       381 ~L~l~~c~~l~  391 (478)
                      .|.+.+-+...
T Consensus       180 ~L~l~~l~~v~  190 (221)
T KOG3864|consen  180 RLHLYDLPYVA  190 (221)
T ss_pred             HHHhcCchhhh
Confidence            99998755443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.73  E-value=0.26  Score=39.83  Aligned_cols=82  Identities=20%  Similarity=0.262  Sum_probs=49.9

Q ss_pred             CccccCCCCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccch-hhhcc
Q 047959          126 CENFCKKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPE-DIWMM  202 (478)
Q Consensus       126 ~~~~~~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~i~~l  202 (478)
                      ....|..++.|+.+.+.++ +..++.. +.+++.|+.+.+.. .+..++. .+..+.+|+.+++..+ +..++. .+.++
T Consensus        27 ~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~  103 (129)
T PF13306_consen   27 GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC  103 (129)
T ss_dssp             -TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT-
T ss_pred             Chhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC
Confidence            3556788888999999885 7666655 77888899999976 5665554 3556899999999765 666654 34555


Q ss_pred             ccCcEEEee
Q 047959          203 QKLMHLNFG  211 (478)
Q Consensus       203 ~~L~~L~l~  211 (478)
                       +|+.+.+.
T Consensus       104 -~l~~i~~~  111 (129)
T PF13306_consen  104 -NLKEINIP  111 (129)
T ss_dssp             -T--EEE-T
T ss_pred             -CceEEEEC
Confidence             88888883

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.68  E-value=0.0032  Score=55.28  Aligned_cols=80  Identities=19%  Similarity=0.103  Sum_probs=50.7

Q ss_pred             CCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEee
Q 047959          132 KFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFG  211 (478)
Q Consensus       132 ~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~  211 (478)
                      .++..++||++.+.+..+-..++-+..|..|+++.+.+..+|.+++.+..+..+++..|+....|.+.++.+++++++.-
T Consensus        40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence            34556667776666665555566666666666666666666666666666666666666666666666666666666653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.65  E-value=0.2  Score=27.72  Aligned_cols=20  Identities=20%  Similarity=0.406  Sum_probs=11.7

Q ss_pred             CCCcEEeCCCCcCcccchhh
Q 047959          180 LNLQTLEMPSSYIDHSPEDI  199 (478)
Q Consensus       180 ~~L~~L~l~~~~l~~lp~~i  199 (478)
                      .+|++|++++|.+..+|.+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45666666666666665543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.65  E-value=0.2  Score=27.72  Aligned_cols=20  Identities=20%  Similarity=0.406  Sum_probs=11.7

Q ss_pred             CCCcEEeCCCCcCcccchhh
Q 047959          180 LNLQTLEMPSSYIDHSPEDI  199 (478)
Q Consensus       180 ~~L~~L~l~~~~l~~lp~~i  199 (478)
                      .+|++|++++|.+..+|.+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45666666666666665543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.74  E-value=0.01  Score=52.18  Aligned_cols=84  Identities=12%  Similarity=0.061  Sum_probs=67.4

Q ss_pred             CCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEe
Q 047959          153 LENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFI  232 (478)
Q Consensus       153 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  232 (478)
                      +.....-+.|+++.+++..+-..+..+..|..|+++.+.+..+|.+++++..+++++. ++......|..++..+.++.+
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~-~~n~~~~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAAS-HKNNHSQQPKSQKKEPHPKKN  116 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHh-hccchhhCCccccccCCcchh
Confidence            6677888899999988887777788888899999999999999999999999999988 444445677777777777776


Q ss_pred             CcccC
Q 047959          233 SALHP  237 (478)
Q Consensus       233 ~l~~~  237 (478)
                      +...+
T Consensus       117 e~k~~  121 (326)
T KOG0473|consen  117 EQKKT  121 (326)
T ss_pred             hhccC
Confidence            65544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.56  E-value=0.32  Score=26.84  Aligned_cols=21  Identities=33%  Similarity=0.308  Sum_probs=15.8

Q ss_pred             CCCCceEeecCCCCCccchhh
Q 047959          156 LFYLKYLKLNIPSLKCLPSLL  176 (478)
Q Consensus       156 l~~L~~L~l~~~~i~~lp~~~  176 (478)
                      +++|++|++++|.++.+|..+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            357788888888888887654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.56  E-value=0.32  Score=26.84  Aligned_cols=21  Identities=33%  Similarity=0.308  Sum_probs=15.8

Q ss_pred             CCCCceEeecCCCCCccchhh
Q 047959          156 LFYLKYLKLNIPSLKCLPSLL  176 (478)
Q Consensus       156 l~~L~~L~l~~~~i~~lp~~~  176 (478)
                      +++|++|++++|.++.+|..+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            357788888888888887654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=87.41  E-value=0.0023  Score=64.15  Aligned_cols=175  Identities=23%  Similarity=0.182  Sum_probs=80.6

Q ss_pred             EeEEEecCCCCC-----cCCccCCCCCCCceEeecCCCCC-----ccchhhhCC-CCCcEEeCCCCcCc-----ccchhh
Q 047959          136 LRVLNLGSAVLD-----QYPPGLENLFYLKYLKLNIPSLK-----CLPSLLCTL-LNLQTLEMPSSYID-----HSPEDI  199 (478)
Q Consensus       136 L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l-~~L~~L~l~~~~l~-----~lp~~i  199 (478)
                      +..|.|.+|.+.     .+-..+....+|..|++++|.+.     .+-..+... ..|++|++..|.+.     .+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            555666666544     22233444556666666666554     111111121 34555666555442     223444


Q ss_pred             hccccCcEEEeeCCCCCC----CCCCCC----CCCCCCcEeCcccCC------CCCccccCCCCC-CcEEEEEecC--Cc
Q 047959          200 WMMQKLMHLNFGSITLPA----PPKNNS----SPLKNLIFISALHPS------SCTPDILGRLPN-VQTLRISGDL--SY  262 (478)
Q Consensus       200 ~~l~~L~~L~l~~~~~~~----~~~~~~----~~l~~L~~L~l~~~~------~~~~~~l~~l~~-L~~L~l~~~~--~~  262 (478)
                      .....++.++++.|.+..    .++..+    ....++++|++..|.      ......+...+. +..|++..|.  +.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            455566666664443321    111122    234556666666654      111122344444 4456666553  11


Q ss_pred             chhhHHHhccCC-CCCCEEEEEecCccc-----ccCccccccccCCCCceEEEEEeecC
Q 047959          263 YHSGVSKSLCQL-HKLECLKLVNEGKMR-----QLSRMILSEYKFPPSLTQLSLSNTEL  315 (478)
Q Consensus       263 ~~~~l~~~l~~~-~~L~~L~l~~~~~l~-----~~p~~~~~~~~~~~~L~~L~l~~~~~  315 (478)
                      ....+...+..+ ..++.++++. +.++     .+..   .+.. ++.++.+.+++|.+
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~-nsi~~~~~~~L~~---~l~~-~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSR-NSITEKGVRDLAE---VLVS-CRQLEELSLSNNPL  302 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhc-CCccccchHHHHH---HHhh-hHHHHHhhcccCcc
Confidence            233344444444 5556666665 3332     1222   2333 55666666666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	478
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-12
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	9e-12
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	9e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 53/312 (16%), Positives = 102/312 (32%), Gaps = 57/312 (18%)

Query: 127 ENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLL--CTLLNLQT 184
             +       +                 N    +       +LK    LL   T      
Sbjct: 26  RPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVA 85

Query: 185 LEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDI 244
           LE+ S  +   P+  + +  L H+             +++ L  L            PD 
Sbjct: 86  LELRSVPLPQFPDQAFRLSHLQHMTI-----------DAAGLMEL------------PDT 122

Query: 245 LGRLPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL-----SRMILSE 298
           + +   ++TL ++   L      +  S+  L++L  L +    ++ +L     S     E
Sbjct: 123 MQQFAGLETLTLARNPLR----ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 299 YKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLE-----------RKLACV 347
           ++   +L  L L  T +   P  ++  L +L+ LK++ +                +L   
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237

Query: 348 GCSSF----------PQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQ 397
           GC++             LK L LK    L    +    + +LE L L  C  L +LP   
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

Query: 398 WCIKSLCKLELH 409
             + + C + + 
Sbjct: 298 AQLPANCIILVP 309

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.1 bits (162), Expect = 4e-12
 Identities = 52/301 (17%), Positives = 101/301 (33%), Gaps = 42/301 (13%)

Query: 121 LALIHCENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLC--- 177
           L              L                          ++   + + L +      
Sbjct: 17  LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLE 76

Query: 178 --TLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISAL 235
             T      LE+ S  +   P+  + +  L H+             +++ L  L      
Sbjct: 77  DATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTI-----------DAAGLMEL------ 119

Query: 236 HPSSCTPDILGRLPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL--- 291
                 PD + +   ++TL ++   L      +  S+  L++L  L +    ++ +L   
Sbjct: 120 ------PDTMQQFAGLETLTLARNPL----RALPASIASLNRLRELSIRACPELTELPEP 169

Query: 292 --SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGC 349
             S     E++   +L  L L  T +   P  ++  L +L+ LK++ +  L      +  
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSP-LSALGPAIH- 226

Query: 350 SSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELH 409
              P+L+ L L+    L  +    G    L+ LIL  C+ L  LP +   +  L KL+L 
Sbjct: 227 -HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285

Query: 410 W 410
            
Sbjct: 286 G 286

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 66.2 bits (161), Expect = 9e-12
 Identities = 19/134 (14%), Positives = 41/134 (30%), Gaps = 16/134 (11%)

Query: 5   FSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYN--SEETAKHYLKELIH 62
             V  L    +    +    PP ++I  +    +   +         ++     LK L  
Sbjct: 380 RCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSK 439

Query: 63  RGFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEFVSSIFSEEESLSNVKRSKSDHLA 122
           RG +   KR    T K  ++       + +  +          + ++++N        L 
Sbjct: 440 RGALLSGKRMPVLTFKIDHI-------IHMFLKHV-------VDAQTIANGISILEQRLL 485

Query: 123 LIHCENFCKKFKHL 136
            I   N     +H+
Sbjct: 486 EIGNNNVSVPERHI 499

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 66.0 bits (161), Expect = 9e-12
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 10/77 (12%)

Query: 6   SVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGF 65
           SV  L   +K     L      +++ T+ L  LW  E        E  +  L+E +++  
Sbjct: 371 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSL 423

Query: 66  IQVSKRRSGGTIKACYV 82
           +   +    G     Y+
Sbjct: 424 LFCDRN---GKSFRYYL 437

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 3e-10
 Identities = 46/257 (17%), Positives = 91/257 (35%), Gaps = 44/257 (17%)

Query: 1   WRQIF-----SVMEL------PFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNS 49
           W+ +      +++E       P   +     L  FPPS  I T  L  +W          
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV------I 400

Query: 50  EETAKHYLKELIHRGFIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEFVSSIFSEEES 109
           +      + +L     ++  K+    TI    +PSI       +  +     SI    + 
Sbjct: 401 KSDVMVVVNKLHKYSLVE--KQPKESTI---SIPSIYLELKVKLENEYALHRSIV---DH 452

Query: 110 LSNVKRSKSDHLALIHCENFCKKFKHLRVLNLGSAVLDQYPPGLENLFY-LKYLKLNI-- 166
            +  K   SD L   + + +   + H+   +L +    +       +F   ++L+  I  
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYF--YSHI-GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509

Query: 167 --PSLKCLPSLLCTLLNLQTLEMPSSYI-DHSPEDIWMMQKLMHLNFGSITLPAPPKN-N 222
              +     S+L TL  L+  +    YI D+ P+   ++  ++   F    LP   +N  
Sbjct: 510 DSTAWNASGSILNTLQQLKFYK---PYICDNDPKYERLVNAILD--F----LPKIEENLI 560

Query: 223 SSPLKNLIFISALHPSS 239
            S   +L+ I+ +    
Sbjct: 561 CSKYTDLLRIALMAEDE 577

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 67/436 (15%), Positives = 127/436 (29%), Gaps = 129/436 (29%)

Query: 45  IPYNSEETAKHYLKELIHRGFIQVSKR--------RSGGTIKA----C------------ 80
           I        +  L+ L+     +  +         ++     A    C            
Sbjct: 223 IKLRIHS-IQAELRRLLKS---KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278

Query: 81  -YVPSIAYTSLALMARKTEFVSSIFSEEESLS------NVKRSKSDHLALIHCENFCKKF 133
            ++ +   T ++L     +  S   + +E  S      + +        L          
Sbjct: 279 DFLSAATTTHISL-----DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-------- 325

Query: 134 KHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYID 193
            + R L++ +  +       +N  ++   KL       L         L+  E    +  
Sbjct: 326 -NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN-------VLEPAEYRKMFDR 377

Query: 194 HS--PEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNV 251
            S  P    +   L+     S+      K++       + ++ LH  S     + + P  
Sbjct: 378 LSVFPPSAHIPTILL-----SLIWFDVIKSDVM-----VVVNKLHKYSL----VEKQPKE 423

Query: 252 QTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFP-------PS 304
            T+ I        S        ++    +KL NE     L R I+  Y  P         
Sbjct: 424 STISI-------PS--------IYLELKVKLENE---YALHRSIVDHYNIPKTFDSDDLI 465

Query: 305 LTQLS----------LSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQ 354
              L           L N E  E     +     +  L  +   +LE+K+     +    
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPER----MTLFRMV-FLDFR---FLEQKIRHDSTAWNAS 517

Query: 355 LKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPE-EQWCIKS----LCKLELH 409
             IL+    L   +  +     PK E L+    A L  LP+ E+  I S    L ++ L 
Sbjct: 518 GSILNTLQQLKFYKPYI-CDNDPKYERLV---NAILDFLPKIEENLICSKYTDLLRIALM 573

Query: 410 WPQPEL-----RQLLR 420
                +     +Q+ R
Sbjct: 574 AEDEAIFEEAHKQVQR 589

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 53/326 (16%), Positives = 116/326 (35%), Gaps = 38/326 (11%)

Query: 100 VSSIFSEEESLSNVKRSKSDHLALIHCENFCKKFKHLRVLNLGSAVLDQYPPG-LENLFY 158
           V+S+F    +L  ++    +  + I   +F      L  L + +  L  Y    L+++  
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDF-AGLTSLNELEIKALSLRNYQSQSLKSIRD 173

Query: 159 LKYLKLNIPSLKCLPSLLCTLL-NLQTLEMPSSYIDHSPEDIW----MMQKLMHLNFGSI 213
           + +L L++     L  +   +L +++ LE+  + +            +   +  L F   
Sbjct: 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233

Query: 214 TLPAPPKNNSSPLKNLIF-ISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLC 272
            L     N    L   I  +S +    CT + LG     +               S  + 
Sbjct: 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE---------------SDVVS 278

Query: 273 QLHKLECLKL----VNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPH 328
           +L K+E + +    + +  +      + S       + ++++ N+++   P    + L  
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLL---EKVKRITVENSKVFLVPCSFSQHLKS 335

Query: 329 LEVLKLKQNSYLERKLA-CVGCSSFPQLKILHLK----SMLWLEEWTMGAGAMPKLESLI 383
           LE L L +N  +E  L       ++P L+ L L       +      +    +  L SL 
Sbjct: 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL--LTLKNLTSLD 393

Query: 384 LNPCAYLRKLPEEQWCIKSLCKLELH 409
           ++       +P+     + +  L L 
Sbjct: 394 ISRN-TFHPMPDSCQWPEKMRFLNLS 418

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 41/227 (18%), Positives = 75/227 (33%), Gaps = 45/227 (19%)

Query: 120 HLALIHCENFCKKFKHLRVLNLG----SAVLDQYPPGLENLFYLKYLKL---NIPSLKCL 172
            + L+ C +F +  K L  L+L          +          L+ L L   ++ S++  
Sbjct: 321 KVFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379

Query: 173 PSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFI 232
             +L TL NL +L++  +     P+     +K+  LN  S  +          L+ L   
Sbjct: 380 GEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLD-- 437

Query: 233 SALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLS 292
             +  ++        LP +Q L IS               +L  L               
Sbjct: 438 --VSNNNLD-SFSLFLPRLQELYISR-------------NKLKTL--------------- 466

Query: 293 RMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSY 339
                +    P L  + +S  +L   P    + L  L+ + L  N +
Sbjct: 467 ----PDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 61/290 (21%), Positives = 109/290 (37%), Gaps = 31/290 (10%)

Query: 120 HLALIHCENFCKKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPS-LLC 177
            +  ++ + F   F HL  L L   ++    PG   NLF L+ L L    LK +P  +  
Sbjct: 43  RIKTLNQDEF-ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101

Query: 178 TLLNLQTLEMPSSYIDHSPEDIWM-MQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALH 236
            L NL  L++  + I    + ++  +  L  L  G   L        S L +L     L 
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL---EQLT 158

Query: 237 PSSCT-----PDILGRLPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ 290
              C       + L  L  +  LR+   +++        S  +L++L+ L++ +   +  
Sbjct: 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY---SFKRLYRLKVLEISHWPYLDT 215

Query: 291 LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCS 350
           ++   L       +LT LS+++  L   P   +  L +L  L L  N      ++ +  S
Sbjct: 216 MTPNCLY----GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-----PISTIEGS 266

Query: 351 SF---PQLKILHLKSMLWLEEWTMGA-GAMPKLESLILNPCAYLRKLPEE 396
                 +L+ + L     L      A   +  L  L ++    L  L E 
Sbjct: 267 MLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEES 314

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 41/246 (16%)

Query: 135 HLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYI 192
           +L+ L +G   L          L  L+ L L   +L  +P+  L  L  L  L +    I
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 193 DHSPEDIWM-MQKLMHLNFGS---ITLPAPPKNNSSPLKNLIF----ISALHPSSCTPDI 244
           +   +  +  + +L  L       +    P       L +L      ++A+         
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY-----LA 243

Query: 245 LGRLPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPP 303
           +  L  ++ L +S   +S         L +L +L+ ++LV  G++  +            
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGS---MLHELLRLQEIQLVG-GQLAVVEPYAFRGL---N 296

Query: 304 SLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSM 363
            L  L++S  +L          + +LE L L  N      LAC  C             +
Sbjct: 297 YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP-----LAC-DC------------RL 338

Query: 364 LWLEEW 369
           LW+   
Sbjct: 339 LWVFRR 344

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 31/179 (17%), Positives = 67/179 (37%), Gaps = 24/179 (13%)

Query: 238 SSCTPDILGRLPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMIL 296
            +   D     P+++ L ++   +S    G   +   L  L  L L    +++ +   + 
Sbjct: 45  KTLNQDEFASFPHLEELELNENIVSAVEPG---AFNNLFNLRTLGL-RSNRLKLIPLGVF 100

Query: 297 SEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSF---P 353
           +      +LT+L +S  ++V       ++L +L+ L++  N      L  +   +F    
Sbjct: 101 TG---LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-----DLVYISHRAFSGLN 152

Query: 354 QLKILHLKSMLWLEEWTMGA-GAMPKLESLIL--NPCAYLRKLPEEQW-CIKSLCKLEL 408
            L+ L L+    L      A   +  L  L L       +  + +  +  +  L  LE+
Sbjct: 153 SLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLN---INAIRDYSFKRLYRLKVLEI 207

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 51/262 (19%), Positives = 94/262 (35%), Gaps = 19/262 (7%)

Query: 135 HLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYID 193
            +  +NL                  L+ L L    L  LPS L  L  L+ L + ++  +
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFE 314

Query: 194 HSPEDIWM-MQKLMHLNFGSITLPAPPKNNS-SPLKNLIFIS----ALHPSSCTPDILGR 247
           +  +        L HL+    T            L+NL  +      +  S C    L  
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 248 LPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMI-LSEYKFPPSL 305
           L ++Q+L +S  +     +    +  +  +LE L L       +L      S ++    L
Sbjct: 375 LSHLQSLNLSYNEPLSLKTE---AFKECPQLELLDLAFT----RLKVKDAQSPFQNLHLL 427

Query: 306 TQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGC-SSFPQLKILHLKSML 364
             L+LS++ L        + LP L+ L L+ N + +  +       +  +L+IL L    
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 365 WLEEWTMGA-GAMPKLESLILN 385
            L      A  ++  +  + L+
Sbjct: 488 -LSSIDQHAFTSLKMMNHVDLS 508

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 42/247 (17%), Positives = 73/247 (29%), Gaps = 35/247 (14%)

Query: 132 KFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKL--NIPSLKCLPSLLCTLLNLQTLEMP 188
               L+ L L +   +        N   L +L +  N   L+     L  L NL+ L++ 
Sbjct: 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358

Query: 189 S---SYIDHSPEDIWMMQKLMHLNFGS---ITLPAPPKNNSSPLKNLIF----ISALHPS 238
                  D     +  +  L  LN      ++L          L+ L      +      
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418

Query: 239 SCTPDILGRLPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECLKL-VNEGKMRQLSRMIL 296
           S        L  ++ L +S   L      +      L  L+ L L  N        +  +
Sbjct: 419 S----PFQNLHLLKVLNLSHSLLDISSEQL---FDGLPALQHLNLQGN-----HFPKGNI 466

Query: 297 SEY---KFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFP 353
            +    +    L  L LS  +L          L  +  + L  N     +L      +  
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-----RLTSSSIEALS 521

Query: 354 QLKILHL 360
            LK ++L
Sbjct: 522 HLKGIYL 528

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 40/239 (16%), Positives = 74/239 (30%), Gaps = 22/239 (9%)

Query: 134 KHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSY 191
           K L  L LGS  +             LK L     ++  L    + +L     L +  + 
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 192 --IDHSPEDIWMMQKLMHLNFGS--ITLPAPPKNNSSPLKNLIFISALH-----PSSCTP 242
             I       +       LNFG     L       +S +++L   +         S    
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

Query: 243 DILGRLPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKF 301
           + L  + +V+++ +         S    +      L+ L L     + +L   ++     
Sbjct: 249 EGLCEM-SVESINLQKHYFFNISSN---TFHCFSGLQELDLTA-THLSELPSGLVG---- 299

Query: 302 PPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHL 360
             +L +L LS  +       +    P L  L +K N+            +   L+ L L
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC-LENLENLRELDL 357

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 31/174 (17%), Positives = 54/174 (31%), Gaps = 17/174 (9%)

Query: 242 PDILGRLPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYK 300
            D       + TL ++   L +       +L     L+ L  +       +S +      
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAET---ALSGPKALKHLFFIQ----TGISSIDFIPLH 126

Query: 301 FPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQN--SYLERKLACVGCSSFPQLKIL 358
              +L  L L +  +    +P       L+VL  + N   YL ++      SS  Q   L
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED----MSSLQQATNL 182

Query: 359 HLK-SMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEE--QWCIKSLCKLELH 409
            L  +   +     GA      +SL       L  + +      I+SL      
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 28/212 (13%), Positives = 68/212 (32%), Gaps = 15/212 (7%)

Query: 134 KHLRVLNLGSAVLDQYPPGLENLFYLKYLKLN-IPSLKCLPSLLCTLLNLQTLEMPSSYI 192
           K    ++     +D  P   E+   L    +N  P  K +       L    +   S+ I
Sbjct: 138 KQKMRMHYQKTFVDYDP--REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 193 DHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQ 252
               + +  + KL     G+    A     +   +N  +                L ++ 
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE---DLKWDNLKDLT 252

Query: 253 TLRISGDLSYYHSG-VSKSLCQLHKLECLKLVN----EGKMRQLSRMILSEYKFPPSLTQ 307
            + +    +  +   +   L  L +++ + +       G+  +     L++      +  
Sbjct: 253 DVEVY---NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 308 LSLSNTELVEDPMPT-LEELPHLEVLKLKQNS 338
           + +    L   P+ T L+++  L +L+   N 
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 31/256 (12%), Positives = 76/256 (29%), Gaps = 49/256 (19%)

Query: 127 ENFCKKFKHLRVLNLGSAVLDQYPPGLE--NLFYLKYLKLN--------IPSLKCLPSLL 176
            NFC   + +  L+     L   P   +  ++  +  +  +          +   L    
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 177 CTLLNLQTLEMPSSYIDHSP-EDIWMMQKLMHLNFGS---ITLPAPPKNNSSP-LKNLIF 231
              +N+ ++ + ++ I   P E       L  +N        +P     + +   KN   
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 232 ISALHPSSC-----TPDI-LGRLPNVQTLRISGDLSYYH-SGVSKSLCQLHKLECLKLVN 284
           ++++          + D     LP +  +    DLSY   S           L+   + N
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGI----DLSYNSFSKFPTQPLNSSTLKGFGIRN 545

Query: 285 E----------------GKMRQLSRMILSE-------YKFPPSLTQLSLSNTELVEDPMP 321
           +                     L+++ +          K  P+++ L + +   +   + 
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNISIDLS 605

Query: 322 TLEELPHLEVLKLKQN 337
            +       +  L  +
Sbjct: 606 YVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 39/349 (11%), Positives = 100/349 (28%), Gaps = 79/349 (22%)

Query: 132 KFKHLRVLNLGSAVL-DQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPS- 189
           +   LR   +G++    +           +Y +      K        L +L  +E+ + 
Sbjct: 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ----YKTEDLKWDNLKDLTDVEVYNC 259

Query: 190 SYIDHSPEDIWMMQKLMHLNFGS---ITLPAPPKNNSSP-----LKNLIFISALH---PS 238
             +   P  +  + ++  +N      I+      +  +       + +  I   +    +
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319

Query: 239 SCTPDILGRLPNVQTLRISG-------------------DLSYYH-SGVSKSLCQ-LHKL 277
                 L ++  +  L                       +L+Y   + +  + C    ++
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQV 379

Query: 278 ECLKLVN-----------EGKMRQLSRMILSE-----------YKFPP------SLTQLS 309
           E L   +              +  +S +  S                P      +++ ++
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 310 LSNTELVEDPMPTLEELPHLEVLKLKQN--SYLERKLACVGCSSFPQLKILHLKSMLWLE 367
           LSN ++ + P         L  + L  N  + + +        +F    +L   + + L 
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL---TSIDLR 496

Query: 368 E-------WTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELH 409
                       A  +P L  + L+  +   K P +     +L    + 
Sbjct: 497 FNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIR 544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 44/230 (19%), Positives = 82/230 (35%), Gaps = 35/230 (15%)

Query: 133 FKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYI 192
             ++  ++L    + +Y   +   F  + L +    LK  P+L   L  L++L +  +  
Sbjct: 284 LANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKG 340

Query: 193 DHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQ 252
             S      +  L +L+            N+        +S     S +        +++
Sbjct: 341 SISF-KKVALPSLSYLDLS---------RNA--------LSFSGCCSYS---DLGTNSLR 379

Query: 253 TLRISGDLSY-YHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMI-LSEYKFPPSLTQLSL 310
            L    DLS+     +S +   L +L+ L   +      L R+   S +     L  L +
Sbjct: 380 HL----DLSFNGAIIMSANFMGLEELQHLDFQHS----TLKRVTEFSAFLSLEKLLYLDI 431

Query: 311 SNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHL 360
           S T    D       L  L  LK+  NS+ +  L+ V  ++   L  L L
Sbjct: 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-FANTTNLTFLDL 480

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 42/231 (18%), Positives = 76/231 (32%), Gaps = 28/231 (12%)

Query: 133 FKHLRVLNLGSAVLDQYPPGLENLFYLKYLKL---NIPSLKCLPSLLCTLLNLQTLEMPS 189
              L+ L L              L  L YL L    +    C         +L+ L++  
Sbjct: 327 LPFLKSLTLTMNKGSI-SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385

Query: 190 SYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNS-SPLKNLIF--ISALHPSSCTPDILG 246
           +       +   +++L HL+F   TL    + ++   L+ L++  IS  +       I  
Sbjct: 386 NGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445

Query: 247 RLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKL-------VNEGKMRQLSRM----- 294
            L ++ TL+++G+ S+  + +S        L  L L       ++ G    L R+     
Sbjct: 446 GLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504

Query: 295 ------ILSEYKFP--PSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQN 337
                  L    +    SL+ L  S   +             L    L  N
Sbjct: 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 40/241 (16%), Positives = 83/241 (34%), Gaps = 15/241 (6%)

Query: 134 KHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSY 191
            HL  L L    +  + PG    L  L+ L      L  L S  +  L+ L+ L +  ++
Sbjct: 80  HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139

Query: 192 IDH--SPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFIS-ALHPS----SCTPDI 244
           I     P     +  L+H++     +     N+   L+    ++ +L  S        D 
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ 199

Query: 245 LGRLPNVQTLRISG--DLSYYHSGVSKSLCQLHKLECL--KLVNEGKMRQLSRMILSEYK 300
             +   +  L + G  + S       ++L  LH    +  +  +E  +      I+    
Sbjct: 200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259

Query: 301 FPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHL 360
              ++ +  L+ T    D +     L ++  + L   S ++          +  L I+  
Sbjct: 260 DV-TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRC 317

Query: 361 K 361
           +
Sbjct: 318 Q 318

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 29/163 (17%), Positives = 47/163 (28%), Gaps = 23/163 (14%)

Query: 205 LMHLNFGSITLPAPPKNNSSPLKNLIF----ISALHPSSCTPDILGRLPNVQTLRISG-D 259
            M      +     P +  S  KN+      +  L   S           +Q L +S  +
Sbjct: 18  CMDQKLSKV-----PDDIPSSTKNIDLSFNPLKILKSYS-----FSNFSELQWLDLSRCE 67

Query: 260 LSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDP 319
           +         +   LH L  L L        +       +    SL  L    T+L    
Sbjct: 68  IETIEDK---AWHGLHHLSNLILTG----NPIQSFSPGSFSGLTSLENLVAVETKLASLE 120

Query: 320 MPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKS 362
              + +L  L+ L +  N     KL     S+   L  + L  
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSY 162

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 49/243 (20%), Positives = 83/243 (34%), Gaps = 24/243 (9%)

Query: 128 NFCKKFKHLRVLNLGSAVLDQYPPGLENLF----YLKYLKLNIPSLKCLPSLLCTLLNLQ 183
           +  +   +L +     A LD Y   + +LF     +    L   +++ +          Q
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF-SYNFGWQ 307

Query: 184 TLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFIS----ALHPSS 239
            LE+              ++ L  L F S         +   L +L F+      L    
Sbjct: 308 HLEL--VNCKFGQFPTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKG 363

Query: 240 CTPDILGRLPNVQTLRISGDLSY-YHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMI-LS 297
           C         +++ L    DLS+     +S +   L +LE L   +      L +M   S
Sbjct: 364 CCSQSDFGTTSLKYL----DLSFNGVITMSSNFLGLEQLEHLDFQH----SNLKQMSEFS 415

Query: 298 EYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKI 357
            +    +L  L +S+T            L  LEVLK+  NS+ E  L  +  +    L  
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF-TELRNLTF 474

Query: 358 LHL 360
           L L
Sbjct: 475 LDL 477

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 45/260 (17%), Positives = 89/260 (34%), Gaps = 28/260 (10%)

Query: 126 CENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKL---NIPSLKCLPSLLCTLLNL 182
                K  K L   +              +L  L++L L    +    C         +L
Sbjct: 320 PTLKLKSLKRLTFTSN----KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 183 QTLEMPSSYIDHSPEDIWMMQKLMHLNFGS--ITLPAPPKNNSSPLKNLIF--ISALHPS 238
           + L++  + +     +   +++L HL+F    +   +   +    L+NLI+  IS  H  
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTR 434

Query: 239 SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKL-VNEGKMRQLSRMILS 297
                I   L +++ L+++G+ S+  + +     +L  L  L L        QL ++  +
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-----QLEQLSPT 488

Query: 298 EYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKI 357
            +    SL  L++S+           + L  L+VL    N  +              L  
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAF 547

Query: 358 LHLK--------SMLWLEEW 369
           L+L               +W
Sbjct: 548 LNLTQNDFACTCEHQSFLQW 567

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 37/164 (22%), Positives = 54/164 (32%), Gaps = 25/164 (15%)

Query: 205 LMHLNFGSITLPAPPKNNSSPLKNLIF----ISALHPSSCTPDILGRLPNVQTLRISG-D 259
            M LNF  I     P N     KNL      +  L   S         P +Q L +S  +
Sbjct: 14  CMELNFYKI-----PDNLPFSTKNLDLSFNPLRHLGSYS-----FFSFPELQVLDLSRCE 63

Query: 260 LSYYHSGVSKSLCQLHKLECLKLV-NEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVED 318
           +     G   +   L  L  L L  N      +  + L  +    SL +L    T L   
Sbjct: 64  IQTIEDG---AYQSLSHLSTLILTGN-----PIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 319 PMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKS 362
               +  L  L+ L +  N  ++        S+   L+ L L S
Sbjct: 116 ENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSS 158

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 48/285 (16%), Positives = 80/285 (28%), Gaps = 53/285 (18%)

Query: 128 NFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKL--NIPSLKCLPSLLCTLLNLQTL 185
              +       L+L    ++   PG      L  L L  N  SL  + + +  L  L+  
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230

Query: 186 EMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIF----ISALHPS-SC 240
            +                 ++        L    K+    L NL      ++ L      
Sbjct: 231 RL-----------------VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273

Query: 241 TPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVN-------EGKMRQLSR 293
             D+   L NV +      L        K        + L+LVN         K++ L R
Sbjct: 274 IIDLFNCLTNVSSF----SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 329

Query: 294 MILSEYKFP--------PSLTQLSLSNTEL--VEDPMPTLEELPHLEVLKLKQN--SYLE 341
           +  +  K          PSL  L LS   L        +      L+ L L  N    + 
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389

Query: 342 RKLACVGCSSFPQLKILHLKSMLWLEEWTMGA-GAMPKLESLILN 385
                       QL+ L  +     +        ++  L  L ++
Sbjct: 390 S-----NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 29/233 (12%), Positives = 68/233 (29%), Gaps = 20/233 (8%)

Query: 118 SDHLALIHCENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNI---PSLKCLPS 174
           +    L   E         R   +       +    + L     L+  I   P +K +  
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419

Query: 175 LLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFG--SITLPAPPKNNSSPLKNLIFI 232
                L    +   ++ I    + I  + KL  + F     T      +      +    
Sbjct: 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479

Query: 233 SALHPSSCTPDILGRLPNVQTLRISGDLSYYHSG-VSKSLCQLHKLECL-----KLVNEG 286
                 S        L ++  + +    +  +   +   L  L +L+ L     + ++  
Sbjct: 480 YENEELS-----WSNLKDLTDVELY---NCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 287 KMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMP-TLEELPHLEVLKLKQNS 338
           +++     +  +    P +    +    L E P   +L+++  L +L    N 
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.6 bits (121), Expect = 7e-07
 Identities = 41/308 (13%), Positives = 87/308 (28%), Gaps = 42/308 (13%)

Query: 132 KFKHLRVLNLGSA-VLDQYPPGLENLFYLKYLKLN----------IPSLKCLPSLLCTLL 180
             K L  + L +   + Q P  L +L  L+ L +                 L     T  
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 181 NLQTLEMPSSYIDHSPE--DIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS 238
            +Q   M  + ++  P    +  M KL  L+     +              + ++ L   
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-----AFGTNVKLTDLKLD 603

Query: 239 SC-----TPDILGRLPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLS 292
                    D       V+ L  S   L Y  +  +     ++ +  +   +  K+    
Sbjct: 604 YNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN--AKSVYVMGSVDF-SYNKIGSEG 660

Query: 293 RMILSEYKF--PPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQN--SYLERKLACVG 348
           R I          + + ++LS  E+ + P         +  + L  N  + +        
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720

Query: 349 CSSFPQLKILHLKSMLWLEE-------WTMGAGAMPKLESLILNPCAYLRKLPEEQWCIK 401
             ++    +L     + L             A  +P L ++ ++        P +     
Sbjct: 721 DGNYKNTYLLT---TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSS 776

Query: 402 SLCKLELH 409
            L    + 
Sbjct: 777 QLKAFGIR 784

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 25/223 (11%), Positives = 64/223 (28%), Gaps = 47/223 (21%)

Query: 132 KFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLN------IPS--LKCLPSLLCTLLNL 182
           K  +   + L    + ++P         +  + L+      IP   LK           L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 183 QTLEMPSSYIDHSPEDIWM--MQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSC 240
            T+++  + +    +D     +  L +++           N           S+      
Sbjct: 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSY--------NC---------FSSF----- 768

Query: 241 TPDILGRLPNVQTLRISGDLSYYHSGVSK----SLCQLHKLECLKL-VNEGKMRQLSRMI 295
            P        ++   I        + + +     +     L  L++  N      + +  
Sbjct: 769 -PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-----DIRK-- 820

Query: 296 LSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNS 338
           + E K  P L  L +++   +   + ++       +  L  + 
Sbjct: 821 VDE-KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 51/265 (19%), Positives = 87/265 (32%), Gaps = 23/265 (8%)

Query: 105 SEEESLSNVKRSKSDHLALIHCENFCKKFKHLRVLNLGSAVLDQYPPGLENLFY----LK 160
            E   L   +     +L         +   +L +     A LD Y   + +LF     + 
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSAL-EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 161 YLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPK 220
              L   +++ +          Q LE+ +      P     ++ L  L F S        
Sbjct: 286 SFSLVSVTIERVKDFSY-NFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAF- 341

Query: 221 NNSSPLKNLIFIS----ALHPSSCTPDILGRLPNVQTLRISGDLSY-YHSGVSKSLCQLH 275
            +   L +L F+      L    C         +++ L    DLS+     +S +   L 
Sbjct: 342 -SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL----DLSFNGVITMSSNFLGLE 396

Query: 276 KLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLK 335
           +LE L       ++Q+S    S +    +L  L +S+T            L  LEVLK+ 
Sbjct: 397 QLEHLDF-QHSNLKQMSE--FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 336 QNSYLERKLACVGCSSFPQLKILHL 360
            NS  +        +    L  L L
Sbjct: 454 GNS-FQENFLPDIFTELRNLTFLDL 477

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 43/213 (20%), Positives = 87/213 (40%), Gaps = 14/213 (6%)

Query: 132 KFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLN---IPSLKCLPSLLCTLLNLQTLEMP 188
           K K L+ L   ++          +L  L++L L+   +    C         +L+ L++ 
Sbjct: 323 KLKSLKRLTF-TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 189 SSYIDHSPEDIWMMQKLMHLNFGSITLPA-PPKNNSSPLKNLIF--ISALHPSSCTPDIL 245
            + +     +   +++L HL+F    L      +    L+NLI+  IS  H       I 
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 246 GRLPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPS 304
             L +++ L+++G       + +     +L  L  L L ++ ++ QLS    +      S
Sbjct: 442 NGLSSLEVLKMAGNSFQE--NFLPDIFTELRNLTFLDL-SQCQLEQLSPTAFNSL---SS 495

Query: 305 LTQLSLSNTELVEDPMPTLEELPHLEVLKLKQN 337
           L  L++++ +L   P    + L  L+ + L  N
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 37/163 (22%), Positives = 53/163 (32%), Gaps = 23/163 (14%)

Query: 205 LMHLNFGSITLPAPPKNNSSPLKNLIF----ISALHPSSCTPDILGRLPNVQTLRISG-D 259
            M LNF  I     P N     KNL      +  L   S         P +Q L +S  +
Sbjct: 14  CMELNFYKI-----PDNLPFSTKNLDLSFNPLRHLGSYS-----FFSFPELQVLDLSRCE 63

Query: 260 LSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDP 319
           +     G       L  L  L L     ++ L+    S      SL +L    T L    
Sbjct: 64  IQTIEDGA---YQSLSHLSTLIL-TGNPIQSLALGAFS---GLSSLQKLVAVETNLASLE 116

Query: 320 MPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKS 362
              +  L  L+ L +  N  ++        S+   L+ L L S
Sbjct: 117 NFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSS 158

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 55/275 (20%), Positives = 103/275 (37%), Gaps = 38/275 (13%)

Query: 109 SLSNVKRSKSDHLALIHCENFCKKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKL--- 164
           SLSN + S + +   +       K+ +L +L+L    L+         L  L+Y  L   
Sbjct: 228 SLSNSQLSTTSNTTFLGL-----KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282

Query: 165 NIPSLKCLPSLLCTLLNLQTLEMPSSYIDHS----------PEDIWMMQKLMHLNFGSIT 214
           NI  L      L  L N++ L +  S+   S                ++ L HLN     
Sbjct: 283 NIQHL--FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340

Query: 215 LPAPPKNNSSPLKNLIFIS----ALHPSSCTPDILGRLPNV--QTLRISG-DLSYYHSGV 267
           +P    N  + L NL ++S         + T +    L +     L ++   +S   S  
Sbjct: 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD- 399

Query: 268 SKSLCQLHKLECLKLVNEGKMRQLSRMI-LSEYKFPPSLTQLSLSNTELVEDPMPTLEEL 326
             +   L  LE L L       ++ + +   E++   ++ ++ LS  + ++    +   +
Sbjct: 400 --AFSWLGHLEVLDLGL----NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453

Query: 327 PHLEVLKLKQNSYLERKLACVGC-SSFPQLKILHL 360
           P L+ L L++ + L+   +          L IL L
Sbjct: 454 PSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDL 487

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 47/262 (17%), Positives = 79/262 (30%), Gaps = 52/262 (19%)

Query: 131 KKFKHLRVLNLGSAVLDQYPPG--LENLFYLKYLKL---NIPSLKCLPSLLCTLLNLQTL 185
               HL VL+LG   + Q   G     L  +  + L       L    +    + +LQ L
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL--TRNSFALVPSLQRL 459

Query: 186 EMPS---SYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTP 242
            +       +D SP     ++ L  L+  +               N I       ++   
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSN---------------NNI-------ANIND 497

Query: 243 DILGRLPNVQTLRISG------DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMIL 296
           D+L  L  ++ L +               G    L  L  L  L L +         + +
Sbjct: 498 DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN----GFDEIPV 553

Query: 297 SEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLK 356
             +K    L  + L    L   P         L+ L L++N  +      V   +F  L 
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLT 612

Query: 357 ILHL---------KSMLWLEEW 369
            L +         +S+ W   W
Sbjct: 613 ELDMRFNPFDCTCESIAWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 53/284 (18%), Positives = 91/284 (32%), Gaps = 63/284 (22%)

Query: 131 KKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKL------------NIPSLKCLPSLLC 177
                L    L    +       L  LF ++YL L            ++P +        
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID--DFSFQ 326

Query: 178 TLLNLQTLEMPSSYIDHSPEDIWM-MQKLMHLN-------FGSITLPAPPKNNSSPLKNL 229
            L  L+ L M  + I     +++  +  L +L+         ++T         SPL  L
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 230 IF----ISALHPSSCTPDILGRLPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECLKLVN 284
                 IS +   +        L +++ L +   ++    +G  +    L  +  + L  
Sbjct: 387 NLTKNKISKIESDA-----FSWLGHLEVLDLGLNEIGQELTG--QEWRGLENIFEIYLSY 439

Query: 285 ----------EGKMRQLSRMILSE------YKFP------PSLTQLSLSNTELVEDPMPT 322
                        +  L R++L           P       +LT L LSN  +       
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499

Query: 323 LEELPHLEVLKLKQN--SYLERKLACVGCSSF----PQLKILHL 360
           LE L  LE+L L+ N  + L +     G   F      L IL+L
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 48/273 (17%), Positives = 78/273 (28%), Gaps = 47/273 (17%)

Query: 136 LRVLNLGSAVLDQYPPGLENLFYLKYLKL---NIPSLKCLPSLLCTLLNLQTLEMPSSYI 192
             V +     L Q P  L     +  L L    +  L    +       L +L++  + I
Sbjct: 6   HEVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRRLP--AANFTRYSQLTSLDVGFNTI 61

Query: 193 DHSPED-IWMMQKLMHLNFGSITLPAPPKNNSSPLKNLI-------FISALHPSSCTPDI 244
                +    +  L  LN     L        +   NL         I  +  +      
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP----- 116

Query: 245 LGRLPNVQTLRISGDLSY--YHSGVSKSLCQLHKLECLKL-VNEGKMRQLSRMILSEYKF 301
             +  N+ TL    DLS+    S    +  QL  L+ L L  N     ++  +   E   
Sbjct: 117 FVKQKNLITL----DLSHNGLSSTKLGTQVQLENLQELLLSNN-----KIQALKSEELDI 167

Query: 302 --PPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSF------P 353
               SL +L LS+ ++ E        +  L  L L        +L               
Sbjct: 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV-----QLGPSLTEKLCLELANT 222

Query: 354 QLKILHLK--SMLWLEEWTMGAGAMPKLESLIL 384
            ++ L L    +      T        L  L L
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 35/213 (16%)

Query: 205 LMHLNFGSITLPAPPKNNSSPLKNLI----FISALHPSSCTPDILGRLPNVQTLRISG-D 259
             HL    +     P +  + +  L      +  L  ++       R   + +L +    
Sbjct: 11  CSHLKLTQV-----PDDLPTNITVLNLTHNQLRRLPAAN-----FTRYSQLTSLDVGFNT 60

Query: 260 LSYYHSGVSKSLCQLHKLECLKLV-NEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVED 318
           +S           +L  L+ L L  N     +LS++    + F  +LT+L L +  + + 
Sbjct: 61  ISKLEPE---LCQKLPMLKVLNLQHN-----ELSQLSDKTFAFCTNLTELHLMSNSIQKI 112

Query: 319 PMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKS-MLW-LEEWTMGAGAM 376
                 +  +L  L L  N                 L+ L L +  +  L+   +   A 
Sbjct: 113 KNNPFVKQKNLITLDLSHNGL--SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170

Query: 377 PKLESLIL--NPCAYLRKLPEEQWCIKSLCKLE 407
             L+ L L  N    +++      C  ++ +L 
Sbjct: 171 SSLKKLELSSNQ---IKEFSPG--CFHAIGRLF 198

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 66/364 (18%), Positives = 107/364 (29%), Gaps = 64/364 (17%)

Query: 133 FKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLL------------ 180
              LR L +    L   P     L  L      +  L  LPS LC L             
Sbjct: 80  PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL 139

Query: 181 --NLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIF----ISA 234
              LQ L +  + +   P     + KL   N    +LP  P      L+ L      +++
Sbjct: 140 PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSG----LQELSVSDNQLAS 195

Query: 235 LHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE-----GKMR 289
           L      P +   L     L    +     + +      L +L      N          
Sbjct: 196 L------PTLPSEL---YKLWAYNNR---LTSLPALPSGLKELIVSG--NRLTSLPVLPS 241

Query: 290 QLSRMILSEYKF------PPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERK 343
           +L  +++S  +       P  L  LS+   +L   P  +L  L     + L+ N      
Sbjct: 242 ELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEGN-----P 295

Query: 344 LACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSL 403
           L+     +  ++      S   +     GA A  +  +L L    +L    E +      
Sbjct: 296 LSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPA---- 351

Query: 404 CKLELHWPQPELRQLLRAFEDMEWRKSQMVEASYIAAIWLSISTVISAL-----IRSILF 458
                 W          AF     R S+       A     IS+ ++ L     +R+  F
Sbjct: 352 --PADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEALRANTF 409

Query: 459 ISAA 462
             A 
Sbjct: 410 AMAT 413

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 55/280 (19%), Positives = 96/280 (34%), Gaps = 54/280 (19%)

Query: 134 KHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYID 193
               VLN+G + L   P  L     +  L +   +L  LP+L      L+TLE+  + + 
Sbjct: 40  NGNAVLNVGESGLTTLPDCLPAH--ITTLVIPDNNLTSLPALPP---ELRTLEVSGNQLT 94

Query: 194 HSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIF----ISALHPSSCTPDILGRLP 249
             P     + +L   +     LPA P      L  L      +++L             P
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLPALPSG----LCKLWIFGNQLTSLPVL---------PP 141

Query: 250 NVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLS 309
            +Q L +S +     + +     +L KL         ++  L  +          L +LS
Sbjct: 142 GLQELSVSDN---QLASLPALPSELCKLWAYNN----QLTSLPMLP-------SGLQELS 187

Query: 310 LSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEW 369
           +S+ +L   P         L  L    N     +L  +  +    LK L + S   L   
Sbjct: 188 VSDNQLASLP----TLPSELYKLWAYNN-----RLTSLP-ALPSGLKELIV-SGNRLTSL 236

Query: 370 TMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELH 409
            +      +L+ L+++    L  LP        L  L ++
Sbjct: 237 PV---LPSELKELMVSGN-RLTSLPML---PSGLLSLSVY 269

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 33/258 (12%)

Query: 133 FKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKL---NIPSLKCLPSLLCTLLNLQTLEMP 188
                 L L S  L   P G  + L  L  L L    +    C         +L+ L++ 
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 189 SSYIDHSPEDIWMMQKLMHLNFGSITLPA-PPKNNSSPLKNLIF--ISALHPSSCTPDIL 245
            + +     +   +++L HL+F    L      +    L+NLI+  IS  H       I 
Sbjct: 87  FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 246 GRLPNVQTLRISG--DLSYYHSGVSKSLCQLHKLE----CLKLVNEGKMRQLSRMILSEY 299
             L +++ L+++G      +   +   L  L  L+     L+ ++      L        
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL-------- 198

Query: 300 KFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILH 359
               SL  L++S+           + L  L+VL    N  +              L  L+
Sbjct: 199 ---SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLN 254

Query: 360 LK--------SMLWLEEW 369
           L               +W
Sbjct: 255 LTQNDFACTCEHQSFLQW 272

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 1/85 (1%)

Query: 301 FPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHL 360
            P S T+L L + +L   P    ++L  L  L L  N    +            LK L L
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 361 KSMLWLEEWTMGAGAMPKLESLILN 385
            S   +   +     + +LE L   
Sbjct: 86  -SFNGVITMSSNFLGLEQLEHLDFQ 109

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 9e-08
 Identities = 46/237 (19%), Positives = 77/237 (32%), Gaps = 52/237 (21%)

Query: 131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKL------NIPSLKCLPSL--------- 175
                +  LNLG+         L N+  L YL +      ++  +  L  L         
Sbjct: 129 ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ 188

Query: 176 ------LCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGS--ITLPAPPKNNSSPLK 227
                 L +L +L       + I      +  M +L  L  G+  IT       + SPL 
Sbjct: 189 IEDISPLASLTSLHYFTAYVNQI-TDITPVANMTRLNSLKIGNNKIT-------DLSPLA 240

Query: 228 NLIFISALHPSSC---TPDILGRLPNVQTLRISG----DLSYYHSGVSKSLCQLHKLECL 280
           NL  ++ L   +      + +  L  ++ L +      D+S         L  L +L  L
Sbjct: 241 NLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS--------VLNNLSQLNSL 292

Query: 281 KLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQN 337
            L N     QL    +       +LT L LS   + +  +  L  L  ++       
Sbjct: 293 FLNNN----QLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.0 bits (123), Expect = 4e-07
 Identities = 45/232 (19%), Positives = 74/232 (31%), Gaps = 42/232 (18%)

Query: 131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSS 190
           +   +LR L L    +    P L NL  +  L L         S L  +  L  L +  S
Sbjct: 107 QNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES 165

Query: 191 YIDHSPEDIWMMQKLMHLNFGS--ITLPAPPKNNSSPLKNLIFISALHPSSC---TPDIL 245
            +      I  +  L  L+     I        + SPL +L  +               +
Sbjct: 166 KVKDVTP-IANLTDLYSLSLNYNQIE-------DISPLASLTSLHYFTAYVNQITDITPV 217

Query: 246 GRLPNVQTLRISG----DLSYYHSGVSKSLCQLHKLECLKLVN--------EGKMRQLSR 293
             +  + +L+I      DLS         L  L +L  L++             + +L  
Sbjct: 218 ANMTRLNSLKIGNNKITDLS--------PLANLSQLTWLEIGTNQISDINAVKDLTKLKM 269

Query: 294 MILSE---YKFPP-----SLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQN 337
           + +                L  L L+N +L  + M  +  L +L  L L QN
Sbjct: 270 LNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 8e-06
 Identities = 38/226 (16%), Positives = 75/226 (33%), Gaps = 42/226 (18%)

Query: 136 LRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHS 195
              L    A ++Q  P   +L       L   S+  + +    L ++  L +    +  S
Sbjct: 2   AATLATLPAPINQIFP-DADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKV-AS 58

Query: 196 PEDIWMMQKLMHLNFGS--ITLPAPPKNNSSPLKNLIFISALHPSSC---TPDILGRLPN 250
            + I  +  L +LN     IT       + SPL NL+ ++ L+  +        L  L N
Sbjct: 59  IQGIEYLTNLEYLNLNGNQIT-------DISPLSNLVKLTNLYIGTNKITDISALQNLTN 111

Query: 251 VQTLRISG------------------DLSY-YHSGVSKSLCQLHKLECLKLVNEGKMRQL 291
           ++ L ++                   +L   ++      L  +  L  L +       ++
Sbjct: 112 LRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES----KV 167

Query: 292 SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQN 337
               ++       L  LSL+  ++ +  +  L  L  L       N
Sbjct: 168 KD--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVN 209

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 58/257 (22%), Positives = 91/257 (35%), Gaps = 58/257 (22%)

Query: 133 FKHLRVLNLGSAVLDQYPPGLENLFYLKYLKL------NIPSLKCLPSL----------- 175
              +  L      + +   G+E L  L  +        +I  LK L  L           
Sbjct: 45  LDQVTTLQADRLGI-KSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA 103

Query: 176 ----LCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIF 231
               L  L NL  L + ++ I    + +  +  L  L   S T+     ++ S L  L  
Sbjct: 104 DITPLANLTNLTGLTLFNNQI-TDIDPLKNLTNLNRLELSSNTI-----SDISALSGLTS 157

Query: 232 ISALHPSSCTPDI--LGRLPNVQTLRISG----DLSYYHSGVSKSLCQLHKLECLKLVNE 285
           +  L   +   D+  L  L  ++ L IS     D+S         L +L  LE L   N 
Sbjct: 158 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS--------VLAKLTNLESLIATN- 208

Query: 286 GKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQN--SYLERK 343
               Q+S   ++      +L +LSL+  +L +  + TL  L +L  L L  N  S L   
Sbjct: 209 ---NQISD--ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA-- 259

Query: 344 LACVGCSSFPQLKILHL 360
                 S   +L  L L
Sbjct: 260 ----PLSGLTKLTELKL 272

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 43/241 (17%), Positives = 77/241 (31%), Gaps = 53/241 (21%)

Query: 131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKL------NIPSLKCLPSL--------- 175
            K  +L  L   +  +    P L  L  L  L L      +I +L  L +L         
Sbjct: 196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 254

Query: 176 ------LCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGS--ITLPAPPKNNSSPLK 227
                 L  L  L  L++ ++ I  +   +  +  L +L      +        + SP+ 
Sbjct: 255 ISNLAPLSGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQLE-------DISPIS 306

Query: 228 NLIFISALHPSSC---TPDILGRLPNVQTLRISG----DLSYYHSGVSKSLCQLHKLECL 280
           NL  ++ L            +  L  +Q L        D+S        SL  L  +  L
Sbjct: 307 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS--------SLANLTNINWL 358

Query: 281 KLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYL 340
              +     Q+S   L+       +TQL L++      P+     +     +K    + +
Sbjct: 359 SAGHN----QISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

Query: 341 E 341
            
Sbjct: 413 A 413

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 41/202 (20%), Positives = 69/202 (34%), Gaps = 20/202 (9%)

Query: 165 NIPSLKCLPS---LLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKN 221
             P  KC+ S     C   ++  ++M +  +    EDI +      + F + T+   P  
Sbjct: 12  RQPEYKCIDSNLQYDCVFYDVH-IDMQTQDVYFGFEDITL-NNQKIVTFKNSTMRKLPAA 69

Query: 222 NSSPLKNL--IFISALHPSSCTPDILGRLPNVQTLRISG-DLSYYHSGVSKSLCQLHKLE 278
                + +  + ++ L               +Q L +    + Y    V      +  L 
Sbjct: 70  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV---FQNVPLLT 126

Query: 279 CLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNS 338
            L L     +  L R I       P LT LS+SN  L      T +    L+ L+L  N 
Sbjct: 127 VLVL-ERNDLSSLPRGIFHNT---PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN- 181

Query: 339 YLERKLACVGCSSFPQLKILHL 360
               +L  V  S  P L   ++
Sbjct: 182 ----RLTHVDLSLIPSLFHANV 199

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 58/296 (19%), Positives = 98/296 (33%), Gaps = 34/296 (11%)

Query: 120 HLALIHCENFCKKFKHLRVLNLGSAVLDQYPPGL-ENLFYLKYLKLNIPSLKCLPS-LLC 177
            +  I    F      ++ L +G   +   PP + +N+  L  L L    L  LP  +  
Sbjct: 86  QIEEIDTYAF-AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 144

Query: 178 TLLNLQTLEMPSSYIDHSPEDIWM-MQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALH 236
               L TL M ++ ++   +D +     L +L   S  L     +    + +L      +
Sbjct: 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL---IPSLFH---AN 198

Query: 237 PSSCTPDILGRLPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMI 295
            S      L     V+ L  S   ++     V+  L  L  L+   L +   +       
Sbjct: 199 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK-LQHNNLTDTAWLLNY---- 253

Query: 296 LSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQN--SYLERKLACVGCSSFP 353
                  P L ++ LS  EL +       ++  LE L +  N    L            P
Sbjct: 254 -------PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG-----QPIP 301

Query: 354 QLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELH 409
            LK+L L     L           +LE+L L+  + +  L        +L  L L 
Sbjct: 302 TLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLKLSTH--HTLKNLTLS 353

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 50/309 (16%)

Query: 127 ENFCKKFKHLRVLNLGSAVLD--QYPPGLENLFYLKYLKLNIPSLKCLPSLL---CTLLN 181
           + + +  K L  L+L    +      P    L  LK +  +   +  +            
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175

Query: 182 LQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCT 241
           L    + ++ +       W  + +       + +     N  +      F +A+  S   
Sbjct: 176 LSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS--Q 232

Query: 242 PDILGRLPNVQTLRISG-DLSYYHSGVSKSLCQ-----------------------LHKL 277
              L    ++        ++          L +                       L  L
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL 292

Query: 278 ECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQN 337
           + L L    K+ +++           +L  L+LS   L E        LP +  + L++N
Sbjct: 293 KVLNLAY-NKINKIADEAFYG---LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 338 SYLERKLACVGCSSF---PQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLP 394
                 +A +   +F    +L+ L L+    L         +P +  + L+    L  LP
Sbjct: 349 -----HIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF----IPSIPDIFLSGN-KLVTLP 397

Query: 395 EEQWCIKSL 403
           +       +
Sbjct: 398 KINLTANLI 406

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 45/229 (19%), Positives = 81/229 (35%), Gaps = 38/229 (16%)

Query: 120 HLALIHCENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTL 179
           H+A+I  + F K  + L+ L+L    L      +  +  +  + L+   L  LP +  T 
Sbjct: 349 HIAIIQDQTF-KFLEKLQTLDLRDNALTT----IHFIPSIPDIFLSGNKLVTLPKINLTA 403

Query: 180 LNLQTLEMPSSYIDHSPEDIWMMQKLMHL--------NFGSITLPAPPKNNSSPLKNLI- 230
             +   E     +D      + + ++ HL         F S +    P  N S L+ L  
Sbjct: 404 NLIHLSENRLENLDIL----YFLLRVPHLQILILNQNRFSSCSGDQTPSENPS-LEQLFL 458

Query: 231 ---FISALHPSSCTPDILGRLPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECLKLVNEG 286
               +     +    D+   L ++Q L ++   L+    GV   L  L  L         
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL--------- 509

Query: 287 KMRQLSR---MILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVL 332
               L+     +LS    P +L  L +S  +L+         L  L++ 
Sbjct: 510 ---SLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDIT 555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 51/237 (21%), Positives = 86/237 (36%), Gaps = 25/237 (10%)

Query: 133 FKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKL---NIPSLKCLPSLLCTLLNLQTLEMP 188
             +L+VLNL   +L +        L  + Y+ L   +I  ++        L  LQTL++ 
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD--QTFKFLEKLQTLDLR 370

Query: 189 SSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPD-ILGR 247
            + +      I  +  +  +      L   PK N +   NLI +S     +      L R
Sbjct: 371 DNAL----TTIHFIPSIPDIFLSGNKLVTLPKINLT--ANLIHLSENRLENLDILYFLLR 424

Query: 248 LPNVQTLRISGDLSYYHSGVSKSLCQ-LHKLECLKLVNEGKMRQLSRMILSEYKFP--PS 304
           +P++Q L ++   + + S            LE L L  E  ++      L    F     
Sbjct: 425 VPHLQILILNQ--NRFSSCSGDQTPSENPSLEQLFL-GENMLQLAWETELCWDVFEGLSH 481

Query: 305 LTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSF-PQLKILHL 360
           L  L L++  L   P      L  L  L L  N     +L  +  +     L+IL +
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-----RLTVLSHNDLPANLEILDI 533

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 42/200 (21%), Positives = 70/200 (35%), Gaps = 20/200 (10%)

Query: 167 PSLKCLPSLL---CTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNS 223
           P  KC+ S L   C   ++  ++M +  +    EDI +      + F + T+   P    
Sbjct: 8   PEYKCIDSNLQYDCVFYDVH-IDMQTQDVYFGFEDITL-NNQKIVTFKNSTMRKLPAALL 65

Query: 224 SPLKNL--IFISALHPSSCTPDILGRLPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECL 280
              + +  + ++ L               +Q L +    + Y    V      +  L  L
Sbjct: 66  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV---FQNVPLLTVL 122

Query: 281 KLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYL 340
            L     +  L R I       P LT LS+SN  L      T +    L+ L+L  N   
Sbjct: 123 VL-ERNDLSSLPRGIFHNT---PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN--- 175

Query: 341 ERKLACVGCSSFPQLKILHL 360
             +L  V  S  P L   ++
Sbjct: 176 --RLTHVDLSLIPSLFHANV 193

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 54/275 (19%), Positives = 90/275 (32%), Gaps = 37/275 (13%)

Query: 120 HLALIHCENFCKKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPS-LLC 177
            +  I    F      ++ L +G   +   PP   +N+  L  L L    L  LP  +  
Sbjct: 80  QIEEIDTYAF-AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 138

Query: 178 TLLNLQTLEMPSSYIDHSPEDIWM-MQKLMHLNFGS---ITLPAPPKNNSSPLKNLIFIS 233
               L TL M ++ ++   +D +     L +L   S     +        S + +L    
Sbjct: 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD------LSLIPSL---F 189

Query: 234 ALHPSSCTPDILGRLPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLS 292
             + S      L     V+ L  S   ++     V+  L  L  L+   L +   +    
Sbjct: 190 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK-LQHNNLTDTAWLLNY- 247

Query: 293 RMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQN--SYLERKLACVGCS 350
                     P L ++ LS  EL +       ++  LE L +  N    L          
Sbjct: 248 ----------PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG-----Q 292

Query: 351 SFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILN 385
             P LK+L L     L           +LE+L L+
Sbjct: 293 PIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLD 326

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 49/255 (19%), Positives = 85/255 (33%), Gaps = 52/255 (20%)

Query: 131 KKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMP 188
           K  +HL +L L    +     G    L  L  L+L    L  +P+     L  L+ L + 
Sbjct: 85  KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144

Query: 189 SSYIDHSPEDIWM-MQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGR 247
           ++ I+  P   +  +  L  L+ G                    +S +            
Sbjct: 145 NNPIESIPSYAFNRIPSLRRLDLGE--------LKR--------LSYISE-----GAFEG 183

Query: 248 LPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFP--PS 304
           L N++ L ++  +L    +     L  L KL+ L L        LS   +    F     
Sbjct: 184 LSNLRYLNLAMCNLREIPN-----LTPLIKLDELDLSGN----HLSA--IRPGSFQGLMH 232

Query: 305 LTQLSLSNTELVEDPMPTLEELPHLEVLKLKQN--SYLERKLACVGCSSFPQLKILHLKS 362
           L +L +  +++        + L  L  + L  N  + L   L     +    L+ +HL  
Sbjct: 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL----FTPLHHLERIHLHH 288

Query: 363 --------MLWLEEW 369
                   +LWL  W
Sbjct: 289 NPWNCNCDILWLSWW 303

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 45/248 (18%), Positives = 84/248 (33%), Gaps = 40/248 (16%)

Query: 132 KFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLN-------IPSLKCLPSLLCTLLNLQT 184
               L  L L ++ ++    G +    L  L L+       + +L      L +   L+ 
Sbjct: 75  SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTS----LGSCSGLKF 130

Query: 185 LEMPSSYIDHS--PEDIWMMQKLMHLNF------GSITLPAPPKNNSSPLKNLIFISALH 236
           L + S+ +D          +  L  L+       G+  +     +    LK+L       
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI----- 185

Query: 237 PSSC--TPDI-LGRLPNVQTLRISGDLSYYH-SGVSKSLCQLHKLECLKLVNEGKMRQLS 292
            S    + D+ + R  N++ L    D+S  + S     L     L+ L +       +LS
Sbjct: 186 -SGNKISGDVDVSRCVNLEFL----DVSSNNFSTGIPFLGDCSALQHLDISGN----KLS 236

Query: 293 RMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSF 352
                       L  L++S+ +    P+P    L  L+ L L +N     ++      + 
Sbjct: 237 GDFSRAISTCTELKLLNISSNQF-VGPIPP-LPLKSLQYLSLAENK-FTGEIPDFLSGAC 293

Query: 353 PQLKILHL 360
             L  L L
Sbjct: 294 DTLTGLDL 301

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 7e-06
 Identities = 55/252 (21%), Positives = 85/252 (33%), Gaps = 53/252 (21%)

Query: 127 ENFCKKFKHLRVLNLGSAVLD-QYPPGLENLFYLKYLKL-------NIPSLKCLPSLLCT 178
           +        L  L+L         PP   +   L+ L L        +P        L  
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP-----MDTLLK 341

Query: 179 LLNLQTLEMPSSYIDHS-PEDIWMM-QKLMHLNFGS--ITLPAPPKNNSSPLKNLIFISA 234
           +  L+ L++  +      PE +  +   L+ L+  S   + P  P    +P   L  +  
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

Query: 235 LHPSSCT-----PDILGRLPNVQTLRISGDLSY-YHSG-VSKSLCQLHKLECLKL----- 282
               +       P  L     + +L     LS+ Y SG +  SL  L KL  LKL     
Sbjct: 402 ---QNNGFTGKIPPTLSNCSELVSL----HLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454

Query: 283 -----VNEGKMRQLSRMILSEYKF----PPS------LTQLSLSNTELVEDPMP-TLEEL 326
                     ++ L  +IL         P        L  +SLSN  L    +P  +  L
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL-TGEIPKWIGRL 513

Query: 327 PHLEVLKLKQNS 338
            +L +LKL  NS
Sbjct: 514 ENLAILKLSNNS 525

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.7 bits (96), Expect = 9e-04
 Identities = 34/189 (17%), Positives = 62/189 (32%), Gaps = 45/189 (23%)

Query: 172 LPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIF 231
           + S L +L  L++L + +S+I+ S         L  L+           N+         
Sbjct: 69  VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR--------NS--------L 112

Query: 232 ISALHPSSCTPDILGRLPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECLKL-------- 282
              +   +     LG    ++ L +S   L +   G      +L+ LE L L        
Sbjct: 113 SGPVTTLTS----LGSCSGLKFLNVSSNTLDF--PGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 283 -----VNEGKMRQLSRMILSEYKF----P----PSLTQLSLSNTELVEDPMPTLEELPHL 329
                V      +L  + +S  K           +L  L +S+       +P L +   L
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNF-STGIPFLGDCSAL 225

Query: 330 EVLKLKQNS 338
           + L +  N 
Sbjct: 226 QHLDISGNK 234

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 42/252 (16%), Positives = 76/252 (30%), Gaps = 39/252 (15%)

Query: 131 KKFKHLRVLNLGSAVLDQY--PPGL-ENLFYLKYLKLNIPSLKCLP--SLLCTLLNLQTL 185
               +L VL L    LD         + L  L+ L L   ++K +   S    +     L
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159

Query: 186 EMPSSYIDHSPEDIWMM---QKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTP 242
           ++  + +    E+  +    +    L   SITL    +      K               
Sbjct: 160 DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF---------- 209

Query: 243 DILGRLPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL----SRMILS 297
               +  ++ TL +SG       +          K++ L L N   M       +     
Sbjct: 210 ----KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 298 EYKF----PPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSF- 352
            + F       +    LS +++             LE L L QN     ++  +  ++F 
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-----EINKIDDNAFW 320

Query: 353 --PQLKILHLKS 362
               L  L+L  
Sbjct: 321 GLTHLLKLNLSQ 332

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 57/296 (19%), Positives = 100/296 (33%), Gaps = 42/296 (14%)

Query: 135 HLRVLNLGSAVLDQYPPGL-ENLFYLKYLKLN-IPSLKCLPSLLCTLLNLQTLEMPSSYI 192
           HLRV+      L   P  +  +   L  L+ N I  L+        L +L  L + ++ I
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPDTTLL-DLQNNDISELR--KDDFKGLQHLYALVLVNNKI 90

Query: 193 DH-SPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIF----ISALHPSSCTPDILGR 247
                +    ++KL  L      L   P N  S L  L      I  +            
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGV-----FSG 145

Query: 248 LPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQ 307
           L N+  + + G+    +SG         KL  L++ +E K+  + +        P +L +
Sbjct: 146 LRNMNCIEMGGN-PLENSGFEPGAFDGLKLNYLRI-SEAKLTGIPK------DLPETLNE 197

Query: 308 LSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSF---PQLKILHLKSML 364
           L L + ++    +  L     L  L L  N     ++  +   S    P L+ LHL +  
Sbjct: 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHN-----QIRMIENGSLSFLPTLRELHLDNNK 252

Query: 365 WLEEWTMGAGAMPKLESLIL--NPCAYLRKLPEEQWCIKSLCKLELHWPQPELRQL 418
            L     G   +  L+ + L  N    + K+          C +     +     +
Sbjct: 253 -LSRVPAGLPDLKLLQVVYLHTNN---ITKVGVN-----DFCPVGFGVKRAYYNGI 299

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 40/248 (16%), Positives = 77/248 (31%), Gaps = 41/248 (16%)

Query: 134 KHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCT-LLNLQTLEMPSSYI 192
           + L+ L +    L + PP L     L  L+++   ++ +P  + + L N+  +EM  + +
Sbjct: 102 RKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159

Query: 193 DHS--PEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIF----ISALHPSSCTPDILG 246
           ++S      +   KL +L      L   PK+    L  L      I A+         L 
Sbjct: 160 ENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELED-----LL 214

Query: 247 RLPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFP--- 302
           R   +  L +    +    +G    L  L +L             L    LS    P   
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLREL------------HLDNNKLSR--VPAGL 260

Query: 303 ---PSLTQLSLSNTELVE------DPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFP 353
                L  + L    + +       P+    +  +   + L  N     ++         
Sbjct: 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320

Query: 354 QLKILHLK 361
               +   
Sbjct: 321 DRLAIQFG 328

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 45/303 (14%), Positives = 89/303 (29%), Gaps = 67/303 (22%)

Query: 131 KKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLN------IPSLKCLPSL-------- 175
           +   +++ L+L    L Q     L     L+ L L+         L+ L +L        
Sbjct: 31  QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN 90

Query: 176 ----LCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIF 231
               L    +++TL   ++ I          Q   ++            NN         
Sbjct: 91  YVQELLVGPSIETLHAANNNISRVSCSR--GQGKKNIYLA---------NNK-------- 131

Query: 232 ISALHPSSCTPDILGRLPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ 290
           I+ L          G    VQ L +   ++   +    +       LE L L        
Sbjct: 132 ITMLRDLD-----EGCRSRVQYLDLKLNEIDTVNFA--ELAASSDTLEHLNLQY----NF 180

Query: 291 LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQN--SYLERKLACVG 348
           +    +        L  L LS+ +L     P  +    +  + L+ N    +E+ L    
Sbjct: 181 IYD--VKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEKAL---- 233

Query: 349 CSSFPQLKILHLK----SMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLC 404
                 L+   L+        L ++        +++++       L    EE+  + +L 
Sbjct: 234 -RFSQNLEHFDLRGNGFHCGTLRDFFSK---NQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 405 KLE 407
              
Sbjct: 290 HYG 292

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 6e-06
 Identities = 39/197 (19%), Positives = 69/197 (35%), Gaps = 38/197 (19%)

Query: 152 GLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFG 211
             +         L   S+    +    L ++  +   +S I  S + I  +  +  L   
Sbjct: 16  PDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLN 73

Query: 212 S--ITLPAPPKNNSSPLKNLIFISALHPSSCT-PDI--LGRLPNVQTLRISG----DLSY 262
              +T       +  PL NL  +  L        D+  L  L  +++L +      D++ 
Sbjct: 74  GNKLT-------DIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN- 125

Query: 263 YHSGVSKSLCQLHKLECLKLVNEG--KMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPM 320
                   L  L +LE L L N     +  LSR+          L  LSL + ++ +  +
Sbjct: 126 -------GLVHLPQLESLYLGNNKITDITVLSRL--------TKLDTLSLEDNQISD--I 168

Query: 321 PTLEELPHLEVLKLKQN 337
             L  L  L+ L L +N
Sbjct: 169 VPLAGLTKLQNLYLSKN 185

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 20/222 (9%), Positives = 55/222 (24%), Gaps = 8/222 (3%)

Query: 120 HLALIHCENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTL 179
            +  ++          L  LNL    +      +     LK L L+   L  +     + 
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSA 213

Query: 180 LNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGS--ITLPAPPKNNSSPLKNLIFISALHP 237
             +  + + ++ +    + +   Q L H +               S   + +  ++    
Sbjct: 214 AGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK-NQRVQTVAKQTV 272

Query: 238 SSCTPDILGRLPNVQTLRISGDLSYYHSGVSKS-LCQLHKLECLKLVNEGKMRQLSRMIL 296
              T                   +Y    +      +L  L+  +          +  + 
Sbjct: 273 KKLTGQNEEECTVPTLGHYG---AYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE 329

Query: 297 SEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNS 338
            E +      ++     +                 L+ K+ +
Sbjct: 330 CERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKA 371

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 47/264 (17%), Positives = 87/264 (32%), Gaps = 54/264 (20%)

Query: 108 ESLSNVKRSKSDHLALIHCENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKL--- 164
            +L+N  +  +    +            +  L+     +     G++ L  L  L+L   
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQ-ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN 73

Query: 165 ---NIPSLKCLPSL---------------LCTLLNLQTLEMPSSYIDHSPEDIWMMQKLM 206
              ++  LK L  +               +  L +++TL++ S+ I      +  +  L 
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI-TDVTPLAGLSNLQ 132

Query: 207 HLNFGS--ITLPAPPKNNSSPLKNLIFISALHPSSC---TPDILGRLPNVQTLRISG--- 258
            L      IT       N SPL  L  +  L   +        L  L  + TL+      
Sbjct: 133 VLYLDLNQIT-------NISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI 185

Query: 259 -DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVE 317
            D+S         L  L  L  + L N     Q+S   +S      +L  ++L+N  +  
Sbjct: 186 SDIS--------PLASLPNLIEVHLKNN----QISD--VSPLANTSNLFIVTLTNQTITN 231

Query: 318 DPMPTLEELPHLEVLKLKQNSYLE 341
            P+     L    V+K    + + 
Sbjct: 232 QPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 46/218 (21%), Positives = 79/218 (36%), Gaps = 34/218 (15%)

Query: 152 GLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFG 211
               L     +     ++    +    L  + TL    + +  + E +  +  L+ L   
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVTQ-ADLDGITTLSAFGTGV-TTIEGVQYLNNLIGLELK 71

Query: 212 S--ITLPAPPKNNSSPLKNLIFISALHPSSC---TPDILGRLPNVQTLRISGDLSYYHSG 266
              IT       + +PLKNL  I+ L  S         +  L +++TL    DL+     
Sbjct: 72  DNQIT-------DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTL----DLTSTQIT 120

Query: 267 VSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEEL 326
               L  L  L+ L L       Q++   +S      +L  LS+ N ++ +  +  L  L
Sbjct: 121 DVTPLAGLSNLQVLYLDL----NQITN--ISPLAGLTNLQYLSIGNAQVSD--LTPLANL 172

Query: 327 PHLEVLKLKQN--SYLERKLACVGCSSFPQLKILHLKS 362
             L  LK   N  S +         +S P L  +HLK+
Sbjct: 173 SKLTTLKADDNKISDIS------PLASLPNLIEVHLKN 204

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 53/255 (20%), Positives = 84/255 (32%), Gaps = 52/255 (20%)

Query: 131 KKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMP 188
           +   HL VL LG   + Q   G    L  L  L+L    L  +PS     L  L+ L + 
Sbjct: 96  RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155

Query: 189 SSYIDHSPEDIWM-MQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGR 247
           ++ I+  P   +  +  LM L+ G                    +  +            
Sbjct: 156 NNPIESIPSYAFNRVPSLMRLDLGE--------LKK--------LEYISE-----GAFEG 194

Query: 248 LPNVQTLRISG-DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFP--PS 304
           L N++ L +   ++    +     L  L  LE L++             +    F    S
Sbjct: 195 LFNLKYLNLGMCNIKDMPN-----LTPLVGLEELEMSGN----HFPE--IRPGSFHGLSS 243

Query: 305 LTQLSLSNTELVEDPMPTLEELPHLEVLKLKQN--SYLERKLACVGCSSFPQLKILHLKS 362
           L +L + N+++        + L  L  L L  N  S L   L     +    L  LHL  
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL----FTPLRYLVELHLHH 299

Query: 363 --------MLWLEEW 369
                   +LWL  W
Sbjct: 300 NPWNCDCDILWLAWW 314

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 40/245 (16%), Positives = 85/245 (34%), Gaps = 38/245 (15%)

Query: 108 ESLSNVKRSKSDHLALIHCENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIP 167
           ++ +   +      ++        +   +  +   ++ +     G++ L  +  L LN  
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN 78

Query: 168 SLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGS--ITLPAPPKNNSSP 225
            L  +   L  L NL  L +  + +      +  ++KL  L+     I+       + + 
Sbjct: 79  KLTDIKP-LANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLSLEHNGIS-------DING 129

Query: 226 LKNLIFISALHPSSC---TPDILGRLPNVQTLRISG----DLSYYHSGVSKSLCQLHKLE 278
           L +L  + +L+  +       +L RL  + TL +      D+          L  L KL+
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--------PLAGLTKLQ 181

Query: 279 CLKLVNEG--KMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQ 336
            L L       +R L+ +         +L  L L + E +  P+     L     +K   
Sbjct: 182 NLYLSKNHISDLRALAGL--------KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 233

Query: 337 NSYLE 341
            S + 
Sbjct: 234 GSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 39/197 (19%), Positives = 69/197 (35%), Gaps = 38/197 (19%)

Query: 152 GLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFG 211
             +         L   S+    +    L ++  +   +S I  S + I  +  +  L   
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLN 76

Query: 212 S--ITLPAPPKNNSSPLKNLIFISALHPSSCT-PDI--LGRLPNVQTLRISG----DLSY 262
              +T       +  PL NL  +  L        D+  L  L  +++L +      D++ 
Sbjct: 77  GNKLT-------DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN- 128

Query: 263 YHSGVSKSLCQLHKLECLKLVNEG--KMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPM 320
                   L  L +LE L L N     +  LSR+          L  LSL + ++ +  +
Sbjct: 129 -------GLVHLPQLESLYLGNNKITDITVLSRL--------TKLDTLSLEDNQISD--I 171

Query: 321 PTLEELPHLEVLKLKQN 337
             L  L  L+ L L +N
Sbjct: 172 VPLAGLTKLQNLYLSKN 188

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 50/277 (18%), Positives = 81/277 (29%), Gaps = 51/277 (18%)

Query: 130 CKKFKHLRVLNLGSAVLDQYPPGLE--NLFYLKYLKLNIPSLKCLPSLLCTLLNLQT--L 185
           C     LR L+L     D  P   E  NL  L +L L+    + L  L    L+L    L
Sbjct: 117 CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILL 176

Query: 186 EMPSSYIDHSPEDIWMMQKL--MHLNFGSITLPAPPKNNS-------------------- 223
           ++ S +I     +   +     +HL F   +L +   N S                    
Sbjct: 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236

Query: 224 ------------SPLKNLIFISALHPSSCTPDILGRL--PNVQTLRISGDLSYYHSG--- 266
                         L N+          C+  +        V+ L I  +L+        
Sbjct: 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY-NLTITERIDRE 295

Query: 267 -VSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEE 325
             + S   L  L    + N    +       + Y     +    LS ++     M     
Sbjct: 296 EFTYSETALKSLMIEHVKN----QVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS 351

Query: 326 LPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKS 362
                 L   QN +        GCS+  +L+ L L+ 
Sbjct: 352 PSSFTFLNFTQNVFT--DSVFQGCSTLKRLQTLILQR 386

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 55/287 (19%), Positives = 97/287 (33%), Gaps = 45/287 (15%)

Query: 135 HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDH 194
           HL  L      L + P   ++L  L     N+ +L  LP        L+ L + ++ ++ 
Sbjct: 92  HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP------LLEYLGVSNNQLEK 145

Query: 195 SPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTL 254
            PE +     L  ++  + +L   P        +L FI+A +        L  LP +  +
Sbjct: 146 LPE-LQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELPELQNLPFLTAI 200

Query: 255 RISG-DLSYYHSGVSKSLCQLHKLEC----LKLVNE-GKMRQLSRMILSEYKF------P 302
                 L      +      L  +      L+ + E   +  L+ +             P
Sbjct: 201 YADNNSLKK----LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLP 256

Query: 303 PSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKS 362
           PSL  L++ +  L + P    E    L  L + +N +    L+       P L  L+  S
Sbjct: 257 PSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIF--SGLS----ELPPNLYYLNA-S 305

Query: 363 MLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELH 409
              +          P LE L ++    L +LP        L +L   
Sbjct: 306 SNEIRSLC---DLPPSLEELNVSNN-KLIELPAL---PPRLERLIAS 345

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 31/208 (14%)

Query: 131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSS 190
           +    L+++++ +  L + P    +   L+++      L+ LP  L  L  L  +   ++
Sbjct: 150 QNSSFLKIIDVDNNSLKKLPDLPPS---LEFIAAGNNQLEELPE-LQNLPFLTAIYADNN 205

Query: 191 YIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCT-PDILGRLP 249
            +   P+       L  +  G+  L   P      L+NL F++ ++  +     +    P
Sbjct: 206 SLKKLPDLP---LSLESIVAGNNILEELP-----ELQNLPFLTTIYADNNLLKTLPDLPP 257

Query: 250 NVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLS 309
           +++ L +  +   Y + + +    L  L+  + +  G         LSE   PP+L  L+
Sbjct: 258 SLEALNVRDN---YLTDLPELPQSLTFLDVSENIFSG---------LSE--LPPNLYYLN 303

Query: 310 LSNTELVEDPMPTLEELPHLEVLKLKQN 337
            S+ E+        +  P LE L +  N
Sbjct: 304 ASSNEIRSLC----DLPPSLEELNVSNN 327

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 48/292 (16%), Positives = 90/292 (30%), Gaps = 40/292 (13%)

Query: 131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSS 190
           ++   L  L+  ++ +     G+E L  L  L     ++  L   L    NL  L   S+
Sbjct: 39  EQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN 95

Query: 191 YIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPN 250
            + +    +  + KL +LN  +  L     + +  L  L        ++ T   +     
Sbjct: 96  KLTNLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLN----CARNTLTEIDVSHNTQ 149

Query: 251 VQTLRISGDLSYYHSGVSKSLCQLHKLECLKL-------VNEGKMRQLSRMILS------ 297
           +  L    D           +    +L  L         ++  + + L+R+         
Sbjct: 150 LTEL----DCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITK 205

Query: 298 -EYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLK 356
            +      LT L  S+ +L E     +  L  L       N      L  +  S+  +L 
Sbjct: 206 LDLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVN-----PLTELDVSTLSKLT 257

Query: 357 ILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLEL 408
            LH      L E         +L       C  +++L         L  L+ 
Sbjct: 258 TLHCIQTD-LLEID--LTHNTQLIYFQAEGCRKIKELDVTHN--TQLYLLDC 304

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 45/273 (16%), Positives = 83/273 (30%), Gaps = 48/273 (17%)

Query: 132 KFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSY 191
           +  +L  L   S  L      +  L  L YL  +   L  L         L  L    + 
Sbjct: 83  QNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLDVSQNP--LLTYLNCARNT 138

Query: 192 IDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNV 251
           +  +  D+    +L  L+            + +P   L  +     +  T   + +   +
Sbjct: 139 L--TEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD-CSFNKITELDVSQNKLL 193

Query: 252 QTLRISG-DLSYYHSGVSKSLCQLHKLECLKL-------VNEGKMRQLSRMILSEYKF-- 301
             L     +++         L Q  +L  L         ++   + QL+    S      
Sbjct: 194 NRLNCDTNNIT------KLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTE 247

Query: 302 -----PPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLK 356
                   LT L    T+L+E  +    +L + +    ++   L+        +   QL 
Sbjct: 248 LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD-------VTHNTQLY 300

Query: 357 ILHLK----SMLWLEEWTMGAGAMPKLESLILN 385
           +L  +    + L L          PKL  L LN
Sbjct: 301 LLDCQAAGITELDL-------SQNPKLVYLYLN 326

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 36/216 (16%), Positives = 75/216 (34%), Gaps = 37/216 (17%)

Query: 133 FKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYI 192
              + VL +    L   P    +L   +YL      L  LP L     +L+ L++ ++ +
Sbjct: 79  PPQITVLEITQNALISLPELPASL---EYLDACDNRLSTLPELPA---SLKHLDVDNNQL 132

Query: 193 DHSPEDIWMMQKLMHLNFGSIT-LPAPPKNNSSPLKNLI----FISALHPSSCTPDILGR 247
              PE   +++ + + +   +T LP  P +    L+ L      ++ L      P++   
Sbjct: 133 TMLPELPALLEYI-NADNNQLTMLPELPTS----LEVLSVRNNQLTFL------PELPES 181

Query: 248 LPNVQTLRISGDLSYYH-SGVSKSLCQLHKLECLKL---VNEGKMRQLSRMILSEYKFPP 303
           L   + L    D+S      +     + H  E  ++     E ++  +   ILS      
Sbjct: 182 L---EAL----DVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILS----LD 230

Query: 304 SLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSY 339
               + L +  L      +L +          +  +
Sbjct: 231 PTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 36/243 (14%), Positives = 77/243 (31%), Gaps = 35/243 (14%)

Query: 101 SSIFSEEESLSNVKRSKSDHLALIHCENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLK 160
           +  FS  +          +    +     C        L L    L   P  L     + 
Sbjct: 27  ADYFSAWDKWEKQALPGENRNEAVSLLKECL-INQFSELQLNRLNLSSLPDNLPPQ--IT 83

Query: 161 YLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSIT-LPAPP 219
            L++   +L  LP L     +L+ L+   + +   PE    ++ L  ++   +T LP  P
Sbjct: 84  VLEITQNALISLPELPA---SLEYLDACDNRLSTLPELPASLKHL-DVDNNQLTMLPELP 139

Query: 220 KNNSSPLKNLIF----ISALHPSSCTPDILGRLPNVQTLRISG-DLSYYHSGVSKSLCQL 274
                 L+ +      ++ L      P++   L   + L +    L++    + +    L
Sbjct: 140 AL----LEYINADNNQLTML------PELPTSL---EVLSVRNNQLTF----LPELPESL 182

Query: 275 HKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKL 334
             L+    V+   +  L  + +  +    +          +   P   +  L     + L
Sbjct: 183 EALD----VSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIP-ENILSLDPTCTIIL 237

Query: 335 KQN 337
           + N
Sbjct: 238 EDN 240

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 7/156 (4%)

Query: 235 LHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRM 294
           L   +  PD+ GRL +   +      S+    +++       ++ + L N          
Sbjct: 54  LTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHG 112

Query: 295 ILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQ 354
           ILS+      L  LSL    L +  + TL +  +L  L L   S           SS  +
Sbjct: 113 ILSQC---SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169

Query: 355 LKILHLKSMLWLEEWTMG---AGAMPKLESLILNPC 387
           L  L+L       E  +    A     +  L L+  
Sbjct: 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 45/289 (15%), Positives = 80/289 (27%), Gaps = 61/289 (21%)

Query: 139 LNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPED 198
             L     + +         L   +L++     L S L +   LQ LE         PE+
Sbjct: 331 CVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELE---------PEN 381

Query: 199 IWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALH----PSSCTPDILGRLPNVQTL 254
            W +  +  L   ++      K        L  +  +         +  +L         
Sbjct: 382 KWCLLTI-ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY 440

Query: 255 RISGDLSYYHSGVSK--SLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSN 312
                L   H  ++    L QL  +  L L +     +L   +         L  L  S+
Sbjct: 441 ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHN----RLRA-LPPALAALRCLEVLQASD 495

Query: 313 TELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMG 372
             L    +  +  LP L+ L L  N     +L          ++ L              
Sbjct: 496 NALEN--VDGVANLPRLQELLLCNN-----RL-----QQSAAIQPL-------------- 529

Query: 373 AGAMPKLESLIL--NPCAYLRKLPEEQWCIKSLCKLELHWPQPELRQLL 419
             + P+L  L L  N      +    Q  +  +         P +  +L
Sbjct: 530 -VSCPRLVLLNLQGNSLC---QEEGIQERLAEML--------PSVSSIL 566

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 25/150 (16%), Positives = 56/150 (37%), Gaps = 31/150 (20%)

Query: 245 LGRLPNVQTLRISG----DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYK 300
           +    N++ L I+     + +         +  L  LE L+++ +     ++   +    
Sbjct: 62  IEYAHNIKDLTINNIHATNYN--------PISGLSNLERLRIMGK----DVTSDKIPNLS 109

Query: 301 FPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHL 360
              SLT L +S++   +  +  +  LP +  + L  N  +   +  +   + P+LK L++
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI-TDIMPL--KTLPELKSLNI 166

Query: 361 -----KSMLWLEEWTMGAGAMPKLESLILN 385
                     +E+        PKL  L   
Sbjct: 167 QFDGVHDYRGIED-------FPKLNQLYAF 189

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 32/221 (14%), Positives = 66/221 (29%), Gaps = 36/221 (16%)

Query: 131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSS 190
               +    NLG   +       + L  ++    +  +++ L  +     NL+ L +  +
Sbjct: 16  PGLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLAGM-QFFTNLKELHLSHN 73

Query: 191 YIDHSPEDIWMMQKLMHLNFGS--ITLPAPPKNNSSPLKNLIF----ISALHPSSCTPDI 244
            I      +  + KL  L+     +       +    L  L      +            
Sbjct: 74  QI-SDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC--LSRLFLDNNELRDTDS------- 123

Query: 245 LGRLPNVQTLRISG----DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYK 300
           L  L N++ L I       +          L  L KLE L L       +++        
Sbjct: 124 LIHLKNLEILSIRNNKLKSIV--------MLGFLSKLEVLDLHGN----EITN--TGGLT 169

Query: 301 FPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLE 341
               +  + L+  + V +P+    EL     +K     ++ 
Sbjct: 170 RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS 210

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 39/216 (18%), Positives = 71/216 (32%), Gaps = 18/216 (8%)

Query: 135 HLRVLNLGSAVLDQYPPGL-ENLFYLKYLKLNIPSLKCLP--SLLCTLLNLQTLEMPSSY 191
            L  L+L    L        + L  L +L L     K L   SL   L  LQ L + +  
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160

Query: 192 -IDHSPEDIWM-MQKLMHLNFGSITLPAPPKNNSSPLKNLIF--ISALHPSSCTPDILGR 247
                    +  +  L  L   +  L +    +   ++N+    +            +  
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220

Query: 248 LPNVQTLRISG-DLSYYH-----SGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKF 301
             +V+ L +   DL  +H     +G + SL +      +K+ +E         ++     
Sbjct: 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-----FQVMKLLNQ 275

Query: 302 PPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQN 337
              L +L  S  +L   P    + L  L+ + L  N
Sbjct: 276 ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 13/160 (8%)

Query: 241 TPDILGRLPNVQTLRISGD--LSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSE 298
                    +++ + IS +  L    + V  +L +LH++    +     +  ++      
Sbjct: 46  QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR---IEKANNLLYINPEAFQN 102

Query: 299 YKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLER--KLACVGCSSFPQLK 356
               P+L  L +SNT +   P           +L ++ N  +    + + VG S   +  
Sbjct: 103 L---PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF--ESV 157

Query: 357 ILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEE 396
           IL L +   ++E    A    +L+ L L+    L +LP +
Sbjct: 158 ILWL-NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND 196

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 44/295 (14%), Positives = 95/295 (32%), Gaps = 20/295 (6%)

Query: 130 CKKFKHLRVLNLGSAVLDQYPPG--LENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEM 187
           C    +L+ L+L     D  P      N+  LK+L L+   L+    L    LN+  + +
Sbjct: 86  CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL 145

Query: 188 PSSYIDHSPED-----IWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIF--ISALHPSSC 240
                    ED      +  + L  +   +         +   + NL    I  +   + 
Sbjct: 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205

Query: 241 TPDILGRLPNVQTLRISGDLSYYHSGVS-KSLCQLHKLECLKLVNEGKMRQLSRMILSEY 299
               L  L  +QT     +L+  +   +  S  ++ +L     V    +  +      ++
Sbjct: 206 CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF 265

Query: 300 KFPP-------SLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSF 352
           +          +L+   + +           E   ++ +     +    R +  +  S  
Sbjct: 266 RDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT--RMVHMLCPSKI 323

Query: 353 PQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLE 407
                L   + L  +      G + +LE+LIL     L++L +       +  L+
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQ 377

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	478
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.93
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.91
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.91
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.9
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.89
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.89
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.88
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.87
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.86
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.86
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.84
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.83
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.83
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.82
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.82
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.82
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.81
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.79
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.79
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.79
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.78
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.78
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.78
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.78
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.78
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.77
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.75
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.74
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.74
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.73
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.73
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.73
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.72
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.72
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.7
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.69
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.69
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.69
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.67
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.66
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.66
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.65
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.65
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.63
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.62
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.6
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.59
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.57
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.55
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.54
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.54
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.52
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.52
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.51
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.51
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.5
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.49
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.49
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.48
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.47
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.45
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.45
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.41
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.4
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.39
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.37
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.35
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.34
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.31
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.28
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.27
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.26
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.26
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.23
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.21
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.17
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.16
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.16
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.1
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.09
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.04
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.0
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.99
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.96
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.95
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	98.93
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.79
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.78
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.69
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.68
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	98.67
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.66
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.59
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.55
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.49
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.43
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.39
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.25
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.14
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.13
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.07
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.91
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.78
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.65
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.56
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.45
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.36
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.19
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.1

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.95  E-value=3.1e-27  Score=239.02  Aligned_cols=277  Identities=19%  Similarity=0.170  Sum_probs=226.8

Q ss_pred             ccccCCCCeEeEEEecCCCCCcC-CccCCCCCCCceEeecCCCCCccchh-hhCCCCCcEEeCCCCcCccc-chhhhccc
Q 047959          127 ENFCKKFKHLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYIDHS-PEDIWMMQ  203 (478)
Q Consensus       127 ~~~~~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~l-p~~i~~l~  203 (478)
                      ...+.++++|++|+|++|.++.+ |..+.++++|++|++++|.+..+|.. +.++++|++|++++|.+..+ |..+..++
T Consensus        49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  128 (477)
T 2id5_A           49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY  128 (477)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence            45678899999999999998855 67799999999999999999988864 68899999999999988776 45688899


Q ss_pred             cCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCC-ccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEE
Q 047959          204 KLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLK  281 (478)
Q Consensus       204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~  281 (478)
                      +|++|++++|.+....+..+..+++|++|++.++. ... +..+.++++|+.|+++++  ......+..+..+++|+.|+
T Consensus       129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~  206 (477)
T 2id5_A          129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL--NINAIRDYSFKRLYRLKVLE  206 (477)
T ss_dssp             TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC--CCCEECTTCSCSCTTCCEEE
T ss_pred             cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC--cCcEeChhhcccCcccceee
Confidence            99999998887777777788999999999999988 443 345889999999999998  34444455788899999999


Q ss_pred             EEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEe
Q 047959          282 LVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLK  361 (478)
Q Consensus       282 l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~  361 (478)
                      ++++..+..+|.   .... ..+|+.|++++|.++......+..+++|+.|+|++|.+.......  +..+++|+.|+++
T Consensus       207 l~~~~~~~~~~~---~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~  280 (477)
T 2id5_A          207 ISHWPYLDTMTP---NCLY-GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM--LHELLRLQEIQLV  280 (477)
T ss_dssp             EECCTTCCEECT---TTTT-TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS--CTTCTTCCEEECC
T ss_pred             CCCCccccccCc---cccc-CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh--ccccccCCEEECC
Confidence            998777778887   6666 679999999999987665567899999999999999876443322  6788999999999


Q ss_pred             cCCCCCce-eeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          362 SMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       362 ~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      ++ .++.+ +..+..+++|+.|++++|......+..+..+++|+.|++++++
T Consensus       281 ~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          281 GG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             SS-CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             CC-ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence            95 56655 4556789999999999986444334467889999999999865

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.94  E-value=2.3e-27  Score=253.39  Aligned_cols=274  Identities=20%  Similarity=0.194  Sum_probs=157.0

Q ss_pred             cCCCCeEeEEEecCCCCC-cCCccCCCC---------------------------CCCceEeecCCCCC-ccchhhhCCC
Q 047959          130 CKKFKHLRVLNLGSAVLD-QYPPGLENL---------------------------FYLKYLKLNIPSLK-CLPSLLCTLL  180 (478)
Q Consensus       130 ~~~~~~L~~L~L~~~~l~-~lp~~~~~l---------------------------~~L~~L~l~~~~i~-~lp~~~~~l~  180 (478)
                      +..+++|++|++++|.++ .+|..+..+                           ++|++|++++|.+. .+|..+++++
T Consensus       339 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~  418 (768)
T 3rgz_A          339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS  418 (768)
T ss_dssp             HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred             HhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC
Confidence            466677777777777665 555554444                           34445555554444 4555555566


Q ss_pred             CCcEEeCCCCcCc-ccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEE
Q 047959          181 NLQTLEMPSSYID-HSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRIS  257 (478)
Q Consensus       181 ~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~  257 (478)
                      +|++|++++|.+. .+|..++.+++|++|++++|.+...+|..+..+++|++|++.+|.  +..+..++++++|+.|+++
T Consensus       419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~  498 (768)
T 3rgz_A          419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS  498 (768)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence            6666666666443 445555566666666665555555555555566666666666555  3455555666666666666


Q ss_pred             ecCCcchhhHHHhccCCCCCCEEEEEecCccc-ccCccccccccCCCCceEEEEEeecCCCCCcC---------------
Q 047959          258 GDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR-QLSRMILSEYKFPPSLTQLSLSNTELVEDPMP---------------  321 (478)
Q Consensus       258 ~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~-~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------------  321 (478)
                      +|  ...+.+|..++.+++|+.|++++ +.+. .+|.   .+.. +++|+.|++++|.+++..+.               
T Consensus       499 ~N--~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~---~l~~-l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~  571 (768)
T 3rgz_A          499 NN--RLTGEIPKWIGRLENLAILKLSN-NSFSGNIPA---ELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA  571 (768)
T ss_dssp             SS--CCCSCCCGGGGGCTTCCEEECCS-SCCEEECCG---GGGG-CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC
T ss_pred             CC--ccCCcCChHHhcCCCCCEEECCC-CcccCcCCH---HHcC-CCCCCEEECCCCccCCcCChHHhcccchhhhhccc
Confidence            65  34445555555666666666665 3333 5555   5555 66666666666654432222               


Q ss_pred             -------------------------------------------------------cccCCCCCCeEEEeeCcccCceeEE
Q 047959          322 -------------------------------------------------------TLEELPHLEVLKLKQNSYLERKLAC  346 (478)
Q Consensus       322 -------------------------------------------------------~l~~l~~L~~L~L~~~~~~~~~~~~  346 (478)
                                                                             .++.+++|+.|+|++|.+++..+..
T Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~  651 (768)
T 3rgz_A          572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE  651 (768)
T ss_dssp             SCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG
T ss_pred             cccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH
Confidence                                                                   1223445666666666665554433


Q ss_pred             eCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          347 VGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       347 ~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                        ++.+++|+.|+|+++.--..+|..++.+++|+.|++++|.....+|..+.++++|+.|++++|+
T Consensus       652 --l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          652 --IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             --GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred             --HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence              4566666666666643323566666666666666666666555666666666666666666553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=6.8e-27  Score=235.06  Aligned_cols=275  Identities=17%  Similarity=0.150  Sum_probs=191.8

Q ss_pred             cccCCCCeEeEEEecCCCCC-cC-CccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcc-cchh--hhc
Q 047959          128 NFCKKFKHLRVLNLGSAVLD-QY-PPGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDH-SPED--IWM  201 (478)
Q Consensus       128 ~~~~~~~~L~~L~L~~~~l~-~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~-lp~~--i~~  201 (478)
                      ..+.++++|++|++++|.+. .+ +..+.++++|++|++++|.+..+ |..++++++|++|++++|.+.. +|..  +..
T Consensus        48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  127 (455)
T 3v47_A           48 TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP  127 (455)
T ss_dssp             TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTT
T ss_pred             hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccC
Confidence            34566777777777777764 44 34467777777777777777644 5667777777777777776654 3333  666


Q ss_pred             cccCcEEEeeCCCCCCCCCCC-CCCCCCCcEeCcccCC--CCCccc----------------------------------
Q 047959          202 MQKLMHLNFGSITLPAPPKNN-SSPLKNLIFISALHPS--SCTPDI----------------------------------  244 (478)
Q Consensus       202 l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~--~~~~~~----------------------------------  244 (478)
                      +++|++|++++|.+....|.. +..+++|++|++.++.  ...+..                                  
T Consensus       128 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  207 (455)
T 3v47_A          128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN  207 (455)
T ss_dssp             CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCC
T ss_pred             cccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccc
Confidence            777777777666665555544 6677777777777665  222222                                  


Q ss_pred             cCCCCCCcEEEEEecCCcchhhHHHhcc---------------------------------------CCCCCCEEEEEec
Q 047959          245 LGRLPNVQTLRISGDLSYYHSGVSKSLC---------------------------------------QLHKLECLKLVNE  285 (478)
Q Consensus       245 l~~l~~L~~L~l~~~~~~~~~~l~~~l~---------------------------------------~~~~L~~L~l~~~  285 (478)
                      +..+++|+.|++++|  ...+..+..+.                                       ..++|+.|++++ 
T Consensus       208 ~~~~~~L~~L~Ls~n--~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-  284 (455)
T 3v47_A          208 PFKNTSITTLDLSGN--GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK-  284 (455)
T ss_dssp             TTTTCEEEEEECTTS--CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCS-
T ss_pred             ccccceeeeEecCCC--cccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecC-
Confidence            224467888888887  34333333221                                       125788888887 


Q ss_pred             Ccccc-cCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCC
Q 047959          286 GKMRQ-LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSML  364 (478)
Q Consensus       286 ~~l~~-~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  364 (478)
                      +.+.. .|.   .+.. +++|+.|++++|.+.+..+..++.+++|++|+|++|.+.+..+..  +..+++|++|+++++ 
T Consensus       285 n~l~~~~~~---~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~Ls~N-  357 (455)
T 3v47_A          285 SKIFALLKS---VFSH-FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM--FENLDKLEVLDLSYN-  357 (455)
T ss_dssp             SCCCEECTT---TTTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG--GTTCTTCCEEECCSS-
T ss_pred             ccccccchh---hccc-CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH--hcCcccCCEEECCCC-
Confidence            55554 455   6777 899999999999988777778899999999999988875543332  678899999999985 


Q ss_pred             CCCce-eeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          365 WLEEW-TMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       365 ~l~~l-~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      .++.+ +..+..+++|+.|++++|......+..+..+++|+.|++++|+
T Consensus       358 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence            56655 5567889999999999986544333456889999999998765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=1.8e-26  Score=227.21  Aligned_cols=278  Identities=17%  Similarity=0.206  Sum_probs=174.8

Q ss_pred             CCCCeeeec---------CccccCCCCeEeEEEecCCCCCcCCc-cCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEE
Q 047959          117 KSDHLALIH---------CENFCKKFKHLRVLNLGSAVLDQYPP-GLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTL  185 (478)
Q Consensus       117 ~~~~lr~l~---------~~~~~~~~~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L  185 (478)
                      ..+++|.++         +..++..+++|++|++++|.++.++. .++.+++|++|++++|.+..+| ..++++++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            446666662         45566889999999999999986654 6899999999999999999765 457899999999


Q ss_pred             eCCCCcCcccchhh-hccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcc
Q 047959          186 EMPSSYIDHSPEDI-WMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYY  263 (478)
Q Consensus       186 ~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~  263 (478)
                      ++++|.+..+|..+ .++++|++|++++|.+....+..+..+++|++|++.++. ...  .++.+++|+.|+++++.  .
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~--l  198 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNL--L  198 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSC--C
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeeccccc--c
Confidence            99999999998774 789999999998888776667778999999999999887 332  25556777777777663  1


Q ss_pred             hhhHHHhccCCCCCCEEEEEecCcccccCcc-----------------ccccccCCCCceEEEEEeecCCCCCcCcccCC
Q 047959          264 HSGVSKSLCQLHKLECLKLVNEGKMRQLSRM-----------------ILSEYKFPPSLTQLSLSNTELVEDPMPTLEEL  326 (478)
Q Consensus       264 ~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~-----------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l  326 (478)
                      .     .+...++|+.|++++ +.+..+|..                 ..++.. +++|+.|++++|.+.+..+..+..+
T Consensus       199 ~-----~~~~~~~L~~L~l~~-n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (390)
T 3o6n_A          199 S-----TLAIPIAVEELDASH-NSINVVRGPVNVELTILKLQHNNLTDTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKM  271 (390)
T ss_dssp             S-----EEECCSSCSEEECCS-SCCCEEECCCCSSCCEEECCSSCCCCCGGGGG-CTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             c-----ccCCCCcceEEECCC-CeeeeccccccccccEEECCCCCCcccHHHcC-CCCccEEECCCCcCCCcChhHcccc
Confidence            1     122334455555544 444433320                 003444 4555555555555444434444555


Q ss_pred             CCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEE
Q 047959          327 PHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKL  406 (478)
Q Consensus       327 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L  406 (478)
                      ++|+.|++++|.+.+..  .. ...+++|++|+++++ .++.+|.....+++|+.|++++|.. +.+|  +..+++|+.|
T Consensus       272 ~~L~~L~L~~n~l~~~~--~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i-~~~~--~~~~~~L~~L  344 (390)
T 3o6n_A          272 QRLERLYISNNRLVALN--LY-GQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNL  344 (390)
T ss_dssp             SSCCEEECCSSCCCEEE--CS-SSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCC-CCCC--CCTTCCCSEE
T ss_pred             ccCCEEECCCCcCcccC--cc-cCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCcc-ceeC--chhhccCCEE
Confidence            55555555554443321  11 334455555555553 3444444444455555555555442 2222  3445555555


Q ss_pred             EEecCc
Q 047959          407 ELHWPQ  412 (478)
Q Consensus       407 ~l~~c~  412 (478)
                      ++++++
T Consensus       345 ~l~~N~  350 (390)
T 3o6n_A          345 TLSHND  350 (390)
T ss_dssp             ECCSSC
T ss_pred             EcCCCC
Confidence            555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=5.4e-27  Score=245.03  Aligned_cols=269  Identities=15%  Similarity=0.188  Sum_probs=194.1

Q ss_pred             cccCCCCeEeEEEecCCCCCc------------------CCccCC--CCCCCceEeecCCCCC-ccchhhhCCCCCcEEe
Q 047959          128 NFCKKFKHLRVLNLGSAVLDQ------------------YPPGLE--NLFYLKYLKLNIPSLK-CLPSLLCTLLNLQTLE  186 (478)
Q Consensus       128 ~~~~~~~~L~~L~L~~~~l~~------------------lp~~~~--~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~  186 (478)
                      ..++++++|++|+|++|.++.                  +|..++  ++++|++|++++|.+. .+|..++++++|++|+
T Consensus       200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  279 (636)
T 4eco_A          200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN  279 (636)
T ss_dssp             GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred             HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence            346788999999999999886                  999988  9999999999999876 8898999999999999


Q ss_pred             CCCCc-Cc--ccchhhhcc------ccCcEEEeeCCCCCCCCCC--CCCCCCCCcEeCcccCC-C-CCccccCCCCCCcE
Q 047959          187 MPSSY-ID--HSPEDIWMM------QKLMHLNFGSITLPAPPKN--NSSPLKNLIFISALHPS-S-CTPDILGRLPNVQT  253 (478)
Q Consensus       187 l~~~~-l~--~lp~~i~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L~~  253 (478)
                      +++|. +.  .+|..++.+      ++|++|++++|.+. .+|.  .++.+++|++|++.++. . .++ .++.+++|+.
T Consensus       280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~  357 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS  357 (636)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred             CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence            99996 76  488888887      89999999888777 8888  78999999999999888 3 666 7888888889


Q ss_pred             EEEEecCCcchhhHHHhccCCCC-CCEEEEEecCcccccCccccccccCCC--CceEEEEEeecCCCCCcCccc------
Q 047959          254 LRISGDLSYYHSGVSKSLCQLHK-LECLKLVNEGKMRQLSRMILSEYKFPP--SLTQLSLSNTELVEDPMPTLE------  324 (478)
Q Consensus       254 L~l~~~~~~~~~~l~~~l~~~~~-L~~L~l~~~~~l~~~p~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~------  324 (478)
                      |++++|  ... .++..+..+++ |+.|++++ +.++.+|.   .+.. .+  +|+.|++++|.+.+..+..+.      
T Consensus       358 L~L~~N--~l~-~lp~~l~~l~~~L~~L~Ls~-N~l~~lp~---~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~  429 (636)
T 4eco_A          358 LNLAYN--QIT-EIPANFCGFTEQVENLSFAH-NKLKYIPN---IFDA-KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP  429 (636)
T ss_dssp             EECCSS--EEE-ECCTTSEEECTTCCEEECCS-SCCSSCCS---CCCT-TCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred             EECCCC--ccc-cccHhhhhhcccCcEEEccC-CcCcccch---hhhh-cccCccCEEECcCCcCCCcchhhhccccccc
Confidence            988887  233 66777888888 88888887 66777776   5554 33  667777777666554444444      


Q ss_pred             -CCCCCCeEEEeeCcccCceeEEeCCCCCc-------------------------------ccceeEEecCCCCCceeeC
Q 047959          325 -ELPHLEVLKLKQNSYLERKLACVGCSSFP-------------------------------QLKILHLKSMLWLEEWTMG  372 (478)
Q Consensus       325 -~l~~L~~L~L~~~~~~~~~~~~~~~~~~~-------------------------------~L~~L~L~~~~~l~~l~~~  372 (478)
                       .+++|+.|++++|.+.......  +..++                               +|+.|+++++ .++.+|..
T Consensus       430 ~~~~~L~~L~Ls~N~l~~lp~~~--~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~  506 (636)
T 4eco_A          430 FKGINVSSINLSNNQISKFPKEL--FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDD  506 (636)
T ss_dssp             CCCCCEEEEECCSSCCCSCCTHH--HHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGG
T ss_pred             ccCCCCCEEECcCCccCcCCHHH--HccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC-cCCccChh
Confidence             4445555555544443211000  11122                               6666666663 45556655


Q ss_pred             CC--cccccceeEEecCCCCCCCccccCCCCCCCEEEEec
Q 047959          373 AG--AMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHW  410 (478)
Q Consensus       373 ~~--~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  410 (478)
                      ..  .+++|+.|++++|.... +|..+.++++|+.|++++
T Consensus       507 ~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~  545 (636)
T 4eco_A          507 FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN  545 (636)
T ss_dssp             GSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCS
T ss_pred             hhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCC
Confidence            54  66777777777665433 666666677777777754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=9e-26  Score=228.27  Aligned_cols=270  Identities=17%  Similarity=0.139  Sum_probs=227.9

Q ss_pred             CeEeEEEecCCCCCcC-CccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEe
Q 047959          134 KHLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNF  210 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l  210 (478)
                      +.+++|+|++|.++.+ +..+.++++|++|++++|.+..+ |..+.++++|++|++++|.+..+|.. +.++++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            5789999999999966 45699999999999999999966 77899999999999999999999865 689999999999


Q ss_pred             eCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcc
Q 047959          211 GSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKM  288 (478)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l  288 (478)
                      ++|.+....+..+..+++|++|++.++.  ...+..+.++++|+.|++++|  ......+..+..+++|+.|++++ +.+
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~-n~i  188 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC--NLTSIPTEALSHLHGLIVLRLRH-LNI  188 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC--CCSSCCHHHHTTCTTCCEEEEES-CCC
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC--cCcccChhHhcccCCCcEEeCCC-CcC
Confidence            9888877778889999999999999987  444567899999999999998  44444556788999999999998 777


Q ss_pred             cccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCc
Q 047959          289 RQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEE  368 (478)
Q Consensus       289 ~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~  368 (478)
                      ..++..  .+.. +++|+.|++++|...+..+.......+|++|++++|.+.......  +..+++|+.|+++++ .++.
T Consensus       189 ~~~~~~--~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n-~l~~  262 (477)
T 2id5_A          189 NAIRDY--SFKR-LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA--VRHLVYLRFLNLSYN-PIST  262 (477)
T ss_dssp             CEECTT--CSCS-CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH--HTTCTTCCEEECCSS-CCCE
T ss_pred             cEeChh--hccc-CcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH--hcCccccCeeECCCC-cCCc
Confidence            766542  5677 999999999999876666666666779999999999887543222  678999999999995 5666


Q ss_pred             eee-CCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          369 WTM-GAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       369 l~~-~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      ++. .+..+++|+.|++++|......|..+..+++|+.|++++|.
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  307 (477)
T 2id5_A          263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ  307 (477)
T ss_dssp             ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred             cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence            654 35789999999999997666667888999999999999985

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=4.8e-26  Score=218.36  Aligned_cols=231  Identities=23%  Similarity=0.239  Sum_probs=184.7

Q ss_pred             CCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeC
Q 047959          133 FKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGS  212 (478)
Q Consensus       133 ~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~  212 (478)
                      ...++.|++++|.++.+|..++++++|++|++++|.+..+|..++++++|++|++++|.+..+|..++++++|++|++++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccC
Q 047959          213 ITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLS  292 (478)
Q Consensus       213 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p  292 (478)
                      |.....+|..+..      ..       ....                          +..+++|+.|++++ +.++.+|
T Consensus       160 n~~~~~~p~~~~~------~~-------~~~~--------------------------~~~l~~L~~L~L~~-n~l~~lp  199 (328)
T 4fcg_A          160 CPELTELPEPLAS------TD-------ASGE--------------------------HQGLVNLQSLRLEW-TGIRSLP  199 (328)
T ss_dssp             ETTCCCCCSCSEE------EC--------CCC--------------------------EEESTTCCEEEEEE-ECCCCCC
T ss_pred             CCCccccChhHhh------cc-------chhh--------------------------hccCCCCCEEECcC-CCcCcch
Confidence            7777667654432      11       0111                          23455566666665 5556677


Q ss_pred             ccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeC
Q 047959          293 RMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMG  372 (478)
Q Consensus       293 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~  372 (478)
                      .   .++. +++|+.|++++|.+++ .++.++.+++|++|++++|.+.+..+..  +..+++|++|++++|+....+|..
T Consensus       200 ~---~l~~-l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~~p~~  272 (328)
T 4fcg_A          200 A---SIAN-LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPI--FGGRAPLKRLILKDCSNLLTLPLD  272 (328)
T ss_dssp             G---GGGG-CTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCC--TTCCCCCCEEECTTCTTCCBCCTT
T ss_pred             H---hhcC-CCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHH--hcCCCCCCEEECCCCCchhhcchh
Confidence            6   6777 7778888888777654 4446777788888888877776655443  677888888888888777888888


Q ss_pred             CCcccccceeEEecCCCCCCCccccCCCCCCCEEEEec
Q 047959          373 AGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHW  410 (478)
Q Consensus       373 ~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  410 (478)
                      .+.+++|+.|++++|+.++.+|..+.++++|+.+++..
T Consensus       273 ~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            88899999999999999999999999999999998865

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=7e-27  Score=249.64  Aligned_cols=272  Identities=19%  Similarity=0.170  Sum_probs=215.3

Q ss_pred             CCCeEeEEEecCCCCC-cCCccCCCC-CCCceEeecCCCCC-ccchhhhCCCCCcEEeCCCCcCc-ccchh-hhccccCc
Q 047959          132 KFKHLRVLNLGSAVLD-QYPPGLENL-FYLKYLKLNIPSLK-CLPSLLCTLLNLQTLEMPSSYID-HSPED-IWMMQKLM  206 (478)
Q Consensus       132 ~~~~L~~L~L~~~~l~-~lp~~~~~l-~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~-i~~l~~L~  206 (478)
                      .+++|++|++++|.++ .+|..+... ++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|.. +.++++|+
T Consensus       267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~  346 (768)
T 3rgz_A          267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK  346 (768)
T ss_dssp             CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred             ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence            4455555555555555 666666554 77777777777777 67777778888888888888664 67755 77788888


Q ss_pred             EEEeeCCCCCCCCCCCCCCCC-CCcEeCcccCC--CCCccccCC--CCCCcEEEEEecCCcchhhHHHhccCCCCCCEEE
Q 047959          207 HLNFGSITLPAPPKNNSSPLK-NLIFISALHPS--SCTPDILGR--LPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLK  281 (478)
Q Consensus       207 ~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~--~~~~~~l~~--l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~  281 (478)
                      +|++++|.+...+|..+..++ +|++|++.++.  +..+..+..  +++|+.|++++|  ...+.++..+..+++|+.|+
T Consensus       347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~  424 (768)
T 3rgz_A          347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN--GFTGKIPPTLSNCSELVSLH  424 (768)
T ss_dssp             EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS--EEEEECCGGGGGCTTCCEEE
T ss_pred             EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC--ccccccCHHHhcCCCCCEEE
Confidence            888877766667777777766 78888887776  445555555  778899998888  56667788888999999999


Q ss_pred             EEecCccc-ccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEE
Q 047959          282 LVNEGKMR-QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHL  360 (478)
Q Consensus       282 l~~~~~l~-~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L  360 (478)
                      +++ +.+. .+|.   .++. +++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+..  +..+++|++|++
T Consensus       425 Ls~-N~l~~~~p~---~l~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~L  497 (768)
T 3rgz_A          425 LSF-NYLSGTIPS---SLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG--LSNCTNLNWISL  497 (768)
T ss_dssp             CCS-SEEESCCCG---GGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEEC
T ss_pred             CcC-CcccCcccH---HHhc-CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH--HhcCCCCCEEEc
Confidence            998 5555 6777   8888 899999999999998888888999999999999999888766544  678899999999


Q ss_pred             ecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          361 KSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       361 ~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      ++|.-...+|..++.+++|+.|++++|.....+|..+..+++|+.|++++|+
T Consensus       498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            9975444788888899999999999998877899999999999999999875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=4.1e-26  Score=243.01  Aligned_cols=159  Identities=16%  Similarity=0.242  Sum_probs=107.4

Q ss_pred             ccCCCCeEeEEEecCCCCCc------------------CCccCC--CCCCCceEeecCCCCC-ccchhhhCCCCCcEEeC
Q 047959          129 FCKKFKHLRVLNLGSAVLDQ------------------YPPGLE--NLFYLKYLKLNIPSLK-CLPSLLCTLLNLQTLEM  187 (478)
Q Consensus       129 ~~~~~~~L~~L~L~~~~l~~------------------lp~~~~--~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l  187 (478)
                      .+.++++|++|+|++|.++.                  +|..++  ++++|++|++++|.+. .+|..++++++|++|++
T Consensus       443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI  522 (876)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred             HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence            34667777777777777765                  777766  7777777777777654 67777777777777777


Q ss_pred             CCCc-Ccc--cchhhhccc-------cCcEEEeeCCCCCCCCCC--CCCCCCCCcEeCcccCC-CCCccccCCCCCCcEE
Q 047959          188 PSSY-IDH--SPEDIWMMQ-------KLMHLNFGSITLPAPPKN--NSSPLKNLIFISALHPS-SCTPDILGRLPNVQTL  254 (478)
Q Consensus       188 ~~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L  254 (478)
                      ++|. +..  +|..+++++       +|++|++++|.+. .+|.  .++++++|+.|++.++. ..++ .++.+++|+.|
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L  600 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDL  600 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEE
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEE
Confidence            7775 653  676666665       7777777666665 6666  67777777777777766 5444 66677777777


Q ss_pred             EEEecCCcchhhHHHhccCCCC-CCEEEEEecCcccccCc
Q 047959          255 RISGDLSYYHSGVSKSLCQLHK-LECLKLVNEGKMRQLSR  293 (478)
Q Consensus       255 ~l~~~~~~~~~~l~~~l~~~~~-L~~L~l~~~~~l~~~p~  293 (478)
                      ++++|.  .. .++..+..+++ |+.|++++ +.++.+|.
T Consensus       601 ~Ls~N~--l~-~lp~~l~~l~~~L~~L~Ls~-N~L~~lp~  636 (876)
T 4ecn_A          601 KLDYNQ--IE-EIPEDFCAFTDQVEGLGFSH-NKLKYIPN  636 (876)
T ss_dssp             ECCSSC--CS-CCCTTSCEECTTCCEEECCS-SCCCSCCS
T ss_pred             ECcCCc--cc-cchHHHhhccccCCEEECcC-CCCCcCch
Confidence            777662  22 55555666666 67776665 55555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=9e-27  Score=243.31  Aligned_cols=270  Identities=17%  Similarity=0.192  Sum_probs=161.6

Q ss_pred             CCCCeEeEEEecCCC-CC--cCCccCCCC------CCCceEeecCCCCCccch--hhhCCCCCcEEeCCCCcCc-ccchh
Q 047959          131 KKFKHLRVLNLGSAV-LD--QYPPGLENL------FYLKYLKLNIPSLKCLPS--LLCTLLNLQTLEMPSSYID-HSPED  198 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~-l~--~lp~~~~~l------~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~-~lp~~  198 (478)
                      .++++|++|++++|. ++  .+|..++.+      ++|++|++++|.++.+|.  .++++++|++|++++|.+. .+| .
T Consensus       270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~  348 (636)
T 4eco_A          270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A  348 (636)
T ss_dssp             TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred             hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence            444455555555554 44  244444433      455555555555555554  4555555555555555444 444 4


Q ss_pred             hhccccCcEEEeeCCCCCCCCCCCCCCCCC-CcEeCcccCC-CCCccccCCCC--CCcEEEEEecCCcchhhHHHhcc--
Q 047959          199 IWMMQKLMHLNFGSITLPAPPKNNSSPLKN-LIFISALHPS-SCTPDILGRLP--NVQTLRISGDLSYYHSGVSKSLC--  272 (478)
Q Consensus       199 i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~-~~~~~~l~~l~--~L~~L~l~~~~~~~~~~l~~~l~--  272 (478)
                      ++.+++|++|++++|.+. .+|..+..+++ |++|++.++. ..++..+..++  +|+.|++++|  ...+..+..+.  
T Consensus       349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~~  425 (636)
T 4eco_A          349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN--EIGSVDGKNFDPL  425 (636)
T ss_dssp             CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSS--CTTTTTTCSSCTT
T ss_pred             hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCC--cCCCcchhhhccc
Confidence            445555555555444333 45555555555 6666666655 44444444433  5666666666  34444444455  


Q ss_pred             -----CCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCC-------CCCCeEEEeeCccc
Q 047959          273 -----QLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEEL-------PHLEVLKLKQNSYL  340 (478)
Q Consensus       273 -----~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l-------~~L~~L~L~~~~~~  340 (478)
                           .+++|+.|++++ +.++.+|.   .+...+++|+.|++++|.++......+...       ++|+.|+|++|.+.
T Consensus       426 ~~~~~~~~~L~~L~Ls~-N~l~~lp~---~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  501 (636)
T 4eco_A          426 DPTPFKGINVSSINLSN-NQISKFPK---ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT  501 (636)
T ss_dssp             CSSCCCCCCEEEEECCS-SCCCSCCT---HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred             ccccccCCCCCEEECcC-CccCcCCH---HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC
Confidence                 556777777776 66666765   433226778888888877763332233222       37888888887776


Q ss_pred             CceeEEeCCC--CCcccceeEEecCCCCCceeeCCCcccccceeEEec------CCCCCCCccccCCCCCCCEEEEecCc
Q 047959          341 ERKLACVGCS--SFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNP------CAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       341 ~~~~~~~~~~--~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~------c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      . .+..  +.  .+++|+.|+++++ .++.+|.....+++|+.|++++      |...+.+|..+..+++|+.|++++|.
T Consensus       502 ~-lp~~--~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  577 (636)
T 4eco_A          502 K-LSDD--FRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND  577 (636)
T ss_dssp             B-CCGG--GSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred             c-cChh--hhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence            2 2222  33  7888888888884 6667887788888888888854      55566788888888888888888886

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=2.2e-25  Score=215.81  Aligned_cols=260  Identities=19%  Similarity=0.243  Sum_probs=194.1

Q ss_pred             cCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEE
Q 047959          130 CKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLN  209 (478)
Q Consensus       130 ~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  209 (478)
                      +..+++|++|++++|.++.++. +..+++|++|++++|.+..+| .+..+++|++|++++|.+..++. +..+++|++|+
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~  138 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLN  138 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEE
T ss_pred             hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEE
Confidence            4668888888888888887776 888888888888888888775 57888888888888888888876 78888888888


Q ss_pred             eeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcc
Q 047959          210 FGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKM  288 (478)
Q Consensus       210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l  288 (478)
                      +++|......+ .+..+++|++|++.++. ...+ .+..+++|+.|++++|.  .. .++. +..+++|+.|++++ +.+
T Consensus       139 l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~--l~-~~~~-~~~l~~L~~L~l~~-n~l  211 (347)
T 4fmz_A          139 LGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVT-PIANLTDLYSLSLNYNQ--IE-DISP-LASLTSLHYFTAYV-NQI  211 (347)
T ss_dssp             CTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECTTSC--CC-CCGG-GGGCTTCCEEECCS-SCC
T ss_pred             CCCCCCccccc-chhhCCCCcEEEecCCCcCCch-hhccCCCCCEEEccCCc--cc-cccc-ccCCCccceeeccc-CCC
Confidence            86665444443 47888888888888887 3332 37788888888888873  22 2222 66778888888887 666


Q ss_pred             cccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCc
Q 047959          289 RQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEE  368 (478)
Q Consensus       289 ~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~  368 (478)
                      ..++    .+.. +++|+.|++++|.++....  +..+++|++|++++|.+....   . +..+++|++|++++| .++.
T Consensus       212 ~~~~----~~~~-~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~-~~~l~~L~~L~l~~n-~l~~  279 (347)
T 4fmz_A          212 TDIT----PVAN-MTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN---A-VKDLTKLKMLNVGSN-QISD  279 (347)
T ss_dssp             CCCG----GGGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSS-CCCC
T ss_pred             CCCc----hhhc-CCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh---h-HhcCCCcCEEEccCC-ccCC
Confidence            6655    3555 7888888888887755332  778888888888888776531   1 567888888888875 5666


Q ss_pred             eeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          369 WTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       369 l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      ++ ....+++|+.|++++|......|..+..+++|+.|++++|+
T Consensus       280 ~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          280 IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence            53 35677888888888887655566667778888888888876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.2e-25  Score=233.45  Aligned_cols=270  Identities=18%  Similarity=0.203  Sum_probs=205.7

Q ss_pred             CccccCCCCeEeEEEecCCCCCcCCc-cCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccchhh-hcc
Q 047959          126 CENFCKKFKHLRVLNLGSAVLDQYPP-GLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPEDI-WMM  202 (478)
Q Consensus       126 ~~~~~~~~~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~i-~~l  202 (478)
                      +..++..+++|++|++++|.++.++. .++.+++|++|++++|.+..+|+ .++++++|++|++++|.+..+|..+ +.+
T Consensus        67 p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l  146 (597)
T 3oja_B           67 PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT  146 (597)
T ss_dssp             CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccC
Confidence            45566889999999999999986654 69999999999999999997765 4689999999999999999998764 899


Q ss_pred             ccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCc----------------chh
Q 047959          203 QKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSY----------------YHS  265 (478)
Q Consensus       203 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~----------------~~~  265 (478)
                      ++|++|++++|.+....|..++.+++|++|++.++. ...  .++.+++|+.|+++++.-.                ...
T Consensus       147 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~  224 (597)
T 3oja_B          147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN  224 (597)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCC
T ss_pred             CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--ChhhhhhhhhhhcccCccccccCCchhheeeccCCccc
Confidence            999999998888877777789999999999999987 332  2445666666666655200                000


Q ss_pred             hHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeE
Q 047959          266 GVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLA  345 (478)
Q Consensus       266 ~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~  345 (478)
                      .++.  ...++|+.|++++ +.++..+    ++.. +++|+.|++++|.+.+..+..++.+++|+.|+|++|.+.+.  .
T Consensus       225 ~~~~--~~~~~L~~L~L~~-n~l~~~~----~l~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~  294 (597)
T 3oja_B          225 VVRG--PVNVELTILKLQH-NNLTDTA----WLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--N  294 (597)
T ss_dssp             EEEC--SCCSCCCEEECCS-SCCCCCG----GGGG-CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE--E
T ss_pred             cccc--ccCCCCCEEECCC-CCCCCCh----hhcc-CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC--C
Confidence            0111  1124677777766 5555543    6777 88888888888888777777888888888888888877653  2


Q ss_pred             EeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          346 CVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       346 ~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      .. ...+++|+.|+|++| .+..+|.....+++|+.|++++|.. ..+|  +..+++|+.|++++|+
T Consensus       295 ~~-~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l-~~~~--~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          295 LY-GQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             CS-SSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCC-CCCC--CCTTCCCSEEECCSSC
T ss_pred             cc-cccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCC-CCcC--hhhcCCCCEEEeeCCC
Confidence            22 566888888888884 6677777777888899999988864 3443  5678899999999887

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=2.9e-25  Score=215.05  Aligned_cols=272  Identities=17%  Similarity=0.196  Sum_probs=220.3

Q ss_pred             CCCCeeeec-------CccccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCC
Q 047959          117 KSDHLALIH-------CENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPS  189 (478)
Q Consensus       117 ~~~~lr~l~-------~~~~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~  189 (478)
                      .+++|+.|+       .-..+..+++|++|++++|.++.++ .+..+++|++|++++|.+..+|. +..+++|++|++++
T Consensus        64 ~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~  141 (347)
T 4fmz_A           64 YLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGA  141 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTT
T ss_pred             hcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCC
Confidence            467777772       1112789999999999999998876 48999999999999999998886 88999999999999


Q ss_pred             C-cCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhH
Q 047959          190 S-YIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGV  267 (478)
Q Consensus       190 ~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l  267 (478)
                      | .+..++ .+..+++|++|++++|......+  +..+++|++|++.++. ...+. +..+++|+.|+++++.  .....
T Consensus       142 n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~--l~~~~  215 (347)
T 4fmz_A          142 NHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQ--ITDIT  215 (347)
T ss_dssp             CTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSC--CCCCG
T ss_pred             CCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCC--CCCCc
Confidence            9 555554 48999999999997776543332  7889999999999998 44433 8899999999999984  22222


Q ss_pred             HHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEe
Q 047959          268 SKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACV  347 (478)
Q Consensus       268 ~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~  347 (478)
                      +  +..+++|+.|++++ +.++.+|    .+.. +++|+.|++++|.++.  .+.+..+++|+.|++++|.+.+..   .
T Consensus       216 ~--~~~~~~L~~L~l~~-n~l~~~~----~~~~-l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~l~~n~l~~~~---~  282 (347)
T 4fmz_A          216 P--VANMTRLNSLKIGN-NKITDLS----PLAN-LSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDIS---V  282 (347)
T ss_dssp             G--GGGCTTCCEEECCS-SCCCCCG----GGTT-CTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCCCG---G
T ss_pred             h--hhcCCcCCEEEccC-CccCCCc----chhc-CCCCCEEECCCCccCC--ChhHhcCCCcCEEEccCCccCCCh---h
Confidence            2  77899999999998 7788777    4666 8999999999998865  367889999999999999887642   2


Q ss_pred             CCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          348 GCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       348 ~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                       +..+++|+.|++++|.-....+...+.+++|+.|++++|+.. .++. +..+++|+.|++++|+
T Consensus       283 -~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          283 -LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT-DIRP-LASLSKMDSADFANQV  344 (347)
T ss_dssp             -GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC-CCGG-GGGCTTCSEESSSCC-
T ss_pred             -hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc-cccC-hhhhhccceeehhhhc
Confidence             678999999999997433344455678999999999999854 4444 7889999999999987

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=1.5e-25  Score=233.59  Aligned_cols=87  Identities=20%  Similarity=0.286  Sum_probs=54.9

Q ss_pred             cccCCCCeEeEEEecCCCCCcC-CccCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCc--ccchhhhccc
Q 047959          128 NFCKKFKHLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYID--HSPEDIWMMQ  203 (478)
Q Consensus       128 ~~~~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~--~lp~~i~~l~  203 (478)
                      ..+.++++|++|++++|.++.+ |..++++++|++|++++|.+..+| ..++++++|++|++++|.+.  .+|..+++++
T Consensus        74 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~  153 (606)
T 3vq2_A           74 KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT  153 (606)
T ss_dssp             TTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT
T ss_pred             HHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC
Confidence            3456666777777777766644 555666666777777666666544 45666666666666666554  3566666666


Q ss_pred             cCcEEEeeCCC
Q 047959          204 KLMHLNFGSIT  214 (478)
Q Consensus       204 ~L~~L~l~~~~  214 (478)
                      +|++|++++|.
T Consensus       154 ~L~~L~Ls~n~  164 (606)
T 3vq2_A          154 NLVHVDLSYNY  164 (606)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEccCCc
Confidence            66666665553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=2.9e-25  Score=227.10  Aligned_cols=131  Identities=18%  Similarity=0.191  Sum_probs=66.6

Q ss_pred             cCCCCCCEEEEEecCcccc-cCccccccccCCCCceEEEEEeecCCC--CCcCcccCCCCCCeEEEeeCcccCceeEEeC
Q 047959          272 CQLHKLECLKLVNEGKMRQ-LSRMILSEYKFPPSLTQLSLSNTELVE--DPMPTLEELPHLEVLKLKQNSYLERKLACVG  348 (478)
Q Consensus       272 ~~~~~L~~L~l~~~~~l~~-~p~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~  348 (478)
                      ..+++|+.|++++ +.++. +|.   ++.. +++|+.|++++|.+++  ..+..++.+++|++|++++|.+.+..+... 
T Consensus       321 ~~l~~L~~L~Ls~-n~l~~~~~~---~~~~-l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~-  394 (520)
T 2z7x_B          321 SKISPFLHLDFSN-NLLTDTVFE---NCGH-LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD-  394 (520)
T ss_dssp             SSCCCCCEEECCS-SCCCTTTTT---TCCC-CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS-
T ss_pred             hhCCcccEEEeEC-CccChhhhh---hhcc-CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch-
Confidence            4566777777776 44443 555   6666 6777777777776654  223345666677777776666654222111 


Q ss_pred             CCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecC
Q 047959          349 CSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWP  411 (478)
Q Consensus       349 ~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c  411 (478)
                      +..+++|++|+++++.--...+....  ++|+.|++++|. ++.+|..+..+++|+.|++++|
T Consensus       395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N  454 (520)
T 2z7x_B          395 CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN  454 (520)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS
T ss_pred             hccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC
Confidence            33445555555555321112221111  344555554442 2344444444444555544444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=2.2e-25  Score=237.44  Aligned_cols=283  Identities=14%  Similarity=0.166  Sum_probs=204.2

Q ss_pred             CCCCeeeec---------CccccCCCCeEeEEEecCCC-CC--cCCccCCCCC-------CCceEeecCCCCCccch--h
Q 047959          117 KSDHLALIH---------CENFCKKFKHLRVLNLGSAV-LD--QYPPGLENLF-------YLKYLKLNIPSLKCLPS--L  175 (478)
Q Consensus       117 ~~~~lr~l~---------~~~~~~~~~~L~~L~L~~~~-l~--~lp~~~~~l~-------~L~~L~l~~~~i~~lp~--~  175 (478)
                      .+++|+.|+         ....+.++++|+.|++++|. ++  .+|..++.+.       +|++|++++|.+..+|.  .
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~  568 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS  568 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence            467777772         23456788899999999997 77  3776555544       99999999999999988  8


Q ss_pred             hhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCC-CcEeCcccCC-CCCccccCCCCC--C
Q 047959          176 LCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKN-LIFISALHPS-SCTPDILGRLPN--V  251 (478)
Q Consensus       176 ~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~-~~~~~~l~~l~~--L  251 (478)
                      ++++++|++|++++|.+..+| .++.+++|++|++++|.+. .+|..+..+++ |+.|++.+|. ..++..+..++.  |
T Consensus       569 l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L  646 (876)
T 4ecn_A          569 LQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM  646 (876)
T ss_dssp             HTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred             hhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence            899999999999999888888 7888999999999888776 78888888888 9999998888 666666666544  8


Q ss_pred             cEEEEEecCCcchhhHH---Hhcc--CCCCCCEEEEEecCcccccCccccccc-cCCCCceEEEEEeecCCCCCcCccc-
Q 047959          252 QTLRISGDLSYYHSGVS---KSLC--QLHKLECLKLVNEGKMRQLSRMILSEY-KFPPSLTQLSLSNTELVEDPMPTLE-  324 (478)
Q Consensus       252 ~~L~l~~~~~~~~~~l~---~~l~--~~~~L~~L~l~~~~~l~~~p~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~-  324 (478)
                      +.|++++|.  ..+.++   ..+.  .+++|+.|++++ +.+..+|.   .+. . +++|+.|++++|.+.......+. 
T Consensus       647 ~~L~Ls~N~--l~g~ip~l~~~l~~~~~~~L~~L~Ls~-N~L~~lp~---~~~~~-l~~L~~L~Ls~N~L~~ip~~~~~~  719 (876)
T 4ecn_A          647 GSVDFSYNK--IGSEGRNISCSMDDYKGINASTVTLSY-NEIQKFPT---ELFAT-GSPISTIILSNNLMTSIPENSLKP  719 (876)
T ss_dssp             EEEECCSSC--TTTTSSSCSSCTTTCCCCCEEEEECCS-SCCCSCCH---HHHHT-TCCCSEEECCSCCCSCCCTTSSSC
T ss_pred             CEEECcCCc--CCCccccchhhhccccCCCcCEEEccC-CcCCccCH---HHHcc-CCCCCEEECCCCcCCccChHHhcc
Confidence            888888873  322222   1222  334778888876 66777776   544 4 77888888888876632222222 


Q ss_pred             ------CCCCCCeEEEeeCcccCceeEEeCCC--CCcccceeEEecCCCCCceeeCCCcccccceeEEec------CCCC
Q 047959          325 ------ELPHLEVLKLKQNSYLERKLACVGCS--SFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNP------CAYL  390 (478)
Q Consensus       325 ------~l~~L~~L~L~~~~~~~~~~~~~~~~--~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~------c~~l  390 (478)
                            ++++|+.|+|++|.+.. .+..  +.  .+++|+.|+|+++ .++.+|.....+++|+.|++++      |...
T Consensus       720 ~~~~l~nl~~L~~L~Ls~N~L~~-lp~~--l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~  795 (876)
T 4ecn_A          720 KDGNYKNTYLLTTIDLRFNKLTS-LSDD--FRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRIL  795 (876)
T ss_dssp             TTSCCTTGGGCCEEECCSSCCCC-CCGG--GSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred             ccccccccCCccEEECCCCCCcc-chHH--hhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCccccccc
Confidence                  23378888888777762 2221  33  6778888888774 5666777777778888888866      4445


Q ss_pred             CCCccccCCCCCCCEEEEecCc
Q 047959          391 RKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       391 ~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      ..+|..+.++++|+.|++++|.
T Consensus       796 ~~ip~~l~~L~~L~~L~Ls~N~  817 (876)
T 4ecn_A          796 RQWPTGITTCPSLIQLQIGSND  817 (876)
T ss_dssp             CCCCTTGGGCSSCCEEECCSSC
T ss_pred             ccChHHHhcCCCCCEEECCCCC
Confidence            6677777778888888887776

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.93  E-value=8.2e-26  Score=235.54  Aligned_cols=270  Identities=19%  Similarity=0.158  Sum_probs=195.0

Q ss_pred             eEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCccc-chhhhccccCcEEEeeC
Q 047959          135 HLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHS-PEDIWMMQKLMHLNFGS  212 (478)
Q Consensus       135 ~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~  212 (478)
                      .|+.|++++|.++.++.. ++.+++|++|++++|.++.+|..+..+++|++|++++|.+..+ |..+..+++|++|++++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  334 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG  334 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence            688888888888766555 7788888888888888888888888888888888888877766 45677888888888877


Q ss_pred             CCCCCCCCCC-CCCCCCCcEeCcccCC-CCC---ccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCc
Q 047959          213 ITLPAPPKNN-SSPLKNLIFISALHPS-SCT---PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGK  287 (478)
Q Consensus       213 ~~~~~~~~~~-~~~l~~L~~L~l~~~~-~~~---~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~  287 (478)
                      |.....+|.. +..+++|++|++.++. ...   +..++.+++|++|++++|  ...+..+..+..+++|+.|++++ +.
T Consensus       335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~-n~  411 (606)
T 3t6q_A          335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN--EPLSLKTEAFKECPQLELLDLAF-TR  411 (606)
T ss_dssp             CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC--SCEEECTTTTTTCTTCSEEECTT-CC
T ss_pred             CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC--cCCcCCHHHhcCCccCCeEECCC-Cc
Confidence            7666555544 7788888888888776 222   556778888888888887  34445566677788888888876 55


Q ss_pred             cccc-CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEE-eCCCCCcccceeEEecCCC
Q 047959          288 MRQL-SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLAC-VGCSSFPQLKILHLKSMLW  365 (478)
Q Consensus       288 l~~~-p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~  365 (478)
                      +... |..  .+.. +++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+.. ..+..+++|++|++++| .
T Consensus       412 l~~~~~~~--~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~  487 (606)
T 3t6q_A          412 LKVKDAQS--PFQN-LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-D  487 (606)
T ss_dssp             EECCTTCC--TTTT-CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-C
T ss_pred             CCCcccch--hhhC-cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-c
Confidence            5433 220  3666 788888888888877766777778888888888887776543221 11566778888888875 4


Q ss_pred             CCce-eeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          366 LEEW-TMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       366 l~~l-~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      ++.+ |..++.+++|+.|++++|......|..+.++++| .|++++|.
T Consensus       488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~  534 (606)
T 3t6q_A          488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH  534 (606)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred             cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence            5544 4556677888888888876666666677777777 77777764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.93  E-value=6.5e-25  Score=226.51  Aligned_cols=97  Identities=16%  Similarity=0.172  Sum_probs=78.0

Q ss_pred             CCeeeec---------CccccCCCCeEeEEEecCCCCCcC-CccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCC
Q 047959          119 DHLALIH---------CENFCKKFKHLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMP  188 (478)
Q Consensus       119 ~~lr~l~---------~~~~~~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~  188 (478)
                      ++++.|+         ....+..+++|++|++++|.++.+ |..++++++|++|++++|.++.+|..  .+++|++|+++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS  129 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence            5666662         235668888999999999998855 56688899999999999998888876  78899999999


Q ss_pred             CCcCcccc--hhhhccccCcEEEeeCCCCCC
Q 047959          189 SSYIDHSP--EDIWMMQKLMHLNFGSITLPA  217 (478)
Q Consensus       189 ~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~  217 (478)
                      +|.+..+|  ..++++++|++|++++|.+..
T Consensus       130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             SSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             CCCccccCchHhhcccCcccEEecCCCcccc
Confidence            99887764  678889999999998876543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.93  E-value=4.3e-25  Score=230.10  Aligned_cols=276  Identities=17%  Similarity=0.153  Sum_probs=229.9

Q ss_pred             ccccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCc-ccchh-hhccc
Q 047959          127 ENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYID-HSPED-IWMMQ  203 (478)
Q Consensus       127 ~~~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~-~lp~~-i~~l~  203 (478)
                      ...+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+ |..+..+++|++|++++|.+. .+|.. +..++
T Consensus       271 ~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  350 (606)
T 3t6q_A          271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE  350 (606)
T ss_dssp             TTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred             HHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence            4557889999999999999999999999999999999999999966 568999999999999999664 67654 88999


Q ss_pred             cCcEEEeeCCCCCCCC--CCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHH-HhccCCCCCC
Q 047959          204 KLMHLNFGSITLPAPP--KNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVS-KSLCQLHKLE  278 (478)
Q Consensus       204 ~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~~~~L~  278 (478)
                      +|++|++++|.+....  +..+..+++|++|++.++.  ...+..++.+++|+.|++++|.  .....+ ..+..+++|+
T Consensus       351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~  428 (606)
T 3t6q_A          351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR--LKVKDAQSPFQNLHLLK  428 (606)
T ss_dssp             TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC--EECCTTCCTTTTCTTCC
T ss_pred             cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc--CCCcccchhhhCcccCC
Confidence            9999999888776544  7789999999999999998  5556788999999999999983  333333 3478899999


Q ss_pred             EEEEEecCcccc-cCccccccccCCCCceEEEEEeecCCCC---CcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcc
Q 047959          279 CLKLVNEGKMRQ-LSRMILSEYKFPPSLTQLSLSNTELVED---PMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQ  354 (478)
Q Consensus       279 ~L~l~~~~~l~~-~p~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~  354 (478)
                      .|++++ +.+.. .|.   .+.. +++|+.|++++|.+.+.   ....++.+++|++|++++|.+.+..+..  +..+++
T Consensus       429 ~L~l~~-n~l~~~~~~---~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~  501 (606)
T 3t6q_A          429 VLNLSH-SLLDISSEQ---LFDG-LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA--FTSLKM  501 (606)
T ss_dssp             EEECTT-CCCBTTCTT---TTTT-CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT--TTTCTT
T ss_pred             EEECCC-CccCCcCHH---HHhC-CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh--hccccC
Confidence            999998 66654 455   7788 99999999999998763   2356889999999999999887554333  788999


Q ss_pred             cceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          355 LKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       355 L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      |++|+++++.-....+.....+++| .|++++|......|..+..+++|+.|++++||
T Consensus       502 L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          502 MNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP  558 (606)
T ss_dssp             CCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred             CCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence            9999999964333455667788999 99999998776677778889999999999876

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=1.6e-25  Score=233.31  Aligned_cols=112  Identities=18%  Similarity=0.167  Sum_probs=99.8

Q ss_pred             ccccCCCCeEeEEEecCCCCCcC-CccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccc-hhhhccc
Q 047959          127 ENFCKKFKHLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSP-EDIWMMQ  203 (478)
Q Consensus       127 ~~~~~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~  203 (478)
                      ...+.++++|++|++++|.++.+ |..++++++|++|++++|.+..+ |..++++++|++|++++|.+..++ ..+++++
T Consensus        49 ~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  128 (606)
T 3vq2_A           49 SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI  128 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred             hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence            44678999999999999999966 56699999999999999999976 788999999999999999998887 6789999


Q ss_pred             cCcEEEeeCCCCCC-CCCCCCCCCCCCcEeCcccCC
Q 047959          204 KLMHLNFGSITLPA-PPKNNSSPLKNLIFISALHPS  238 (478)
Q Consensus       204 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~  238 (478)
                      +|++|++++|.+.. .+|..++++++|++|++.++.
T Consensus       129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A          129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred             CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence            99999998888765 678889999999999988775

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=4e-26  Score=229.47  Aligned_cols=273  Identities=15%  Similarity=0.135  Sum_probs=214.1

Q ss_pred             cCCCCeEeEEEecCCCCCcC-CccCCCCCCCceEeecCCCCC-cc-chhhhCCCCCcEEeCCCCcCccc-chhhhccccC
Q 047959          130 CKKFKHLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPSLK-CL-PSLLCTLLNLQTLEMPSSYIDHS-PEDIWMMQKL  205 (478)
Q Consensus       130 ~~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~i~-~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L  205 (478)
                      +.-.++|++|++++|.++.+ |..++++++|++|++++|.+. .+ |..+.++++|++|++++|.+..+ |..++++++|
T Consensus        26 p~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  105 (455)
T 3v47_A           26 PELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL  105 (455)
T ss_dssp             CCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred             CCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccC
Confidence            33347899999999999955 777999999999999999987 55 45689999999999999988776 7789999999


Q ss_pred             cEEEeeCCCCCCCCCCC--CCCCCCCcEeCcccCC-C-CCccc-cCCCCCCcEEEEEecCCcchhhHHHhc---------
Q 047959          206 MHLNFGSITLPAPPKNN--SSPLKNLIFISALHPS-S-CTPDI-LGRLPNVQTLRISGDLSYYHSGVSKSL---------  271 (478)
Q Consensus       206 ~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~-~-~~~~~-l~~l~~L~~L~l~~~~~~~~~~l~~~l---------  271 (478)
                      ++|++++|.+....+..  +..+++|++|++.++. . ..+.. ++++++|++|++++|.  ..+..+..+         
T Consensus       106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~~~L~  183 (455)
T 3v47_A          106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK--VKSICEEDLLNFQGKHFT  183 (455)
T ss_dssp             CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC--BSCCCTTTSGGGTTCEEE
T ss_pred             CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc--ccccChhhhhcccccccc
Confidence            99999888776544433  8899999999999998 3 33544 8899999999999984  222222222         


Q ss_pred             -------------------------cCCCCCCEEEEEecCccc-ccCcccccc---------------------------
Q 047959          272 -------------------------CQLHKLECLKLVNEGKMR-QLSRMILSE---------------------------  298 (478)
Q Consensus       272 -------------------------~~~~~L~~L~l~~~~~l~-~~p~~~~~~---------------------------  298 (478)
                                               ..+++|+.|++++ +.+. ..|.   .+                           
T Consensus       184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  259 (455)
T 3v47_A          184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG-NGFKESMAK---RFFDAIAGTKIQSLILSNSYNMGSSFGHT  259 (455)
T ss_dssp             EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTT-SCCCHHHHH---HHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred             ccccccCcccccchhhccccccccccccceeeeEecCC-Ccccccchh---hhhccccccceeeEeeccccccccccchh
Confidence                                     2346788888876 4332 1111   10                           


Q ss_pred             ----------c--cCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCC
Q 047959          299 ----------Y--KFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWL  366 (478)
Q Consensus       299 ----------~--~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l  366 (478)
                                .  . .++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+..  +..+++|++|+++++ .+
T Consensus       260 ~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N-~l  335 (455)
T 3v47_A          260 NFKDPDNFTFKGLE-ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA--FWGLTHLLKLNLSQN-FL  335 (455)
T ss_dssp             SSCCCCTTTTGGGT-TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSS-CC
T ss_pred             hhccCccccccccc-ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH--hcCcccCCEEECCCC-cc
Confidence                      0  1 268889999999887777788899999999999999887544322  678899999999995 56


Q ss_pred             Cce-eeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          367 EEW-TMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       367 ~~l-~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      +.+ +..+..+++|+.|++++|......|..+..+++|+.|++++|.
T Consensus       336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  382 (455)
T 3v47_A          336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ  382 (455)
T ss_dssp             CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence            655 4556789999999999997666667888999999999999986

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=2.5e-26  Score=219.03  Aligned_cols=247  Identities=19%  Similarity=0.228  Sum_probs=188.0

Q ss_pred             CeEeEEEecCCCCC---cCCccCCCCCCCceEeecC-CCCC-ccchhhhCCCCCcEEeCCCCcCc-ccchhhhccccCcE
Q 047959          134 KHLRVLNLGSAVLD---QYPPGLENLFYLKYLKLNI-PSLK-CLPSLLCTLLNLQTLEMPSSYID-HSPEDIWMMQKLMH  207 (478)
Q Consensus       134 ~~L~~L~L~~~~l~---~lp~~~~~l~~L~~L~l~~-~~i~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~  207 (478)
                      .+++.|+++++.++   .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.+. .+|..+.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            57899999999987   5888899999999999995 7777 88989999999999999999886 78888999999999


Q ss_pred             EEeeCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCC-CCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEe
Q 047959          208 LNFGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLP-NVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVN  284 (478)
Q Consensus       208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~-~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~  284 (478)
                      |++++|.+...+|..+..+++|++|++.++.  +..+..+..++ +|+.|++++|  ...+..+..+..++ |+.|++++
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N--~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN--RLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS--EEEEECCGGGGGCC-CSEEECCS
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC--eeeccCChHHhCCc-ccEEECcC
Confidence            9998888877888888888899999888887  46777777777 8888888887  45555566666665 88888876


Q ss_pred             cCccc-ccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecC
Q 047959          285 EGKMR-QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSM  363 (478)
Q Consensus       285 ~~~l~-~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  363 (478)
                       +.++ ..|.   .+.. +++|+.|++++|.+++..+ .+..+++|++|++++|.+.+..+..  +..+++|++|+++++
T Consensus       207 -N~l~~~~~~---~~~~-l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          207 -NMLEGDASV---LFGS-DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQG--LTQLKFLHSLNVSFN  278 (313)
T ss_dssp             -SEEEECCGG---GCCT-TSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGG--GGGCTTCCEEECCSS
T ss_pred             -CcccCcCCH---HHhc-CCCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccCcCChH--HhcCcCCCEEECcCC
Confidence             5555 4455   5666 7788888888877654333 3666777888888777776544333  566777777777774


Q ss_pred             CCCC-ceeeCCCcccccceeEEecCCCCCCC
Q 047959          364 LWLE-EWTMGAGAMPKLESLILNPCAYLRKL  393 (478)
Q Consensus       364 ~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~l  393 (478)
                       .++ .+|.. +.+++|+.|++.+|+.+...
T Consensus       279 -~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          279 -NLCGEIPQG-GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             -EEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred             -cccccCCCC-ccccccChHHhcCCCCccCC
Confidence             344 45443 66777777777777755443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.92  E-value=1.1e-24  Score=209.40  Aligned_cols=262  Identities=19%  Similarity=0.207  Sum_probs=206.1

Q ss_pred             eEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCccc-chhhhccccCcEEEeeC
Q 047959          135 HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHS-PEDIWMMQKLMHLNFGS  212 (478)
Q Consensus       135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~  212 (478)
                      ++++++++++.++.+|..+.  ++|++|++++|.++.++. .++++++|++|++++|.+..+ |..+..+++|++|++++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            68889999988888887654  588999999999987775 688899999999999988777 67788999999999977


Q ss_pred             CCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc
Q 047959          213 ITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ  290 (478)
Q Consensus       213 ~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~  290 (478)
                      |.+. .+|..+.  ++|++|++.++.  ...+..+.++++|+.|+++++.-...+..+..+..+++|+.|++++ +.++.
T Consensus       110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~  185 (330)
T 1xku_A          110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-TNITT  185 (330)
T ss_dssp             SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS-SCCCS
T ss_pred             CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC-Ccccc
Confidence            7655 5665554  789999988887  3344458889999999999884222234556778889999999987 77888


Q ss_pred             cCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCcee
Q 047959          291 LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWT  370 (478)
Q Consensus       291 ~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~  370 (478)
                      +|.   .+   .++|+.|++++|.+++..+..+..+++|++|++++|.+.+.....  +..+++|++|+++++ .++.+|
T Consensus       186 l~~---~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~lp  256 (330)
T 1xku_A          186 IPQ---GL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS--LANTPHLRELHLNNN-KLVKVP  256 (330)
T ss_dssp             CCS---SC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT--GGGSTTCCEEECCSS-CCSSCC
T ss_pred             CCc---cc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh--ccCCCCCCEEECCCC-cCccCC
Confidence            886   33   478999999999887777778889999999999988876543222  567889999999985 677888


Q ss_pred             eCCCcccccceeEEecCCCCCCCc-cccC------CCCCCCEEEEecCc
Q 047959          371 MGAGAMPKLESLILNPCAYLRKLP-EEQW------CIKSLCKLELHWPQ  412 (478)
Q Consensus       371 ~~~~~~~~L~~L~l~~c~~l~~lp-~~l~------~l~~L~~L~l~~c~  412 (478)
                      .....+++|+.|++++|.. +.+| ..+.      ..++|+.+++.++|
T Consensus       257 ~~l~~l~~L~~L~l~~N~i-~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          257 GGLADHKYIQVVYLHNNNI-SAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             TTTTTCSSCCEEECCSSCC-CCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             hhhccCCCcCEEECCCCcC-CccChhhcCCcccccccccccceEeecCc
Confidence            8888899999999999864 4443 2222      35788999999987

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=1.4e-24  Score=213.67  Aligned_cols=252  Identities=19%  Similarity=0.213  Sum_probs=193.3

Q ss_pred             CCCCeeeec---------CccccCCCCeEeEEEecCCCCCcCCc-cCCCCCCCceEeecCCCCCccchh-hhCCCCCcEE
Q 047959          117 KSDHLALIH---------CENFCKKFKHLRVLNLGSAVLDQYPP-GLENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTL  185 (478)
Q Consensus       117 ~~~~lr~l~---------~~~~~~~~~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L  185 (478)
                      .+++|+.|+         ....+..+++|++|++++|.++.++. .++++++|++|++++|.+..+|.. +.++++|++|
T Consensus        67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  146 (390)
T 3o6n_A           67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  146 (390)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence            467788772         23466889999999999999986654 488999999999999999998877 4889999999


Q ss_pred             eCCCCcCcccc-hhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcc-------------------cCC-CCCccc
Q 047959          186 EMPSSYIDHSP-EDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISAL-------------------HPS-SCTPDI  244 (478)
Q Consensus       186 ~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~-------------------~~~-~~~~~~  244 (478)
                      ++++|.+..++ ..+..+++|++|++++|.+...   .+..+++|+.|++.                   ++. ...+. 
T Consensus       147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~-  222 (390)
T 3o6n_A          147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG-  222 (390)
T ss_dssp             ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC-
T ss_pred             ECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccccCCCCcceEEECCCCeeeeccc-
Confidence            99999888875 4588899999999988765532   23344555555444                   443 22211 


Q ss_pred             cCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc-CccccccccCCCCceEEEEEeecCCCCCcCcc
Q 047959          245 LGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL-SRMILSEYKFPPSLTQLSLSNTELVEDPMPTL  323 (478)
Q Consensus       245 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~-p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  323 (478)
                       ...++|+.|+++++.  ..+.  ..+..+++|+.|++++ +.++.+ |.   .+.. +++|+.|++++|.+++ .+...
T Consensus       223 -~~~~~L~~L~l~~n~--l~~~--~~l~~l~~L~~L~Ls~-n~l~~~~~~---~~~~-l~~L~~L~L~~n~l~~-~~~~~  291 (390)
T 3o6n_A          223 -PVNVELTILKLQHNN--LTDT--AWLLNYPGLVEVDLSY-NELEKIMYH---PFVK-MQRLERLYISNNRLVA-LNLYG  291 (390)
T ss_dssp             -CCCSSCCEEECCSSC--CCCC--GGGGGCTTCSEEECCS-SCCCEEESG---GGTT-CSSCCEEECCSSCCCE-EECSS
T ss_pred             -cccccccEEECCCCC--Cccc--HHHcCCCCccEEECCC-CcCCCcChh---Hccc-cccCCEEECCCCcCcc-cCccc
Confidence             234688899998884  2222  4678899999999998 677755 66   7888 9999999999999865 34455


Q ss_pred             cCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCC
Q 047959          324 EELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAY  389 (478)
Q Consensus       324 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~  389 (478)
                      ..+++|++|++++|.+......   +..+++|+.|+++++ .++.++  ...+++|+.|++++|+.
T Consensus       292 ~~l~~L~~L~L~~n~l~~~~~~---~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          292 QPIPTLKVLDLSHNHLLHVERN---QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             SCCTTCCEEECCSSCCCCCGGG---HHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCE
T ss_pred             CCCCCCCEEECCCCcceecCcc---ccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCCc
Confidence            7899999999999988743322   467899999999995 577765  67899999999999974

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.92  E-value=8.2e-25  Score=223.71  Aligned_cols=152  Identities=20%  Similarity=0.243  Sum_probs=87.5

Q ss_pred             CCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc---cCccccccccCCCCceEEEEEeecCCCCCc-Cc
Q 047959          247 RLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ---LSRMILSEYKFPPSLTQLSLSNTELVEDPM-PT  322 (478)
Q Consensus       247 ~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~---~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~  322 (478)
                      .+++|++|++++|  ...+..+..+..+++|+.|++++ +.++.   +|.   .+.. +++|+.|++++|.+.+..+ ..
T Consensus       322 ~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~---~~~~-l~~L~~L~Ls~N~l~~~l~~~~  394 (520)
T 2z7x_B          322 KISPFLHLDFSNN--LLTDTVFENCGHLTELETLILQM-NQLKELSKIAE---MTTQ-MKSLQQLDISQNSVSYDEKKGD  394 (520)
T ss_dssp             SCCCCCEEECCSS--CCCTTTTTTCCCCSSCCEEECCS-SCCCBHHHHHH---HHTT-CTTCCEEECCSSCCBCCGGGCS
T ss_pred             hCCcccEEEeECC--ccChhhhhhhccCCCCCEEEccC-CccCccccchH---HHhh-CCCCCEEECCCCcCCcccccch
Confidence            4445555555555  33334455566666666666665 55542   333   4555 6666666666666655222 23


Q ss_pred             ccCCCCCCeEEEeeCcccCceeEEeCCCCC-cccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccc-cCCC
Q 047959          323 LEELPHLEVLKLKQNSYLERKLACVGCSSF-PQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEE-QWCI  400 (478)
Q Consensus       323 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l  400 (478)
                      +..+++|++|++++|.+.+..+.     .+ ++|+.|+++++ .++.+|.....+++|+.|++++|. ++.+|.. +..+
T Consensus       395 ~~~l~~L~~L~Ls~N~l~~~~~~-----~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l  467 (520)
T 2z7x_B          395 CSWTKSLLSLNMSSNILTDTIFR-----CLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRL  467 (520)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGGG-----SCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred             hccCccCCEEECcCCCCCcchhh-----hhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc-CCccCHHHhccC
Confidence            55666666666666666543321     22 56666666663 555666555566666666666664 3455553 5566


Q ss_pred             CCCCEEEEecCc
Q 047959          401 KSLCKLELHWPQ  412 (478)
Q Consensus       401 ~~L~~L~l~~c~  412 (478)
                      ++|+.|++++|+
T Consensus       468 ~~L~~L~l~~N~  479 (520)
T 2z7x_B          468 TSLQKIWLHTNP  479 (520)
T ss_dssp             TTCCEEECCSSC
T ss_pred             CcccEEECcCCC
Confidence            666666666644

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.92  E-value=5.5e-25  Score=227.54  Aligned_cols=136  Identities=15%  Similarity=0.106  Sum_probs=63.5

Q ss_pred             HhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCc-CcccCCCCCCeEEEeeCcccCceeEEe
Q 047959          269 KSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPM-PTLEELPHLEVLKLKQNSYLERKLACV  347 (478)
Q Consensus       269 ~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~  347 (478)
                      ..+..+++|+.|++++ +.+..+|.   .+.. +++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+.. 
T Consensus       367 ~~~~~~~~L~~L~l~~-n~l~~~~~---~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-  440 (570)
T 2z63_A          367 QSDFGTTSLKYLDLSF-NGVITMSS---NFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-  440 (570)
T ss_dssp             HHHHTCSCCCEEECCS-CSEEEEEE---EEET-CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT-
T ss_pred             ccccccCccCEEECCC-Cccccccc---cccc-cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhh-
Confidence            3344555666666655 44444443   3444 5555555555555443322 23445555555555554443322111 


Q ss_pred             CCCCCcccceeEEecCCCC-CceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecC
Q 047959          348 GCSSFPQLKILHLKSMLWL-EEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWP  411 (478)
Q Consensus       348 ~~~~~~~L~~L~L~~~~~l-~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c  411 (478)
                       +..+++|++|++++|.-. ..+|.....+++|+.|++++|......|..+..+++|+.|++++|
T Consensus       441 -~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  504 (570)
T 2z63_A          441 -FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN  504 (570)
T ss_dssp             -TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             -hhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence             344455555555543211 134444444555555555555433333444445555555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=3.3e-24  Score=216.03  Aligned_cols=260  Identities=21%  Similarity=0.232  Sum_probs=120.4

Q ss_pred             cCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEE
Q 047959          130 CKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLN  209 (478)
Q Consensus       130 ~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  209 (478)
                      +..+++|++|++++|.++.++. ++++++|++|++++|.+..+|. +..+++|++|++++|.+..++. +..+++|++|+
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~  162 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLS  162 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEE
T ss_pred             hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEee
Confidence            3444445555555444444433 4444455555555544444432 4444555555555444444432 34444444444


Q ss_pred             eeCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959          210 FGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR  289 (478)
Q Consensus       210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~  289 (478)
                      ++ +.... .+ .+..+++|+.|++.++.-.....+..+++|+.|+++++.  ..+..+  +..+++|+.|++++ +.++
T Consensus       163 l~-~~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~--l~~~~~--~~~l~~L~~L~l~~-n~l~  234 (466)
T 1o6v_A          163 FG-NQVTD-LK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ--ISDITP--LGILTNLDELSLNG-NQLK  234 (466)
T ss_dssp             EE-ESCCC-CG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CCCCGG--GGGCTTCCEEECCS-SCCC
T ss_pred             cC-CcccC-ch-hhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCc--cccccc--ccccCCCCEEECCC-CCcc
Confidence            42 21111 11 255556666666666551112335556666666666652  211111  34455566666655 4444


Q ss_pred             ccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeE-------------------EeCCC
Q 047959          290 QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLA-------------------CVGCS  350 (478)
Q Consensus       290 ~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-------------------~~~~~  350 (478)
                      .++    .+.. +++|+.|++++|.+.+..  .+..+++|+.|++++|.+.+....                   .. +.
T Consensus       235 ~~~----~l~~-l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~  306 (466)
T 1o6v_A          235 DIG----TLAS-LTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-IS  306 (466)
T ss_dssp             CCG----GGGG-CTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG-GG
T ss_pred             cch----hhhc-CCCCCEEECCCCccccch--hhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh-hc
Confidence            443    3444 555555555555543321  144445555555554444332210                   00 23


Q ss_pred             CCcccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          351 SFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       351 ~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      .+++|+.|++++| .++.++. ...+++|+.|++++|. ++.++ .+..+++|+.|++++|+
T Consensus       307 ~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          307 NLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             GCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC
T ss_pred             CCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCCc-cCCch-hhccCCCCCEEeCCCCc
Confidence            4445555555543 2333222 3455555555555553 33332 35556666666666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.91  E-value=2.1e-24  Score=207.69  Aligned_cols=261  Identities=19%  Similarity=0.195  Sum_probs=176.7

Q ss_pred             eEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCccc-chhhhccccCcEEEeeC
Q 047959          135 HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHS-PEDIWMMQKLMHLNFGS  212 (478)
Q Consensus       135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~  212 (478)
                      .+++++++++.++.+|..+.  ++|++|++++|.+..++ ..+.++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            56777887777777776653  57788888887777664 4677778888888888777666 56677778888888866


Q ss_pred             CCCCCCCCCCCCCCCCCcEeCcccCC-CCCc-cccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc
Q 047959          213 ITLPAPPKNNSSPLKNLIFISALHPS-SCTP-DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ  290 (478)
Q Consensus       213 ~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~  290 (478)
                      |.+. .+|..+.  ++|++|++.++. ...+ ..+.++++|+.|+++++.-...+..+..+..+ +|+.|++++ +.++.
T Consensus       112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~-n~l~~  186 (332)
T 2ft3_A          112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE-AKLTG  186 (332)
T ss_dssp             SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS-SBCSS
T ss_pred             CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC-CCCCc
Confidence            6554 5555544  677888877776 3333 34677788888888777311122344555555 777777776 66777


Q ss_pred             cCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCcee
Q 047959          291 LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWT  370 (478)
Q Consensus       291 ~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~  370 (478)
                      +|.   .+   .++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.....  +..+++|++|+++++ .++.+|
T Consensus       187 l~~---~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~lp  257 (332)
T 2ft3_A          187 IPK---DL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS--LSFLPTLRELHLDNN-KLSRVP  257 (332)
T ss_dssp             CCS---SS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG--GGGCTTCCEEECCSS-CCCBCC
T ss_pred             cCc---cc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH--hhCCCCCCEEECCCC-cCeecC
Confidence            775   33   357777888888776666667777788888888877766543322  456777888888774 666777


Q ss_pred             eCCCcccccceeEEecCCCCCCCc-cccCC------CCCCCEEEEecCc
Q 047959          371 MGAGAMPKLESLILNPCAYLRKLP-EEQWC------IKSLCKLELHWPQ  412 (478)
Q Consensus       371 ~~~~~~~~L~~L~l~~c~~l~~lp-~~l~~------l~~L~~L~l~~c~  412 (478)
                      .....+++|+.|++++|.. +.+| ..+..      .++|+.|++.++|
T Consensus       258 ~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          258 AGLPDLKLLQVVYLHTNNI-TKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             TTGGGCTTCCEEECCSSCC-CBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             hhhhcCccCCEEECCCCCC-CccChhHccccccccccccccceEeecCc
Confidence            7677777888888887753 3333 22222      4667778887776

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.91  E-value=3.2e-24  Score=231.36  Aligned_cols=109  Identities=19%  Similarity=0.196  Sum_probs=53.4

Q ss_pred             cCCCCeEeEEEecCCC-CCcC-CccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcc-cchh--hhccc
Q 047959          130 CKKFKHLRVLNLGSAV-LDQY-PPGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDH-SPED--IWMMQ  203 (478)
Q Consensus       130 ~~~~~~L~~L~L~~~~-l~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~-lp~~--i~~l~  203 (478)
                      +.++++|++|+|++|. +..+ |..++++++|++|++++|.+..+ |..++++++|++|++++|.+.. +|..  +.+++
T Consensus        44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~  123 (844)
T 3j0a_A           44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK  123 (844)
T ss_dssp             CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred             CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence            4455555555555553 2233 34455555555555555555533 4445555555555555554433 2332  44555


Q ss_pred             cCcEEEeeCCCCCCCCC-CCCCCCCCCcEeCcccCC
Q 047959          204 KLMHLNFGSITLPAPPK-NNSSPLKNLIFISALHPS  238 (478)
Q Consensus       204 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~  238 (478)
                      +|++|++++|.+....+ ..++++++|++|++.++.
T Consensus       124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A          124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred             CCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence            55555555554433222 234555555555555543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.91  E-value=1.6e-24  Score=223.11  Aligned_cols=132  Identities=17%  Similarity=0.142  Sum_probs=97.7

Q ss_pred             cccCCCCeEeEEEecCCCCCcCC-ccCCCCCCCceEeecCCCCCccchh-hhCCCCCcEEeCCCCcCcc--cchhhhccc
Q 047959          128 NFCKKFKHLRVLNLGSAVLDQYP-PGLENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYIDH--SPEDIWMMQ  203 (478)
Q Consensus       128 ~~~~~~~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~--lp~~i~~l~  203 (478)
                      ..+..+++|++|++++|.++.++ ..++++++|++|++++|.+..+|.. ++++++|++|++++|.+..  .|..+++++
T Consensus        44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~  123 (549)
T 2z81_A           44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT  123 (549)
T ss_dssp             STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred             hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence            44678888888888888887554 5688888888888888888876654 8888888888888887764  356678888


Q ss_pred             cCcEEEeeCCCCCCCCC-CCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEec
Q 047959          204 KLMHLNFGSITLPAPPK-NNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGD  259 (478)
Q Consensus       204 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~  259 (478)
                      +|++|++++|.....+| ..+..+++|++|++.++.  ...+..++.+++|+.|+++.+
T Consensus       124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  182 (549)
T 2z81_A          124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS  182 (549)
T ss_dssp             TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence            88888887776444454 467888888888888777  345556666665555555554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.91  E-value=1.1e-24  Score=224.26  Aligned_cols=148  Identities=16%  Similarity=0.128  Sum_probs=121.5

Q ss_pred             CeEeEEEecCCCCCcC-CccCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEe
Q 047959          134 KHLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNF  210 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l  210 (478)
                      +.|++|++++|.++.+ |..+.++++|++|++++|.+..++ ..++.+++|++|++++|.+..+|.. ++++++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            6799999999999955 567999999999999999999666 6799999999999999999888765 999999999999


Q ss_pred             eCCCCCC-CCCCCCCCCCCCcEeCcccCC--CCCc-cccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEE
Q 047959          211 GSITLPA-PPKNNSSPLKNLIFISALHPS--SCTP-DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLV  283 (478)
Q Consensus       211 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~--~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~  283 (478)
                      ++|.+.. ..|..++++++|++|++.++.  ...+ ..++++++|++|+++++.  ..+..+..+..+++|+.|+++
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~l~  180 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS--LRNYQSQSLKSIRDIHHLTLH  180 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT--CCEECTTTTTTCSEEEEEEEE
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc--ccccChhhhhccccCceEecc
Confidence            8887765 567789999999999999986  3343 578999999999999984  444444455444444444444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.91  E-value=7.4e-24  Score=228.58  Aligned_cols=280  Identities=18%  Similarity=0.140  Sum_probs=204.2

Q ss_pred             ccccCCCCeEeEEEecCCCCCcC-CccCCCCCCCceEeecCCC-CCcc-chhhhCCCCCcEEeCCCCcCccc-chhhhcc
Q 047959          127 ENFCKKFKHLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPS-LKCL-PSLLCTLLNLQTLEMPSSYIDHS-PEDIWMM  202 (478)
Q Consensus       127 ~~~~~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~-i~~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l  202 (478)
                      ..++...+++++|+|++|.++.+ |..+.++++|++|++++|. +..+ |..+.++++|++|++++|.+..+ |..+.++
T Consensus        17 ~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l   96 (844)
T 3j0a_A           17 TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL   96 (844)
T ss_dssp             SCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred             CCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence            34455557899999999999854 6779999999999999995 4466 67899999999999999988877 7889999


Q ss_pred             ccCcEEEeeCCCCCCCCCCC--CCCCCCCcEeCcccCC-CCC--ccccCCCCCCcEEEEEecCCcchhhHHHhccCC--C
Q 047959          203 QKLMHLNFGSITLPAPPKNN--SSPLKNLIFISALHPS-SCT--PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQL--H  275 (478)
Q Consensus       203 ~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~-~~~--~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~--~  275 (478)
                      ++|++|++++|.+....|..  +.++++|++|++++|. ...  +..++++++|++|+++++.  .....+..+..+  +
T Consensus        97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~--i~~~~~~~l~~l~~~  174 (844)
T 3j0a_A           97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ--IFLVCEHELEPLQGK  174 (844)
T ss_dssp             SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC--CCCCCSGGGHHHHHC
T ss_pred             cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc--CCeeCHHHcccccCC
Confidence            99999999988887766655  8999999999999998 332  3578999999999999984  222222222222  3


Q ss_pred             C------------------------------CCEEEEEecCccc-ccCcccc----------------------------
Q 047959          276 K------------------------------LECLKLVNEGKMR-QLSRMIL----------------------------  296 (478)
Q Consensus       276 ~------------------------------L~~L~l~~~~~l~-~~p~~~~----------------------------  296 (478)
                      +                              |+.|++++ +.+. ..|..+.                            
T Consensus       175 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~  253 (844)
T 3j0a_A          175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG-NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK  253 (844)
T ss_dssp             SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSS-CCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred             ccceEECCCCccccccccchhhcCCccccCceeEEecCC-CcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence            3                              55555554 2221 1111000                            


Q ss_pred             -----cccc-CCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCce-
Q 047959          297 -----SEYK-FPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEW-  369 (478)
Q Consensus       297 -----~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-  369 (478)
                           .+.. ..++|+.|++++|.+....+..++.+++|+.|+|++|.+.+..+..  +.++++|++|+++++ .++.+ 
T Consensus       254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~Ls~N-~l~~~~  330 (844)
T 3j0a_A          254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA--FYGLDNLQVLNLSYN-LLGELY  330 (844)
T ss_dssp             TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT--TTTCSSCCEEEEESC-CCSCCC
T ss_pred             CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH--hcCCCCCCEEECCCC-CCCccC
Confidence                 0000 0256778888877776666667788888888888888776543322  677888999999885 45544 


Q ss_pred             eeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          370 TMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       370 ~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      +..+..+++|+.|++++|......+..+.++++|+.|++++|.
T Consensus       331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred             HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence            5567788899999999886433334567788999999998876

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.91  E-value=1.5e-24  Score=208.56  Aligned_cols=262  Identities=16%  Similarity=0.178  Sum_probs=212.0

Q ss_pred             CeEeEEEecCCCCCcCCc-cCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEee
Q 047959          134 KHLRVLNLGSAVLDQYPP-GLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFG  211 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~  211 (478)
                      +.+++|++++|.++.++. .++++++|++|++++|.+..+ |..++.+++|++|++++|.+..+|..+.  ++|++|+++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence            578999999999997766 599999999999999999976 7889999999999999999999987665  799999998


Q ss_pred             CCCCCCCCCCCCCCCCCCcEeCcccCC-C---CCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCc
Q 047959          212 SITLPAPPKNNSSPLKNLIFISALHPS-S---CTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGK  287 (478)
Q Consensus       212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~-~---~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~  287 (478)
                      +|.+....+..+..+++|++|++.++. .   ..+..+.++++|+.|+++++.   ...++..+  .++|+.|++++ +.
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~---l~~l~~~~--~~~L~~L~l~~-n~  203 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN---ITTIPQGL--PPSLTELHLDG-NK  203 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC---CCSCCSSC--CTTCSEEECTT-SC
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc---cccCCccc--cccCCEEECCC-Cc
Confidence            887765555668899999999999887 2   556778899999999999984   22333333  37999999998 77


Q ss_pred             cccc-CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCC
Q 047959          288 MRQL-SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWL  366 (478)
Q Consensus       288 l~~~-p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l  366 (478)
                      ++.+ |.   .+.. +++|+.|++++|.+++.....+..+++|++|++++|.+.... . . +..+++|++|+++++ .+
T Consensus       204 l~~~~~~---~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp-~-~-l~~l~~L~~L~l~~N-~i  275 (330)
T 1xku_A          204 ITKVDAA---SLKG-LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-G-G-LADHKYIQVVYLHNN-NI  275 (330)
T ss_dssp             CCEECTG---GGTT-CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC-T-T-TTTCSSCCEEECCSS-CC
T ss_pred             CCccCHH---HhcC-CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCC-h-h-hccCCCcCEEECCCC-cC
Confidence            7766 45   6788 999999999999988777778899999999999999887322 2 2 678899999999984 67


Q ss_pred             CceeeCCC-------cccccceeEEecCCCCC--CCccccCCCCCCCEEEEecC
Q 047959          367 EEWTMGAG-------AMPKLESLILNPCAYLR--KLPEEQWCIKSLCKLELHWP  411 (478)
Q Consensus       367 ~~l~~~~~-------~~~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c  411 (478)
                      +.++....       ..+.|+.|++.+|+...  ..|..+..+++++.++++++
T Consensus       276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             CccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            76654321       35789999999998643  44567888999999999875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=1.1e-25  Score=214.52  Aligned_cols=243  Identities=16%  Similarity=0.159  Sum_probs=213.9

Q ss_pred             CCCceEeecCCCCC---ccchhhhCCCCCcEEeCCC-CcC-cccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcE
Q 047959          157 FYLKYLKLNIPSLK---CLPSLLCTLLNLQTLEMPS-SYI-DHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIF  231 (478)
Q Consensus       157 ~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~-~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  231 (478)
                      .+++.|+++++.+.   .+|..++++++|++|++++ +.+ ..+|..++++++|++|++++|.+...+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            58999999999998   6899999999999999995 655 478999999999999999999888788989999999999


Q ss_pred             eCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCC-CCCEEEEEecCccc-ccCccccccccCCCCceE
Q 047959          232 ISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLH-KLECLKLVNEGKMR-QLSRMILSEYKFPPSLTQ  307 (478)
Q Consensus       232 L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~-~L~~L~l~~~~~l~-~~p~~~~~~~~~~~~L~~  307 (478)
                      |++.++.  ...+..+..+++|++|++++|  ...+.++..+..++ +|+.|++++ +.+. .+|.   .+.. ++ |+.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N--~l~~~~p~~l~~l~~~L~~L~L~~-N~l~~~~~~---~~~~-l~-L~~  201 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGN--RISGAIPDSYGSFSKLFTSMTISR-NRLTGKIPP---TFAN-LN-LAF  201 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSS--CCEEECCGGGGCCCTTCCEEECCS-SEEEEECCG---GGGG-CC-CSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCC--cccCcCCHHHhhhhhcCcEEECcC-CeeeccCCh---HHhC-Cc-ccE
Confidence            9999998  578889999999999999998  56667788888888 999999998 6666 7787   7888 66 999


Q ss_pred             EEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCC-ceeeCCCcccccceeEEec
Q 047959          308 LSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLE-EWTMGAGAMPKLESLILNP  386 (478)
Q Consensus       308 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-~l~~~~~~~~~L~~L~l~~  386 (478)
                      |++++|.+++..+..++.+++|+.|++++|.+.+..+.   +..+++|++|+++++ .++ .+|..+..+++|+.|++++
T Consensus       202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~  277 (313)
T 1ogq_A          202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---VGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---CCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCS
T ss_pred             EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc---ccccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcC
Confidence            99999999888888999999999999999998765443   567899999999996 455 7787888999999999999


Q ss_pred             CCCCCCCccccCCCCCCCEEEEecCc
Q 047959          387 CAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       387 c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      |...+.+|.. ..+++|+.+++.+++
T Consensus       278 N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          278 NNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             SEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             CcccccCCCC-ccccccChHHhcCCC
Confidence            9877788875 789999999998876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=3.5e-24  Score=222.39  Aligned_cols=252  Identities=19%  Similarity=0.204  Sum_probs=193.8

Q ss_pred             CCCCeeeec---------CccccCCCCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccchh-hhCCCCCcEE
Q 047959          117 KSDHLALIH---------CENFCKKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTL  185 (478)
Q Consensus       117 ~~~~lr~l~---------~~~~~~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L  185 (478)
                      .+++|++|+         ....+..+++|++|+|++|.++.+|.. ++++++|++|++++|.+..+|.. ++++++|++|
T Consensus        73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence            467788882         334668899999999999999866654 78999999999999999988876 4889999999


Q ss_pred             eCCCCcCcccch-hhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccC-------------------C-CCCccc
Q 047959          186 EMPSSYIDHSPE-DIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHP-------------------S-SCTPDI  244 (478)
Q Consensus       186 ~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-------------------~-~~~~~~  244 (478)
                      ++++|.+..++. .++.+++|++|++++|.+...   .++.+++|+.|++.++                   . ...+..
T Consensus       153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~  229 (597)
T 3oja_B          153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP  229 (597)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred             EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence            999998877754 588999999999987766542   1334455555554444                   3 111211


Q ss_pred             cCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc-CccccccccCCCCceEEEEEeecCCCCCcCcc
Q 047959          245 LGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL-SRMILSEYKFPPSLTQLSLSNTELVEDPMPTL  323 (478)
Q Consensus       245 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~-p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  323 (478)
                        ..++|+.|++++|.  ..+  +..+..+++|+.|++++ +.+..+ |.   .++. +++|+.|++++|.+++ .+..+
T Consensus       230 --~~~~L~~L~L~~n~--l~~--~~~l~~l~~L~~L~Ls~-N~l~~~~~~---~~~~-l~~L~~L~Ls~N~l~~-l~~~~  297 (597)
T 3oja_B          230 --VNVELTILKLQHNN--LTD--TAWLLNYPGLVEVDLSY-NELEKIMYH---PFVK-MQRLERLYISNNRLVA-LNLYG  297 (597)
T ss_dssp             --CCSCCCEEECCSSC--CCC--CGGGGGCTTCSEEECCS-SCCCEEESG---GGTT-CSSCCEEECTTSCCCE-EECSS
T ss_pred             --cCCCCCEEECCCCC--CCC--ChhhccCCCCCEEECCC-CccCCCCHH---HhcC-ccCCCEEECCCCCCCC-CCccc
Confidence              23578899998884  332  25678999999999998 667654 66   7888 9999999999999866 35566


Q ss_pred             cCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCC
Q 047959          324 EELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAY  389 (478)
Q Consensus       324 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~  389 (478)
                      ..+++|+.|+|++|.+.....  . +..+++|+.|++++| .+..++  ...+++|+.|++++|+.
T Consensus       298 ~~l~~L~~L~Ls~N~l~~i~~--~-~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          298 QPIPTLKVLDLSHNHLLHVER--N-QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             SCCTTCCEEECCSSCCCCCGG--G-HHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCE
T ss_pred             ccCCCCcEEECCCCCCCccCc--c-cccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCCC
Confidence            789999999999998874321  1 567899999999995 566664  67899999999999984

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=8.8e-24  Score=212.89  Aligned_cols=273  Identities=19%  Similarity=0.173  Sum_probs=210.4

Q ss_pred             CCCCCeeeec-------CccccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccch--------------
Q 047959          116 SKSDHLALIH-------CENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS--------------  174 (478)
Q Consensus       116 ~~~~~lr~l~-------~~~~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~--------------  174 (478)
                      ..+++|+.|+       ....+.++++|++|++++|.++.++. +.++++|++|++++|.+..++.              
T Consensus        87 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~  165 (466)
T 1o6v_A           87 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN  165 (466)
T ss_dssp             TTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE
T ss_pred             hccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCC
Confidence            3456777772       11116788888888888888887765 7888888888888877665542              


Q ss_pred             ------hhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCC
Q 047959          175 ------LLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRL  248 (478)
Q Consensus       175 ------~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l  248 (478)
                            .+.++++|++|++++|.+..++. +..+++|++|++++|......|  ++.+++|++|++.++.-.....+..+
T Consensus       166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l  242 (466)
T 1o6v_A          166 QVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASL  242 (466)
T ss_dssp             SCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGC
T ss_pred             cccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcC
Confidence                  25667788888888888877754 7788889999887776554433  67788899999888872223467888


Q ss_pred             CCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCC
Q 047959          249 PNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPH  328 (478)
Q Consensus       249 ~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~  328 (478)
                      ++|+.|++++|.  ..+..+  +..+++|+.|++++ +.+..+|    .+.. +++|+.|++++|.+.+.  ..++.+++
T Consensus       243 ~~L~~L~l~~n~--l~~~~~--~~~l~~L~~L~l~~-n~l~~~~----~~~~-l~~L~~L~L~~n~l~~~--~~~~~l~~  310 (466)
T 1o6v_A          243 TNLTDLDLANNQ--ISNLAP--LSGLTKLTELKLGA-NQISNIS----PLAG-LTALTNLELNENQLEDI--SPISNLKN  310 (466)
T ss_dssp             TTCSEEECCSSC--CCCCGG--GTTCTTCSEEECCS-SCCCCCG----GGTT-CTTCSEEECCSSCCSCC--GGGGGCTT
T ss_pred             CCCCEEECCCCc--cccchh--hhcCCCCCEEECCC-CccCccc----cccC-CCccCeEEcCCCcccCc--hhhcCCCC
Confidence            999999999884  322222  77889999999997 7777776    4566 89999999999998653  33789999


Q ss_pred             CCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEE
Q 047959          329 LEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLEL  408 (478)
Q Consensus       329 L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l  408 (478)
                      |+.|++++|.+.+..+    +..+++|+.|++++| .++.++ ....+++|+.|++++|...+..|  +..+++|+.|++
T Consensus       311 L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  382 (466)
T 1o6v_A          311 LTYLTLYFNNISDISP----VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL  382 (466)
T ss_dssp             CSEEECCSSCCSCCGG----GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred             CCEEECcCCcCCCchh----hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEec
Confidence            9999999998876543    568999999999996 677664 56789999999999997655444  789999999999


Q ss_pred             ecCc
Q 047959          409 HWPQ  412 (478)
Q Consensus       409 ~~c~  412 (478)
                      ++|+
T Consensus       383 ~~n~  386 (466)
T 1o6v_A          383 NDQA  386 (466)
T ss_dssp             CCEE
T ss_pred             cCCc
Confidence            9986

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.91  E-value=2.3e-24  Score=207.41  Aligned_cols=263  Identities=18%  Similarity=0.195  Sum_probs=211.5

Q ss_pred             CCeEeEEEecCCCCCcCC-ccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEe
Q 047959          133 FKHLRVLNLGSAVLDQYP-PGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNF  210 (478)
Q Consensus       133 ~~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l  210 (478)
                      .+.|++|++++|.++.++ ..+.++++|++|++++|.+..+ |..++++++|++|++++|.+..+|..+.  ++|++|++
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRI  130 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEEC
T ss_pred             CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEEC
Confidence            367999999999999664 4699999999999999999966 6789999999999999999999998665  89999999


Q ss_pred             eCCCCCCCCCCCCCCCCCCcEeCcccCC-C---CCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecC
Q 047959          211 GSITLPAPPKNNSSPLKNLIFISALHPS-S---CTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEG  286 (478)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~---~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~  286 (478)
                      ++|.+....+..+..+++|++|++.++. .   ..+..+..+ +|+.|+++++.  . ..++..+  .++|+.|++++ +
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~--l-~~l~~~~--~~~L~~L~l~~-n  203 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK--L-TGIPKDL--PETLNELHLDH-N  203 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB--C-SSCCSSS--CSSCSCCBCCS-S
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC--C-CccCccc--cCCCCEEECCC-C
Confidence            8887765545568999999999999987 2   456667777 99999999983  2 2244333  27999999998 7


Q ss_pred             cccccC-ccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCC
Q 047959          287 KMRQLS-RMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLW  365 (478)
Q Consensus       287 ~l~~~p-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  365 (478)
                      .++.++ .   .+.. +++|+.|++++|.+.+..+..++.+++|++|++++|.+... +. . +..+++|+.|+++++ .
T Consensus       204 ~i~~~~~~---~l~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~-~-l~~l~~L~~L~l~~N-~  275 (332)
T 2ft3_A          204 KIQAIELE---DLLR-YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PA-G-LPDLKLLQVVYLHTN-N  275 (332)
T ss_dssp             CCCCCCTT---SSTT-CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC-CT-T-GGGCTTCCEEECCSS-C
T ss_pred             cCCccCHH---HhcC-CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec-Ch-h-hhcCccCCEEECCCC-C
Confidence            777665 4   6777 99999999999999887777899999999999999988732 22 2 678899999999984 6


Q ss_pred             CCceeeCC-------CcccccceeEEecCCCC--CCCccccCCCCCCCEEEEecCc
Q 047959          366 LEEWTMGA-------GAMPKLESLILNPCAYL--RKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       366 l~~l~~~~-------~~~~~L~~L~l~~c~~l--~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      ++.++...       ...+.|+.|++.+|+..  +..|..+..+++|+.++++++.
T Consensus       276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            77665432       12578999999999865  4556778899999999998864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=5.5e-24  Score=220.04  Aligned_cols=110  Identities=20%  Similarity=0.182  Sum_probs=71.2

Q ss_pred             ccCCCCeEeEEEecCCCCCcCC-ccCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccch-hhhccccC
Q 047959          129 FCKKFKHLRVLNLGSAVLDQYP-PGLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKL  205 (478)
Q Consensus       129 ~~~~~~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L  205 (478)
                      .+..+++|++|++++|.++.++ ..++++++|++|++++|.+..+| ..++++++|++|++++|.+..+|. .++++++|
T Consensus        47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  126 (570)
T 2z63_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  126 (570)
T ss_dssp             TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred             HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence            4566677777777777666443 34666777777777777666554 456667777777777776666654 46666777


Q ss_pred             cEEEeeCCCCCC-CCCCCCCCCCCCcEeCcccCC
Q 047959          206 MHLNFGSITLPA-PPKNNSSPLKNLIFISALHPS  238 (478)
Q Consensus       206 ~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~  238 (478)
                      ++|++++|.+.. .+|..++++++|++|++.++.
T Consensus       127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~  160 (570)
T 2z63_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (570)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred             cEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence            777776665544 456666666777777666654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.90  E-value=6.1e-24  Score=224.41  Aligned_cols=277  Identities=18%  Similarity=0.133  Sum_probs=182.9

Q ss_pred             ccccCCCCeEeEEEecCCCCCcC-CccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccc-hhhhccc
Q 047959          127 ENFCKKFKHLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSP-EDIWMMQ  203 (478)
Q Consensus       127 ~~~~~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~  203 (478)
                      ...+.++++|++|++++|.++.+ |..++++++|++|++++|.+..+|. .++++++|++|++++|.+..+| ..+++++
T Consensus        42 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  121 (680)
T 1ziw_A           42 AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK  121 (680)
T ss_dssp             GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT
T ss_pred             HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccC
Confidence            34467777888888888877744 4457777888888888888777775 4777888888888888777775 4577788


Q ss_pred             cCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCC-cccc--CCCCCCcEEEEEecCCcchhhHHHhcc-------
Q 047959          204 KLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCT-PDIL--GRLPNVQTLRISGDLSYYHSGVSKSLC-------  272 (478)
Q Consensus       204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l--~~l~~L~~L~l~~~~~~~~~~l~~~l~-------  272 (478)
                      +|++|++++|.+....|..+..+++|++|++.++. ... +..+  ..+++|+.|+++++.  ..+..+..+.       
T Consensus       122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~  199 (680)
T 1ziw_A          122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ--IKEFSPGCFHAIGRLFG  199 (680)
T ss_dssp             TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC--CCCBCTTGGGGSSEECE
T ss_pred             CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc--ccccChhhhhhhhhhhh
Confidence            88888887777666666667778888888877776 222 2222  245677777777663  2111111121       


Q ss_pred             --------------------CCCCCCEEEEEecCcccc-cCccccccccCC--CCceEEEEEeecCCCCCcCcccCCCCC
Q 047959          273 --------------------QLHKLECLKLVNEGKMRQ-LSRMILSEYKFP--PSLTQLSLSNTELVEDPMPTLEELPHL  329 (478)
Q Consensus       273 --------------------~~~~L~~L~l~~~~~l~~-~p~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~l~~L  329 (478)
                                          ..++|+.|++++ +.+.. .|.   ++.. +  ++|+.|++++|.+.+..+..++.+++|
T Consensus       200 L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~-n~l~~~~~~---~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  274 (680)
T 1ziw_A          200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSN-SQLSTTSNT---TFLG-LKWTNLTMLDLSYNNLNVVGNDSFAWLPQL  274 (680)
T ss_dssp             EECTTCCCHHHHHHHHHHHHTTSCCCEEECTT-SCCCEECTT---TTGG-GGGSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             hhccccccChhhHHHHHHHhhhccccEEEccC-CcccccChh---Hhhc-cCcCCCCEEECCCCCcCccCcccccCcccc
Confidence                                125566666665 44443 333   4444 4  348888888888776666777888888


Q ss_pred             CeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCC-----ceee----CCCcccccceeEEecCCCCCCCccccCCC
Q 047959          330 EVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLE-----EWTM----GAGAMPKLESLILNPCAYLRKLPEEQWCI  400 (478)
Q Consensus       330 ~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-----~l~~----~~~~~~~L~~L~l~~c~~l~~lp~~l~~l  400 (478)
                      ++|++++|.+.+..+..  +..+++|+.|++.++..-.     .+|.    .+..+++|+.|++++|......|..+.++
T Consensus       275 ~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  352 (680)
T 1ziw_A          275 EYFFLEYNNIQHLFSHS--LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL  352 (680)
T ss_dssp             CEEECCSCCBSEECTTT--TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTC
T ss_pred             cEeeCCCCccCccChhh--hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccc
Confidence            88888887776543222  5677888888887532111     2222    34567888888888876555555667777


Q ss_pred             CCCCEEEEecCc
Q 047959          401 KSLCKLELHWPQ  412 (478)
Q Consensus       401 ~~L~~L~l~~c~  412 (478)
                      ++|+.|++++|.
T Consensus       353 ~~L~~L~Ls~n~  364 (680)
T 1ziw_A          353 INLKYLSLSNSF  364 (680)
T ss_dssp             TTCCEEECTTCB
T ss_pred             cCCcEEECCCCc
Confidence            888888877653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.90  E-value=1.2e-23  Score=216.97  Aligned_cols=122  Identities=16%  Similarity=0.183  Sum_probs=101.8

Q ss_pred             CeEeEEEecCCCCCcCC-ccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEee
Q 047959          134 KHLRVLNLGSAVLDQYP-PGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFG  211 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~  211 (478)
                      ++|++|++++|.++.++ ..+.++++|++|++++|.++.+ |..+.++++|++|++++|.+..+|..  .+++|++|+++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS  129 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence            78999999999999777 4699999999999999999976 66799999999999999999999986  89999999998


Q ss_pred             CCCCCC-CCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCC--cEEEEEec
Q 047959          212 SITLPA-PPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNV--QTLRISGD  259 (478)
Q Consensus       212 ~~~~~~-~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L--~~L~l~~~  259 (478)
                      +|.+.. ..|..++++++|++|++.++. ..  ..+..+++|  +.|+++++
T Consensus       130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             SSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEES
T ss_pred             CCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecc
Confidence            888765 456789999999999999886 21  123333334  66666665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=1.9e-23  Score=202.72  Aligned_cols=264  Identities=19%  Similarity=0.197  Sum_probs=130.7

Q ss_pred             EEecCCCCCcCCccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccc-hhhhccccCcEEEeeCCCCC
Q 047959          139 LNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSP-EDIWMMQKLMHLNFGSITLP  216 (478)
Q Consensus       139 L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~  216 (478)
                      .+.+++.++.+|..+.  ++|++|++++|.++.+|. .+.++++|++|++++|.+..++ ..+.++++|++|++++|.+.
T Consensus        36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  113 (353)
T 2z80_A           36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS  113 (353)
T ss_dssp             EECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             eeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence            3444444444444332  244444444444444333 3444444444444444444432 23444444444444444333


Q ss_pred             CCCCCCCCCCCCCcEeCcccCC-CCCcc--ccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc-C
Q 047959          217 APPKNNSSPLKNLIFISALHPS-SCTPD--ILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL-S  292 (478)
Q Consensus       217 ~~~~~~~~~l~~L~~L~l~~~~-~~~~~--~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~-p  292 (478)
                      ...+..+..+++|++|++.++. ...+.  .+.++++|+.|++++|. ......+..+..+++|+.|++++ +.++.+ |
T Consensus       114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~  191 (353)
T 2z80_A          114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDA-SDLQSYEP  191 (353)
T ss_dssp             SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEE-TTCCEECT
T ss_pred             cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc-cccccCHHHccCCCCCCEEECCC-CCcCccCH
Confidence            2111113444444444444444 22222  34555555555555541 11112233445555666666655 444433 4


Q ss_pred             ccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEe-CCCCCcccceeEEecCCCCC----
Q 047959          293 RMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACV-GCSSFPQLKILHLKSMLWLE----  367 (478)
Q Consensus       293 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~l~----  367 (478)
                      .   .+.. +++|++|++++|.+.......+..+++|+.|++++|.+.+..+... .....+.++.+++.++ .+.    
T Consensus       192 ~---~l~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l  266 (353)
T 2z80_A          192 K---SLKS-IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV-KITDESL  266 (353)
T ss_dssp             T---TTTT-CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC-BCCHHHH
T ss_pred             H---HHhc-cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc-cccCcch
Confidence            4   5555 6666666666665533222223345666666666665554321110 0223455666666654 232    


Q ss_pred             -ceeeCCCcccccceeEEecCCCCCCCcccc-CCCCCCCEEEEecCc
Q 047959          368 -EWTMGAGAMPKLESLILNPCAYLRKLPEEQ-WCIKSLCKLELHWPQ  412 (478)
Q Consensus       368 -~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~  412 (478)
                       .+|.....+++|+.|++++|. ++.+|..+ ..+++|+.|++++|+
T Consensus       267 ~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          267 FQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             HHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence             344445677888888888875 45677654 788888888888875

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.90  E-value=5.3e-23  Score=205.96  Aligned_cols=252  Identities=19%  Similarity=0.112  Sum_probs=122.7

Q ss_pred             CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEe
Q 047959          131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNF  210 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l  210 (478)
                      ..+++|++|++++|.++.+|  ++.+++|++|++++|.++.+|  ++.+++|++|++++|.+..+|  ++.+++|++|++
T Consensus        61 ~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l  134 (457)
T 3bz5_A           61 EKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNC  134 (457)
T ss_dssp             GGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred             cccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEEC
Confidence            44555556666665555543  555555666666555555543  555555555555555555554  455555555555


Q ss_pred             eCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcc
Q 047959          211 GSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKM  288 (478)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l  288 (478)
                      ++|.+.. +  .++.+++|++|++..+.  ...  .++.+++|+.|+++++.  ..+ ++  +..+++|+.|++++ +.+
T Consensus       135 ~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~--l~~-l~--l~~l~~L~~L~l~~-N~l  203 (457)
T 3bz5_A          135 ARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK--ITE-LD--VSQNKLLNRLNCDT-NNI  203 (457)
T ss_dssp             TTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC--CCC-CC--CTTCTTCCEEECCS-SCC
T ss_pred             CCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc--cce-ec--cccCCCCCEEECcC-CcC
Confidence            5544433 2  14445555555555543  111  24444555555555442  111 11  34444444444443 333


Q ss_pred             cccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCcee------------------------
Q 047959          289 RQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKL------------------------  344 (478)
Q Consensus       289 ~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~------------------------  344 (478)
                      +.++     ++. +++|+.|++++|.+++.  + ++.+++|+.|++++|.+.+..+                        
T Consensus       204 ~~~~-----l~~-l~~L~~L~Ls~N~l~~i--p-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n  274 (457)
T 3bz5_A          204 TKLD-----LNQ-NIQLTFLDCSSNKLTEI--D-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHN  274 (457)
T ss_dssp             SCCC-----CTT-CTTCSEEECCSSCCSCC--C-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTC
T ss_pred             Ceec-----ccc-CCCCCEEECcCCccccc--C-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCC
Confidence            3331     223 44444444444444331  1 3344444444444444333210                        


Q ss_pred             ----EEeCCCCCcccceeEEecCCCCCceeeC--------CCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          345 ----ACVGCSSFPQLKILHLKSMLWLEEWTMG--------AGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       345 ----~~~~~~~~~~L~~L~L~~~~~l~~l~~~--------~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                          ... .+.+++|+.|++++|..+..+|..        ...+++|+.|++++|.. +.++  +.++++|+.|+++++.
T Consensus       275 ~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l-~~l~--l~~l~~L~~L~l~~N~  350 (457)
T 3bz5_A          275 TQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTEL-TELD--VSHNTKLKSLSCVNAH  350 (457)
T ss_dssp             TTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCC-SCCC--CTTCTTCSEEECCSSC
T ss_pred             ccCCccc-ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcc-cccc--cccCCcCcEEECCCCC
Confidence                011 344566666666666555444421        23445666666665542 3342  6667777777777654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=7.6e-24  Score=203.01  Aligned_cols=202  Identities=17%  Similarity=0.216  Sum_probs=163.7

Q ss_pred             cCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCC-cCcccchhhhc-------
Q 047959          130 CKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSS-YIDHSPEDIWM-------  201 (478)
Q Consensus       130 ~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~i~~-------  201 (478)
                      +.++++|++|++++|.++.+|..++++++|++|++++|.+..+|..++++++|++|++++| .+..+|..+..       
T Consensus       100 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~  179 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH  179 (328)
T ss_dssp             GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred             hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence            3558999999999999999999999999999999999999999999999999999999998 77888887664       


Q ss_pred             --cccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCC
Q 047959          202 --MQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLE  278 (478)
Q Consensus       202 --l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~  278 (478)
                        +++|++|++++|.+. .+|..++.+++|++|++.+|. ...+..++.+++|+.|++++|  ...+.++..+..+++|+
T Consensus       180 ~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n--~~~~~~p~~~~~l~~L~  256 (328)
T 4fcg_A          180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC--TALRNYPPIFGGRAPLK  256 (328)
T ss_dssp             EESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTC--TTCCBCCCCTTCCCCCC
T ss_pred             ccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCC--cchhhhHHHhcCCCCCC
Confidence              889999999887766 777778888888888888877 666667777888888888877  45555666677777777


Q ss_pred             EEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCc
Q 047959          279 CLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNS  338 (478)
Q Consensus       279 ~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~  338 (478)
                      .|++++|.....+|.   .+.. +++|+.|++++|.+.+..+..++++++|+.+++..+.
T Consensus       257 ~L~L~~n~~~~~~p~---~~~~-l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          257 RLILKDCSNLLTLPL---DIHR-LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             EEECTTCTTCCBCCT---TGGG-CTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             EEECCCCCchhhcch---hhhc-CCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            777777666667776   6777 7777777777777777777777777777777776443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.89  E-value=1.7e-22  Score=202.28  Aligned_cols=234  Identities=18%  Similarity=0.110  Sum_probs=153.4

Q ss_pred             cCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEE
Q 047959          130 CKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLN  209 (478)
Q Consensus       130 ~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  209 (478)
                      +..+++|++|++++|.++.++  ++++++|++|++++|.++.+|  ++.+++|++|++++|.+..++  ++.+++|++|+
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~  154 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELD  154 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEE
T ss_pred             cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEE
Confidence            467778888888888877664  777888888888888877765  777788888888888777764  66777777777


Q ss_pred             eeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcc
Q 047959          210 FGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKM  288 (478)
Q Consensus       210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l  288 (478)
                      +++|.....+  .+..+++|+.|++.++. ...+  ++.+++|+.|++++|.  ....   .+..+++|+.|++++ +.+
T Consensus       155 l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~--l~~~---~l~~l~~L~~L~Ls~-N~l  224 (457)
T 3bz5_A          155 CHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNN--ITKL---DLNQNIQLTFLDCSS-NKL  224 (457)
T ss_dssp             CTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSC--CSCC---CCTTCTTCSEEECCS-SCC
T ss_pred             CCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCc--CCee---ccccCCCCCEEECcC-Ccc
Confidence            7666444443  35666777777777666 3333  5666666666666663  2111   255666666666665 555


Q ss_pred             cccCccccccccCCCCceEEEEEeecCCCCCcCc-----------------------------ccCCCCCCeEEEeeCcc
Q 047959          289 RQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPT-----------------------------LEELPHLEVLKLKQNSY  339 (478)
Q Consensus       289 ~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----------------------------l~~l~~L~~L~L~~~~~  339 (478)
                      +.+|     +.. +++|+.|++++|.+++..+..                             .+.+++|+.|++++|..
T Consensus       225 ~~ip-----~~~-l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~  298 (457)
T 3bz5_A          225 TEID-----VTP-LTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ  298 (457)
T ss_dssp             SCCC-----CTT-CTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTT
T ss_pred             cccC-----ccc-cCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcc
Confidence            5554     233 556666666666554433222                             23456777777777665


Q ss_pred             cCceeE-------EeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCC
Q 047959          340 LERKLA-------CVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAY  389 (478)
Q Consensus       340 ~~~~~~-------~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~  389 (478)
                      .+..+.       .. +..+++|+.|++++ +.++.++  .+.+++|+.|++++|..
T Consensus       299 l~~l~~~~~~L~~L~-l~~~~~L~~L~L~~-N~l~~l~--l~~l~~L~~L~l~~N~l  351 (457)
T 3bz5_A          299 LYLLDCQAAGITELD-LSQNPKLVYLYLNN-TELTELD--VSHNTKLKSLSCVNAHI  351 (457)
T ss_dssp             CCEEECTTCCCSCCC-CTTCTTCCEEECTT-CCCSCCC--CTTCTTCSEEECCSSCC
T ss_pred             cceeccCCCcceEec-hhhcccCCEEECCC-Ccccccc--cccCCcCcEEECCCCCC
Confidence            443321       01 45667888888887 4677663  78899999999999864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.89  E-value=3.5e-23  Score=216.62  Aligned_cols=111  Identities=20%  Similarity=0.160  Sum_probs=71.3

Q ss_pred             cccCCCCeEeEEEecCCCCCcCCc-cCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccchh-hhcccc
Q 047959          128 NFCKKFKHLRVLNLGSAVLDQYPP-GLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPED-IWMMQK  204 (478)
Q Consensus       128 ~~~~~~~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~  204 (478)
                      ..|.++++|++|+|++|.++.+|+ .|.++++|++|+|++|+++.+|. .+.++++|++|++++|.+..+|.. ++++++
T Consensus        70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~  149 (635)
T 4g8a_A           70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  149 (635)
T ss_dssp             TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred             HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence            445666677777777777665544 36667777777777777666654 356667777777777766666543 566677


Q ss_pred             CcEEEeeCCCCCC-CCCCCCCCCCCCcEeCcccCC
Q 047959          205 LMHLNFGSITLPA-PPKNNSSPLKNLIFISALHPS  238 (478)
Q Consensus       205 L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~  238 (478)
                      |++|++++|.+.. ..|..++.+++|++|++.++.
T Consensus       150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             cCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence            7777776665533 445556666677777666665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.89  E-value=4.1e-23  Score=200.38  Aligned_cols=250  Identities=16%  Similarity=0.160  Sum_probs=204.0

Q ss_pred             CeEeEEEecCCCCCcCCc-cCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEe
Q 047959          134 KHLRVLNLGSAVLDQYPP-GLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNF  210 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l  210 (478)
                      ++|++|++++|.++.+|. .+.++++|++|++++|.+..++ ..++++++|++|++++|.+..+|.. +.++++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            579999999999997776 6999999999999999999764 5699999999999999999999876 789999999999


Q ss_pred             eCCCCCCCCCC--CCCCCCCCcEeCcccCC--C-CCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEec
Q 047959          211 GSITLPAPPKN--NSSPLKNLIFISALHPS--S-CTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE  285 (478)
Q Consensus       211 ~~~~~~~~~~~--~~~~l~~L~~L~l~~~~--~-~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~  285 (478)
                      ++|.+. .+|.  .+..+++|++|++.++.  . ..+..++++++|++|++++|  ...+..+..+..+++|++|++++ 
T Consensus       132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~-  207 (353)
T 2z80_A          132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS--DLQSYEPKSLKSIQNVSHLILHM-  207 (353)
T ss_dssp             TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET--TCCEECTTTTTTCSEEEEEEEEC-
T ss_pred             CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC--CcCccCHHHHhccccCCeecCCC-
Confidence            887665 4554  68899999999999984  3 33567899999999999998  45555677889999999999998 


Q ss_pred             CcccccCccccccccCCCCceEEEEEeecCCCCCcCcc---cCCCCCCeEEEeeCcccCcee---EEeCCCCCcccceeE
Q 047959          286 GKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTL---EELPHLEVLKLKQNSYLERKL---ACVGCSSFPQLKILH  359 (478)
Q Consensus       286 ~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~L~~~~~~~~~~---~~~~~~~~~~L~~L~  359 (478)
                      +.++.+|..  .+.. +++|+.|++++|.+++..+..+   ...+.++.++++++.+.+...   ... +..+++|++|+
T Consensus       208 n~l~~~~~~--~~~~-~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~-l~~l~~L~~L~  283 (353)
T 2z80_A          208 KQHILLLEI--FVDV-TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL-LNQISGLLELE  283 (353)
T ss_dssp             SCSTTHHHH--HHHH-TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHH-HHTCTTCCEEE
T ss_pred             Cccccchhh--hhhh-cccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHH-HhcccCCCEEE
Confidence            777877761  2345 8999999999999877554433   346788999999887765321   111 46789999999


Q ss_pred             EecCCCCCceeeCC-CcccccceeEEecCCCCCC
Q 047959          360 LKSMLWLEEWTMGA-GAMPKLESLILNPCAYLRK  392 (478)
Q Consensus       360 L~~~~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~  392 (478)
                      ++++ .++.+|... +.+++|+.|++++|+....
T Consensus       284 Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          284 FSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             CCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCC-CCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence            9995 788888775 7899999999999975543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.88  E-value=3e-23  Score=197.20  Aligned_cols=192  Identities=21%  Similarity=0.236  Sum_probs=89.9

Q ss_pred             EEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchh-hhCCCCCcEEeCCCCcCccc---chhhhccccCcEEEeeCC
Q 047959          138 VLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYIDHS---PEDIWMMQKLMHLNFGSI  213 (478)
Q Consensus       138 ~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~l---p~~i~~l~~L~~L~l~~~  213 (478)
                      .++.+++.++.+|..+.  ++|++|++++|.++.+|.. +.++++|++|++++|.+..+   |..+..+++|++|++++|
T Consensus        11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred             EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence            34555555555554332  3555555555555555543 34555555555555554433   344445555555555444


Q ss_pred             CCCCCCCCCCCCCCCCcEeCcccCC-CCCc--cccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc
Q 047959          214 TLPAPPKNNSSPLKNLIFISALHPS-SCTP--DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ  290 (478)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~  290 (478)
                      .+. .+|..+..+++|++|++.++. ...+  ..+..+++|+.|+++++  ......+..+..+++|+.|++++ +.+..
T Consensus        89 ~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~-n~l~~  164 (306)
T 2z66_A           89 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT--HTRVAFNGIFNGLSSLEVLKMAG-NSFQE  164 (306)
T ss_dssp             SEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS--CCEECSTTTTTTCTTCCEEECTT-CEEGG
T ss_pred             ccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC--cCCccchhhcccCcCCCEEECCC-Ccccc
Confidence            322 233334444444444444443 1111  23444455555555544  22222333344444555555544 33332


Q ss_pred             --cCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcc
Q 047959          291 --LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSY  339 (478)
Q Consensus       291 --~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~  339 (478)
                        +|.   .+.. +++|+.|++++|.+++..+..+..+++|++|++++|.+
T Consensus       165 ~~~~~---~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  211 (306)
T 2z66_A          165 NFLPD---IFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF  211 (306)
T ss_dssp             GEECS---CCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             ccchh---HHhh-CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc
Confidence              444   4444 55555555555554444344444455555555554443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.88  E-value=1.2e-22  Score=214.62  Aligned_cols=271  Identities=22%  Similarity=0.230  Sum_probs=213.0

Q ss_pred             CeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEe
Q 047959          134 KHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNF  210 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l  210 (478)
                      +++++|++++|.++.+|.. ++++++|++|++++|.+..+ |..++++++|++|++++|.+..+|. .++++++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            6799999999999977764 99999999999999999955 6778999999999999999999987 5899999999999


Q ss_pred             eCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhc--cCCCCCCEEEEEecC
Q 047959          211 GSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSL--CQLHKLECLKLVNEG  286 (478)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l--~~~~~L~~L~l~~~~  286 (478)
                      ++|.+....|..++++++|++|++.++.  ...+..++++++|++|+++++.  ..+..+..+  ..+++|+.|++++ +
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~~~L~~L~L~~-n  181 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK--IQALKSEELDIFANSSLKKLELSS-N  181 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC--CCCBCHHHHGGGTTCEESEEECTT-C
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc--ccccCHHHhhccccccccEEECCC-C
Confidence            8888776666789999999999999998  5556678899999999999984  333333333  3568999999997 6


Q ss_pred             cccccCcccccccc--------------------------CCCCceEEEEEeecCCCCCcCcccCCCC--CCeEEEeeCc
Q 047959          287 KMRQLSRMILSEYK--------------------------FPPSLTQLSLSNTELVEDPMPTLEELPH--LEVLKLKQNS  338 (478)
Q Consensus       287 ~l~~~p~~~~~~~~--------------------------~~~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~L~~~~  338 (478)
                      .++.++..  .+..                          ..++|+.|++++|.+.+..+..+..++.  |+.|++++|.
T Consensus       182 ~l~~~~~~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~  259 (680)
T 1ziw_A          182 QIKEFSPG--CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN  259 (680)
T ss_dssp             CCCCBCTT--GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred             cccccChh--hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence            66654431  2322                          0256788888888877766777777654  9999999888


Q ss_pred             ccCceeEEeCCCCCcccceeEEecCCCCCc-eeeCCCcccccceeEEecCCCCC-----CCcc----ccCCCCCCCEEEE
Q 047959          339 YLERKLACVGCSSFPQLKILHLKSMLWLEE-WTMGAGAMPKLESLILNPCAYLR-----KLPE----EQWCIKSLCKLEL  408 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~-l~~~~~~~~~L~~L~l~~c~~l~-----~lp~----~l~~l~~L~~L~l  408 (478)
                      +.+..+..  +..+++|++|+++++ .+.. .+..+..+++|+.|++++|....     .+|.    .+..+++|+.|++
T Consensus       260 l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l  336 (680)
T 1ziw_A          260 LNVVGNDS--FAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM  336 (680)
T ss_dssp             CCEECTTT--TTTCTTCCEEECCSC-CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEEC
T ss_pred             cCccCccc--ccCcccccEeeCCCC-ccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEEC
Confidence            76543322  678899999999985 4554 34567889999999998765332     3443    5678999999999


Q ss_pred             ecCc
Q 047959          409 HWPQ  412 (478)
Q Consensus       409 ~~c~  412 (478)
                      ++|.
T Consensus       337 ~~n~  340 (680)
T 1ziw_A          337 EDND  340 (680)
T ss_dssp             CSCC
T ss_pred             CCCc
Confidence            9875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.88  E-value=5.7e-23  Score=195.26  Aligned_cols=221  Identities=22%  Similarity=0.290  Sum_probs=186.7

Q ss_pred             CeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCcc---chhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEE
Q 047959          134 KHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCL---PSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLN  209 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  209 (478)
                      ++|++|++++|.++.+|.. +.++++|++|++++|.+..+   |..+..+++|++|++++|.+..+|..+..+++|++|+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence            5799999999999988876 78999999999999998855   6788889999999999999999998899999999999


Q ss_pred             eeCCCCCCCCC-CCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchh-hHHHhccCCCCCCEEEEEec
Q 047959          210 FGSITLPAPPK-NNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHS-GVSKSLCQLHKLECLKLVNE  285 (478)
Q Consensus       210 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~-~l~~~l~~~~~L~~L~l~~~  285 (478)
                      +++|.+....+ ..+..+++|++|++.++.  ...+..+..+++|++|+++++  ...+ ..+..+..+++|+.|++++ 
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~Ls~-  184 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN--SFQENFLPDIFTELRNLTFLDLSQ-  184 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC--EEGGGEECSCCTTCTTCCEEECTT-
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC--ccccccchhHHhhCcCCCEEECCC-
Confidence            98876654433 578899999999999988  556667899999999999998  4443 4677889999999999998 


Q ss_pred             Cccccc-CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCc-ccceeEEecC
Q 047959          286 GKMRQL-SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFP-QLKILHLKSM  363 (478)
Q Consensus       286 ~~l~~~-p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~  363 (478)
                      +.++.+ |.   .+.. +++|+.|++++|.+++.....+..+++|+.|++++|.+.+..+..  +..++ +|+.|+++++
T Consensus       185 n~l~~~~~~---~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          185 CQLEQLSPT---AFNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE--LQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             SCCCEECTT---TTTT-CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS--CCCCCTTCCEEECTTC
T ss_pred             CCcCCcCHH---HhcC-CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH--HHhhhccCCEEEccCC
Confidence            777766 55   7788 999999999999988776667888999999999999887655433  45553 7888888774

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.88  E-value=3e-23  Score=195.10  Aligned_cols=217  Identities=16%  Similarity=0.123  Sum_probs=116.3

Q ss_pred             eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCccc-chhhhccccCcEEEeeCCC
Q 047959          137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHS-PEDIWMMQKLMHLNFGSIT  214 (478)
Q Consensus       137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~  214 (478)
                      ++++.+++.++.+|..+  .++|++|++++|.+..+| ..+..+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            34555555555555433  235666666666655444 2355556666666666655554 4445556666666665554


Q ss_pred             -CCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc
Q 047959          215 -LPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL  291 (478)
Q Consensus       215 -~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~  291 (478)
                       .....|..+..+++|++|++.++.  ...+..+.++++|++|+++++  ......+..+..+++|+.|++++ +.++.+
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~  168 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN--ALQALPDDTFRDLGNLTHLFLHG-NRISSV  168 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS-SCCCEE
T ss_pred             CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC--cccccCHhHhccCCCccEEECCC-Cccccc
Confidence             333334455555666666655555  222344555666666666655  22222223345556666666665 455555


Q ss_pred             CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecC
Q 047959          292 SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSM  363 (478)
Q Consensus       292 p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  363 (478)
                      |..  .+.. +++|+.|++++|.+++..+..++.+++|+.|++++|.+.+.....  +..+++|+.|+++++
T Consensus       169 ~~~--~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          169 PER--AFRG-LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--LAPLRALQYLRLNDN  235 (285)
T ss_dssp             CTT--TTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH--HTTCTTCCEEECCSS
T ss_pred             CHH--HhcC-ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH--cccCcccCEEeccCC
Confidence            431  2444 566666666666655555555666666666666666555433221  345566666666653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.87  E-value=3.7e-22  Score=199.53  Aligned_cols=102  Identities=20%  Similarity=0.246  Sum_probs=48.3

Q ss_pred             eEeEEEecCCCCCcCC-ccCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEee
Q 047959          135 HLRVLNLGSAVLDQYP-PGLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFG  211 (478)
Q Consensus       135 ~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~  211 (478)
                      +++.|+|++|.++.++ ..+.++++|++|++++|.+..++ ..+.++++|++|++++|.+..+|. .+..+++|++|+++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            3445555555554332 33455555555555555555333 334455555555555555554443 24445555555554


Q ss_pred             CCCCCCCCCCCCCCCCCCcEeCccc
Q 047959          212 SITLPAPPKNNSSPLKNLIFISALH  236 (478)
Q Consensus       212 ~~~~~~~~~~~~~~l~~L~~L~l~~  236 (478)
                      +|.+....+..+..+++|++|++.+
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~  169 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGE  169 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCC
T ss_pred             CCcccccCHHHhhhCcccCEeCCCC
Confidence            4443332233344444444444444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.87  E-value=4.7e-22  Score=199.49  Aligned_cols=217  Identities=19%  Similarity=0.197  Sum_probs=102.1

Q ss_pred             eEeEEEecCCCCCcC-CccCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEee
Q 047959          135 HLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNFG  211 (478)
Q Consensus       135 ~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~  211 (478)
                      ++++|+|++|.++.+ |..+.++++|++|++++|.+..++ ..+.++++|++|++++|.+..+|.. +..+++|++|+++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence            455556666555533 334555556666666655555433 3455555666666665555555433 4455556666655


Q ss_pred             CCCCCCCCCCCCCCCCCCcEeCcccCC--CCCc-cccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcc
Q 047959          212 SITLPAPPKNNSSPLKNLIFISALHPS--SCTP-DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKM  288 (478)
Q Consensus       212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l  288 (478)
                      +|.+....+..+..+++|+.|++.++.  ...+ ..+.++++|+.|++++|.  .. .+ ..+..+++|+.|++++ +.+
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~--l~-~~-~~~~~l~~L~~L~Ls~-N~l  230 (452)
T 3zyi_A          156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN--IK-DM-PNLTPLVGLEELEMSG-NHF  230 (452)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC--CS-SC-CCCTTCTTCCEEECTT-SCC
T ss_pred             CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc--cc-cc-ccccccccccEEECcC-CcC
Confidence            554443333345555555555555433  1111 224445555555555442  11 11 1234444455555544 333


Q ss_pred             ccc-CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEec
Q 047959          289 RQL-SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKS  362 (478)
Q Consensus       289 ~~~-p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~  362 (478)
                      +.+ |.   .+.. +++|+.|++++|.++...+..+..+++|+.|+|++|.+.......  +..+++|+.|+|++
T Consensus       231 ~~~~~~---~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~  299 (452)
T 3zyi_A          231 PEIRPG---SFHG-LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL--FTPLRYLVELHLHH  299 (452)
T ss_dssp             SEECGG---GGTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS--STTCTTCCEEECCS
T ss_pred             cccCcc---cccC-ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH--hccccCCCEEEccC
Confidence            333 22   3444 445555555554444444444444445555555444443222111  33344444444444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.87  E-value=1.9e-21  Score=194.44  Aligned_cols=245  Identities=23%  Similarity=0.268  Sum_probs=132.9

Q ss_pred             CeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCC
Q 047959          134 KHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSI  213 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~  213 (478)
                      ++|++|++++|.++.+| .++++++|++|++++|.++.+|..+   .+|++|++++|.+..+| .++++++|++|++++|
T Consensus       131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence            56777777777777666 4777777777777777777666433   46777777777776666 4677777777777666


Q ss_pred             CCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccC
Q 047959          214 TLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLS  292 (478)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p  292 (478)
                      .+.. +|...   ++|++|++.++. ...+ .++.+++|+.|++++|.  .. .++.   .+++|+.|++++ +.++.+|
T Consensus       206 ~l~~-l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~--l~-~l~~---~~~~L~~L~l~~-N~l~~l~  273 (454)
T 1jl5_A          206 SLKK-LPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL--LK-TLPD---LPPSLEALNVRD-NYLTDLP  273 (454)
T ss_dssp             CCSS-CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC--CS-SCCS---CCTTCCEEECCS-SCCSCCC
T ss_pred             cCCc-CCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCc--CC-cccc---cccccCEEECCC-CcccccC
Confidence            5442 33322   467777777766 4444 46777777777777763  11 1221   235677777765 5565555


Q ss_pred             ccccccccCCCCceEEEEEeecCCC--CCcCc-------------ccCC-CCCCeEEEeeCcccCceeEEeCCCCCcccc
Q 047959          293 RMILSEYKFPPSLTQLSLSNTELVE--DPMPT-------------LEEL-PHLEVLKLKQNSYLERKLACVGCSSFPQLK  356 (478)
Q Consensus       293 ~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~-------------l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~  356 (478)
                      .   .    +++|+.|++++|.+++  ..++.             +..+ ++|++|++++|.+.+.      ...+++|+
T Consensus       274 ~---~----~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~l------p~~~~~L~  340 (454)
T 1jl5_A          274 E---L----PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL------PALPPRLE  340 (454)
T ss_dssp             C---C----CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCC------CCCCTTCC
T ss_pred             c---c----cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccc------cccCCcCC
Confidence            4   1    3556666666665543  11110             1112 2455555555544431      11245566


Q ss_pred             eeEEecCCCCCceeeCCCcccccceeEEecCCCCC--CCccccCCC-------------CCCCEEEEecCc
Q 047959          357 ILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLR--KLPEEQWCI-------------KSLCKLELHWPQ  412 (478)
Q Consensus       357 ~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~--~lp~~l~~l-------------~~L~~L~l~~c~  412 (478)
                      +|+++++ .++.+|.   .+++|+.|++++|....  .+|..+..+             ++|+.|++++++
T Consensus       341 ~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~  407 (454)
T 1jl5_A          341 RLIASFN-HLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP  407 (454)
T ss_dssp             EEECCSS-CCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred             EEECCCC-ccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence            6666553 4455544   35566666666665444  455555444             556666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=1.3e-21  Score=196.25  Aligned_cols=241  Identities=17%  Similarity=0.153  Sum_probs=140.3

Q ss_pred             EeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccc-hhhhccccCcEEEeeCC
Q 047959          136 LRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSP-EDIWMMQKLMHLNFGSI  213 (478)
Q Consensus       136 L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~  213 (478)
                      .+.++.++..++.+|..+.  +++++|++++|.+..+ |..+.++++|++|++++|.+..++ ..+.++++|++|++++|
T Consensus        56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            4567788888888887654  5889999999888865 566888889999999998887775 56778888899988777


Q ss_pred             CCCCCCCCCCCCCCCCcEeCcccCC-CCC-ccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc
Q 047959          214 TLPAPPKNNSSPLKNLIFISALHPS-SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL  291 (478)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~  291 (478)
                      .+....+..+..+++|++|++.++. ... ...+.++++|+.|+++++                          +.++.+
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~--------------------------~~l~~i  187 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL--------------------------KKLEYI  187 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC--------------------------TTCCEE
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC--------------------------CCcccc
Confidence            6664444557777777777777765 222 224555666666666554                          333333


Q ss_pred             CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCce-e
Q 047959          292 SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEW-T  370 (478)
Q Consensus       292 p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~  370 (478)
                      |..  .+.. +++|+.|++++|.+++.  +.+..+++|+.|+|++|.+.+..+..  +..+++|+.|+++++ .++.+ +
T Consensus       188 ~~~--~~~~-l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~  259 (452)
T 3zyi_A          188 SEG--AFEG-LFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGS--FHGLSSLKKLWVMNS-QVSLIER  259 (452)
T ss_dssp             CTT--TTTT-CTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGG--GTTCTTCCEEECTTS-CCCEECT
T ss_pred             Chh--hccC-CCCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCccc--ccCccCCCEEEeCCC-cCceECH
Confidence            320  2333 44444444444444321  23444445555555544443322211  344455555555542 33322 2


Q ss_pred             eCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          371 MGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       371 ~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      ..+..+++|+.|++++|......+..+..+++|+.|+++++|
T Consensus       260 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             HHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence            223445556666665553322222334556666666666543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.86  E-value=6e-21  Score=196.87  Aligned_cols=234  Identities=20%  Similarity=0.153  Sum_probs=187.2

Q ss_pred             CeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCC
Q 047959          134 KHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSI  213 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~  213 (478)
                      ++|++|++++|.++.+|.   .+++|++|++++|.++.+|.   .+++|++|++++|.+..+|.   .+++|++|++++|
T Consensus        61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N  131 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN  131 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred             CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence            678899999999888887   56789999999999888886   67889999999998888887   6788999999777


Q ss_pred             CCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccC
Q 047959          214 TLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLS  292 (478)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p  292 (478)
                      .+. .+|..   +++|++|++.+|. ..++.   .+++|+.|++++|.  . ..++   ..+++|+.|++++ +.++.+|
T Consensus       132 ~l~-~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~--l-~~l~---~~~~~L~~L~Ls~-N~l~~l~  197 (622)
T 3g06_A          132 QLT-SLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQ--L-TSLP---MLPSGLQELSVSD-NQLASLP  197 (622)
T ss_dssp             CCS-CCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC--C-SCCC---CCCTTCCEEECCS-SCCSCCC
T ss_pred             CCC-cCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCC--C-CCCc---ccCCCCcEEECCC-CCCCCCC
Confidence            554 45543   4788999988887 44443   35778889998873  2 2233   4578999999997 8888887


Q ss_pred             ccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeC
Q 047959          293 RMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMG  372 (478)
Q Consensus       293 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~  372 (478)
                      .      . +++|+.|++++|.++...    ..+++|+.|++++|.+++..      ..+++|+.|+++++ .++.+|. 
T Consensus       198 ~------~-~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp------~~l~~L~~L~Ls~N-~L~~lp~-  258 (622)
T 3g06_A          198 T------L-PSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP------VLPSELKELMVSGN-RLTSLPM-  258 (622)
T ss_dssp             C------C-CTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSS-CCSCCCC-
T ss_pred             C------c-cchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC------CCCCcCcEEECCCC-CCCcCCc-
Confidence            5      2 678999999999876422    23589999999999887632      45789999999995 7888876 


Q ss_pred             CCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          373 AGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       373 ~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                        .+++|+.|++++|. ++.+|..+.++++|+.|++++|+
T Consensus       259 --~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          259 --LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             --CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred             --ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence              67999999999985 56889999999999999999987

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.86  E-value=4.1e-22  Score=187.29  Aligned_cols=202  Identities=19%  Similarity=0.226  Sum_probs=173.8

Q ss_pred             CCeEeEEEecCCCCCcCCc-cCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCc-Cccc-chhhhccccCcEE
Q 047959          133 FKHLRVLNLGSAVLDQYPP-GLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSY-IDHS-PEDIWMMQKLMHL  208 (478)
Q Consensus       133 ~~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~-l~~l-p~~i~~l~~L~~L  208 (478)
                      .+.|+.|++++|.++.++. .+..+++|++|++++|.+..+ |..+..+++|++|++++|. +..+ |..+..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            4689999999999997664 589999999999999999966 6789999999999999995 8888 6778899999999


Q ss_pred             EeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCc-cccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecC
Q 047959          209 NFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTP-DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEG  286 (478)
Q Consensus       209 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~  286 (478)
                      ++++|.+....|..+..+++|++|++.++. ...+ ..++.+++|+.|++++|  ......+..+..+++|+.|++++ +
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~-n  187 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN--RISSVPERAFRGLHSLDRLLLHQ-N  187 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCS-S
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC--cccccCHHHhcCccccCEEECCC-C
Confidence            998888877777889999999999999998 4444 45889999999999998  34443444688899999999998 7


Q ss_pred             ccccc-CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccC
Q 047959          287 KMRQL-SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLE  341 (478)
Q Consensus       287 ~l~~~-p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  341 (478)
                      .+..+ |.   .+.. +++|+.|++++|.+++.....+..+++|+.|++++|.+..
T Consensus       188 ~l~~~~~~---~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          188 RVAHVHPH---AFRD-LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CCCEECTT---TTTT-CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cccccCHh---HccC-cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            77765 66   7888 9999999999999987666678999999999999998764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.85  E-value=2e-21  Score=194.17  Aligned_cols=240  Identities=17%  Similarity=0.149  Sum_probs=156.9

Q ss_pred             EeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccc-hhhhccccCcEEEeeCC
Q 047959          136 LRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSP-EDIWMMQKLMHLNFGSI  213 (478)
Q Consensus       136 L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~  213 (478)
                      .+.++.++..++.+|..+.  +++++|++++|.+..++ ..+.++++|++|++++|.+..++ ..+.++++|++|++++|
T Consensus        45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            4578888888999998765  58999999999999665 67889999999999999988886 56888999999999888


Q ss_pred             CCCCCCCCCCCCCCCCcEeCcccCC-CCC-ccccCCCCCCcEEEEEecCCcchhhH-HHhccCCCCCCEEEEEecCcccc
Q 047959          214 TLPAPPKNNSSPLKNLIFISALHPS-SCT-PDILGRLPNVQTLRISGDLSYYHSGV-SKSLCQLHKLECLKLVNEGKMRQ  290 (478)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l-~~~l~~~~~L~~L~l~~~~~l~~  290 (478)
                      .+....+..+..+++|++|++.++. ... ...+.++++|+.|+++++.  ....+ ...+..+++|+.|++++ +.++.
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~~~~~~l~~L~~L~L~~-n~l~~  199 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK--RLSYISEGAFEGLSNLRYLNLAM-CNLRE  199 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT--TCCEECTTTTTTCSSCCEEECTT-SCCSS
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC--CcceeCcchhhcccccCeecCCC-CcCcc
Confidence            7665445568888888888888876 322 3356677777777777652  22222 22455566666666665 55555


Q ss_pred             cCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCcee
Q 047959          291 LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWT  370 (478)
Q Consensus       291 ~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~  370 (478)
                      +|    .+.. +++|+.|++++|.+++..+..+..+++|+.|+|++|.+.......  +..+++|+.|+|+++ .++.++
T Consensus       200 ~~----~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~  271 (440)
T 3zyj_A          200 IP----NLTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA--FDNLQSLVEINLAHN-NLTLLP  271 (440)
T ss_dssp             CC----CCTT-CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTS--STTCTTCCEEECTTS-CCCCCC
T ss_pred             cc----ccCC-CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhh--hcCCCCCCEEECCCC-CCCccC
Confidence            65    3444 566666666666655555555566666666666655554332211  344555555555552 344333


Q ss_pred             eC-CCcccccceeEEecCC
Q 047959          371 MG-AGAMPKLESLILNPCA  388 (478)
Q Consensus       371 ~~-~~~~~~L~~L~l~~c~  388 (478)
                      .. +..+++|+.|++++|+
T Consensus       272 ~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          272 HDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TTTTSSCTTCCEEECCSSC
T ss_pred             hhHhccccCCCEEEcCCCC
Confidence            22 2344555555555444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.84  E-value=1.2e-22  Score=193.45  Aligned_cols=243  Identities=18%  Similarity=0.184  Sum_probs=115.7

Q ss_pred             CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCC--ccchhhh-------CCCCCcEEeCCCCcCc-ccchhh-
Q 047959          131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLK--CLPSLLC-------TLLNLQTLEMPSSYID-HSPEDI-  199 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~--~lp~~~~-------~l~~L~~L~l~~~~l~-~lp~~i-  199 (478)
                      ...+.|+.|++++|.+ .+|..+...  |+.|++++|.+.  .+|..+.       ++++|++|++++|.+. .+|..+ 
T Consensus        40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             ccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            4445556666666665 555544332  556666665553  3444443       4566666666666554 345444 


Q ss_pred             -hccccCcEEEeeCCCCCCCCCCCCCCC-----CCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhh--HHH
Q 047959          200 -WMMQKLMHLNFGSITLPAPPKNNSSPL-----KNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSG--VSK  269 (478)
Q Consensus       200 -~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~--l~~  269 (478)
                       ..+++|++|++++|.+... |..+..+     ++|++|++.++.  ...+..++++++|+.|++++|.  ..+.  .+.
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~  193 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP--ELGERGLIS  193 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT--TCHHHHHHH
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC--cCcchHHHH
Confidence             5566666666655554433 4444333     555555555555  2222445555555666555552  2211  222


Q ss_pred             hc--cCCCCCCEEEEEecCcccccCccc-cccccCCCCceEEEEEeecCCCCCc-CcccCCCCCCeEEEeeCcccCceeE
Q 047959          270 SL--CQLHKLECLKLVNEGKMRQLSRMI-LSEYKFPPSLTQLSLSNTELVEDPM-PTLEELPHLEVLKLKQNSYLERKLA  345 (478)
Q Consensus       270 ~l--~~~~~L~~L~l~~~~~l~~~p~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~  345 (478)
                      .+  ..+++|+.|++++ +.++.+|... ..+.. +++|+.|++++|.+.+..+ ..+..+++|++|++++|.++. .+.
T Consensus       194 ~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~  270 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRN-AGMETPSGVCSALAAA-RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPK  270 (312)
T ss_dssp             HSCTTSCTTCCEEECTT-SCCCCHHHHHHHHHHT-TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCS
T ss_pred             HHHhccCCCCCEEECCC-CcCcchHHHHHHHHhc-CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhh
Confidence            33  4555555555554 4444222100 01123 4555555555555544331 233444555555555555441 111


Q ss_pred             EeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCC
Q 047959          346 CVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCA  388 (478)
Q Consensus       346 ~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~  388 (478)
                      .  +  +++|++|++++ +.++.+|. ...+++|+.|++++|+
T Consensus       271 ~--~--~~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          271 G--L--PAKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             S--C--CSEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred             h--c--cCCceEEECCC-CCCCCChh-HhhCCCCCEEeccCCC
Confidence            1  1  14455555554 23444433 4444555555555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.84  E-value=1.8e-22  Score=192.76  Aligned_cols=237  Identities=15%  Similarity=0.069  Sum_probs=121.4

Q ss_pred             ccCCCCeEeEEEecCCCCCcCC-ccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcE
Q 047959          129 FCKKFKHLRVLNLGSAVLDQYP-PGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMH  207 (478)
Q Consensus       129 ~~~~~~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~  207 (478)
                      ++..+++|++|++++|.++.++ ..+..+++|++|++++|.+...++ +..+++|++|++++|.+..+|.    .++|++
T Consensus        29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~  103 (317)
T 3o53_A           29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIET  103 (317)
T ss_dssp             HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred             HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCE
Confidence            3455566777777777766544 346677777777777777665443 6667777777777776665542    366777


Q ss_pred             EEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CC-CccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEec
Q 047959          208 LNFGSITLPAPPKNNSSPLKNLIFISALHPS-SC-TPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE  285 (478)
Q Consensus       208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~  285 (478)
                      |++++|.+....+.   .+++|++|++.++. .. .+..++.+++|+.|++++|                          
T Consensus       104 L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N--------------------------  154 (317)
T 3o53_A          104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN--------------------------  154 (317)
T ss_dssp             EECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS--------------------------
T ss_pred             EECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC--------------------------
Confidence            77765544332221   23455555555554 22 2223444555555555554                          


Q ss_pred             CcccccC-cccccc-ccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecC
Q 047959          286 GKMRQLS-RMILSE-YKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSM  363 (478)
Q Consensus       286 ~~l~~~p-~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  363 (478)
                       .++.++ .   .+ .. +++|+.|++++|.++..  +....+++|++|++++|.+.+...  . +..+++|++|+++++
T Consensus       155 -~l~~~~~~---~~~~~-l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~--~-~~~l~~L~~L~L~~N  224 (317)
T 3o53_A          155 -EIDTVNFA---ELAAS-SDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGP--E-FQSAAGVTWISLRNN  224 (317)
T ss_dssp             -CCCEEEGG---GGGGG-TTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECG--G-GGGGTTCSEEECTTS
T ss_pred             -CCCcccHH---HHhhc-cCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchh--h-hcccCcccEEECcCC
Confidence             333221 1   12 23 44555555555544322  222234555555555554432211  1 334455555555552


Q ss_pred             CCCCceeeCCCcccccceeEEecCCCC-CCCccccCCCCCCCEEEEec
Q 047959          364 LWLEEWTMGAGAMPKLESLILNPCAYL-RKLPEEQWCIKSLCKLELHW  410 (478)
Q Consensus       364 ~~l~~l~~~~~~~~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~  410 (478)
                       .++.+|.....+++|+.|++++|+.. ..+|..+..+++|+.+++.+
T Consensus       225 -~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          225 -KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             -CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             -cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence             44455544455555555555555543 33444444555555554443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.83  E-value=4.2e-21  Score=191.97  Aligned_cols=243  Identities=21%  Similarity=0.169  Sum_probs=124.8

Q ss_pred             CCCCeEeEEEecCCCCC-cCCccCCCCCCC-------------ceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccc
Q 047959          131 KKFKHLRVLNLGSAVLD-QYPPGLENLFYL-------------KYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSP  196 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~-~lp~~~~~l~~L-------------~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp  196 (478)
                      +++++|++|++++|.+. .+|.+++.+.+|             ++|++++|.++.+|..   .++|++|++++|.+..+|
T Consensus        31 ~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp  107 (454)
T 1jl5_A           31 ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELP  107 (454)
T ss_dssp             ---CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCC
T ss_pred             hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC---cCCCCEEEccCCcCCccc
Confidence            44555555555555544 455555544432             5555555555544431   245555555555555555


Q ss_pred             hhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCC
Q 047959          197 EDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLH  275 (478)
Q Consensus       197 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~  275 (478)
                      ..   +++|++|++++|.+.. ++..   .++|++|++.++. ...+ .++++++|++|++++|.  .. .++.   ..+
T Consensus       108 ~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~--l~-~lp~---~~~  173 (454)
T 1jl5_A          108 EL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS--LK-KLPD---LPP  173 (454)
T ss_dssp             CC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC--CS-CCCC---CCT
T ss_pred             cc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc--Cc-ccCC---Ccc
Confidence            32   2455555554443321 2211   1456666666655 3333 46666666666666652  11 1221   123


Q ss_pred             CCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCccc
Q 047959          276 KLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQL  355 (478)
Q Consensus       276 ~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L  355 (478)
                      +|+.|++++ +.++.+|    .++. +++|+.|++++|.+++. +.   ..++|++|++++|.+.. .+  . +..+++|
T Consensus       174 ~L~~L~L~~-n~l~~l~----~~~~-l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~n~l~~-lp--~-~~~l~~L  239 (454)
T 1jl5_A          174 SLEFIAAGN-NQLEELP----ELQN-LPFLTAIYADNNSLKKL-PD---LPLSLESIVAGNNILEE-LP--E-LQNLPFL  239 (454)
T ss_dssp             TCCEEECCS-SCCSSCC----CCTT-CTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSS-CC--C-CTTCTTC
T ss_pred             cccEEECcC-CcCCcCc----cccC-CCCCCEEECCCCcCCcC-CC---CcCcccEEECcCCcCCc-cc--c-cCCCCCC
Confidence            666666665 5555555    3455 66666666666665431 11   12466666666665552 22  1 4566777


Q ss_pred             ceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          356 KILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       356 ~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      ++|+++++ .++.+|.   .+++|+.|++++|. ++.+|..   +++|+.|++++|.
T Consensus       240 ~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N~  288 (454)
T 1jl5_A          240 TTIYADNN-LLKTLPD---LPPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSENI  288 (454)
T ss_dssp             CEEECCSS-CCSSCCS---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC
T ss_pred             CEEECCCC-cCCcccc---cccccCEEECCCCc-ccccCcc---cCcCCEEECcCCc
Confidence            77777763 4555543   24667777777664 3345442   3566666666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.83  E-value=1.5e-22  Score=192.73  Aligned_cols=244  Identities=19%  Similarity=0.164  Sum_probs=196.9

Q ss_pred             CCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCc--ccchhhh-------ccccCcEEEeeCCCCCCCCCCCC
Q 047959          153 LENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYID--HSPEDIW-------MMQKLMHLNFGSITLPAPPKNNS  223 (478)
Q Consensus       153 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~--~lp~~i~-------~l~~L~~L~l~~~~~~~~~~~~~  223 (478)
                      ++...+|++|++++|.+ .+|..+...  |++|+++++.+.  .+|..+.       ++++|++|++++|.+....|..+
T Consensus        39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            45677899999999999 899877754  999999999774  4676665       79999999999999888888876


Q ss_pred             --CCCCCCcEeCcccCC-CCCccccCCC-----CCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc---cC
Q 047959          224 --SPLKNLIFISALHPS-SCTPDILGRL-----PNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ---LS  292 (478)
Q Consensus       224 --~~l~~L~~L~l~~~~-~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~---~p  292 (478)
                        ..+++|++|++.++. ...+..++.+     ++|++|++++|  ......+..+..+++|+.|++++ +.+..   +|
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~  192 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA--HSLNFSCEQVRVFPALSTLDLSD-NPELGERGLI  192 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC--SCCCCCTTTCCCCSSCCEEECCS-CTTCHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC--CCccchHHHhccCCCCCEEECCC-CCcCcchHHH
Confidence              899999999999998 4446666666     99999999999  45555567889999999999998 55432   33


Q ss_pred             cccccc--ccCCCCceEEEEEeecCCCC--C-cCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCC
Q 047959          293 RMILSE--YKFPPSLTQLSLSNTELVED--P-MPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLE  367 (478)
Q Consensus       293 ~~~~~~--~~~~~~L~~L~l~~~~~~~~--~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~  367 (478)
                      .   .+  .. +++|+.|++++|.++..  . ...+..+++|++|++++|.+.+..+... ...+++|++|+++++ .++
T Consensus       193 ~---~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~Ls~N-~l~  266 (312)
T 1wwl_A          193 S---ALCPLK-FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS-CDWPSQLNSLNLSFT-GLK  266 (312)
T ss_dssp             H---HSCTTS-CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC-CCCCTTCCEEECTTS-CCS
T ss_pred             H---HHHhcc-CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh-hhhcCCCCEEECCCC-ccC
Confidence            3   33  66 89999999999998631  1 1234578999999999999887653222 566799999999994 678


Q ss_pred             ceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          368 EWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       368 ~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      .+|....  ++|+.|++++|. ++.+|. +..+++|+.|++++++
T Consensus       267 ~ip~~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          267 QVPKGLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             SCCSSCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred             hhhhhcc--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence            8877655  899999999985 566677 8899999999999986

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.82  E-value=3.8e-20  Score=172.97  Aligned_cols=201  Identities=20%  Similarity=0.214  Sum_probs=161.1

Q ss_pred             CeEeEEEecCCCCCcCCc-cCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccc-hhhhccccCcEEEe
Q 047959          134 KHLRVLNLGSAVLDQYPP-GLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSP-EDIWMMQKLMHLNF  210 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l  210 (478)
                      +.|++|++++|.++.++. .+.++++|++|++++|.+..++. .+..+++|++|++++|.+..++ ..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            468999999999986665 68899999999999999997765 6888999999999999888876 56889999999999


Q ss_pred             eCCCCCCCCCCCCCCCCCCcEeCcccCC-CC--CccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCC----EEEEE
Q 047959          211 GSITLPAPPKNNSSPLKNLIFISALHPS-SC--TPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLE----CLKLV  283 (478)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~--~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~----~L~l~  283 (478)
                      ++|.+....+..+..+++|++|++.++. ..  .+..++.+++|+.|++++|.  .....+..+..+++|+    .|+++
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~l~l~L~ls  185 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLLNLSLDLS  185 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC--CCEECGGGGHHHHTCTTCCEEEECC
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC--CCcCCHHHhhhhhhccccceeeecC
Confidence            8887766555578899999999999888 33  57888999999999999984  3332233333344444    78888


Q ss_pred             ecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccC
Q 047959          284 NEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLE  341 (478)
Q Consensus       284 ~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  341 (478)
                      + +.++.+|.   .... ..+|+.|++++|.++......+..+++|+.|++++|.+..
T Consensus       186 ~-n~l~~~~~---~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          186 L-NPMNFIQP---GAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             S-SCCCEECT---TSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             C-CcccccCc---cccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            7 78888876   5555 6689999999999877666677889999999999888753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.82  E-value=4.2e-20  Score=193.26  Aligned_cols=289  Identities=17%  Similarity=0.138  Sum_probs=208.6

Q ss_pred             CCCCCeeeec---------CccccCCCCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccch-hhhCCCCCcE
Q 047959          116 SKSDHLALIH---------CENFCKKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQT  184 (478)
Q Consensus       116 ~~~~~lr~l~---------~~~~~~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~  184 (478)
                      ..+++|+.|+         ....|.++++|++|+|++|.++.+|.. |.++++|++|++++|.++.+|. .++++++|++
T Consensus        73 ~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~  152 (635)
T 4g8a_A           73 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE  152 (635)
T ss_dssp             TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred             hCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCe
Confidence            4567788872         355678899999999999999877764 8899999999999999988775 4788999999


Q ss_pred             EeCCCCcCcc--cchhhhccccCcEEEeeCCCCCCCCC------------------------------------------
Q 047959          185 LEMPSSYIDH--SPEDIWMMQKLMHLNFGSITLPAPPK------------------------------------------  220 (478)
Q Consensus       185 L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~------------------------------------------  220 (478)
                      |++++|.+..  +|..++.+++|++|++++|.+....+                                          
T Consensus       153 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~  232 (635)
T 4g8a_A          153 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR  232 (635)
T ss_dssp             EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred             eccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhh
Confidence            9999997764  46778888999999887662211000                                          


Q ss_pred             --------------------------------------------------------------------------------
Q 047959          221 --------------------------------------------------------------------------------  220 (478)
Q Consensus       221 --------------------------------------------------------------------------------  220 (478)
                                                                                                      
T Consensus       233 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~  312 (635)
T 4g8a_A          233 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFS  312 (635)
T ss_dssp             SCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEE
T ss_pred             cccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccc
Confidence                                                                                            


Q ss_pred             ----------------------------------------------------CCCCCCCCCcEeCcccCC----------
Q 047959          221 ----------------------------------------------------NNSSPLKNLIFISALHPS----------  238 (478)
Q Consensus       221 ----------------------------------------------------~~~~~l~~L~~L~l~~~~----------  238 (478)
                                                                          .....+++|+.|++..+.          
T Consensus       313 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~  392 (635)
T 4g8a_A          313 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS  392 (635)
T ss_dssp             EESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHH
T ss_pred             ccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccc
Confidence                                                                000112233333333222          


Q ss_pred             -----------------CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccC
Q 047959          239 -----------------SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKF  301 (478)
Q Consensus       239 -----------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~  301 (478)
                                       ...+..+..+++|+.+++..+. .........+..+++++.++++. +.+...+..  .+.. 
T Consensus       393 ~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~l~~l~~l~ls~-n~l~~~~~~--~~~~-  467 (635)
T 4g8a_A          393 DFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISH-THTRVAFNG--IFNG-  467 (635)
T ss_dssp             HHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSE-EESTTSSCTTTTCTTCCEEECTT-SCCEECCTT--TTTT-
T ss_pred             hhhhhhhhhhhccccccccccccccccccccchhhhhcc-ccccccccccccccccccccccc-ccccccccc--cccc-
Confidence                             0011234567788888887763 11112234567889999999987 666654431  5556 


Q ss_pred             CCCceEEEEEeecCCC-CCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceee-CCCccccc
Q 047959          302 PPSLTQLSLSNTELVE-DPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKL  379 (478)
Q Consensus       302 ~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~~~~L  379 (478)
                      +++|+.|++++|.... ..+..+..+++|++|+|++|.+.+..+..  +.++++|++|+|+++ .++.++. .+..+++|
T Consensus       468 ~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~--f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L  544 (635)
T 4g8a_A          468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA--FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSL  544 (635)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTS-CCCBCCCGGGTTCTTC
T ss_pred             chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH--HcCCCCCCEEECCCC-cCCCCChhHHhCCCCC
Confidence            8999999999997433 45567899999999999999887654433  788999999999994 6777654 45789999


Q ss_pred             ceeEEecCCCCCCCccccCCC-CCCCEEEEecCc
Q 047959          380 ESLILNPCAYLRKLPEEQWCI-KSLCKLELHWPQ  412 (478)
Q Consensus       380 ~~L~l~~c~~l~~lp~~l~~l-~~L~~L~l~~c~  412 (478)
                      +.|++++|......|..+.++ ++|+.|+++++|
T Consensus       545 ~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             CEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             CEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            999999998777777788887 689999999754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.82  E-value=1.2e-22  Score=193.98  Aligned_cols=236  Identities=17%  Similarity=0.147  Sum_probs=173.8

Q ss_pred             CeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEee
Q 047959          134 KHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFG  211 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~  211 (478)
                      ..++..+++.+.+...+.. +..+++|++|++++|.+..++ ..+..+++|++|++++|.+..+++ +..+++|++|+++
T Consensus        10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls   88 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN   88 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred             CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence            4466777777776633333 456678888888888888655 568888888888888888776665 7788888888886


Q ss_pred             CCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc
Q 047959          212 SITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL  291 (478)
Q Consensus       212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~  291 (478)
                      +|.+..     +...                      ++|+.|++++|.  ..+..   ...+++|+.|++++ +.++.+
T Consensus        89 ~n~l~~-----l~~~----------------------~~L~~L~l~~n~--l~~~~---~~~~~~L~~L~l~~-N~l~~~  135 (317)
T 3o53_A           89 NNYVQE-----LLVG----------------------PSIETLHAANNN--ISRVS---CSRGQGKKNIYLAN-NKITML  135 (317)
T ss_dssp             SSEEEE-----EEEC----------------------TTCCEEECCSSC--CSEEE---ECCCSSCEEEECCS-SCCCSG
T ss_pred             CCcccc-----ccCC----------------------CCcCEEECCCCc--cCCcC---ccccCCCCEEECCC-CCCCCc
Confidence            664321     1112                      445555555442  11111   12356788888887 667665


Q ss_pred             CccccccccCCCCceEEEEEeecCCCCCcCcc-cCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCcee
Q 047959          292 SRMILSEYKFPPSLTQLSLSNTELVEDPMPTL-EELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWT  370 (478)
Q Consensus       292 p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~  370 (478)
                      +..  .+.. +++|+.|++++|.+.+..+..+ ..+++|++|++++|.+....  .  ...+++|++|++++ +.++.++
T Consensus       136 ~~~--~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~--~~~l~~L~~L~Ls~-N~l~~l~  207 (317)
T 3o53_A          136 RDL--DEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--G--QVVFAKLKTLDLSS-NKLAFMG  207 (317)
T ss_dssp             GGB--CTGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--C--CCCCTTCCEEECCS-SCCCEEC
T ss_pred             cch--hhhc-cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--c--ccccccCCEEECCC-CcCCcch
Confidence            431  5667 8999999999999877666655 47899999999999886542  1  45689999999999 4788888


Q ss_pred             eCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          371 MGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       371 ~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      .....+++|+.|++++|. ++.+|..+..+++|+.|++++|+
T Consensus       208 ~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          208 PEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             GGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred             hhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCC
Confidence            778899999999999985 56788888999999999999987

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=9.3e-22  Score=198.64  Aligned_cols=235  Identities=15%  Similarity=0.086  Sum_probs=178.3

Q ss_pred             CCCCeEeEEEecCCCCCcCC-ccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEE
Q 047959          131 KKFKHLRVLNLGSAVLDQYP-PGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLN  209 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  209 (478)
                      ..+++|++|+|++|.++.++ ..++.+++|++|++++|.+...++ ++.+++|++|++++|.+..+|.    .++|++|+
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~  105 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLH  105 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence            45668999999999998665 569999999999999999986654 8899999999999998888764    38999999


Q ss_pred             eeCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhcc-CCCCCCEEEEEecC
Q 047959          210 FGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLC-QLHKLECLKLVNEG  286 (478)
Q Consensus       210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~-~~~~L~~L~l~~~~  286 (478)
                      +++|.+....+.   .+++|+.|++.+|.  ...+..++.+++|+.|++++|  ...+..+..+. .+++|+.|++++ +
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~l~~~l~~L~~L~Ls~-N  179 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN--EIDTVNFAELAASSDTLEHLNLQY-N  179 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS--CCCEEEGGGGGGGTTTCCEEECTT-S
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC--CCCCcChHHHhhhCCcccEEecCC-C
Confidence            988876654443   35789999998887  444566788889999999888  44444555554 678888888887 7


Q ss_pred             cccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCC
Q 047959          287 KMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWL  366 (478)
Q Consensus       287 ~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l  366 (478)
                      .++.+|.    ... +++|+.|++++|.+++. ++.+..+++|+.|+|++|.+.+.  +.. +..+++|+.|++++++-.
T Consensus       180 ~l~~~~~----~~~-l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~l--p~~-l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          180 FIYDVKG----QVV-FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLI--EKA-LRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCCEEEC----CCC-CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEE--CTT-CCCCTTCCEEECTTCCBC
T ss_pred             ccccccc----ccc-CCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCccc--chh-hccCCCCCEEEcCCCCCc
Confidence            7777764    344 78888888888887653 34477888888888888887642  212 566788888888875433


Q ss_pred             -CceeeCCCcccccceeEEe
Q 047959          367 -EEWTMGAGAMPKLESLILN  385 (478)
Q Consensus       367 -~~l~~~~~~~~~L~~L~l~  385 (478)
                       ..+|.....++.|+.+.+.
T Consensus       251 c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          251 CGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH
T ss_pred             CcchHHHHHhCCCCcEEecc
Confidence             1455555667777777775

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.81  E-value=2.2e-19  Score=167.14  Aligned_cols=198  Identities=23%  Similarity=0.268  Sum_probs=138.5

Q ss_pred             eEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccchhh-hccccCcEEEeeC
Q 047959          135 HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPEDI-WMMQKLMHLNFGS  212 (478)
Q Consensus       135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~  212 (478)
                      ..+.++++++.++.+|..+.  .+|++|++++|.+..+|. .+.++++|++|++++|.+..+|..+ ..+++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            35688899888888887654  588999999998887775 6888899999999999888887654 6788999999977


Q ss_pred             CCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc
Q 047959          213 ITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ  290 (478)
Q Consensus       213 ~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~  290 (478)
                      |.+....+..+..+++|++|++.++.  ...+..++.+++|+.|+++++.  .....+..+..+++|+.|++++ +.++.
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~-n~l~~  171 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE--LQSLPKGVFDKLTSLKELRLYN-NQLKR  171 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS-SCCSC
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc--CCccCHhHccCCcccceeEecC-CcCcE
Confidence            77665455556778888888887776  3333446677777777777762  2222233355667777777765 55665


Q ss_pred             cCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCccc
Q 047959          291 LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYL  340 (478)
Q Consensus       291 ~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  340 (478)
                      +|..  .+.. +++|+.|++++|.++......+..+++|+.|+|++|.+.
T Consensus       172 ~~~~--~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          172 VPEG--AFDK-LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCTT--TTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             eChh--Hhcc-CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            5541  2455 667777777777666554445666677777777666553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.81  E-value=1.8e-19  Score=185.89  Aligned_cols=236  Identities=17%  Similarity=0.097  Sum_probs=191.1

Q ss_pred             CCeeeec-----CccccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCc
Q 047959          119 DHLALIH-----CENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYID  193 (478)
Q Consensus       119 ~~lr~l~-----~~~~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~  193 (478)
                      ++++.|+     ...++..+++|++|+|++|.++.+|.   .+++|++|++++|.++.+|.   .+.+|++|++++|.+.
T Consensus        61 ~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~  134 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLT  134 (622)
T ss_dssp             TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCS
T ss_pred             CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCC
Confidence            5677772     34555678999999999999999887   77899999999999999987   6789999999999999


Q ss_pred             ccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhcc
Q 047959          194 HSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLC  272 (478)
Q Consensus       194 ~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~  272 (478)
                      .+|..   +++|++|++++|.+. .+|.   .+.+|+.|++.++. ..++   ..+++|+.|++++|.  .. .++.   
T Consensus       135 ~lp~~---l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~--l~-~l~~---  198 (622)
T 3g06_A          135 SLPVL---PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQ--LA-SLPT---  198 (622)
T ss_dssp             CCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC--CS-CCCC---
T ss_pred             cCCCC---CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCC--CC-CCCC---
Confidence            99874   589999999888655 4454   35789999999888 5555   567999999999984  22 2322   


Q ss_pred             CCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCC
Q 047959          273 QLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSF  352 (478)
Q Consensus       273 ~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~  352 (478)
                      .+++|+.|++++ +.++.+|.      . +++|+.|++++|.+++..    ..+++|+.|+|++|.+....      ..+
T Consensus       199 ~~~~L~~L~L~~-N~l~~l~~------~-~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp------~~~  260 (622)
T 3g06_A          199 LPSELYKLWAYN-NRLTSLPA------L-PSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLP------MLP  260 (622)
T ss_dssp             CCTTCCEEECCS-SCCSSCCC------C-CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCC------CCC
T ss_pred             ccchhhEEECcC-CcccccCC------C-CCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCC------ccc
Confidence            357999999998 88888885      2 689999999999987532    56789999999999887432      257


Q ss_pred             cccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCcc
Q 047959          353 PQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPE  395 (478)
Q Consensus       353 ~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~  395 (478)
                      ++|+.|++++| .++.+|..+..+++|+.|++++|+..+..|.
T Consensus       261 ~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          261 SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             TTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             ccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            89999999995 7888988889999999999999986654444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=2.6e-19  Score=169.97  Aligned_cols=195  Identities=20%  Similarity=0.241  Sum_probs=156.4

Q ss_pred             CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEe
Q 047959          131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNF  210 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l  210 (478)
                      ..+++|+.|++++|.++.++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred             HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence            45678999999999998887 48899999999999999998887 899999999999999998886 5889999999999


Q ss_pred             eCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959          211 GSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR  289 (478)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~  289 (478)
                      ++|.+.. ++ .+..+++|++|++.++. ...+ .++.+++|+.|++++|.  ... ++. +..+++|+.|++++ +.++
T Consensus       115 ~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~--l~~-~~~-l~~l~~L~~L~l~~-n~l~  186 (308)
T 1h6u_A          115 TSTQITD-VT-PLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQ--VSD-LTP-LANLSKLTTLKADD-NKIS  186 (308)
T ss_dssp             TTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSC--CCC-CGG-GTTCTTCCEEECCS-SCCC
T ss_pred             CCCCCCC-ch-hhcCCCCCCEEECCCCccCcCc-cccCCCCccEEEccCCc--CCC-Chh-hcCCCCCCEEECCC-CccC
Confidence            8776654 44 38888999999998887 3333 37888889999998873  222 222 77888888888887 7777


Q ss_pred             ccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCce
Q 047959          290 QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERK  343 (478)
Q Consensus       290 ~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~  343 (478)
                      .++    .+.. +++|+.|++++|.+.+..  .+..+++|+.|++++|.+....
T Consensus       187 ~~~----~l~~-l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          187 DIS----PLAS-LPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             CCG----GGGG-CTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred             cCh----hhcC-CCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCC
Confidence            776    3566 888888888888876543  4788888888888888876543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.79  E-value=1.4e-22  Score=203.87  Aligned_cols=269  Identities=19%  Similarity=0.129  Sum_probs=194.2

Q ss_pred             eEeEEEecCCCCC-----cCCccCCCCCCCceEeecCCCCCc-cchhhh-----CCCCCcEEeCCCCcCcc-----cchh
Q 047959          135 HLRVLNLGSAVLD-----QYPPGLENLFYLKYLKLNIPSLKC-LPSLLC-----TLLNLQTLEMPSSYIDH-----SPED  198 (478)
Q Consensus       135 ~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~i~~-lp~~~~-----~l~~L~~L~l~~~~l~~-----lp~~  198 (478)
                      +|++|++++|.++     .++..+..+++|++|++++|.+.. .+..+.     ...+|++|++++|.+..     ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            7999999999987     457778899999999999998772 222222     25679999999997754     4566


Q ss_pred             hhccccCcEEEeeCCCCCCCCCCCCC-----CCCCCcEeCcccCC-CC-----CccccCCCCCCcEEEEEecCCcchhh-
Q 047959          199 IWMMQKLMHLNFGSITLPAPPKNNSS-----PLKNLIFISALHPS-SC-----TPDILGRLPNVQTLRISGDLSYYHSG-  266 (478)
Q Consensus       199 i~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~-~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~-  266 (478)
                      +..+++|++|++++|.+....+..+.     ..++|++|++.+|. ..     .+..+..+++|++|++++|.  .... 
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--l~~~~  243 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK--LGDVG  243 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB--CHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc--CChHH
Confidence            77889999999987765432222221     35689999999887 22     45667788999999999983  3322 


Q ss_pred             ---HHH-hccCCCCCCEEEEEecCcccc-----cCccccccccCCCCceEEEEEeecCCCCCcCccc-----CCCCCCeE
Q 047959          267 ---VSK-SLCQLHKLECLKLVNEGKMRQ-----LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLE-----ELPHLEVL  332 (478)
Q Consensus       267 ---l~~-~l~~~~~L~~L~l~~~~~l~~-----~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L  332 (478)
                         +.. ....+++|+.|++++ +.++.     ++.   .+.. +++|+.|++++|.+.+..+..+.     ..++|++|
T Consensus       244 ~~~l~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~---~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L  318 (461)
T 1z7x_W          244 MAELCPGLLHPSSRLRTLWIWE-CGITAKGCGDLCR---VLRA-KESLKELSLAGNELGDEGARLLCETLLEPGCQLESL  318 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTT-SCCCHHHHHHHHH---HHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             HHHHHHHHhcCCCCceEEECcC-CCCCHHHHHHHHH---HHhh-CCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence               222 334688999999998 56665     676   6777 89999999999987544333332     23699999


Q ss_pred             EEeeCcccCcee---EEeCCCCCcccceeEEecCCCCCcee-eCCC-----cccccceeEEecCCCCC----CCccccCC
Q 047959          333 KLKQNSYLERKL---ACVGCSSFPQLKILHLKSMLWLEEWT-MGAG-----AMPKLESLILNPCAYLR----KLPEEQWC  399 (478)
Q Consensus       333 ~L~~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~-----~~~~L~~L~l~~c~~l~----~lp~~l~~  399 (478)
                      ++++|.+++...   ... +..+++|++|+++++ .++... ....     ..++|+.|++++|....    .+|..+..
T Consensus       319 ~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  396 (461)
T 1z7x_W          319 WVKSCSFTAACCSHFSSV-LAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA  396 (461)
T ss_dssp             ECTTSCCBGGGHHHHHHH-HHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred             EcCCCCCchHHHHHHHHH-HhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh
Confidence            999998775431   111 345689999999986 555321 1111     26799999999996543    67777888


Q ss_pred             CCCCCEEEEecCc
Q 047959          400 IKSLCKLELHWPQ  412 (478)
Q Consensus       400 l~~L~~L~l~~c~  412 (478)
                      +++|++|++++|+
T Consensus       397 ~~~L~~L~l~~N~  409 (461)
T 1z7x_W          397 NHSLRELDLSNNC  409 (461)
T ss_dssp             CCCCCEEECCSSS
T ss_pred             CCCccEEECCCCC
Confidence            9999999999987

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.79  E-value=1.3e-21  Score=188.35  Aligned_cols=250  Identities=18%  Similarity=0.190  Sum_probs=152.0

Q ss_pred             EeEEEecCCCCCcCCccCCCC--CCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcc--cchhhhccccCcEEEee
Q 047959          136 LRVLNLGSAVLDQYPPGLENL--FYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDH--SPEDIWMMQKLMHLNFG  211 (478)
Q Consensus       136 L~~L~L~~~~l~~lp~~~~~l--~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~  211 (478)
                      ++.++++++.+.  +..+..+  ++++.|+++++.+...+..+..+++|++|++++|.+..  +|..+..+++|++|+++
T Consensus        49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~  126 (336)
T 2ast_B           49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE  126 (336)
T ss_dssp             SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence            456666666554  2334444  56666666666666444445566666666666665432  55556666666666665


Q ss_pred             CCCCCCCCCCCCCCCCCCcEeCcccCC--C--CCccccCCCCCCcEEEEEecCCcchhhHHHhccCCC-CCCEEEEEecC
Q 047959          212 SITLPAPPKNNSSPLKNLIFISALHPS--S--CTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLH-KLECLKLVNEG  286 (478)
Q Consensus       212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~--~--~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~-~L~~L~l~~~~  286 (478)
                      +|......+..+..+++|++|++.+|.  .  ..+..+.++++|++|++++|.......++..+..++ +|++|+++++.
T Consensus       127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence            554444444455556666666666662  1  234446677788888888772133334566677778 88888888742


Q ss_pred             -cc--cccCccccccccCCCCceEEEEEeec-CCCCCcCcccCCCCCCeEEEeeCc-ccCceeEEeCCCCCcccceeEEe
Q 047959          287 -KM--RQLSRMILSEYKFPPSLTQLSLSNTE-LVEDPMPTLEELPHLEVLKLKQNS-YLERKLACVGCSSFPQLKILHLK  361 (478)
Q Consensus       287 -~l--~~~p~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~L~~L~L~  361 (478)
                       .+  ..+|.   .+.. +++|+.|++++|. +++..+..++.+++|++|++++|. +....+..  +..+++|+.|+++
T Consensus       207 ~~~~~~~l~~---~~~~-~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--l~~~~~L~~L~l~  280 (336)
T 2ast_B          207 KNLQKSDLST---LVRR-CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE--LGEIPTLKTLQVF  280 (336)
T ss_dssp             GGSCHHHHHH---HHHH-CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG--GGGCTTCCEEECT
T ss_pred             ccCCHHHHHH---HHhh-CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH--HhcCCCCCEEecc
Confidence             33  34565   5666 7888888888887 555666677788888888888774 33322211  5567888888888


Q ss_pred             cCCCCCceeeCCCcc-cccceeEEecCCCCCCCcccc
Q 047959          362 SMLWLEEWTMGAGAM-PKLESLILNPCAYLRKLPEEQ  397 (478)
Q Consensus       362 ~~~~l~~l~~~~~~~-~~L~~L~l~~c~~l~~lp~~l  397 (478)
                      +|  ++.-  ....+ .+|+.|++++|...+..|..+
T Consensus       281 ~~--i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          281 GI--VPDG--TLQLLKEALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             TS--SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred             Cc--cCHH--HHHHHHhhCcceEEecccCccccCCcc
Confidence            76  2211  11223 346777777666555555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=7.7e-21  Score=191.92  Aligned_cols=231  Identities=13%  Similarity=0.050  Sum_probs=127.2

Q ss_pred             CCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeC
Q 047959          155 NLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFIS  233 (478)
Q Consensus       155 ~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  233 (478)
                      .+++|++|++++|.+..++ ..++.+++|++|++++|.+...++ +..+++|++|++++|.+.. +|    ..++|++|+
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~  105 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL----VGPSIETLH  105 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CC----CCCCcCEEE
Confidence            3448999999999888654 578888999999999998876665 7888889999987775432 22    236777777


Q ss_pred             cccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc-cCccccccc-cCCCCceEEEE
Q 047959          234 ALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ-LSRMILSEY-KFPPSLTQLSL  310 (478)
Q Consensus       234 l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~-~p~~~~~~~-~~~~~L~~L~l  310 (478)
                      +.+|. ...+.  ..+++|+.|++++|  ...+..+..+..+++|+.|++++ +.++. .|.   .+. . +++|+.|++
T Consensus       106 L~~N~l~~~~~--~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~---~l~~~-l~~L~~L~L  176 (487)
T 3oja_A          106 AANNNISRVSC--SRGQGKKNIYLANN--KITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFA---ELAAS-SDTLEHLNL  176 (487)
T ss_dssp             CCSSCCCCEEE--CCCSSCEEEECCSS--CCCSGGGBCGGGGSSEEEEECTT-SCCCEEEGG---GGGGG-TTTCCEEEC
T ss_pred             CcCCcCCCCCc--cccCCCCEEECCCC--CCCCCCchhhcCCCCCCEEECCC-CCCCCcChH---HHhhh-CCcccEEec
Confidence            77665 22221  23455666666655  23333333444555555555554 44432 222   332 3 455555555


Q ss_pred             EeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCCC
Q 047959          311 SNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYL  390 (478)
Q Consensus       311 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l  390 (478)
                      ++|.+++.  +....+++|+.|+|++|.+++..+.   +..+++|+.|++++ +.++.+|.....+++|+.|++++|+..
T Consensus       177 s~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          177 QYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE---FQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             TTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG---GGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             CCCccccc--cccccCCCCCEEECCCCCCCCCCHh---HcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCCCc
Confidence            55554332  2223355555555555554432211   34445555555555 244444444445555555555555433


Q ss_pred             -CCCccccCCCCCCCEE
Q 047959          391 -RKLPEEQWCIKSLCKL  406 (478)
Q Consensus       391 -~~lp~~l~~l~~L~~L  406 (478)
                       ..+|..+..+++|+.+
T Consensus       251 c~~~~~~~~~l~~L~~l  267 (487)
T 3oja_A          251 CGTLRDFFSKNQRVQTV  267 (487)
T ss_dssp             HHHHHHHHTTCHHHHHH
T ss_pred             CcchHHHHHhCCCCcEE
Confidence             2333333434433333

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.78  E-value=3.9e-19  Score=166.08  Aligned_cols=216  Identities=19%  Similarity=0.180  Sum_probs=146.3

Q ss_pred             EEEecCCCCCcCCccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEeeCCCC
Q 047959          138 VLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFGSITL  215 (478)
Q Consensus       138 ~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~  215 (478)
                      ..+-.+..++.+|..+.  ++|++|++++|.++.++. .+.++++|++|++++|.+..++. .+..+++|++|++++|.+
T Consensus        11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            34555566778887664  489999999999997775 78889999999999998888865 678899999999988876


Q ss_pred             CCCCCCCCCCCCCCcEeCcccCC-CCC-ccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc--c
Q 047959          216 PAPPKNNSSPLKNLIFISALHPS-SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ--L  291 (478)
Q Consensus       216 ~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~--~  291 (478)
                      ....+..+..+++|++|++.++. ... +..++.+++|++|+++++                           .++.  +
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n---------------------------~l~~~~l  141 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN---------------------------LIQSFKL  141 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS---------------------------CCCCCCC
T ss_pred             CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC---------------------------ccceecC
Confidence            66556667778888888777765 222 223455555555555544                           3332  4


Q ss_pred             CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCC----eEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCC
Q 047959          292 SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLE----VLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLE  367 (478)
Q Consensus       292 p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~  367 (478)
                      |.   .+.. +++|+.|++++|.+++.....+..+++|+    .|++++|.+......   .....+|+.|+++++ .++
T Consensus       142 ~~---~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~---~~~~~~L~~L~L~~n-~l~  213 (276)
T 2z62_A          142 PE---YFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG---AFKEIRLKELALDTN-QLK  213 (276)
T ss_dssp             CG---GGGG-CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTT---SSCSCCEEEEECCSS-CCS
T ss_pred             ch---hhcc-CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcc---ccCCCcccEEECCCC-cee
Confidence            55   5666 67777777777766554444555444444    677776666533221   223347888888874 566


Q ss_pred             ceeeC-CCcccccceeEEecCCCC
Q 047959          368 EWTMG-AGAMPKLESLILNPCAYL  390 (478)
Q Consensus       368 ~l~~~-~~~~~~L~~L~l~~c~~l  390 (478)
                      .++.. ...+++|+.|++++|+..
T Consensus       214 ~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          214 SVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             ecCHhHhcccccccEEEccCCccc
Confidence            66654 366888888888887643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.78  E-value=1.3e-18  Score=163.54  Aligned_cols=199  Identities=20%  Similarity=0.139  Sum_probs=155.5

Q ss_pred             CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEE
Q 047959          131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLN  209 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  209 (478)
                      .+++.++.++++++.++.+|..+.  +++++|++++|.+..+ |..+..+++|++|++++|.+..++.. +.+++|++|+
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~   83 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD   83 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred             cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence            567788999999999998887764  6899999999999865 46788999999999999999888764 7889999999


Q ss_pred             eeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCC-ccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCc
Q 047959          210 FGSITLPAPPKNNSSPLKNLIFISALHPS-SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGK  287 (478)
Q Consensus       210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~  287 (478)
                      +++|.+. .+|..+..+++|+.|++.++. ... +..+.++++|+.|++++|  ......+..+..+++|+.|++++ +.
T Consensus        84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~-N~  159 (290)
T 1p9a_G           84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLAN-NN  159 (290)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS--CCCCCCTTTTTTCTTCCEEECTT-SC
T ss_pred             CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC--CCCccChhhcccccCCCEEECCC-Cc
Confidence            9777665 677778888999999988887 444 356788888888888887  33333344566788888888887 77


Q ss_pred             ccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCccc
Q 047959          288 MRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYL  340 (478)
Q Consensus       288 l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  340 (478)
                      ++.+|..  .+.. +++|+.|++++|.++ ..+..+...++|+.|+|++|.+.
T Consensus       160 l~~l~~~--~~~~-l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          160 LTELPAG--LLNG-LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CSCCCTT--TTTT-CTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCccCHH--HhcC-cCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            7777761  2355 788888888888875 45556666778888888877764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.78  E-value=5.2e-19  Score=161.55  Aligned_cols=184  Identities=18%  Similarity=0.277  Sum_probs=91.1

Q ss_pred             CCcCCccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCc-Ccccch-hhhccccCcEEEeeC-CCCCCCCCC
Q 047959          146 LDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSY-IDHSPE-DIWMMQKLMHLNFGS-ITLPAPPKN  221 (478)
Q Consensus       146 l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~-l~~lp~-~i~~l~~L~~L~l~~-~~~~~~~~~  221 (478)
                      ++.+|. +..  +|++|++++|.++.+|. .+..+++|++|++++|. +..++. .+..+++|++|++++ |.+....+.
T Consensus        23 l~~ip~-~~~--~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           23 IQRIPS-LPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             CSSCCC-CCT--TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             ccccCC-CCC--cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            555555 332  66677777776666654 46666677777777664 666654 455666677776655 444332233


Q ss_pred             CCCCCCCCcEeCcccCC-CCCccccCCCCCCc---EEEEEecCCcchhhH-HHhccCCCCCC-EEEEEecCcccccCccc
Q 047959          222 NSSPLKNLIFISALHPS-SCTPDILGRLPNVQ---TLRISGDLSYYHSGV-SKSLCQLHKLE-CLKLVNEGKMRQLSRMI  295 (478)
Q Consensus       222 ~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~---~L~l~~~~~~~~~~l-~~~l~~~~~L~-~L~l~~~~~l~~~p~~~  295 (478)
                      .+..+++|++|++.++. ...+. +..+++|+   .|+++++.  ....+ +..+..+++|+ .|++++ +.++.+|.  
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~--~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~--  173 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNP--YMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQG--  173 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCT--TCCEECTTTTTTTBSSEEEEECCS-CCCCEECT--
T ss_pred             HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCc--chhhcCcccccchhcceeEEEcCC-CCCcccCH--
Confidence            34445555555555444 22222 44444444   55555441  11111 12234444555 555544 44444444  


Q ss_pred             cccccCCCCceEEEEEeec-CCCCCcCcccCC-CCCCeEEEeeCccc
Q 047959          296 LSEYKFPPSLTQLSLSNTE-LVEDPMPTLEEL-PHLEVLKLKQNSYL  340 (478)
Q Consensus       296 ~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l-~~L~~L~L~~~~~~  340 (478)
                       .... .++|+.|++++|+ ++......+..+ ++|+.|++++|.+.
T Consensus       174 -~~~~-~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          174 -YAFN-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             -TTTT-TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             -hhcC-CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence             3333 3445555555552 433333344444 44444444444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.78  E-value=9e-19  Score=163.20  Aligned_cols=208  Identities=19%  Similarity=0.208  Sum_probs=121.4

Q ss_pred             CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEE
Q 047959          131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLN  209 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~  209 (478)
                      ..++.|+.|+++++.++.++. +..+++|++|++++|.+..++ .+..+++|++|++++|.+..+|.. +..+++|++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            455667777777777665553 666777777777777776654 566777777777777777666543 46677777777


Q ss_pred             eeCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959          210 FGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR  289 (478)
Q Consensus       210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~  289 (478)
                      +++|.+....+..+..+++|++|++.+|.                        .....+..+..+++|+.|++++ +.++
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------------------------l~~~~~~~~~~l~~L~~L~l~~-n~l~  170 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQ------------------------LQSLPKGVFDKLTNLTELDLSY-NQLQ  170 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSC------------------------CCCCCTTTTTTCTTCCEEECCS-SCCC
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCc------------------------cCccCHHHhccCccCCEEECCC-CCcC
Confidence            76665544333334555555555555443                        1111122234455555555554 4444


Q ss_pred             ccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCce
Q 047959          290 QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEW  369 (478)
Q Consensus       290 ~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l  369 (478)
                      .+|..  .+.. +++|+.|++++|.+++..+..++.+++|+.|++++|.+.         +.+++|+.|.++.+.....+
T Consensus       171 ~~~~~--~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~l~~~~n~~~g~i  238 (272)
T 3rfs_A          171 SLPEG--VFDK-LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWINKHSGVV  238 (272)
T ss_dssp             CCCTT--TTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC---------CCTTTTHHHHHHHHHTGGGB
T ss_pred             ccCHH--HhcC-CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc---------ccCcHHHHHHHHHHhCCCcc
Confidence            44430  2355 667777777777766655555666777777777766542         33556666666654333355


Q ss_pred             eeCCCccc
Q 047959          370 TMGAGAMP  377 (478)
Q Consensus       370 ~~~~~~~~  377 (478)
                      |...+.++
T Consensus       239 p~~~~~~~  246 (272)
T 3rfs_A          239 RNSAGSVA  246 (272)
T ss_dssp             BCTTSCBC
T ss_pred             cCcccccC
Confidence            55444433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.78  E-value=1.4e-22  Score=203.99  Aligned_cols=131  Identities=17%  Similarity=0.128  Sum_probs=64.0

Q ss_pred             ccCCCCeEeEEEecCCCCC-----cCCccCCCCCCCceEeecCCCCCc-cchhh-hCCC----CCcEEeCCCCcCc----
Q 047959          129 FCKKFKHLRVLNLGSAVLD-----QYPPGLENLFYLKYLKLNIPSLKC-LPSLL-CTLL----NLQTLEMPSSYID----  193 (478)
Q Consensus       129 ~~~~~~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~i~~-lp~~~-~~l~----~L~~L~l~~~~l~----  193 (478)
                      ++..+++|++|++++|.++     .++..+..+++|++|++++|.+.. .+..+ ..+.    +|++|++++|.+.    
T Consensus        23 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~  102 (461)
T 1z7x_W           23 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  102 (461)
T ss_dssp             HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             HHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence            3455556666666666654     334445555666666666665542 12222 2233    4666666666554    


Q ss_pred             -ccchhhhccccCcEEEeeCCCCCCCCCCC-----CCCCCCCcEeCcccCC-C-----CCccccCCCCCCcEEEEEec
Q 047959          194 -HSPEDIWMMQKLMHLNFGSITLPAPPKNN-----SSPLKNLIFISALHPS-S-----CTPDILGRLPNVQTLRISGD  259 (478)
Q Consensus       194 -~lp~~i~~l~~L~~L~l~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~-~-----~~~~~l~~l~~L~~L~l~~~  259 (478)
                       .+|..+..+++|++|++++|.+....+..     ....++|++|++.+|. .     ..+..+..+++|++|++++|
T Consensus       103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  180 (461)
T 1z7x_W          103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN  180 (461)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence             33555556666666666555432211111     1123455555555554 1     12333444555555555555

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.78  E-value=4.8e-19  Score=165.05  Aligned_cols=129  Identities=24%  Similarity=0.332  Sum_probs=102.6

Q ss_pred             cCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchh-hhCCCCCcEEeCCCCcCcccchh-hhccccCcE
Q 047959          130 CKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMH  207 (478)
Q Consensus       130 ~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~  207 (478)
                      +..+++|++|++++|.++.++ .+..+++|++|++++|.+..+|.. ++.+++|++|++++|.+..+|.. +..+++|++
T Consensus        59 l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  137 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY  137 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence            477899999999999998765 689999999999999999977755 68999999999999999888765 689999999


Q ss_pred             EEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCC-ccccCCCCCCcEEEEEec
Q 047959          208 LNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCT-PDILGRLPNVQTLRISGD  259 (478)
Q Consensus       208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~  259 (478)
                      |++++|.+....+..+..+++|++|++.+|. ... +..++.+++|+.|++++|
T Consensus       138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence            9998887765555556778888888877776 222 223455555555555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.78  E-value=1.8e-18  Score=161.04  Aligned_cols=175  Identities=23%  Similarity=0.267  Sum_probs=113.2

Q ss_pred             CCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCccc
Q 047959          158 YLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALH  236 (478)
Q Consensus       158 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  236 (478)
                      +.+.++++++.++.+|..+.  .+|++|++++|.+..+|. .+.++++|++|++++|.+....+..+..+++|++|++.+
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            67899999999999987664  689999999999988875 688899999999987766543334457788888888887


Q ss_pred             CC-CCC-ccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeec
Q 047959          237 PS-SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTE  314 (478)
Q Consensus       237 ~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~  314 (478)
                      +. ... +..+..+++|+.|+++++  ......+..+..+++|+.|++++ +.++.+|..  .+.. +++|+.|++++|.
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~--~~~~-l~~L~~L~L~~n~  168 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRN--QLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKG--VFDK-LTSLKELRLYNNQ  168 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT--TTTT-CTTCCEEECCSSC
T ss_pred             CcCCcCCHhHcccccCCCEEECCCC--ccCeeCHHHhCcCcCCCEEECCC-CcCCccCHh--HccC-CcccceeEecCCc
Confidence            76 333 234566677777777666  22222233345555566666555 445544431  2344 5555555555555


Q ss_pred             CCCCCcCcccCCCCCCeEEEeeCccc
Q 047959          315 LVEDPMPTLEELPHLEVLKLKQNSYL  340 (478)
Q Consensus       315 ~~~~~~~~l~~l~~L~~L~L~~~~~~  340 (478)
                      ++......+..+++|++|++++|.+.
T Consensus       169 l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          169 LKRVPEGAFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcEeChhHhccCCCcCEEECCCCcCC
Confidence            54444444555555555555555443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.77  E-value=1.1e-19  Score=188.55  Aligned_cols=277  Identities=12%  Similarity=0.062  Sum_probs=147.4

Q ss_pred             CCCCeEeEEEecCCCCCc-----CCccCCCCCCCceEeecCCCCC-----ccchhhhCCCCCcEEeCCCCcCcccchhhh
Q 047959          131 KKFKHLRVLNLGSAVLDQ-----YPPGLENLFYLKYLKLNIPSLK-----CLPSLLCTLLNLQTLEMPSSYIDHSPEDIW  200 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~  200 (478)
                      ..+++|++|+|++|.++.     ++.....+++|++|++++|.+.     .++..+.++++|++|++++|.+..+|..+.
T Consensus       161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~  240 (592)
T 3ogk_B          161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK  240 (592)
T ss_dssp             HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred             hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence            578889999999988652     3333456788999999988875     455566788999999999998888888888


Q ss_pred             ccccCcEEEeeCCCCC---CCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecC----------------
Q 047959          201 MMQKLMHLNFGSITLP---APPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDL----------------  260 (478)
Q Consensus       201 ~l~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~----------------  260 (478)
                      .+++|++|+++.....   ...+..+..+++|+.|.+..+. ...+..+..+++|++|++++|.                
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L  320 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL  320 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence            9999999998543222   1223344555555555554443 3334444444555555555442                


Q ss_pred             -------CcchhhHHHhccCCCCCCEEEEEe----------cCccc--ccCccccccccCCCCceEEEEEeecCCCCCcC
Q 047959          261 -------SYYHSGVSKSLCQLHKLECLKLVN----------EGKMR--QLSRMILSEYKFPPSLTQLSLSNTELVEDPMP  321 (478)
Q Consensus       261 -------~~~~~~l~~~l~~~~~L~~L~l~~----------~~~l~--~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  321 (478)
                             ......++.....+++|++|++++          |+.++  .++.   .... +++|++|++..+.+++..+.
T Consensus       321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~---l~~~-~~~L~~L~l~~~~l~~~~~~  396 (592)
T 3ogk_B          321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA---LAQG-CQELEYMAVYVSDITNESLE  396 (592)
T ss_dssp             CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH---HHHH-CTTCSEEEEEESCCCHHHHH
T ss_pred             CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH---HHhh-CccCeEEEeecCCccHHHHH
Confidence                   022223333333445555555552          33333  1221   1233 55666666655554443333


Q ss_pred             cccC-CCCCCeEEEee----CcccCce----eEEeCCCCCcccceeEEecCCC-CC--ceeeCCCcccccceeEEecCCC
Q 047959          322 TLEE-LPHLEVLKLKQ----NSYLERK----LACVGCSSFPQLKILHLKSMLW-LE--EWTMGAGAMPKLESLILNPCAY  389 (478)
Q Consensus       322 ~l~~-l~~L~~L~L~~----~~~~~~~----~~~~~~~~~~~L~~L~L~~~~~-l~--~l~~~~~~~~~L~~L~l~~c~~  389 (478)
                      .++. +++|+.|++.+    +.+++..    +... ..++++|++|++++|.+ ++  .+......+++|+.|++++|..
T Consensus       397 ~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~-~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l  475 (592)
T 3ogk_B          397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL-LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE  475 (592)
T ss_dssp             HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH-HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCS
T ss_pred             HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH-HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCC
Confidence            3433 56666666642    2333210    0000 22355555555544332 11  0000011245555555555542


Q ss_pred             CC-CCccccCCCCCCCEEEEecCc
Q 047959          390 LR-KLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       390 l~-~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      .. .++..+.++++|+.|++++|+
T Consensus       476 ~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          476 SDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             SHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             CHHHHHHHHhcCcccCeeeccCCC
Confidence            21 123334455666666666664

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.75  E-value=7.4e-18  Score=159.88  Aligned_cols=196  Identities=19%  Similarity=0.197  Sum_probs=145.3

Q ss_pred             CCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEe
Q 047959          153 LENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFI  232 (478)
Q Consensus       153 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  232 (478)
                      ...+++|++|++++|.+..+| .+..+++|++|++++|.+..++. +..+++|++|++++|.+.. ++ .+..+++|++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L  112 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTL  112 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEE
T ss_pred             HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEE
Confidence            456889999999999999887 68899999999999999999988 8999999999998876543 33 57888888888


Q ss_pred             CcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEE
Q 047959          233 SALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLS  311 (478)
Q Consensus       233 ~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~  311 (478)
                      ++.++. ...+ .+..+++|+.|++++|.  ... ++. +..+++|+.|++++ +.++.++    .+.. +++|+.|+++
T Consensus       113 ~l~~n~l~~~~-~l~~l~~L~~L~l~~n~--l~~-~~~-l~~l~~L~~L~l~~-n~l~~~~----~l~~-l~~L~~L~l~  181 (308)
T 1h6u_A          113 DLTSTQITDVT-PLAGLSNLQVLYLDLNQ--ITN-ISP-LAGLTNLQYLSIGN-AQVSDLT----PLAN-LSKLTTLKAD  181 (308)
T ss_dssp             ECTTSCCCCCG-GGTTCTTCCEEECCSSC--CCC-CGG-GGGCTTCCEEECCS-SCCCCCG----GGTT-CTTCCEEECC
T ss_pred             ECCCCCCCCch-hhcCCCCCCEEECCCCc--cCc-Ccc-ccCCCCccEEEccC-CcCCCCh----hhcC-CCCCCEEECC
Confidence            888887 3333 47888888888888873  221 121 66777888888876 6666666    3555 7788888888


Q ss_pred             eecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCcee
Q 047959          312 NTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWT  370 (478)
Q Consensus       312 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~  370 (478)
                      +|.+++..  .+..+++|++|++++|.+.+..   . +..+++|+.|+++++ .++..|
T Consensus       182 ~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~---~-l~~l~~L~~L~l~~N-~i~~~~  233 (308)
T 1h6u_A          182 DNKISDIS--PLASLPNLIEVHLKNNQISDVS---P-LANTSNLFIVTLTNQ-TITNQP  233 (308)
T ss_dssp             SSCCCCCG--GGGGCTTCCEEECTTSCCCBCG---G-GTTCTTCCEEEEEEE-EEECCC
T ss_pred             CCccCcCh--hhcCCCCCCEEEccCCccCccc---c-ccCCCCCCEEEccCC-eeecCC
Confidence            88765432  3677778888888777766543   1 566777777777774 344433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.74  E-value=6.9e-20  Score=190.20  Aligned_cols=278  Identities=14%  Similarity=0.061  Sum_probs=190.3

Q ss_pred             ccCCCCeEeEEEecCCCCC-----cCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCC--------------
Q 047959          129 FCKKFKHLRVLNLGSAVLD-----QYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPS--------------  189 (478)
Q Consensus       129 ~~~~~~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~--------------  189 (478)
                      ++..++.|+.|++++|.++     .++..+.++++|++|++++|.+..+|..+..+++|+.|+++.              
T Consensus       187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  266 (592)
T 3ogk_B          187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL  266 (592)
T ss_dssp             HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred             HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence            4467888888888888875     334445677888888888888777777777777777777753              


Q ss_pred             -------------CcCcccchhhhccccCcEEEeeCCCCCCCC-CCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcE
Q 047959          190 -------------SYIDHSPEDIWMMQKLMHLNFGSITLPAPP-KNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQT  253 (478)
Q Consensus       190 -------------~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~  253 (478)
                                   +....+|..+..+++|++|++++|...... +..+..+++|++|++..+.  ...+.....+++|++
T Consensus       267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~  346 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR  346 (592)
T ss_dssp             CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred             hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence                         333455666778889999999776633221 1235778889999887443  233334467899999


Q ss_pred             EEEEe----------cCCcchhhHHHhccCCCCCCEEEEEecCcccc-cCccccccccCCCCceEEEEEee----cCCCC
Q 047959          254 LRISG----------DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ-LSRMILSEYKFPPSLTQLSLSNT----ELVED  318 (478)
Q Consensus       254 L~l~~----------~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~-~p~~~~~~~~~~~~L~~L~l~~~----~~~~~  318 (478)
                      |++++          +.......+......+++|+.|++.. +.++. .+.   .++..+++|+.|+++++    .+++.
T Consensus       347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~l~~~~~~---~l~~~~~~L~~L~l~~~~~~n~l~~~  422 (592)
T 3ogk_B          347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-SDITNESLE---SIGTYLKNLCDFRLVLLDREERITDL  422 (592)
T ss_dssp             EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SCCCHHHHH---HHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred             EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec-CCccHHHHH---HHHhhCCCCcEEEEeecCCCccccCc
Confidence            99994          43234444555566789999999965 66652 222   33222789999999843    44432


Q ss_pred             C-----cCcccCCCCCCeEEEeeCc--ccCceeEEeCCCCCcccceeEEecCCCCC--ceeeCCCcccccceeEEecCCC
Q 047959          319 P-----MPTLEELPHLEVLKLKQNS--YLERKLACVGCSSFPQLKILHLKSMLWLE--EWTMGAGAMPKLESLILNPCAY  389 (478)
Q Consensus       319 ~-----~~~l~~l~~L~~L~L~~~~--~~~~~~~~~~~~~~~~L~~L~L~~~~~l~--~l~~~~~~~~~L~~L~l~~c~~  389 (478)
                      .     ...+..+++|+.|+++.|.  +++..+... ...+++|+.|++++|. ++  .++.....+++|+.|++++|+.
T Consensus       423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l  500 (592)
T 3ogk_B          423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCF  500 (592)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred             hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCC
Confidence            1     1225679999999998544  444433322 3458899999999864 54  3344456789999999999983


Q ss_pred             CC-CCccccCCCCCCCEEEEecCc
Q 047959          390 LR-KLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       390 l~-~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      .. .++.....+++|+.|++++|.
T Consensus       501 ~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          501 SERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             BHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             cHHHHHHHHHhcCccCeeECcCCc
Confidence            21 244555679999999999998

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.74  E-value=6.4e-18  Score=163.38  Aligned_cols=240  Identities=15%  Similarity=0.114  Sum_probs=124.6

Q ss_pred             eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcC-cccch-hhhccccCcEE-EeeC
Q 047959          137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYI-DHSPE-DIWMMQKLMHL-NFGS  212 (478)
Q Consensus       137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l-~~lp~-~i~~l~~L~~L-~l~~  212 (478)
                      ++++-+++.++++|..+.  +++++|++++|.|+.+|. .+.++++|++|++++|.+ +.+|. .+.++++|+.+ .++.
T Consensus        12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            345566666666666552  466677777777766664 356666677777766654 33443 23455555543 3333


Q ss_pred             CCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccC
Q 047959          213 ITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLS  292 (478)
Q Consensus       213 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p  292 (478)
                      |.+....|..+..+++|++|++.++.                        .....+.......++..+++.+++.+..+|
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~------------------------l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~  145 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTG------------------------IKHLPDVHKIHSLQKVLLDIQDNINIHTIE  145 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEEC------------------------CSSCCCCTTCCBSSCEEEEEESCTTCCEEC
T ss_pred             CcccccCchhhhhccccccccccccc------------------------cccCCchhhcccchhhhhhhcccccccccc
Confidence            33333333344445555555444443                        111111122233344455554444555444


Q ss_pred             ccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeC
Q 047959          293 RMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMG  372 (478)
Q Consensus       293 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~  372 (478)
                      ..  .+......++.|++++|.++.. +.......+|+.|++.+++.....+... +..+++|++|++++ +.++.+|. 
T Consensus       146 ~~--~f~~~~~~l~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~-f~~l~~L~~LdLs~-N~l~~lp~-  219 (350)
T 4ay9_X          146 RN--SFVGLSFESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISR-TRIHSLPS-  219 (350)
T ss_dssp             TT--SSTTSBSSCEEEECCSSCCCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTT-TTTEECCSEEECTT-SCCCCCCS-
T ss_pred             cc--chhhcchhhhhhccccccccCC-ChhhccccchhHHhhccCCcccCCCHHH-hccCcccchhhcCC-CCcCccCh-
Confidence            31  2222123466666666665432 2222334556666665433333222222 45666677777766 35666654 


Q ss_pred             CCcccccceeEEecCCCCCCCccccCCCCCCCEEEEec
Q 047959          373 AGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHW  410 (478)
Q Consensus       373 ~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  410 (478)
                       +.+.+|+.|.+.+|..++.+|. +..+++|+.+++..
T Consensus       220 -~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          220 -YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             -SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred             -hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence             3466677777666766777764 66677777777653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.73  E-value=1.1e-17  Score=157.05  Aligned_cols=176  Identities=19%  Similarity=0.167  Sum_probs=152.3

Q ss_pred             CeEeEEEecCCCCCcC-CccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeC
Q 047959          134 KHLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGS  212 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~  212 (478)
                      +.+++|++++|.++.+ +..+..+++|++|++++|.++.++.. +.+++|++|++++|.+..+|..+..+++|++|++++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~  109 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF  109 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCC
Confidence            6799999999999855 45699999999999999999988765 789999999999999999999899999999999988


Q ss_pred             CCCCCCCCCCCCCCCCCcEeCcccCC-CCC-ccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc
Q 047959          213 ITLPAPPKNNSSPLKNLIFISALHPS-SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ  290 (478)
Q Consensus       213 ~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~  290 (478)
                      |.+....+..+..+++|++|++.++. ... +..+..+++|+.|++++|.  .....+..+..+++|+.|++++ +.++.
T Consensus       110 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~l~~~~~~~l~~L~~L~L~~-N~l~~  186 (290)
T 1p9a_G          110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN--LTELPAGLLNGLENLDTLLLQE-NSLYT  186 (290)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CSCCCTTTTTTCTTCCEEECCS-SCCCC
T ss_pred             CcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc--CCccCHHHhcCcCCCCEEECCC-CcCCc
Confidence            88776666779999999999999998 444 4457899999999999983  3333334567899999999998 89999


Q ss_pred             cCccccccccCCCCceEEEEEeecCCC
Q 047959          291 LSRMILSEYKFPPSLTQLSLSNTELVE  317 (478)
Q Consensus       291 ~p~~~~~~~~~~~~L~~L~l~~~~~~~  317 (478)
                      +|.   .+.. .++|+.|++++|++..
T Consensus       187 ip~---~~~~-~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          187 IPK---GFFG-SHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCT---TTTT-TCCCSEEECCSCCBCC
T ss_pred             cCh---hhcc-cccCCeEEeCCCCccC
Confidence            999   8888 8999999999998754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.73  E-value=2.7e-18  Score=163.18  Aligned_cols=196  Identities=20%  Similarity=0.192  Sum_probs=115.3

Q ss_pred             CCCceEeecCCCCC-ccchhh--hCCCCCcEEeCCCCcCccc-c----hhhhccccCcEEEeeCCCCCCCCCCCCCCCCC
Q 047959          157 FYLKYLKLNIPSLK-CLPSLL--CTLLNLQTLEMPSSYIDHS-P----EDIWMMQKLMHLNFGSITLPAPPKNNSSPLKN  228 (478)
Q Consensus       157 ~~L~~L~l~~~~i~-~lp~~~--~~l~~L~~L~l~~~~l~~l-p----~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  228 (478)
                      ++|++|++++|.+. ..|..+  ..+++|++|++++|.+... +    ..+..+++|++|++++|.+....+..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            44666666666655 444444  5566666666666655431 1    22345666666666666655555555666666


Q ss_pred             CcEeCcccCC-CC---C--ccccCCCCCCcEEEEEecCCcchhhHHH-hccCCCCCCEEEEEecCccccc-Ccccccccc
Q 047959          229 LIFISALHPS-SC---T--PDILGRLPNVQTLRISGDLSYYHSGVSK-SLCQLHKLECLKLVNEGKMRQL-SRMILSEYK  300 (478)
Q Consensus       229 L~~L~l~~~~-~~---~--~~~l~~l~~L~~L~l~~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~~l~~~-p~~~~~~~~  300 (478)
                      |++|++++|. ..   .  ...++.+++|++|++++|.-......+. .+..+++|++|++++ +.++.. |.   .+..
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~p~---~~~~  246 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH-NSLRATVNP---SAPR  246 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT-SCCCCCCCS---CCSS
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC-CCCCccchh---hHHh
Confidence            6666666664 11   1  1123566777777777763111122222 245677888888876 666654 55   4444


Q ss_pred             C--CCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecC
Q 047959          301 F--PPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSM  363 (478)
Q Consensus       301 ~--~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  363 (478)
                      .  +++|++|++++|.++ ..+..+.  ++|++|+|++|.+.+...    ...+++|+.|+++++
T Consensus       247 ~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~----~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          247 CMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ----PDELPEVDNLTLDGN  304 (310)
T ss_dssp             CCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC----TTSCCCCSCEECSST
T ss_pred             ccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch----hhhCCCccEEECcCC
Confidence            1  268888888888776 3344443  688888888887765321    456788888888774

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.73  E-value=2.6e-19  Score=172.22  Aligned_cols=225  Identities=15%  Similarity=0.162  Sum_probs=172.2

Q ss_pred             CeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCC-c-cchhhhCCCCCcEEeCCCCcCc-ccchhhhccccCcEEEe
Q 047959          134 KHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLK-C-LPSLLCTLLNLQTLEMPSSYID-HSPEDIWMMQKLMHLNF  210 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~-~-lp~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l  210 (478)
                      +.++.|+++++.++..+..+..+++|++|++++|.+. . +|..+..+++|++|++++|.+. ..|..++.+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            4578899999998866666778899999999999887 3 7888889999999999999765 56777888999999999


Q ss_pred             eCC-CCCC-CCCCCCCCCCCCcEeCcccC-C-C--CCccccCCCC-CCcEEEEEecC-CcchhhHHHhccCCCCCCEEEE
Q 047959          211 GSI-TLPA-PPKNNSSPLKNLIFISALHP-S-S--CTPDILGRLP-NVQTLRISGDL-SYYHSGVSKSLCQLHKLECLKL  282 (478)
Q Consensus       211 ~~~-~~~~-~~~~~~~~l~~L~~L~l~~~-~-~--~~~~~l~~l~-~L~~L~l~~~~-~~~~~~l~~~l~~~~~L~~L~l  282 (478)
                      ++| .... .++..+..+++|++|++.+| . .  ..+..+..++ +|++|++++|. ......++..+..+++|+.|++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            777 3333 25555777889999999988 5 2  2466678899 99999999983 2333677788889999999999


Q ss_pred             EecCccc-ccCccccccccCCCCceEEEEEeec-CCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCC-cccceeE
Q 047959          283 VNEGKMR-QLSRMILSEYKFPPSLTQLSLSNTE-LVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSF-PQLKILH  359 (478)
Q Consensus       283 ~~~~~l~-~~p~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~-~~L~~L~  359 (478)
                      ++|..++ ..+.   .+.. +++|+.|++++|. +.......++.+++|+.|++++| +....     +..+ .+|+.|+
T Consensus       230 ~~~~~l~~~~~~---~l~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~-----~~~l~~~l~~L~  299 (336)
T 2ast_B          230 SDSVMLKNDCFQ---EFFQ-LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGT-----LQLLKEALPHLQ  299 (336)
T ss_dssp             TTCTTCCGGGGG---GGGG-CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTC-----HHHHHHHSTTSE
T ss_pred             CCCCcCCHHHHH---HHhC-CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHH-----HHHHHhhCcceE
Confidence            9855354 4555   7788 8999999999995 43334446888999999999988 44433     2233 3577888


Q ss_pred             EecCCCCCce
Q 047959          360 LKSMLWLEEW  369 (478)
Q Consensus       360 L~~~~~l~~l  369 (478)
                      +++ +.++..
T Consensus       300 l~~-n~l~~~  308 (336)
T 2ast_B          300 INC-SHFTTI  308 (336)
T ss_dssp             ESC-CCSCCT
T ss_pred             Eec-ccCccc
Confidence            876 456533

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.73  E-value=1.9e-20  Score=183.84  Aligned_cols=85  Identities=12%  Similarity=0.060  Sum_probs=56.1

Q ss_pred             CCCCeEeEEEecCCCCC-----cCCccCCCCCCCceEeecCCCCC----ccchhh-------hCCCCCcEEeCCCCcCcc
Q 047959          131 KKFKHLRVLNLGSAVLD-----QYPPGLENLFYLKYLKLNIPSLK----CLPSLL-------CTLLNLQTLEMPSSYIDH  194 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~i~----~lp~~~-------~~l~~L~~L~l~~~~l~~  194 (478)
                      ..+++|+.|+|++|.++     .++..+..+++|++|++++|.+.    .+|..+       ..+++|++|++++|.+..
T Consensus        29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  108 (386)
T 2ca6_A           29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  108 (386)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence            55667777777777765     23444667777777777776443    334333       567777777777776655


Q ss_pred             -----cchhhhccccCcEEEeeCCCC
Q 047959          195 -----SPEDIWMMQKLMHLNFGSITL  215 (478)
Q Consensus       195 -----lp~~i~~l~~L~~L~l~~~~~  215 (478)
                           +|..+..+++|++|++++|.+
T Consensus       109 ~~~~~l~~~l~~~~~L~~L~L~~n~l  134 (386)
T 2ca6_A          109 TAQEPLIDFLSKHTPLEHLYLHNNGL  134 (386)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             HHHHHHHHHHHhCCCCCEEECcCCCC
Confidence                 566677777777777766644

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.72  E-value=2.5e-17  Score=159.18  Aligned_cols=218  Identities=14%  Similarity=0.129  Sum_probs=157.5

Q ss_pred             CeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCC-ccch-hhhCCCCCcE-EeCCCCcCcccc-hhhhccccCcEE
Q 047959          134 KHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLK-CLPS-LLCTLLNLQT-LEMPSSYIDHSP-EDIWMMQKLMHL  208 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~-~lp~-~~~~l~~L~~-L~l~~~~l~~lp-~~i~~l~~L~~L  208 (478)
                      ++++.|+|++|.++.+|.. |.++++|++|++++|.+. .+|. .+.++++|++ +.+.++++..++ ..+..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            5789999999999999875 899999999999999985 5664 4678888876 455566999985 557899999999


Q ss_pred             EeeCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHH-HhccCC-CCCCEEEEEecC
Q 047959          209 NFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVS-KSLCQL-HKLECLKLVNEG  286 (478)
Q Consensus       209 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~~-~~L~~L~l~~~~  286 (478)
                      ++++|.+....+..+....++..|++.++.                        ....++ ..+..+ ..++.|++++ +
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~------------------------~i~~l~~~~f~~~~~~l~~L~L~~-N  164 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNI------------------------NIHTIERNSFVGLSFESVILWLNK-N  164 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCT------------------------TCCEECTTSSTTSBSSCEEEECCS-S
T ss_pred             cccccccccCCchhhcccchhhhhhhcccc------------------------ccccccccchhhcchhhhhhcccc-c
Confidence            998886654433334444444455443321                        111111 122233 3577788876 7


Q ss_pred             cccccCccccccccCCCCceEEEEEee-cCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCC
Q 047959          287 KMRQLSRMILSEYKFPPSLTQLSLSNT-ELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLW  365 (478)
Q Consensus       287 ~l~~~p~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  365 (478)
                      .++.+|.   .... ..+|+.|.+.++ .++......++.+++|++|+|++|.++...     ...+.+|+.|.+.++..
T Consensus       165 ~i~~i~~---~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp-----~~~~~~L~~L~~l~~~~  235 (350)
T 4ay9_X          165 GIQEIHN---SAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP-----SYGLENLKKLRARSTYN  235 (350)
T ss_dssp             CCCEECT---TSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC-----SSSCTTCCEEECTTCTT
T ss_pred             cccCCCh---hhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC-----hhhhccchHhhhccCCC
Confidence            7888887   6666 678888888764 554444456788899999999988876543     45678888888888888


Q ss_pred             CCceeeCCCcccccceeEEec
Q 047959          366 LEEWTMGAGAMPKLESLILNP  386 (478)
Q Consensus       366 l~~l~~~~~~~~~L~~L~l~~  386 (478)
                      ++.+|. ...+++|+.+++.+
T Consensus       236 l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          236 LKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             CCCCCC-TTTCCSCCEEECSC
T ss_pred             cCcCCC-chhCcChhhCcCCC
Confidence            888884 67889999998864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.72  E-value=3.6e-18  Score=155.95  Aligned_cols=215  Identities=15%  Similarity=0.163  Sum_probs=133.0

Q ss_pred             ceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEeeCCC-CCCCCCCCCCCCCCCcEeCcccC
Q 047959          160 KYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFGSIT-LPAPPKNNSSPLKNLIFISALHP  237 (478)
Q Consensus       160 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~  237 (478)
                      +.+.+....++.+|. +.  .+|++|++++|.+..+|. .+..+++|++|++++|. +....+..+..+++|++|++.++
T Consensus        14 ~~~~v~c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~   90 (239)
T 2xwt_C           14 EDFRVTCKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT   90 (239)
T ss_dssp             STTEEEECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEE
T ss_pred             CcceeEccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCC
Confidence            334444445778886 43  489999999998888876 57788899999997775 33222223444445555444431


Q ss_pred             CCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCce---EEEEEee-
Q 047959          238 SSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLT---QLSLSNT-  313 (478)
Q Consensus       238 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~---~L~l~~~-  313 (478)
                                           +  ......+..+..+++|+.|++++ +.++.+|.    +.. +++|+   .|++++| 
T Consensus        91 ---------------------n--~l~~i~~~~f~~l~~L~~L~l~~-n~l~~lp~----~~~-l~~L~~L~~L~l~~N~  141 (239)
T 2xwt_C           91 ---------------------R--NLTYIDPDALKELPLLKFLGIFN-TGLKMFPD----LTK-VYSTDIFFILEITDNP  141 (239)
T ss_dssp             ---------------------T--TCCEECTTSEECCTTCCEEEEEE-ECCCSCCC----CTT-CCBCCSEEEEEEESCT
T ss_pred             ---------------------C--CeeEcCHHHhCCCCCCCEEeCCC-CCCccccc----ccc-ccccccccEEECCCCc
Confidence                                 3  11111223445566666666665 55555552    333 45555   7777777 


Q ss_pred             cCCCCCcCcccCCCCCC-eEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeC-CCcc-cccceeEEecCCCC
Q 047959          314 ELVEDPMPTLEELPHLE-VLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAM-PKLESLILNPCAYL  390 (478)
Q Consensus       314 ~~~~~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~~-~~L~~L~l~~c~~l  390 (478)
                      .++......+..+++|+ .|++++|.+.. .+... +.. ++|+.|+++++..++.++.. +..+ ++|+.|++++|. +
T Consensus       142 ~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~-~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l  217 (239)
T 2xwt_C          142 YMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYA-FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-V  217 (239)
T ss_dssp             TCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTT-TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-C
T ss_pred             chhhcCcccccchhcceeEEEcCCCCCcc-cCHhh-cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-c
Confidence            66555555677777787 88887777652 22111 233 67888888875457766543 4566 888888888865 4


Q ss_pred             CCCccccCCCCCCCEEEEecCc
Q 047959          391 RKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       391 ~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      +.+|..  .+++|+.|++.++.
T Consensus       218 ~~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          218 TALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CCCCCT--TCTTCSEEECTTC-
T ss_pred             ccCChh--HhccCceeeccCcc
Confidence            556653  67888888887765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.72  E-value=4.6e-20  Score=181.09  Aligned_cols=252  Identities=17%  Similarity=0.116  Sum_probs=173.1

Q ss_pred             EeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCc-----cchhhhCCCCCcEEeCCCCcCc----ccchhh-------
Q 047959          136 LRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKC-----LPSLLCTLLNLQTLEMPSSYID----HSPEDI-------  199 (478)
Q Consensus       136 L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~l~----~lp~~i-------  199 (478)
                      |+...+....+..++..+..+++|++|++++|.+..     ++..+..+++|++|++++|.+.    .+|.++       
T Consensus        11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l   90 (386)
T 2ca6_A           11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL   90 (386)
T ss_dssp             CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence            333333333344677777788889999999988772     3444668889999999887554    335444       


Q ss_pred             hccccCcEEEeeCCCCCC----CCCCCCCCCCCCcEeCcccCC--C----CCccccCCC---------CCCcEEEEEecC
Q 047959          200 WMMQKLMHLNFGSITLPA----PPKNNSSPLKNLIFISALHPS--S----CTPDILGRL---------PNVQTLRISGDL  260 (478)
Q Consensus       200 ~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~--~----~~~~~l~~l---------~~L~~L~l~~~~  260 (478)
                      ..+++|++|++++|.+..    .+|..+..+++|++|++.+|.  .    .++..+..+         ++|++|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            678899999998887665    355567778899999988887  1    222334344         889999998884


Q ss_pred             C--cchhhHHHhccCCCCCCEEEEEecCccc------ccCccccccccCCCCceEEEEEeecCC----CCCcCcccCCCC
Q 047959          261 S--YYHSGVSKSLCQLHKLECLKLVNEGKMR------QLSRMILSEYKFPPSLTQLSLSNTELV----EDPMPTLEELPH  328 (478)
Q Consensus       261 ~--~~~~~l~~~l~~~~~L~~L~l~~~~~l~------~~p~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~l~~  328 (478)
                      -  .....+...+..+++|++|++++ +.++      -+|.   .+.. +++|+.|+|++|.++    ...+..+..+++
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~-n~l~~~g~~~l~~~---~l~~-~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~  245 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQ-NGIRPEGIEHLLLE---GLAY-CQELKVLDLQDNTFTHLGSSALAIALKSWPN  245 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCS-SCCCHHHHHHHHHT---TGGG-CTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcC-CCCCHhHHHHHHHH---Hhhc-CCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence            1  12222335677888999999987 5665      3444   5666 889999999998874    334556778889


Q ss_pred             CCeEEEeeCcccCceeEE--eCC--CCCcccceeEEecCCCCCc-----eeeCC-CcccccceeEEecCCCCCCC
Q 047959          329 LEVLKLKQNSYLERKLAC--VGC--SSFPQLKILHLKSMLWLEE-----WTMGA-GAMPKLESLILNPCAYLRKL  393 (478)
Q Consensus       329 L~~L~L~~~~~~~~~~~~--~~~--~~~~~L~~L~L~~~~~l~~-----l~~~~-~~~~~L~~L~l~~c~~l~~l  393 (478)
                      |+.|+|++|.+.+.....  ..+  +.+++|++|+|++| .++.     ++... ..+++|+.|++++|+.....
T Consensus       246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            999999988876542110  002  34788999999885 4554     65555 45789999999998765544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=3.4e-17  Score=153.94  Aligned_cols=171  Identities=19%  Similarity=0.207  Sum_probs=108.8

Q ss_pred             CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEe
Q 047959          131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNF  210 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l  210 (478)
                      ..+++|+.|++++|.++.++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..+|. +..+++|++|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L  119 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL  119 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred             hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence            456778888888888887764 7788888888888888887776 8888888888888888887765 788888888888


Q ss_pred             eCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959          211 GSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR  289 (478)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~  289 (478)
                      ++|.+.. + ..+..+++|+.|++.++. ... ..++                          .+++|+.|++++ +.++
T Consensus       120 ~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~--------------------------~l~~L~~L~L~~-N~l~  169 (291)
T 1h6t_A          120 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLS--------------------------RLTKLDTLSLED-NQIS  169 (291)
T ss_dssp             TTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGG--------------------------GCTTCSEEECCS-SCCC
T ss_pred             CCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhc--------------------------cCCCCCEEEccC-Cccc
Confidence            7665443 2 234555555555555554 221 3344                          444555555544 4444


Q ss_pred             ccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccC
Q 047959          290 QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLE  341 (478)
Q Consensus       290 ~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  341 (478)
                      .++    .+.. +++|+.|++++|.+++.  +.+..+++|+.|++++|.+..
T Consensus       170 ~~~----~l~~-l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          170 DIV----PLAG-LTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCG----GGTT-CTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred             cch----hhcC-CCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccC
Confidence            443    2333 55555555555554331  235555555555555555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.70  E-value=5.4e-19  Score=183.53  Aligned_cols=165  Identities=16%  Similarity=0.172  Sum_probs=105.2

Q ss_pred             CCCCeeeec---C--------ccccCCCCeEeEEEecCCCCCc-----CCccCCCCCCCceEeecCCC--CC--ccchhh
Q 047959          117 KSDHLALIH---C--------ENFCKKFKHLRVLNLGSAVLDQ-----YPPGLENLFYLKYLKLNIPS--LK--CLPSLL  176 (478)
Q Consensus       117 ~~~~lr~l~---~--------~~~~~~~~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~l~~~~--i~--~lp~~~  176 (478)
                      .+++|++|+   .        ..+...+++|++|++++|.++.     ++.....+++|++|++++|.  +.  .++..+
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~  207 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV  207 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred             hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence            467777772   1        2333578889999999888552     33334477789999998886  33  344444


Q ss_pred             hCCCCCcEEeCCCC-cCcccchhhhccccCcEEEeeCCCCC------------------------------CCCCCCCCC
Q 047959          177 CTLLNLQTLEMPSS-YIDHSPEDIWMMQKLMHLNFGSITLP------------------------------APPKNNSSP  225 (478)
Q Consensus       177 ~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~------------------------------~~~~~~~~~  225 (478)
                      ..+++|++|++++| .+..+|..+..+++|++|+++.+...                              ..++..+..
T Consensus       208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~  287 (594)
T 2p1m_B          208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV  287 (594)
T ss_dssp             HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred             HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence            56789999999988 66677777788888888876433210                              011111224


Q ss_pred             CCCCcEeCcccCC---CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEE
Q 047959          226 LKNLIFISALHPS---SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLV  283 (478)
Q Consensus       226 l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~  283 (478)
                      +++|++|++.+|.   ......+..+++|++|+++++  .....+......+++|+.|++.
T Consensus       288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~  346 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVF  346 (594)
T ss_dssp             HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEE
T ss_pred             hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEe
Confidence            5677788777775   112223567788888888876  3344444444457777777773

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.69  E-value=1.8e-16  Score=145.76  Aligned_cols=176  Identities=20%  Similarity=0.198  Sum_probs=117.3

Q ss_pred             eEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEeeC
Q 047959          135 HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFGS  212 (478)
Q Consensus       135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~  212 (478)
                      ..+.++++++.++.+|..+.  .+++.|++++|.+..++. .+.++++|++|++++|.+..++. .+..+++|++|++++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            35678888888888887765  588888888888886554 57888888888888888877754 367888888888877


Q ss_pred             CCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc
Q 047959          213 ITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL  291 (478)
Q Consensus       213 ~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~  291 (478)
                      |.+....+..+..+++|++|++.++. ...+.                         ..+..+++|+.|++++ +.++.+
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------------------~~~~~l~~L~~L~Ls~-N~l~~~  146 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS-------------------------GVFDRLTKLKELRLNT-NQLQSI  146 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------------------TTTTTCTTCCEEECCS-SCCCCC
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcCh-------------------------hHhccCCcccEEECcC-CcCCcc
Confidence            76665444556666666666666655 22222                         2233445555555554 455545


Q ss_pred             CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccC
Q 047959          292 SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLE  341 (478)
Q Consensus       292 p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  341 (478)
                      |..  .+.. +++|+.|++++|.+.......+..+++|+.|++++|.+..
T Consensus       147 ~~~--~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          147 PAG--AFDK-LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CTT--TTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CHH--HcCc-CcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            431  3455 6677777777776665555566667777777777666644

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.69  E-value=1.6e-16  Score=146.01  Aligned_cols=176  Identities=18%  Similarity=0.156  Sum_probs=130.2

Q ss_pred             CCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcc
Q 047959          157 FYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISAL  235 (478)
Q Consensus       157 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  235 (478)
                      ...+.++++++.++.+|..+.  .+|++|++++|.+..++. .+.++++|++|++++|.+....+..+..+++|++|++.
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            356788888888888887665  588888888888877754 57788888888887776665555556666666666666


Q ss_pred             cCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecC
Q 047959          236 HPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTEL  315 (478)
Q Consensus       236 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~  315 (478)
                      ++.                        .....+..+..+++|+.|++++ +.++.+|..  .+.. +++|+.|++++|.+
T Consensus        92 ~n~------------------------l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~--~~~~-l~~L~~L~Ls~N~l  143 (251)
T 3m19_A           92 NNQ------------------------LASLPLGVFDHLTQLDKLYLGG-NQLKSLPSG--VFDR-LTKLKELRLNTNQL  143 (251)
T ss_dssp             TSC------------------------CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT--TTTT-CTTCCEEECCSSCC
T ss_pred             CCc------------------------ccccChhHhcccCCCCEEEcCC-CcCCCcChh--Hhcc-CCcccEEECcCCcC
Confidence            554                        1111223345667777777776 677777751  3567 89999999999999


Q ss_pred             CCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCC
Q 047959          316 VEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSML  364 (478)
Q Consensus       316 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  364 (478)
                      ++.....++.+++|++|+|++|.+.......  +..+++|+.|++++++
T Consensus       144 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA--FDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSCC
T ss_pred             CccCHHHcCcCcCCCEEECCCCcCCccCHHH--HhCCCCCCEEEeeCCc
Confidence            8776668999999999999999987654322  6788999999999853

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.69  E-value=2.4e-17  Score=156.62  Aligned_cols=102  Identities=13%  Similarity=0.125  Sum_probs=49.0

Q ss_pred             CCceEeecCCCCC--ccch--hhhCCCCCcEEeCCCCcCc-ccchhh--hccccCcEEEeeCCCCCCCCC----CCCCCC
Q 047959          158 YLKYLKLNIPSLK--CLPS--LLCTLLNLQTLEMPSSYID-HSPEDI--WMMQKLMHLNFGSITLPAPPK----NNSSPL  226 (478)
Q Consensus       158 ~L~~L~l~~~~i~--~lp~--~~~~l~~L~~L~l~~~~l~-~lp~~i--~~l~~L~~L~l~~~~~~~~~~----~~~~~l  226 (478)
                      .++.|.+.++.+.  .+..  ....+.+|++|++++|.+. ..|..+  ..+++|++|++++|.+....+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            3555666655544  1111  1122345666666666543 334444  556666666666555443322    112344


Q ss_pred             CCCcEeCcccCC--CCCccccCCCCCCcEEEEEec
Q 047959          227 KNLIFISALHPS--SCTPDILGRLPNVQTLRISGD  259 (478)
Q Consensus       227 ~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~  259 (478)
                      ++|++|++.++.  ...+..++.+++|++|++++|
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  179 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDN  179 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCC
Confidence            555555555554  222334445555555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.68  E-value=1e-18  Score=169.92  Aligned_cols=38  Identities=21%  Similarity=0.104  Sum_probs=16.5

Q ss_pred             CCeEeEEEecCCCCCcCC-----ccCCCCC-CCceEeecCCCCC
Q 047959          133 FKHLRVLNLGSAVLDQYP-----PGLENLF-YLKYLKLNIPSLK  170 (478)
Q Consensus       133 ~~~L~~L~L~~~~l~~lp-----~~~~~l~-~L~~L~l~~~~i~  170 (478)
                      .++|++|++++|.++..+     ..+..++ +|++|++++|.+.
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~   64 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG   64 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC
Confidence            333444444444444332     2233444 4444444444444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.67  E-value=9.6e-17  Score=165.28  Aligned_cols=176  Identities=20%  Similarity=0.199  Sum_probs=117.5

Q ss_pred             CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEe
Q 047959          131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNF  210 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l  210 (478)
                      ..++.|+.|++++|.+..++. +..+++|+.|+|++|.+..+|. +..+++|+.|+|++|.+..+| .+..+++|++|++
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL  116 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred             hcCCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence            345667777888777776663 7777788888888887777665 777778888888888777766 4777778888888


Q ss_pred             eCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959          211 GSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR  289 (478)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~  289 (478)
                      ++|.+.. + ..+..+++|+.|++.+|. ... ..+..+++|+.|++++|.  ..+..+  +..+++|+.|++++ +.++
T Consensus       117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~Ls~-N~i~  188 (605)
T 1m9s_A          117 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ--ISDIVP--LAGLTKLQNLYLSK-NHIS  188 (605)
T ss_dssp             TTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC--CCCCGG--GTTCTTCCEEECCS-SCCC
T ss_pred             cCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc--CCCchh--hccCCCCCEEECcC-CCCC
Confidence            6665543 2 346667777777777766 322 556677777777777662  222222  56667777777776 5666


Q ss_pred             ccCccccccccCCCCceEEEEEeecCCCCCcCc
Q 047959          290 QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPT  322 (478)
Q Consensus       290 ~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  322 (478)
                      .+|    .+.. +++|+.|+|++|.+.......
T Consensus       189 ~l~----~l~~-l~~L~~L~L~~N~l~~~p~~~  216 (605)
T 1m9s_A          189 DLR----ALAG-LKNLDVLELFSQECLNKPINH  216 (605)
T ss_dssp             BCG----GGTT-CTTCSEEECCSEEEECCCCCC
T ss_pred             CCh----HHcc-CCCCCEEEccCCcCcCCcccc
Confidence            655    4555 677777777777665544333

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.66  E-value=2.3e-16  Score=148.18  Aligned_cols=170  Identities=19%  Similarity=0.221  Sum_probs=123.2

Q ss_pred             CCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEe
Q 047959          153 LENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFI  232 (478)
Q Consensus       153 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  232 (478)
                      +..+++|++|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+.. ++            
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~------------  106 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LS------------  106 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GG------------
T ss_pred             hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Ch------------
Confidence            346677888888888777775 47777888888888887777766 7777788888876664332 11            


Q ss_pred             CcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEe
Q 047959          233 SALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSN  312 (478)
Q Consensus       233 ~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~  312 (478)
                                 .+..+++|+.|++++|.  ... + ..+..+++|+.|++++ +.++.++    .+.. +++|+.|++++
T Consensus       107 -----------~l~~l~~L~~L~L~~n~--i~~-~-~~l~~l~~L~~L~l~~-n~l~~~~----~l~~-l~~L~~L~L~~  165 (291)
T 1h6t_A          107 -----------SLKDLKKLKSLSLEHNG--ISD-I-NGLVHLPQLESLYLGN-NKITDIT----VLSR-LTKLDTLSLED  165 (291)
T ss_dssp             -----------GGTTCTTCCEEECTTSC--CCC-C-GGGGGCTTCCEEECCS-SCCCCCG----GGGG-CTTCSEEECCS
T ss_pred             -----------hhccCCCCCEEECCCCc--CCC-C-hhhcCCCCCCEEEccC-CcCCcch----hhcc-CCCCCEEEccC
Confidence                       24455555555555552  111 1 3456777888888886 6777674    6777 99999999999


Q ss_pred             ecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCC
Q 047959          313 TELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSML  364 (478)
Q Consensus       313 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  364 (478)
                      |.+.+..+  +..+++|+.|++++|.+.+..   . +..+++|+.|++++++
T Consensus       166 N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~---~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          166 NQISDIVP--LAGLTKLQNLYLSKNHISDLR---A-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCCBCG---G-GTTCTTCSEEEEEEEE
T ss_pred             Cccccchh--hcCCCccCEEECCCCcCCCCh---h-hccCCCCCEEECcCCc
Confidence            99866433  899999999999999887642   2 6789999999999853

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.66  E-value=1.2e-18  Score=169.41  Aligned_cols=223  Identities=13%  Similarity=0.115  Sum_probs=126.7

Q ss_pred             EEEecCCCCC-cCCccCCCCCCCceEeecCCCCCccc-----hhhhCCC-CCcEEeCCCCcCccc-chhhhcc-----cc
Q 047959          138 VLNLGSAVLD-QYPPGLENLFYLKYLKLNIPSLKCLP-----SLLCTLL-NLQTLEMPSSYIDHS-PEDIWMM-----QK  204 (478)
Q Consensus       138 ~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~i~~lp-----~~~~~l~-~L~~L~l~~~~l~~l-p~~i~~l-----~~  204 (478)
                      .++++++.++ .+|..+....+|++|++++|.+...+     ..+..++ +|++|++++|.+... +..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            3678888887 45555556667999999999988665     5677888 899999999988665 4556554     88


Q ss_pred             CcEEEeeCCCCCCCCCCC----CCCC-CCCcEeCcccCC--CCCc----cccCC-CCCCcEEEEEecC--CcchhhHHHh
Q 047959          205 LMHLNFGSITLPAPPKNN----SSPL-KNLIFISALHPS--SCTP----DILGR-LPNVQTLRISGDL--SYYHSGVSKS  270 (478)
Q Consensus       205 L~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~--~~~~----~~l~~-l~~L~~L~l~~~~--~~~~~~l~~~  270 (478)
                      |++|++++|.+....+..    +..+ ++|++|++.+|.  ...+    ..+.. .++|++|++++|.  ......++..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999887665444332    2233 677777777766  1111    12333 2466666666663  1122344444


Q ss_pred             ccCCC-CCCEEEEEecCcccccCcc-c-cccccCC-CCceEEEEEeecCCCCCcC----cccC-CCCCCeEEEeeCcccC
Q 047959          271 LCQLH-KLECLKLVNEGKMRQLSRM-I-LSEYKFP-PSLTQLSLSNTELVEDPMP----TLEE-LPHLEVLKLKQNSYLE  341 (478)
Q Consensus       271 l~~~~-~L~~L~l~~~~~l~~~p~~-~-~~~~~~~-~~L~~L~l~~~~~~~~~~~----~l~~-l~~L~~L~L~~~~~~~  341 (478)
                      +..++ +|++|++++ +.++..+.. + ..+.. . ++|+.|++++|.+......    .+.. .++|++|+|++|.+.+
T Consensus       162 l~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~-~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          162 LAAIPANVNSLNLRG-NNLASKNCAELAKFLAS-IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HHTSCTTCCEEECTT-SCGGGSCHHHHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             HhcCCccccEeeecC-CCCchhhHHHHHHHHHh-CCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            44444 666666665 444322210 0 01222 3 3666666666665443222    2222 2356666666665544


Q ss_pred             cee---EEeCCCCCcccceeEEecC
Q 047959          342 RKL---ACVGCSSFPQLKILHLKSM  363 (478)
Q Consensus       342 ~~~---~~~~~~~~~~L~~L~L~~~  363 (478)
                      ...   ... ...+++|++|++++|
T Consensus       240 ~~~~~l~~~-~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          240 PSLENLKLL-KDSLKHLQTVYLDYD  263 (362)
T ss_dssp             CCHHHHHHT-TTTTTTCSEEEEEHH
T ss_pred             HHHHHHHHH-HhcCCCccEEEeccC
Confidence            321   111 244555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.65  E-value=4.1e-19  Score=184.43  Aligned_cols=276  Identities=18%  Similarity=0.101  Sum_probs=160.2

Q ss_pred             CCCCeEeEEEecCCC-CC--cCCccCCCCCCCceEeecCCCCCc-----cchhhhCCCCCcEEeCCCCc--C--cccchh
Q 047959          131 KKFKHLRVLNLGSAV-LD--QYPPGLENLFYLKYLKLNIPSLKC-----LPSLLCTLLNLQTLEMPSSY--I--DHSPED  198 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~-l~--~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~--l--~~lp~~  198 (478)
                      ..+++|++|++++|. ++  .++..+.++++|++|++++|.+..     ++.....+++|++|++++|.  +  ..++..
T Consensus       127 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l  206 (594)
T 2p1m_B          127 KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL  206 (594)
T ss_dssp             HHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred             HhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence            367788888888884 54  244445577888888888877552     33333466788888888875  2  122233


Q ss_pred             hhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccC-------------------------------C-CCCccccC
Q 047959          199 IWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHP-------------------------------S-SCTPDILG  246 (478)
Q Consensus       199 i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-------------------------------~-~~~~~~l~  246 (478)
                      +..+++|++|++++|.....++..+..+++|+.|.+..+                               . ...+..+.
T Consensus       207 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~  286 (594)
T 2p1m_B          207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS  286 (594)
T ss_dssp             HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH
T ss_pred             HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHH
Confidence            345788888888665222223334445556666653322                               1 12223334


Q ss_pred             CCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEee---------cCCC
Q 047959          247 RLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNT---------ELVE  317 (478)
Q Consensus       247 ~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~---------~~~~  317 (478)
                      .+++|++|++++|. .....+...+..+++|+.|+++++..-..++.   .... +++|+.|++.+|         .+++
T Consensus       287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~---l~~~-~~~L~~L~L~~~~~~g~~~~~~l~~  361 (594)
T 2p1m_B          287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV---LAST-CKDLRELRVFPSEPFVMEPNVALTE  361 (594)
T ss_dssp             HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH---HHHH-CTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred             hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHH---HHHh-CCCCCEEEEecCcccccccCCCCCH
Confidence            67889999999885 33444555677889999999987421113332   3334 678888888543         2222


Q ss_pred             CCcCcc-cCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEe-----cCCCCCceee--------------------
Q 047959          318 DPMPTL-EELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLK-----SMLWLEEWTM--------------------  371 (478)
Q Consensus       318 ~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~-----~~~~l~~l~~--------------------  371 (478)
                      .....+ ..+++|+.|.+..+.+++..+... ...+++|+.|++.     +|+.++..|.                    
T Consensus       362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l-~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~  440 (594)
T 2p1m_B          362 QGLVSVSMGCPKLESVLYFCRQMTNAALITI-ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS  440 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEEESCCCHHHHHHH-HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECC
T ss_pred             HHHHHHHHhchhHHHHHHhcCCcCHHHHHHH-HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeec
Confidence            111222 236777777666555554332221 1245667777776     3344442111                    


Q ss_pred             ---------CCC-cccccceeEEecCCCCCCCcccc-CCCCCCCEEEEecCc
Q 047959          372 ---------GAG-AMPKLESLILNPCAYLRKLPEEQ-WCIKSLCKLELHWPQ  412 (478)
Q Consensus       372 ---------~~~-~~~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~  412 (478)
                               ... .+++|+.|++++|......+..+ .++++|+.|++++|+
T Consensus       441 ~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~  492 (594)
T 2p1m_B          441 GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP  492 (594)
T ss_dssp             SSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred             CcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence                     001 26778888887776322222222 568899999999998

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.65  E-value=2.7e-16  Score=161.97  Aligned_cols=192  Identities=19%  Similarity=0.201  Sum_probs=155.3

Q ss_pred             eEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCC
Q 047959          135 HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSIT  214 (478)
Q Consensus       135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~  214 (478)
                      .+..+.+..+.+..++. +..+.+|+.|++++|.+..+| .+..+++|+.|+|++|.+..+|. +..+++|++|++++|.
T Consensus        22 ~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~   98 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK   98 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred             HHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC
Confidence            34445566666654433 567889999999999999887 68999999999999999999987 8999999999998886


Q ss_pred             CCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCcc
Q 047959          215 LPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRM  294 (478)
Q Consensus       215 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~  294 (478)
                      +.. + +.+..+++|+.|++.+|.-..+..+..+++|+.|++++|.  ... + ..+..+++|+.|++++ +.+..++  
T Consensus        99 l~~-l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~--l~~-l-~~l~~l~~L~~L~Ls~-N~l~~~~--  169 (605)
T 1m9s_A           99 IKD-L-SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK--ITD-I-TVLSRLTKLDTLSLED-NQISDIV--  169 (605)
T ss_dssp             CCC-C-TTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSC--CCC-C-GGGGSCTTCSEEECCS-SCCCCCG--
T ss_pred             CCC-C-hhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCc--cCC-c-hhhcccCCCCEEECcC-CcCCCch--
Confidence            653 3 3789999999999999982234568899999999999984  322 2 5678899999999997 7777766  


Q ss_pred             ccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCce
Q 047959          295 ILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERK  343 (478)
Q Consensus       295 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~  343 (478)
                        .+.. +++|+.|+|++|.+.+.  +.+..+++|+.|+|++|.+....
T Consensus       170 --~l~~-l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          170 --PLAG-LTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             --GGTT-CTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred             --hhcc-CCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence              3566 89999999999988653  57889999999999988876654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.64  E-value=6.9e-16  Score=157.26  Aligned_cols=179  Identities=18%  Similarity=0.202  Sum_probs=140.8

Q ss_pred             eEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCC
Q 047959          135 HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSIT  214 (478)
Q Consensus       135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~  214 (478)
                      +|+.|++++|.++.+|..+.  ++|++|++++|.++.+|   ..+++|++|++++|.+..+|. +.+  +|++|++++|.
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~  131 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ  131 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence            68899999999998988764  78999999999999998   567899999999999988988 655  99999998887


Q ss_pred             CCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCc
Q 047959          215 LPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSR  293 (478)
Q Consensus       215 ~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~  293 (478)
                      +.. +|.   .+++|+.|++.+|. ..++.   .+++|+.|++++|.  .. .++. +.  ++|+.|++++ +.++.+|.
T Consensus       132 l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~--L~-~lp~-l~--~~L~~L~Ls~-N~L~~lp~  197 (571)
T 3cvr_A          132 LTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ--LT-FLPE-LP--ESLEALDVST-NLLESLPA  197 (571)
T ss_dssp             CSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC--CS-CCCC-CC--TTCCEEECCS-SCCSSCCC
T ss_pred             CCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC--CC-Ccch-hh--CCCCEEECcC-CCCCchhh
Confidence            665 665   67899999999888 54554   57889999999883  22 2444 43  8899999987 78887774


Q ss_pred             cccccccCCCCc-------eEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCce
Q 047959          294 MILSEYKFPPSL-------TQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERK  343 (478)
Q Consensus       294 ~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~  343 (478)
                          +   ..+|       +.|++++|.++. .+..+..+++|+.|+|++|.+++..
T Consensus       198 ----~---~~~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          198 ----V---PVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRI  246 (571)
T ss_dssp             ----C---C--------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred             ----H---HHhhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcC
Confidence                1   2355       889999888764 5556677888888888888877654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.63  E-value=1.4e-15  Score=134.35  Aligned_cols=154  Identities=17%  Similarity=0.193  Sum_probs=89.7

Q ss_pred             CCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCc
Q 047959          155 NLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISA  234 (478)
Q Consensus       155 ~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  234 (478)
                      .+++|++|++++|.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+....+..            
T Consensus        42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~------------  107 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPN------------  107 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCC------------
T ss_pred             hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChh------------
Confidence            4455555566555555555 4555556666666655554443 3555666666666555443333333            


Q ss_pred             ccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeec
Q 047959          235 LHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTE  314 (478)
Q Consensus       235 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~  314 (478)
                                ++.+++|+.|++++|  ......+..+..+++|+.|+++++..++.+|    .+.. +++|+.|++++|.
T Consensus       108 ----------l~~l~~L~~L~Ls~n--~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~----~l~~-l~~L~~L~l~~n~  170 (197)
T 4ezg_A          108 ----------LSGLTSLTLLDISHS--AHDDSILTKINTLPKVNSIDLSYNGAITDIM----PLKT-LPELKSLNIQFDG  170 (197)
T ss_dssp             ----------CTTCTTCCEEECCSS--BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG----GGGG-CSSCCEEECTTBC
T ss_pred             ----------hcCCCCCCEEEecCC--ccCcHhHHHHhhCCCCCEEEccCCCCccccH----hhcC-CCCCCEEECCCCC
Confidence                      344455555555555  3444445566667777777777633366666    4666 7888888888887


Q ss_pred             CCCCCcCcccCCCCCCeEEEeeCcccC
Q 047959          315 LVEDPMPTLEELPHLEVLKLKQNSYLE  341 (478)
Q Consensus       315 ~~~~~~~~l~~l~~L~~L~L~~~~~~~  341 (478)
                      +++  .+.+..+++|+.|++++|.+.+
T Consensus       171 i~~--~~~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          171 VHD--YRGIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCC--CTTGGGCSSCCEEEECBC----
T ss_pred             CcC--hHHhccCCCCCEEEeeCcccCC
Confidence            754  2367778888888888777643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.62  E-value=1.5e-15  Score=135.34  Aligned_cols=121  Identities=21%  Similarity=0.287  Sum_probs=74.8

Q ss_pred             eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchh-hhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEeeCCC
Q 047959          137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNFGSIT  214 (478)
Q Consensus       137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~  214 (478)
                      +.++.+++.++.+|..+  .++|++|++++|.++.+|.. +..+++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            35666666677677554  34777777777777766654 56777777777777777777654 4667777777776665


Q ss_pred             CCCCCCCCCCCCCCCcEeCcccCC-CCCc-cccCCCCCCcEEEEEec
Q 047959          215 LPAPPKNNSSPLKNLIFISALHPS-SCTP-DILGRLPNVQTLRISGD  259 (478)
Q Consensus       215 ~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~  259 (478)
                      +....+..+..+++|++|++.++. ...+ ..+..+++|+.|++++|
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN  134 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC
Confidence            554333345666666666666554 2222 22444555555555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.60  E-value=8.8e-16  Score=141.98  Aligned_cols=171  Identities=17%  Similarity=0.177  Sum_probs=112.1

Q ss_pred             CCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEee
Q 047959          132 KFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFG  211 (478)
Q Consensus       132 ~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~  211 (478)
                      .+..+..++++++.++.++ .+..+++|++|++++|.+..+| .+..+++|++|++++|.+..+|. +..+++|++|+++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred             HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence            4555667777777777666 4677788888888888888777 67778888888888888888776 7788888888887


Q ss_pred             CCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc
Q 047959          212 SITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL  291 (478)
Q Consensus       212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~  291 (478)
                      +|.+.. +|.. .. ++|+.|++.+|.                        ... + ..+..+++|+.|++++ +.++.+
T Consensus        94 ~N~l~~-l~~~-~~-~~L~~L~L~~N~------------------------l~~-~-~~l~~l~~L~~L~Ls~-N~i~~~  143 (263)
T 1xeu_A           94 RNRLKN-LNGI-PS-ACLSRLFLDNNE------------------------LRD-T-DSLIHLKNLEILSIRN-NKLKSI  143 (263)
T ss_dssp             SSCCSC-CTTC-CC-SSCCEEECCSSC------------------------CSB-S-GGGTTCTTCCEEECTT-SCCCBC
T ss_pred             CCccCC-cCcc-cc-CcccEEEccCCc------------------------cCC-C-hhhcCcccccEEECCC-CcCCCC
Confidence            665433 3221 11 455555544443                        111 1 1345556666666655 555555


Q ss_pred             CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCc
Q 047959          292 SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLER  342 (478)
Q Consensus       292 p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~  342 (478)
                      |    .+.. +++|+.|++++|.+.+.  ..+..+++|+.|++++|.+...
T Consensus       144 ~----~l~~-l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          144 V----MLGF-LSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             G----GGGG-CTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             h----HHcc-CCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            4    4555 67777777777776554  5566777777777777766554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.59  E-value=7.7e-16  Score=142.37  Aligned_cols=123  Identities=20%  Similarity=0.232  Sum_probs=95.8

Q ss_pred             cCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEE
Q 047959          130 CKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLN  209 (478)
Q Consensus       130 ~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  209 (478)
                      +..+++|++|++++|.++.++ .+..+++|++|++++|.+..+|. +..+++|++|++++|.+..+|... . ++|++|+
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~L~  112 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIP-S-ACLSRLF  112 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCC-C-SSCCEEE
T ss_pred             hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccc-c-CcccEEE
Confidence            367889999999999999888 68899999999999999999887 999999999999999999988643 3 9999999


Q ss_pred             eeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEec
Q 047959          210 FGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGD  259 (478)
Q Consensus       210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~  259 (478)
                      +++|.+.. ++ .+..+++|+.|++.++. ... ..++.+++|+.|++++|
T Consensus       113 L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N  160 (263)
T 1xeu_A          113 LDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGN  160 (263)
T ss_dssp             CCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTS
T ss_pred             ccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCC
Confidence            98886543 22 46666777777766665 222 24445555555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.57  E-value=1.2e-15  Score=134.70  Aligned_cols=152  Identities=15%  Similarity=0.144  Sum_probs=106.9

Q ss_pred             CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcc-cchhhhccccCcEEE
Q 047959          131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDH-SPEDIWMMQKLMHLN  209 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~  209 (478)
                      ..+++|+.|++++|.++.+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.. .|..+..+++|++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            55678999999999999888 6889999999999999887765 78889999999999998865 577788999999999


Q ss_pred             eeCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959          210 FGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR  289 (478)
Q Consensus       210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~  289 (478)
                      +++|.+....|..+..+++|++|++.+|.                        ....++ .+..+++|+.|++++ +.++
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~------------------------~i~~~~-~l~~l~~L~~L~l~~-n~i~  172 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNG------------------------AITDIM-PLKTLPELKSLNIQF-DGVH  172 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCT------------------------BCCCCG-GGGGCSSCCEEECTT-BCCC
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCC------------------------CccccH-hhcCCCCCCEEECCC-CCCc
Confidence            98876655445455555555555555543                        111112 344555555555554 4455


Q ss_pred             ccCccccccccCCCCceEEEEEeecC
Q 047959          290 QLSRMILSEYKFPPSLTQLSLSNTEL  315 (478)
Q Consensus       290 ~~p~~~~~~~~~~~~L~~L~l~~~~~  315 (478)
                      .++    .+.. +++|+.|++++|++
T Consensus       173 ~~~----~l~~-l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          173 DYR----GIED-FPKLNQLYAFSQTI  193 (197)
T ss_dssp             CCT----TGGG-CSSCCEEEECBC--
T ss_pred             ChH----Hhcc-CCCCCEEEeeCccc
Confidence            544    3455 66677777776664

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.55  E-value=3.3e-15  Score=152.26  Aligned_cols=167  Identities=17%  Similarity=0.220  Sum_probs=139.2

Q ss_pred             CCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeC
Q 047959          133 FKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGS  212 (478)
Q Consensus       133 ~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~  212 (478)
                      +++|+.|++++|.++.+|   ..+++|++|++++|.++.+|. +.+  +|++|++++|.+..+|.   .+++|++|++++
T Consensus        79 ~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~  149 (571)
T 3cvr_A           79 PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADN  149 (571)
T ss_dssp             CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCS
T ss_pred             cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCC
Confidence            367999999999999998   457899999999999999998 655  99999999999999988   789999999988


Q ss_pred             CCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCC-------CEEEEEe
Q 047959          213 ITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKL-------ECLKLVN  284 (478)
Q Consensus       213 ~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L-------~~L~l~~  284 (478)
                      |.+.. +|.   .+++|++|++.+|. ..++. +.  ++|+.|++++|.  .. .++. +..  +|       +.|++++
T Consensus       150 N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~--L~-~lp~-~~~--~L~~~~~~L~~L~Ls~  216 (571)
T 3cvr_A          150 NQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL--LE-SLPA-VPV--RNHHSEETEIFFRCRE  216 (571)
T ss_dssp             SCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC--CS-SCCC-CC----------CCEEEECCS
T ss_pred             CccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC--CC-chhh-HHH--hhhcccccceEEecCC
Confidence            87664 665   57899999999998 55666 65  899999999984  22 4444 333  66       9999998


Q ss_pred             cCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCC
Q 047959          285 EGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEEL  326 (478)
Q Consensus       285 ~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l  326 (478)
                       +.++.+|.   .+.. +++|+.|++++|.+++..+..+..+
T Consensus       217 -N~l~~lp~---~l~~-l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          217 -NRITHIPE---NILS-LDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             -SCCCCCCG---GGGG-SCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             -CcceecCH---HHhc-CCCCCEEEeeCCcCCCcCHHHHHHh
Confidence             89999999   8999 9999999999999987666665544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.54  E-value=1.6e-14  Score=128.56  Aligned_cols=180  Identities=17%  Similarity=0.199  Sum_probs=110.5

Q ss_pred             CceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccC
Q 047959          159 LKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHP  237 (478)
Q Consensus       159 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  237 (478)
                      -+.++.++++++.+|..+  .++|++|++++|.+..+|.. +..+++|++|++++|.+....+..+..+++|++|++.++
T Consensus         9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            356777888888888655  46899999999988888754 578889999999777665433334556666666666555


Q ss_pred             C-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCC
Q 047959          238 S-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELV  316 (478)
Q Consensus       238 ~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~  316 (478)
                      . ...+                         +..+..+++|+.|++++ +.++.+|..  .+.. +++|+.|++++|.++
T Consensus        87 ~l~~~~-------------------------~~~~~~l~~L~~L~L~~-N~l~~~~~~--~~~~-l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A           87 QLQSLP-------------------------NGVFDKLTQLKELALNT-NQLQSLPDG--VFDK-LTQLKDLRLYQNQLK  137 (208)
T ss_dssp             CCCCCC-------------------------TTTTTTCTTCCEEECCS-SCCCCCCTT--TTTT-CTTCCEEECCSSCCS
T ss_pred             cCCccC-------------------------HhHhcCccCCCEEEcCC-CcCcccCHh--Hhcc-CCcCCEEECCCCccc
Confidence            4 2221                         12234445555555554 445545430  2455 667777777777666


Q ss_pred             CCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeCCCcccc
Q 047959          317 EDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPK  378 (478)
Q Consensus       317 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~  378 (478)
                      +.....+..+++|+.|++++|.+         ...+++|+.|.++.+..-..+|...+.++.
T Consensus       138 ~~~~~~~~~l~~L~~L~l~~N~~---------~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          138 SVPDGVFDRLTSLQYIWLHDNPW---------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSCCB---------CCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             eeCHHHhccCCCccEEEecCCCe---------ecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence            55444566677777777776644         234566666666664333355555544443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.54  E-value=3.4e-14  Score=127.63  Aligned_cols=100  Identities=15%  Similarity=0.232  Sum_probs=60.2

Q ss_pred             eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCccc-chhhhccccCcEEEeeCCC
Q 047959          137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHS-PEDIWMMQKLMHLNFGSIT  214 (478)
Q Consensus       137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~  214 (478)
                      +.++.+++.++.+|..+.  ++|+.|++++|.+..+|. .+..+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            456666666666666543  467777777777765554 466667777777777766665 4556666777777776665


Q ss_pred             CCCCCCCCCCCCCCCcEeCcccCC
Q 047959          215 LPAPPKNNSSPLKNLIFISALHPS  238 (478)
Q Consensus       215 ~~~~~~~~~~~l~~L~~L~l~~~~  238 (478)
                      +....+..+..+++|++|++.++.
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~  115 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANK  115 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCHhHccCCCCCCEEECCCCC
Confidence            443222234455555555555444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.52  E-value=2.8e-14  Score=128.11  Aligned_cols=150  Identities=15%  Similarity=0.150  Sum_probs=94.4

Q ss_pred             eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccch--hhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEeeCC
Q 047959          137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS--LLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFGSI  213 (478)
Q Consensus       137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~  213 (478)
                      +.++++++.++.+|..+..  .+++|++++|.++.++.  .+..+++|++|++++|.+..++. .+..+++|++|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            4788888888877776543  56788888888886632  36778888888888888777764 5777888888888777


Q ss_pred             CCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc-C
Q 047959          214 TLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL-S  292 (478)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~-p  292 (478)
                      .+....+..+..+++|++|++.++.                        .....+..+..+++|+.|++++ +.++.+ |
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~------------------------l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~  146 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNR------------------------ITCVGNDSFIGLSSVRLLSLYD-NQITTVAP  146 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSC------------------------CCCBCTTSSTTCTTCSEEECTT-SCCCCBCT
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCc------------------------CCeECHhHcCCCccCCEEECCC-CcCCEECH
Confidence            6654444445566666666655554                        1111223333444455555544 444444 3


Q ss_pred             ccccccccCCCCceEEEEEeecCCC
Q 047959          293 RMILSEYKFPPSLTQLSLSNTELVE  317 (478)
Q Consensus       293 ~~~~~~~~~~~~L~~L~l~~~~~~~  317 (478)
                      .   .+.. +++|+.|++++|.+..
T Consensus       147 ~---~~~~-l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          147 G---AFDT-LHSLSTLNLLANPFNC  167 (220)
T ss_dssp             T---TTTT-CTTCCEEECCSCCEEC
T ss_pred             H---HhcC-CCCCCEEEecCcCCcC
Confidence            4   4555 6666666666666543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.52  E-value=5.9e-14  Score=126.86  Aligned_cols=149  Identities=19%  Similarity=0.213  Sum_probs=94.6

Q ss_pred             eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEeeCCC
Q 047959          137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNFGSIT  214 (478)
Q Consensus       137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~  214 (478)
                      +.++.+++.++.+|..+.  ++|++|++++|.+..+ |..+..+++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus        22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            457777777777777554  6788888888888755 55677788888888888877777644 4677888888887776


Q ss_pred             CCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCc
Q 047959          215 LPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSR  293 (478)
Q Consensus       215 ~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~  293 (478)
                      +....+..+..+++|++|++.++. ..++                          ..+..+++|+.|++++ +.++.+|.
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--------------------------~~~~~l~~L~~L~L~~-N~l~~~~~  152 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLTELP--------------------------RGIERLTHLTHLALDQ-NQLKSIPH  152 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCSCC--------------------------TTGGGCTTCSEEECCS-SCCCCCCT
T ss_pred             CCccChhHhCcchhhCeEeccCCcccccC--------------------------cccccCCCCCEEECCC-CcCCccCH
Confidence            554333345555555555555544 3333                          3334455555555554 55555553


Q ss_pred             cccccccCCCCceEEEEEeecCCC
Q 047959          294 MILSEYKFPPSLTQLSLSNTELVE  317 (478)
Q Consensus       294 ~~~~~~~~~~~L~~L~l~~~~~~~  317 (478)
                      .  .+.. +++|+.|++++|.+..
T Consensus       153 ~--~~~~-l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          153 G--AFDR-LSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             T--TTTT-CTTCCEEECTTSCBCT
T ss_pred             H--HHhC-CCCCCEEEeeCCCccC
Confidence            1  3455 6677777777776544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.51  E-value=1.1e-14  Score=141.27  Aligned_cols=170  Identities=21%  Similarity=0.225  Sum_probs=112.9

Q ss_pred             eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchh-hh-CCCCCcEEeCCCCcCcccch-hhhccccCcEEEeeCC
Q 047959          137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSL-LC-TLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFGSI  213 (478)
Q Consensus       137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~-~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~  213 (478)
                      ++++++++.++.+|..+.  ..+++|++++|.++.++.. +. .+++|++|++++|.+..++. .+..+++|++|++++|
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            578999999999998664  3689999999999987765 44 88999999999999988874 5888999999999888


Q ss_pred             CCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHh-c---cCCCCCCEEEEEecCc
Q 047959          214 TLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKS-L---CQLHKLECLKLVNEGK  287 (478)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~-l---~~~~~L~~L~l~~~~~  287 (478)
                      .+....+..+..+++|+.|++.++.  ...+..+.++++|+.|++++|.  .. .++.. +   ..+++|+.|++++ +.
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~--l~-~l~~~~~~~~~~l~~L~~L~L~~-N~  174 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ--IS-RFPVELIKDGNKLPKLMLLDLSS-NK  174 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CC-SCCGGGTC----CTTCCEEECCS-SC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc--CC-eeCHHHhcCcccCCcCCEEECCC-CC
Confidence            7665555567777888888777776  2234456666666666666652  11 11111 1   3455555555554 55


Q ss_pred             ccccCccccccccCCCC--ceEEEEEeecC
Q 047959          288 MRQLSRMILSEYKFPPS--LTQLSLSNTEL  315 (478)
Q Consensus       288 l~~~p~~~~~~~~~~~~--L~~L~l~~~~~  315 (478)
                      ++.+|..  .+.. ++.  |+.|++.+|.+
T Consensus       175 l~~l~~~--~~~~-l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          175 LKKLPLT--DLQK-LPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CCCCCHH--HHHH-SCHHHHTTEECCSSCE
T ss_pred             CCccCHH--Hhhh-ccHhhcceEEecCCCc
Confidence            5544421  2333 333  24455555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.51  E-value=1.8e-14  Score=139.63  Aligned_cols=124  Identities=21%  Similarity=0.199  Sum_probs=66.6

Q ss_pred             EeEEEecCCCCCcCCcc-CC-CCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEee
Q 047959          136 LRVLNLGSAVLDQYPPG-LE-NLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFG  211 (478)
Q Consensus       136 L~~L~L~~~~l~~lp~~-~~-~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~  211 (478)
                      ++.|+|++|.++.++.. +. .+++|++|++++|.+..++. .+..+++|++|++++|.+..++. .+..+++|++|+++
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  120 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY  120 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence            55566666665544433 33 55566666666666554442 35555666666666665555543 34555666666665


Q ss_pred             CCCCCCCCCCCCCCCCCCcEeCcccCC-CCCcccc----CCCCCCcEEEEEec
Q 047959          212 SITLPAPPKNNSSPLKNLIFISALHPS-SCTPDIL----GRLPNVQTLRISGD  259 (478)
Q Consensus       212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l----~~l~~L~~L~l~~~  259 (478)
                      +|.+....|..+..+++|+.|++.++. ..++..+    ..+++|+.|++++|
T Consensus       121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A          121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred             CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence            555544444555556666666655555 3333322    34556666666655

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.50  E-value=8.9e-14  Score=125.69  Aligned_cols=154  Identities=21%  Similarity=0.157  Sum_probs=111.2

Q ss_pred             CCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCccc-chhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCccc
Q 047959          158 YLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHS-PEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALH  236 (478)
Q Consensus       158 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  236 (478)
                      .-+.++.+++.+..+|..+.  ++|++|++++|.+..+ |..+..+++|++|++++|.+....+..+..+++|+.|++.+
T Consensus        20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            45678888888888886554  7888888888887777 45677888888888877765433233345555555555544


Q ss_pred             CCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCC
Q 047959          237 PSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELV  316 (478)
Q Consensus       237 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~  316 (478)
                      +.                        .....+..+..+++|+.|++++ +.++.+|.   .+.. +++|+.|++++|.+.
T Consensus        98 N~------------------------l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~---~~~~-l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           98 NQ------------------------LTVLPSAVFDRLVHLKELFMCC-NKLTELPR---GIER-LTHLTHLALDQNQLK  148 (229)
T ss_dssp             SC------------------------CCCCCTTTTTTCTTCCEEECCS-SCCCSCCT---TGGG-CTTCSEEECCSSCCC
T ss_pred             Cc------------------------CCccChhHhCcchhhCeEeccC-CcccccCc---cccc-CCCCCEEECCCCcCC
Confidence            43                        2222223355677788888876 77888998   8888 999999999999988


Q ss_pred             CCCcCcccCCCCCCeEEEeeCcccCc
Q 047959          317 EDPMPTLEELPHLEVLKLKQNSYLER  342 (478)
Q Consensus       317 ~~~~~~l~~l~~L~~L~L~~~~~~~~  342 (478)
                      ......+..+++|+.|++++|.+...
T Consensus       149 ~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          149 SIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             ccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            76667788999999999998887643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.49  E-value=1.2e-13  Score=124.06  Aligned_cols=127  Identities=17%  Similarity=0.225  Sum_probs=111.2

Q ss_pred             CeEeEEEecCCCCCcCCc-cCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEe
Q 047959          134 KHLRVLNLGSAVLDQYPP-GLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNF  210 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l  210 (478)
                      +.|+.|++++|.++.++. .+..+++|++|++++|.+..+ |..+.++++|++|++++|.+..+|.. +..+++|++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            579999999999997766 589999999999999999966 77899999999999999999999876 578999999999


Q ss_pred             eCCCCCCCCCCCCCCCCCCcEeCcccCC-CCC-ccccCCCCCCcEEEEEecC
Q 047959          211 GSITLPAPPKNNSSPLKNLIFISALHPS-SCT-PDILGRLPNVQTLRISGDL  260 (478)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~  260 (478)
                      ++|.+....|..+..+++|+.|++.++. ... +..+..+++|+.|++++|.
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            9998887778889999999999999988 333 3457888889999888874

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.49  E-value=1.5e-14  Score=147.99  Aligned_cols=89  Identities=24%  Similarity=0.346  Sum_probs=75.7

Q ss_pred             eecccCCChhhHHHHHh-----------HhcccCCCceechhHHHHHHHHc--CCCC-----CChHHHHHHHHHHHHHcc
Q 047959            3 QIFSVMELPFHLKVCCI-----------YLCAFPPSIEISTEQLYQLWVAE--GFIP-----YNSEETAKHYLKELIHRG   64 (478)
Q Consensus         3 ~klSY~~L~~~~k~cFl-----------~~a~Fp~~~~i~~~~Li~~w~~~--g~~~-----~~~~~~~~~~~~~L~~~~   64 (478)
                      +++||++||.++|.||+           |||+||+|+.|+    +++|+|+  ||+.     ...+++++ |+++|+++|
T Consensus       367 l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rs  441 (549)
T 2a5y_B          367 TPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRG  441 (549)
T ss_dssp             SSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBS
T ss_pred             HhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcC
Confidence            68999999999999999           999999999998    8999999  9997     34788888 999999999


Q ss_pred             ceeeeecCCCCcEeEEEeCHHHHHHHHHHhhhcCc
Q 047959           65 FIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEF   99 (478)
Q Consensus        65 ll~~~~~~~~g~~~~~~mhdli~dl~~~~~~~e~~   99 (478)
                      |++....+   +...|+|||+||++|+.+++++++
T Consensus       442 Ll~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          442 ALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             SCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             CeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence            99987643   336799999999999998876643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.48  E-value=7.5e-17  Score=165.07  Aligned_cols=196  Identities=19%  Similarity=0.213  Sum_probs=135.2

Q ss_pred             CCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCc--------------CcccchhhhccccCcEEE-eeCCCCCCC
Q 047959          154 ENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSY--------------IDHSPEDIWMMQKLMHLN-FGSITLPAP  218 (478)
Q Consensus       154 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--------------l~~lp~~i~~l~~L~~L~-l~~~~~~~~  218 (478)
                      ...++|+.|++++|.++.+|..+++|++|+.|+++++.              ....|..++.+++|+.|+ ++.|... .
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-D  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-H
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-h
Confidence            56778888888888888888888888888888886652              234456677777777777 3322110 0


Q ss_pred             CCC------CCCC--CCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959          219 PKN------NSSP--LKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR  289 (478)
Q Consensus       219 ~~~------~~~~--l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~  289 (478)
                      ++.      .+..  ...|+.|++.++. ..++. ++.+++|+.|++++|.  .. .+|..+..+++|+.|++++ +.++
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~--l~-~lp~~~~~l~~L~~L~Ls~-N~l~  499 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR--LR-ALPPALAALRCLEVLQASD-NALE  499 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC--CC-CCCGGGGGCTTCCEEECCS-SCCC
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccc--cc-ccchhhhcCCCCCEEECCC-CCCC
Confidence            000      0000  1247778888877 55554 7888888888888873  33 6677888888888888887 7788


Q ss_pred             ccCccccccccCCCCceEEEEEeecCCCCC-cCcccCCCCCCeEEEeeCcccCceeEEeC-CCCCcccceeEE
Q 047959          290 QLSRMILSEYKFPPSLTQLSLSNTELVEDP-MPTLEELPHLEVLKLKQNSYLERKLACVG-CSSFPQLKILHL  360 (478)
Q Consensus       290 ~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-~~~~~~L~~L~L  360 (478)
                      .+|    .++. +++|+.|++++|.+++.. +..++.+++|+.|+|++|.+.+..+.... ...+|+|+.|++
T Consensus       500 ~lp----~l~~-l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          500 NVD----GVAN-LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCG----GGTT-CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCc----ccCC-CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            777    5777 888999999888887765 77888888999999988887765432100 223678887753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.47  E-value=9.2e-14  Score=124.76  Aligned_cols=153  Identities=14%  Similarity=0.137  Sum_probs=115.1

Q ss_pred             CceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccch--hhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCccc
Q 047959          159 LKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPE--DIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALH  236 (478)
Q Consensus       159 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  236 (478)
                      -+.++++++.++.+|..+.  ..+++|++++|.+..++.  .+..+++|++|++++|.+....+..+..+          
T Consensus        13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l----------   80 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA----------   80 (220)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTC----------
T ss_pred             CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCC----------
Confidence            4688888888888887654  467899999998888742  36788888888887775544333344444          


Q ss_pred             CCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc-CccccccccCCCCceEEEEEeecC
Q 047959          237 PSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL-SRMILSEYKFPPSLTQLSLSNTEL  315 (478)
Q Consensus       237 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~-p~~~~~~~~~~~~L~~L~l~~~~~  315 (478)
                                  ++|++|++++|  ......+..+..+++|+.|++++ +.++.+ |.   .+.. +++|+.|++++|.+
T Consensus        81 ------------~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~---~~~~-l~~L~~L~L~~N~l  141 (220)
T 2v70_A           81 ------------SGVNEILLTSN--RLENVQHKMFKGLESLKTLMLRS-NRITCVGND---SFIG-LSSVRLLSLYDNQI  141 (220)
T ss_dssp             ------------TTCCEEECCSS--CCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTT---SSTT-CTTCSEEECTTSCC
T ss_pred             ------------CCCCEEECCCC--ccCccCHhHhcCCcCCCEEECCC-CcCCeECHh---HcCC-CccCCEEECCCCcC
Confidence                        45555555555  23333344577889999999998 788876 55   6777 99999999999999


Q ss_pred             CCCCcCcccCCCCCCeEEEeeCcccCc
Q 047959          316 VEDPMPTLEELPHLEVLKLKQNSYLER  342 (478)
Q Consensus       316 ~~~~~~~l~~l~~L~~L~L~~~~~~~~  342 (478)
                      ++..+..+..+++|+.|+|++|.+...
T Consensus       142 ~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          142 TTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            887788999999999999999987643

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.45  E-value=1.1e-14  Score=153.51  Aligned_cols=111  Identities=15%  Similarity=0.118  Sum_probs=71.8

Q ss_pred             cCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCC
Q 047959          148 QYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLK  227 (478)
Q Consensus       148 ~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~  227 (478)
                      ..+..+..+.+|+.|+|++|.+..+|..+..+++|++|+|++|.+..+|..++.+++|++|++++|.+. .+|..++.++
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  293 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF  293 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred             cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence            334456666677777777777666666666677777777777766667766667777777777666655 5666666677


Q ss_pred             CCcEeCcccCC-CCCccccCCCCCCcEEEEEec
Q 047959          228 NLIFISALHPS-SCTPDILGRLPNVQTLRISGD  259 (478)
Q Consensus       228 ~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~  259 (478)
                      +|++|++.+|. ..+|..++.+++|+.|++++|
T Consensus       294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS
T ss_pred             CCCEEECCCCCCCccChhhhcCCCccEEeCCCC
Confidence            77777776666 556666777777777777776

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.45  E-value=9.8e-14  Score=118.98  Aligned_cols=106  Identities=20%  Similarity=0.121  Sum_probs=81.7

Q ss_pred             CCCeEeEEEecCCCCC--cCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcc-cchhhhccccCcEE
Q 047959          132 KFKHLRVLNLGSAVLD--QYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDH-SPEDIWMMQKLMHL  208 (478)
Q Consensus       132 ~~~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L  208 (478)
                      ..+.|+.|++++|.++  .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            3467899999999988  8888888999999999999998877 678889999999999998877 77777779999999


Q ss_pred             EeeCCCCCCC-CCCCCCCCCCCcEeCcccCC
Q 047959          209 NFGSITLPAP-PKNNSSPLKNLIFISALHPS  238 (478)
Q Consensus       209 ~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~  238 (478)
                      ++++|.+... .+..+..+++|+.|++.+|.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~  131 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCE  131 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence            9977755431 11344455555555554444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.44  E-value=4.8e-14  Score=118.37  Aligned_cols=106  Identities=16%  Similarity=0.121  Sum_probs=85.2

Q ss_pred             CCCeEeEEEecCCCCC--cCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcc-cchhhhccccCcEE
Q 047959          132 KFKHLRVLNLGSAVLD--QYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDH-SPEDIWMMQKLMHL  208 (478)
Q Consensus       132 ~~~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L  208 (478)
                      ..++|+.|++++|.++  .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+..+++|++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            4467899999999988  8888889999999999999999877 678899999999999998887 77777789999999


Q ss_pred             EeeCCCCCCC-CCCCCCCCCCCcEeCcccCC
Q 047959          209 NFGSITLPAP-PKNNSSPLKNLIFISALHPS  238 (478)
Q Consensus       209 ~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~  238 (478)
                      ++++|.+... .+..+..+++|++|++.+|.
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence            9977765431 22455666666666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.41  E-value=6.7e-13  Score=116.42  Aligned_cols=122  Identities=16%  Similarity=0.171  Sum_probs=99.0

Q ss_pred             eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchh--hhCCCCCcEEeCCCCcCccc-chhhhccccCcEEEeeCC
Q 047959          137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSL--LCTLLNLQTLEMPSSYIDHS-PEDIWMMQKLMHLNFGSI  213 (478)
Q Consensus       137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~--~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~  213 (478)
                      ++++++++.++.+|..+..  +|++|++++|.+..++..  ++.+++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            6789999999988887654  899999999999887754  88899999999999988877 667888999999999888


Q ss_pred             CCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecC
Q 047959          214 TLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDL  260 (478)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~  260 (478)
                      .+....+..+..+++|++|++.++.  ...+..+..+++|+.|++++|.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            7776666668888888888888877  3445667777788888877774

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.40  E-value=1.8e-12  Score=113.71  Aligned_cols=122  Identities=20%  Similarity=0.258  Sum_probs=103.2

Q ss_pred             eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEeeCCCC
Q 047959          137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFGSITL  215 (478)
Q Consensus       137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~  215 (478)
                      ++++++++.++.+|..+.  .+|++|++++|.++.+|..+..+++|++|++++|.+..++. .+..+++|++|++++|.+
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            578999999999998664  58999999999999999999999999999999999988874 588999999999988887


Q ss_pred             CCCCCCCCCCCCCCcEeCcccCC-CCCcc-ccCCCCCCcEEEEEecC
Q 047959          216 PAPPKNNSSPLKNLIFISALHPS-SCTPD-ILGRLPNVQTLRISGDL  260 (478)
Q Consensus       216 ~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~  260 (478)
                      ....+..+..+++|+.|++.++. ...+. .+..+++|+.|++++|.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            77667778889999999998887 44443 47788888888888874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.39  E-value=2.2e-13  Score=116.77  Aligned_cols=133  Identities=14%  Similarity=0.070  Sum_probs=79.1

Q ss_pred             CCCCceEeecCCCCC--ccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeC
Q 047959          156 LFYLKYLKLNIPSLK--CLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFIS  233 (478)
Q Consensus       156 l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  233 (478)
                      .++|+.|++++|.+.  .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+...+|..+..+++|++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            356777777777776  6776667777777777777766666 5566777777777776666554554455566666666


Q ss_pred             cccCC-CCCc--cccCCCCCCcEEEEEecCCcchhhHH---HhccCCCCCCEEEEEecCcccccC
Q 047959          234 ALHPS-SCTP--DILGRLPNVQTLRISGDLSYYHSGVS---KSLCQLHKLECLKLVNEGKMRQLS  292 (478)
Q Consensus       234 l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~l~---~~l~~~~~L~~L~l~~~~~l~~~p  292 (478)
                      +.+|. ...+  ..+..+++|+.|++++|.  .....+   ..+..+++|+.|++++ +....+|
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~  163 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE--VTNLNDYRESVFKLLPQLTYLDGYD-REDQEAP  163 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSG--GGTSTTHHHHHHTTCSSCCEETTEE-TTSCBCC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCc--CcchHHHHHHHHHhCccCcEecCCC-CChhhcc
Confidence            66665 3322  455556666666666552  111111   2444555555555554 3444444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.37  E-value=2.9e-13  Score=117.03  Aligned_cols=126  Identities=17%  Similarity=0.178  Sum_probs=97.2

Q ss_pred             CCCCeEeEEEecCCCCCcCCccCCCCC-CCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhh-hccccCcEE
Q 047959          131 KKFKHLRVLNLGSAVLDQYPPGLENLF-YLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDI-WMMQKLMHL  208 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L  208 (478)
                      ..+..|+.|++++|.++.+|. +..+. +|++|++++|.+..+ ..+..+++|++|++++|.+..+|..+ ..+++|++|
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            457789999999999998865 55555 999999999999987 57889999999999999999988665 889999999


Q ss_pred             EeeCCCCCCCCCC--CCCCCCCCcEeCcccCC-CCCccc----cCCCCCCcEEEEEec
Q 047959          209 NFGSITLPAPPKN--NSSPLKNLIFISALHPS-SCTPDI----LGRLPNVQTLRISGD  259 (478)
Q Consensus       209 ~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~-~~~~~~----l~~l~~L~~L~l~~~  259 (478)
                      ++++|.+ ..+|.  .+..+++|+.|++.++. ...+..    +..+++|+.|+++.+
T Consensus        94 ~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           94 ILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             ECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             ECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            9987765 34454  56667777777777766 333332    566666666666665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.35  E-value=1.7e-12  Score=124.15  Aligned_cols=261  Identities=15%  Similarity=0.062  Sum_probs=166.0

Q ss_pred             CCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccch-hhhC--------CCCCcEEeCCCCcCcccch-hhhcc
Q 047959          133 FKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCT--------LLNLQTLEMPSSYIDHSPE-DIWMM  202 (478)
Q Consensus       133 ~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~--------l~~L~~L~l~~~~l~~lp~-~i~~l  202 (478)
                      +++|++|||++|.+......-+.++.++++.+..+   .+|. .+.+        +.+|+.|++.+ .+..+++ .+..|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~  123 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC  123 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred             hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence            67788899998887621111122333455555554   3332 3455        89999999988 7888875 47789


Q ss_pred             ccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC------CCCccccCCCCCCc-EEEEEecCCcchhhHHHhccCCC
Q 047959          203 QKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS------SCTPDILGRLPNVQ-TLRISGDLSYYHSGVSKSLCQLH  275 (478)
Q Consensus       203 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~------~~~~~~l~~l~~L~-~L~l~~~~~~~~~~l~~~l~~~~  275 (478)
                      ++|+.++++.|......+..|..+.++..+......      ......+.++.+|+ .+.+.... .....+...-....
T Consensus       124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~-~l~~~~~~~~~~~~  202 (329)
T 3sb4_A          124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG-KLEDEIMKAGLQPR  202 (329)
T ss_dssp             TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC-CHHHHHHHTTCCGG
T ss_pred             cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC-cHHHHHhhcccCcc
Confidence            999999997776655455667777777777654421      12233355666776 55554432 12222222223456


Q ss_pred             CCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCccc
Q 047959          276 KLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQL  355 (478)
Q Consensus       276 ~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L  355 (478)
                      +++.+.+.+.-.-..+..   .... +++|+.+++.+|.++......+.++++|+.+++.+| +. ...... +.++++|
T Consensus       203 ~~~~l~~~~~l~~~~~~~---l~~~-~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~a-F~~~~~L  275 (329)
T 3sb4_A          203 DINFLTIEGKLDNADFKL---IRDY-MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRV-FSNCGRL  275 (329)
T ss_dssp             GCSEEEEEECCCHHHHHH---HHHH-CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTT-TTTCTTC
T ss_pred             ccceEEEeeeecHHHHHH---HHHh-cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHH-hhCChhc
Confidence            777777765211111111   1123 788999999988877666678889999999999865 22 222222 6788889


Q ss_pred             c-eeEEecCCCCCcee-eCCCcccccceeEEecCCCCCCCc-cccCCCCCCCEEEE
Q 047959          356 K-ILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLP-EEQWCIKSLCKLEL  408 (478)
Q Consensus       356 ~-~L~L~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l  408 (478)
                      + .+.+.+  .++.++ ..+..+++|+.|++.++. ++.++ ..+.++++|+.++.
T Consensus       276 ~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          276 AGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEEC
T ss_pred             cEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhcc
Confidence            8 999986  677665 345678899999987764 45554 46788999998863

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.34  E-value=1.6e-12  Score=133.03  Aligned_cols=119  Identities=16%  Similarity=0.141  Sum_probs=74.6

Q ss_pred             CCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccC
Q 047959          158 YLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHP  237 (478)
Q Consensus       158 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  237 (478)
                      .|++|++++|.++.+|. ++.+++|++|++++|.+..+|..++.+++|++|++++|.+.. +| .++.+++|++|++.+|
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC
Confidence            46667777776666665 666677777777777666676666777777777776665543 45 6666777777776666


Q ss_pred             C-CCC--ccccCCCCCCcEEEEEecCCcchhh---HHHhccCCCCCCEEE
Q 047959          238 S-SCT--PDILGRLPNVQTLRISGDLSYYHSG---VSKSLCQLHKLECLK  281 (478)
Q Consensus       238 ~-~~~--~~~l~~l~~L~~L~l~~~~~~~~~~---l~~~l~~~~~L~~L~  281 (478)
                      . ...  |..++.+++|+.|++++|.  ..+.   ....+..+++|+.|+
T Consensus       519 ~l~~~~~p~~l~~l~~L~~L~L~~N~--l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          519 RLQQSAAIQPLVSCPRLVLLNLQGNS--LCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSG--GGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCcHHHhcCCCCCEEEecCCc--CCCCccHHHHHHHHCcccCccC
Confidence            6 333  6667777777777777763  2111   112233466777665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.31  E-value=4.2e-13  Score=112.54  Aligned_cols=104  Identities=15%  Similarity=0.082  Sum_probs=72.2

Q ss_pred             CCCCCceEeecCCCCC--ccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEe
Q 047959          155 NLFYLKYLKLNIPSLK--CLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFI  232 (478)
Q Consensus       155 ~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  232 (478)
                      ..++|+.|++++|.+.  .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+...+|..+..+++|++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            3467888888888887  7887778888888888888887777 567788888888887776655555555556666666


Q ss_pred             CcccCC-CCC--ccccCCCCCCcEEEEEec
Q 047959          233 SALHPS-SCT--PDILGRLPNVQTLRISGD  259 (478)
Q Consensus       233 ~l~~~~-~~~--~~~l~~l~~L~~L~l~~~  259 (478)
                      ++.+|. ...  +..++.+++|+.|++++|
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence            666665 222  144555555555555555

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.28  E-value=5.6e-12  Score=110.47  Aligned_cols=126  Identities=14%  Similarity=0.102  Sum_probs=90.4

Q ss_pred             CceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchh--hhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCccc
Q 047959          159 LKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPED--IWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALH  236 (478)
Q Consensus       159 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  236 (478)
                      -+++++++++++.+|..+..  +|++|++++|.+..++..  +..+++|++|++++|.+....|..+..+++|++|++.+
T Consensus        10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            37899999999999987653  899999999999888763  88999999999988887776777788888888888777


Q ss_pred             CC-C-CCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc-CccccccccCCCCceEEEEEee
Q 047959          237 PS-S-CTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL-SRMILSEYKFPPSLTQLSLSNT  313 (478)
Q Consensus       237 ~~-~-~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~-p~~~~~~~~~~~~L~~L~l~~~  313 (478)
                      +. . ..+..+.++++|+.|++++|                           .++.+ |.   .+.. +++|+.|++++|
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N---------------------------~l~~~~~~---~~~~-l~~L~~L~L~~N  136 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDN---------------------------QISCVMPG---SFEH-LNSLTSLNLASN  136 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSS---------------------------CCCEECTT---SSTT-CTTCCEEECTTC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCC---------------------------cCCeeCHH---Hhhc-CCCCCEEEeCCC
Confidence            75 2 22223444555555555444                           44433 44   4555 667777777777


Q ss_pred             cCCC
Q 047959          314 ELVE  317 (478)
Q Consensus       314 ~~~~  317 (478)
                      .+.+
T Consensus       137 ~l~c  140 (192)
T 1w8a_A          137 PFNC  140 (192)
T ss_dssp             CBCC
T ss_pred             CccC
Confidence            6654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.27  E-value=6.3e-12  Score=132.62  Aligned_cols=111  Identities=19%  Similarity=0.158  Sum_probs=100.9

Q ss_pred             ccccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCc
Q 047959          127 ENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLM  206 (478)
Q Consensus       127 ~~~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~  206 (478)
                      ...+..++.|++|+|++|.+..+|..+..+++|++|+|++|.++.+|..++++++|++|+|++|.+..+|..++.|++|+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~  296 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK  296 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence            45568889999999999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC
Q 047959          207 HLNFGSITLPAPPKNNSSPLKNLIFISALHPS  238 (478)
Q Consensus       207 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  238 (478)
                      +|++++|.+. .+|..++.+++|++|++.+|.
T Consensus       297 ~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          297 YFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             EEECCSSCCC-CCCSSTTSCTTCCCEECTTSC
T ss_pred             EEECCCCCCC-ccChhhhcCCCccEEeCCCCc
Confidence            9999888665 789889999999999999987

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.26  E-value=2e-11  Score=106.93  Aligned_cols=126  Identities=14%  Similarity=0.220  Sum_probs=90.0

Q ss_pred             CceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC
Q 047959          159 LKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS  238 (478)
Q Consensus       159 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  238 (478)
                      -++++++++.++.+|..+.  .+|++|++++|.+..+|..+..+++|++|++++|.+....+..+..+++|++|++.++.
T Consensus        12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            3689999999999997654  68999999999999999999999999999998887776666667777777777777765


Q ss_pred             -CC-CccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCC
Q 047959          239 -SC-TPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELV  316 (478)
Q Consensus       239 -~~-~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~  316 (478)
                       .. .+..+..+++                          |+.|++++ +.++.+|..  .+.. +++|+.|++++|.+.
T Consensus        90 l~~i~~~~f~~l~~--------------------------L~~L~L~~-N~l~~~~~~--~~~~-l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKS--------------------------LRLLSLHG-NDISVVPEG--AFND-LSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTT--------------------------CCEEECCS-SCCCBCCTT--TTTT-CTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCC--------------------------CCEEECCC-CCCCeeChh--hhhc-CccccEEEeCCCCee
Confidence             22 2223444444                          44555544 445555441  2444 666777777666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.26  E-value=4.4e-11  Score=103.27  Aligned_cols=123  Identities=21%  Similarity=0.241  Sum_probs=92.3

Q ss_pred             EeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchh-hhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEeeCC
Q 047959          136 LRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNFGSI  213 (478)
Q Consensus       136 L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~  213 (478)
                      .+.++++++.++.+|..+.  ++|++|++++|.+..+|.. +..+++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            3578888888888886543  5888888888888877654 57888888888888888888754 578888888888777


Q ss_pred             CCCCCCCCCCCCCCCCcEeCcccCC-CCCccc-cCCCCCCcEEEEEecC
Q 047959          214 TLPAPPKNNSSPLKNLIFISALHPS-SCTPDI-LGRLPNVQTLRISGDL  260 (478)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~  260 (478)
                      .+....+..+..+++|++|++.++. ...+.. +..+++|+.|++++|.
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence            7665555556778888888888777 444433 5677788888887773

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.23  E-value=1.3e-11  Score=106.52  Aligned_cols=120  Identities=13%  Similarity=0.098  Sum_probs=100.3

Q ss_pred             CCCCeeeec--------CccccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhh-hCCCCCcEEeC
Q 047959          117 KSDHLALIH--------CENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLL-CTLLNLQTLEM  187 (478)
Q Consensus       117 ~~~~lr~l~--------~~~~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l  187 (478)
                      .+.+++.|+        .+.+....++|++|++++|.++.+ ..++.+++|++|++++|.+..+|+.+ ..+++|++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            456666662        123334455999999999999977 56999999999999999999888665 89999999999


Q ss_pred             CCCcCcccch--hhhccccCcEEEeeCCCCCCCCCCC----CCCCCCCcEeCcccCC
Q 047959          188 PSSYIDHSPE--DIWMMQKLMHLNFGSITLPAPPKNN----SSPLKNLIFISALHPS  238 (478)
Q Consensus       188 ~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~  238 (478)
                      ++|.+..+|.  .+..+++|++|++++|.+. ..|..    +..+++|+.|++..+.
T Consensus        96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           96 TNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence            9999999987  7899999999999888765 55654    7889999999999887

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.21  E-value=1.2e-13  Score=121.80  Aligned_cols=121  Identities=17%  Similarity=0.168  Sum_probs=66.5

Q ss_pred             EeEEEecCC--CCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCC
Q 047959          136 LRVLNLGSA--VLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSI  213 (478)
Q Consensus       136 L~~L~L~~~--~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~  213 (478)
                      ++...+.+.  .++.+|..++.+++|++|++++|.+..+| .+..+++|++|++++|.+..+|..+..+++|++|++++|
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N  103 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence            334444433  24445556666777777777777666666 666677777777777766667666666677777777666


Q ss_pred             CCCCCCCCCCCCCCCCcEeCcccCC-CCCc--cccCCCCCCcEEEEEec
Q 047959          214 TLPAPPKNNSSPLKNLIFISALHPS-SCTP--DILGRLPNVQTLRISGD  259 (478)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~  259 (478)
                      .+.. +| .+..+++|+.|++.++. ...+  ..+..+++|+.|++++|
T Consensus       104 ~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          104 QIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             ECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             cCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence            4432 22 23334444444444433 1111  13444444444444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.17  E-value=1.3e-10  Score=99.57  Aligned_cols=101  Identities=20%  Similarity=0.265  Sum_probs=79.2

Q ss_pred             EeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEeeCC
Q 047959          136 LRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNFGSI  213 (478)
Q Consensus       136 L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~  213 (478)
                      .+.++++++.++.+|..+.  ++|++|++++|.++.+ |..+..+++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            4688999999988887764  7899999999999876 55688899999999999988888765 478889999999877


Q ss_pred             CCCCCCCCCCCCCCCCcEeCcccCC
Q 047959          214 TLPAPPKNNSSPLKNLIFISALHPS  238 (478)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~l~~~~  238 (478)
                      .+....+..+..+++|+.|++.++.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            7665444456677777777766654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.16  E-value=1.8e-10  Score=98.97  Aligned_cols=100  Identities=24%  Similarity=0.304  Sum_probs=80.7

Q ss_pred             eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEeeCCC
Q 047959          137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNFGSIT  214 (478)
Q Consensus       137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~  214 (478)
                      +.++++++.++.+|..+.  .+|++|++++|.+..+ |..+.++++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            678999999998888764  7899999999999976 55788899999999999999988876 4788999999998877


Q ss_pred             CCCCCCCCCCCCCCCcEeCcccCC
Q 047959          215 LPAPPKNNSSPLKNLIFISALHPS  238 (478)
Q Consensus       215 ~~~~~~~~~~~l~~L~~L~l~~~~  238 (478)
                      +....+..+..+++|+.|++.++.
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             cceeCHHHhccccCCCEEEeCCCC
Confidence            664334447777777777777665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.16  E-value=1.6e-10  Score=99.64  Aligned_cols=106  Identities=22%  Similarity=0.238  Sum_probs=91.6

Q ss_pred             CCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccchh-hhCCCCCcEEeCCCCcCcccchh-hhccccCcEEE
Q 047959          133 FKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLN  209 (478)
Q Consensus       133 ~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~  209 (478)
                      .+.|+.|++++|.++.+|.. ++.+++|++|++++|.++.+|.. +..+++|++|++++|.+..+|.. +..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            36799999999999977765 78999999999999999988765 68999999999999999998865 67899999999


Q ss_pred             eeCCCCCCCCCCCCCCCCCCcEeCcccCC
Q 047959          210 FGSITLPAPPKNNSSPLKNLIFISALHPS  238 (478)
Q Consensus       210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  238 (478)
                      +++|.+....+..+..+++|++|++.++.
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence            98887764444446889999999999886

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.10  E-value=2.8e-12  Score=113.02  Aligned_cols=145  Identities=21%  Similarity=0.232  Sum_probs=87.2

Q ss_pred             CCceEeecCC--CCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcc
Q 047959          158 YLKYLKLNIP--SLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISAL  235 (478)
Q Consensus       158 ~L~~L~l~~~--~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  235 (478)
                      .|+...+.++  .++.+|..+..+++|++|++++|.+..+| .+..+++|++|++++|.+. .+|..+..+         
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~---------   92 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVA---------   92 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH---------
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcC---------
Confidence            4555555543  46677778999999999999999888888 7889999999999777554 344333333         


Q ss_pred             cCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecC
Q 047959          236 HPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTEL  315 (478)
Q Consensus       236 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~  315 (478)
                                   ++|+.|++++|.  .. .++ .+..+++|+.|++++ +.++.+|. +..+.. +++|+.|++++|.+
T Consensus        93 -------------~~L~~L~L~~N~--l~-~l~-~~~~l~~L~~L~l~~-N~i~~~~~-~~~l~~-l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           93 -------------DTLEELWISYNQ--IA-SLS-GIEKLVNLRVLYMSN-NKITNWGE-IDKLAA-LDKLEDLLLAGNPL  152 (198)
T ss_dssp             -------------HHCSEEEEEEEE--CC-CHH-HHHHHHHSSEEEESE-EECCCHHH-HHHHTT-TTTCSEEEECSCHH
T ss_pred             -------------CcCCEEECcCCc--CC-cCC-ccccCCCCCEEECCC-CcCCchhH-HHHHhc-CCCCCEEEecCCcc
Confidence                         445555555542  11 122 344555666666665 44444331 002444 56666666666655


Q ss_pred             CCCCcC----------cccCCCCCCeEE
Q 047959          316 VEDPMP----------TLEELPHLEVLK  333 (478)
Q Consensus       316 ~~~~~~----------~l~~l~~L~~L~  333 (478)
                      .+..+.          .+..+++|+.|+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          153 YNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             ccccccccchHHHHHHHHHhCCCcEEEC
Confidence            433222          245566666665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.09  E-value=2.2e-09  Score=104.96  Aligned_cols=236  Identities=9%  Similarity=0.099  Sum_probs=129.1

Q ss_pred             CCceEeecCCCCCccchh-hhCCCCCcEEeCCCCcCcccc-hhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcc
Q 047959          158 YLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYIDHSP-EDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISAL  235 (478)
Q Consensus       158 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  235 (478)
                      +|+.+.+..+ ++.++.. +.+ .+|+.+.+.. .+..++ ..+..|++|+.++++.|... .++...-...+|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeC
Confidence            4555554433 4433322 222 2455555543 333333 22344555555555333222 222221113445555444


Q ss_pred             cCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeec
Q 047959          236 HPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTE  314 (478)
Q Consensus       236 ~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~  314 (478)
                      ..- ......|.++++|+.+.+..+-   ...-...+.. .+|+.+.+.  +.++.++..  .+.. +++|+.+.+.++.
T Consensus       212 ~~l~~I~~~aF~~~~~L~~l~l~~~l---~~I~~~aF~~-~~L~~i~lp--~~i~~I~~~--aF~~-c~~L~~l~l~~~~  282 (401)
T 4fdw_A          212 VTLKEIGSQAFLKTSQLKTIEIPENV---STIGQEAFRE-SGITTVKLP--NGVTNIASR--AFYY-CPELAEVTTYGST  282 (401)
T ss_dssp             TTCCEECTTTTTTCTTCCCEECCTTC---CEECTTTTTT-CCCSEEEEE--TTCCEECTT--TTTT-CTTCCEEEEESSC
T ss_pred             CchheehhhHhhCCCCCCEEecCCCc---cCcccccccc-CCccEEEeC--CCccEEChh--HhhC-CCCCCEEEeCCcc
Confidence            222 1223345566666666665431   1111123334 678888884  556666552  5556 8899999998876


Q ss_pred             CC-----CCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeC-CCcccccceeEEecCC
Q 047959          315 LV-----EDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCA  388 (478)
Q Consensus       315 ~~-----~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~~~~L~~L~l~~c~  388 (478)
                      ..     ......+.++++|+.+.|. +.+.. ..... +.++++|+.+.|..  +++.+... +..+ +|+.+.+.++.
T Consensus       283 ~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~-I~~~a-F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          283 FNDDPEAMIHPYCLEGCPKLARFEIP-ESIRI-LGQGL-LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             CCCCTTCEECTTTTTTCTTCCEECCC-TTCCE-ECTTT-TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSS
T ss_pred             ccCCcccEECHHHhhCCccCCeEEeC-CceEE-Ehhhh-hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCC
Confidence            53     2334567889999999998 33321 11112 67789999999964  56766543 3456 99999999885


Q ss_pred             CCCCCccccCCC-CCCCEEEEecCc
Q 047959          389 YLRKLPEEQWCI-KSLCKLELHWPQ  412 (478)
Q Consensus       389 ~l~~lp~~l~~l-~~L~~L~l~~c~  412 (478)
                      .....+..+.++ .+++.|++-...
T Consensus       357 ~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          357 PPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             CcccccccccCCCCCccEEEeCHHH
Confidence            433333445566 478999986633

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.04  E-value=3.5e-09  Score=103.47  Aligned_cols=242  Identities=10%  Similarity=0.085  Sum_probs=166.6

Q ss_pred             ccccCCCCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccchhhhcccc
Q 047959          127 ENFCKKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPEDIWMMQK  204 (478)
Q Consensus       127 ~~~~~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~  204 (478)
                      ...|..+ +|+.+.+..+ ++.++.. |.+ .+|+.+.+.. .++.++ ..+.+|.+|+.+++.++.+..+|.....+.+
T Consensus       129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~  204 (401)
T 4fdw_A          129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAG  204 (401)
T ss_dssp             TTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCC
T ss_pred             HhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecc
Confidence            3445555 6899998776 6666554 555 4799999986 677666 4578899999999999999999887777889


Q ss_pred             CcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEE
Q 047959          205 LMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLV  283 (478)
Q Consensus       205 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~  283 (478)
                      |+.+.+. +.....-...|..+++|+.+.+..+- ......|.+ .+|+.+.+...   ....-...+..+++|+.+.+.
T Consensus       205 L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~---i~~I~~~aF~~c~~L~~l~l~  279 (401)
T 4fdw_A          205 IEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG---VTNIASRAFYYCPELAEVTTY  279 (401)
T ss_dssp             CSEEECC-TTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT---CCEECTTTTTTCTTCCEEEEE
T ss_pred             cCEEEeC-CchheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCC---ccEEChhHhhCCCCCCEEEeC
Confidence            9999994 43433344568889999999887654 222334555 68999999653   222234567889999999998


Q ss_pred             ecCccc-----ccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCccccee
Q 047959          284 NEGKMR-----QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKIL  358 (478)
Q Consensus       284 ~~~~l~-----~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L  358 (478)
                      + +...     .++..  .+.. +++|+.+.+.+ .+.......+.++++|+.+.|..+ +.... ... +.++ +|+.+
T Consensus       280 ~-~~~~~~~~~~I~~~--aF~~-c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~-~~a-F~~~-~L~~l  350 (401)
T 4fdw_A          280 G-STFNDDPEAMIHPY--CLEG-CPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN-FSA-FNNT-GIKEV  350 (401)
T ss_dssp             S-SCCCCCTTCEECTT--TTTT-CTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC-TTS-SSSS-CCCEE
T ss_pred             C-ccccCCcccEECHH--HhhC-CccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc-HHh-CCCC-CCCEE
Confidence            6 4433     35542  4566 89999999984 355555567888999999999744 32111 111 6777 99999


Q ss_pred             EEecCCCCCceeeC-CCccc-ccceeEEecC
Q 047959          359 HLKSMLWLEEWTMG-AGAMP-KLESLILNPC  387 (478)
Q Consensus       359 ~L~~~~~l~~l~~~-~~~~~-~L~~L~l~~c  387 (478)
                      .+.++ .+..++.. +..++ +++.|.+...
T Consensus       351 ~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          351 KVEGT-TPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             EECCS-SCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             EEcCC-CCcccccccccCCCCCccEEEeCHH
Confidence            99884 44444322 23453 6778877654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.00  E-value=1.6e-10  Score=130.05  Aligned_cols=85  Identities=20%  Similarity=0.300  Sum_probs=75.1

Q ss_pred             eecccCCChhhHHHHHhHhcccCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHHccceeeeecCCCCcEeEEEe
Q 047959            3 QIFSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFIQVSKRRSGGTIKACYV   82 (478)
Q Consensus         3 ~klSY~~L~~~~k~cFl~~a~Fp~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~m   82 (478)
                      +++||+.||+++|+||+|||+||+++.|+++.++.+|.++       ++.++.++++|+++||++...   +|+...|+|
T Consensus       368 l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~  437 (1249)
T 3sfz_A          368 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR---NGKSFCYYL  437 (1249)
T ss_dssp             HHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE---SSSSEEEEC
T ss_pred             HHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec---CCCceEEEe
Confidence            5689999999999999999999999999999999999655       456899999999999999765   455567999


Q ss_pred             CHHHHHHHHHHhhhc
Q 047959           83 PSIAYTSLALMARKT   97 (478)
Q Consensus        83 hdli~dl~~~~~~~e   97 (478)
                      ||++|++++..++++
T Consensus       438 h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          438 HDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             CHHHHHHHHHHTGGG
T ss_pred             cHHHHHHHHhhhhHH
Confidence            999999999887654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.99  E-value=6.1e-10  Score=106.27  Aligned_cols=233  Identities=11%  Similarity=-0.021  Sum_probs=150.6

Q ss_pred             EeEEEecCCCCCcCCcc-CCC--------CCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccchh-hhcccc
Q 047959          136 LRVLNLGSAVLDQYPPG-LEN--------LFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPED-IWMMQK  204 (478)
Q Consensus       136 L~~L~L~~~~l~~lp~~-~~~--------l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~  204 (478)
                      ++.+.+..+.   +|+. |.+        +.+|+.|.+.. .++.+++ .+.+|.+|+.+++.++.+..++.. +..+.+
T Consensus        74 ~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~  149 (329)
T 3sb4_A           74 GKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVT  149 (329)
T ss_dssp             GCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTC
T ss_pred             cccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCc
Confidence            4555555553   3333 556        89999999988 7887775 478899999999999988777643 555666


Q ss_pred             CcEEEeeCCC----CCCCCCCCCCCCCCCc-EeCcccCC---CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCC
Q 047959          205 LMHLNFGSIT----LPAPPKNNSSPLKNLI-FISALHPS---SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHK  276 (478)
Q Consensus       205 L~~L~l~~~~----~~~~~~~~~~~l~~L~-~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~  276 (478)
                      +..+..+.+.    ...--...+..+.+|+ .+.+....   ......-....++..+.+.+.  ............+++
T Consensus       150 l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~  227 (329)
T 3sb4_A          150 AIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPN  227 (329)
T ss_dssp             EEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTT
T ss_pred             eEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee--ecHHHHHHHHHhcCC
Confidence            6666552210    0111122244455565 33322221   111111224567788888876  333333333335899


Q ss_pred             CCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCC-eEEEeeCcccCceeEEeCCCCCccc
Q 047959          277 LECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLE-VLKLKQNSYLERKLACVGCSSFPQL  355 (478)
Q Consensus       277 L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~~L  355 (478)
                      |+.+++.+ +.++.+|..  .+.. +++|+.+++.++ +.......+.++++|+ .+.+.+ .+.. ..... +.++++|
T Consensus       228 L~~l~L~~-n~i~~I~~~--aF~~-~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~a-F~~c~~L  299 (329)
T 3sb4_A          228 LVSLDISK-TNATTIPDF--TFAQ-KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGA-FMGCDNL  299 (329)
T ss_dssp             CCEEECTT-BCCCEECTT--TTTT-CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTT-TTTCTTE
T ss_pred             CeEEECCC-CCcceecHh--hhhC-CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE-Echhh-hhCCccC
Confidence            99999996 778888873  4666 999999999987 5555666889999999 999985 3322 11112 7889999


Q ss_pred             ceeEEecCCCCCceee-CCCcccccceeE
Q 047959          356 KILHLKSMLWLEEWTM-GAGAMPKLESLI  383 (478)
Q Consensus       356 ~~L~L~~~~~l~~l~~-~~~~~~~L~~L~  383 (478)
                      +.+++.. +.++.++. .+..+++|+.++
T Consensus       300 ~~l~l~~-n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          300 RYVLATG-DKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred             CEEEeCC-CccCccchhhhcCCcchhhhc
Confidence            9999976 57777765 346778888875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.96  E-value=2.1e-09  Score=91.93  Aligned_cols=101  Identities=16%  Similarity=0.148  Sum_probs=83.6

Q ss_pred             CCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCccc-chhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCccc
Q 047959          158 YLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHS-PEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALH  236 (478)
Q Consensus       158 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  236 (478)
                      ..+.++++++.++.+|..+.  .+|++|++++|.+..+ |..+..+++|++|++++|.+....+..+..+++|++|++.+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            56889999999999997764  8999999999999888 55688999999999988887755555578899999999988


Q ss_pred             CC-CCCcc-ccCCCCCCcEEEEEecC
Q 047959          237 PS-SCTPD-ILGRLPNVQTLRISGDL  260 (478)
Q Consensus       237 ~~-~~~~~-~l~~l~~L~~L~l~~~~  260 (478)
                      +. ...+. .+..+++|+.|++++|.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            88 44444 47888888888888874

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.95  E-value=2.4e-09  Score=91.87  Aligned_cols=101  Identities=17%  Similarity=0.150  Sum_probs=80.9

Q ss_pred             CCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCccc-chhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCccc
Q 047959          158 YLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHS-PEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALH  236 (478)
Q Consensus       158 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  236 (478)
                      .-+.++++++.+..+|..+.  .+|++|++++|.+..+ |..+..+++|++|++++|.+....+..+..+++|++|++.+
T Consensus        13 ~~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           13 DQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             CSSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            34789999999999998764  8999999999999888 55688999999999988877654444468888999999888


Q ss_pred             CC-CCCccc-cCCCCCCcEEEEEecC
Q 047959          237 PS-SCTPDI-LGRLPNVQTLRISGDL  260 (478)
Q Consensus       237 ~~-~~~~~~-l~~l~~L~~L~l~~~~  260 (478)
                      +. ...+.. +..+++|+.|++++|.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCC
Confidence            87 444443 7778888888888774

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=98.93  E-value=2.5e-10  Score=120.28  Aligned_cols=78  Identities=19%  Similarity=0.152  Sum_probs=67.9

Q ss_pred             eecccCCChhhH-HHHHhHhcccCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHHccceeeeecCCCCcEeEEE
Q 047959            3 QIFSVMELPFHL-KVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFIQVSKRRSGGTIKACY   81 (478)
Q Consensus         3 ~klSY~~L~~~~-k~cFl~~a~Fp~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~   81 (478)
                      +++||+.||+++ |+||+|||+||+++.|+++.++.+|+++|      ++.++.++++|+++||++..     +....|+
T Consensus       359 LelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d-----~~~~rYr  427 (1221)
T 1vt4_I          359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQ-----PKESTIS  427 (1221)
T ss_dssp             HHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBC-----SSSSEEB
T ss_pred             HHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEe-----CCCCEEE
Confidence            578999999998 99999999999999999999999999987      23588999999999999873     1224699


Q ss_pred             eCHHHHHHHH
Q 047959           82 VPSIAYTSLA   91 (478)
Q Consensus        82 mhdli~dl~~   91 (478)
                      |||++++++.
T Consensus       428 MHDLllELr~  437 (1221)
T 1vt4_I          428 IPSIYLELKV  437 (1221)
T ss_dssp             CCCHHHHHHH
T ss_pred             ehHHHHHHhc
Confidence            9999999663

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.79  E-value=1.9e-08  Score=96.65  Aligned_cols=99  Identities=19%  Similarity=0.102  Sum_probs=70.7

Q ss_pred             EEEecCC-CCCcCCccCCCCCCCceEeecC-CCCCccc-hhhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEeeCC
Q 047959          138 VLNLGSA-VLDQYPPGLENLFYLKYLKLNI-PSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFGSI  213 (478)
Q Consensus       138 ~L~L~~~-~l~~lp~~~~~l~~L~~L~l~~-~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~  213 (478)
                      .++.+++ .++.+|. +..+.+|++|+|++ |.+..+| ..++.+.+|++|+|++|.+..+|. .+.++++|++|++++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            3577777 6778888 88888888888885 7888666 457788888888888887777754 4677888888888777


Q ss_pred             CCCCCCCCCCCCCCCCcEeCcccCC
Q 047959          214 TLPAPPKNNSSPLKNLIFISALHPS  238 (478)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~l~~~~  238 (478)
                      .+....+..+..++ |+.|++.++.
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNP  114 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCC
Confidence            66543333344444 7777777665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.78  E-value=8.6e-11  Score=113.79  Aligned_cols=59  Identities=24%  Similarity=0.241  Sum_probs=26.1

Q ss_pred             CeEeEEEecCCCCCc-----CCccCC-CCCCCceEeecCCCCCc--cchhhhCCCCCcEEeCCCCcC
Q 047959          134 KHLRVLNLGSAVLDQ-----YPPGLE-NLFYLKYLKLNIPSLKC--LPSLLCTLLNLQTLEMPSSYI  192 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~-----lp~~~~-~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~l  192 (478)
                      +.|+.|+|++|.++.     +...+. ...+|+.|++++|.+..  +..-...+.+|++|++++|.+
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l  138 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL  138 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC
Confidence            445566666666541     111111 12455555555555541  111122234455555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.69  E-value=2.6e-10  Score=110.36  Aligned_cols=162  Identities=15%  Similarity=0.099  Sum_probs=92.8

Q ss_pred             CCCceEeecCCCCCc-----cchhhh-CCCCCcEEeCCCCcCccc--chhhhccccCcEEEeeCCCCCCCCCCCC-----
Q 047959          157 FYLKYLKLNIPSLKC-----LPSLLC-TLLNLQTLEMPSSYIDHS--PEDIWMMQKLMHLNFGSITLPAPPKNNS-----  223 (478)
Q Consensus       157 ~~L~~L~l~~~~i~~-----lp~~~~-~l~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~~~~~-----  223 (478)
                      ++|++|++++|.+..     +...+. ...+|++|++++|.+..-  ..-...+++|++|++++|.+.......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            467777777777662     111222 225777777777765432  1222345667777776665433211111     


Q ss_pred             CCCCCCcEeCcccCC------CCCccccCCCCCCcEEEEEecC--CcchhhHHHhccCCCCCCEEEEEecCcccc-----
Q 047959          224 SPLKNLIFISALHPS------SCTPDILGRLPNVQTLRISGDL--SYYHSGVSKSLCQLHKLECLKLVNEGKMRQ-----  290 (478)
Q Consensus       224 ~~l~~L~~L~l~~~~------~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~-----  290 (478)
                      ...++|++|++.+|.      ..+...+..+++|++|++++|.  ......+...+...++|+.|++++ +.++.     
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~-N~i~~~g~~~  230 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY-NGAGDTAALA  230 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS-SCCCHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC-CCCCHHHHHH
Confidence            234567777777776      1233344566777777777774  112234456667777888888887 55542     


Q ss_pred             cCccccccccCCCCceEEEEEeecCCCCCcCcc
Q 047959          291 LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTL  323 (478)
Q Consensus       291 ~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  323 (478)
                      ++.   .+.. .++|+.|+|++|.++......+
T Consensus       231 l~~---~L~~-~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          231 LAR---AARE-HPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             HHH---HHHH-CSSCCEEECTTSSCCHHHHHHH
T ss_pred             HHH---HHHh-CCCCCEEeccCCCCCHHHHHHH
Confidence            333   3445 6788888888888765433333

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.68  E-value=4.5e-07  Score=88.54  Aligned_cols=99  Identities=19%  Similarity=0.097  Sum_probs=52.6

Q ss_pred             CCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceee-CCCcccccc
Q 047959          302 PPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLE  380 (478)
Q Consensus       302 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~~~~L~  380 (478)
                      +..++.+......+   ....+..+.+|+.+.+.++ +. ...... +.++.+|+.+.|.+  .++.+.. .+..+.+|+
T Consensus       275 ~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~-~I~~~a-F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~  346 (394)
T 4fs7_A          275 CSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VK-FIGEEA-FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLS  346 (394)
T ss_dssp             CTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CC-EECTTT-TTTCTTCCEECCCT--TCCEECTTTTTTCTTCC
T ss_pred             ccccceeccCceee---ccccccccccccccccccc-cc-eechhh-hcCCCCCCEEEeCC--cccEEhHHhccCCCCCC
Confidence            45555554443322   1123455667777776532 11 111111 55667777777753  3555532 234567777


Q ss_pred             eeEEecCCCCCCCc-cccCCCCCCCEEEEec
Q 047959          381 SLILNPCAYLRKLP-EEQWCIKSLCKLELHW  410 (478)
Q Consensus       381 ~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~  410 (478)
                      .+.+..+  ++.++ ..+.+|++|+.+++..
T Consensus       347 ~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          347 NINFPLS--LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             EECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred             EEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence            7777543  44443 3566777777777754

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=98.67  E-value=1.2e-08  Score=105.33  Aligned_cols=82  Identities=20%  Similarity=0.286  Sum_probs=70.3

Q ss_pred             eecccCCChhhHHHHHhHhcccCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHHccceeeeecCCCCcEeEEEe
Q 047959            3 QIFSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFIQVSKRRSGGTIKACYV   82 (478)
Q Consensus         3 ~klSY~~L~~~~k~cFl~~a~Fp~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~m   82 (478)
                      ++.||+.||++.|.||++||+||+|+.|+.+.++.+|.++       .+.+..++++|+++||++...   +|....|+|
T Consensus       368 l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~  437 (591)
T 1z6t_A          368 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDR---NGKSFRYYL  437 (591)
T ss_dssp             HHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEE---ETTEEEEEC
T ss_pred             HHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEec---CCCccEEEE
Confidence            4679999999999999999999999999999999999653       344788999999999998654   344567999


Q ss_pred             CHHHHHHHHHHh
Q 047959           83 PSIAYTSLALMA   94 (478)
Q Consensus        83 hdli~dl~~~~~   94 (478)
                      |+++|++++...
T Consensus       438 H~lv~~~~~~~~  449 (591)
T 1z6t_A          438 HDLQVDFLTEKN  449 (591)
T ss_dssp             CHHHHHHHHHHT
T ss_pred             cHHHHHHHHhhh
Confidence            999999998773

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.66  E-value=3.2e-07  Score=89.60  Aligned_cols=284  Identities=10%  Similarity=0.041  Sum_probs=163.4

Q ss_pred             ccccCCCCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCC--------------
Q 047959          127 ENFCKKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSS--------------  190 (478)
Q Consensus       127 ~~~~~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~--------------  190 (478)
                      ...|..+.+|+.+.+.. .++.+.+. |.++.+|+.+++..+ ++.++. .+.++.+|+.+.+..+              
T Consensus        64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~  141 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDF  141 (394)
T ss_dssp             TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCC
T ss_pred             HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccc
Confidence            45566777777777753 35555444 667777777777543 444442 3455566665554332              


Q ss_pred             -------cCcccc-hhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCC
Q 047959          191 -------YIDHSP-EDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLS  261 (478)
Q Consensus       191 -------~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~  261 (478)
                             .+..+. ..+..+.+|+.+.+..+ ....-...+..+.+|+.+.+..+- ......+.++..|+.+.+.... 
T Consensus       142 ~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~-  219 (394)
T 4fs7_A          142 KEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSL-  219 (394)
T ss_dssp             SEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTC-
T ss_pred             cccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCc-
Confidence                   011111 23456677777777322 222223346667777777765443 2223345666666666554432 


Q ss_pred             cchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccC
Q 047959          262 YYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLE  341 (478)
Q Consensus       262 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  341 (478)
                         ..+........+|+.+.+.  ..+..+...  .+.. +.+|+.+.+..+. .......+..+..++.+......+..
T Consensus       220 ---~~i~~~~~~~~~l~~i~ip--~~~~~i~~~--~f~~-~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~  290 (394)
T 4fs7_A          220 ---YYLGDFALSKTGVKNIIIP--DSFTELGKS--VFYG-CTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPE  290 (394)
T ss_dssp             ---CEECTTTTTTCCCCEEEEC--TTCCEECSS--TTTT-CSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECT
T ss_pred             ---eEeehhhcccCCCceEEEC--CCceecccc--cccc-cccceeEEcCCCc-ceeeccccccccccceeccCceeecc
Confidence               1111222345677777775  334444431  3344 7888888887654 22334466777888888776444332


Q ss_pred             ceeEEeCCCCCcccceeEEecCCCCCceeeC-CCcccccceeEEecCCCCCCCc-cccCCCCCCCEEEEecCcHHHHHHH
Q 047959          342 RKLACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLP-EEQWCIKSLCKLELHWPQPELRQLL  419 (478)
Q Consensus       342 ~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~~~~~~~  419 (478)
                      ..     +..+.+|+.+.+.+  +++.+... +..+.+|+.+.+...  ++.++ ..+.+|++|+.+.+...       +
T Consensus       291 ~~-----F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-------l  354 (394)
T 4fs7_A          291 KT-----FYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-------L  354 (394)
T ss_dssp             TT-----TTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT-------C
T ss_pred             cc-----cccccccccccccc--ccceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-------c
Confidence            22     66788999999864  56666543 356789999999643  66664 36778999999988542       2


Q ss_pred             HhccCCcccceeeeeeeEEe
Q 047959          420 RAFEDMEWRKSQMVEASYIA  439 (478)
Q Consensus       420 ~~~~~~~~~~i~~lp~~~~~  439 (478)
                      ...+...+.....+..+.+.
T Consensus       355 ~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          355 RKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             CEECTTTBTTCTTCCEEEEE
T ss_pred             cEehHHHhhCCCCCCEEEEC
Confidence            22223345455566666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.59  E-value=5.2e-09  Score=100.49  Aligned_cols=12  Identities=8%  Similarity=-0.161  Sum_probs=6.1

Q ss_pred             CCCCCceEeecC
Q 047959          155 NLFYLKYLKLNI  166 (478)
Q Consensus       155 ~l~~L~~L~l~~  166 (478)
                      ++++|+.|.+..
T Consensus       137 ~l~~L~~L~l~~  148 (362)
T 2ra8_A          137 KFAHFEGLFWGD  148 (362)
T ss_dssp             HHTTCSEEEECC
T ss_pred             hcchhhheeecC
Confidence            445555555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.55  E-value=9.1e-08  Score=91.78  Aligned_cols=99  Identities=18%  Similarity=0.118  Sum_probs=84.4

Q ss_pred             ceEeecCC-CCCccchhhhCCCCCcEEeCCC-CcCcccc-hhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCccc
Q 047959          160 KYLKLNIP-SLKCLPSLLCTLLNLQTLEMPS-SYIDHSP-EDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALH  236 (478)
Q Consensus       160 ~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~-~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  236 (478)
                      ..++.+++ +++.+|. +..+.+|++|+|++ |.+..+| ..+..+++|++|++++|.+....|..|..+++|+.|++.+
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            45688887 8999999 99999999999996 8999998 4688999999999999988877777889999999999999


Q ss_pred             CC-CCCccc-cCCCCCCcEEEEEecC
Q 047959          237 PS-SCTPDI-LGRLPNVQTLRISGDL  260 (478)
Q Consensus       237 ~~-~~~~~~-l~~l~~L~~L~l~~~~  260 (478)
                      +. ...+.. +..++ |+.|++.+|.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNP  114 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCC
Confidence            98 555544 44444 9999999885

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.49  E-value=1.2e-08  Score=97.86  Aligned_cols=138  Identities=20%  Similarity=0.251  Sum_probs=87.6

Q ss_pred             HHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCccc--CCCCCCeEEEee--CcccCc
Q 047959          267 VSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLE--ELPHLEVLKLKQ--NSYLER  342 (478)
Q Consensus       267 l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~L~~--~~~~~~  342 (478)
                      +...+..+++|+.|.++++..+ .++.    + . .++|++|++..|.+.......+.  .+|+|+.|+|+.  +.+.+.
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~----~-~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~  236 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK----K-P-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD  236 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS----C-B-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc----c-c-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc
Confidence            4556667888999998874222 3442    2 3 68899999988876554444443  688999998863  222211


Q ss_pred             e------eEEeCCCCCcccceeEEecCCCCCcee---eCCCcccccceeEEecCCCCC----CCccccCCCCCCCEEEEe
Q 047959          343 K------LACVGCSSFPQLKILHLKSMLWLEEWT---MGAGAMPKLESLILNPCAYLR----KLPEEQWCIKSLCKLELH  409 (478)
Q Consensus       343 ~------~~~~~~~~~~~L~~L~L~~~~~l~~l~---~~~~~~~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~  409 (478)
                      .      .... ...+|+|++|.+.+|......+   .....+|+|+.|+++.|..-.    .++.++..+++|+.|+++
T Consensus       237 ~~~~~l~~~l~-~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~  315 (362)
T 2ra8_A          237 GDMNVFRPLFS-KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK  315 (362)
T ss_dssp             SCGGGTGGGSC-TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred             hhHHHHHHHHh-cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence            1      0111 2458999999998864322111   112468899999998765322    134455678999999998


Q ss_pred             cCc
Q 047959          410 WPQ  412 (478)
Q Consensus       410 ~c~  412 (478)
                      +|.
T Consensus       316 ~n~  318 (362)
T 2ra8_A          316 YNY  318 (362)
T ss_dssp             SBB
T ss_pred             CCc
Confidence            886

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.43  E-value=1.3e-07  Score=80.03  Aligned_cols=36  Identities=11%  Similarity=0.194  Sum_probs=20.1

Q ss_pred             CCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCc
Q 047959          303 PSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNS  338 (478)
Q Consensus       303 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~  338 (478)
                      ..|+.|++++|.++...+..+..+++|+.|+|++|.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence            356666666666555445555555555555555553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.39  E-value=7.3e-06  Score=79.89  Aligned_cols=269  Identities=10%  Similarity=0.062  Sum_probs=134.4

Q ss_pred             ccccCCCCeEeEEEecCCC---CCcCCcc-CCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccc-hhhh
Q 047959          127 ENFCKKFKHLRVLNLGSAV---LDQYPPG-LENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSP-EDIW  200 (478)
Q Consensus       127 ~~~~~~~~~L~~L~L~~~~---l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~i~  200 (478)
                      +..|..+.+|+.+.+..+.   ++.+... |..+.+|+.+.+..+ ++.++. .+..+.+|+.+.+... +..++ ..+.
T Consensus        80 ~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~  157 (394)
T 4gt6_A           80 SNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFS  157 (394)
T ss_dssp             TTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred             HHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeeccccee
Confidence            4445556666666655432   3334333 555555555554332 333332 3455566666666433 22232 2344


Q ss_pred             ccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhh-HH----------
Q 047959          201 MMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSG-VS----------  268 (478)
Q Consensus       201 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~-l~----------  268 (478)
                      .+.+|+.+.+..+ ....-...+. ..+|+.+.+.... ......+..+.++.............+. +.          
T Consensus       158 ~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (394)
T 4gt6_A          158 YCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYAL  235 (394)
T ss_dssp             TCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE
T ss_pred             cccccccccccce-eeEecccccc-ccceeEEEECCcccccccchhhhccccceecccccccccccceeecccccccccc
Confidence            5566666665222 1111111122 2345555544332 2222334555555555444331000000 00          


Q ss_pred             HhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeC
Q 047959          269 KSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVG  348 (478)
Q Consensus       269 ~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~  348 (478)
                      ........+..+.+.  +.+..+...  .+.. +.+|+.+.+.... .......+.++++|+.+.+. +.+.. ..... 
T Consensus       236 ~~~~~~~~~~~~~ip--~~v~~i~~~--aF~~-c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~-I~~~a-  306 (394)
T 4gt6_A          236 IRYPSQREDPAFKIP--NGVARIETH--AFDS-CAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITE-LPESV-  306 (394)
T ss_dssp             EECCTTCCCSEEECC--TTEEEECTT--TTTT-CSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCE-ECTTT-
T ss_pred             cccccccccceEEcC--CcceEcccc--eeee-cccccEEeccccc-ceecCcccccccccccccCC-Ccccc-cCcee-
Confidence            000011122222221  222222220  3444 7788888875543 22334466778889988886 22221 11112 


Q ss_pred             CCCCcccceeEEecCCCCCceeeC-CCcccccceeEEecCCCCCCCcc-ccCCCCCCCEEEEecCc
Q 047959          349 CSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLPE-EQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       349 ~~~~~~L~~L~L~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~  412 (478)
                      +.++.+|+.+.|..  +++.+... +..+.+|+.+.+...  ++.++. .+.+|++|+.+++.+..
T Consensus       307 F~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          307 FAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             ecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCce
Confidence            67788999999974  46666433 456889999999653  666654 67889999999998865

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.25  E-value=3e-07  Score=77.78  Aligned_cols=85  Identities=7%  Similarity=0.071  Sum_probs=66.8

Q ss_pred             CCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceee-CCCc----ccccceeEEecCCCCCCCc-cccCCC
Q 047959          327 PHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGA----MPKLESLILNPCAYLRKLP-EEQWCI  400 (478)
Q Consensus       327 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~----~~~L~~L~l~~c~~l~~lp-~~l~~l  400 (478)
                      ..|+.|++++|.+++..+..  +.++++|++|+|++|..++.... .+..    .++|+.|++++|+.+++-. ..+.++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~--L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDH--MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGG--GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             ceEeEEeCcCCCccHHHHHH--hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            47999999999988776654  67899999999999998884321 1122    4689999999999887521 346689


Q ss_pred             CCCCEEEEecCcH
Q 047959          401 KSLCKLELHWPQP  413 (478)
Q Consensus       401 ~~L~~L~l~~c~~  413 (478)
                      ++|+.|++++|+.
T Consensus       139 ~~L~~L~L~~c~~  151 (176)
T 3e4g_A          139 RNLKYLFLSDLPG  151 (176)
T ss_dssp             TTCCEEEEESCTT
T ss_pred             CCCCEEECCCCCC
Confidence            9999999999983

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.14  E-value=1.7e-05  Score=77.20  Aligned_cols=274  Identities=11%  Similarity=0.077  Sum_probs=160.9

Q ss_pred             CCCCCeeeec------------CccccCCCCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccc-hhhhCCCC
Q 047959          116 SKSDHLALIH------------CENFCKKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLP-SLLCTLLN  181 (478)
Q Consensus       116 ~~~~~lr~l~------------~~~~~~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~  181 (478)
                      ..|.+|+++.            ....|..+..|+.+.+..+ ++.++.. +..+.+|+.+.+..+ +..++ ..+..+.+
T Consensus        84 ~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~  161 (394)
T 4gt6_A           84 YNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYS  161 (394)
T ss_dssp             TTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             hCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceecccc
Confidence            5677777661            2455677777877766544 4445444 778899999999653 45444 35778899


Q ss_pred             CcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCc--------------cccC
Q 047959          182 LQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTP--------------DILG  246 (478)
Q Consensus       182 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~--------------~~l~  246 (478)
                      |+.+.+..+ +..+........+|+.+.+..+ ........+..+.++......... ....              ....
T Consensus       162 L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (394)
T 4gt6_A          162 LHTVTLPDS-VTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYP  239 (394)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECC
T ss_pred             cccccccce-eeEeccccccccceeEEEECCc-ccccccchhhhccccceecccccccccccceeecccccccccccccc
Confidence            999999765 5555554445678999998433 332333456677777766543332 0000              0111


Q ss_pred             CCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCC
Q 047959          247 RLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEEL  326 (478)
Q Consensus       247 ~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l  326 (478)
                      ....+..+.+-..   ....-...+..+.+|+.+.+..  .+..+...  .+.. +++|+.+.+.. .+.......+.++
T Consensus       240 ~~~~~~~~~ip~~---v~~i~~~aF~~c~~L~~i~lp~--~~~~I~~~--aF~~-c~~L~~i~l~~-~i~~I~~~aF~~c  310 (394)
T 4gt6_A          240 SQREDPAFKIPNG---VARIETHAFDSCAYLASVKMPD--SVVSIGTG--AFMN-CPALQDIEFSS-RITELPESVFAGC  310 (394)
T ss_dssp             TTCCCSEEECCTT---EEEECTTTTTTCSSCCEEECCT--TCCEECTT--TTTT-CTTCCEEECCT-TCCEECTTTTTTC
T ss_pred             cccccceEEcCCc---ceEcccceeeecccccEEeccc--ccceecCc--cccc-ccccccccCCC-cccccCceeecCC
Confidence            2222333332211   1111124567888899988853  33444441  4455 88999998853 3333444577889


Q ss_pred             CCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceee-CCCcccccceeEEecCCCCCCCccccCCCCCCCE
Q 047959          327 PHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCK  405 (478)
Q Consensus       327 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~  405 (478)
                      .+|+.+.|..+ +. ...... +.++.+|+.+.|..  +++.+.. .+..+++|+.+++.++...  . ..+..+.+|+.
T Consensus       311 ~~L~~i~lp~~-v~-~I~~~a-F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~  382 (394)
T 4gt6_A          311 ISLKSIDIPEG-IT-QILDDA-FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRSQ--W-NAISTDSGLQN  382 (394)
T ss_dssp             TTCCEEECCTT-CC-EECTTT-TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHHH--H-HTCBCCCCC--
T ss_pred             CCcCEEEeCCc-cc-EehHhH-hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCceee--h-hhhhccCCCCE
Confidence            99999999743 21 111112 77889999999964  4666543 3467889999999875321  1 34556788888


Q ss_pred             EEEec
Q 047959          406 LELHW  410 (478)
Q Consensus       406 L~l~~  410 (478)
                      +.+..
T Consensus       383 i~i~~  387 (394)
T 4gt6_A          383 LPVAP  387 (394)
T ss_dssp             -----
T ss_pred             EEeCC
Confidence            87754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.13  E-value=3.5e-07  Score=79.13  Aligned_cols=113  Identities=16%  Similarity=0.143  Sum_probs=70.9

Q ss_pred             cCCCCeEeEEEecCC-CCC-----cCCccCCCCCCCceEeecCCCCC-----ccchhhhCCCCCcEEeCCCCcCcc----
Q 047959          130 CKKFKHLRVLNLGSA-VLD-----QYPPGLENLFYLKYLKLNIPSLK-----CLPSLLCTLLNLQTLEMPSSYIDH----  194 (478)
Q Consensus       130 ~~~~~~L~~L~L~~~-~l~-----~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~l~~----  194 (478)
                      ....+.|+.|+|++| .+.     .+...+...++|++|++++|.+.     .+...+...++|++|++++|.+..    
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            355677888888888 765     34455666778888888888776     344556666778888888887644    


Q ss_pred             -cchhhhccccCcEEEe--eCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecC
Q 047959          195 -SPEDIWMMQKLMHLNF--GSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDL  260 (478)
Q Consensus       195 -lp~~i~~l~~L~~L~l--~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~  260 (478)
                       +...+...++|++|++  ++|.+.....                  ..+...+...++|++|++++|.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~------------------~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVE------------------MEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHH------------------HHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHH------------------HHHHHHHHhCCCcCEEeccCCC
Confidence             3455556667777777  4443322100                  1122334455677777777763

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.07  E-value=7.3e-05  Score=72.30  Aligned_cols=262  Identities=12%  Similarity=0.097  Sum_probs=118.2

Q ss_pred             ccccCCCCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccC
Q 047959          127 ENFCKKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKL  205 (478)
Q Consensus       127 ~~~~~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L  205 (478)
                      +..|..+.+|+.+++..+ ++.+... |.++ +|+.+.+.. .++.++.......+|+.+.+..+ +..+........+|
T Consensus        62 ~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~~-~~~i~~~~F~~~~l  137 (379)
T 4h09_A           62 EANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFEFPGA-TTEIGNYIFYNSSV  137 (379)
T ss_dssp             TTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCCC
T ss_pred             HHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccccCCCc-ccccccccccccee
Confidence            455677777777777543 5555444 5554 566665543 35555544333346777777554 33333322222345


Q ss_pred             cEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC--------------CCCccccCCCCCCcEEEEEecCCcchhhHHHhc
Q 047959          206 MHLNFGSITLPAPPKNNSSPLKNLIFISALHPS--------------SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSL  271 (478)
Q Consensus       206 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l  271 (478)
                      +.+.+. ......-...+..+.+++.+......              ......+.....+..+.+...   ........+
T Consensus       138 ~~~~~~-~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~f  213 (379)
T 4h09_A          138 KRIVIP-KSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST---VKTVTAYGF  213 (379)
T ss_dssp             CEEEEC-TTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT---CCEECTTTT
T ss_pred             eeeecc-ceeeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccc---eeEEeeccc
Confidence            555552 22222222334445555554433222              011112223333333332221   111111223


Q ss_pred             cCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCC
Q 047959          272 CQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSS  351 (478)
Q Consensus       272 ~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~  351 (478)
                      ..+.+|+.+.+.  ..+..++..  .+.. +.+|+.+.+..+ ++......+.++.+|+.+.+..+ +.. ..... +.+
T Consensus       214 ~~~~~l~~i~~~--~~~~~i~~~--~f~~-~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~-i~~~a-F~~  284 (379)
T 4h09_A          214 SYGKNLKKITIT--SGVTTLGDG--AFYG-MKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKT-VPYLL-CSG  284 (379)
T ss_dssp             TTCSSCSEEECC--TTCCEECTT--TTTT-CSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSE-ECTTT-TTT
T ss_pred             ccccccceeeec--cceeEEccc--cccC-CccceEEEcCCC-ccEeCccccceeehhcccccccc-cee-ccccc-ccc
Confidence            344555555553  223333321  2333 556666666443 22222334555666666666422 111 10111 455


Q ss_pred             CcccceeEEecCCCCCceeeC-CCcccccceeEEecCCCCCCCcc-ccCCCCCCCEEEE
Q 047959          352 FPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLPE-EQWCIKSLCKLEL  408 (478)
Q Consensus       352 ~~~L~~L~L~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l  408 (478)
                      +++|+.+.+.+ ..++.++.. +..+.+|+.+.+...  ++.++. .+.+|++|+.+.+
T Consensus       285 c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          285 CSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             CTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred             ccccccccccc-cccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence            66666666654 344444322 244566666666432  444432 4456666666655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.91  E-value=1.6e-06  Score=74.82  Aligned_cols=121  Identities=14%  Similarity=0.024  Sum_probs=80.0

Q ss_pred             CccCCCCCCCceEeecCC-CCC-----ccchhhhCCCCCcEEeCCCCcCcc-----cchhhhccccCcEEEeeCCCCCCC
Q 047959          150 PPGLENLFYLKYLKLNIP-SLK-----CLPSLLCTLLNLQTLEMPSSYIDH-----SPEDIWMMQKLMHLNFGSITLPAP  218 (478)
Q Consensus       150 p~~~~~l~~L~~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~  218 (478)
                      ...+...++|+.|++++| .+.     .+...+...++|++|++++|.+..     +...+...++|++|++++|.+...
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            334566788999999888 776     355566777889999999887743     344555667788888866643321


Q ss_pred             CCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEE--EecC--CcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959          219 PKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRI--SGDL--SYYHSGVSKSLCQLHKLECLKLVNEGKMR  289 (478)
Q Consensus       219 ~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l--~~~~--~~~~~~l~~~l~~~~~L~~L~l~~~~~l~  289 (478)
                      -.                  ..+...+...++|++|++  ++|.  ......+...+...++|++|++++ +.+.
T Consensus       109 g~------------------~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~-n~i~  164 (185)
T 1io0_A          109 GI------------------LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF-TQQG  164 (185)
T ss_dssp             HH------------------HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC-SSHH
T ss_pred             HH------------------HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC-CCCC
Confidence            00                  122344556677888888  5563  122334667777889999999987 5543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.78  E-value=1.2e-05  Score=73.10  Aligned_cols=60  Identities=23%  Similarity=0.194  Sum_probs=29.6

Q ss_pred             CCCeEeEEEecCCCCCcC---CccCCCCCCCceEeecCCCCCccchhhhCCC--CCcEEeCCCCcC
Q 047959          132 KFKHLRVLNLGSAVLDQY---PPGLENLFYLKYLKLNIPSLKCLPSLLCTLL--NLQTLEMPSSYI  192 (478)
Q Consensus       132 ~~~~L~~L~L~~~~l~~l---p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~--~L~~L~l~~~~l  192 (478)
                      +++.|+.|+|++|.++.+   |..+..+++|++|+|++|.+..+ ..+..+.  +|++|++++|.+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl  232 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSL  232 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTT
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcC
Confidence            345555555555555432   23334555555555555555543 1222333  555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.65  E-value=3.6e-05  Score=70.01  Aligned_cols=78  Identities=19%  Similarity=0.199  Sum_probs=50.6

Q ss_pred             CCCCCceEeecCCCCCcc---chhhhCCCCCcEEeCCCCcCcccchhhhccc--cCcEEEeeCCCCCCCCCC-------C
Q 047959          155 NLFYLKYLKLNIPSLKCL---PSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQ--KLMHLNFGSITLPAPPKN-------N  222 (478)
Q Consensus       155 ~l~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~~~-------~  222 (478)
                      ++++|+.|+|++|.+..+   |..+..+++|++|+|++|.+..+. .+..+.  +|++|++++|.+...+|.       .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            567788888888877743   355667788888888888777663 344444  778888877765544432       1


Q ss_pred             CCCCCCCcEeC
Q 047959          223 SSPLKNLIFIS  233 (478)
Q Consensus       223 ~~~l~~L~~L~  233 (478)
                      +..+++|+.|+
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            34456666665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.56  E-value=0.0012  Score=63.55  Aligned_cols=264  Identities=9%  Similarity=0.086  Sum_probs=150.9

Q ss_pred             ccCCCCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccchh-hhCCCCCcEEeCCCCcCcccchhhhccccCc
Q 047959          129 FCKKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYIDHSPEDIWMMQKLM  206 (478)
Q Consensus       129 ~~~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~  206 (478)
                      ++....+|+.+.+.. .++.+++. |.++.+|+.+.+..+ ++.++.. +.++ +|+.+.+..+ +..++.......+|+
T Consensus        41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~  116 (379)
T 4h09_A           41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLD  116 (379)
T ss_dssp             TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCS
T ss_pred             ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCcc
Confidence            445556677777754 36666655 888999999999653 6766644 4454 6777777543 556655544455888


Q ss_pred             EEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcc----------hhhHHHhccCCC
Q 047959          207 HLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYY----------HSGVSKSLCQLH  275 (478)
Q Consensus       207 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~----------~~~l~~~l~~~~  275 (478)
                      .+.+..+ ....-...+.. .+|+.+.+...- ......+..+.+++...+.......          .......+....
T Consensus       117 ~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (379)
T 4h09_A          117 DFEFPGA-TTEIGNYIFYN-SSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAK  194 (379)
T ss_dssp             EEECCTT-CCEECTTTTTT-CCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTC
T ss_pred             cccCCCc-ccccccccccc-ceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceeccccccc
Confidence            8888433 22111122333 245555444332 2223346677778777776542000          001111222334


Q ss_pred             CCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCccc
Q 047959          276 KLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQL  355 (478)
Q Consensus       276 ~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L  355 (478)
                      .+..+.+..  ....+...  .+.. ..+|+.+.+..+ +.......+..+..|+.+.+..+ +.. ..... +..+.+|
T Consensus       195 ~~~~~~~~~--~~~~i~~~--~f~~-~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~-I~~~a-F~~~~~l  265 (379)
T 4h09_A          195 TGTEFTIPS--TVKTVTAY--GFSY-GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTS-IGSFL-LQNCTAL  265 (379)
T ss_dssp             CCSEEECCT--TCCEECTT--TTTT-CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCE-ECTTT-TTTCTTC
T ss_pred             ccccccccc--ceeEEeec--cccc-ccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccE-eCccc-cceeehh
Confidence            444444332  22222210  2334 677887777544 22233445677889999998743 211 11111 6678889


Q ss_pred             ceeEEecCCCCCceeeC-CCcccccceeEEecCCCCCCCc-cccCCCCCCCEEEEec
Q 047959          356 KILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLP-EEQWCIKSLCKLELHW  410 (478)
Q Consensus       356 ~~L~L~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~  410 (478)
                      +.+.+..  .++.++.. ...+++|+.+.+.++. ++.++ ..+.+|.+|+.+.+..
T Consensus       266 ~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          266 KTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             CEEEECC--CCSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred             ccccccc--cceeccccccccccccccccccccc-cceehhhhhcCCCCCCEEEcCc
Confidence            9999864  56666543 3578999999997653 55554 4678899999999853

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.45  E-value=0.028  Score=44.79  Aligned_cols=51  Identities=24%  Similarity=0.275  Sum_probs=32.1

Q ss_pred             EEEecCCCCC--cCCccCCCCCCCceEeecCCCCCccchh-hhCCCCCcEEeCCCC
Q 047959          138 VLNLGSAVLD--QYPPGLENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSS  190 (478)
Q Consensus       138 ~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~  190 (478)
                      +++-++..++  .+|..+.  .+|++|+|++|.|+.+|.. +..+++|++|+|.+|
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            5566666666  6665432  2567777777777766643 455666777777666

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.36  E-value=0.0043  Score=53.23  Aligned_cols=62  Identities=16%  Similarity=0.192  Sum_probs=32.6

Q ss_pred             CCCCeEeEEEecCC-CCC-----cCCccCCCCCCCceEeecCCCCC-----ccchhhhCCCCCcEEeCCCCcC
Q 047959          131 KKFKHLRVLNLGSA-VLD-----QYPPGLENLFYLKYLKLNIPSLK-----CLPSLLCTLLNLQTLEMPSSYI  192 (478)
Q Consensus       131 ~~~~~L~~L~L~~~-~l~-----~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~l  192 (478)
                      ..-+.|+.|+|+++ .+.     .+-+.+..-..|+.|+|++|.+.     .+...+..-+.|++|+|++|.|
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I  110 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL  110 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence            33455666666664 443     23333444456666666666555     3333344445566666666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.19  E-value=0.013  Score=50.31  Aligned_cols=107  Identities=16%  Similarity=0.053  Sum_probs=67.8

Q ss_pred             CCCCCCCceEeecCC-CCC-----ccchhhhCCCCCcEEeCCCCcCc-----ccchhhhccccCcEEEeeCCCCCC----
Q 047959          153 LENLFYLKYLKLNIP-SLK-----CLPSLLCTLLNLQTLEMPSSYID-----HSPEDIWMMQKLMHLNFGSITLPA----  217 (478)
Q Consensus       153 ~~~l~~L~~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~----  217 (478)
                      +.+-+.|+.|+|+++ .|.     .+...+..-..|+.|+|++|.+.     .+.+.+..-+.|++|+++.|.+..    
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            445568888999875 665     35556666678999999988773     444556666889999998887654    


Q ss_pred             CCCCCCCCCCCCcEeCcccCCC---------CCccccCCCCCCcEEEEEec
Q 047959          218 PPKNNSSPLKNLIFISALHPSS---------CTPDILGRLPNVQTLRISGD  259 (478)
Q Consensus       218 ~~~~~~~~l~~L~~L~l~~~~~---------~~~~~l~~l~~L~~L~l~~~  259 (478)
                      .+-..+..-+.|++|++.++..         .+...+..-+.|++|+++.+
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            2222345556788888765321         12233444455566655544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.10  E-value=0.031  Score=44.47  Aligned_cols=53  Identities=13%  Similarity=0.229  Sum_probs=43.3

Q ss_pred             ceEeecCCCCC--ccchhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEeeCCC
Q 047959          160 KYLKLNIPSLK--CLPSLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNFGSIT  214 (478)
Q Consensus       160 ~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~  214 (478)
                      ..++.++++++  .+|..+.  .+|++|+|++|.|..+|.+ +..+++|+.|++++|.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            46788888888  8886543  4799999999999999865 5678999999997774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	478
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 39/272 (14%), Positives = 93/272 (34%), Gaps = 37/272 (13%)

Query: 134 KHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSY 191
               +L+L +  + +   G  +NL  L  L L    +  + P     L+ L+ L +  + 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 192 IDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNV 251
           +   PE +    + + ++   IT                             +   L  +
Sbjct: 91  LKELPEKMPKTLQELRVHENEIT------------------------KVRKSVFNGLNQM 126

Query: 252 QTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLS 311
             + +  +        + +   + KL  +++ +      ++ +       PPSLT+L L 
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD----TNITTIPQG---LPPSLTELHLD 179

Query: 312 NTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTM 371
             ++ +    +L+ L +L    L  +      +     ++ P L+ LHL +   L +   
Sbjct: 180 GNKITKVDAASLKGLNNLAK--LGLSFNSISAVDNGSLANTPHLRELHL-NNNKLVKVPG 236

Query: 372 GAGAMPKLESLILNPCAYLRKLPEEQWCIKSL 403
           G      ++ + L+    +  +    +C    
Sbjct: 237 GLADHKYIQVVYLHNN-NISAIGSNDFCPPGY 267

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 43/213 (20%), Positives = 83/213 (38%), Gaps = 17/213 (7%)

Query: 125 HCENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQT 184
              +   K  +L  L   +  +    P    L  L  L LN   LK + +L  +L NL  
Sbjct: 188 SDISVLAKLTNLESLIATNNQISDITPL-GILTNLDELSLNGNQLKDIGTL-ASLTNLTD 245

Query: 185 LEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDI 244
           L++ ++ I +    +  + KL  L  G+  +     +N SPL  L  ++ L  +    + 
Sbjct: 246 LDLANNQISNLAP-LSGLTKLTELKLGANQI-----SNISPLAGLTALTNLELNENQLED 299

Query: 245 LGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPS 304
           +  + N++ L     L + +      +  L KL+ L   N     ++S   +S      +
Sbjct: 300 ISPISNLKNLTYL-TLYFNNISDISPVSSLTKLQRLFFAN----NKVS--DVSSLANLTN 352

Query: 305 LTQLSLSNTELVEDPMPTLEELPHLEVLKLKQN 337
           +  LS  + ++ +  +  L  L  +  L L   
Sbjct: 353 INWLSAGHNQISD--LTPLANLTRITQLGLNDQ 383

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	478
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.86
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.85
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.83
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.83
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.79
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.76
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.76
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.75
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.74
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.61
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.58
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.37
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.31
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.3
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.22
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.21
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.16
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.1
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.07
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.05
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.04
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.98
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.76
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.74
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.7
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.65
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.21
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.96
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.5
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.48

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=2.3e-21  Score=187.66  Aligned_cols=167  Identities=22%  Similarity=0.266  Sum_probs=77.0

Q ss_pred             CCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCc
Q 047959          226 LKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSL  305 (478)
Q Consensus       226 l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L  305 (478)
                      +++++.+.+..+.-........+++|++|+++++.  .. .+ ..+..+++|+.|++++ +.++.++    .+.. +++|
T Consensus       196 l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~--l~-~~-~~l~~l~~L~~L~l~~-n~l~~~~----~~~~-~~~L  265 (384)
T d2omza2         196 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQ--LK-DI-GTLASLTNLTDLDLAN-NQISNLA----PLSG-LTKL  265 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC--CC-CC-GGGGGCTTCSEEECCS-SCCCCCG----GGTT-CTTC
T ss_pred             ccccceeeccCCccCCCCcccccCCCCEEECCCCC--CC-Cc-chhhcccccchhcccc-CccCCCC----cccc-cccC
Confidence            44455555544441111223445666666666652  11 11 2345556666666665 4455554    2344 5666


Q ss_pred             eEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEe
Q 047959          306 TQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILN  385 (478)
Q Consensus       306 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~  385 (478)
                      +.|+++++.+.+  ...+..++.++.+.+..|.+.+..   . ...+++++.|+++++ .++.++. ...+|+|++|+++
T Consensus       266 ~~L~l~~~~l~~--~~~~~~~~~l~~l~~~~n~l~~~~---~-~~~~~~l~~L~ls~n-~l~~l~~-l~~l~~L~~L~L~  337 (384)
T d2omza2         266 TELKLGANQISN--ISPLAGLTALTNLELNENQLEDIS---P-ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFA  337 (384)
T ss_dssp             SEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCSCCG---G-GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECC
T ss_pred             CEeeccCcccCC--CCcccccccccccccccccccccc---c-cchhcccCeEECCCC-CCCCCcc-cccCCCCCEEECC
Confidence            666666665432  123444445555555444443211   0 233444555555442 3333321 3444555555555


Q ss_pred             cCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          386 PCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       386 ~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      +| .++.++ .+.++++|+.|++++|.
T Consensus       338 ~n-~l~~l~-~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         338 NN-KVSDVS-SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             SS-CCCCCG-GGGGCTTCCEEECCSSC
T ss_pred             CC-CCCCCh-hHcCCCCCCEEECCCCc
Confidence            44 233333 24444555555554443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.85  E-value=1.4e-22  Score=190.82  Aligned_cols=248  Identities=19%  Similarity=0.217  Sum_probs=191.0

Q ss_pred             CeEeEEEecCCCCC---cCCccCCCCCCCceEeecC-CCCC-ccchhhhCCCCCcEEeCCCCcCccc-chhhhccccCcE
Q 047959          134 KHLRVLNLGSAVLD---QYPPGLENLFYLKYLKLNI-PSLK-CLPSLLCTLLNLQTLEMPSSYIDHS-PEDIWMMQKLMH  207 (478)
Q Consensus       134 ~~L~~L~L~~~~l~---~lp~~~~~l~~L~~L~l~~-~~i~-~lp~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~  207 (478)
                      .+++.|+|+++.++   .+|+.++++++|++|++++ |.+. .+|..++++++|++|++++|++..+ |..+..+.+|++
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            35889999999876   6889999999999999986 6777 8999999999999999999988765 456788999999


Q ss_pred             EEeeCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCC-cEEEEEecCCcchhhHHHhccCCCCCCEEEEEe
Q 047959          208 LNFGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNV-QTLRISGDLSYYHSGVSKSLCQLHKLECLKLVN  284 (478)
Q Consensus       208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L-~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~  284 (478)
                      ++++.|.....+|..+.++++|+.+++.++.  +..+..+..+..+ +.+.++.+  ...+..+..+..+.. ..+++..
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n--~l~~~~~~~~~~l~~-~~l~l~~  206 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN--RLTGKIPPTFANLNL-AFVDLSR  206 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS--EEEEECCGGGGGCCC-SEEECCS
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccc--ccccccccccccccc-ccccccc
Confidence            9998888888888889999999999988887  5677777777776 67777776  344444555555543 3577766


Q ss_pred             cCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCC
Q 047959          285 EGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSML  364 (478)
Q Consensus       285 ~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  364 (478)
                      +.....+|.   .+.. +++|+.++++++.+.+. ++.++.+++|+.|+|++|.+.+..+..  +..+++|++|+|+++ 
T Consensus       207 ~~~~~~~~~---~~~~-~~~l~~l~~~~~~l~~~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~--l~~L~~L~~L~Ls~N-  278 (313)
T d1ogqa_         207 NMLEGDASV---LFGS-DKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQG--LTQLKFLHSLNVSFN-  278 (313)
T ss_dssp             SEEEECCGG---GCCT-TSCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECCCGG--GGGCTTCCEEECCSS-
T ss_pred             ccccccccc---cccc-ccccccccccccccccc-ccccccccccccccCccCeecccCChH--HhCCCCCCEEECcCC-
Confidence            444445666   6666 78888888888887554 456777888888888888887665543  677888888888884 


Q ss_pred             CCC-ceeeCCCcccccceeEEecCCCCCCC
Q 047959          365 WLE-EWTMGAGAMPKLESLILNPCAYLRKL  393 (478)
Q Consensus       365 ~l~-~l~~~~~~~~~L~~L~l~~c~~l~~l  393 (478)
                      .++ .+| ..+.+++|+.+++++|+.+...
T Consensus       279 ~l~g~iP-~~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         279 NLCGEIP-QGGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             EEEEECC-CSTTGGGSCGGGTCSSSEEEST
T ss_pred             cccccCC-CcccCCCCCHHHhCCCccccCC
Confidence            555 565 3567888888888888765543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=3.1e-20  Score=173.97  Aligned_cols=261  Identities=18%  Similarity=0.194  Sum_probs=194.8

Q ss_pred             EeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCccc-chhhhccccCcEEEeeCC
Q 047959          136 LRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHS-PEDIWMMQKLMHLNFGSI  213 (478)
Q Consensus       136 L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~  213 (478)
                      .+.++=++..++.+|..+.  +++++|++++|.|+.+|+ ++.++++|++|++++|.+..+ |..+.++++|++|++++|
T Consensus        12 ~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            4566666667788887664  478888888888888875 577888888888888877777 455778888888888666


Q ss_pred             CCCCCCCCCCCCCCCCcEeCcccCC-CC-CccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc
Q 047959          214 TLPAPPKNNSSPLKNLIFISALHPS-SC-TPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL  291 (478)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~  291 (478)
                      .+. .+|..+  ...+..|....+. .. ....+.....+..+....+...........+..+++|+.+++++ +.+..+
T Consensus        90 ~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~-n~l~~l  165 (305)
T d1xkua_          90 QLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-TNITTI  165 (305)
T ss_dssp             CCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS-SCCCSC
T ss_pred             ccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcccccc-CCcccc
Confidence            544 344432  3466777766665 22 23335666777777777664333444455677888999999987 677777


Q ss_pred             CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceee
Q 047959          292 SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTM  371 (478)
Q Consensus       292 p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~  371 (478)
                      |.   .  . +++|+.|++++|..+......+..++.+++|++++|.+.+.....  +.++++|++|+|+++ .++.+|.
T Consensus       166 ~~---~--~-~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~--~~~l~~L~~L~L~~N-~L~~lp~  236 (305)
T d1xkua_         166 PQ---G--L-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS--LANTPHLRELHLNNN-KLVKVPG  236 (305)
T ss_dssp             CS---S--C-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT--GGGSTTCCEEECCSS-CCSSCCT
T ss_pred             Cc---c--c-CCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccc--ccccccceeeecccc-ccccccc
Confidence            76   3  3 689999999999887777778899999999999988876544332  577899999999995 7888888


Q ss_pred             CCCcccccceeEEecCCCCCCCcc-------ccCCCCCCCEEEEecCc
Q 047959          372 GAGAMPKLESLILNPCAYLRKLPE-------EQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       372 ~~~~~~~L~~L~l~~c~~l~~lp~-------~l~~l~~L~~L~l~~c~  412 (478)
                      .+..+++|+.|++++|. ++.++.       .....++|+.|+++++|
T Consensus       237 ~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         237 GLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             TTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccccccCCCEEECCCCc-cCccChhhccCcchhcccCCCCEEECCCCc
Confidence            88899999999999985 666643       23457899999999988

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.83  E-value=5e-22  Score=187.07  Aligned_cols=243  Identities=16%  Similarity=0.171  Sum_probs=202.6

Q ss_pred             CCCceEeecCCCCC---ccchhhhCCCCCcEEeCCC-CcC-cccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcE
Q 047959          157 FYLKYLKLNIPSLK---CLPSLLCTLLNLQTLEMPS-SYI-DHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIF  231 (478)
Q Consensus       157 ~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~-~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  231 (478)
                      .+++.|+|+++.+.   .+|+.+++|++|++|++++ |.+ +.+|..++++++|++|++++|.+....+..+..+.+|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            47999999999887   6899999999999999997 455 489999999999999999999888777878889999999


Q ss_pred             eCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCC-CEEEEEecCccc-ccCccccccccCCCCceE
Q 047959          232 ISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKL-ECLKLVNEGKMR-QLSRMILSEYKFPPSLTQ  307 (478)
Q Consensus       232 L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L-~~L~l~~~~~l~-~~p~~~~~~~~~~~~L~~  307 (478)
                      +++..+.  ...+..++++++|+.++++++  ...+.++..+..+.++ +.+.++. +.+. ..|.   .+.. + .+..
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n--~l~~~ip~~~~~l~~l~~~l~~~~-n~l~~~~~~---~~~~-l-~~~~  201 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGN--RISGAIPDSYGSFSKLFTSMTISR-NRLTGKIPP---TFAN-L-NLAF  201 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSS--CCEEECCGGGGCCCTTCCEEECCS-SEEEEECCG---GGGG-C-CCSE
T ss_pred             cccccccccccCchhhccCcccceeecccc--cccccccccccccccccccccccc-ccccccccc---cccc-c-cccc
Confidence            9999887  777889999999999999998  5666777888888776 6777776 6666 3454   5555 4 4456


Q ss_pred             EEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCC-ceeeCCCcccccceeEEec
Q 047959          308 LSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLE-EWTMGAGAMPKLESLILNP  386 (478)
Q Consensus       308 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-~l~~~~~~~~~L~~L~l~~  386 (478)
                      +++.++...+..+..++.+++++.+++.++.+.+..+.   +..+++|+.|+++++ .++ .+|..++.+++|+.|++++
T Consensus       202 l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~---~~~~~~L~~L~Ls~N-~l~g~iP~~l~~L~~L~~L~Ls~  277 (313)
T d1ogqa_         202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---VGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---CCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCS
T ss_pred             cccccccccccccccccccccccccccccccccccccc---cccccccccccCccC-eecccCChHHhCCCCCCEEECcC
Confidence            88888887788888889999999999998888765432   677899999999985 565 8888899999999999999


Q ss_pred             CCCCCCCccccCCCCCCCEEEEecCc
Q 047959          387 CAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       387 c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      |.....+|. ..++++|+.+++.+++
T Consensus       278 N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         278 NNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             SEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             CcccccCCC-cccCCCCCHHHhCCCc
Confidence            976667886 5678899888888765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=2.7e-19  Score=167.49  Aligned_cols=241  Identities=16%  Similarity=0.169  Sum_probs=187.9

Q ss_pred             CeEeEEEecCCCCCcCCc-cCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEee
Q 047959          134 KHLRVLNLGSAVLDQYPP-GLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFG  211 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~  211 (478)
                      +.+++|+|++|.++.+|+ .|.++++|++|++++|.+..+ |..+.++++|++|++++|+++.+|..  ....|+.|+..
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~--~~~~l~~L~~~  108 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELRVH  108 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS--CCTTCCEEECC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc--hhhhhhhhhcc
Confidence            579999999999999987 589999999999999999977 55689999999999999999999874  34689999997


Q ss_pred             CCCCCCCCCCCCCCCCCCcEeCcccCC----CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCc
Q 047959          212 SITLPAPPKNNSSPLKNLIFISALHPS----SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGK  287 (478)
Q Consensus       212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~  287 (478)
                      .|......+..+.....+..+....+.    ......+..+++|+.++++++.  . ..++.  ..+++|+.|+++++..
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~--l-~~l~~--~~~~~L~~L~l~~n~~  183 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN--I-TTIPQ--GLPPSLTELHLDGNKI  183 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC--C-CSCCS--SCCTTCSEEECTTSCC
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC--c-cccCc--ccCCccCEEECCCCcC
Confidence            776554333335556667777766654    3345567888999999999873  2 22222  2468999999987333


Q ss_pred             ccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCC
Q 047959          288 MRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLE  367 (478)
Q Consensus       288 l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~  367 (478)
                      ....+.   .+.. ++.++.|++++|.+.......+.++++|++|+|++|.+.... . . +..+++|++|+++++ .++
T Consensus       184 ~~~~~~---~~~~-~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp-~-~-l~~l~~L~~L~Ls~N-~i~  255 (305)
T d1xkua_         184 TKVDAA---SLKG-LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-G-G-LADHKYIQVVYLHNN-NIS  255 (305)
T ss_dssp             CEECTG---GGTT-CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC-T-T-TTTCSSCCEEECCSS-CCC
T ss_pred             CCCChh---Hhhc-cccccccccccccccccccccccccccceeeecccccccccc-c-c-cccccCCCEEECCCC-ccC
Confidence            334455   6777 899999999999988877788899999999999999886532 2 2 778999999999994 687


Q ss_pred             ceeeC-------CCcccccceeEEecCCC
Q 047959          368 EWTMG-------AGAMPKLESLILNPCAY  389 (478)
Q Consensus       368 ~l~~~-------~~~~~~L~~L~l~~c~~  389 (478)
                      .++..       ....++|+.|++++|+.
T Consensus       256 ~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         256 AIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ccChhhccCcchhcccCCCCEEECCCCcC
Confidence            76532       23568899999999984

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=4.7e-18  Score=164.07  Aligned_cols=257  Identities=20%  Similarity=0.208  Sum_probs=198.4

Q ss_pred             CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccc--------------
Q 047959          131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSP--------------  196 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp--------------  196 (478)
                      ..+++|++|++++|.++.+|. ++++++|++|++++|.+..++ .++++++|+.|+++++.+..++              
T Consensus        63 ~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~-~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~  140 (384)
T d2omza2          63 EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS  140 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEE
T ss_pred             ccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            567888899999988887775 888888999999888888776 4788888888888876543221              


Q ss_pred             --------------------------------------------------hhhhccccCcEEEeeCCCCCCCCCCCCCCC
Q 047959          197 --------------------------------------------------EDIWMMQKLMHLNFGSITLPAPPKNNSSPL  226 (478)
Q Consensus       197 --------------------------------------------------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l  226 (478)
                                                                        .....+++++.+++++|......|  ...+
T Consensus       141 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~  218 (384)
T d2omza2         141 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGIL  218 (384)
T ss_dssp             EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGC
T ss_pred             cccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc--cccc
Confidence                                                              123455667777775554443222  4567


Q ss_pred             CCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCce
Q 047959          227 KNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLT  306 (478)
Q Consensus       227 ~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~  306 (478)
                      ++|++|++.++.-..+..+..+++|+.|+++++.  ..+ ++ .+..+++|+.|++++ +.+..++    .+.. ++.++
T Consensus       219 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~--l~~-~~-~~~~~~~L~~L~l~~-~~l~~~~----~~~~-~~~l~  288 (384)
T d2omza2         219 TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ--ISN-LA-PLSGLTKLTELKLGA-NQISNIS----PLAG-LTALT  288 (384)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CCC-CG-GGTTCTTCSEEECCS-SCCCCCG----GGTT-CTTCS
T ss_pred             CCCCEEECCCCCCCCcchhhcccccchhccccCc--cCC-CC-cccccccCCEeeccC-cccCCCC----cccc-ccccc
Confidence            8999999998883334568889999999999984  222 22 377899999999987 7777776    3555 78999


Q ss_pred             EEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEec
Q 047959          307 QLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNP  386 (478)
Q Consensus       307 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~  386 (478)
                      .+.+..|.+.+  +..+..+++++.|++++|.+.+...    +..+++|++|++++| .++.++ .++.+++|+.|++++
T Consensus       289 ~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~----l~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~  360 (384)
T d2omza2         289 NLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP----VSSLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGH  360 (384)
T ss_dssp             EEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGG----GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCS
T ss_pred             ccccccccccc--ccccchhcccCeEECCCCCCCCCcc----cccCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCC
Confidence            99999998754  4568889999999999998876431    578999999999996 778776 477899999999998


Q ss_pred             CCCCCCCccccCCCCCCCEEEEecC
Q 047959          387 CAYLRKLPEEQWCIKSLCKLELHWP  411 (478)
Q Consensus       387 c~~l~~lp~~l~~l~~L~~L~l~~c  411 (478)
                      |. ++.++. +.++++|+.|+|+++
T Consensus       361 N~-l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         361 NQ-ISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SC-CCBCGG-GTTCTTCSEEECCCE
T ss_pred             Cc-CCCChh-hccCCCCCEeeCCCC
Confidence            85 566654 789999999999874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.6e-18  Score=156.28  Aligned_cols=195  Identities=19%  Similarity=0.114  Sum_probs=129.9

Q ss_pred             CeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeC
Q 047959          134 KHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGS  212 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~  212 (478)
                      ..+...+-+++.++.+|+.+.  +++++|+|++|.++.+|. .+.++++|++|++++|++..+|. ++.+++|++|++++
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSH   86 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCS
T ss_pred             CCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccccccc
Confidence            344556788888888887664  478888888888887774 57788888888888888888775 46788888888877


Q ss_pred             CCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc
Q 047959          213 ITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ  290 (478)
Q Consensus       213 ~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~  290 (478)
                      |.+. ..+..+..+++|+.|++..+.  ......+..+.+++.|.++++  ......+..+..+++++.+++++ +.++.
T Consensus        87 N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n--~l~~l~~~~~~~l~~l~~l~l~~-N~l~~  162 (266)
T d1p9ag_          87 NQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLAN-NNLTE  162 (266)
T ss_dssp             SCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS--CCCCCCTTTTTTCTTCCEEECTT-SCCSC
T ss_pred             cccc-ccccccccccccccccccccccceeecccccccccccccccccc--ccceeccccccccccchhccccc-ccccc
Confidence            7554 345567777778888777766  333444566677777777666  22222233445566666666665 55665


Q ss_pred             cCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcc
Q 047959          291 LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSY  339 (478)
Q Consensus       291 ~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~  339 (478)
                      +|..  .+.. +++|+.|+|++|.++ ..++.+..+++|+.|+|++|.+
T Consensus       163 ~~~~--~~~~-l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         163 LPAG--LLNG-LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCTT--TTTT-CTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             cCcc--cccc-ccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            5531  3455 666777777776665 3445555666666777666654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.8e-19  Score=163.90  Aligned_cols=213  Identities=15%  Similarity=0.125  Sum_probs=118.4

Q ss_pred             EecCCCCCcCCccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEeeCCCCCC
Q 047959          140 NLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNFGSITLPA  217 (478)
Q Consensus       140 ~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~  217 (478)
                      +.+++.++.+|..+.  ..+++|++++|.|+.+|. .+.++++|++|+++++.+..++.. +..+..++++....+....
T Consensus        17 ~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~   94 (284)
T d1ozna_          17 SCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR   94 (284)
T ss_dssp             ECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred             EcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            445555666665443  356666666666666654 356666666666666666555432 3345566666553332222


Q ss_pred             C-CCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCcc
Q 047959          218 P-PKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRM  294 (478)
Q Consensus       218 ~-~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~  294 (478)
                      . .+..+.++++|++|++..+.  ......+...++|+.++++++  ......+..+..+++|+.|++++ +.++.+|..
T Consensus        95 ~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N--~l~~i~~~~f~~~~~L~~L~l~~-N~l~~l~~~  171 (284)
T d1ozna_          95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN--ALQALPDDTFRDLGNLTHLFLHG-NRISSVPER  171 (284)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS-SCCCEECTT
T ss_pred             cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccc--cccccChhHhccccchhhccccc-Ccccccchh
Confidence            2 24445666666666666655  223334555666666666665  22222233455566666666665 555555431


Q ss_pred             ccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEec
Q 047959          295 ILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKS  362 (478)
Q Consensus       295 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~  362 (478)
                        .+.. +++|+.+++++|.+++..+..++.+++|++|++++|.+.......  +..+++|++|++++
T Consensus       172 --~f~~-l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~--~~~~~~L~~L~l~~  234 (284)
T d1ozna_         172 --AFRG-LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--LAPLRALQYLRLND  234 (284)
T ss_dssp             --TTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH--HTTCTTCCEEECCS
T ss_pred             --hhcc-ccccchhhhhhccccccChhHhhhhhhcccccccccccccccccc--cccccccCEEEecC
Confidence              3444 666666666666665555556666666666666666655443322  45566666666665

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.1e-18  Score=155.86  Aligned_cols=181  Identities=18%  Similarity=0.167  Sum_probs=155.1

Q ss_pred             ccCCC-CeEeEEEecCCCCCcCCc-cCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCc
Q 047959          129 FCKKF-KHLRVLNLGSAVLDQYPP-GLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLM  206 (478)
Q Consensus       129 ~~~~~-~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~  206 (478)
                      ++..+ +++++|+|++|.++.+|. .|.++++|++|++++|.++.+|. ++.+++|++|++++|.+...+..+..+++|+
T Consensus        25 iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~  103 (266)
T d1p9ag_          25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALT  103 (266)
T ss_dssp             CCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCC
T ss_pred             eCcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            34334 479999999999998875 48999999999999999998874 5789999999999999999998899999999


Q ss_pred             EEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCC-ccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEe
Q 047959          207 HLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVN  284 (478)
Q Consensus       207 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~  284 (478)
                      .|+++++......+..+..+.++++|.+..+. ... +..+..+++|+.+++++|  ......+..+..+++|++|++++
T Consensus       104 ~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N--~l~~~~~~~~~~l~~L~~L~Ls~  181 (266)
T d1p9ag_         104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN--NLTELPAGLLNGLENLDTLLLQE  181 (266)
T ss_dssp             EEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS--CCSCCCTTTTTTCTTCCEEECCS
T ss_pred             cccccccccceeeccccccccccccccccccccceeccccccccccchhcccccc--cccccCccccccccccceeeccc
Confidence            99998887776667778889999999999888 443 455678999999999998  45555556688899999999998


Q ss_pred             cCcccccCccccccccCCCCceEEEEEeecCCC
Q 047959          285 EGKMRQLSRMILSEYKFPPSLTQLSLSNTELVE  317 (478)
Q Consensus       285 ~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~  317 (478)
                       +.++.+|.   .+.. +++|+.|+|++|++..
T Consensus       182 -N~L~~lp~---~~~~-~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         182 -NSLYTIPK---GFFG-SHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             -SCCCCCCT---TTTT-TCCCSEEECCSCCBCC
T ss_pred             -CCCcccCh---hHCC-CCCCCEEEecCCCCCC
Confidence             88999998   8888 9999999999998654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.6e-17  Score=149.79  Aligned_cols=201  Identities=18%  Similarity=0.205  Sum_probs=167.9

Q ss_pred             CeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCC-cCcccc-hhhhccccCcEEE
Q 047959          134 KHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSS-YIDHSP-EDIWMMQKLMHLN  209 (478)
Q Consensus       134 ~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~-~l~~lp-~~i~~l~~L~~L~  209 (478)
                      +.+++|+|++|.++.+|.. +.++++|++|+++++.+..++. .+..+..++.+++..+ .+..++ ..+.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            3578999999999988864 9999999999999999996654 4567889999988766 788884 5688999999999


Q ss_pred             eeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCC-ccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCc
Q 047959          210 FGSITLPAPPKNNSSPLKNLIFISALHPS-SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGK  287 (478)
Q Consensus       210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~  287 (478)
                      +++|......+..+..+.+|+.+++..+. ..+ +..+..+++|+.|+++++  ......+..+..+++|+.+++++ +.
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N--~l~~l~~~~f~~l~~L~~l~l~~-N~  188 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN--RISSVPERAFRGLHSLDRLLLHQ-NR  188 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCS-SC
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccC--cccccchhhhccccccchhhhhh-cc
Confidence            98877665566678889999999999988 444 456889999999999998  44444456778999999999998 66


Q ss_pred             cccc-CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccC
Q 047959          288 MRQL-SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLE  341 (478)
Q Consensus       288 l~~~-p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  341 (478)
                      +..+ |.   ++.. +++|+.|++++|.+....+..++.+++|+.|++++|.+..
T Consensus       189 l~~i~~~---~f~~-l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         189 VAHVHPH---AFRD-LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CCEECTT---TTTT-CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             ccccChh---Hhhh-hhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            6655 66   7888 9999999999999988877889999999999999988754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=2e-16  Score=140.91  Aligned_cols=188  Identities=21%  Similarity=0.231  Sum_probs=111.1

Q ss_pred             CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEe
Q 047959          131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNF  210 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l  210 (478)
                      ..+.+|+.|++++|.++.++ .+.++++|++|++++|.+..++ .+..+++|+++++++|.++.++ .+..+++|+.+++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred             HHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccc-cccccccccccccccccccccc-ccccccccccccc
Confidence            44566788888888887764 4778888888888888777665 3777788888888888777765 3677788888887


Q ss_pred             eCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc
Q 047959          211 GSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ  290 (478)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~  290 (478)
                      +.+....  ...+...+.++.+.+..+.......+..+++|+.|.++++.  ....  ..++.+++|+.|++++ +.++.
T Consensus       115 ~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~~~--~~l~~l~~L~~L~Ls~-n~l~~  187 (227)
T d1h6ua2         115 TSTQITD--VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ--VSDL--TPLANLSKLTTLKADD-NKISD  187 (227)
T ss_dssp             TTSCCCC--CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC--CCCC--GGGTTCTTCCEEECCS-SCCCC
T ss_pred             ccccccc--cchhccccchhhhhchhhhhchhhhhccccccccccccccc--cccc--hhhcccccceecccCC-CccCC
Confidence            5543322  12244455566665555442222334555666666665552  1111  1244555556666554 45555


Q ss_pred             cCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEe
Q 047959          291 LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLK  335 (478)
Q Consensus       291 ~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~  335 (478)
                      +|    .+.. +++|++|++++|+++.  .+.++++++|+.|+++
T Consensus       188 l~----~l~~-l~~L~~L~Ls~N~lt~--i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         188 IS----PLAS-LPNLIEVHLKNNQISD--VSPLANTSNLFIVTLT  225 (227)
T ss_dssp             CG----GGGG-CTTCCEEECTTSCCCB--CGGGTTCTTCCEEEEE
T ss_pred             Ch----hhcC-CCCCCEEECcCCcCCC--CcccccCCCCCEEEee
Confidence            44    3444 5555555555555443  2234555555555554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=1.2e-15  Score=135.66  Aligned_cols=189  Identities=19%  Similarity=0.194  Sum_probs=105.8

Q ss_pred             CCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEe
Q 047959          153 LENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFI  232 (478)
Q Consensus       153 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  232 (478)
                      ++.+.+|++|++.+|+++.++ .+..+++|++|++++|.+..+++ +..+++|+++++++|... .++ .+.++++|+.+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l  112 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTL  112 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEE
T ss_pred             HHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc-cccccccccccccccccc-ccc-ccccccccccc
Confidence            455677788888887777774 57777888888888877776654 677777777777555332 222 34555666666


Q ss_pred             CcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEe
Q 047959          233 SALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSN  312 (478)
Q Consensus       233 ~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~  312 (478)
                      .+..+.......+...+.++.+.++++                           .+...+    .+.. +++|+.|++++
T Consensus       113 ~l~~~~~~~~~~~~~~~~~~~l~~~~~---------------------------~~~~~~----~~~~-~~~L~~L~l~~  160 (227)
T d1h6ua2         113 DLTSTQITDVTPLAGLSNLQVLYLDLN---------------------------QITNIS----PLAG-LTNLQYLSIGN  160 (227)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSS---------------------------CCCCCG----GGGG-CTTCCEEECCS
T ss_pred             ccccccccccchhccccchhhhhchhh---------------------------hhchhh----hhcc-ccccccccccc
Confidence            555544222223334444444444333                           222222    2233 45566666655


Q ss_pred             ecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEe
Q 047959          313 TELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILN  385 (478)
Q Consensus       313 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~  385 (478)
                      |.+..  ...++++++|+.|++++|.+.+..  .  +..+++|++|++++| .++.++. ...+++|+.|+++
T Consensus       161 n~~~~--~~~l~~l~~L~~L~Ls~n~l~~l~--~--l~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         161 AQVSD--LTPLANLSKLTTLKADDNKISDIS--P--LASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             SCCCC--CGGGTTCTTCCEEECCSSCCCCCG--G--GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEE
T ss_pred             ccccc--chhhcccccceecccCCCccCCCh--h--hcCCCCCCEEECcCC-cCCCCcc-cccCCCCCEEEee
Confidence            55432  223555666666666655544321  1  445566666666664 4555542 4556666666665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=1.4e-15  Score=133.37  Aligned_cols=164  Identities=20%  Similarity=0.194  Sum_probs=103.5

Q ss_pred             CCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeC
Q 047959          133 FKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGS  212 (478)
Q Consensus       133 ~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~  212 (478)
                      +..|+.|++++|.++.++. +..+++|++|++++|.++.++ .++.+++|++|++++|.+..+| .+..+++|+.|++++
T Consensus        45 L~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTT
T ss_pred             hcCccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-ccccccccccccccc
Confidence            4567778888888776654 677788888888888877766 4677788888888888777776 367777888887755


Q ss_pred             CCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccC
Q 047959          213 ITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLS  292 (478)
Q Consensus       213 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p  292 (478)
                      +... .+ ..+..+++++.+++..+.-..+.                          .+..+++|+.+++++ +.++.++
T Consensus       122 ~~~~-~~-~~l~~l~~l~~l~~~~n~l~~~~--------------------------~~~~l~~L~~l~l~~-n~l~~i~  172 (210)
T d1h6ta2         122 NGIS-DI-NGLVHLPQLESLYLGNNKITDIT--------------------------VLSRLTKLDTLSLED-NQISDIV  172 (210)
T ss_dssp             SCCC-CC-GGGGGCTTCCEEECCSSCCCCCG--------------------------GGGGCTTCSEEECCS-SCCCCCG
T ss_pred             cccc-cc-ccccccccccccccccccccccc--------------------------ccccccccccccccc-ccccccc
Confidence            4322 11 12344444444444333211111                          233456666666665 5555554


Q ss_pred             ccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEe
Q 047959          293 RMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLK  335 (478)
Q Consensus       293 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~  335 (478)
                          .+.. +++|+.|++++|.++.  .+.+..+++|++|+|+
T Consensus       173 ----~l~~-l~~L~~L~Ls~N~i~~--l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         173 ----PLAG-LTKLQNLYLSKNHISD--LRALAGLKNLDVLELF  208 (210)
T ss_dssp             ----GGTT-CTTCCEEECCSSCCCB--CGGGTTCTTCSEEEEE
T ss_pred             ----cccC-CCCCCEEECCCCCCCC--ChhhcCCCCCCEEEcc
Confidence                3455 6777777777776643  3456777777777776

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.61  E-value=8.3e-15  Score=138.96  Aligned_cols=252  Identities=22%  Similarity=0.216  Sum_probs=131.6

Q ss_pred             ccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEE
Q 047959          129 FCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHL  208 (478)
Q Consensus       129 ~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L  208 (478)
                      ++...++|++|++++|.++.+|+.+   .+|+.|++++|.++.++.-   .+.|++|++++|.+..+|. ++.+++|++|
T Consensus        53 lp~~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~l~~lp~-~~~l~~L~~L  125 (353)
T d1jl5a_          53 LPELPPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLPE-LQNSSFLKII  125 (353)
T ss_dssp             CCSCCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCCC-CTTCTTCCEE
T ss_pred             CCCCCCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh---ccccccccccccccccccc-hhhhccceee
Confidence            3344456777777777777777643   3677777777776655521   1357777777777777775 5677777777


Q ss_pred             EeeCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcc----------------hhhHHHhcc
Q 047959          209 NFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYY----------------HSGVSKSLC  272 (478)
Q Consensus       209 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----------------~~~l~~~l~  272 (478)
                      +++++... ..+..   ...+..+.+..+.......++.++.++.+.+..+....                .........
T Consensus       126 ~l~~~~~~-~~~~~---~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  201 (353)
T d1jl5a_         126 DVDNNSLK-KLPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQ  201 (353)
T ss_dssp             ECCSSCCS-CCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCT
T ss_pred             cccccccc-ccccc---cccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccccccc
Confidence            77554332 22222   23333444333333333445666677777766653000                000011233


Q ss_pred             CCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccC-----------
Q 047959          273 QLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLE-----------  341 (478)
Q Consensus       273 ~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-----------  341 (478)
                      .++.|+.+.+++ +....+|.   .    ..++..+.+..+.+... ..   ..+.+...++..+.+.+           
T Consensus       202 ~l~~L~~l~l~~-n~~~~~~~---~----~~~l~~~~~~~~~~~~~-~~---~~~~l~~~~~~~~~~~~l~~l~~~~~~~  269 (353)
T d1jl5a_         202 NLPFLTTIYADN-NLLKTLPD---L----PPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSGLSELPPNLYYL  269 (353)
T ss_dssp             TCTTCCEEECCS-SCCSSCCS---C----CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSEESCCCTTCCEE
T ss_pred             cccccccccccc-cccccccc---c----ccccccccccccccccc-cc---ccccccccccccccccccccccchhccc
Confidence            445556666554 33333332   1    23344444444433211 00   11122222222111100           


Q ss_pred             ----ceeEEeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          342 ----RKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       342 ----~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                          ...... ...+++|++|+|++| .++.+|.   .+++|+.|++++|. ++.+|..   +++|++|++++|+
T Consensus       270 ~~~~~~~~~~-~~~~~~L~~L~Ls~N-~l~~lp~---~~~~L~~L~L~~N~-L~~l~~~---~~~L~~L~L~~N~  335 (353)
T d1jl5a_         270 NASSNEIRSL-CDLPPSLEELNVSNN-KLIELPA---LPPRLERLIASFNH-LAEVPEL---PQNLKQLHVEYNP  335 (353)
T ss_dssp             ECCSSCCSEE-CCCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC
T ss_pred             ccccCccccc-cccCCCCCEEECCCC-ccCcccc---ccCCCCEEECCCCc-CCccccc---cCCCCEEECcCCc
Confidence                000000 234578888888875 5666653   46788888888774 5667652   4578888888876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=4.4e-15  Score=129.08  Aligned_cols=161  Identities=19%  Similarity=0.268  Sum_probs=75.5

Q ss_pred             CCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeC
Q 047959          133 FKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGS  212 (478)
Q Consensus       133 ~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~  212 (478)
                      +++++.|+++++.++.+.. +..+++|++|++++|.++.++. ++++++|++|++++|.+..++. +.++++|+.|++++
T Consensus        39 l~~l~~L~l~~~~i~~l~~-l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~  115 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN  115 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECCS
T ss_pred             hcCCCEEECCCCCCCCccc-cccCCCcCcCccccccccCccc-ccCCcccccccccccccccccc-cccccccccccccc
Confidence            3445555555555554432 4455555555555555554442 4555555555555555444442 44555555555533


Q ss_pred             CCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccC
Q 047959          213 ITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLS  292 (478)
Q Consensus       213 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p  292 (478)
                      +...                        ....+..+++|+.|+++++.  .. .+ ..+..+++|+.|++.+ +.++.++
T Consensus       116 ~~~~------------------------~~~~~~~l~~L~~L~l~~n~--l~-~~-~~l~~~~~L~~L~l~~-n~l~~l~  166 (199)
T d2omxa2         116 NQIT------------------------DIDPLKNLTNLNRLELSSNT--IS-DI-SALSGLTSLQQLNFSS-NQVTDLK  166 (199)
T ss_dssp             SCCC------------------------CCGGGTTCTTCSEEECCSSC--CC-CC-GGGTTCTTCSEEECCS-SCCCCCG
T ss_pred             cccc------------------------cccccchhhhhHHhhhhhhh--hc-cc-cccccccccccccccc-ccccCCc
Confidence            2211                        11223344444555554441  11 11 1234445555555554 4444444


Q ss_pred             ccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeE
Q 047959          293 RMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVL  332 (478)
Q Consensus       293 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  332 (478)
                          .+.. +++|+.|++++|++++  .+.++.+++|++|
T Consensus       167 ----~l~~-l~~L~~L~ls~N~i~~--i~~l~~L~~L~~L  199 (199)
T d2omxa2         167 ----PLAN-LTTLERLDISSNKVSD--ISVLAKLTNLESL  199 (199)
T ss_dssp             ----GGTT-CTTCCEEECCSSCCCC--CGGGGGCTTCSEE
T ss_pred             ----cccC-CCCCCEEECCCCCCCC--CccccCCCCCCcC
Confidence                3444 5566666666655433  2334555555543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=5.4e-15  Score=128.49  Aligned_cols=125  Identities=22%  Similarity=0.240  Sum_probs=98.5

Q ss_pred             cCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEE
Q 047959          130 CKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLN  209 (478)
Q Consensus       130 ~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  209 (478)
                      +..+++|++|++++|.++.++. ++++++|++|++++|.+..++ .+.++++|+.|++++|....++ .+..+++|+.|+
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~  134 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLE  134 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred             cccCCCcCcCccccccccCccc-ccCCccccccccccccccccc-cccccccccccccccccccccc-ccchhhhhHHhh
Confidence            4678999999999999997775 899999999999999999887 4889999999999999777764 478899999999


Q ss_pred             eeCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEec
Q 047959          210 FGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGD  259 (478)
Q Consensus       210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~  259 (478)
                      +++|.+. .+ +.+..+++|+.|++.++.-.....++++++|++|++++|
T Consensus       135 l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         135 LSSNTIS-DI-SALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSN  182 (199)
T ss_dssp             CCSSCCC-CC-GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             hhhhhhc-cc-ccccccccccccccccccccCCccccCCCCCCEEECCCC
Confidence            9777543 23 346777788888777766222234666666666666665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.58  E-value=1e-14  Score=138.36  Aligned_cols=244  Identities=20%  Similarity=0.179  Sum_probs=151.5

Q ss_pred             eEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCC
Q 047959          135 HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSIT  214 (478)
Q Consensus       135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~  214 (478)
                      ++++|||+++.++.+|+.   .++|++|++++|+++++|..   +.+|+.|++++|.+..++. +  .+.|++|++++|.
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~-l--p~~L~~L~L~~n~  109 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSD-L--PPLLEYLGVSNNQ  109 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCS-C--CTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhh-h--ccccccccccccc
Confidence            478999999999999974   46899999999999999965   4689999999998887764 1  2469999997776


Q ss_pred             CCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCc
Q 047959          215 LPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSR  293 (478)
Q Consensus       215 ~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~  293 (478)
                      +. .+| .++.+++|+.|++.++. ...+..   ...+..+.+....  .  .....+..++.++.+.+.+ +....++.
T Consensus       110 l~-~lp-~~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~--~--~~~~~l~~l~~l~~L~l~~-n~~~~~~~  179 (353)
T d1jl5a_         110 LE-KLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQ--L--EELPELQNLPFLTAIYADN-NSLKKLPD  179 (353)
T ss_dssp             CS-SCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC--C--SSCCCCTTCTTCCEEECCS-SCCSSCCC
T ss_pred             cc-ccc-chhhhccceeeccccccccccccc---cccccchhhcccc--c--cccccccccccceeccccc-cccccccc
Confidence            54 566 46789999999988876 333332   3556666665542  1  1123455677888888775 33333221


Q ss_pred             c----------------ccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccce
Q 047959          294 M----------------ILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKI  357 (478)
Q Consensus       294 ~----------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~  357 (478)
                      .                +..... ++.|+.+++++|.... .+   ....++..+.+.++.+....      ...+++..
T Consensus       180 ~~~~~~~l~~~~~~~~~~~~~~~-l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~~~~------~~~~~l~~  248 (353)
T d1jl5a_         180 LPLSLESIVAGNNILEELPELQN-LPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTDLP------ELPQSLTF  248 (353)
T ss_dssp             CCTTCCEEECCSSCCSSCCCCTT-CTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSCCC------CCCTTCCE
T ss_pred             ccccccccccccccccccccccc-cccccccccccccccc-cc---cccccccccccccccccccc------cccccccc
Confidence            0                001233 5566666666654322 11   22334555555544433211      11122222


Q ss_pred             eEEecC--CCCC--------------ceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959          358 LHLKSM--LWLE--------------EWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       358 L~L~~~--~~l~--------------~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      ..+...  ..+.              .++.....+++|++|++++|. ++.+|.   .+++|+.|++++|.
T Consensus       249 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~---~~~~L~~L~L~~N~  315 (353)
T d1jl5a_         249 LDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPA---LPPRLERLIASFNH  315 (353)
T ss_dssp             EECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC
T ss_pred             cccccccccccccccchhcccccccCccccccccCCCCCEEECCCCc-cCcccc---ccCCCCEEECCCCc
Confidence            222210  0000              111112346899999999985 667876   46799999999875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=6.7e-15  Score=129.05  Aligned_cols=166  Identities=20%  Similarity=0.242  Sum_probs=113.4

Q ss_pred             CCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCc
Q 047959          155 NLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISA  234 (478)
Q Consensus       155 ~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  234 (478)
                      .+.+|++|++++|.++.++ .+..+++|++|++++|.+..++. ++.+++|++|++++|.+. .++              
T Consensus        44 ~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~-~l~--------------  106 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK-DLS--------------  106 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CGG--------------
T ss_pred             HhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCccc-cccCcccccccccccccc-ccc--------------
Confidence            3556777777777777665 36667777777777777776653 566777777777555432 122              


Q ss_pred             ccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeec
Q 047959          235 LHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTE  314 (478)
Q Consensus       235 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~  314 (478)
                               .+..+++|+.|+++++.  .. . ...+..+++++.+++++ +.++..+    .... +++|+.+++++|.
T Consensus       107 ---------~l~~l~~L~~L~l~~~~--~~-~-~~~l~~l~~l~~l~~~~-n~l~~~~----~~~~-l~~L~~l~l~~n~  167 (210)
T d1h6ta2         107 ---------SLKDLKKLKSLSLEHNG--IS-D-INGLVHLPQLESLYLGN-NKITDIT----VLSR-LTKLDTLSLEDNQ  167 (210)
T ss_dssp             ---------GGTTCTTCCEEECTTSC--CC-C-CGGGGGCTTCCEEECCS-SCCCCCG----GGGG-CTTCSEEECCSSC
T ss_pred             ---------ccccccccccccccccc--cc-c-ccccccccccccccccc-ccccccc----cccc-ccccccccccccc
Confidence                     24445555555555542  11 1 12355677788888776 6666555    5667 8999999999999


Q ss_pred             CCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEec
Q 047959          315 LVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKS  362 (478)
Q Consensus       315 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~  362 (478)
                      +++  ...++++++|++|++++|.+++..   . +.++++|++|+|++
T Consensus       168 l~~--i~~l~~l~~L~~L~Ls~N~i~~l~---~-l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         168 ISD--IVPLAGLTKLQNLYLSKNHISDLR---A-LAGLKNLDVLELFS  209 (210)
T ss_dssp             CCC--CGGGTTCTTCCEEECCSSCCCBCG---G-GTTCTTCSEEEEEE
T ss_pred             ccc--cccccCCCCCCEEECCCCCCCCCh---h-hcCCCCCCEEEccC
Confidence            864  345889999999999999886422   2 68899999999975

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.1e-17  Score=149.82  Aligned_cols=180  Identities=20%  Similarity=0.253  Sum_probs=86.1

Q ss_pred             CCCCCcEEeCCCCcCc--ccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCCC----CCccccCCCCCC
Q 047959          178 TLLNLQTLEMPSSYID--HSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSS----CTPDILGRLPNV  251 (478)
Q Consensus       178 ~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~----~~~~~l~~l~~L  251 (478)
                      ...+|++||+++|.+.  .++..+.++++|++|+++++......+..+..+++|++|++.+|..    .......++++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            3445666666666432  2334445566666666644433322333344445555555554430    111123345666


Q ss_pred             cEEEEEecCCcchhhHHHhcc-CCCCCCEEEEEecC-ccc--ccCccccccccCCCCceEEEEEeec-CCCCCcCcccCC
Q 047959          252 QTLRISGDLSYYHSGVSKSLC-QLHKLECLKLVNEG-KMR--QLSRMILSEYKFPPSLTQLSLSNTE-LVEDPMPTLEEL  326 (478)
Q Consensus       252 ~~L~l~~~~~~~~~~l~~~l~-~~~~L~~L~l~~~~-~l~--~~p~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l  326 (478)
                      ++|++++|.....+.+...+. ..++|+.|+++++. .++  .+..   .... +++|++|++++|. +++..+..+.++
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~---l~~~-~~~L~~L~L~~~~~itd~~~~~l~~~  199 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST---LVRR-CPNLVHLDLSDSVMLKNDCFQEFFQL  199 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH---HHHH-CTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccc---cccc-cccccccccccccCCCchhhhhhccc
Confidence            666666653222233322222 23566666665432 222  1222   2233 5666666666653 444445555566


Q ss_pred             CCCCeEEEeeCc-ccCceeEEeCCCCCcccceeEEecC
Q 047959          327 PHLEVLKLKQNS-YLERKLACVGCSSFPQLKILHLKSM  363 (478)
Q Consensus       327 ~~L~~L~L~~~~-~~~~~~~~~~~~~~~~L~~L~L~~~  363 (478)
                      ++|++|+|++|. +++..+..  +..+|+|+.|++.+|
T Consensus       200 ~~L~~L~L~~C~~i~~~~l~~--L~~~~~L~~L~l~~~  235 (284)
T d2astb2         200 NYLQHLSLSRCYDIIPETLLE--LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCCEEECTTCTTCCGGGGGG--GGGCTTCCEEECTTS
T ss_pred             CcCCEEECCCCCCCChHHHHH--HhcCCCCCEEeeeCC
Confidence            666666666543 33322221  344566666666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7.8e-15  Score=131.73  Aligned_cols=197  Identities=14%  Similarity=0.154  Sum_probs=107.4

Q ss_pred             eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcc-cc-hhhhccccCcEEEeeCC
Q 047959          137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDH-SP-EDIWMMQKLMHLNFGSI  213 (478)
Q Consensus       137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~-lp-~~i~~l~~L~~L~l~~~  213 (478)
                      ++++.++..++.+|..+.  .++++|++++|.++.+|. .+.++++|++|++++|.+.. ++ ..+..+++++++.+..+
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            466677777777776553  467888888888777765 36777888888887775543 33 23556777777776543


Q ss_pred             -CCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCC-cchhhHHHhccCC-CCCCEEEEEecCcccc
Q 047959          214 -TLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLS-YYHSGVSKSLCQL-HKLECLKLVNEGKMRQ  290 (478)
Q Consensus       214 -~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~l~~~l~~~-~~L~~L~l~~~~~l~~  290 (478)
                       ......+..+..+++|+.+.+.++.-........+.+++.+....... .....-...+..+ ..++.|++.+ +.++.
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~  167 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQE  167 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCE
T ss_pred             ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccc-ccccc
Confidence             333334444666777777777666511122233333344333322210 1111111222222 2555666654 55666


Q ss_pred             cCccccccccCCCCceEEE-EEeecCCCCCcCcccCCCCCCeEEEeeCccc
Q 047959          291 LSRMILSEYKFPPSLTQLS-LSNTELVEDPMPTLEELPHLEVLKLKQNSYL  340 (478)
Q Consensus       291 ~p~~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  340 (478)
                      ++.   .... ..+++.+. +.+|.++......+.++++|++|+|++|.+.
T Consensus       168 i~~---~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         168 IHN---CAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             ECT---TTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             ccc---cccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            655   4444 45554443 3444454433444566666666666666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.8e-17  Score=150.00  Aligned_cols=61  Identities=21%  Similarity=0.135  Sum_probs=29.1

Q ss_pred             CCcccceeEEecCCCCC-ceeeCCCcccccceeEEecCCCCCC-CccccCCCCCCCEEEEecC
Q 047959          351 SFPQLKILHLKSMLWLE-EWTMGAGAMPKLESLILNPCAYLRK-LPEEQWCIKSLCKLELHWP  411 (478)
Q Consensus       351 ~~~~L~~L~L~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c  411 (478)
                      .+|+|++|++++|+.++ ........+++|+.|++++|..++. ....+.++++|+.|++.+|
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            34555555555554444 2222234455555555555554432 1123444555555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=6.5e-14  Score=111.18  Aligned_cols=100  Identities=22%  Similarity=0.277  Sum_probs=81.7

Q ss_pred             eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCC
Q 047959          137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLP  216 (478)
Q Consensus       137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~  216 (478)
                      |+|+|++|.++.++. ++++.+|++|++++|.++.+|+.++.+++|++|++++|.+..+|. +.++++|++|++++|.+.
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-cccccccCeEECCCCccC
Confidence            689999999998875 889999999999999999999889999999999999999999874 889999999999877654


Q ss_pred             CC-CCCCCCCCCCCcEeCcccCC
Q 047959          217 AP-PKNNSSPLKNLIFISALHPS  238 (478)
Q Consensus       217 ~~-~~~~~~~l~~L~~L~l~~~~  238 (478)
                      .. ....+..+++|+.|++.++.
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSG
T ss_pred             CCCCchhhcCCCCCCEEECCCCc
Confidence            31 12335556666666666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.1e-14  Score=126.90  Aligned_cols=99  Identities=18%  Similarity=0.129  Sum_probs=71.2

Q ss_pred             CceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEeeCCCCCCCCC-CCCCCCCCCcEeCccc
Q 047959          159 LKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNFGSITLPAPPK-NNSSPLKNLIFISALH  236 (478)
Q Consensus       159 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~  236 (478)
                      .+.++.++.+++++|..+.  .++++|++++|.+..+|.. +.++++|++|++++|.....++ ..+..+++++++.+..
T Consensus        10 ~~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SSEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CCEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            4678888888999997663  5899999999999999864 6889999999998887655443 3456677777776554


Q ss_pred             CC---CCCccccCCCCCCcEEEEEec
Q 047959          237 PS---SCTPDILGRLPNVQTLRISGD  259 (478)
Q Consensus       237 ~~---~~~~~~l~~l~~L~~L~l~~~  259 (478)
                      +.   ...+..+.++++|+.++++++
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNT  113 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESC
T ss_pred             cccccccccccccccccccccccchh
Confidence            43   222334555666666666655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.6e-13  Score=114.44  Aligned_cols=105  Identities=17%  Similarity=0.113  Sum_probs=80.0

Q ss_pred             CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhh-hccccCcEEE
Q 047959          131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDI-WMMQKLMHLN  209 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~  209 (478)
                      .++..+|.|+|++|.++.++..+..+++|++|++++|.++.++ .+..+++|++|++++|.+..+|..+ ..+++|++|+
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccce
Confidence            4566789999999999988876778899999999999999885 5888999999999999999887654 5789999999


Q ss_pred             eeCCCCCCCCC--CCCCCCCCCcEeCcccC
Q 047959          210 FGSITLPAPPK--NNSSPLKNLIFISALHP  237 (478)
Q Consensus       210 l~~~~~~~~~~--~~~~~l~~L~~L~l~~~  237 (478)
                      +++|.+.. ++  ..+..+++|++|++.+|
T Consensus        94 L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          94 LTNNSLVE-LGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             CCSCCCCC-GGGGGGGGGCTTCCEEECCSS
T ss_pred             eccccccc-cccccccccccccchhhcCCC
Confidence            97775432 11  22344445555554444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=1.9e-12  Score=102.56  Aligned_cols=97  Identities=19%  Similarity=0.182  Sum_probs=78.3

Q ss_pred             ceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-
Q 047959          160 KYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-  238 (478)
Q Consensus       160 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-  238 (478)
                      |+|++++|+++.++ .+..+.+|++|++++|.+..+|+.++.+++|++|++++|.+. .+| ++..+++|+.|++.++. 
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCcc
Confidence            68999999999887 488999999999999999999988999999999999887665 344 47788888888888776 


Q ss_pred             CCC--ccccCCCCCCcEEEEEec
Q 047959          239 SCT--PDILGRLPNVQTLRISGD  259 (478)
Q Consensus       239 ~~~--~~~l~~l~~L~~L~l~~~  259 (478)
                      ...  ...+..+++|+.|++++|
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTS
T ss_pred             CCCCCchhhcCCCCCCEEECCCC
Confidence            322  245666777777777766

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.9e-13  Score=110.94  Aligned_cols=128  Identities=14%  Similarity=0.078  Sum_probs=88.7

Q ss_pred             CCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEe
Q 047959          153 LENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFI  232 (478)
Q Consensus       153 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  232 (478)
                      +.+...+|.|++++|+|+.+|..+..+++|++|++++|.+.+++ ++..+++|++|++++|.+....+..+..+++|++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccc
Confidence            55777899999999999999877778999999999999998885 48889999999998776553333334567788888


Q ss_pred             CcccCC-CCC--ccccCCCCCCcEEEEEecCC-cchhhHHHhccCCCCCCEEE
Q 047959          233 SALHPS-SCT--PDILGRLPNVQTLRISGDLS-YYHSGVSKSLCQLHKLECLK  281 (478)
Q Consensus       233 ~l~~~~-~~~--~~~l~~l~~L~~L~l~~~~~-~~~~~l~~~l~~~~~L~~L~  281 (478)
                      ++.+|. ...  ...+..+++|+.|++++|.- .....-...+..+++|+.|+
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            877776 322  23456667777777776631 01111122344556666655

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=6.5e-15  Score=144.83  Aligned_cols=280  Identities=18%  Similarity=0.110  Sum_probs=144.3

Q ss_pred             ccccCCCCeEeEEEecCCCCC-----cCCccCCCCCCCceEeecCCCCCc-----cchhhh-CCCCCcEEeCCCCcCcc-
Q 047959          127 ENFCKKFKHLRVLNLGSAVLD-----QYPPGLENLFYLKYLKLNIPSLKC-----LPSLLC-TLLNLQTLEMPSSYIDH-  194 (478)
Q Consensus       127 ~~~~~~~~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~~~-~l~~L~~L~l~~~~l~~-  194 (478)
                      .+++..++++++|+|++|.++     .+...+..+++|++|++++|.+..     +...+. ...+|++|++++|.+.. 
T Consensus        20 ~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~   99 (460)
T d1z7xw1          20 AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA   99 (460)
T ss_dssp             HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGG
T ss_pred             HHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccc
Confidence            455567777788888888766     334445677788888888877752     222222 12468888888886643 


Q ss_pred             ----cchhhhccccCcEEEeeCCCCCC----------------------CCCCC-----------CCCCCCCcEeCcc--
Q 047959          195 ----SPEDIWMMQKLMHLNFGSITLPA----------------------PPKNN-----------SSPLKNLIFISAL--  235 (478)
Q Consensus       195 ----lp~~i~~l~~L~~L~l~~~~~~~----------------------~~~~~-----------~~~l~~L~~L~l~--  235 (478)
                          ++..+..+++|++|++++|.+..                      ..+..           +.....++.+.+.  
T Consensus       100 ~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~  179 (460)
T d1z7xw1         100 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN  179 (460)
T ss_dssp             GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             ccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccc
Confidence                34456677788888886663210                      00000           0001222222222  


Q ss_pred             ---------------------------cCC-C-----CCccccCCCCCCcEEEEEecCCc---chhhHHHhccCCCCCCE
Q 047959          236 ---------------------------HPS-S-----CTPDILGRLPNVQTLRISGDLSY---YHSGVSKSLCQLHKLEC  279 (478)
Q Consensus       236 ---------------------------~~~-~-----~~~~~l~~l~~L~~L~l~~~~~~---~~~~l~~~l~~~~~L~~  279 (478)
                                                 .+. .     .....+...+.++.+.++.+...   ..............++.
T Consensus       180 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~  259 (460)
T d1z7xw1         180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT  259 (460)
T ss_dssp             BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             ccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccc
Confidence                                       221 0     01112334567788888776310   11233444556677888


Q ss_pred             EEEEecCcccc-----cCccccccccCCCCceEEEEEeecCCCCCcCcc-----cCCCCCCeEEEeeCcccCceeEEe--
Q 047959          280 LKLVNEGKMRQ-----LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTL-----EELPHLEVLKLKQNSYLERKLACV--  347 (478)
Q Consensus       280 L~l~~~~~l~~-----~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~L~~~~~~~~~~~~~--  347 (478)
                      +++++ +.+..     +..   .+.. .+.++.+++++|.+.+.....+     ...+.|+.++++++.++.......  
T Consensus       260 l~l~~-n~i~~~~~~~~~~---~l~~-~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~  334 (460)
T d1z7xw1         260 LWIWE-CGITAKGCGDLCR---VLRA-KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS  334 (460)
T ss_dssp             EECTT-SCCCHHHHHHHHH---HHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ccccc-ccccccccccccc---cccc-cccccccccccccccccccchhhccccccccccccccccccchhhhhhhhccc
Confidence            88876 33331     122   3344 5667777777666543222211     123466777776665544321110  


Q ss_pred             CCCCCcccceeEEecCCCCCc-----eeeCC-CcccccceeEEecCCCCC----CCccccCCCCCCCEEEEecCc
Q 047959          348 GCSSFPQLKILHLKSMLWLEE-----WTMGA-GAMPKLESLILNPCAYLR----KLPEEQWCIKSLCKLELHWPQ  412 (478)
Q Consensus       348 ~~~~~~~L~~L~L~~~~~l~~-----l~~~~-~~~~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~c~  412 (478)
                      .....++|++|+|+++ .++.     ++... ...+.|+.|++++|....    .++..+..+++|++|++++++
T Consensus       335 ~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~  408 (460)
T d1z7xw1         335 VLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  408 (460)
T ss_dssp             HHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             ccccccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCc
Confidence            0123446777777664 3431     11111 134557777777764321    133345556677777777664

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.21  E-value=2.1e-11  Score=104.72  Aligned_cols=123  Identities=16%  Similarity=0.188  Sum_probs=91.3

Q ss_pred             EeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCc-c-chhhhCCCCCcEEeCCCCcCcccc-hhhhccccCcEEEeeC
Q 047959          136 LRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKC-L-PSLLCTLLNLQTLEMPSSYIDHSP-EDIWMMQKLMHLNFGS  212 (478)
Q Consensus       136 L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~-l-p~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~  212 (478)
                      .++++.+++.++.+|..+.  .++++|++++|.|+. + +..+..+++|+.|++++|.+..++ ..+..+++|++|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            3567888888888887764  588889999988863 4 345678888999999888777665 4566788888888888


Q ss_pred             CCCCCCCCCCCCCCCCCcEeCcccCC-CCC-ccccCCCCCCcEEEEEecC
Q 047959          213 ITLPAPPKNNSSPLKNLIFISALHPS-SCT-PDILGRLPNVQTLRISGDL  260 (478)
Q Consensus       213 ~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~  260 (478)
                      |.+....+..|.++++|++|++.++. ..+ +..|..+++|++|+++++.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccc
Confidence            87665555667788888888888877 333 3446677777777777663

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.16  E-value=7.9e-12  Score=107.40  Aligned_cols=99  Identities=13%  Similarity=0.073  Sum_probs=71.2

Q ss_pred             CceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcc-cc-hhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCccc
Q 047959          159 LKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDH-SP-EDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALH  236 (478)
Q Consensus       159 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~-lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  236 (478)
                      .+.++.++++++++|..+.  .++++|++++|.+.. ++ ..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4678888888999987764  689999999998865 43 4567889999999988877766667777777888887777


Q ss_pred             CC-CCC-ccccCCCCCCcEEEEEec
Q 047959          237 PS-SCT-PDILGRLPNVQTLRISGD  259 (478)
Q Consensus       237 ~~-~~~-~~~l~~l~~L~~L~l~~~  259 (478)
                      +. ..+ +..|.++++|++|++++|
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N  112 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDN  112 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSS
T ss_pred             ccccccCHHHHhCCCcccccccCCc
Confidence            76 322 233555555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.10  E-value=7.2e-13  Score=125.26  Aligned_cols=245  Identities=16%  Similarity=0.093  Sum_probs=137.1

Q ss_pred             CCCCeEeEEEecCCCCC-----cCCccCCCCCCCceEeecCCCCCc-----------cchhhhCCCCCcEEeCCCCcCcc
Q 047959          131 KKFKHLRVLNLGSAVLD-----QYPPGLENLFYLKYLKLNIPSLKC-----------LPSLLCTLLNLQTLEMPSSYIDH  194 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~i~~-----------lp~~~~~l~~L~~L~l~~~~l~~  194 (478)
                      .....|+.|+|++|.+.     .+...+...++|+.|+++++....           +...+..+++|+.|++++|.+..
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence            44566777888877764     344446667777788777654331           22234556777777777775533


Q ss_pred             -----cchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecC--CcchhhH
Q 047959          195 -----SPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDL--SYYHSGV  267 (478)
Q Consensus       195 -----lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l  267 (478)
                           +...+..+++|++|++++|.+.......+.  ..++.+.       ........+.|+.+.++++.  ......+
T Consensus       108 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~--~~l~~~~-------~~~~~~~~~~L~~l~l~~n~i~~~~~~~l  178 (344)
T d2ca6a1         108 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--RALQELA-------VNKKAKNAPPLRSIICGRNRLENGSMKEW  178 (344)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH--HHHHHHH-------HHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred             ccccchhhhhcccccchheeccccccccccccccc--ccccccc-------cccccccCcccceeecccccccccccccc
Confidence                 334455667777777755532210000000  0000000       00112345566777776653  1233445


Q ss_pred             HHhccCCCCCCEEEEEecCcccc------cCccccccccCCCCceEEEEEeecCCCC----CcCcccCCCCCCeEEEeeC
Q 047959          268 SKSLCQLHKLECLKLVNEGKMRQ------LSRMILSEYKFPPSLTQLSLSNTELVED----PMPTLEELPHLEVLKLKQN  337 (478)
Q Consensus       268 ~~~l~~~~~L~~L~l~~~~~l~~------~p~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~~  337 (478)
                      ...+...++|+.|++++ +.+..      +..   .+.. .++|+.|++++|.++..    ....+..+++|++|+|++|
T Consensus       179 ~~~l~~~~~L~~L~L~~-n~i~~~g~~~~l~~---~l~~-~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         179 AKTFQSHRLLHTVKMVQ-NGIRPEGIEHLLLE---GLAY-CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             HHHHHHCTTCCEEECCS-SCCCHHHHHHHHHT---TGGG-CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             cchhhhhhhhccccccc-ccccccccccchhh---hhcc-hhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence            55666777888888876 44431      222   3455 77888888888776432    1234567788888888887


Q ss_pred             cccCceeEEe--C--CCCCcccceeEEecCCCCCc-----eeeCC-CcccccceeEEecCCCC
Q 047959          338 SYLERKLACV--G--CSSFPQLKILHLKSMLWLEE-----WTMGA-GAMPKLESLILNPCAYL  390 (478)
Q Consensus       338 ~~~~~~~~~~--~--~~~~~~L~~L~L~~~~~l~~-----l~~~~-~~~~~L~~L~l~~c~~l  390 (478)
                      .+++......  +  ....++|++|+++++ .++.     +.... ...++|+.|++++|...
T Consensus       254 ~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         254 LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccCchhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            7664322110  0  123467888888875 4542     22222 24678889988887653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.07  E-value=2e-12  Score=122.10  Aligned_cols=239  Identities=15%  Similarity=0.136  Sum_probs=148.6

Q ss_pred             cCCccCCCCCCCceEeecCCCCC-----ccchhhhCCCCCcEEeCCCCcCccc----c-------hhhhccccCcEEEee
Q 047959          148 QYPPGLENLFYLKYLKLNIPSLK-----CLPSLLCTLLNLQTLEMPSSYIDHS----P-------EDIWMMQKLMHLNFG  211 (478)
Q Consensus       148 ~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~l~~l----p-------~~i~~l~~L~~L~l~  211 (478)
                      .+...+.....|+.|++++|.+.     .+...+...++|+.|+++++.....    |       ..+..+++|++|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            44555666777888888887664     3444456677888888877643222    1       223445667777775


Q ss_pred             CCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchh----hHH---------HhccCCCCCC
Q 047959          212 SITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHS----GVS---------KSLCQLHKLE  278 (478)
Q Consensus       212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~l~---------~~l~~~~~L~  278 (478)
                      +|.+.....                  ..+...+..+++|+.|++++|.  ...    .+.         ......+.|+
T Consensus       102 ~n~i~~~~~------------------~~l~~~l~~~~~L~~L~l~~n~--l~~~~~~~l~~~l~~~~~~~~~~~~~~L~  161 (344)
T d2ca6a1         102 DNAFGPTAQ------------------EPLIDFLSKHTPLEHLYLHNNG--LGPQAGAKIARALQELAVNKKAKNAPPLR  161 (344)
T ss_dssp             SCCCCTTTH------------------HHHHHHHHHCTTCCEEECCSSC--CHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             ccccccccc------------------cchhhhhcccccchheeccccc--ccccccccccccccccccccccccCcccc
Confidence            553322100                  1122234456677777777763  111    111         1224678899


Q ss_pred             EEEEEecCccc-----ccCccccccccCCCCceEEEEEeecCCCC-----CcCcccCCCCCCeEEEeeCcccCceeEE--
Q 047959          279 CLKLVNEGKMR-----QLSRMILSEYKFPPSLTQLSLSNTELVED-----PMPTLEELPHLEVLKLKQNSYLERKLAC--  346 (478)
Q Consensus       279 ~L~l~~~~~l~-----~~p~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~L~~~~~~~~~~~~--  346 (478)
                      .+.+++ +.++     .+..   .+.. .++|+.|++++|.+...     ....+..+++|+.|+|++|.++......  
T Consensus       162 ~l~l~~-n~i~~~~~~~l~~---~l~~-~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         162 SIICGR-NRLENGSMKEWAK---TFQS-HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             EEECCS-SCCTGGGHHHHHH---HHHH-CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             eeeccc-ccccccccccccc---hhhh-hhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            999987 5543     2333   4556 88999999999987542     2335678899999999999876432110  


Q ss_pred             eCCCCCcccceeEEecCCCCCc-----eeeCC--CcccccceeEEecCCCCC----CCccccC-CCCCCCEEEEecCc
Q 047959          347 VGCSSFPQLKILHLKSMLWLEE-----WTMGA--GAMPKLESLILNPCAYLR----KLPEEQW-CIKSLCKLELHWPQ  412 (478)
Q Consensus       347 ~~~~~~~~L~~L~L~~~~~l~~-----l~~~~--~~~~~L~~L~l~~c~~l~----~lp~~l~-~l~~L~~L~l~~c~  412 (478)
                      ..+..+++|++|+|++|. ++.     +....  ...+.|++|++++|..-.    .+...+. ++++|+.|+++++.
T Consensus       237 ~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             ccccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            015678999999999974 542     11111  235789999999986321    1333443 68899999999865

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.05  E-value=7.1e-13  Score=114.40  Aligned_cols=68  Identities=18%  Similarity=0.148  Sum_probs=39.0

Q ss_pred             CCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCC
Q 047959          146 LDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSIT  214 (478)
Q Consensus       146 l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~  214 (478)
                      ++.++.+++.+++|++|++++|.|+.++ .+..+++|++|++++|.+..+|.....+++|++|++++|.
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~  104 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ  104 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEE
T ss_pred             hhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccccc
Confidence            3445555556666666666666666554 3555666666666666666655444445556666664443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=5e-13  Score=131.05  Aligned_cols=273  Identities=15%  Similarity=0.053  Sum_probs=170.2

Q ss_pred             CeEeEEEecCCCCC--cCCccCCCCCCCceEeecCCCCC-----ccchhhhCCCCCcEEeCCCCcCccc-----chhhh-
Q 047959          134 KHLRVLNLGSAVLD--QYPPGLENLFYLKYLKLNIPSLK-----CLPSLLCTLLNLQTLEMPSSYIDHS-----PEDIW-  200 (478)
Q Consensus       134 ~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~l~~l-----p~~i~-  200 (478)
                      .+|+.||++++.++  .+..-+..+++++.|+|++|+++     .++..+..+++|++|++++|.+...     ...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            46999999999998  33444667899999999999987     4556678899999999999987532     22222 


Q ss_pred             ccccCcEEEeeCCCCCCC----CCCCCCCCCCCcEeCcccCC-C-----CCc----------------------------
Q 047959          201 MMQKLMHLNFGSITLPAP----PKNNSSPLKNLIFISALHPS-S-----CTP----------------------------  242 (478)
Q Consensus       201 ~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~-~-----~~~----------------------------  242 (478)
                      ...+|++|++++|.+...    ++..+..+++|++|++.++. .     ...                            
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            235799999987765432    34457788999999988764 0     000                            


Q ss_pred             -cccCCCCCCcEEEEEecCCcc-------------------------------hhhHHHhccCCCCCCEEEEEecCccc-
Q 047959          243 -DILGRLPNVQTLRISGDLSYY-------------------------------HSGVSKSLCQLHKLECLKLVNEGKMR-  289 (478)
Q Consensus       243 -~~l~~l~~L~~L~l~~~~~~~-------------------------------~~~l~~~l~~~~~L~~L~l~~~~~l~-  289 (478)
                       ..+.....++.+.++.+....                               .......+...+.++.+.+.. +.+. 
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-n~~~~  240 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS-NKLGD  240 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS-SBCHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhh-ccccc
Confidence             011223455666655542000                               001111222334455555544 2211 


Q ss_pred             -----ccCccccccccCCCCceEEEEEeecCCCCC----cCcccCCCCCCeEEEeeCcccCceeEEe---CCCCCcccce
Q 047959          290 -----QLSRMILSEYKFPPSLTQLSLSNTELVEDP----MPTLEELPHLEVLKLKQNSYLERKLACV---GCSSFPQLKI  357 (478)
Q Consensus       290 -----~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~L~~~~~~~~~~~~~---~~~~~~~L~~  357 (478)
                           .++.   .... ...++.+++++|.+....    ...+...+.++.+++++|.+.+......   .......|+.
T Consensus       241 ~~~~~~~~~---~~~~-~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~  316 (460)
T d1z7xw1         241 VGMAELCPG---LLHP-SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES  316 (460)
T ss_dssp             HHHHHHHHH---HTST-TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             cccchhhcc---cccc-cccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccc
Confidence                 1111   2233 678899999888764322    2234567899999999888764332110   0234568999


Q ss_pred             eEEecCCCCCc-----eeeCCCcccccceeEEecCCCCC----CCccccC-CCCCCCEEEEecCc
Q 047959          358 LHLKSMLWLEE-----WTMGAGAMPKLESLILNPCAYLR----KLPEEQW-CIKSLCKLELHWPQ  412 (478)
Q Consensus       358 L~L~~~~~l~~-----l~~~~~~~~~L~~L~l~~c~~l~----~lp~~l~-~l~~L~~L~l~~c~  412 (478)
                      +.++++. +..     +.......++|++|++++|..-.    .++..+. ..+.|+.|++++|.
T Consensus       317 l~l~~~~-l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~  380 (460)
T d1z7xw1         317 LWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD  380 (460)
T ss_dssp             EECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             ccccccc-hhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCC
Confidence            9999864 432     11122356789999999986421    2334443 46789999999997

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.98  E-value=9.9e-13  Score=113.49  Aligned_cols=85  Identities=18%  Similarity=0.164  Sum_probs=74.6

Q ss_pred             ccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEE
Q 047959          129 FCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHL  208 (478)
Q Consensus       129 ~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L  208 (478)
                      -+..+++|+.|+|++|.++.++ .+..+++|++|++++|.++.+|.....+++|++|++++|.+..++ .+..+++|++|
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L  120 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEE
T ss_pred             HHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            3567899999999999999886 488999999999999999999876666778999999999999885 48899999999


Q ss_pred             EeeCCCC
Q 047959          209 NFGSITL  215 (478)
Q Consensus       209 ~l~~~~~  215 (478)
                      ++++|.+
T Consensus       121 ~L~~N~i  127 (198)
T d1m9la_         121 YMSNNKI  127 (198)
T ss_dssp             EESEEEC
T ss_pred             ccccchh
Confidence            9977754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.6e-08  Score=82.82  Aligned_cols=100  Identities=16%  Similarity=0.004  Sum_probs=60.2

Q ss_pred             eEEEecCCCCCcCCccCCCCCCCceEeecCC-CCCccch-hhhCCCCCcEEeCCCCcCcccc-hhhhccccCcEEEeeCC
Q 047959          137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIP-SLKCLPS-LLCTLLNLQTLEMPSSYIDHSP-EDIWMMQKLMHLNFGSI  213 (478)
Q Consensus       137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~-~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~  213 (478)
                      ..++.+++.+...|..+..+++|+.|+++++ .++.++. .+.++++|+.|++++|++..++ ..+..+++|++|++++|
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            4456666666666666667777777777654 3666653 4666777777777777777764 34666777777777666


Q ss_pred             CCCCCCCCCCCCCCCCcEeCcccC
Q 047959          214 TLPAPPKNNSSPLKNLIFISALHP  237 (478)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~l~~~  237 (478)
                      .+. .+|.......+|+.|++.++
T Consensus        91 ~l~-~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          91 ALE-SLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             CCS-CCCSTTTCSCCCCEEECCSS
T ss_pred             CCc-ccChhhhccccccccccCCC
Confidence            544 33333222224555544443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.3e-08  Score=83.48  Aligned_cols=86  Identities=15%  Similarity=0.099  Sum_probs=75.0

Q ss_pred             cCCCCeEeEEEecCCC-CCcCCcc-CCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccchhhhccccCc
Q 047959          130 CKKFKHLRVLNLGSAV-LDQYPPG-LENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLM  206 (478)
Q Consensus       130 ~~~~~~L~~L~L~~~~-l~~lp~~-~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~  206 (478)
                      +..+++|+.|+++++. ++.++.. |.++++|+.|++++|+++.++ ..+..+++|++|+|++|+++.+|.++....+|+
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~  106 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ  106 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred             ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcccccc
Confidence            3567889999998775 8877754 899999999999999999885 558899999999999999999998877777899


Q ss_pred             EEEeeCCCC
Q 047959          207 HLNFGSITL  215 (478)
Q Consensus       207 ~L~l~~~~~  215 (478)
                      +|++++|.+
T Consensus       107 ~L~L~~Np~  115 (156)
T d2ifga3         107 ELVLSGNPL  115 (156)
T ss_dssp             EEECCSSCC
T ss_pred             ccccCCCcc
Confidence            999988854

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=2.4e-06  Score=69.93  Aligned_cols=79  Identities=22%  Similarity=0.139  Sum_probs=45.0

Q ss_pred             CCCCeEeEEEecCCCCCcCC---ccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccc--------hh
Q 047959          131 KKFKHLRVLNLGSAVLDQYP---PGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSP--------ED  198 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~l~~lp---~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp--------~~  198 (478)
                      ..++.|++|+|++|.++.++   ..+..+++|++|++++|.|+.+++ ......+|+.|++++|.+....        ..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            45666777777777766443   234456677777777777666553 2223345666777766553321        11


Q ss_pred             hhccccCcEEE
Q 047959          199 IWMMQKLMHLN  209 (478)
Q Consensus       199 i~~l~~L~~L~  209 (478)
                      +..+++|++||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            33456666664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1e-05  Score=66.07  Aligned_cols=62  Identities=26%  Similarity=0.208  Sum_probs=36.5

Q ss_pred             CCCCCceEeecCCCCCcc---chhhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEeeCCCCC
Q 047959          155 NLFYLKYLKLNIPSLKCL---PSLLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFGSITLP  216 (478)
Q Consensus       155 ~l~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~  216 (478)
                      .+++|++|++++|.++.+   +..+..+++|+.|++++|.+..+++ ...+..+|+.|++++|.+.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            456677777777766643   3345566677777777776666654 1223345666666555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.21  E-value=4.7e-05  Score=62.27  Aligned_cols=83  Identities=13%  Similarity=0.154  Sum_probs=52.3

Q ss_pred             CCCCeEeEEEecCCC-CC-----cCCccCCCCCCCceEeecCCCCC-----ccchhhhCCCCCcEEeCCCCcCcc-----
Q 047959          131 KKFKHLRVLNLGSAV-LD-----QYPPGLENLFYLKYLKLNIPSLK-----CLPSLLCTLLNLQTLEMPSSYIDH-----  194 (478)
Q Consensus       131 ~~~~~L~~L~L~~~~-l~-----~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~l~~-----  194 (478)
                      .+.+.|+.|+|+++. ++     .+-..+...++|++|++++|.+.     .+...+...+.|++|++++|.+..     
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            445678888887643 54     23444666677888888887765     333445566778888888876643     


Q ss_pred             cchhhhccccCcEEEeeCC
Q 047959          195 SPEDIWMMQKLMHLNFGSI  213 (478)
Q Consensus       195 lp~~i~~l~~L~~L~l~~~  213 (478)
                      +-..+...+.|++|++++|
T Consensus        92 l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCC
Confidence            2234455566777777444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.96  E-value=9.9e-05  Score=60.25  Aligned_cols=112  Identities=13%  Similarity=0.018  Sum_probs=66.3

Q ss_pred             CCCCCceEeecCC-CCC-----ccchhhhCCCCCcEEeCCCCcCc-----ccchhhhccccCcEEEeeCCCCCCCCCCCC
Q 047959          155 NLFYLKYLKLNIP-SLK-----CLPSLLCTLLNLQTLEMPSSYID-----HSPEDIWMMQKLMHLNFGSITLPAPPKNNS  223 (478)
Q Consensus       155 ~l~~L~~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~  223 (478)
                      +.++|+.|+++++ .+.     .+-..+...++|++|++++|.+.     .+...+...+.|++|++++|.+.....   
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~---   89 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL---   89 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH---
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH---
Confidence            4578999999874 455     23445667788999999988663     333455667788888887665432100   


Q ss_pred             CCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCC-----cchhhHHHhccCCCCCCEEEEEe
Q 047959          224 SPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLS-----YYHSGVSKSLCQLHKLECLKLVN  284 (478)
Q Consensus       224 ~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~-----~~~~~l~~~l~~~~~L~~L~l~~  284 (478)
                                     ..+...+...+.|++|+++++..     .....+...+...++|+.|+++.
T Consensus        90 ---------------~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          90 ---------------ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             ---------------HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             ---------------HHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence                           11222344455566666655420     11233555566667777777654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.50  E-value=0.00023  Score=57.89  Aligned_cols=80  Identities=19%  Similarity=0.225  Sum_probs=43.4

Q ss_pred             CCCCeEeEEEecCC-CCC-----cCCccCCCCCCCceEeecCCCCC-----ccchhhhCCCCCcEEeCCCCcCc-----c
Q 047959          131 KKFKHLRVLNLGSA-VLD-----QYPPGLENLFYLKYLKLNIPSLK-----CLPSLLCTLLNLQTLEMPSSYID-----H  194 (478)
Q Consensus       131 ~~~~~L~~L~L~~~-~l~-----~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~l~-----~  194 (478)
                      .+.+.|+.|+++++ .++     .+-..+...++|+.|++++|.+.     .+-..+...++++.+++++|.+.     .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            44556667777663 344     23334455666777777776655     23334455566666666666442     2


Q ss_pred             cchhhhccccCcEEEe
Q 047959          195 SPEDIWMMQKLMHLNF  210 (478)
Q Consensus       195 lp~~i~~l~~L~~L~l  210 (478)
                      +...+...++|+.+++
T Consensus        94 l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          94 LVEALQSNTSLIELRI  109 (166)
T ss_dssp             HHHGGGGCSSCCEEEC
T ss_pred             HHHHHHhCccccEEee
Confidence            2233444555555555

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.48  E-value=0.00023  Score=57.88  Aligned_cols=113  Identities=15%  Similarity=0.055  Sum_probs=65.6

Q ss_pred             CCCCCCceEeecC-CCCC-----ccchhhhCCCCCcEEeCCCCcCcc-----cchhhhccccCcEEEeeCCCCCCCCCCC
Q 047959          154 ENLFYLKYLKLNI-PSLK-----CLPSLLCTLLNLQTLEMPSSYIDH-----SPEDIWMMQKLMHLNFGSITLPAPPKNN  222 (478)
Q Consensus       154 ~~l~~L~~L~l~~-~~i~-----~lp~~~~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~~~~  222 (478)
                      .+.+.|++|++++ +.+.     .+-..+...++|++|++++|.+..     +...+...+.++.++++++.......  
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~--   91 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI--   91 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH--
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH--
Confidence            4567899999987 4455     344556678889999999986632     23445566788888875543322100  


Q ss_pred             CCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecC----CcchhhHHHhccCCCCCCEEEEEe
Q 047959          223 SSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDL----SYYHSGVSKSLCQLHKLECLKLVN  284 (478)
Q Consensus       223 ~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~----~~~~~~l~~~l~~~~~L~~L~l~~  284 (478)
                                      ..+...+...++|+.+++..+.    ......+...+...++|++|+++.
T Consensus        92 ----------------~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          92 ----------------LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             ----------------HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             ----------------HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence                            1122334445555555554332    112234555566667777777654