Citrus Sinensis ID: 047971

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370----
MAAPRPRSTRSTSLRDSDKLEGTACWDALEWTKIEPVTSSVSHANLDLLLDAERIVVEGYGVVLVNTDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKCATPARIWDIYAFSSGPSKCVNTNPKVRLLNEYFRLLGKSSSSATMDMIEEGSFTLSNELWRISDINSTYTMCQSYPFALIVPECIIDQELLQASSFRARYRLPVISWCHSGTGAVLARSSQPLVGLMMNMRSNADEKLVASLCTQLAGGKMSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESFARLRDYLDTHGTT
ccccccccccccccccccccccccccccccEEEccccccccccccccccccccEEEEEEcEEEEcccccEEEEEEEccEEEEEEccccccEEEEccccccEEEEEEEcEEccccccccccccccccEEEEEEEcEEEEEEEcccHHHHHHHHHHHHHHccccccccccEEEccccccccccccccccHHHHHHccccccccHHHHHHHcccccccccEEEEEcccccccccccccEEEEcccccHHHHHHHHcccccccccEEEEEcccccEEEEEcccccccccccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHcccccccccccccccccEEEEccccHHHHHHHHHHHHHHHcccccc
ccccccccccccEccccccccccccccHHccccccccccccccccccccccccEEEEccccEEEEcccccEEEEEEcEEEEEEEcccccccEEEEEcHHHHHHHHHcccccccccccccccccccEEEEEEcccEEEEEEEccccccHHHHHHHHHHHccccccHHHEEEEccccccccccHHHHHHcccccccccccHEEccHHHHHHHcccccccEEEEcccccccccccccccEEEEccccHHHHHHHHHHEHHHcccEEEEEccccccEEEEEccEccccccccccHHHHHHHHHHHHHccccccccccEEEEEcccHHHHHHHHccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHccccc
maaprprstrstslrdsdklegTACWDAlewtkiepvtssvshaNLDLLLDAERIVVEGYGVVLVNTDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIqstprqtdknpsrRLLQVIGkdmrivvfgfrpktkqRRAVYDALVKCAtpariwdiyafssgpskcvntnpkvRLLNEYFRLLGKSSSSATMDMIEEGSFTLSNELWRIsdinstytmcqsypfalivpeciidQELLQASSfraryrlpviswchsgtgavlarssqPLVGLMMNMRSNADEKLVASLCTQLaggkmsrrklyiadarprknalangamgggsesssnyfqSEIVFFGIDNIHAMRESFARLRDYLDTHGTT
maaprprstrstslrdsdklegTACWDALEWTKIEPVTSSVSHANLDLLLDAERIVVEGYGVVLvntdeagtLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKiqstprqtdknpsrrllqvigkdmrivvfgfrpktkqrraVYDALVKCATPARIWDIYAfssgpskcvntnpKVRLLNEYFRLLGKSSSSATMDMIEEGSFTLSNELWRISDINSTYTMCQSYPFALIVPECIIDQELLQASSFRARYRLPVISWCHSGTGAVLARSSQPLVGLMMNMRSNADEKLVASLCTQLAGGKMSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESFARLRDYLDTHGTT
MAAprprstrstslrdsdKLEGTACWDALEWTKIEPVTSSVSHANLDLLLDAERIVVEGYGVVLVNTDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKCATPARIWDIYAFSSGPSKCVNTNPKVRLLNEYFRLLGKSSSSATMDMIEEGSFTLSNELWRISDINSTYTMCQSYPFALIVPECIIDQELLQASSFRARYRLPVISWCHSGTGAVLARSSQPLVGLMMNMRSNADEKLVASLCTQLAGGKMSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESFARLRDYLDTHGTT
*********************GTACWDALEWTKIEPVTSSVSHANLDLLLDAERIVVEGYGVVLVNTDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVK***************LLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKCATPARIWDIYAFSSGPSKCVNTNPKVRLLNEYFRLLGK********MIEEGSFTLSNELWRISDINSTYTMCQSYPFALIVPECIIDQELLQASSFRARYRLPVISWCHSGTGAVLARSSQPLVGLMMNMR*NADEKLVASLCTQLAGGKMSRRKLYIA***********************YFQSEIVFFGIDNIHAMRESFARLRDYL******
***************************************************AERIVVEGYGVVLVNTDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVK************SRRLLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKCATPARIWDIYAFSSGPSKCVNTNPKVRLLNEYFRLLGKSSSSATMDMIEEGSFTLSNELWRISDINSTYTMCQSYPFALIVPECIIDQELLQASSFRARYRLPVISWCHSGTGAVLARSSQPL*******RSNADEKLVASLCTQLAGGKMSRRKLYIAD****************SESSSNYFQSEIVFFGIDNIHAMRESFARLRDYLDTH***
*****************DKLEGTACWDALEWTKIEPVTSSVSHANLDLLLDAERIVVEGYGVVLVNTDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVK***********PSRRLLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKCATPARIWDIYAFSSGPSKCVNTNPKVRLLNEYFRLLGKSSSSATMDMIEEGSFTLSNELWRISDINSTYTMCQSYPFALIVPECIIDQELLQASSFRARYRLPVISWCHSGTGAVLARSSQPLVGLMMNMRSNADEKLVASLCTQLAGGKMSRRKLYIADARPRKNALAN*********SSNYFQSEIVFFGIDNIHAMRESFARLRDYLDTHGTT
************************CWDALEWTKIEPVTSSVSHANLDLLLDAERIVVEGYGVVLVNTDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTD*NPSRRLLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKCATPARIWDIYAFSSGPSKCVNTNPKVRLLNEYFRLLGKSSSSATMDMIEEGSFTLSNELWRISDINSTYTMCQSYPFALIVPECIIDQELLQASSFRARYRLPVISWCHSGTGAVLARSSQPLVGLMMNMRSNADEKLVASLCTQLAGGKMSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESFARLRDYLDT****
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MAAPRPRSTRSTSLRDSDKLEGTACWDALEWTKIEPVTSSVSHANLDLLLDAERIVVEGYGVVLVNTDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKCATPARIWDIYAFSSGPSKCVNTNPKVRLLNEYFRLLGKSSSSATMDMIEEGSFTLSNELWRISDINSTYTMCQSYPFALIVPECIIDQELLQASSFRARYRLPVISWCHSGTGAVLARSSQPLVGLMMNMRSNADEKLVASLCTQLAGGKMSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESFARLRDYLDTHGTT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query374 2.2.26 [Sep-21-2011]
Q13614 643 Myotubularin-related prot yes no 0.708 0.412 0.336 8e-39
Q5REB9 643 Myotubularin-related prot yes no 0.708 0.412 0.333 2e-38
A6QLT2 643 Myotubularin-related prot yes no 0.708 0.412 0.333 3e-38
Q5ZIV1 571 Myotubularin-related prot yes no 0.708 0.464 0.336 5e-38
Q9Z2D1 643 Myotubularin-related prot yes no 0.708 0.412 0.333 9e-38
A0JMK5 620 Myotubularin-related prot no no 0.703 0.424 0.342 2e-36
Q9Z2C5 603 Myotubularin OS=Mus muscu no no 0.708 0.439 0.350 2e-36
Q5R9S3 603 Myotubularin OS=Pongo abe no no 0.708 0.439 0.336 7e-36
Q5EB32 602 Myotubularin OS=Xenopus t yes no 0.708 0.440 0.329 7e-36
Q52KU6 602 Myotubularin OS=Xenopus l N/A no 0.708 0.440 0.319 1e-35
>sp|Q13614|MTMR2_HUMAN Myotubularin-related protein 2 OS=Homo sapiens GN=MTMR2 PE=1 SV=4 Back     alignment and function desciption
 Score =  161 bits (407), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 156/297 (52%), Gaps = 32/297 (10%)

Query: 71  GTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVI 130
           GTL VTN+R+ F S   R+   +    L  I ++ K+          + +  +   L+ +
Sbjct: 103 GTLTVTNYRLYFKS-MERDPPFVLDASLGVINRVEKIG-------GASSRGENSYGLETV 154

Query: 131 GKDMRIVVFGFRPKTKQRRAVYDALVKCATP-ARIWDIYAFSSGPSKCVNTNPKVRLLNE 189
            KD+R + F  +P+ + RR++++ L+K A P +    ++AF                  E
Sbjct: 155 CKDIRNLRFAHKPEGRTRRSIFENLMKYAFPVSNNLPLFAF------------------E 196

Query: 190 YFRLLGKSSSSATMDMIEEGSFTLSNELWRISDINSTYTMCQSYPFALIVPECIIDQELL 249
           Y  +  ++       ++E     + NE WRI+ IN  Y +C +YP  L+VP  I D+EL 
Sbjct: 197 YKEVFPENGWKLYDPLLEYRRQGIPNESWRITKINERYELCDTYPALLVVPANIPDEELK 256

Query: 250 QASSFRARYRLPVISWCHSGTGAVLARSSQPLVGLMMNMRSNADEKLVASLCTQLAGGKM 309
           + +SFR+R R+PV+SW H  + A + R SQP+VG+    RS  DEK + ++    A    
Sbjct: 257 RVASFRSRGRIPVLSWIHPESQATITRCSQPMVGV-SGKRSKEDEKYLQAIMDSNAQS-- 313

Query: 310 SRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESFARLRD 366
              K++I DARP  NA+AN A GGG ES   Y  +E+VF  I NIH MRES  +L++
Sbjct: 314 --HKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMRESLRKLKE 368
Phosphatase that acts on lipids with a phosphoinositol headgroup. Has phosphatase activity towards phosphatidylinositol 3-phosphate and phosphatidylinositol 3,5-bisphosphate.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: -
>sp|Q5REB9|MTMR2_PONAB Myotubularin-related protein 2 OS=Pongo abelii GN=MTMR2 PE=2 SV=1 Back     alignment and function description
>sp|A6QLT2|MTMR2_BOVIN Myotubularin-related protein 2 OS=Bos taurus GN=MTMR2 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZIV1|MTMR2_CHICK Myotubularin-related protein 2 OS=Gallus gallus GN=MTMR2 PE=2 SV=1 Back     alignment and function description
>sp|Q9Z2D1|MTMR2_MOUSE Myotubularin-related protein 2 OS=Mus musculus GN=Mtmr2 PE=1 SV=3 Back     alignment and function description
>sp|A0JMK5|MTMR2_DANRE Myotubularin-related protein 2 OS=Danio rerio GN=mtmr2 PE=2 SV=2 Back     alignment and function description
>sp|Q9Z2C5|MTM1_MOUSE Myotubularin OS=Mus musculus GN=Mtm1 PE=1 SV=2 Back     alignment and function description
>sp|Q5R9S3|MTM1_PONAB Myotubularin OS=Pongo abelii GN=MTM1 PE=2 SV=1 Back     alignment and function description
>sp|Q5EB32|MTM1_XENTR Myotubularin OS=Xenopus tropicalis GN=mtm1 PE=2 SV=1 Back     alignment and function description
>sp|Q52KU6|MTM1_XENLA Myotubularin OS=Xenopus laevis GN=mtm1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query374
296090386 794 unnamed protein product [Vitis vinifera] 0.994 0.468 0.764 1e-168
359486926 845 PREDICTED: myotubularin-related protein 0.994 0.440 0.764 1e-168
240255320 840 Myotubularin-like phosphatases II-like p 1.0 0.445 0.738 1e-167
8567785 840 myotubularin related protein, putative [ 1.0 0.445 0.738 1e-167
28393472 503 putative myotubularin [Arabidopsis thali 1.0 0.743 0.735 1e-167
255586601 854 phosphoprotein phosphatase, putative [Ri 0.989 0.433 0.731 1e-162
449441816 857 PREDICTED: LOW QUALITY PROTEIN: myotubul 0.994 0.434 0.737 1e-162
297833832 828 hypothetical protein ARALYDRAFT_317855 [ 0.957 0.432 0.745 1e-161
356533895 850 PREDICTED: myotubularin-related protein 0.994 0.437 0.724 1e-161
42567644 833 Myotubularin-like phosphatases II-like p 1.0 0.448 0.714 1e-158
>gi|296090386|emb|CBI40205.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 286/374 (76%), Positives = 326/374 (87%), Gaps = 2/374 (0%)

Query: 1   MAAPRPRSTRSTSLRDSDK-LEGTACWDALEWTKIEPVTSSVSHANLDLLLDAERIVVEG 59
           MA+ RPR+ RSTSLRDSD  +EG + WDA+EWTKIEP + SVS  NL+ LL+AE+IV EG
Sbjct: 1   MASSRPRA-RSTSLRDSDAPMEGASGWDAIEWTKIEPFSRSVSLGNLECLLEAEQIVAEG 59

Query: 60  YGVVLVNTDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTD 119
            GVVLVNTDEAGTL+VTNFR+ FL EGTR+II LGTIPLA IEK +K+ VK  S PRQ D
Sbjct: 60  QGVVLVNTDEAGTLLVTNFRLFFLREGTRDIIPLGTIPLATIEKFSKIVVKPPSAPRQFD 119

Query: 120 KNPSRRLLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKCATPARIWDIYAFSSGPSKCVN 179
           K PS+RLLQVIGKDMRI+VFGFRP+TKQRR ++DAL++C  P R+WD+YAF+SGP K  N
Sbjct: 120 KAPSQRLLQVIGKDMRIIVFGFRPRTKQRRTIFDALLRCTRPTRLWDLYAFASGPFKFTN 179

Query: 180 TNPKVRLLNEYFRLLGKSSSSATMDMIEEGSFTLSNELWRISDINSTYTMCQSYPFALIV 239
           TNP VRLL+EYFRLLGK S  A+MD IE+GSFTLSN+LWRIS INS YT+C +YPFALIV
Sbjct: 180 TNPMVRLLDEYFRLLGKGSCHASMDTIEDGSFTLSNDLWRISGINSNYTLCPTYPFALIV 239

Query: 240 PECIIDQELLQASSFRARYRLPVISWCHSGTGAVLARSSQPLVGLMMNMRSNADEKLVAS 299
           P  I D+E+LQASSFRA+ RLPV+SWCH  TGAVLARSSQPLVGLMMNMRSN DEK+VA+
Sbjct: 240 PRSIGDEEILQASSFRAKCRLPVVSWCHPVTGAVLARSSQPLVGLMMNMRSNTDEKIVAA 299

Query: 300 LCTQLAGGKMSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRE 359
           LCTQLAG + +RRKLYIADARPRKNALANGAMGGGSESSS+YFQSEIVFFGIDNIHAMRE
Sbjct: 300 LCTQLAGARETRRKLYIADARPRKNALANGAMGGGSESSSHYFQSEIVFFGIDNIHAMRE 359

Query: 360 SFARLRDYLDTHGT 373
           SFARLRDYLDT+GT
Sbjct: 360 SFARLRDYLDTYGT 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359486926|ref|XP_002271349.2| PREDICTED: myotubularin-related protein 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|240255320|ref|NP_187666.5| Myotubularin-like phosphatases II-like protein [Arabidopsis thaliana] gi|332641403|gb|AEE74924.1| Myotubularin-like phosphatases II-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|8567785|gb|AAF76357.1| myotubularin related protein, putative [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|28393472|gb|AAO42157.1| putative myotubularin [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255586601|ref|XP_002533934.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223526103|gb|EEF28453.1| phosphoprotein phosphatase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449441816|ref|XP_004138678.1| PREDICTED: LOW QUALITY PROTEIN: myotubularin-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297833832|ref|XP_002884798.1| hypothetical protein ARALYDRAFT_317855 [Arabidopsis lyrata subsp. lyrata] gi|297330638|gb|EFH61057.1| hypothetical protein ARALYDRAFT_317855 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356533895|ref|XP_003535493.1| PREDICTED: myotubularin-related protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|42567644|ref|NP_196074.2| Myotubularin-like phosphatases II-like protein [Arabidopsis thaliana] gi|332003375|gb|AED90758.1| Myotubularin-like phosphatases II-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query374
TAIR|locus:2075850 840 MTM1 "myotubularin 1" [Arabido 0.951 0.423 0.752 6.4e-147
TAIR|locus:2184402 833 MTM2 "myotubularin 2" [Arabido 0.951 0.427 0.721 4.4e-139
UNIPROTKB|C9JEX3 557 MTMR2 "Myotubularin-related pr 0.398 0.267 0.454 4.8e-37
UNIPROTKB|J9P0D0 571 MTMR2 "Uncharacterized protein 0.462 0.302 0.410 6.1e-37
UNIPROTKB|Q5ZIV1 571 MTMR2 "Myotubularin-related pr 0.398 0.260 0.454 1.1e-36
UNIPROTKB|F1MMI7 617 MTMR2 "Myotubularin-related pr 0.398 0.241 0.448 1.6e-36
UNIPROTKB|F6V8T7 643 MTMR2 "Uncharacterized protein 0.462 0.269 0.410 1.7e-36
UNIPROTKB|Q13614 643 MTMR2 "Myotubularin-related pr 0.398 0.231 0.454 1.7e-36
UNIPROTKB|E2QTM9 645 MTMR2 "Uncharacterized protein 0.462 0.268 0.410 1.7e-36
UNIPROTKB|F1STI4 617 MTMR2 "Uncharacterized protein 0.398 0.241 0.448 2e-36
TAIR|locus:2075850 MTM1 "myotubularin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1435 (510.2 bits), Expect = 6.4e-147, P = 6.4e-147
 Identities = 268/356 (75%), Positives = 309/356 (86%)

Query:    19 KLEGTACWDALEWTKIEPVTSSVSHANLDLLLDAERIVVEGYGVVLVNTDEAGTLIVTNF 78
             K++GT  WD LEWTK++  + S S +NL  LL++ER++VEGYGVVL+NTDEAGTL+VTNF
Sbjct:    23 KMDGTGSWDTLEWTKLDSTSGSGSFSNLSCLLESERVIVEGYGVVLINTDEAGTLLVTNF 82

Query:    79 RILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVV 138
             RILFLSEGTR +I LGTIPLA IEK NKM +K+QS+PRQ+DK P RRLLQV GKDMRI+V
Sbjct:    83 RILFLSEGTRKVIPLGTIPLATIEKFNKMVLKVQSSPRQSDKIPPRRLLQVTGKDMRIIV 142

Query:   139 FGFRPKTKQRRAVYDALVKCATPARIWDIYAFSSGPSKCVNTNPKVRLLNEYFRLLGKSS 198
             +GFRP+TKQRR V+DAL+KC  P R+WD+Y F+ GPSK  N NPK RLLNEYFRLLGKSS
Sbjct:   143 YGFRPRTKQRRNVFDALLKCTKPERVWDLYTFACGPSKFGNANPKERLLNEYFRLLGKSS 202

Query:   199 SSATMDMIEEGSFTLSNELWRISDINSTYTMCQSYPFALIVPECIIDQELLQASSFRARY 258
               A+MDMIE+G+FTLSNELWRISD+NS Y +CQ+YPFA ++P+ I D ELLQA SFRAR 
Sbjct:   203 IRASMDMIEDGAFTLSNELWRISDLNSNYNLCQTYPFAFMIPKSISDAELLQACSFRARC 262

Query:   259 RLPVISWCHSGTGAVLARSSQPLVGLMMNMRSNADEKLVASLCTQLAGGKMSRRKLYIAD 318
             RLPVI+WC  G+GAV+ARSSQPLVGLMMNMRSN DEKLVA+ C+QL G K  RRKLYIAD
Sbjct:   263 RLPVITWCQPGSGAVIARSSQPLVGLMMNMRSNLDEKLVAAFCSQLPGAKGERRKLYIAD 322

Query:   319 ARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESFARLRDYLDTHGTT 374
             ARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESF+R+RDYLD HGTT
Sbjct:   323 ARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESFSRVRDYLDMHGTT 378
GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0016311 "dephosphorylation" evidence=IEA
GO:0016791 "phosphatase activity" evidence=IEA
GO:0004438 "phosphatidylinositol-3-phosphatase activity" evidence=IDA
GO:0052629 "phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity" evidence=IDA
GO:0007243 "intracellular protein kinase cascade" evidence=RCA
GO:0043407 "negative regulation of MAP kinase activity" evidence=RCA
TAIR|locus:2184402 MTM2 "myotubularin 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|C9JEX3 MTMR2 "Myotubularin-related protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9P0D0 MTMR2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIV1 MTMR2 "Myotubularin-related protein 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MMI7 MTMR2 "Myotubularin-related protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F6V8T7 MTMR2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q13614 MTMR2 "Myotubularin-related protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QTM9 MTMR2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1STI4 MTMR2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
pfam06602118 pfam06602, Myotub-related, Myotubularin-related 4e-48
cd1322394 cd13223, PH-GRAM_MTM-like, Myotubularian 1 and rel 7e-09
cd1057094 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran 1e-08
smart0056860 smart00568, GRAM, domain in glucosyltransferases, 3e-06
cd13356144 cd13356, PH-GRAM_MTMR2_mammal-like, Myotubularian 4e-06
cd13358153 cd13358, PH-GRAM_MTMR1, Myotubularian related 1 pr 1e-04
cd13355152 cd13355, PH-GRAM_MTM1, Myotubularian 1 protein (MT 0.001
cd13212110 cd13212, PH-GRAM_MTMR10-like, Pleckstrin Homology- 0.003
cd13357148 cd13357, PH-GRAM_MTMR2_insect-like, Myotubularian 0.004
>gnl|CDD|219103 pfam06602, Myotub-related, Myotubularin-related Back     alignment and domain information 
 Score =  158 bits (402), Expect = 4e-48
 Identities = 62/123 (50%), Positives = 77/123 (62%), Gaps = 5/123 (4%)

Query: 227 YTMCQSYPFALIVPECIIDQELLQASSFRARYRLPVISWCHSGTGAVLARSSQPLVGLMM 286
           Y +C +YP  L+VP+ I D EL + + FR+R RLPV+SW H   GAV+ R SQPLVG   
Sbjct: 1   YELCPTYPAKLVVPKSISDDELKKVAKFRSRGRLPVLSWRHPENGAVIVRCSQPLVG-FS 59

Query: 287 NMRSNADEKLVASLCTQLAGGKMSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEI 346
             R   DEKL+ ++    A      RKLYI DARPR NALAN A GGG E+  NY  +E+
Sbjct: 60  GKRCKEDEKLLQAIRKANAQ----SRKLYIVDARPRVNALANRAKGGGYENEENYPNAEL 115

Query: 347 VFF 349
           VF 
Sbjct: 116 VFL 118

This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with pfam02893. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate. Mutations in gene encoding myotubularin-related proteins have been associated with disease. Length = 118
>gnl|CDD|241377 cd13223, PH-GRAM_MTM-like, Myotubularian 1 and related proteins Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase Back     alignment and domain information
>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain Back     alignment and domain information
>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins Back     alignment and domain information
>gnl|CDD|241510 cd13356, PH-GRAM_MTMR2_mammal-like, Myotubularian related 2 protein (MTMR2) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain Back     alignment and domain information
>gnl|CDD|241512 cd13358, PH-GRAM_MTMR1, Myotubularian related 1 protein (MTMR1) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain Back     alignment and domain information
>gnl|CDD|241509 cd13355, PH-GRAM_MTM1, Myotubularian 1 protein (MTM1) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain Back     alignment and domain information
>gnl|CDD|241366 cd13212, PH-GRAM_MTMR10-like, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain Back     alignment and domain information
>gnl|CDD|241511 cd13357, PH-GRAM_MTMR2_insect-like, Myotubularian related 2 protein (MTMR2) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 374
KOG4471 717 consensus Phosphatidylinositol 3-phosphate 3-phosp 100.0
KOG1089 573 consensus Myotubularin-related phosphatidylinosito 100.0
PF06602 353 Myotub-related: Myotubularin-like phosphatase doma 100.0
KOG1090 1732 consensus Predicted dual-specificity phosphatase [ 99.96
PF1160589 Vps36_ESCRT-II: Vacuolar protein sorting protein 3 97.92
smart0056861 GRAM domain in glucosyltransferases, myotubularins 97.69
PF0289369 GRAM: GRAM domain; InterPro: IPR004182 The GRAM do 97.5
KOG3294261 consensus WW domain binding protein WBP-2, contain 97.04
PF1447096 bPH_3: Bacterial PH domain 96.58
PF08000124 bPH_1: Bacterial PH domain; InterPro: IPR012544 Th 96.45
PF07289339 DUF1448: Protein of unknown function (DUF1448); In 95.8
smart0068355 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, 95.59
PF07289339 DUF1448: Protein of unknown function (DUF1448); In 94.61
PF14844106 PH_BEACH: PH domain associated with Beige/BEACH; P 93.99
cd01201108 Neurobeachin Neurobeachin Pleckstrin homology-like 92.41
cd0124498 PH_RasGAP_CG9209 RAS_GTPase activating protein (GA 81.89
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-79  Score=617.46  Aligned_cols=320  Identities=39%  Similarity=0.568  Sum_probs=273.9

Q ss_pred             ccccceeecCCCCCCcccCCcCcccCCceEEEEeccEEEeCCCcceEEEEeCCeEEEEeCCCCCceeeceeeccceeeee
Q 047971           26 WDALEWTKIEPVTSSVSHANLDLLLDAERIVVEGYGVVLVNTDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLN  105 (374)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~LLpGE~vv~~~~~V~l~~~~~~GtL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~  105 (374)
                      ||.+.|++++..++.  .....++||||.++.+...|.+++ +..|+|.||||||+|+..++++.+. .+|||+.|++|+
T Consensus        15 ~~s~~~t~~~~~~~~--~~~~~~~L~GE~i~~~~y~c~f~G-~~~g~l~lsNyRl~fks~~t~~~~~-~~VPLg~Ie~ve   90 (717)
T KOG4471|consen   15 NDSFPRTSLDKEDEN--LQVPFPLLPGESIIDEKYICPFLG-AVDGTLALSNYRLYFKSKETDPPFV-LDVPLGVIERVE   90 (717)
T ss_pred             hhccCchhccccccc--ccCcccccCCcccccceecccccc-cccceEEeeeeEEEEEeccCCCcee-Eeechhhhhhhh
Confidence            999999999988665  577789999999999998888887 8999999999999999998877544 489999999999


Q ss_pred             cccccccCCCCCCCCCCCcccEEEEecCceEEEEeecCCchhHHHHHHHHHhhcCCC-chhcccccccCCCCCCCCCccc
Q 047971          106 KMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKCATPA-RIWDIYAFSSGPSKCVNTNPKV  184 (374)
Q Consensus       106 k~~~k~~s~~~~~~~~~~~~~L~I~CKDfR~l~f~F~~~~~~~~~v~~~L~~~~~P~-~~~~lFAF~~~p~~~~~~~p~~  184 (374)
                      +++++.+        +.+..+|+|.|||+|+++|+|.+.+...+++|+.|+++++|. ....||||.|......+.....
T Consensus        91 k~~~~~~--------g~ns~~L~i~CKDmr~lR~~fk~~~q~r~~~~e~L~~~~~p~~~~~~LFaF~~~~~~~~ng~e~~  162 (717)
T KOG4471|consen   91 KRGGATS--------GENSFGLEITCKDMRNLRCAFKQEEQCRRDWFERLNRAAFPPAKSEDLFAFAYHAWFPVNGSENG  162 (717)
T ss_pred             hcCcccc--------CCcceeEEEEeccccceeeecCcccccHHHHHHHHHHhcCCcccchhhhhcccHhhcCCCCcccc
Confidence            9864321        112578999999999999999876666669999999999985 5689999999766533211000


Q ss_pred             chhhHHHHHhcCCCCCcchhhhhhccCCCCCCCeEEEeccCCCcccccCCCccccccccchHHHHHhhhcccCCCcceEE
Q 047971          185 RLLNEYFRLLGKSSSSATMDMIEEGSFTLSNELWRISDINSTYTMCQSYPFALIVPECIIDQELLQASSFRARYRLPVIS  264 (374)
Q Consensus       185 ~~~~E~~R~~~~~~~~~~~e~~~~g~~~~~~~~WRis~~N~~y~~c~tYP~~lvVP~~i~d~~l~~~a~fRs~~R~Pv~s  264 (374)
                          .+.++     . ..+.+.|.++++++++.||||.+|++|++|+|||..++||++|+|++|..+|.||+++|+||++
T Consensus       163 ----~~~~l-----~-~P~~~~E~~r~g~~n~~WRIs~iNs~Y~LC~SYP~~l~VP~~isD~eL~~VasFRsr~RlPvls  232 (717)
T KOG4471|consen  163 ----QHWKL-----Y-DPMFKNEYRRQGLPNESWRISKINSNYKLCDSYPAKLVVPKSISDEELLRVASFRSRCRLPVLS  232 (717)
T ss_pred             ----ccccc-----c-ChhhHhHHHhcCCChhheeeecccccccccccCccceEeccccCHHHHHHHhhhhhcCccceEE
Confidence                00111     1 1123445555688999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCceEEeccCcccccccCCCChHHHHHHHHHHHhccCCCCCCCcEEEEcCCcchhHHhhccCCCCCcCCCCCCCc
Q 047971          265 WCHSGTGAVLARSSQPLVGLMMNMRSNADEKLVASLCTQLAGGKMSRRKLYIADARPRKNALANGAMGGGSESSSNYFQS  344 (374)
Q Consensus       265 w~h~~~~a~L~RssqP~~G~~~~~r~~~De~ll~~i~~~~~~~~~~~~~l~I~D~R~~~nA~an~a~G~G~E~~~~Y~~~  344 (374)
                      |+||++||+|.|||||++|+. ++|+++||+||++|+.+++.. +..+||+|+||||+.||+||+|||||||++++||||
T Consensus       233 w~Hp~sgAvIaRcSQPlVG~~-g~Rn~~DEkll~~i~~a~A~~-~e~~KL~I~DARp~~nAvANkAkGGG~Es~~~Y~na  310 (717)
T KOG4471|consen  233 WRHPESGAVIARCSQPLVGWS-GKRNKDDEKLLQAIADANAQD-GERRKLLIVDARPYTNAVANKAKGGGYESEEAYPNA  310 (717)
T ss_pred             EEcCCCCceEEecCCcccchh-cccccchHHHHHHHHHhcccc-cccceEEEEecccchhhhhccccCCCccChhccccc
Confidence            999999999999999999997 699999999999999877542 236799999999999999999999999999999999


Q ss_pred             eEEEcCCCChHHHHHHHHHHHHHHh
Q 047971          345 EIVFFGIDNIHAMRESFARLRDYLD  369 (374)
Q Consensus       345 ~~~f~~I~NIH~mr~S~~kl~~~~~  369 (374)
                      +++||||+|||+||+||+||+++|.
T Consensus       311 Ei~Fl~i~NIH~mR~s~~~~k~~~~  335 (717)
T KOG4471|consen  311 EIVFLGIHNIHVMRESLRKLKEICY  335 (717)
T ss_pred             eEEEeecchhHHHHHHHHhHHHhhc
Confidence            9999999999999999999999984

>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only] Back     alignment and domain information
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO Back     alignment and domain information
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only] Back     alignment and domain information
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes Back     alignment and domain information
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins Back     alignment and domain information
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins Back     alignment and domain information
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms] Back     alignment and domain information
>PF14470 bPH_3: Bacterial PH domain Back     alignment and domain information
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins Back     alignment and domain information
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5) Back     alignment and domain information
>smart00683 DM16 Repeats in sea squirt COS41 Back     alignment and domain information
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5) Back     alignment and domain information
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C Back     alignment and domain information
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain Back     alignment and domain information
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
1lw3_A 657 Crystal Structure Of Myotubularin-Related Protein 2 4e-40
1zsq_A 528 Crystal Structure Of Mtmr2 In Complex With Phosphat 9e-40
2yf0_A 512 Human Myotubularin Related Protein 6 (Mtmr6) Length 9e-31
>pdb|1LW3|A Chain A, Crystal Structure Of Myotubularin-Related Protein 2 Complexed With Phosphate Length = 657 Back     alignment and structure 
Iteration: 1

 Score =  161 bits (408), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 156/297 (52%), Gaps = 32/297 (10%)
Query: 71  GTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVI 130
           GTL VTN+R+ F S   R+   +    L  I ++ K+          + +  +   L+ +
Sbjct: 106 GTLTVTNYRLYFKS-MERDPPFVLDASLGVINRVEKIG-------GASSRGENSYGLETV 157
Query: 131 GKDMRIVVFGFRPKTKQRRAVYDALVKCATP-ARIWDIYAFSSGPSKCVNTNPKVRLLNE 189
            KD+R + F  +P+ + RR++++ L+K A P +    ++AF                  E
Sbjct: 158 CKDIRNLRFAHKPEGRTRRSIFENLMKYAFPVSNNLPLFAF------------------E 199
Query: 190 YFRLLGKSSSSATMDMIEEGSFTLSNELWRISDINSTYTMCQSYPFALIVPECIIDQELL 249
           Y  +  ++       ++E     + NE WRI+ IN  Y +C +YP  L+VP  I D+EL 
Sbjct: 200 YKEVFPENGWKLYDPLLEYRRQGIPNESWRITKINERYELCDTYPALLVVPANIPDEELK 259
Query: 250 QASSFRARYRLPVISWCHSGTGAVLARSSQPLVGLMMNMRSNADEKLVASLCTQLAGGKM 309
           + +SFR+R R+PV+SW H  + A + R SQP+VG+    RS  DEK + ++    A    
Sbjct: 260 RVASFRSRGRIPVLSWIHPESQATITRCSQPMVGV-SGKRSKEDEKYLQAIMDSNAQS-- 316
Query: 310 SRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESFARLRD 366
              K++I DARP  NA+AN A GGG ES   Y  +E+VF  I NIH MRES  +L++
Sbjct: 317 --HKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMRESLRKLKE 371
>pdb|1ZSQ|A Chain A, Crystal Structure Of Mtmr2 In Complex With Phosphatidylinositol 3-Phosphate Length = 528 Back     alignment and structure
>pdb|2YF0|A Chain A, Human Myotubularin Related Protein 6 (Mtmr6) Length = 512 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
1zsq_A 528 Myotubularin-related protein 2; protein-phospholip 4e-64
1lw3_A 657 Myotubularin-related protein 2; protein-phosphate 1e-63
2yf0_A 512 Myotubularin-related protein 6; hydrolase; 2.65A { 4e-59
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A* Length = 528 Back     alignment and structure
 Score =  212 bits (539), Expect = 4e-64
 Identities = 103/326 (31%), Positives = 158/326 (48%), Gaps = 33/326 (10%)

Query: 49  LLDAERIVVEGYGVVLV---NTDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLN 105
           LL  E I      V  +        GTL VTN+R+ F S        L    L  I ++ 
Sbjct: 9   LLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVL-DASLGVINRVE 67

Query: 106 KMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKCATPARIW 165
           K+          + +  +   L+ + KD+R + F  +P+ + RR++++ L+K A P    
Sbjct: 68  KI-------GGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFPV--- 117

Query: 166 DIYAFSSGPSKCVNTNPKVRLLNEYFRLLGKSSSSATMDMIEEGSFTLSNELWRISDINS 225
                         +N       EY  +  ++       ++E     + NE WRI+ IN 
Sbjct: 118 --------------SNNLPLFAFEYKEVFPENGWKLYDPLLEYRRQGIPNESWRITKINE 163

Query: 226 TYTMCQSYPFALIVPECIIDQELLQASSFRARYRLPVISWCHSGTGAVLARSSQPLVGLM 285
            Y +C +YP  L+VP  I D+EL + +SFR+R R+PV+SW H  + A + R SQP+VG+ 
Sbjct: 164 RYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQATITRCSQPMVGVS 223

Query: 286 MNMRSNADEKLVASLCTQLAGGKMSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSE 345
              RS  DEK + ++            K++I DARP  NA+AN A GGG ES   Y  +E
Sbjct: 224 GK-RSKEDEKYLQAIMDS----NAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAE 278

Query: 346 IVFFGIDNIHAMRESFARLRDYLDTH 371
           +VF  I NIH MRES  +L++ +  +
Sbjct: 279 LVFLDIHNIHVMRESLRKLKEIVYPN 304
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A Length = 657 Back     alignment and structure
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens} Length = 512 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query374
1zsq_A 528 Myotubularin-related protein 2; protein-phospholip 100.0
1lw3_A 657 Myotubularin-related protein 2; protein-phosphate 100.0
2yf0_A 512 Myotubularin-related protein 6; hydrolase; 2.65A { 100.0
2cay_A145 VPS36 PH domain, vacuolar protein sorting protein 97.98
2hth_B140 Vacuolar protein sorting protein 36; GLUE domain, 97.93
3hsa_A126 Pleckstrin homology domain; YP_926556.1, structura 96.69
1w7p_D 566 VPS36P, YLR417W; ESCRT-II complex, endosomal prote 96.33
3b77_A193 Uncharacterized protein; pleckstrin-homology domai 92.96
1pfj_A108 TFIIH basal transcription factor complex P62 subun 91.08
1zyi_A171 Methylosome subunit picln; PH domain, cell volume 85.86
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A* Back     alignment and structure
Probab=100.00  E-value=1.5e-75  Score=601.90  Aligned_cols=295  Identities=37%  Similarity=0.571  Sum_probs=261.1

Q ss_pred             CCcCcccCCceEEEEeccEEEeC---CCcceEEEEeCCeEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCC
Q 047971           44 ANLDLLLDAERIVVEGYGVVLVN---TDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDK  120 (374)
Q Consensus        44 ~~~~~LLpGE~vv~~~~~V~l~~---~~~~GtL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~  120 (374)
                      ...+.|||||.|+.++.+|.++.   +.+.|+|+||||||+|++.+.+....+ +|||++|++|+++.+.  + ..+   
T Consensus         4 ~~~~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~~~~~~~-~iPL~~I~~vek~~~~--s-~~~---   76 (528)
T 1zsq_A            4 MEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVL-DASLGVINRVEKIGGA--S-SRG---   76 (528)
T ss_dssp             CCCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEE-EEEGGGEEEEEEECCT--T-CCS---
T ss_pred             CCCCccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCCCccEEE-EeeccceEEEEEcCCC--C-cCC---
Confidence            45678999999999999999873   468999999999999999765544333 8999999999986421  1 111   


Q ss_pred             CCCcccEEEEecCceEEEEeecCCchhHHHHHHHHHhhcCCCchh-cccccccCCCCCCCCCcccchhhHHHHHhcCCCC
Q 047971          121 NPSRRLLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKCATPARIW-DIYAFSSGPSKCVNTNPKVRLLNEYFRLLGKSSS  199 (374)
Q Consensus       121 ~~~~~~L~I~CKDfR~l~f~F~~~~~~~~~v~~~L~~~~~P~~~~-~lFAF~~~p~~~~~~~p~~~~~~E~~R~~~~~~~  199 (374)
                       ...+.|+|+|||||+++|.|.+++.+++++|++|.++++|.+.. .||||.|+|....+.|..++...||+|+      
T Consensus        77 -~~~~~l~I~CKDfr~~~f~f~~~~~~~~~v~~~L~~~~~p~~~~~~lfaF~y~~~~~~~gw~~y~~~~E~~R~------  149 (528)
T 1zsq_A           77 -ENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFPVSNNLPLFAFEYKEVFPENGWKLYDPLLEYRRQ------  149 (528)
T ss_dssp             -TTCSEEEEEETTTEEEEEECCGGGCCHHHHHHHHHHHSCTTTTTCCCGGGTCCCCCSSCGGGSCCHHHHHHHT------
T ss_pred             -CCCceEEEEccCCeEEEEEecCchHHHHHHHHHHHHHhcCCccccceeeeeccccccCCCceecCHHHHHHHc------
Confidence             11467999999999999999765567999999999999998776 4999999998766667778888899986      


Q ss_pred             CcchhhhhhccCCCCCCCeEEEeccCCCcccccCCCccccccccchHHHHHhhhcccCCCcceEEeeecCCCceEEeccC
Q 047971          200 SATMDMIEEGSFTLSNELWRISDINSTYTMCQSYPFALIVPECIIDQELLQASSFRARYRLPVISWCHSGTGAVLARSSQ  279 (374)
Q Consensus       200 ~~~~e~~~~g~~~~~~~~WRis~~N~~y~~c~tYP~~lvVP~~i~d~~l~~~a~fRs~~R~Pv~sw~h~~~~a~L~Rssq  279 (374)
                                  ++++..||||.+|++|++|+|||..+|||++++|++|.++|+||+++|||||||+|+.|||+|+||||
T Consensus       150 ------------g~~~~~WRis~vN~~y~~c~tYP~~lvVP~~i~D~~l~~~a~frs~~R~Pvl~w~h~~~~a~l~Rssq  217 (528)
T 1zsq_A          150 ------------GIPNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQATITRCSQ  217 (528)
T ss_dssp             ------------TCSCSSEEEECTTTTSSSCTTSCSSEEEETTCCHHHHHHHHHHBGGGCCCEEEEECTTTCCEEEEECC
T ss_pred             ------------CCCcccEEEEEecCCCCccCCCCCeEEEeCcCCHHHHHHHHHHhhcCCceEEEEEcCCCCcEEEEcCC
Confidence                        35667899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCChHHHHHHHHHHHhccCCCCCCCcEEEEcCCcchhHHhhccCCCCCcCCCCCCCceEEEcCCCChHHHHH
Q 047971          280 PLVGLMMNMRSNADEKLVASLCTQLAGGKMSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRE  359 (374)
Q Consensus       280 P~~G~~~~~r~~~De~ll~~i~~~~~~~~~~~~~l~I~D~R~~~nA~an~a~G~G~E~~~~Y~~~~~~f~~I~NIH~mr~  359 (374)
                      |++|+. ++||.+||+||++|+.+++    ..++++|+||||+.||+||+|+|||||++++|+||+++|+||+|||+||+
T Consensus       218 P~~g~~-~~r~~~DE~~l~~i~~~~~----~~~~~~i~D~rp~~~A~an~a~G~G~E~~~~Y~~~~~~f~~i~nIh~~r~  292 (528)
T 1zsq_A          218 PMVGVS-GKRSKEDEKYLQAIMDSNA----QSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMRE  292 (528)
T ss_dssp             BCCTTT-TCCCHHHHHHHHHHHHHSS----SCSSEEEEECSCHHHHHHHHHHTCCCCCTTTCTTEEEEECCCCCHHHHHH
T ss_pred             cCcccc-cCCCHHHHHHHHHHHHhCc----ccCccEEEccCchhhHHHhhhcCCcccCcccccCceEEEcCCccHHHHHH
Confidence            999986 6899999999999987552    36789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 047971          360 SFARLRDYLD  369 (374)
Q Consensus       360 S~~kl~~~~~  369 (374)
                      ||.||+++|.
T Consensus       293 S~~kL~~~~~  302 (528)
T 1zsq_A          293 SLRKLKEIVY  302 (528)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHhC
Confidence            9999999995
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A Back     alignment and structure
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens} Back     alignment and structure
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12 Back     alignment and structure
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A Back     alignment and structure
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A* Back     alignment and structure
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Back     alignment and structure
>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13 Back     alignment and structure
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B Back     alignment and structure
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 374
d1zsqa2 387 c.45.1.3 (A:199-585) Myotubularin-related protein 1e-50
d1zsqa1125 b.55.1.8 (A:74-198) Myotubularin-related protein 2 9e-22
>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Myotubularin-like phosphatases
domain: Myotubularin-related protein 2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  172 bits (436), Expect = 1e-50
 Identities = 70/160 (43%), Positives = 98/160 (61%), Gaps = 5/160 (3%)

Query: 213 LSNELWRISDINSTYTMCQSYPFALIVPECIIDQELLQASSFRARYRLPVISWCHSGTGA 272
           + NE WRI+ IN  Y +C +YP  L+VP  I D+EL + +SFR+R R+PV+SW H  + A
Sbjct: 22  IPNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQA 81

Query: 273 VLARSSQPLVGLMMNMRSNADEKLVASLCTQLAGGKMSRRKLYIADARPRKNALANGAMG 332
            + R SQP+VG +   RS  DEK + ++    A       K++I DARP  NA+AN A G
Sbjct: 82  TITRCSQPMVG-VSGKRSKEDEKYLQAIMDSNA----QSHKIFIFDARPSVNAVANKAKG 136

Query: 333 GGSESSSNYFQSEIVFFGIDNIHAMRESFARLRDYLDTHG 372
           GG ES   Y  +E+VF  I NIH MRES  +L++ +  + 
Sbjct: 137 GGYESEDAYQNAELVFLDIHNIHVMRESLRKLKEIVYPNI 176
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 125 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query374
d1zsqa2 387 Myotubularin-related protein 2, C-terminal domain 100.0
d1zsqa1125 Myotubularin-related protein 2, N-terminal domain 99.95
d2caya1130 Vacuolar protein sorting protein 36, VPS36 {Baker' 98.14
d2hthb1129 Vacuolar protein sorting protein 36, VPS36 {Human 97.74
d2rnrb1108 TFIIH basal transcription factor complex p62 subun 95.95
d3dcxa1116 Uncharacterized protein Shew0819 {Shewanella loihi 95.28
d1t77a2110 Lipopolysaccharide-responsive and beige-like ancho 94.71
>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Myotubularin-like phosphatases
domain: Myotubularin-related protein 2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-49  Score=387.71  Aligned_cols=168  Identities=44%  Similarity=0.729  Sum_probs=156.1

Q ss_pred             CCCcccchhhHHHHHhcCCCCCcchhhhhhccCCCCCCCeEEEeccCCCcccccCCCccccccccchHHHHHhhhcccCC
Q 047971          179 NTNPKVRLLNEYFRLLGKSSSSATMDMIEEGSFTLSNELWRISDINSTYTMCQSYPFALIVPECIIDQELLQASSFRARY  258 (374)
Q Consensus       179 ~~~p~~~~~~E~~R~~~~~~~~~~~e~~~~g~~~~~~~~WRis~~N~~y~~c~tYP~~lvVP~~i~d~~l~~~a~fRs~~  258 (374)
                      ++|..++..+||.|+                  +++++.||||.+|++|++|+|||..+|||++++|++|.++|+||+++
T Consensus         6 dGW~~yd~~~E~~Rl------------------Gl~~~~WRiS~iN~~Y~lC~SYP~~lVVP~~isD~~l~~~a~fr~~~   67 (387)
T d1zsqa2           6 NGWKLYDPLLEYRRQ------------------GIPNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRG   67 (387)
T ss_dssp             CGGGSCCHHHHHHHT------------------TCSCSSEEEECTTTTSSSCTTSCSSEEEETTCCHHHHHHHHHHBGGG
T ss_pred             CchhhcCHHHHHHhc------------------CCCCCCEEEeeecCCCeecCCCCCceEEcCcCCHHHHHHHHHhhcCC
Confidence            345667778899886                  45567899999999999999999999999999999999999999999


Q ss_pred             CcceEEeeecCCCceEEeccCcccccccCCCChHHHHHHHHHHHhccCCCCCCCcEEEEcCCcchhHHhhccCCCCCcCC
Q 047971          259 RLPVISWCHSGTGAVLARSSQPLVGLMMNMRSNADEKLVASLCTQLAGGKMSRRKLYIADARPRKNALANGAMGGGSESS  338 (374)
Q Consensus       259 R~Pv~sw~h~~~~a~L~RssqP~~G~~~~~r~~~De~ll~~i~~~~~~~~~~~~~l~I~D~R~~~nA~an~a~G~G~E~~  338 (374)
                      |||||||.|+.|||+|+|||||++|+. +.||.+||++|++|+...    +..++++|+||||++||+||+++|||+|++
T Consensus        68 R~Pvl~w~~~~~~a~L~RssqP~~g~~-~~r~~ede~~l~~i~~~~----~~~~~~~I~D~Rp~~na~an~~~ggG~E~~  142 (387)
T d1zsqa2          68 RIPVLSWIHPESQATITRCSQPMVGVS-GKRSKEDEKYLQAIMDSN----AQSHKIFIFDARPSVNAVANKAKGGGYESE  142 (387)
T ss_dssp             CCCEEEEECTTTCCEEEEECCBCCTTT-TCCCHHHHHHHHHHHHHS----SSCSSEEEEECSCHHHHHHHHHHTCCCCCT
T ss_pred             CceEEEEEcCCCCceEEeeCCcCCCcc-CCCcHHHHHHHHHHHHhC----CCcCcceeecCCcchhHHHhhhcCCCccch
Confidence            999999999999999999999999996 679999999999998754    246789999999999999999999999999


Q ss_pred             CCCCCceEEEcCCCChHHHHHHHHHHHHHHh
Q 047971          339 SNYFQSEIVFFGIDNIHAMRESFARLRDYLD  369 (374)
Q Consensus       339 ~~Y~~~~~~f~~I~NIH~mr~S~~kl~~~~~  369 (374)
                      ++|++|+++|+||+|||+||+||.||+++|.
T Consensus       143 ~~Y~~~~~~f~~i~nih~vr~s~~kl~~~~~  173 (387)
T d1zsqa2         143 DAYQNAELVFLDIHNIHVMRESLRKLKEIVY  173 (387)
T ss_dssp             TTCTTEEEEECCCCCHHHHHHHHHHHHHHHS
T ss_pred             hcccCceeeeecccchHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999984
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dcxa1 b.55.1.13 (A:9-124) Uncharacterized protein Shew0819 {Shewanella loihica [TaxId: 359303]} Back     information, alignment and structure
>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure