Citrus Sinensis ID: 047961

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

MALGERGGWDKSESRYCGVETDFNDDMPHLLSFNLSSGGFDFVVASLMDPNYRPSLMEKDIGGGSHVLSFAGSDLVLSPSQWSSHVVGKISSWIDLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPKGASCANYARCVNQILQSLNNMQLWLRIPLVKNDDDTMDFIPSGDSWELWNSFRLLCEHHSQLSVALDVLSSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKLITGFLNHSIQVVISGKLNQWCSQCELGFCFRPYWY

cccccccccccccccEEEEEccccccHHHHHHHHHHcccccEEEEccccccccccHHccccccccccccccccccEEcccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHcccccEEEEEccccccccccccccccHHHHHHHHHHHHcccEEEEcccccccccccccccccccccc

cccccccccccccccEcEEEEcccccHHHHHHHHHHHccccEEEEEcccccccHHHcccccccccccccccccccEccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHcccccEEEEEEEccccccccccccccccHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHccccEEEEEEccHHEEccccccccccHHHHHHHHHHHHcccEEEEEccccccccEEEEcEEEEEccc

malgerggwdksesrycgvetdfnddmphllsfnlssggFDFVVASlmdpnyrpslmekdigggshvlsfagsdlvlspsqwsshvvgkisswidldsedeilrMDSETTLKQEISWASHLSLqacllpspkgascanyARCVNQILQSLNNMQLWlriplvkndddtmdfipsgdswELWNSFRLLCEHHSQLSVALDVLsslpsanslgrwlgepVRAAIIHTdsfltnargypclsrRHQKLITGFLNHSIQVVISGKlnqwcsqcelgfcfrpywy

malgerggwdksesrYCGVETDFNDDMPHLLSFNLSSGGFDFVVASLMDPNYRPSLMEKDIGGGSHVLSFAGSDLVLSPSQWSSHVVGKISSWIDLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPKGASCANYARCVNQILQSLNNMQLWLRIPLVKNDDDTMDFIPSGDSWELWNSFRLLCEHHSQLSVALDVLSSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKLITGFLNHSIQVVISGKLNQWCSQCELGFCFRPYWY

***************YCGVETDFNDDMPHLLSFNLSSGGFDFVVASLMDPNYRPSLMEKDIGGGSHVLSFAGSDLVLSPSQWSSHVVGKISSWIDLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPKGASCANYARCVNQILQSLNNMQLWLRIPLVKNDDDTMDFIPSGDSWELWNSFRLLCEHHSQLSVALDVLSSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKLITGFLNHSIQVVISGKLNQWCSQCELGFCFRPYW*

****************CGVETDFNDDMPHLLSFNLSSGGFDFVVASLMDPNYR****************FAGSDLVLSPSQWSSHVVGKISSWIDLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPKGASCANYARCVNQILQSLNNMQLWLRIPLVKNDDDTMDFIPSGDSWELWNSFRLLCEHHSQLSVALDVLSSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKLITGFLNHSIQVVISGKLNQWCSQCELGFCFRPYWY

************ESRYCGVETDFNDDMPHLLSFNLSSGGFDFVVASLMDPNYRPSLMEKDIGGGSHVLSFAGSDLVLSPSQWSSHVVGKISSWIDLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPKGASCANYARCVNQILQSLNNMQLWLRIPLVKNDDDTMDFIPSGDSWELWNSFRLLCEHHSQLSVALDVLSSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKLITGFLNHSIQVVISGKLNQWCSQCELGFCFRPYWY

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		280	2.2.26 [Sep-21-2011]
Q8GWT4		642	Protein arginine N-methyl	yes	no	0.928	0.404	0.756	1e-116
Q6YXZ7		649	Protein arginine N-methyl	yes	no	0.921	0.397	0.664	2e-97
A2X0Q3		649	Protein arginine N-methyl	N/A	no	0.921	0.397	0.660	4e-97
Q54KI3		642	Protein arginine N-methyl	yes	no	0.85	0.370	0.417	3e-47
Q5R698		637	Protein arginine N-methyl	yes	no	0.796	0.350	0.347	8e-36
A7YW45		637	Protein arginine N-methyl	yes	no	0.796	0.350	0.347	1e-35
O14744		637	Protein arginine N-methyl	yes	no	0.796	0.350	0.343	2e-35
Q4R5M3		637	Protein arginine N-methyl	N/A	no	0.785	0.345	0.359	3e-35
Q8CIG8		637	Protein arginine N-methyl	yes	no	0.796	0.350	0.338	1e-34
P78963		645	Protein arginine N-methyl	yes	no	0.757	0.328	0.261	8e-20

>sp\|Q8GWT4\|ANM15_ARATH Protein arginine N-methyltransferase 1.5 OS=Arabidopsis thaliana GN=PMRT15 PE=1 SV=2	Back alignment and function desciption

 Score =  418 bits (1075), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/263 (75%), Positives = 232/263 (88%), Gaps = 3/263 (1%)

Query: 1   MALGERGGWDKSESRYCGVETDFNDDMPHLLSFNLSSGGFDFVVASLMDPNYRPSLMEKD 60
           M LGERGGW+++ESRYCGVETDF++D+ HLL+FN+S+GGFD+V+A L+DP+YRPSL+E +
Sbjct: 1   MPLGERGGWERTESRYCGVETDFSNDVTHLLNFNISTGGFDYVLAPLVDPSYRPSLVEGN 60

Query: 61  IGGGSHVLSFAGSDLVLSPSQWSSHVVGKISSWIDLDSEDEILRMDSETTLKQEISWASH 120
            G  + VL   GSDLVLSPSQWSSHVVGKISSWIDLDSEDE+LRMDSETTLKQEI+WA+H
Sbjct: 61  -GVDTQVLPVCGSDLVLSPSQWSSHVVGKISSWIDLDSEDEVLRMDSETTLKQEIAWATH 119

Query: 121 LSLQACLLPSPKGASCANYARCVNQILQSLNNMQLWLRIPLVKNDDDTMDFIPSG--DSW 178
           LSLQACLLP+PKG SCANYARCVNQILQ L  +QLWLR+PLVK++ D+MD    G  DSW
Sbjct: 120 LSLQACLLPTPKGKSCANYARCVNQILQGLTTLQLWLRVPLVKSEGDSMDDTSEGLNDSW 179

Query: 179 ELWNSFRLLCEHHSQLSVALDVLSSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGYPCL 238
           ELWNSFRLLCEH S+LSVALDVLS+LPS  SLGRW+GE VRAAI+ TD+FLTNARGYPCL
Sbjct: 180 ELWNSFRLLCEHDSKLSVALDVLSTLPSETSLGRWMGESVRAAILSTDAFLTNARGYPCL 239

Query: 239 SRRHQKLITGFLNHSIQVVISGK 261
           S+RHQKLI GF +H+ QVVI GK
Sbjct: 240 SKRHQKLIAGFFDHAAQVVICGK 262

Methylates arginine residues of myelin basic protein (MBP) in vitro. Methylates symmetrically histone H4 of the FLC chromatin to form H4R3me2s, which in turn suppresses FLC expression to induce flowering.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2EC: 5

>sp\|Q6YXZ7\|ANM5_ORYSJ Protein arginine N-methyltransferase 5 OS=Oryza sativa subsp. japonica GN=PRMT5 PE=2 SV=1	Back alignment and function description

>sp\|A2X0Q3\|ANM5_ORYSI Protein arginine N-methyltransferase 5 OS=Oryza sativa subsp. indica GN=PRMT5 PE=2 SV=2	Back alignment and function description

>sp\|Q54KI3\|ANM5_DICDI Protein arginine N-methyltransferase 5 OS=Dictyostelium discoideum GN=prmt5 PE=3 SV=1	Back alignment and function description

>sp\|Q5R698\|ANM5_PONAB Protein arginine N-methyltransferase 5 OS=Pongo abelii GN=PRMT5 PE=2 SV=3	Back alignment and function description

>sp\|A7YW45\|ANM5_BOVIN Protein arginine N-methyltransferase 5 OS=Bos taurus GN=PRMT5 PE=2 SV=1	Back alignment and function description

>sp\|O14744\|ANM5_HUMAN Protein arginine N-methyltransferase 5 OS=Homo sapiens GN=PRMT5 PE=1 SV=4	Back alignment and function description

>sp\|Q4R5M3\|ANM5_MACFA Protein arginine N-methyltransferase 5 OS=Macaca fascicularis GN=PRMT5 PE=2 SV=3	Back alignment and function description

>sp\|Q8CIG8\|ANM5_MOUSE Protein arginine N-methyltransferase 5 OS=Mus musculus GN=Prmt5 PE=1 SV=3	Back alignment and function description

>sp\|P78963\|SKB1_SCHPO Protein arginine N-methyltransferase skb1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=skb1 PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		280
224142725		645	predicted protein [Populus trichocarpa]	0.903	0.392	0.800	1e-119
356507805		643	PREDICTED: protein arginine N-methyltran	0.921	0.401	0.809	1e-118
297798860		643	Skb1 methyltransferase family protein [A	0.928	0.404	0.756	1e-115
42573101		584	protein arginine N-methyltransferase 5 [	0.928	0.445	0.756	1e-115
356515519		643	PREDICTED: protein arginine N-methyltran	0.921	0.401	0.790	1e-115
26452316		510	putative kinase binding protein [Arabido	0.928	0.509	0.756	1e-115
449437090		649	PREDICTED: protein arginine N-methyltran	0.925	0.399	0.794	1e-115
30688918		642	protein arginine N-methyltransferase 5 [	0.928	0.404	0.756	1e-114
225429888		644	PREDICTED: protein arginine N-methyltran	0.925	0.402	0.783	1e-114
296081820		650	unnamed protein product [Vitis vinifera]	0.925	0.398	0.783	1e-114

>gi\|224142725\|ref\|XP_002324705.1\| predicted protein [Populus trichocarpa] gi\|222866139\|gb\|EEF03270.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/266 (80%), Positives = 231/266 (86%), Gaps = 13/266 (4%)

Query: 1   MALGERGGWDKSESRYCGVETDFNDDMPHLLSFNLSSGGFDFVVASLMDPNYRPSLMEKD 60
           M LGE+ G++KS+SRYCGVET+FNDD P LL+FNLS+G FDFVVA LM+P YRPSL+EKD
Sbjct: 1   MPLGEKAGFEKSQSRYCGVETEFNDDFPQLLNFNLSTGSFDFVVAPLMNPTYRPSLLEKD 60

Query: 61  IGGGSHVLSFAGSDLVLSPSQWSSHVVGKISSWIDLDSEDEILRMDSETTLKQEISWASH 120
                 VL FA SDLVLSPSQWSSHVVGKISSWIDLDSEDE LRMDSETTLKQEI+WA+H
Sbjct: 61  -----GVLPFAASDLVLSPSQWSSHVVGKISSWIDLDSEDEALRMDSETTLKQEIAWANH 115

Query: 121 LSLQACLLPSPKGASCANYARCVNQILQSLNNMQLWLRIPLVKNDDDTMD-----FIPSG 175
           LS+QAC+LP PKGASCANYARCVNQILQ LNNMQLWLRIPLVK DDD MD     FI   
Sbjct: 116 LSVQACILPPPKGASCANYARCVNQILQGLNNMQLWLRIPLVKTDDDAMDANSTSFI--- 172

Query: 176 DSWELWNSFRLLCEHHSQLSVALDVLSSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGY 235
           DSWELWNSFRLLCEHH QLS+ALD+LSSLPS NSLGRW GE V AAII+TDSFLTN RGY
Sbjct: 173 DSWELWNSFRLLCEHHGQLSIALDILSSLPSVNSLGRWFGETVAAAIINTDSFLTNGRGY 232

Query: 236 PCLSRRHQKLITGFLNHSIQVVISGK 261
           PCLS+RHQKLITGF NHSIQ+VISGK
Sbjct: 233 PCLSKRHQKLITGFFNHSIQIVISGK 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356507805\|ref\|XP_003522654.1\| PREDICTED: protein arginine N-methyltransferase 1.5-like [Glycine max]	Back alignment and taxonomy information

>gi\|297798860\|ref\|XP_002867314.1\| Skb1 methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi\|297313150\|gb\|EFH43573.1\| Skb1 methyltransferase family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|42573101\|ref\|NP_974647.1\| protein arginine N-methyltransferase 5 [Arabidopsis thaliana] gi\|332660461\|gb\|AEE85861.1\| protein arginine N-methyltransferase 5 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356515519\|ref\|XP_003526447.1\| PREDICTED: protein arginine N-methyltransferase 1.5-like [Glycine max]	Back alignment and taxonomy information

>gi\|26452316\|dbj\|BAC43244.1\| putative kinase binding protein [Arabidopsis thaliana] gi\|29028926\|gb\|AAO64842.1\| At4g31120 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449437090\|ref\|XP_004136325.1\| PREDICTED: protein arginine N-methyltransferase 1.5-like [Cucumis sativus] gi\|449505498\|ref\|XP_004162489.1\| PREDICTED: protein arginine N-methyltransferase 1.5-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|30688918\|ref\|NP_194841.2\| protein arginine N-methyltransferase 5 [Arabidopsis thaliana] gi\|152013352\|sp\|Q8GWT4.2\|ANM15_ARATH RecName: Full=Protein arginine N-methyltransferase 1.5; Short=AtPMRT15; Short=AtPMRT5; AltName: Full=Shk1 kinase-binding protein 1 homolog gi\|332660460\|gb\|AEE85860.1\| protein arginine N-methyltransferase 5 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|225429888\|ref\|XP_002283571.1\| PREDICTED: protein arginine N-methyltransferase 1.5-like isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296081820\|emb\|CBI20825.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		280
TAIR\|locus:2126276		642	SKB1 "SHK1 binding protein 1"	0.928	0.404	0.756	2.4e-108
UNIPROTKB\|Q5R698		637	PRMT5 "Protein arginine N-meth	0.9	0.395	0.340	4.1e-35
UNIPROTKB\|Q4R5M3		637	PRMT5 "Protein arginine N-meth	0.889	0.390	0.351	5.2e-35
UNIPROTKB\|A7YW45		637	PRMT5 "Protein arginine N-meth	0.9	0.395	0.340	6.7e-35
UNIPROTKB\|F1N443		637	PRMT5 "Protein arginine N-meth	0.9	0.395	0.340	6.7e-35
UNIPROTKB\|O14744		637	PRMT5 "Protein arginine N-meth	0.9	0.395	0.336	8.7e-35
UNIPROTKB\|E2R9J8		637	PRMT5 "Uncharacterized protein	0.9	0.395	0.336	1.4e-34
UNIPROTKB\|C3RZ98		637	PRMT5 "Uncharacterized protein	0.9	0.395	0.336	1.4e-34
RGD\|1309053		637	Prmt5 "protein arginine methyl	0.9	0.395	0.333	2.4e-34
ZFIN\|ZDB-GENE-030616-585		631	prmt5 "protein arginine methyl	0.785	0.348	0.355	8.2e-34

TAIR\|locus:2126276 SKB1 "SHK1 binding protein 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1071 (382.1 bits), Expect = 2.4e-108, P = 2.4e-108
 Identities = 199/263 (75%), Positives = 232/263 (88%)

Query:     1 MALGERGGWDKSESRYCGVETDFNDDMPHLLSFNLSSGGFDFVVASLMDPNYRPSLMEKD 60
             M LGERGGW+++ESRYCGVETDF++D+ HLL+FN+S+GGFD+V+A L+DP+YRPSL+E +
Sbjct:     1 MPLGERGGWERTESRYCGVETDFSNDVTHLLNFNISTGGFDYVLAPLVDPSYRPSLVEGN 60

Query:    61 IGGGSHVLSFAGSDLVLSPSQWSSHVVGKISSWIDLDSEDEILRMDSETTLKQEISWASH 120
              G  + VL   GSDLVLSPSQWSSHVVGKISSWIDLDSEDE+LRMDSETTLKQEI+WA+H
Sbjct:    61 -GVDTQVLPVCGSDLVLSPSQWSSHVVGKISSWIDLDSEDEVLRMDSETTLKQEIAWATH 119

Query:   121 LSLQACLLPSPKGASCANYARCVNQILQSLNNMQLWLRIPLVKNDDDTMDFIPSG--DSW 178
             LSLQACLLP+PKG SCANYARCVNQILQ L  +QLWLR+PLVK++ D+MD    G  DSW
Sbjct:   120 LSLQACLLPTPKGKSCANYARCVNQILQGLTTLQLWLRVPLVKSEGDSMDDTSEGLNDSW 179

Query:   179 ELWNSFRLLCEHHSQLSVALDVLSSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGYPCL 238
             ELWNSFRLLCEH S+LSVALDVLS+LPS  SLGRW+GE VRAAI+ TD+FLTNARGYPCL
Sbjct:   180 ELWNSFRLLCEHDSKLSVALDVLSTLPSETSLGRWMGESVRAAILSTDAFLTNARGYPCL 239

Query:   239 SRRHQKLITGFLNHSIQVVISGK 261
             S+RHQKLI GF +H+ QVVI GK
Sbjct:   240 SKRHQKLIAGFFDHAAQVVICGK 262

GO:0005737 "cytoplasm" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=ISS;IDA

GO:0009909 "regulation of flower development" evidence=RCA;IMP

GO:0010220 "positive regulation of vernalization response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010074 "maintenance of meristem identity" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

UNIPROTKB\|Q5R698 PRMT5 "Protein arginine N-methyltransferase 5" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4R5M3 PRMT5 "Protein arginine N-methyltransferase 5" [Macaca fascicularis (taxid:9541)]	Back alignment and assigned GO terms

UNIPROTKB\|A7YW45 PRMT5 "Protein arginine N-methyltransferase 5" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N443 PRMT5 "Protein arginine N-methyltransferase 5" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|O14744 PRMT5 "Protein arginine N-methyltransferase 5" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R9J8 PRMT5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|C3RZ98 PRMT5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

RGD\|1309053 Prmt5 "protein arginine methyltransferase 5" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030616-585 prmt5 "protein arginine methyltransferase 5" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GWT4	ANM15_ARATH	2, ., 1, ., 1, ., 1, 2, 5	0.7566	0.9285	0.4049	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.766
4th Layer	2.1.1.125	0.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		280
pfam05185		445	pfam05185, PRMT5, PRMT5 arginine-N-methyltransfera	4e-32

>gnl\|CDD\|218484 pfam05185, PRMT5, PRMT5 arginine-N-methyltransferase	Back alignment and domain information

 Score =  122 bits (309), Expect = 4e-32
 Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 1/89 (1%)

Query: 176 DSWELWNSFRLLCEHHSQLSVALDVLSSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGY 235
            +WELWN+ R LC +   L VAL++   LPS   L RWL EPV+A I+ +  FLTN +GY
Sbjct: 4   STWELWNTIRTLCNYSPNLKVALELPRDLPSKEVLERWLAEPVKALILSSSIFLTNQKGY 63

Query: 236 PCLSRRHQKLITGFL-NHSIQVVISGKLN 263
           P LS+ HQ L+T F   ++  +++ G+L 
Sbjct: 64  PVLSKAHQALLTRFFRLNNPIILLLGELG 92

The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes. Length = 445

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		280
KOG0822		649	consensus Protein kinase inhibitor [Cell cycle con	100.0
PF05185		448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	99.96
PTZ00372		413	endonuclease 4-like protein; Provisional	97.86
TIGR00587		274	nfo apurinic endonuclease (APN1). All proteins in	97.65
COG0648		280	Nfo Endonuclease IV [DNA replication, recombinatio	97.15
smart00518		273	AP2Ec AP endonuclease family 2. These endonuclease	96.83
PRK01060		281	endonuclease IV; Provisional	96.29
cd00019		279	AP2Ec AP endonuclease family 2; These endonuclease	95.5
PRK02308		303	uvsE putative UV damage endonuclease; Provisional	89.12
PRK13210		284	putative L-xylulose 5-phosphate 3-epimerase; Revie	86.31
PRK13209		283	L-xylulose 5-phosphate 3-epimerase; Reviewed	83.41
COG3623		287	SgaU Putative L-xylulose-5-phosphate 3-epimerase [	80.84

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=6e-59  Score=451.64  Aligned_cols=260  Identities=37%  Similarity=0.622  Sum_probs=226.1

Q ss_pred             CCCCCCCCCCCCCceeeecccCCCCChHHHHHhhhccCCCcEEEeccCCCCCCCccccccCCCCCCCCCCCCCCcccCCC
Q 047961            1 MALGERGGWDKSESRYCGVETDFNDDMPHLLSFNLSSGGFDFVVASLMDPNYRPSLMEKDIGGGSHVLSFAGSDLVLSPS   80 (280)
Q Consensus         1 m~~~~~~~~~~~~~~~~G~~~~~~~dl~~~l~~a~~~~gydfv~~PIt~~~~~~~~~~~d~~~~~~~~p~~~sD~~L~~~   80 (280)
                      ||.....||+..++.++|...++.+++...++......|||||+.|+.+|.+|++..++ ....++.+|++++|+.|.++
T Consensus         7 mp~~~~~~~e~~nSr~~~~~~~~s~e~a~~l~~~v~~~~f~fv~~P~f~~~~r~~~~~~-~~~~~~~~~~~~~dv~l~~~   85 (649)
T KOG0822|consen    7 MPVYSIGGHERVNSRFLGNVSSCSPEVASNLDYNVATIGFNFVVGPVFGPFQRQNWVPE-QIPENQLQPICIPDVKLSGS   85 (649)
T ss_pred             ccccccCCcccccccccccccccCchhhhhccceeeccceeeEeecccCchhhhccccc-CCCcCCCCCccchhheeCcc
Confidence            67777888888889999999999999999999555589999999999999999873321 12335688999999999999


Q ss_pred             CCcceEEEEecCCCCCCCccHHHHHhHHHHHHHHHHHHhhcCcceeeecCCCCCChhHHHHHHHHHH-hhcCcceEEEEE
Q 047961           81 QWSSHVVGKISSWIDLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPKGASCANYARCVNQIL-QSLNNMQLWLRI  159 (280)
Q Consensus        81 ~w~s~vVg~~S~WidlDS~d~~ir~~S~~~L~~El~yA~~lgl~aviip~P~~~~~~~yAr~i~~~l-~~~~~~~iwI~l  159 (280)
                      +|+++|||++|+||||||+||.+|+.||++|++|++||+|||++.+++++| +....|+||++.... +..+..   ++|
T Consensus        86 dw~s~vVGk~S~Wi~lDS~d~~ir~~seevll~E~~ya~ylgl~~~~l~l~-~~d~~nla~i~~~~~~t~~ns~---~~v  161 (649)
T KOG0822|consen   86 DWNSKVVGKLSSWIELDSEDPKIRDLSEEVLLKELSYARYLGLQKLILALP-RRDNTNLARILQNIIRTLQNSF---MRV  161 (649)
T ss_pred             cCcceeEEeecccccCCCCChHHHHhHHHHHHHHHHHHHHcCccceecCCC-CCCchhHHHHHHHHHHhccCce---eEe
Confidence            999999999999999999999999999999999999999999999999996 457889999997655 333322   677


Q ss_pred             ecccC----CCCCCCCCC-CCChHHHHHHHHHHhcCCCccEEEEEcc-CCCCChhhhhhhcccCceEEEEeCCccccCCC
Q 047961          160 PLVKN----DDDTMDFIP-SGDSWELWNSFRLLCEHHSQLSVALDVL-SSLPSANSLGRWLGEPVRAAIIHTDSFLTNAR  233 (280)
Q Consensus       160 P~~~~----~~~~~~~~~-~~~~W~~Wn~iR~lc~y~~~L~VaL~l~-~~lP~~~~~~RWl~EPV~~lii~ts~F~tN~k  233 (280)
                      |...+    ..+....+. ..++|++||+||++|+|+++|+|||+|+ +++|++++++||+||||+|++|++++|++|++
T Consensus       162 ~~a~p~i~~a~~~~~~e~e~~dtW~~Wn~~R~~C~y~~~l~VaLel~~a~~Ps~~lv~RWlaEPi~a~iisss~FvsN~~  241 (649)
T KOG0822|consen  162 PFAAPAIEIAIDSPLEEYEGNDTWELWNTFRKLCEYHPRLKVALELPRADLPSEELVDRWLAEPIEAIIISSSIFVSNRN  241 (649)
T ss_pred             eecchhhhhcccccccccccccHHHHHHHHHHHhCcCCceEEEEecCcccCCcHHHHhhhhccchhheeeecceeeeCCC
Confidence            76643    112111111 4689999999999999999999999999 99999999999999999999999999999999


Q ss_pred             CCcccCHHHHHHHHHHHhcCceEEEeccCCCC
Q 047961          234 GYPCLSRRHQKLITGFLNHSIQVVISGKLNQW  265 (280)
Q Consensus       234 GyPVLsK~hQ~~i~~~~r~~~~iil~g~~~~~  265 (280)
                      |||||+|+||.+|.+|+++++|+||.|+..|.
T Consensus       242 gypvL~k~~q~li~~f~~~~a~~iI~~n~~~~  273 (649)
T KOG0822|consen  242 GYPVLSKFHQNLIAHFLKVNAQIIILGNPLDV  273 (649)
T ss_pred             CCccccHHHHHHHHHHHhccccEEEeCCCcch
Confidence            99999999999999999999999999999983

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []	Back alignment and domain information

>PTZ00372 endonuclease 4-like protein; Provisional	Back alignment and domain information

>TIGR00587 nfo apurinic endonuclease (APN1)	Back alignment and domain information

>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]	Back alignment and domain information

>smart00518 AP2Ec AP endonuclease family 2	Back alignment and domain information

>PRK01060 endonuclease IV; Provisional	Back alignment and domain information

>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair	Back alignment and domain information

>PRK02308 uvsE putative UV damage endonuclease; Provisional	Back alignment and domain information

>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed	Back alignment and domain information

>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed	Back alignment and domain information

>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		280
4gqb_A		637	Crystal Structure Of The Human Prmt5:mep50 Complex		1e-36
4g56_A		657	Crystal Structure Of Full Length Prmt5/mep50 Comple		4e-34
3ua4_A		745	Crystal Structure Of Protein Arginine Methyltransfe		4e-13
3ua3_A		745	Crystal Structure Of Protein Arginine Methyltransfe		5e-13

>pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 637

Back alignment and structure

Iteration: 1

Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 138/239 (57%), Gaps = 16/239 (6%) Query: 35 LSSGGFDFVVASLMDPNYRPSLMEKDIGGGSHVLSFAGSDLVLSPSQWSSHVVGKISSWI 94 ++ GFDF+ + P ++ +++ + SDL+LS W++ +VGK+S WI Sbjct: 33 VAKQGFDFLCMPVFHPRFKREFIQEPAKNRPGPQT--RSDLLLSGRDWNTLIVGKLSPWI 90 Query: 95 DLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPKGASCANYARCV-NQILQSLNNM 153 DS+ E +R +SE + QE+++ ++L L A LLP + + N AR + N I ++ Sbjct: 91 RPDSKVEKIRRNSEAAMLQELNFGAYLGLPAFLLPLNQEDN-TNLARVLTNHIHTGHHSS 149 Query: 154 QLWLRIPLVKNDDDTMDFIPSG------------DSWELWNSFRLLCEHHSQLSVALDVL 201 W+R+PLV +D D I + +W W++FR LC++ +++VAL++ Sbjct: 150 MFWMRVPLVAPEDLRDDIIENAPTTHTEEYSGEEKTWMWWHNFRTLCDYSKRIAVALEIG 209 Query: 202 SSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKLITGFLNHSIQVVISG 260 + LPS + + RWLGEP++AAI+ T FLTN +G+P LS+ HQ+LI L +Q +I+G Sbjct: 210 ADLPSNHVIDRWLGEPIKAAILPTSIFLTNKKGFPVLSKMHQRLIFRLLKLEVQFIITG 268

PyMOL of 4gqb

>pdb|4G56|A Chain A, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 657

Back alignment and structure

>pdb|3UA4|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase Prmt5 Length = 745

Back alignment and structure

>pdb|3UA3|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase Prmt5 In Complex With Sah Length = 745

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		280
3ua3_A		745	Protein arginine N-methyltransferase 5; TIM-barrel	2e-72

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A Length = 745	Back alignment and structure

 Score =  235 bits (599), Expect = 2e-72
 Identities = 54/234 (23%), Positives = 89/234 (38%), Gaps = 10/234 (4%)

Query: 35  LSSGGFDFVVASLMDPNYRPSLMEKDIGGGSHVLSFAGSDLVLSPSQWSSHVVGKISSWI 94
           L    ++FVV  +                 +H       D+ L    W S+VVGKIS WI
Sbjct: 77  LGEFKYNFVVYPIGGVVRAFWTPNGS--AENHPPVIDLPDVQLRNDLWESYVVGKISPWI 134

Query: 95  DLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPKGASCANYARCVNQILQSLNNMQ 154
           D DS D      SE  L +E+S+  +L LQ   +   + +S    A     I    +   
Sbjct: 135 DCDSSDPAFASLSEEHLLKELSYICYLGLQTMAIELTRISSPRTAAILKKWIWTRNSRFT 194

Query: 155 LWLRIPLVKNDDDTMDFIPSG--DSWELWNSFRLLCEHHSQ------LSVALDVLSSLPS 206
           +W+++P         D       D W +W  FR  C + S       L+++ ++   L  
Sbjct: 195 VWVQLPSAIEKCKDYDAFTIEHVDLWTIWADFRKNCGNFSGVYFQVALTISSELPDELTE 254

Query: 207 ANSLGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKLITGFLNHSIQVVISG 260
              + RW  EP+ A +I +  F++   G   +   H  L+          ++  
Sbjct: 255 LKLVDRWKAEPLAAFVIESGLFISGRNGEASIPSAHINLLKHLWTTDALRIVLR 308

PyMOL of 3ua3

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		280
4gqb_A		637	Protein arginine N-methyltransferase 5; TIM barrel	100.0
3ua3_A		745	Protein arginine N-methyltransferase 5; TIM-barrel	100.0
1qtw_A		285	Endonuclease IV; DNA repair enzyme, TIM barrel, tr	95.64
3aal_A		303	Probable endonuclease 4; endoiv, DNA repair, base	95.63
2x7v_A		287	Probable endonuclease 4; DNA repair protein, metal	94.19
3aam_A		270	Endonuclease IV, endoiv; DNA repair, base excision	93.11
3ayv_A		254	Putative uncharacterized protein TTHB071; structur	90.63
3kws_A		287	Putative sugar isomerase; structural genomics, joi	90.32
3ktc_A		333	Xylose isomerase; putative sugar isomerase, struct	87.67
2j6v_A		301	UV endonuclease, UVDE; plasmid, TIM barrel, DNA re	87.44
1i60_A		278	IOLI protein; beta barrel, structural genomics, PS	86.4
3m0m_A		438	L-rhamnose isomerase; beta/alpha barrel, HOMO-tetr	86.18
2hk0_A		309	D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00	81.5
1a0c_A		438	Xylose isomerase; ketolisomerase, xylose metabolis	80.19

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*	Back alignment and structure

Probab=100.00  E-value=2.1e-70  Score=552.97  Aligned_cols=257  Identities=33%  Similarity=0.647  Sum_probs=224.4

Q ss_pred             CCCCCCCCCCCCCceeeecccCCCCChHHHHHhhhccCCCcEEEeccCCCCCCCccccccCCCCCCCCCCCCCCcccCCC
Q 047961            1 MALGERGGWDKSESRYCGVETDFNDDMPHLLSFNLSSGGFDFVVASLMDPNYRPSLMEKDIGGGSHVLSFAGSDLVLSPS   80 (280)
Q Consensus         1 m~~~~~~~~~~~~~~~~G~~~~~~~dl~~~l~~a~~~~gydfv~~PIt~~~~~~~~~~~d~~~~~~~~p~~~sD~~L~~~   80 (280)
                      |+++...|    .+++||+++++++|+.++++.|. +.|||||++|||||+||++...+  ....+.+||+++|+.|+++
T Consensus         4 ~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~a~-~~g~d~v~~pi~~~~~~~~~~~~--~~~~~~~p~~~~d~~l~~~   76 (637)
T 4gqb_A            4 MAVGGAGG----SRVSSGRDLNCVPEIADTLGAVA-KQGFDFLCMPVFHPRFKREFIQE--PAKNRPGPQTRSDLLLSGR   76 (637)
T ss_dssp             -------------CCCEEEECSCCSSHHHHHHHHH-HTTCSEEEEESSCTTCCCCSSST--TGGGCCSCSSCCGGGSCHH
T ss_pred             cccCcCCC----CceEEEeeccCCccHHHHHHHHH-HCCCCEEEeccCChhhhhHHhhc--ccccCCCCCCccceeeCcc
Confidence            55555554    78999999999999999999999 99999999999999999985421  1223577999999999999


Q ss_pred             CCcceEEEEecCCCCCCCccHHHHHhHHHHHHHHHHHHhhcCcceeeecCCCCCChhHHHHHHHHHHhhcCc-ceEEEEE
Q 047961           81 QWSSHVVGKISSWIDLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPKGASCANYARCVNQILQSLNN-MQLWLRI  159 (280)
Q Consensus        81 ~w~s~vVg~~S~WidlDS~d~~ir~~S~~~L~~El~yA~~lgl~aviip~P~~~~~~~yAr~i~~~l~~~~~-~~iwI~l  159 (280)
                      +|+++|||++|+||||||+||.+|..||++|++||+||+|||+++||||+|+ .+++||||+|++.++..++ .++||+|
T Consensus        77 ~~~~~vvg~~S~wi~~ds~~~~~~~~s~~~l~~El~~a~~~g~~~~iip~~~-~~~~~~ar~i~~~l~~~~~~~~~~i~~  155 (637)
T 4gqb_A           77 DWNTLIVGKLSPWIRPDSKVEKIRRNSEAAMLQELNFGAYLGLPAFLLPLNQ-EDNTNLARVLTNHIHTGHHSSMFWMRV  155 (637)
T ss_dssp             HHHHHEEEECCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCSEEEEECCS-SCCHHHHHHHHHHHTSSCCCCEEEEEE
T ss_pred             cccceEEEEECCCcCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCEEEECCCC-ccchHHHHHHHHHHhcCCCceeEEEEE
Confidence            9999999999999999999999999999999999999999999999999974 5789999999999976555 5699999


Q ss_pred             ecccCCC---CCCCC---------CCCCChHHHHHHHHHHhcCCCccEEEEEccCCCCChhhhhhhcccCceEEEEeCCc
Q 047961          160 PLVKNDD---DTMDF---------IPSGDSWELWNSFRLLCEHHSQLSVALDVLSSLPSANSLGRWLGEPVRAAIIHTDS  227 (280)
Q Consensus       160 P~~~~~~---~~~~~---------~~~~~~W~~Wn~iR~lc~y~~~L~VaL~l~~~lP~~~~~~RWl~EPV~~lii~ts~  227 (280)
                      ||+.+..   +..+.         ++..++|++||+||++|+||+||+|+|+|++++|+.++++||+||||+|++|++++
T Consensus       156 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~W~~~r~~c~~~~~l~v~L~l~~~~p~~~~~~rW~~EPv~~l~i~~~~  235 (637)
T 4gqb_A          156 PLVAPEDLRDDIIENAPTTHTEEYSGEEKTWMWWHNFRTLCDYSKRIAVALEIGADLPSNHVIDRWLGEPIKAAILPTSI  235 (637)
T ss_dssp             ESSCHHHHCCSCBTTSCCCCSCCTTGGGHHHHHHHHHHHHTTTCTTEEEEEECCSSCCCHHHHHTTTTSCEEEEEEEGGG
T ss_pred             EccCCccccccccccccccccccccCcccHHHHHHHHHHHhCCCCceEEEEEcCCCCCCHHHHHHHhcCCeeEEEEchhh
Confidence            9986521   11110         01457999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCcccCHHHHHHHHHHHhcCceEEEeccCCCC
Q 047961          228 FLTNARGYPCLSRRHQKLITGFLNHSIQVVISGKLNQW  265 (280)
Q Consensus       228 F~tN~kGyPVLsK~hQ~~i~~~~r~~~~iil~g~~~~~  265 (280)
                      |++|+||||||+|+||+||++|||+++++||+|..+|.
T Consensus       236 F~~n~~g~pvL~k~hq~~i~~~~~~~~~~il~~~~~~~  273 (637)
T 4gqb_A          236 FLTNKKGFPVLSKMHQRLIFRLLKLEVQFIITGTNHHS  273 (637)
T ss_dssp             CEECTTSCEECCHHHHHHHHHHHHTTCEEEEESCCSSG
T ss_pred             cccCCCCCcCCCHHHHHHHHHHHhCCCeEEEecCCccC
Confidence            99999999999999999999999999999999998886

PyMOL of 4gqb

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A	Back alignment and structure

>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*	Back alignment and structure

>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A	Back alignment and structure

>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*	Back alignment and structure

>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}	Back alignment and structure

>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A	Back alignment and structure

>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}	Back alignment and structure

>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}	Back alignment and structure

>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A	Back alignment and structure

>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A	Back alignment and structure

>3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM isomerase; HET: AOS; 1.45A {Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A* 3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A* 4gji_A* 4gjj_A*	Back alignment and structure

>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*	Back alignment and structure

>1a0c_A Xylose isomerase; ketolisomerase, xylose metabolism, glucose-fructose interconversion, hydride transfer; 2.50A {Thermoanaerobacteriumthermosulfurigenes} SCOP: c.1.15.3 PDB: 1a0d_A 1a0e_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		280
d1qtwa_		285	Endonuclease IV {Escherichia coli [TaxId: 562]}	97.84
d1xp3a1		297	Endonuclease IV {Bacillus anthracis [TaxId: 1392]}	97.07
d1i60a_		278	Hypothetical protein IolI {Bacillus subtilis [TaxI	82.85

>d1qtwa_ c.1.15.1 (A:) Endonuclease IV {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: Endonuclease IV
domain: Endonuclease IV
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=0.0002  Score=61.07  Aligned_cols=196  Identities=13%  Similarity=0.082  Sum_probs=119.6

Q ss_pred             eeeecccCCCCChHHHHHhhhccCCCcEEEeccCCCC-CCCcc-ccccCCCCCCCCCCCCCCcccCCCCCcceEEEEecC
Q 047961           15 RYCGVETDFNDDMPHLLSFNLSSGGFDFVVASLMDPN-YRPSL-MEKDIGGGSHVLSFAGSDLVLSPSQWSSHVVGKISS   92 (280)
Q Consensus        15 ~~~G~~~~~~~dl~~~l~~a~~~~gydfv~~PIt~~~-~~~~~-~~~d~~~~~~~~p~~~sD~~L~~~~w~s~vVg~~S~   92 (280)
                      .++|.|.+....+.++++.+. +.|||-|=+.+.+|+ |+... ..++..   .   + + ++.-........+.+...-
T Consensus         2 ~~~~~h~s~~~~l~~a~~~a~-e~G~~~ieif~~~P~~w~~~~~~~~~~~---~---~-k-~~~~~~gl~~~~~~~~~p~   72 (285)
T d1qtwa_           2 KYIGAHVSAAGGLANAAIRAA-EIDATAFALFTKNQRQWRAAPLTTQTID---E---F-K-AACEKYHYTSAQILPHDSY   72 (285)
T ss_dssp             CEEEEECCCTTCHHHHHHHHH-HTTCSEEECCSSCSSCSSCCCCCHHHHH---H---H-H-HHHHHTTCCGGGBCCBCCT
T ss_pred             CcEEEEeccccCHHHHHHHHH-HcCCCEEEEECCCCCCCCCCCCCHHHHH---H---H-H-HHHHHcCCCcceeEecCCc
Confidence            589999987789999999999 999999999888887 33321 100000   0   0 0 0000000011112222223


Q ss_pred             CCCCCCccHHHHHhHHHHHHHHHHHHhhcCcceeeecCCCC----CC---hhHHHHHHHHHHhhcCcceEEEEEecccCC
Q 047961           93 WIDLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPKG----AS---CANYARCVNQILQSLNNMQLWLRIPLVKND  165 (280)
Q Consensus        93 WidlDS~d~~ir~~S~~~L~~El~yA~~lgl~aviip~P~~----~~---~~~yAr~i~~~l~~~~~~~iwI~lP~~~~~  165 (280)
                      .+++.|+|+.+|+.+.+.+++.++.|..||.+.+++.+...    ..   ....++.++........+.+-+  ......
T Consensus        73 ~~n~~~~~~~~r~~s~~~~~~~i~~a~~lG~~~vv~h~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~l--e~~~~~  150 (285)
T d1qtwa_          73 LINLGHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVTAVI--ENTAGQ  150 (285)
T ss_dssp             TCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCCBCTTTSCHHHHHHHHHHHHHHHHHHCSSCEEEE--ECCCCC
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHcCCCceeeeceeccCcccHHHHHHHHHHHHHHHHHhccCCeEEE--eecccc
Confidence            47899999999999999999999999999999999975321    11   2223444444444444444433  222111


Q ss_pred             CCCCCCCCCCChHHHHHHHHHHhcCCCccEEEEEccC------CCCChhhhhh--------hcccCceEEEEeCC
Q 047961          166 DDTMDFIPSGDSWELWNSFRLLCEHHSQLSVALDVLS------SLPSANSLGR--------WLGEPVRAAIIHTD  226 (280)
Q Consensus       166 ~~~~~~~~~~~~W~~Wn~iR~lc~y~~~L~VaL~l~~------~lP~~~~~~R--------Wl~EPV~~lii~ts  226 (280)
                      ...     ...+.+....+...+++.+++++.|+...      ++-+.....+        ..++=|+.+-+.-+
T Consensus       151 ~~~-----~~~~~~~~~~i~~~~~~~~~vgl~lD~~H~~~~G~d~~~~~~~~~~~~~~~~~~~~~~i~~vH~~D~  220 (285)
T d1qtwa_         151 GSN-----LGFKFEHLAAIIDGVEDKSRVGVCIDTCHAFAAGYDLRTPAECEKTFADFARTVGFKYLRGMHLNDA  220 (285)
T ss_dssp             TTB-----CCSSHHHHHHHHHHCSCGGGEEEEEEHHHHHHHTCCCSSHHHHHHHHHHHHHHTCGGGEEEEEECEE
T ss_pred             CCc-----CcCCHHHHHHHHHHhcccccceEecccchHHHcCCCcccHHHHHHHHHHHHHHhhhhhheEEeeccC
Confidence            000     22467766777777888899999999874      3333322222        34677888888654

PyMOL of d1qtwa_

>d1xp3a1 c.1.15.1 (A:2-298) Endonuclease IV {Bacillus anthracis [TaxId: 1392]}	Back information, alignment and structure

>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure