Citrus Sinensis ID: 047977

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57
Protein Sequence
LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKNSY
Secondary Structure (PSIPRED)
ccccccccEEEccccccccccccEEEcccccccccccccccccccccEEEcccccEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEccccccEEcccccccccccccccccccccccccccccccccccccEEEEEcccccccccHHHHccccccccccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccEEccHHHHHcccccccEEEcccEEEEEccHHHccccccccccccccEEEEcccccccccccccEEEccccEEEEcccccccccccccccccccccccccccHHHHccccccEEccccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHccccccccEEEcccccccccccccHHccccccEEEccccccEEcccHHHHccccccEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHHcccccccEEEEccccccccccHHHcccccccEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEEccccccccccHHHHHccccccEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEccccccEEEccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccc
Coil and Loop (DISEMBL)
ldlshnnisgpippaigtlsnltfldlnnnlfegsipsemgdlselQYLSVYNnslngafpfqlsnlrkvryldlggnfletpdwskfsnmpslthlSLCYNELTLEFPSFILTCRNLTYLDLSLnklsgliperlftnlgkleylnltdnqfqgklspnvsklsnlTVLRLAtnkfsgpipgdiglmsNIQLVELFnnsftgqipsslgqlknlqHLDLRMNAlnstippelglctnLSFLALAMNQLsgglplslsnlsrlnelglsdnflsgeiSANLIGNWTELESLQIQnnsfmgnippeiGLLTKLQYLFLYrnhfsgpipseigkltslekldlsgnqlsgtipptlWNLTNLLSLQLFFNnlsgtippeigSMASLVAFDvntnqlhgelpeNISRLVNLNkfsvftnnfsgsipgdfgkfspslinvsfsnnsfsgelpyelcsgFALEEltvngnnftgslpacmrncsnlnrvrfdgnqftgnitrafgvhprldfirlsgnhfigeispdwgecrnlsnlqldrnkisggipaelgnltrlgvlsldsneltgknsy
Flexible Loop (DISEMBL)
ldlshnnisgpippaigTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPaelgnltrlgvlsldsneltgknsy
Low Complexity Region (SEG)
LDLSHNNISGPIPPAIGtlsnltfldlnnnlfEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMnqlsgglplslsnlsrlnelglsDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPtlwnltnllslqlffnnlsGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKNSY
Disordered region (IsUnstruct)
**************AIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLS************
Disordered Region (DISOPRED)
LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKNSY
Disordered Region (DISEMBL)
LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSN********
Disordered Region (DISPRO)
*DL*HNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGK***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKNSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	569	2.2.26 [Sep-21-2011]
Q9LP24	1120	Probable leucine-rich rep	yes	no	0.796	0.404	0.378	3e-82
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.977	0.444	0.352	1e-80
Q9LHP4	1141	Receptor-like protein kin	no	no	0.905	0.451	0.356	1e-78
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.748	0.407	0.403	3e-77
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.984	0.448	0.346	4e-77
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.947	0.489	0.356	8e-77
O49318	1124	Probable leucine-rich rep	no	no	0.903	0.457	0.343	5e-76
Q9FL28	1173	LRR receptor-like serine/	no	no	0.991	0.480	0.337	1e-74
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.833	0.435	0.392	3e-74
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.987	0.510	0.340	3e-73

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  306 bits (784), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 193/510 (37%), Positives = 285/510 (55%), Gaps = 57/510 (11%)

Query: 107 EFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSN 166
           +FP   ++  NL Y+DLS+N LSG IP + F NL KL Y +L+ N   G++SP++  L N
Sbjct: 95  DFP--FISLSNLAYVDLSMNLLSGTIPPQ-FGNLSKLIYFDLSTNHLTGEISPSLGNLKN 151

Query: 167 LTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN 226
           LTVL L  N  +  IP ++G M ++  + L  N  TG IPSSLG LKNL  L L  N L 
Sbjct: 152 LTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLT 211

Query: 227 STIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWT 286
             IPPELG   +++ LAL+ N+L+G +P +L NL  L  L L +N+L+G I    IGN  
Sbjct: 212 GVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPE-IGNME 270

Query: 287 ELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQL 346
            + +L +  N   G+IP  +G L  L  L L++N+ +G IP ++G + S+  L+LS N+L
Sbjct: 271 SMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKL 330

Query: 347 SGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPE------ 400
           +G+IP +L NL NL  L L+ N L+G IPPE+G+M S++   +N N+L G +P       
Sbjct: 331 TGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLK 390

Query: 401 ---------------------NISRLVNLNKFSVFTNNFSGSIPGDFGKFS--------- 430
                                N+  ++NL+   +  N  +GS+P  FG F+         
Sbjct: 391 NLTYLYLYLNYLTGVIPQELGNMESMINLD---LSQNKLTGSVPDSFGNFTKLESLYLRV 447

Query: 431 --------PSLINVS------FSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMR 476
                   P + N S         N+F+G  P  +C G  L+ ++++ N+  G +P  +R
Sbjct: 448 NHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLR 507

Query: 477 NCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDR 536
           +C +L R RF GN+FTG+I  AFG++P L+FI  S N F GEIS +W +   L  L +  
Sbjct: 508 DCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSN 567

Query: 537 NKISGGIPAELGNLTRLGVLSLDSNELTGK 566
           N I+G IP E+ N+T+L  L L +N L G+
Sbjct: 568 NNITGAIPTEIWNMTQLVELDLSTNNLFGE 597

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  301 bits (770), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 198/561 (35%), Positives = 302/561 (53%), Gaps = 5/561 (0%)

Query: 6   NNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLS 65
           N +SG IP  +G+L NL  L L +N   G+IP   G+L  LQ L++ +  L G  P +  
Sbjct: 130 NLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFG 189

Query: 66  NLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSL 125
            L +++ L L  N LE P  ++  N  SL   +  +N L    P+ +   +NL  L+L  
Sbjct: 190 RLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGD 249

Query: 126 NKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDI 185
           N  SG IP +L  +L  ++YLNL  NQ QG +   +++L+NL  L L++N  +G I  + 
Sbjct: 250 NSFSGEIPSQL-GDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEF 308

Query: 186 GLMSNIQLVELFNNSFTGQIPSSL-GQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLAL 244
             M+ ++ + L  N  +G +P ++     +L+ L L    L+  IP E+  C +L  L L
Sbjct: 309 WRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDL 368

Query: 245 AMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPP 304
           + N L+G +P SL  L  L  L L++N L G +S++ I N T L+   + +N+  G +P 
Sbjct: 369 SNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSS-ISNLTNLQEFTLYHNNLEGKVPK 427

Query: 305 EIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQ 364
           EIG L KL+ ++LY N FSG +P EIG  T L+++D  GN+LSG IP ++  L +L  L 
Sbjct: 428 EIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLH 487

Query: 365 LFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPG 424
           L  N L G IP  +G+   +   D+  NQL G +P +   L  L  F ++ N+  G++P 
Sbjct: 488 LRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPD 547

Query: 425 DFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRV 484
                  +L  ++FS+N F+G +   LC   +     V  N F G +P  +   +NL+R+
Sbjct: 548 SLINLK-NLTRINFSSNKFNGSIS-PLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRL 605

Query: 485 RFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIP 544
           R   NQFTG I R FG    L  + +S N   G I  + G C+ L+++ L+ N +SG IP
Sbjct: 606 RLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIP 665

Query: 545 AELGNLTRLGVLSLDSNELTG 565
             LG L  LG L L SN+  G
Sbjct: 666 TWLGKLPLLGELKLSSNKFVG 686

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  294 bits (752), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 202/566 (35%), Positives = 286/566 (50%), Gaps = 51/566 (9%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           LDLS N + G IP ++  L NL  L LN+N   G IP ++   S+L+ L +++N L G+ 
Sbjct: 134 LDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGSI 193

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           P +L  L  +  + +GGN                        E++ + PS I  C NLT 
Sbjct: 194 PTELGKLSGLEVIRIGGN-----------------------KEISGQIPSEIGDCSNLTV 230

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           L L+   +SG +P  L                          KL  L  L + T   SG 
Sbjct: 231 LGLAETSVSGNLPSSL-------------------------GKLKKLETLSIYTTMISGE 265

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
           IP D+G  S +  + L+ NS +G IP  +GQL  L+ L L  N+L   IP E+G C+NL 
Sbjct: 266 IPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLK 325

Query: 241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 300
            + L++N LSG +P S+  LS L E  +SDN  SG I    I N + L  LQ+  N   G
Sbjct: 326 MIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTT-ISNCSSLVQLQLDKNQISG 384

Query: 301 NIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNL 360
            IP E+G LTKL   F + N   G IP  +   T L+ LDLS N L+GTIP  L+ L NL
Sbjct: 385 LIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNL 444

Query: 361 LSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSG 420
             L L  N+LSG IP EIG+ +SLV   +  N++ GE+P  I  L  +N     +N   G
Sbjct: 445 TKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHG 504

Query: 421 SIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSN 480
            +P + G  S  L  +  SNNS  G LP  + S   L+ L V+ N F+G +PA +    +
Sbjct: 505 KVPDEIGSCS-ELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVS 563

Query: 481 LNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLS-NLQLDRNKI 539
           LN++    N F+G+I  + G+   L  + L  N   GEI  + G+  NL   L L  N++
Sbjct: 564 LNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRL 623

Query: 540 SGGIPAELGNLTRLGVLSLDSNELTG 565
           +G IP+++ +L +L +L L  N L G
Sbjct: 624 TGKIPSKIASLNKLSILDLSHNMLEG 649

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  289 bits (740), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 173/429 (40%), Positives = 249/429 (58%), Gaps = 3/429 (0%)

Query: 139 NLGKLEYLNLTDNQFQGKLSP-NVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELF 197
           +LG +  LNLT+   +G       S L NLT + L+ N+FSG I    G  S ++  +L 
Sbjct: 91  SLGSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLS 150

Query: 198 NNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSL 257
            N   G+IP  LG L NL  L L  N LN +IP E+G  T ++ +A+  N L+G +P S 
Sbjct: 151 INQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSF 210

Query: 258 SNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFL 317
            NL++L  L L  N LSG I +  IGN   L  L +  N+  G IP   G L  +  L +
Sbjct: 211 GNLTKLVNLYLFINSLSGSIPSE-IGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNM 269

Query: 318 YRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPE 377
           + N  SG IP EIG +T+L+ L L  N+L+G IP TL N+  L  L L+ N L+G+IPPE
Sbjct: 270 FENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPE 329

Query: 378 IGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVS 437
           +G M S++  +++ N+L G +P++  +L  L    +  N  SG IP      S  L  + 
Sbjct: 330 LGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIAN-STELTVLQ 388

Query: 438 FSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITR 497
              N+F+G LP  +C G  LE LT++ N+F G +P  +R+C +L RVRF GN F+G+I+ 
Sbjct: 389 LDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISE 448

Query: 498 AFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLS 557
           AFGV+P L+FI LS N+F G++S +W + + L    L  N I+G IP E+ N+T+L  L 
Sbjct: 449 AFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLD 508

Query: 558 LDSNELTGK 566
           L SN +TG+
Sbjct: 509 LSSNRITGE 517

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  289 bits (740), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 212/612 (34%), Positives = 310/612 (50%), Gaps = 52/612 (8%)

Query: 4   SHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQ 63
           + N ++G IP  +G L NL  L+L NN   G IPS++G++S+LQYLS+  N L G  P  
Sbjct: 223 AENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKS 282

Query: 64  LSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHL-------------SLCYN-------- 102
           L++L  ++ LDL  N L      +F NM  L  L             S+C N        
Sbjct: 283 LADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLV 342

Query: 103 ----ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLS 158
               +L+ E P  +  C++L  LDLS N L+G IPE LF  L +L  L L +N  +G LS
Sbjct: 343 LSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALF-ELVELTDLYLHNNTLEGTLS 401

Query: 159 PNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHL 218
           P++S L+NL  L L  N   G +P +I  +  ++++ L+ N F+G+IP  +G   +L+ +
Sbjct: 402 PSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMI 461

Query: 219 DLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEIS 278
           D+  N     IPP +G    L+ L L  N+L GGLP SL N  +LN L L+DN LSG I 
Sbjct: 462 DMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIP 521

Query: 279 ANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSG-------------- 324
           ++  G    LE L + NNS  GN+P  +  L  L  + L  N  +G              
Sbjct: 522 SSF-GFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSF 580

Query: 325 ---------PIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIP 375
                     IP E+G   +L++L L  NQL+G IP TL  +  L  L +  N L+GTIP
Sbjct: 581 DVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIP 640

Query: 376 PEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLIN 435
            ++     L   D+N N L G +P  + +L  L +  + +N F  S+P +    +  L+ 
Sbjct: 641 LQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLV- 699

Query: 436 VSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNI 495
           +S   NS +G +P E+ +  AL  L ++ N F+GSLP  M   S L  +R   N  TG I
Sbjct: 700 LSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEI 759

Query: 496 TRAFGVHPRLD-FIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLG 554
               G    L   + LS N+F G+I    G    L  L L  N+++G +P  +G++  LG
Sbjct: 760 PVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLG 819

Query: 555 VLSLDSNELTGK 566
            L++  N L GK
Sbjct: 820 YLNVSFNNLGGK 831

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  288 bits (737), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 202/567 (35%), Positives = 293/567 (51%), Gaps = 28/567 (4%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           LDLS+N +SG IP  IG  S+L  L LNNN F+G IP E+G L  L+ L +YNN ++G+ 
Sbjct: 102 LDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSL 161

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           P ++ NL  +  L    N +         N+  LT      N ++   PS I  C +L  
Sbjct: 162 PVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVM 221

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           L L+ N+LSG +P+ +   L KL  + L +N+F G +   +S  ++L  L L  N+  GP
Sbjct: 222 LGLAQNQLSGELPKEIGM-LKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGP 280

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
           IP ++G + +++ + L+ N   G IP  +G L     +D   NAL   IP ELG    L 
Sbjct: 281 IPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLE 340

Query: 241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 300
            L L  NQL+G +P+ LS L  L++L LS N L+G                         
Sbjct: 341 LLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGP------------------------ 376

Query: 301 NIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNL 360
            IP     L  L  L L++N  SG IP ++G  + L  LD+S N LSG IP  L   +N+
Sbjct: 377 -IPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNM 435

Query: 361 LSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSG 420
           + L L  NNLSG IP  I +  +LV   +  N L G  P N+ + VN+    +  N F G
Sbjct: 436 IILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRG 495

Query: 421 SIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSN 480
           SIP + G  S +L  +  ++N F+GELP E+     L  L ++ N  TG +P+ + NC  
Sbjct: 496 SIPREVGNCS-ALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKM 554

Query: 481 LNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS 540
           L R+    N F+G +    G   +L+ ++LS N+  G I    G    L+ LQ+  N  +
Sbjct: 555 LQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFN 614

Query: 541 GGIPAELGNLTRLGV-LSLDSNELTGK 566
           G IP ELG+LT L + L+L  N+LTG+
Sbjct: 615 GSIPRELGSLTGLQIALNLSYNKLTGE 641

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  285 bits (730), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 194/565 (34%), Positives = 286/565 (50%), Gaps = 51/565 (9%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           LDLS  N+SG + P+IG L NL +L+L  N   G IP E+G+ S+L+ + + NN   G+ 
Sbjct: 90  LDLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSI 149

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           P +++ L ++R  ++                        C N+L+   P  I    NL  
Sbjct: 150 PVEINKLSQLRSFNI------------------------CNNKLSGPLPEEIGDLYNLEE 185

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           L    N L+G +P R   NL KL       N F G +   + K  NL +L LA N  SG 
Sbjct: 186 LVAYTNNLTGPLP-RSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGE 244

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
           +P +IG++  +Q V L+ N F+G IP  +G L +L+ L L  N+L   IP E+G   +L 
Sbjct: 245 LPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLK 304

Query: 241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 300
            L L  NQL+G +P  L  LS++ E+  S+N LSGE                        
Sbjct: 305 KLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGE------------------------ 340

Query: 301 NIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNL 360
            IP E+  +++L+ L+L++N  +G IP+E+ KL +L KLDLS N L+G IPP   NLT++
Sbjct: 341 -IPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSM 399

Query: 361 LSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSG 420
             LQLF N+LSG IP  +G  + L   D + NQL G++P  I +  NL   ++ +N   G
Sbjct: 400 RQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFG 459

Query: 421 SIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSN 480
           +IP    +   SL+ +    N  +G+ P ELC    L  + ++ N F+G LP  +  C  
Sbjct: 460 NIPPGVLR-CKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQK 518

Query: 481 LNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS 540
           L R+    NQF+ N+         L    +S N   G I  +   C+ L  L L RN   
Sbjct: 519 LQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFI 578

Query: 541 GGIPAELGNLTRLGVLSLDSNELTG 565
           G +P ELG+L +L +L L  N  +G
Sbjct: 579 GSLPPELGSLHQLEILRLSENRFSG 603

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  281 bits (718), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 207/613 (33%), Positives = 309/613 (50%), Gaps = 49/613 (7%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           LDL +N +SG +P  I   S+L  +  + N   G IP  +GDL  LQ      N L G+ 
Sbjct: 149 LDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSI 208

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           P  +  L  +  LDL GN L       F N+ +L  L L  N L  + P+ I  C +L  
Sbjct: 209 PVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQ 268

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           L+L  N+L+G IP  L  NL +L+ L +  N+    +  ++ +L+ LT L L+ N   GP
Sbjct: 269 LELYDNQLTGKIPAEL-GNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGP 327

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
           I  +IG + +++++ L +N+FTG+ P S+  L+NL  L +  N ++  +P +LGL TNL 
Sbjct: 328 ISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLR 387

Query: 241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANL------------------- 281
            L+   N L+G +P S+SN + L  L LS N ++GEI                       
Sbjct: 388 NLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEI 447

Query: 282 ---IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEK 338
              I N + LE+L + +N+  G + P IG L KL+ L +  N  +GPIP EIG L  L  
Sbjct: 448 PDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNI 507

Query: 339 LDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL 398
           L L  N  +G IP  + NLT L  L+++ N+L G IP E+  M  L   D++ N+  G++
Sbjct: 508 LYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQI 567

Query: 399 PENISRLVNLNKFSVFTNNFSGSIPGDF---------------------GKFSPSLINVS 437
           P   S+L +L   S+  N F+GSIP                        G+   SL N+ 
Sbjct: 568 PALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQ 627

Query: 438 ----FSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTG 493
               FSNN  +G +P EL     ++E+ ++ N F+GS+P  ++ C N+  + F  N  +G
Sbjct: 628 LYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSG 687

Query: 494 NI-TRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTR 552
           +I    F     +  + LS N F GEI   +G   +L +L L  N ++G IP  L NL+ 
Sbjct: 688 HIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLST 747

Query: 553 LGVLSLDSNELTG 565
           L  L L SN L G
Sbjct: 748 LKHLKLASNNLKG 760

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  280 bits (715), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 193/492 (39%), Positives = 258/492 (52%), Gaps = 18/492 (3%)

Query: 74  DLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIP 133
           DL GN +ET              L+L  + L+ +  S I   ++L  LDLSLN  SGL+P
Sbjct: 72  DLSGNVVET--------------LNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLP 117

Query: 134 ERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQL 193
             L  N   LEYL+L++N F G++      L NLT L L  N  SG IP  +G +  +  
Sbjct: 118 STL-GNCTSLEYLDLSNNDFSGEVPDIFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVD 176

Query: 194 VELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGL 253
           + +  N+ +G IP  LG    L++L L  N LN ++P  L L  NL  L ++ N L G L
Sbjct: 177 LRMSYNNLSGTIPELLGNCSKLEYLALNNNKLNGSLPASLYLLENLGELFVSNNSLGGRL 236

Query: 254 PLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQ 313
               SN  +L  L LS N   G +    IGN + L SL +   +  G IP  +G+L K+ 
Sbjct: 237 HFGSSNCKKLVSLDLSFNDFQGGVPPE-IGNCSSLHSLVMVKCNLTGTIPSSMGMLRKVS 295

Query: 314 YLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGT 373
            + L  N  SG IP E+G  +SLE L L+ NQL G IPP L  L  L SL+LFFN LSG 
Sbjct: 296 VIDLSDNRLSGNIPQELGNCSSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGE 355

Query: 374 IPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSL 433
           IP  I  + SL    V  N L GELP  +++L +L K ++F N F G IP   G  + SL
Sbjct: 356 IPIGIWKIQSLTQMLVYNNTLTGELPVEVTQLKHLKKLTLFNNGFYGDIPMSLG-LNRSL 414

Query: 434 INVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTG 493
             V    N F+GE+P  LC G  L    +  N   G +PA +R C  L RVR + N+ +G
Sbjct: 415 EEVDLLGNRFTGEIPPHLCHGQKLRLFILGSNQLHGKIPASIRQCKTLERVRLEDNKLSG 474

Query: 494 NITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRL 553
            +   F     L ++ L  N F G I    G C+NL  + L +NK++G IP ELGNL  L
Sbjct: 475 -VLPEFPESLSLSYVNLGSNSFEGSIPRSLGSCKNLLTIDLSQNKLTGLIPPELGNLQSL 533

Query: 554 GVLSLDSNELTG 565
           G+L+L  N L G
Sbjct: 534 GLLNLSHNYLEG 545

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  276 bits (706), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 193/566 (34%), Positives = 285/566 (50%), Gaps = 4/566 (0%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           +DL+  N+SG + P I  L  L  L+++ N   G IP ++     L+ L +  N  +G  
Sbjct: 72  VDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVI 131

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           P QL+ +  ++ L L  N+L      +  N+ SL  L +  N LT   P  +   R L  
Sbjct: 132 PIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRI 191

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           +    N  SG+IP  + +    L+ L L +N  +G L   + KL NLT L L  N+ SG 
Sbjct: 192 IRAGRNGFSGVIPSEI-SGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGE 250

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
           IP  +G +S ++++ L  N FTG IP  +G+L  ++ L L  N L   IP E+G   + +
Sbjct: 251 IPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAA 310

Query: 241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 300
            +  + NQL+G +P    ++  L  L L +N L G I   L G  T LE L +  N   G
Sbjct: 311 EIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPREL-GELTLLEKLDLSINRLNG 369

Query: 301 NIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNL 360
            IP E+  L  L  L L+ N   G IP  IG  ++   LD+S N LSG IP        L
Sbjct: 370 TIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTL 429

Query: 361 LSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSG 420
           + L L  N LSG IP ++ +  SL    +  NQL G LP  +  L NL    +  N  SG
Sbjct: 430 ILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSG 489

Query: 421 SIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSN 480
           +I  D GK   +L  +  +NN+F+GE+P E+ +   +    ++ N  TG +P  + +C  
Sbjct: 490 NISADLGKLK-NLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVT 548

Query: 481 LNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS 540
           + R+   GN+F+G I +  G    L+ +RLS N   GEI   +G+   L  LQL  N +S
Sbjct: 549 IQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLS 608

Query: 541 GGIPAELGNLTRLGV-LSLDSNELTG 565
             IP ELG LT L + L++  N L+G
Sbjct: 609 ENIPVELGKLTSLQISLNISHNNLSG 634

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	569
255571222	1224	receptor protein kinase, putative [Ricin	0.936	0.435	0.686	0.0
224132304	1199	predicted protein [Populus trichocarpa]	0.991	0.470	0.692	0.0
224070124	1202	predicted protein [Populus trichocarpa]	0.991	0.469	0.674	0.0
224103093	1178	predicted protein [Populus trichocarpa]	0.992	0.479	0.671	0.0
359480048	1219	PREDICTED: probable LRR receptor-like se	0.989	0.461	0.648	0.0
359480046	1219	PREDICTED: probable LRR receptor-like se	0.989	0.461	0.643	0.0
225438015	1219	PREDICTED: probable LRR receptor-like se	0.989	0.461	0.640	0.0
224070104	1142	predicted protein [Populus trichocarpa]	0.961	0.478	0.656	0.0
356570668	1230	PREDICTED: probable LRR receptor-like se	0.992	0.459	0.625	0.0
225438011	1132	PREDICTED: probable leucine-rich repeat	0.994	0.5	0.626	0.0

>gi|255571222|ref|XP_002526561.1| receptor protein kinase, putative [Ricinus communis] gi|223534122|gb|EEF35839.1| receptor protein kinase, putative [Ricinus communis]

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/565 (68%), Positives = 457/565 (80%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
            DL +NNI G IP AI  LS LT+LDL++N FEGSIP EMG L+ELQ+L++Y N+LNG  
Sbjct: 102 FDLQNNNIGGVIPSAIINLSKLTYLDLSSNFFEGSIPVEMGRLAELQFLNLYYNNLNGTI 161

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           P+QLSNL+ VRYLDLG NF +TPDWSKFS+MPSL HLSL +NEL+  FP F+  CRNLT+
Sbjct: 162 PYQLSNLQNVRYLDLGANFFQTPDWSKFSSMPSLIHLSLFFNELSSGFPDFLSNCRNLTF 221

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           LDLS N+ +G++PE  +T+LGK+EYLNLT+N FQG LS N+SKLSNL  LRLA N FSG 
Sbjct: 222 LDLSSNQFTGMVPEWAYTDLGKIEYLNLTENSFQGPLSSNISKLSNLKHLRLANNNFSGQ 281

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
           IPG IG +S++Q+VELFNNSF G IPSSLG+L+NL+ LDLRMN LNSTIPPELGLCTNL+
Sbjct: 282 IPGSIGFLSDLQIVELFNNSFIGNIPSSLGRLRNLESLDLRMNDLNSTIPPELGLCTNLT 341

Query: 241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 300
           +LALA+NQLSG LPLSL+NL+++ +LGLSDN L+GEIS  L  NWTEL SLQ+QNN   G
Sbjct: 342 YLALALNQLSGELPLSLANLTKMVDLGLSDNVLTGEISPYLFSNWTELFSLQLQNNMLSG 401

Query: 301 NIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNL 360
           +IP EIG LTKL  LFLY N  SG IP EIG L  L  L++SGNQLSG IPPTLWNLTNL
Sbjct: 402 HIPSEIGQLTKLNLLFLYNNTLSGSIPFEIGNLKDLGTLEISGNQLSGPIPPTLWNLTNL 461

Query: 361 LSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSG 420
             + LF NN+SG IPP+IG+M +L   D++ NQL+GELPE ISRL +L   ++FTNNFSG
Sbjct: 462 QVMNLFSNNISGIIPPDIGNMTALTLLDLSGNQLYGELPETISRLSSLQSINLFTNNFSG 521

Query: 421 SIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSN 480
           SIP DFGK+SPSL   SFS+NSF GELP E+CSG AL++ TVN NNFTGSLP C+RNCS 
Sbjct: 522 SIPSDFGKYSPSLSYASFSDNSFFGELPPEICSGLALKQFTVNDNNFTGSLPTCLRNCSG 581

Query: 481 LNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS 540
           L RVR DGNQFTGNIT AFGVHP L FI LSGN FIGEISP WGEC NL+N  +DRN+IS
Sbjct: 582 LTRVRLDGNQFTGNITDAFGVHPGLYFISLSGNQFIGEISPVWGECENLTNFHIDRNRIS 641

Query: 541 GGIPAELGNLTRLGVLSLDSNELTG 565
           G IPAELG LT+LG L+LDSN+LTG
Sbjct: 642 GEIPAELGKLTKLGALTLDSNDLTG 666

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132304|ref|XP_002321306.1| predicted protein [Populus trichocarpa] gi|222862079|gb|EEE99621.1| predicted protein [Populus trichocarpa]

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/565 (69%), Positives = 453/565 (80%), Gaps = 1/565 (0%)

Query: 2   DLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFP 61
           D+ +N +SG IP AIG LS L +LDL+ N FEGSIP E+ +L+ELQYLS++NN+LNG  P
Sbjct: 105 DIQNNTVSGAIPSAIGGLSKLIYLDLSVNFFEGSIPVEISELTELQYLSLFNNNLNGTIP 164

Query: 62  FQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYL 121
            QLSNL KVR+LDLG N+LETPDWSKFS MPSL +LSL +NELT EFP FI +CRNLT+L
Sbjct: 165 SQLSNLLKVRHLDLGANYLETPDWSKFS-MPSLEYLSLFFNELTSEFPDFITSCRNLTFL 223

Query: 122 DLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPI 181
           DLSLN  +G IPE  +TNLGKLE LNL +N FQG LSP +S LSNL  L L TN   G I
Sbjct: 224 DLSLNNFTGQIPELAYTNLGKLETLNLYNNLFQGPLSPKISMLSNLKSLSLQTNLLGGQI 283

Query: 182 PGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSF 241
           P  IG +S ++  ELF+NSF G IPSSLG+LK+L+ LDLRMNALNSTIPPELGLCTNL++
Sbjct: 284 PESIGSISGLRTAELFSNSFQGTIPSSLGKLKHLEKLDLRMNALNSTIPPELGLCTNLTY 343

Query: 242 LALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGN 301
           LALA NQLSG LPLSLSNLS++ +LGLS+NF SGEIS  LI NWTEL S Q+QNN+F GN
Sbjct: 344 LALADNQLSGELPLSLSNLSKIADLGLSENFFSGEISPALISNWTELTSFQVQNNNFSGN 403

Query: 302 IPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLL 361
           IPPEIG LT LQ+LFLY N FSG IP EIG L  L  LDLSGNQLSG IPPTLWNLTNL 
Sbjct: 404 IPPEIGQLTMLQFLFLYNNSFSGSIPHEIGNLEELTSLDLSGNQLSGPIPPTLWNLTNLE 463

Query: 362 SLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGS 421
           +L LFFNN++GTIPPE+G+M +L   D+NTNQLHGELPE IS L  L   ++F NNFSGS
Sbjct: 464 TLNLFFNNINGTIPPEVGNMTALQILDLNTNQLHGELPETISNLTFLTSINLFGNNFSGS 523

Query: 422 IPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNL 481
           IP +FGK  PSL+  SFSNNSFSGELP ELCSG +L++LTVN NNFTG+LP C+RNC  L
Sbjct: 524 IPSNFGKNIPSLVYASFSNNSFSGELPPELCSGLSLQQLTVNSNNFTGALPTCLRNCLGL 583

Query: 482 NRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISG 541
            RVR +GNQFTGNIT AFGV P L F+ L+ N FIGEISPDWG C NL+NLQ+ RN+ISG
Sbjct: 584 TRVRLEGNQFTGNITHAFGVLPNLVFVALNDNQFIGEISPDWGACENLTNLQMGRNRISG 643

Query: 542 GIPAELGNLTRLGVLSLDSNELTGK 566
            IPAELG L RLG+LSLDSN+LTG+
Sbjct: 644 EIPAELGKLPRLGLLSLDSNDLTGR 668

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070124|ref|XP_002303118.1| predicted protein [Populus trichocarpa] gi|222844844|gb|EEE82391.1| predicted protein [Populus trichocarpa]

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/565 (67%), Positives = 443/565 (78%), Gaps = 1/565 (0%)

Query: 2   DLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFP 61
           D+  NN++G IP AIG+LS LT LDL+ N FEGSIP E+  L+ELQYLS+YNN+LNG  P
Sbjct: 104 DIQSNNVNGTIPSAIGSLSKLTHLDLSANFFEGSIPVEISQLTELQYLSLYNNNLNGIIP 163

Query: 62  FQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYL 121
           FQL+NL KVR+LDLG N+LE PDWSKFS MPSL +LS   NELT EFP FI  CRNLT+L
Sbjct: 164 FQLANLPKVRHLDLGANYLENPDWSKFS-MPSLEYLSFFLNELTAEFPHFITNCRNLTFL 222

Query: 122 DLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPI 181
           DLSLNK +G IPE ++TNLGKLE LNL +N FQG LS N+SKLSNL  + L  N   G I
Sbjct: 223 DLSLNKFTGQIPELVYTNLGKLEALNLYNNSFQGPLSSNISKLSNLKNISLQYNLLRGQI 282

Query: 182 PGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSF 241
           P  IG +S +Q+VEL  NSF G IP S+GQLK+L+ LDLRMNALNSTIPPELGLCTNL++
Sbjct: 283 PESIGSISGLQIVELLGNSFQGNIPPSIGQLKHLEKLDLRMNALNSTIPPELGLCTNLTY 342

Query: 242 LALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGN 301
           LALA NQLSG LPLSLSNLS++ ++GLS+N LSGEIS  LI NWTEL SLQ+QNN F GN
Sbjct: 343 LALADNQLSGELPLSLSNLSKIADMGLSENSLSGEISPTLISNWTELISLQVQNNLFSGN 402

Query: 302 IPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLL 361
           IPPEIG LT LQYLFLY N FSG IP EIG L  L  LDLSGNQLSG +PP LWNLTNL 
Sbjct: 403 IPPEIGKLTMLQYLFLYNNTFSGSIPPEIGNLKELLSLDLSGNQLSGPLPPALWNLTNLQ 462

Query: 362 SLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGS 421
            L LF NN++G IPPE+G++  L   D+NTNQLHGELP  IS + +L   ++F NN SGS
Sbjct: 463 ILNLFSNNINGKIPPEVGNLTMLQILDLNTNQLHGELPLTISDITSLTSINLFGNNLSGS 522

Query: 422 IPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNL 481
           IP DFGK+ PSL   SFSNNSFSGELP ELC G +L++ TVN N+FTGSLP C+RNCS L
Sbjct: 523 IPSDFGKYMPSLAYASFSNNSFSGELPPELCRGRSLQQFTVNSNSFTGSLPTCLRNCSEL 582

Query: 482 NRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISG 541
           +RVR + N+FTGNIT AFGV P L F+ LS N FIGEISPDWGEC+NL+NLQ+D N+ISG
Sbjct: 583 SRVRLEKNRFTGNITDAFGVLPNLVFVALSDNQFIGEISPDWGECKNLTNLQMDGNRISG 642

Query: 542 GIPAELGNLTRLGVLSLDSNELTGK 566
            IPAELG L +L VLSL SN+L G+
Sbjct: 643 EIPAELGKLPQLRVLSLGSNDLAGR 667

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103093|ref|XP_002334092.1| predicted protein [Populus trichocarpa] gi|222869551|gb|EEF06682.1| predicted protein [Populus trichocarpa]

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/566 (67%), Positives = 444/566 (78%), Gaps = 1/566 (0%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
            D+ +N ++G IP AIG+LSNLT LDL+ N FEGSIP E+  L+ELQYLS+YNN+LNG  
Sbjct: 102 FDIQNNKVNGTIPSAIGSLSNLTHLDLSVNFFEGSIPVEISQLTELQYLSLYNNNLNGII 161

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           PFQL+NL KVR+LDLG N+LE PDWS FS MPSL +LS   NELT EFP FI  CRNLT+
Sbjct: 162 PFQLANLPKVRHLDLGANYLENPDWSNFS-MPSLEYLSFFLNELTAEFPHFITNCRNLTF 220

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           LDLSLNK +G IPE ++TNLGKLE LNL +N FQG LS N+SKLSNL  + L  N  SG 
Sbjct: 221 LDLSLNKFTGQIPELVYTNLGKLEALNLYNNSFQGPLSSNISKLSNLKNISLQYNLLSGQ 280

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
           IP  IG +S +Q+VELF NSF G IP S+GQLK+L+ LDLRMNALNSTIPPELGLCTNL+
Sbjct: 281 IPESIGSISGLQIVELFGNSFQGNIPPSIGQLKHLEKLDLRMNALNSTIPPELGLCTNLT 340

Query: 241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 300
           +L LA NQLSG LPLSLSNL+++ ++GLS+N LSGEIS  LI NWTEL SLQ+QNN F G
Sbjct: 341 YLTLADNQLSGELPLSLSNLAKIADMGLSENSLSGEISPTLISNWTELISLQVQNNLFSG 400

Query: 301 NIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNL 360
           NIPPEIG LT LQYLFLY N FSG IP EIG L  L  LDLSGNQLSG +PP LWNLTNL
Sbjct: 401 NIPPEIGKLTMLQYLFLYNNTFSGSIPPEIGNLKELLSLDLSGNQLSGPLPPALWNLTNL 460

Query: 361 LSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSG 420
             L LF NN++G IPPE+G++  L   D+NTNQLHGELP  IS + +L   ++F NN SG
Sbjct: 461 QILNLFSNNINGKIPPEVGNLTMLQILDLNTNQLHGELPLTISDITSLTSINLFGNNLSG 520

Query: 421 SIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSN 480
           SIP DFGK+ PSL   SFSNNSFSGELP ELC G +L++ TVN N+FTGSLP C+RNCS 
Sbjct: 521 SIPSDFGKYMPSLAYASFSNNSFSGELPPELCRGRSLQQFTVNSNSFTGSLPTCLRNCSE 580

Query: 481 LNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS 540
           L+RVR + N+FTGNIT AFGV P L F+ LS N FIGEISPDWGEC+NL+NLQ+D N+IS
Sbjct: 581 LSRVRLEKNRFTGNITDAFGVLPNLVFVALSDNQFIGEISPDWGECKNLTNLQMDGNRIS 640

Query: 541 GGIPAELGNLTRLGVLSLDSNELTGK 566
           G IPAELG L +L VLSL SN+L G+
Sbjct: 641 GEIPAELGKLPQLRVLSLGSNDLAGR 666

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480048|ref|XP_003632391.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/564 (64%), Positives = 448/564 (79%), Gaps = 1/564 (0%)

Query: 4   SHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQ 63
           S++ ++G IP  I  LS LTFLDL++N F+G+I SE+G L+EL YLS Y+N L G  P+Q
Sbjct: 106 SNSKLNGSIPSTIYNLSKLTFLDLSHNFFDGNITSEIGGLTELLYLSFYDNYLVGTIPYQ 165

Query: 64  LSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDL 123
           ++NL+K+ YLDLG N+L++PDWSKFS+MP LT LS  YNEL  EFP FI  CRNLTYLDL
Sbjct: 166 ITNLQKMWYLDLGSNYLQSPDWSKFSSMPLLTRLSFNYNELVSEFPGFITDCRNLTYLDL 225

Query: 124 SLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPG 183
           + N+L+G IPE +F+NLGKLE+LN TDN FQG LS N+S+LS L  LRL  N+FSG IP 
Sbjct: 226 AQNQLTGAIPESVFSNLGKLEFLNFTDNSFQGPLSSNISRLSKLQNLRLGRNQFSGSIPE 285

Query: 184 DIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLA 243
           +IG +S+++++E++NNSF GQIPSS+GQL+ LQ LD++ NALNS IP ELG CTNL+FL+
Sbjct: 286 EIGTLSDLEILEMYNNSFEGQIPSSIGQLRKLQILDIQRNALNSKIPSELGSCTNLTFLS 345

Query: 244 LAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIP 303
           LA+N L G +P S +NL++++ELGLSDNFLSGEIS   I NWTEL SLQ+QNNSF G IP
Sbjct: 346 LAVNSLYGVIPSSFTNLNKISELGLSDNFLSGEISPYFITNWTELISLQVQNNSFTGKIP 405

Query: 304 PEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSL 363
            EIGLL KL YLFLY N  SG IPSEIG L  L +LDLS NQLSG IP   WNLT L +L
Sbjct: 406 SEIGLLEKLNYLFLYNNMLSGAIPSEIGNLKDLLQLDLSQNQLSGPIPVVEWNLTQLTTL 465

Query: 364 QLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIP 423
            L+ NNL+GTIPPEIG++ SL   D+NTN+LHGELPE +S L NL + SVFTNNFSG+IP
Sbjct: 466 HLYENNLTGTIPPEIGNLTSLTVLDLNTNKLHGELPETLSLLNNLERLSVFTNNFSGTIP 525

Query: 424 GDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVN-GNNFTGSLPACMRNCSNLN 482
            + GK S +L+ VSFSNNSFSGELP  LC+G AL+ LTVN GNNFTG LP C+RNC+ L 
Sbjct: 526 TELGKNSLNLMYVSFSNNSFSGELPPGLCNGLALQYLTVNGGNNFTGPLPDCLRNCTGLT 585

Query: 483 RVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGG 542
           RVR +GNQFTG I+ AFGVHP L F+ LSGN F GEISP+WGEC+ L++LQ+D NKISG 
Sbjct: 586 RVRLEGNQFTGGISEAFGVHPSLVFLSLSGNRFSGEISPEWGECQKLTSLQVDGNKISGE 645

Query: 543 IPAELGNLTRLGVLSLDSNELTGK 566
           IPAELG L++LGVLSLDSNEL+G+
Sbjct: 646 IPAELGKLSQLGVLSLDSNELSGQ 669

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480046|ref|XP_002270822.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/564 (64%), Positives = 450/564 (79%), Gaps = 1/564 (0%)

Query: 4   SHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQ 63
           +++ ++G IP  I  LS LTFLDL++N F+G+I SE+G L+EL YLS Y+N   G  P+Q
Sbjct: 106 TNSKLNGSIPSTICNLSKLTFLDLSHNFFDGNITSEIGGLTELLYLSFYDNYFVGTIPYQ 165

Query: 64  LSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDL 123
           ++NL+K+ YLDLG N+L++PDWSKFS+MP LT LS  YNEL  EFP FI  C NLTYLDL
Sbjct: 166 ITNLQKMWYLDLGSNYLQSPDWSKFSSMPLLTRLSFNYNELASEFPGFITDCWNLTYLDL 225

Query: 124 SLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPG 183
           + N+L+G IPE +F NLGKLE+L+LTDN F+G LS N+S+LS L  LRL TN+FSGPIP 
Sbjct: 226 ADNQLTGAIPESVFGNLGKLEFLSLTDNSFRGPLSSNISRLSKLQKLRLGTNQFSGPIPE 285

Query: 184 DIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLA 243
           +IG +S++Q++E++NNSF GQIPSS+GQL+ LQ LDL+ NALNS+IP ELG CTNL+FLA
Sbjct: 286 EIGTLSDLQMLEMYNNSFEGQIPSSIGQLRKLQILDLKSNALNSSIPSELGSCTNLTFLA 345

Query: 244 LAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIP 303
           +A+N LSG +PLS +N ++++ LGLSDN LSGEIS + I NWTEL SLQIQNN+F G IP
Sbjct: 346 VAVNSLSGVIPLSFTNFNKISALGLSDNSLSGEISPDFITNWTELTSLQIQNNNFTGKIP 405

Query: 304 PEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSL 363
            EIGLL KL YLFL  N F+G IPSEIG L  L KLDLS NQ SG IPP  WNLT L  L
Sbjct: 406 SEIGLLEKLNYLFLCNNGFNGSIPSEIGNLKELLKLDLSKNQFSGPIPPVEWNLTKLELL 465

Query: 364 QLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIP 423
           QL+ NNLSGT+PPEIG++ SL   D++TN+L GELPE +S L NL K SVFTNNFSG+IP
Sbjct: 466 QLYENNLSGTVPPEIGNLTSLKVLDLSTNKLLGELPETLSILNNLEKLSVFTNNFSGTIP 525

Query: 424 GDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVN-GNNFTGSLPACMRNCSNLN 482
            + GK S  L++VSF+NNSFSGELP  LC+GFAL+ LTVN GNNFTG LP C+RNC+ L 
Sbjct: 526 IELGKNSLKLMHVSFANNSFSGELPPGLCNGFALQHLTVNGGNNFTGPLPDCLRNCTGLT 585

Query: 483 RVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGG 542
           RVR +GNQFTG+I++AFGVHP L F+ LSGN F GE+SP+WGEC+ L++LQ+D NKISG 
Sbjct: 586 RVRLEGNQFTGDISKAFGVHPSLVFLSLSGNRFSGELSPEWGECQKLTSLQVDGNKISGV 645

Query: 543 IPAELGNLTRLGVLSLDSNELTGK 566
           IPAELG L++L VLSLDSNEL+G+
Sbjct: 646 IPAELGKLSQLRVLSLDSNELSGQ 669

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438015|ref|XP_002270968.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/564 (64%), Positives = 447/564 (79%), Gaps = 1/564 (0%)

Query: 4   SHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQ 63
           S++ ++G IP  I  LS LTFLDL++N F+G+I SE+G L+EL YLS Y+N L G  P+Q
Sbjct: 106 SNSKLNGSIPSTIYNLSKLTFLDLSHNFFDGNITSEIGGLTELLYLSFYDNYLVGTIPYQ 165

Query: 64  LSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDL 123
           ++NL+K+ YLDLG N+L++PDWSKFS+MP LT LS  YN L  EFP FI  C NLTYLDL
Sbjct: 166 ITNLQKMWYLDLGSNYLQSPDWSKFSSMPLLTRLSFNYNTLASEFPGFITDCWNLTYLDL 225

Query: 124 SLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPG 183
           + N+L+G IPE +F+NLGKLE+LNLTDN F+G LS N+S+LS L  LRL  N+FSG IP 
Sbjct: 226 AQNQLTGAIPESVFSNLGKLEFLNLTDNSFRGPLSSNISRLSKLQNLRLGRNQFSGSIPE 285

Query: 184 DIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLA 243
           +IG +S+++++E++NNSF GQIPSS+GQL+ LQ LD++ NALNSTIP ELG CTNL+FL+
Sbjct: 286 EIGTLSDLEILEMYNNSFEGQIPSSIGQLRKLQILDIQRNALNSTIPSELGSCTNLTFLS 345

Query: 244 LAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIP 303
           LA+N LSG +P S +NL++++ELGLSDNFLSGEIS   I NWT L SLQ+QNNSF G IP
Sbjct: 346 LAVNSLSGVIPSSFTNLNKISELGLSDNFLSGEISPYFITNWTGLISLQVQNNSFTGKIP 405

Query: 304 PEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSL 363
            EIGLL KL YLFLY N  SG IPSEIG L  L +LDLS NQLSG IP   WNLT L +L
Sbjct: 406 SEIGLLEKLNYLFLYNNMLSGAIPSEIGNLKDLLQLDLSQNQLSGPIPVVEWNLTQLTTL 465

Query: 364 QLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIP 423
            L+ NNL+GTIPPEIG++ SL   D+NTN+LHGELPE +S L NL + SVFTNNFSG+IP
Sbjct: 466 HLYENNLTGTIPPEIGNLTSLTVLDLNTNKLHGELPETLSLLNNLERLSVFTNNFSGTIP 525

Query: 424 GDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVN-GNNFTGSLPACMRNCSNLN 482
            + GK +  L  VSF+NNSFSGELP  LC+GFAL+ LTVN GNNFTG LP C+RNC+ L 
Sbjct: 526 TELGKNNLKLTLVSFANNSFSGELPPGLCNGFALQNLTVNGGNNFTGPLPDCLRNCTGLT 585

Query: 483 RVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGG 542
           RVR +GNQFTG+I++AFGVHP L F+ LSGN F GE+SP+WGEC+ L++LQ+D NKISG 
Sbjct: 586 RVRLEGNQFTGDISKAFGVHPSLVFLSLSGNRFSGELSPEWGECQKLTSLQVDGNKISGE 645

Query: 543 IPAELGNLTRLGVLSLDSNELTGK 566
           +PAELG L+ LG LSLDSNEL+G+
Sbjct: 646 VPAELGKLSHLGFLSLDSNELSGQ 669

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070104|ref|XP_002303115.1| predicted protein [Populus trichocarpa] gi|222844841|gb|EEE82388.1| predicted protein [Populus trichocarpa]

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/565 (65%), Positives = 430/565 (76%), Gaps = 18/565 (3%)

Query: 2   DLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFP 61
           D+  NN++G IP AIG+LS LT LDL+ NLFEGSIP E+  L+ELQYLS+YNN+LNG  P
Sbjct: 104 DIQSNNVNGTIPSAIGSLSKLTHLDLSANLFEGSIPVEISQLTELQYLSLYNNNLNGIIP 163

Query: 62  FQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYL 121
           FQL+NL KVR+LDLG N+LE PDWS FS MPSL +LS   NELT EFP FI  CRNLT+L
Sbjct: 164 FQLANLPKVRHLDLGANYLENPDWSNFS-MPSLEYLSFFLNELTAEFPHFITNCRNLTFL 222

Query: 122 DLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPI 181
           DLSLNK +G IPE ++TNLGKLE LNL +N FQG LS N+SKLSNL  + L  N  SG I
Sbjct: 223 DLSLNKFTGQIPELVYTNLGKLEALNLYNNSFQGPLSSNISKLSNLKNISLQNNLLSGQI 282

Query: 182 PGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSF 241
           P  IG +S +Q+VELF+NSF G IPSS+G+LK+L+ LDLR+NALNSTIPPELGLCTNL++
Sbjct: 283 PESIGSISGLQIVELFSNSFQGNIPSSIGKLKHLEKLDLRINALNSTIPPELGLCTNLTY 342

Query: 242 LALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGN 301
           LALA NQL G LPLSLSNLS++ ++GLS+N LSGEIS  LI NWTEL SLQ+QNN F GN
Sbjct: 343 LALADNQLRGELPLSLSNLSKIADMGLSENSLSGEISPTLISNWTELISLQVQNNLFSGN 402

Query: 302 IPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLL 361
           IPPEIG LT LQYLFLY N FSG IP EIG L  L  LDLSGNQLSG +PP LWNLTNL 
Sbjct: 403 IPPEIGKLTMLQYLFLYNNTFSGSIPPEIGNLKELLSLDLSGNQLSGPLPPPLWNLTNLQ 462

Query: 362 SLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGS 421
            L LF NN++G IP E+G++  L   D+NTNQLHGELP  IS + +L   ++F NN SGS
Sbjct: 463 ILNLFSNNITGKIPSEVGNLTMLQILDLNTNQLHGELPLTISDITSLTSINLFGNNLSGS 522

Query: 422 IPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNL 481
           IP DFGK+ PSL   SFSNNSFSGELP EL                  SLP C+RNCS L
Sbjct: 523 IPSDFGKYMPSLAYASFSNNSFSGELPPELW-----------------SLPTCLRNCSKL 565

Query: 482 NRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISG 541
            RVR + N+F GNIT AFGV P L F+ LS N FIGEISPDWGEC+NL+NLQ+D N+ISG
Sbjct: 566 TRVRLEENRFAGNITNAFGVLPNLVFVALSDNQFIGEISPDWGECKNLTNLQMDGNRISG 625

Query: 542 GIPAELGNLTRLGVLSLDSNELTGK 566
            IPAELG L +L VLSL SNELTG+
Sbjct: 626 EIPAELGKLPQLQVLSLGSNELTGR 650

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570668|ref|XP_003553507.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Glycine max]

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/566 (62%), Positives = 433/566 (76%), Gaps = 1/566 (0%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L+L+HNN  G IP AIG LS L+ LDL NNLFE ++P+E+G L ELQYLS YNN+LNG  
Sbjct: 105 LNLNHNNFEGSIPSAIGNLSKLSLLDLGNNLFEETLPNELGQLRELQYLSFYNNNLNGTI 164

Query: 61  PFQLSNLRKVRYLDLGGN-FLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119
           P+QL NL KV Y+DLG N F+  PDWS++S MPSLT L L  N  T EFPSFIL C+NL+
Sbjct: 165 PYQLMNLPKVWYMDLGSNYFITPPDWSQYSGMPSLTRLGLHLNVFTGEFPSFILECQNLS 224

Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSG 179
           YLD+S N  +G IPE +++NL KLEYLNLT+    GKLSPN+S LSNL  LR+  N F+G
Sbjct: 225 YLDISQNHWTGTIPESMYSNLPKLEYLNLTNTGLIGKLSPNLSMLSNLKELRMGNNMFNG 284

Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNL 239
            +P +IGL+S +Q++EL N    G+IPSSLGQL+ L  LDL +N LNSTIP ELGLC NL
Sbjct: 285 SVPTEIGLISGLQILELNNIFAHGKIPSSLGQLRELWRLDLSINFLNSTIPSELGLCANL 344

Query: 240 SFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFM 299
           SFL+LA+N LSG LPLSL+NL++++ELGLSDN  SG+ SA+LI NWT+L SLQ+QNNSF 
Sbjct: 345 SFLSLAVNSLSGPLPLSLANLAKISELGLSDNSFSGQFSASLISNWTQLISLQVQNNSFT 404

Query: 300 GNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTN 359
           G IPP+IGLL K+ +L+LY N FSGPIP EIG L  + +LDLS NQ SG IP TLWNLTN
Sbjct: 405 GRIPPQIGLLKKINFLYLYNNQFSGPIPVEIGNLKEMIELDLSQNQFSGPIPLTLWNLTN 464

Query: 360 LLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFS 419
           +  L LFFN+LSGTIP +IG++ SL  FDVNTN LHGELPE I++L  L KFSVFTNNF+
Sbjct: 465 IQVLNLFFNDLSGTIPMDIGNLTSLQIFDVNTNNLHGELPETIAQLTALKKFSVFTNNFT 524

Query: 420 GSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCS 479
           GS+P +FGK +PSL ++  SNNSFSGELP  LCS   L  L VN N+F+G LP  +RNCS
Sbjct: 525 GSLPREFGKSNPSLTHIYLSNNSFSGELPPGLCSDGKLTILAVNNNSFSGPLPKSLRNCS 584

Query: 480 NLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKI 539
           +L R+R D NQFTGNIT +FGV   L FI LSGN  +GE+SP+WGEC NL+ +++  NK+
Sbjct: 585 SLIRIRLDDNQFTGNITDSFGVLSNLVFISLSGNQLVGELSPEWGECVNLTEMEMGSNKL 644

Query: 540 SGGIPAELGNLTRLGVLSLDSNELTG 565
           SG IP+ELG L +LG LSL SNE TG
Sbjct: 645 SGKIPSELGKLIQLGHLSLHSNEFTG 670

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438011|ref|XP_002270684.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930-like [Vitis vinifera]

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/567 (62%), Positives = 435/567 (76%), Gaps = 1/567 (0%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L+L+ N + G IP A+  LS LTFLD+ +NLF G I SE+G L+EL+YLS+++N L G  
Sbjct: 99  LNLNTNRLKGSIPTAVANLSKLTFLDMGSNLFSGRITSEIGQLTELRYLSLHDNYLIGDI 158

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           P+Q++NL+KV YLDLG N+L +PDWS+F  MP LTHLS  +N+L LEFP FI  CRNLTY
Sbjct: 159 PYQITNLQKVWYLDLGSNYLVSPDWSRFLGMPLLTHLSFNFNDLILEFPEFITDCRNLTY 218

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           LDLS N  +G IPE +F+NL KLE+L L +N FQG LSPN+S+LSNL  LRL  N+FSGP
Sbjct: 219 LDLSQNYFTGPIPEWVFSNLVKLEFLYLFENSFQGLLSPNISRLSNLQNLRLGRNQFSGP 278

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
           IP DIG++S++Q +E+++N F G+IPSS+GQL+ LQ LDL MN LNSTIP ELGLCT+L+
Sbjct: 279 IPEDIGMISDLQNIEMYDNWFEGKIPSSIGQLRKLQGLDLHMNGLNSTIPTELGLCTSLT 338

Query: 241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 300
           FL LAMN L+G LPLSL+NLS ++ELGL+DNFLSG IS+ LI NWTEL SLQ+QNN F G
Sbjct: 339 FLNLAMNSLTGVLPLSLTNLSMISELGLADNFLSGVISSYLITNWTELISLQLQNNLFSG 398

Query: 301 NIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNL 360
            IP EIGLLTKL YLFLY N   G IPSEIG L  L +LDLS N LSG IP  + NLT L
Sbjct: 399 KIPLEIGLLTKLNYLFLYNNTLYGSIPSEIGNLKDLFELDLSENHLSGPIPLAVGNLTKL 458

Query: 361 LSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSG 420
             L+LF NNLSG IP EIG++ SL   D+NTN+LHGELPE +S L NL + S+FTNNFSG
Sbjct: 459 TRLELFSNNLSGKIPMEIGNLKSLKVLDLNTNKLHGELPETLSLLNNLERLSMFTNNFSG 518

Query: 421 SIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVN-GNNFTGSLPACMRNCS 479
           +IP + GK S  L+ VSF+NNSFSGELP  LC+GFAL+ LTVN GNNFTG LP C+RNC+
Sbjct: 519 TIPTELGKNSLKLMYVSFTNNSFSGELPPGLCNGFALQYLTVNGGNNFTGPLPDCLRNCT 578

Query: 480 NLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKI 539
            L +VR +GNQFTGNI+  FGVH  L FI LSGN F G +SP WGEC+NL+ LQ+D N+I
Sbjct: 579 GLTQVRLEGNQFTGNISEVFGVHRSLKFISLSGNRFSGVLSPKWGECQNLTILQMDGNQI 638

Query: 540 SGGIPAELGNLTRLGVLSLDSNELTGK 566
           SG IP E  N   L +L L +N+L+G+
Sbjct: 639 SGKIPVEFVNCVLLLILKLRNNDLSGE 665

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	569
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.910	0.462	0.339	8.8e-77
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.985	0.448	0.314	1.6e-72
TAIR|locus:2161825	1090	AT5G56040 [Arabidopsis thalian	0.984	0.513	0.330	1.6e-70
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.924	0.460	0.335	1.1e-69
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.978	0.474	0.322	1.6e-69
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.978	0.490	0.316	1.7e-68
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.984	0.498	0.319	1.5e-67
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.985	0.449	0.318	2e-67
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.748	0.407	0.361	1.1e-66
TAIR|locus:2007918	1088	PEPR2 "PEP1 receptor 2" [Arabi	0.811	0.424	0.362	3.1e-65

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 776 (278.2 bits), Expect = 8.8e-77, P = 8.8e-77
 Identities = 177/522 (33%), Positives = 269/522 (51%)

Query:    46 LQYLSVYNNSLNGAFP-FQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNEL 104
             ++ L++ N  + G F  F   +L  + Y+DL  N L      +F N+  L +  L  N L
Sbjct:    79 IEELNLTNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHL 138

Query:   105 TLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKL 164
             T E    +   +NLT L L  N L+ +IP  L  N+  +  L L+ N+  G +  ++  L
Sbjct:   139 TGEISPSLGNLKNLTVLYLHQNYLTSVIPSEL-GNMESMTDLALSQNKLTGSIPSSLGNL 197

Query:   165 SNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA 224
              NL VL L  N  +G IP ++G M ++  + L  N  TG IPS+LG LKNL  L L  N 
Sbjct:   198 KNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENY 257

Query:   225 LNSTIPPELGLCTNLSFLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISANLIGN 284
             L   IPPE+G   +++ LAL+                         N+L+G I   L GN
Sbjct:   258 LTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKL-GN 316

Query:   285 WTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGN 344
                +  L++ NN   G+IP  +G L  L  L+LY N+ +G IP E+G + S+  L L+ N
Sbjct:   317 IESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNN 376

Query:   345 QLSGTIPPXXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELPENISR 404
             +L+G+IP                    G IP E+G+M S++  D++ N+L G +P++   
Sbjct:   377 KLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGN 436

Query:   405 LVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNG 464
                L    +  N+ SG+IP      S  L  +    N+F+G  P  +C G  L+ ++++ 
Sbjct:   437 FTKLESLYLRVNHLSGAIPPGVAN-SSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDY 495

Query:   465 NNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWG 524
             N+  G +P  +R+C +L R RF GN+FTG+I  AFG++P L+FI  S N F GEIS +W 
Sbjct:   496 NHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWE 555

Query:   525 ECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGK 566
             +   L  L +  N I+G IP E+ N+T+L  L L +N L G+
Sbjct:   556 KSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGE 597

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 741 (265.9 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 178/566 (31%), Positives = 274/566 (48%)

Query:     1 LDLSHNNISGPIPPAIGXXXXXXXXXXXXXXXEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
             L L  N +SG IP  +G                G+IP   G+L  LQ L++ +  L G  
Sbjct:   125 LHLFSNLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLI 184

Query:    61 PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
             P +   L +++ L L  N LE P  ++  N  SL   +  +N L    P+ +   +NL  
Sbjct:   185 PSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQT 244

Query:   121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
             L+L  N  SG IP +L  +L  ++YLNL  NQ QG +   +++L+NL  L L++N  +G 
Sbjct:   245 LNLGDNSFSGEIPSQL-GDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGV 303

Query:   181 IPGDIGLMSNIQLVELFNNSFTGQIPSSL-GQLKNLQHLDLRMNALNSTIPPELGLCTNL 239
             I  +   M+ ++ + L  N  +G +P ++     +L+ L L    L+  IP E+  C +L
Sbjct:   304 IHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSL 363

Query:   240 SFLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISANLIGNWTELESLQIQNNSFM 299
               L L+                        +N L G +S++ I N T L+   + +N+  
Sbjct:   364 KLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSS-ISNLTNLQEFTLYHNNLE 422

Query:   300 GNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPXXXXXXX 359
             G +P EIG L KL+ ++LY N FSG +P EIG  T L+++D  GN+LSG IP        
Sbjct:   423 GKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKD 482

Query:   360 XXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFS 419
                         G IP  +G+   +   D+  NQL G +P +   L  L  F ++ N+  
Sbjct:   483 LTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQ 542

Query:   420 GSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCS 479
             G++P        +L  ++FS+N F+G +   LC   +     V  N F G +P  +   +
Sbjct:   543 GNLPDSLINLK-NLTRINFSSNKFNGSIS-PLCGSSSYLSFDVTENGFEGDIPLELGKST 600

Query:   480 NLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKI 539
             NL+R+R   NQFTG I R FG    L  + +S N   G I  + G C+ L+++ L+ N +
Sbjct:   601 NLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYL 660

Query:   540 SGGIPAELGNLTRLGVLSLDSNELTG 565
             SG IP  LG L  LG L L SN+  G
Sbjct:   661 SGVIPTWLGKLPLLGELKLSSNKFVG 686

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2161825 AT5G56040 [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 188/568 (33%), Positives = 271/568 (47%)

Query:     1 LDLSHNNISGPIPPA-IGXXXXXXXXXXXXXXXEGSIPSEMGDLSELQYLSVYNNSLNGA 59
             + L   +  GP+P   +                 GSIP E+GDLSEL+ L + +NSL+G 
Sbjct:    76 IQLQVMDFQGPLPATNLRQIKSLTLLSLTSVNLTGSIPKELGDLSELEVLDLADNSLSGE 135

Query:    60 FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119
              P  +  L+K++ L L  N LE    S+  N+ +L  L+L  N+L  E P  I   +NL 
Sbjct:   136 IPVDIFKLKKLKILSLNTNNLEGVIPSELGNLVNLIELTLFDNKLAGEIPRTIGELKNLE 195

Query:   120 YLDLSLNK-LSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFS 178
                   NK L G +P  +  N   L  L L +    G+L  ++  L  +  + L T+  S
Sbjct:   196 IFRAGGNKNLRGELPWEI-GNCESLVTLGLAETSLSGRLPASIGNLKKVQTIALYTSLLS 254

Query:   179 GPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTN 238
             GPIP +IG  + +Q + L+ NS +G IP S+G+LK LQ L L  N L   IP ELG C  
Sbjct:   255 GPIPDEIGNCTELQNLYLYQNSISGSIPVSMGRLKKLQSLLLWQNNLVGKIPTELGTCPE 314

Query:   239 LSFLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISANLIGNWTELESLQIQNNSF 298
             L  + L+                         N LSG I   L  N T+L  L+I NN  
Sbjct:   315 LFLVDLSENLLTGNIPRSFGNLPNLQELQLSVNQLSGTIPEEL-ANCTKLTHLEIDNNQI 373

Query:   299 MGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPXXXXXX 358
              G IPP IG LT L   F ++N  +G IP  + +   L+ +DLS N LSG+IP       
Sbjct:   374 SGEIPPLIGKLTSLTMFFAWQNQLTGIIPESLSQCQELQAIDLSYNNLSGSIPNGIFEIR 433

Query:   359 XXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNF 418
                          G IPP+IG+  +L    +N N+L G +P  I  L NLN   +  N  
Sbjct:   434 NLTKLLLLSNYLSGFIPPDIGNCTNLYRLRLNGNRLAGNIPAEIGNLKNLNFIDISENRL 493

Query:   419 SGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNC 478
              G+IP +    + SL  V   +N  +G LP  L    +L+ + ++ N+ TGSLP  + + 
Sbjct:   494 IGNIPPEISGCT-SLEFVDLHSNGLTGGLPGTLPK--SLQFIDLSDNSLTGSLPTGIGSL 550

Query:   479 SNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLS-NLQLDRN 537
             + L ++    N+F+G I R       L  + L  N F GEI  + G   +L+ +L L  N
Sbjct:   551 TELTKLNLAKNRFSGEIPREISSCRSLQLLNLGDNGFTGEIPNELGRIPSLAISLNLSCN 610

Query:   538 KISGGIPAELGNLTRLGVLSLDSNELTG 565
               +G IP+   +LT LG L +  N+L G
Sbjct:   611 HFTGEIPSRFSSLTNLGTLDVSHNKLAG 638

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 713 (256.0 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 180/537 (33%), Positives = 256/537 (47%)

Query:    34 GSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLE---TPDWSKFSN 90
             G++P  +GD   L+ L + +N L G  P+ LS LR +  L L  N L     PD SK S 
Sbjct:   119 GTLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIPPDISKCSK 178

Query:    91 MPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNK-LSGLIPERLFTNLGKLEYLNLT 149
             + SL    L  N LT   P+ +     L  + +  NK +SG IP  +  +   L  L L 
Sbjct:   179 LKSLI---LFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEI-GDCSNLTVLGLA 234

Query:   150 DNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSL 209
             +    G L  ++ KL  L  L + T   SG IP D+G  S +  + L+ NS +G IP  +
Sbjct:   235 ETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREI 294

Query:   210 GQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMXXXXXXXXXXXXXXXXXXXXXXX 269
             GQL  L+ L L  N+L   IP E+G C+NL  + L++                       
Sbjct:   295 GQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMIS 354

Query:   270 DNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSE 329
             DN  SG I    I N + L  LQ+  N   G IP E+G LTKL   F + N   G IP  
Sbjct:   355 DNKFSGSIPTT-ISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPG 413

Query:   330 IGKLTSLEKLDLSGNQLSGTIPPXXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDV 389
             +   T L+ LDLS N L+GTIP                    G IP EIG+ +SLV   +
Sbjct:   414 LADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRL 473

Query:   390 NTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPY 449
               N++ GE+P  I  L  +N     +N   G +P + G  S  L  +  SNNS  G LP 
Sbjct:   474 GFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCS-ELQMIDLSNNSLEGSLPN 532

Query:   450 ELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIR 509
              + S   L+ L V+ N F+G +PA +    +LN++    N F+G+I  + G+   L  + 
Sbjct:   533 PVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLD 592

Query:   510 LSGNHFIGEISPDWGECRNLS-NLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565
             L  N   GEI  + G+  NL   L L  N+++G IP+++ +L +L +L L  N L G
Sbjct:   593 LGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEG 649

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 1.6e-69, P = 1.6e-69
 Identities = 181/562 (32%), Positives = 267/562 (47%)

Query:     6 NNISGPIPPAIGXXXXXXXXXXXXXXXEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLS 65
             N+++G IP +IG                G IP + G+L  LQ L +  N L G  P ++ 
Sbjct:   202 NHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIG 261

Query:    66 NLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSL 125
             N   +  L+L  N L     ++  N+  L  L +  N+LT   PS +     LT+L LS 
Sbjct:   262 NCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSE 321

Query:   126 NKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDI 185
             N L G I E +   L  LE L L  N F G+   +++ L NLTVL +  N  SG +P D+
Sbjct:   322 NHLVGPISEEIGF-LESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADL 380

Query:   186 GLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALA 245
             GL++N++ +   +N  TG IPSS+     L+ LDL  N +   IP   G   NL+F+++ 
Sbjct:   381 GLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRM-NLTFISIG 439

Query:   246 MXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPE 305
                                     DN L+G +   LIG   +L  LQ+  NS  G IP E
Sbjct:   440 RNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKP-LIGKLQKLRILQVSYNSLTGPIPRE 498

Query:   306 IGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPXXXXXXXXXXXXX 365
             IG L  L  L+L+ N F+G IP E+  LT L+ L +  N L G IP              
Sbjct:   499 IGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDL 558

Query:   366 XXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGD 425
                   G IP     + SL    +  N+ +G +P ++  L  LN F +  N  +G+IPG+
Sbjct:   559 SNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGE 618

Query:   426 F-GKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRV 484
                      + ++FSNN  +G +P EL     ++E+ ++ N F+GS+P  ++ C N+  +
Sbjct:   619 LLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTL 678

Query:   485 RFDGNQFTGNIT-RAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGI 543
              F  N  +G+I    F     +  + LS N F GEI   +G   +L +L L  N ++G I
Sbjct:   679 DFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEI 738

Query:   544 PAELGNLTRLGVLSLDSNELTG 565
             P  L NL+ L  L L SN L G
Sbjct:   739 PESLANLSTLKHLKLASNNLKG 760

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 702 (252.2 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 180/568 (31%), Positives = 284/568 (50%)

Query:     3 LSHNNISGPIPPAIGXXXXXXXXXXXXXXXEGSIPSEMGDLSELQYLSVYNNSLNGAFPF 62
             L +N++SG +PPA+                 G IP  +G  S LQ+L + +N+ +G  P 
Sbjct:   123 LQYNSLSGKLPPAMRNLTSLEVFNVAGNRLSGEIP--VGLPSSLQFLDISSNTFSGQIPS 180

Query:    63 QLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLD 122
              L+NL +++ L+L  N L     +   N+ SL +L L +N L    PS I  C +L +L 
Sbjct:   181 GLANLTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLS 240

Query:   123 LSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIP 182
              S N++ G+IP   +  L KLE L+L++N F G +  ++   ++LT+++L  N FS  + 
Sbjct:   241 ASENEIGGVIPAA-YGALPKLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVR 299

Query:   183 GDI--GLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
              +      + +Q+++L  N  +G+ P  L  + +L++LD+  N  +  IPP++G    L 
Sbjct:   300 PETTANCRTGLQVLDLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGNLKRLE 359

Query:   241 FLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISANLIGNWTELESLQIQNNSFMG 300
              L LA                         N L G+I    +G    L+ L +  NSF G
Sbjct:   360 ELKLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIP-EFLGYMKALKVLSLGRNSFSG 418

Query:   301 NIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPXXXXXXXX 360
              +P  +  L +L+ L L  N+ +G  P E+  LTSL +LDLSGN+ SG +P         
Sbjct:   419 YVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNL 478

Query:   361 XXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSG 420
                        G IP  +G++  L A D++   + GE+P  +S L N+   ++  NNFSG
Sbjct:   479 SFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSG 538

Query:   421 SIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFA--LEELTVNGNNFTGSLPACMRNC 478
              +P  F     SL  V+ S+NSFSGE+P     GF   L  L+++ N+ +GS+P  + NC
Sbjct:   539 VVPEGFSSLV-SLRYVNLSSNSFSGEIPQTF--GFLRLLVSLSLSDNHISGSIPPEIGNC 595

Query:   479 SNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNK 538
             S L  +    N+  G+I       PRL  + L  N+  GEI P+  +  +L++L LD N 
Sbjct:   596 SALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNH 655

Query:   539 ISGGIPAELGNLTRLGVLSLDSNELTGK 566
             +SG IP     L+ L  + L  N LTG+
Sbjct:   656 LSGVIPGSFSGLSNLTKMDLSVNNLTGE 683

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 182/570 (31%), Positives = 268/570 (47%)

Query:     1 LDLSHNNISGPIPPAIGXXXXXXXXXXXXXXXEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
             LDLS  N+SG + P+IG                G IP E+G+ S+L+ + + NN   G+ 
Sbjct:    90 LDLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSI 149

Query:    61 PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
             P +++ L ++R  ++  N L  P   +  ++ +L  L    N LT   P  +     LT 
Sbjct:   150 PVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTT 209

Query:   121 LDLSLNKLSGLIPERLFTNLGK---LEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKF 177
                  N  SG IP    T +GK   L+ L L  N   G+L   +  L  L  + L  NKF
Sbjct:   210 FRAGQNDFSGNIP----TEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKF 265

Query:   178 SGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCT 237
             SG IP DIG +++++ + L+ NS  G IPS +G +K+L+ L L  N LN TIP ELG  +
Sbjct:   266 SGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLS 325

Query:   238 NLSFLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISANLIGNWTELESLQIQNNS 297
              +  +  +                         N L+G I  N +     L  L +  NS
Sbjct:   326 KVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTG-IIPNELSKLRNLAKLDLSINS 384

Query:   298 FMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPXXXXX 357
               G IPP    LT ++ L L+ N  SG IP  +G  + L  +D S NQLSG IPP     
Sbjct:   385 LTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQ 444

Query:   358 XXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNN 417
                           G IPP +    SL+   V  N+L G+ P  + +LVNL+   +  N 
Sbjct:   445 SNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNR 504

Query:   418 FSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRN 477
             FSG +P + G     L  +  + N FS  LP E+     L    V+ N+ TG +P+ + N
Sbjct:   505 FSGPLPPEIGTCQ-KLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIAN 563

Query:   478 CSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRN 537
             C  L R+    N F G++    G   +L+ +RLS N F G I    G   +L+ LQ+  N
Sbjct:   564 CKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGN 623

Query:   538 KISGGIPAELGNLTRLGV-LSLDSNELTGK 566
               SG IP +LG L+ L + ++L  N+ +G+
Sbjct:   624 LFSGSIPPQLGLLSSLQIAMNLSYNDFSGE 653

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.0e-67, P = 2.0e-67
 Identities = 180/566 (31%), Positives = 266/566 (46%)

Query:     1 LDLSHNNISGPIPPAIGXXXXXXXXXXXXXXXEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
             L L+   ++GPIP  +G               EG IP+E+G+ S+L   +   N LNG  
Sbjct:   172 LALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTI 231

Query:    61 PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
             P +L  L  +  L+L  N L     S+   M  L +LSL  N+L    P  +    NL  
Sbjct:   232 PAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQT 291

Query:   121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSG 179
             LDLS N L+G IPE  F N+ +L  L L +N   G L  ++ S  +NL  L L+  + SG
Sbjct:   292 LDLSANNLTGEIPEE-FWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSG 350

Query:   180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNL 239
              IP ++    +++ ++L NNS  G IP +L +L  L  L L  N L  T+ P +   TNL
Sbjct:   351 EIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNL 410

Query:   240 SFLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISANLIGNWTELESLQIQNNSFM 299
              +L L                         +N  SGEI    IGN T L+ + +  N F 
Sbjct:   411 QWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQE-IGNCTSLKMIDMFGNHFE 469

Query:   300 GNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPXXXXXXX 359
             G IPP IG L +L  L L +N   G +P+ +G    L  LDL+ NQLSG+IP        
Sbjct:   470 GEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKG 529

Query:   360 XXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFS 419
                         G +P  + S+ +L   +++ N+L+G +         L+ F V  N F 
Sbjct:   530 LEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLS-FDVTNNGFE 588

Query:   420 GSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCS 479
               IP + G  S +L  +    N  +G++P+ L     L  L ++ N  TG++P  +  C 
Sbjct:   589 DEIPLELGN-SQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCK 647

Query:   480 NLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKI 539
              L  +  + N  +G I    G   +L  ++LS N F+  +  +   C  L  L LD N +
Sbjct:   648 KLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSL 707

Query:   540 SGGIPAELGNLTRLGVLSLDSNELTG 565
             +G IP E+GNL  L VL+LD N+ +G
Sbjct:   708 NGSIPQEIGNLGALNVLNLDKNQFSG 733

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 155/429 (36%), Positives = 224/429 (52%)

Query:   139 NLGKLEYLNLTDNQFQGKLSP-NVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELF 197
             +LG +  LNLT+   +G       S L NLT + L+ N+FSG I    G  S ++  +L 
Sbjct:    91 SLGSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLS 150

Query:   198 NNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMXXXXXXXXXXX 257
              N   G+IP  LG L NL  L L  N LN +IP E+G  T ++ +A+             
Sbjct:   151 INQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSF 210

Query:   258 XXXXXXXXXXXXDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFL 317
                          N LSG I +  IGN   L  L +  N+  G IP   G L  +  L +
Sbjct:   211 GNLTKLVNLYLFINSLSGSIPSE-IGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNM 269

Query:   318 YRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPXXXXXXXXXXXXXXXXXXXGTIPPE 377
             + N  SG IP EIG +T+L+ L L  N+L+G IP                    G+IPPE
Sbjct:   270 FENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPE 329

Query:   378 IGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVS 437
             +G M S++  +++ N+L G +P++  +L  L    +  N  SG IP      S  L  + 
Sbjct:   330 LGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIAN-STELTVLQ 388

Query:   438 FSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITR 497
                N+F+G LP  +C G  LE LT++ N+F G +P  +R+C +L RVRF GN F+G+I+ 
Sbjct:   389 LDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISE 448

Query:   498 AFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLS 557
             AFGV+P L+FI LS N+F G++S +W + + L    L  N I+G IP E+ N+T+L  L 
Sbjct:   449 AFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLD 508

Query:   558 LDSNELTGK 566
             L SN +TG+
Sbjct:   509 LSSNRITGE 517

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2007918 PEPR2 "PEP1 receptor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 671 (241.3 bits), Expect = 3.1e-65, P = 3.1e-65
 Identities = 171/472 (36%), Positives = 232/472 (49%)

Query:    97 LSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGK 156
             L+L  + L+ +  S I   ++L  LDLSLN  SGL+P  L  N   LEYL+L++N F G+
Sbjct:    81 LNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTL-GNCTSLEYLDLSNNDFSGE 139

Query:   157 LSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVEL---FNNSFTGQIPSSLGQLK 213
             +      L NLT L L  N  SG IP  +G +  I+LV+L   +NN  +G IP  LG   
Sbjct:   140 VPDIFGSLQNLTFLYLDRNNLSGLIPASVGGL--IELVDLRMSYNN-LSGTIPELLGNCS 196

Query:   214 NLQHLDLRMNALNSTIPPELGLCTNLSFLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFL 273
              L++L L  N LN ++P  L L  NL  L ++                         N  
Sbjct:   197 KLEYLALNNNKLNGSLPASLYLLENLGELFVSNNSLGGRLHFGSSNCKKLVSLDLSFNDF 256

Query:   274 SGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKL 333
              G +    IGN + L SL +   +  G IP  +G+L K+  + L  N  SG IP E+G  
Sbjct:   257 QGGVPPE-IGNCSSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQELGNC 315

Query:   334 TSLEKLDLSGNQLSGTIPPXXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQ 393
             +SLE L L+ NQL G IPP                   G IP  I  + SL    V  N 
Sbjct:   316 SSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGEIPIGIWKIQSLTQMLVYNNT 375

Query:   394 LHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCS 453
             L GELP  +++L +L K ++F N F G IP   G  + SL  V    N F+GE+P  LC 
Sbjct:   376 LTGELPVEVTQLKHLKKLTLFNNGFYGDIPMSLG-LNRSLEEVDLLGNRFTGEIPPHLCH 434

Query:   454 GFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGN 513
             G  L    +  N   G +PA +R C  L RVR + N+ +G +   F     L ++ L  N
Sbjct:   435 GQKLRLFILGSNQLHGKIPASIRQCKTLERVRLEDNKLSG-VLPEFPESLSLSYVNLGSN 493

Query:   514 HFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565
              F G I    G C+NL  + L +NK++G IP ELGNL  LG+L+L  N L G
Sbjct:   494 SFEGSIPRSLGSCKNLLTIDLSQNKLTGLIPPELGNLQSLGLLNLSHNYLEG 545

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042277 "peptide binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	569
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-82
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-79
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-74
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-71
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  277 bits (710), Expect = 1e-82
 Identities = 195/566 (34%), Positives = 283/566 (50%), Gaps = 55/566 (9%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLS-ELQYLSVYNNSLNGA 59
           +DLS  NISG I  AI  L  +  ++L+NN   G IP ++   S  L+YL++ NN+  G+
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133

Query: 60  FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119
            P               G            ++P+L  L L  N L+ E P+ I +  +L 
Sbjct: 134 IP--------------RG------------SIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167

Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSG 179
            LDL  N L G IP                          +++ L++L  L LA+N+  G
Sbjct: 168 VLDLGGNVLVGKIP-------------------------NSLTNLTSLEFLTLASNQLVG 202

Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNL 239
            IP ++G M +++ + L  N+ +G+IP  +G L +L HLDL  N L   IP  LG   NL
Sbjct: 203 QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262

Query: 240 SFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFM 299
            +L L  N+LSG +P S+ +L +L  L LSDN LSGEI   L+     LE L + +N+F 
Sbjct: 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI-PELVIQLQNLEILHLFSNNFT 321

Query: 300 GNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTN 359
           G IP  +  L +LQ L L+ N FSG IP  +GK  +L  LDLS N L+G IP  L +  N
Sbjct: 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381

Query: 360 LLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFS 419
           L  L LF N+L G IP  +G+  SL    +  N   GELP   ++L  +    +  NN  
Sbjct: 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441

Query: 420 GSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCS 479
           G I        PSL  +S + N F G LP +      LE L ++ N F+G++P  + + S
Sbjct: 442 GRINSRKWDM-PSLQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLS 499

Query: 480 NLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKI 539
            L +++   N+ +G I        +L  + LS N   G+I   + E   LS L L +N++
Sbjct: 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559

Query: 540 SGGIPAELGNLTRLGVLSLDSNELTG 565
           SG IP  LGN+  L  +++  N L G
Sbjct: 560 SGEIPKNLGNVESLVQVNISHNHLHG 585

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  269 bits (688), Expect = 2e-79
 Identities = 187/506 (36%), Positives = 260/506 (51%), Gaps = 37/506 (7%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L+LS+NN +G IP   G++ NL  LDL+NN+  G IP+++G  S L+ L +  N L G  
Sbjct: 123 LNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           P  L+NL  + +L L  N L      +   M SL  + L YN L+ E P  I    +L +
Sbjct: 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           LDL  N L+G IP  L  NL  L+YL L  N+  G + P++  L  L  L L+ N  SG 
Sbjct: 241 LDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
           IP  +  + N++++ LF+N+FTG+IP +L  L  LQ L L  N  +  IP  LG   NL+
Sbjct: 300 IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT 359

Query: 241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 300
            L L+ N L+G +P  L +   L +L L  N L GEI  +L G    L  +++Q+NSF G
Sbjct: 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL-GACRSLRRVRLQDNSFSG 418

Query: 301 NIPPEIGLL------------------------TKLQYLFLYRNHFSGPIPSEIGKLTSL 336
            +P E   L                          LQ L L RN F G +P   G    L
Sbjct: 419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRL 477

Query: 337 EKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHG 396
           E LDLS NQ SG +P  L +L+ L+ L+L  N LSG IP E+ S   LV+ D++ NQL G
Sbjct: 478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG 537

Query: 397 ELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFA 456
           ++P + S +  L++  +  N  SG IP + G    SL+ V+ S+N   G LP    +  A
Sbjct: 538 QIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE-SLVQVNISHNHLHGSLPST-GAFLA 595

Query: 457 LEELTVNGNNF------TGSLPACMR 476
           +    V GN        T  LP C R
Sbjct: 596 INASAVAGNIDLCGGDTTSGLPPCKR 621

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  253 bits (648), Expect = 6e-74
 Identities = 166/457 (36%), Positives = 234/457 (51%), Gaps = 34/457 (7%)

Query: 113 LTCRN---LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLS-NLT 168
           +TC N   +  +DLS   +SG I   +F  L  ++ +NL++NQ  G +  ++   S +L 
Sbjct: 63  ITCNNSSRVVSIDLSGKNISGKISSAIF-RLPYIQTINLSNNQLSGPIPDDIFTTSSSLR 121

Query: 169 VLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNST 228
            L L+ N F+G IP   G + N++ ++L NN  +G+IP+ +G   +L+ LDL  N L   
Sbjct: 122 YLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179

Query: 229 IPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTEL 288
           IP  L   T+L FL LA NQL G +P  L  +  L  + L  N LSGEI    IG  T L
Sbjct: 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP-YEIGGLTSL 238

Query: 289 ESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSG 348
             L +  N+  G IP  +G L  LQYLFLY+N  SGPIP  I  L  L  LDLS N LSG
Sbjct: 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298

Query: 349 TIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNL 408
            IP  +  L NL  L LF NN +G IP                          ++ L  L
Sbjct: 299 EIPELVIQLQNLEILHLFSNNFTGKIP------------------------VALTSLPRL 334

Query: 409 NKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFT 468
               +++N FSG IP + GK + +L  +  S N+ +GE+P  LCS   L +L +  N+  
Sbjct: 335 QVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393

Query: 469 GSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRN 528
           G +P  +  C +L RVR   N F+G +   F   P + F+ +S N+  G I+    +  +
Sbjct: 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453

Query: 529 LSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565
           L  L L RNK  GG+P   G+  RL  L L  N+ +G
Sbjct: 454 LQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSG 489

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  247 bits (631), Expect = 1e-71
 Identities = 163/476 (34%), Positives = 241/476 (50%), Gaps = 76/476 (15%)

Query: 138 TNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDI-GLMSNIQLVEL 196
            N  ++  ++L+     GK+S  + +L  +  + L+ N+ SGPIP DI    S+++ + L
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 197 FNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLS 256
            NN+FTG IP   G + NL+ LDL  N L+  IP ++G  ++L  L L  N L G +P S
Sbjct: 126 SNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 257 LSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLF 316
           L+NL+ L                         E L + +N  +G IP E+G +  L++++
Sbjct: 184 LTNLTSL-------------------------EFLTLASNQLVGQIPRELGQMKSLKWIY 218

Query: 317 LYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPP 376
           L  N+ SG IP EIG LTSL  LDL  N L+G IP +L NL NL  L L+ N LSG IPP
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278

Query: 377 EIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNF------------------ 418
            I S+  L++ D++ N L GE+PE + +L NL    +F+NNF                  
Sbjct: 279 SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338

Query: 419 ------SGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLP 472
                 SG IP + GK + +L  +  S N+ +GE+P  LCS   L +L +  N+  G +P
Sbjct: 339 LWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397

Query: 473 ACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEIS------------ 520
             +  C +L RVR   N F+G +   F   P + F+ +S N+  G I+            
Sbjct: 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML 457

Query: 521 -----------PDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565
                      PD    + L NL L RN+ SG +P +LG+L+ L  L L  N+L+G
Sbjct: 458 SLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.7 bits (181), Expect = 9e-14
 Identities = 38/95 (40%), Positives = 62/95 (65%), Gaps = 2/95 (2%)

Query: 324 GPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMAS 383
           G IP++I KL  L+ ++LSGN + G IPP+L ++T+L  L L +N+ +G+IP  +G + S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 384 LVAFDVNTNQLHGELPENI-SRLVNLNKFSVFTNN 417
           L   ++N N L G +P  +  RL++   F+ FT+N
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFN-FTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.7 bits (181), Expect = 9e-14
 Identities = 41/89 (46%), Positives = 54/89 (60%), Gaps = 1/89 (1%)

Query: 266 LGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGP 325
           LGL +  L G I  N I     L+S+ +  NS  GNIPP +G +T L+ L L  N F+G 
Sbjct: 423 LGLDNQGLRGFI-PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 326 IPSEIGKLTSLEKLDLSGNQLSGTIPPTL 354
           IP  +G+LTSL  L+L+GN LSG +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.3 bits (180), Expect = 1e-13
 Identities = 40/113 (35%), Positives = 60/113 (53%)

Query: 191 IQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLS 250
           I  + L N    G IP+ + +L++LQ ++L  N++   IPP LG  T+L  L L+ N  +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 251 GGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIP 303
           G +P SL  L+ L  L L+ N LSG + A L G      S    +N+ +  IP
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.8 bits (176), Expect = 4e-13
 Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 1/100 (1%)

Query: 280 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKL 339
           +  G W  ++ L + N    G IP +I  L  LQ + L  N   G IP  +G +TSLE L
Sbjct: 413 STKGKWF-IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL 471

Query: 340 DLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIG 379
           DLS N  +G+IP +L  LT+L  L L  N+LSG +P  +G
Sbjct: 472 DLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 33/89 (37%), Positives = 56/89 (62%)

Query: 146 LNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQI 205
           L L +   +G +  ++SKL +L  + L+ N   G IP  +G ++++++++L  NSF G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 206 PSSLGQLKNLQHLDLRMNALNSTIPPELG 234
           P SLGQL +L+ L+L  N+L+  +P  LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 35/79 (44%), Positives = 47/79 (59%)

Query: 179 GPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTN 238
           G IP DI  + ++Q + L  NS  G IP SLG + +L+ LDL  N+ N +IP  LG  T+
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 239 LSFLALAMNQLSGGLPLSL 257
           L  L L  N LSG +P +L
Sbjct: 492 LRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.6 bits (160), Expect = 4e-11
 Identities = 28/61 (45%), Positives = 44/61 (72%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           ++LS N+I G IPP++G++++L  LDL+ N F GSIP  +G L+ L+ L++  NSL+G  
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Query: 61  P 61
           P
Sbjct: 507 P 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.5 bits (157), Expect = 9e-11
 Identities = 31/89 (34%), Positives = 50/89 (56%)

Query: 339 LDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL 398
           L L    L G IP  +  L +L S+ L  N++ G IPP +GS+ SL   D++ N  +G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 399 PENISRLVNLNKFSVFTNNFSGSIPGDFG 427
           PE++ +L +L   ++  N+ SG +P   G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.7 bits (155), Expect = 2e-10
 Identities = 30/90 (33%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           L L    L G IP  + + L  L+ +NL+ N  +G + P++  +++L VL L+ N F+G 
Sbjct: 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLG 210
           IP  +G +++++++ L  NS +G++P++LG
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 58.4 bits (141), Expect = 3e-09
 Identities = 102/311 (32%), Positives = 154/311 (49%), Gaps = 17/311 (5%)

Query: 102 NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV 161
           +   L  PS +    +L  L  S              NL  L  L+L  N+ +  +S  +
Sbjct: 56  SNTLLLLPSSLSRLLSLDLLSPSGISSLDGS--ENLLNLLPLPSLDLNLNRLRSNISE-L 112

Query: 162 SKLSNLTVLRLATNKFSGPIPGDIGLM-SNIQLVELFNNSFTGQIPSSLGQLKNLQHLDL 220
            +L+NLT L L  N  +  IP  IGL+ SN++ ++L +N     +PS L  L NL++LDL
Sbjct: 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL 170

Query: 221 RMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISAN 280
             N L+  +P  L   +NL+ L L+ N++S  LP  +  LS L EL LS+N +   +S+ 
Sbjct: 171 SFNDLSD-LPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSIIELLSS- 227

Query: 281 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLD 340
            + N   L  L++ NN    ++P  IG L+ L+ L L  N  S    S +G LT+L +LD
Sbjct: 228 -LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELD 283

Query: 341 LSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPE 400
           LSGN LS  +P        LL L+L  N L      E+   + L+  ++ +N      PE
Sbjct: 284 LSGNSLSNALPL---IALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGET-SSPE 339

Query: 401 NISRLVNLNKF 411
            +S L +LN  
Sbjct: 340 ALSILESLNNL 350

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 2e-08
 Identities = 29/80 (36%), Positives = 44/80 (55%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L L +  + G IP  I  L +L  ++L+ N   G+IP  +G ++ L+ L +  NS NG+ 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 61  PFQLSNLRKVRYLDLGGNFL 80
           P  L  L  +R L+L GN L
Sbjct: 483 PESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 386 AFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG 445
              ++   L G +P +IS+L +L   ++  N+  G+IP   G  + SL  +  S NSF+G
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT-SLEVLDLSYNSFNG 480

Query: 446 ELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGN 494
            +P  L    +L  L +NGN+ +G +PA +     L+R  F+   FT N
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVPAAL-GGRLLHRASFN---FTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 4e-07
 Identities = 32/103 (31%), Positives = 46/103 (44%)

Query: 49  LSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEF 108
           L + N  L G  P  +S LR ++ ++L GN +         ++ SL  L L YN      
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 109 PSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDN 151
           P  +    +L  L+L+ N LSG +P  L   L      N TDN
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 27/62 (43%), Positives = 34/62 (54%)

Query: 505 LDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT 564
           L  I LSGN   G I P  G   +L  L L  N  +G IP  LG LT L +L+L+ N L+
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 565 GK 566
           G+
Sbjct: 504 GR 505

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 55/160 (34%), Positives = 77/160 (48%), Gaps = 6/160 (3%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           LDLS N++S  +P  +  LSNL  LDL+ N     +P E+  LS L+ L + NNS+    
Sbjct: 168 LDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-EL 224

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
              LSNL+ +  L+L  N LE        N+ +L  L L  N+++    S + +  NL  
Sbjct: 225 LSSLSNLKNLSGLELSNNKLEDLP-ESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRE 281

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPN 160
           LDLS N LS  +P      L     LNL       +L  N
Sbjct: 282 LDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLN 321

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 83/249 (33%), Positives = 125/249 (50%), Gaps = 10/249 (4%)

Query: 12  IPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVR 71
               +  L  L  LDLN N    +I SE+ +L+ L  L + NN++    P        ++
Sbjct: 85  GSENLLNLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLK 143

Query: 72  YLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGL 131
            LDL  N +E+       N+P+L +L L +N+L+ + P  +    NL  LDLS NK+S L
Sbjct: 144 ELDLSDNKIESLPSPL-RNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDL 201

Query: 132 IPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNI 191
            PE    +   LE L+L++N    +L  ++S L NL+ L L+ NK        IG +SN+
Sbjct: 202 PPEIELLS--ALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPES-IGNLSNL 257

Query: 192 QLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSG 251
           + ++L NN       SSLG L NL+ LDL  N+L S   P + L   L  L L +     
Sbjct: 258 ETLDLSNN--QISSISSLGSLTNLRELDLSGNSL-SNALPLIALLLLLLELLLNLLLTLK 314

Query: 252 GLPLSLSNL 260
            L L L+++
Sbjct: 315 ALELKLNSI 323

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 93  SLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQ 152
           +L  L L  N LT+          NL  LDLS N L+  I    F+ L  L  L+L+ N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGNN 59

Query: 153 F 153
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 420 GSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCS 479
           G IP D  K    L +++ S NS  G +P  L S  +LE L ++ N+F GS+P  +   +
Sbjct: 432 GFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 480 NLNRVRFDGNQFTGNITRAFGVHP 503
           +L  +  +GN  +G +  A G   
Sbjct: 491 SLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 13/252 (5%)

Query: 223 NALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLI 282
           +     +P  L    +L  L+ +    S     +L NL  L  L L+ N L   IS   +
Sbjct: 56  SNTLLLLPSSLSRLLSLDLLSPSGIS-SLDGSENLLNLLPLPSLDLNLNRLRSNISE--L 112

Query: 283 GNWTELESLQIQNNSFMGNIPPEIGLLT-KLQYLFLYRNHFSGPIPSEIGKLTSLEKLDL 341
              T L SL + NN+   +IPP IGLL   L+ L L  N     +PS +  L +L+ LDL
Sbjct: 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL 170

Query: 342 SGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPEN 401
           S N LS  +P  L NL+NL +L L  N +S  +PPEI  +++L   D++ N +  EL  +
Sbjct: 171 SFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSS 227

Query: 402 ISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELT 461
           +S L NL+   +  N             +   +++S +  S    L         L EL 
Sbjct: 228 LSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLT----NLRELD 283

Query: 462 VNGNNFTGSLPA 473
           ++GN+ + +LP 
Sbjct: 284 LSGNSLSNALPL 295

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 7e-05
 Identities = 20/49 (40%), Positives = 26/49 (53%)

Query: 517 GEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565
           G I  D  + R+L ++ L  N I G IP  LG++T L VL L  N   G
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 18/41 (43%), Positives = 29/41 (70%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMG 41
           LDLS+N+ +G IP ++G L++L  L+LN N   G +P+ +G
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 28/89 (31%), Positives = 42/89 (47%)

Query: 460 LTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEI 519
           L ++     G +P  +    +L  +   GN   GNI  + G    L+ + LS N F G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 520 SPDWGECRNLSNLQLDRNKISGGIPAELG 548
               G+  +L  L L+ N +SG +PA LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 42/170 (24%), Positives = 63/170 (37%), Gaps = 37/170 (21%)

Query: 1   LDLSHNNISGP----IPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSL 56
           L+L++N I       +   +    NL  LDLNNN            L+E           
Sbjct: 170 LNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT---DEGASALAET---------- 216

Query: 57  NGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSN-----MPSLTHLSLCYNELTLE-FPS 110
                  L++L+ +  L+LG N L     +  ++       SL  LSL  N++T +    
Sbjct: 217 -------LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKD 269

Query: 111 FILTCRN---LTYLDLSLNKLS----GLIPERLFTNLGKLEYLNLTDNQF 153
                     L  LDL  NK       L+ E L     +LE L + D+ F
Sbjct: 270 LAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 5e-04
 Identities = 52/175 (29%), Positives = 71/175 (40%), Gaps = 10/175 (5%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           LDLS N IS  +PP I  LS L  LDL+NN     + S + +L  L  L + NN L    
Sbjct: 191 LDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL 247

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           P  + NL  +  LDL  N +     S   ++ +L  L L  N L+       L    L  
Sbjct: 248 PESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSN-----ALPLIALLL 300

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATN 175
           L L L     L  + L   L  +   N   +  +      +S L +L  L    N
Sbjct: 301 LLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDN 355

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 7e-04
 Identities = 21/60 (35%), Positives = 26/60 (43%)

Query: 69  KVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKL 128
            ++ LDL  N L       F  +P+L  L L  N LT   P       +L  LDLS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 21/59 (35%), Positives = 27/59 (45%)

Query: 46  LQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNEL 104
           L+ L + NN L          L  ++ LDL GN L +     FS +PSL  L L  N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 21 NLTFLDLNNNLFEGSIPSEM-GDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGN 78
          NL  LDL+NN     IP      L  L+ L +  N+L    P   S L  +R LDL GN
Sbjct: 1  NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 50/211 (23%), Positives = 69/211 (32%), Gaps = 41/211 (19%)

Query: 92  PSLTHLSLCYNEL------TLEFPSFILTCRNLTYLDLSLNKLSGLIPERL--FTNLGKL 143
           PSL  L L  NE              +     L  LDLS N L       L        L
Sbjct: 51  PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSL 110

Query: 144 EYLNLTDNQFQGKLSPNVSK-----LSNLTVLRLATNKFSG----PIPGDIGLMSNIQLV 194
           + L L +N    +    ++K        L  L L  N+  G     +   +    +++ +
Sbjct: 111 QELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL 170

Query: 195 ELFNNSFTGQIPSSLGQ----LKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLS 250
            L NN        +L +      NL+ LDL  N L              S LA       
Sbjct: 171 NLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT---------DEGASALA------- 214

Query: 251 GGLPLSLSNLSRLNELGLSDNFLSGEISANL 281
                SL +L  LN   L DN L+   +A L
Sbjct: 215 -ETLASLKSLEVLN---LGDNNLTDAGAAAL 241

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	569
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.3
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.28
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.25
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.25
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.17
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.13
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.09
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.07
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.07
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.03
PLN03150	623	hypothetical protein; Provisional	99.02
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.0
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.96
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.95
PLN03150	623	hypothetical protein; Provisional	98.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.91
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.79
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.64
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.46
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.45
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.37
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.36
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.32
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.31
KOG4341	483	consensus F-box protein containing LRR [General fu	98.26
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.25
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.23
KOG4341	483	consensus F-box protein containing LRR [General fu	98.13
PRK15386	426	type III secretion protein GogB; Provisional	98.12
PRK15386	426	type III secretion protein GogB; Provisional	98.07
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.04
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.95
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.88
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.88
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.86
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.81
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.79
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.68
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.65
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.64
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.47
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.37
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.34
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.06
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.89
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.87
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.09
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.03
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.78
KOG4308	478	consensus LRR-containing protein [Function unknown	94.29
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.6
KOG4308	478	consensus LRR-containing protein [Function unknown	92.35
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.9
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.4
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.15
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.29
smart00370	26	LRR Leucine-rich repeats, outliers.	87.29
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.92
smart00370	26	LRR Leucine-rich repeats, outliers.	86.92
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.2

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.5e-56  Score=491.56  Aligned_cols=536  Identities=33%  Similarity=0.509  Sum_probs=372.7

Q ss_pred             CCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhc-cCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEE
Q 047977           20 SNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQL-SNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLS   98 (569)
Q Consensus        20 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~   98 (569)
                      .+++.|+++++.+.+..+.++..+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+....+.  ..+++|++|+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~  146 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD  146 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence            467777777777776677777777777777777777765555543 3777777777777766543322  3467777777


Q ss_pred             cccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccc
Q 047977           99 LCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFS  178 (569)
Q Consensus        99 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  178 (569)
                      +++|.+.+..|..++.+++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  225 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS  225 (968)
T ss_pred             CcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence            77777766677777777777777777777766666543 67777777777777776666777777777777777777776


Q ss_pred             cCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCc
Q 047977          179 GPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLS  258 (569)
Q Consensus       179 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~  258 (569)
                      ...+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.+++++|.+....+..+.
T Consensus       226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  305 (968)
T PLN00113        226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI  305 (968)
T ss_pred             CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence            66666677777777777777777666777777777777777777777666666666777777777777777666666666


Q ss_pred             CCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCE
Q 047977          259 NLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEK  338 (569)
Q Consensus       259 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  338 (569)
                      .+++|+.|++++|.+.+..+.. +..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|..+..+++|+.
T Consensus       306 ~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~  384 (968)
T PLN00113        306 QLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK  384 (968)
T ss_pred             CCCCCcEEECCCCccCCcCChh-HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCE
Confidence            7777777777777666444433 566677777777777776666666666777777777777776666666666677777


Q ss_pred             EEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcc
Q 047977          339 LDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNF  418 (569)
Q Consensus       339 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~  418 (569)
                      |++++|.+....+..+..+++|+.|++++|.+++..+..+..++.|+.+++++|.+.+..+..+..+++|+.+++++|.+
T Consensus       385 L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~  464 (968)
T PLN00113        385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF  464 (968)
T ss_pred             EECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCcee
Confidence            77777777666666677777777777777777666666667777777777777777766666666677777777777777


Q ss_pred             cccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhh
Q 047977          419 SGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRA  498 (569)
Q Consensus       419 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  498 (569)
                      .+..|..+..  ++|+.|++++|++.+..|..+..+++|+.|++++|.+.+..|..+.++++|++|++++|.+++.+|..
T Consensus       465 ~~~~p~~~~~--~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  542 (968)
T PLN00113        465 FGGLPDSFGS--KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS  542 (968)
T ss_pred             eeecCccccc--ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence            6666554432  36777777777776666666666777777777777776666766777777777777777777777777


Q ss_pred             hcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCc
Q 047977          499 FGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNE  562 (569)
Q Consensus       499 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  562 (569)
                      ++.+++|++|++++|++.+.+|..+..+++|+.|++++|++.+.+|.. +....+....+.+|+
T Consensus       543 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~  605 (968)
T PLN00113        543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI  605 (968)
T ss_pred             HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence            777777777777777777667777777777777777777777666643 223334444445554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.8e-56  Score=492.81  Aligned_cols=520  Identities=35%  Similarity=0.545  Sum_probs=480.9

Q ss_pred             CCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCC-CCccCCCCCCCcEEEcccccccccCCccccCCCCCCEE
Q 047977           43 LSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETP-DWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYL  121 (569)
Q Consensus        43 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  121 (569)
                      ..+++.|+++++.+.+..+..+..+++|++|++++|.+... +...+..+.+|++|++++|.+.+..|.  +.+++|++|
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L  145 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL  145 (968)
T ss_pred             CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence            45799999999999888888999999999999999998744 444456899999999999999866664  468999999


Q ss_pred             EcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcc
Q 047977          122 DLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSF  201 (569)
Q Consensus       122 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  201 (569)
                      ++++|.+.+.+|..+ .++++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus       146 ~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  224 (968)
T PLN00113        146 DLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL  224 (968)
T ss_pred             ECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence            999999987777664 8999999999999999888888999999999999999999888888999999999999999999


Q ss_pred             eecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccc
Q 047977          202 TGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANL  281 (569)
Q Consensus       202 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  281 (569)
                      .+..|..+..+++|++|++++|.+....+..++.+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+.++.. 
T Consensus       225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-  303 (968)
T PLN00113        225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL-  303 (968)
T ss_pred             CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh-
Confidence            9889999999999999999999998888889999999999999999998888888999999999999999988666654 


Q ss_pred             cCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCC
Q 047977          282 IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLL  361 (569)
Q Consensus       282 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  361 (569)
                      +..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+
T Consensus       304 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~  383 (968)
T PLN00113        304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF  383 (968)
T ss_pred             HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCC
Confidence            77899999999999999888888899999999999999999988999999999999999999999888888999999999


Q ss_pred             EEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccC
Q 047977          362 SLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNN  441 (569)
Q Consensus       362 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  441 (569)
                      .+++++|.+.+..+..+..+++|+.+++++|.+.+..|..+..++.|+.+++++|.+++.++..+..++ +|+.|++++|
T Consensus       384 ~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n  462 (968)
T PLN00113        384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP-SLQMLSLARN  462 (968)
T ss_pred             EEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC-CCcEEECcCc
Confidence            999999999988888999999999999999999988999999999999999999999998888777776 9999999999


Q ss_pred             cCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCc
Q 047977          442 SFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISP  521 (569)
Q Consensus       442 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  521 (569)
                      .+.+.+|..+ ..++|+.|++++|++.+..|..+.++++|++|++++|.+.+.+|..++.+++|++|++++|.+++.+|.
T Consensus       463 ~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  541 (968)
T PLN00113        463 KFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA  541 (968)
T ss_pred             eeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh
Confidence            9987777644 458999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccCC
Q 047977          522 DWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKNS  568 (569)
Q Consensus       522 ~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  568 (569)
                      .|+.+++|+.|++++|++++..|..+..+++|++|++++|++.|.+|
T Consensus       542 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        542 SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             hHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            99999999999999999999999999999999999999999999988

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=9.7e-38  Score=292.31  Aligned_cols=363  Identities=26%  Similarity=0.282  Sum_probs=278.1

Q ss_pred             CcCCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCC
Q 047977            1 LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFL   80 (569)
Q Consensus         1 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~   80 (569)
                      ||+++|.+..+..+.|.++++|+.+++..|.++ .+|.......+|+.|++.+|.|...-...+.-++-|++||++.|.+
T Consensus        83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i  161 (873)
T KOG4194|consen   83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI  161 (873)
T ss_pred             eeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh
Confidence            577888888777888888888888888888777 6676666667788888888877766666777778888888888888


Q ss_pred             CCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcC
Q 047977           81 ETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPN  160 (569)
Q Consensus        81 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  160 (569)
                      ..+....|..-.++++|++++|.|+..-...|..+.+|..|.+++|+++ .+|...|.++++|+.|++..|++.-...-.
T Consensus       162 s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~lt  240 (873)
T KOG4194|consen  162 SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLT  240 (873)
T ss_pred             hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhh
Confidence            7777777777778888888888887666667777778888888888887 677777777888888888888776444556


Q ss_pred             CCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCC
Q 047977          161 VSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS  240 (569)
Q Consensus       161 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  240 (569)
                      |..+++|+.|.+..|.+.......|..+.+++.|++..|.+...-..|+-.++.|+.|+++.|.|..+.+..+..+++|+
T Consensus       241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~  320 (873)
T KOG4194|consen  241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLK  320 (873)
T ss_pred             hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccce
Confidence            77788888888888887766667777888888888888877766667777888888888888888777777777788888


Q ss_pred             EEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeC---CccccCCCCCcEEec
Q 047977          241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNI---PPEIGLLTKLQYLFL  317 (569)
Q Consensus       241 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l  317 (569)
                      +|+++.|++++..+..|..+..|++|+++.|.+. .+....|.++++|+.|+++.|.+...+   ...|.++++|++|.+
T Consensus       321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l  399 (873)
T KOG4194|consen  321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL  399 (873)
T ss_pred             eEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence            8888888888777777777788888888888776 666666777888888888887665432   344667788888888


Q ss_pred             ccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEccc
Q 047977          318 YRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFF  367 (569)
Q Consensus       318 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  367 (569)
                      .+|++......+|.++++|+.|++.+|.+..+-+.+|..+ .|++|.+..
T Consensus       400 ~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  400 TGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             cCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            8887776555677778888888888888776667777776 777776654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-37  Score=288.96  Aligned_cols=388  Identities=23%  Similarity=0.230  Sum_probs=227.5

Q ss_pred             cEEeccCCcccccCCcCCCC--CCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcc
Q 047977          144 EYLNLTDNQFQGKLSPNVSK--LSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLR  221 (569)
Q Consensus       144 ~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  221 (569)
                      +.|+.++..+...-...+..  .+.-++|++++|.+++..+..|.++++|+++.+..|.++ .+|...+...+++.|++.
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~  133 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLR  133 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeee
Confidence            44566665554322222211  234556777777777766666777777777777777776 456555555667777777


Q ss_pred             cCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceee
Q 047977          222 MNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGN  301 (569)
Q Consensus       222 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  301 (569)
                      .|.|.....+.++.++.|++++++.|.++......+..-.++++|++++|.|+ .+....|..+.+|..+.++.|.++..
T Consensus       134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittL  212 (873)
T KOG4194|consen  134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTL  212 (873)
T ss_pred             ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCccccc
Confidence            77777666666777777777777777776655555655566666666666666 44444456666666666666666644


Q ss_pred             CCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCC
Q 047977          302 IPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSM  381 (569)
Q Consensus       302 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  381 (569)
                      .+..|..+++|+.|++..|+|.-.-.-.|.++++|+.|.+..|.+.......|..+.++++|++..|++...-..++.++
T Consensus       213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL  292 (873)
T KOG4194|consen  213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL  292 (873)
T ss_pred             CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence            44455556666666666665542212345555666666666665554555555555556666665555554444555555


Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEE
Q 047977          382 ASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELT  461 (569)
Q Consensus       382 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  461 (569)
                      ++|+.|+++.|.+....++.+..++                         +|++|+|+.|++....+..+..+.+|++|.
T Consensus       293 t~L~~L~lS~NaI~rih~d~Wsftq-------------------------kL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln  347 (873)
T KOG4194|consen  293 TSLEQLDLSYNAIQRIHIDSWSFTQ-------------------------KLKELDLSSNRITRLDEGSFRVLSQLEELN  347 (873)
T ss_pred             chhhhhccchhhhheeecchhhhcc-------------------------cceeEeccccccccCChhHHHHHHHhhhhc
Confidence            5555555555555544444444444                         455555555554433334444455556666


Q ss_pred             ccCCcceeeCCccccCCCCCcEEEccCCccccchh---hhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCc
Q 047977          462 VNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNIT---RAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNK  538 (569)
Q Consensus       462 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~  538 (569)
                      +++|++.......|..+.+|++|||++|.++..+.   ..|..+++|+.|++.+|++....-.+|.++++|++|++.+|.
T Consensus       348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             ccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence            66665553333455556666666666666544332   235556666666666666654444456666666666666666


Q ss_pred             ceecCCcCccCCCCCCeEeCc
Q 047977          539 ISGGIPAELGNLTRLGVLSLD  559 (569)
Q Consensus       539 ~~~~~~~~l~~l~~L~~L~l~  559 (569)
                      |-++.+.+|..| .|++|-+.
T Consensus       428 iaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  428 IASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             ceeecccccccc-hhhhhhhc
Confidence            666666666666 66665543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=6.9e-39  Score=286.97  Aligned_cols=478  Identities=28%  Similarity=0.386  Sum_probs=373.7

Q ss_pred             CCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEe
Q 047977           68 RKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLN  147 (569)
Q Consensus        68 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  147 (569)
                      ..++.+.+++|.+.... ..+..+..|..+++.++... ..|.+++.+..++.++.++|++. .+|+.+ ....++++++
T Consensus        45 v~l~~lils~N~l~~l~-~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l~~l~  120 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLR-EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISLVKLD  120 (565)
T ss_pred             cchhhhhhccCchhhcc-HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhhhhhh
Confidence            46788888888877654 45678889999999999988 78888999999999999999987 778776 7888999999


Q ss_pred             ccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCc
Q 047977          148 LTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNS  227 (569)
Q Consensus       148 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  227 (569)
                      ++.+.+. ..++.++.+-.++.++..+|++. ..|+.+..+.++..+++.++++.. .|+..-.+..|++++...|.+. 
T Consensus       121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~-  196 (565)
T KOG0472|consen  121 CSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE-  196 (565)
T ss_pred             cccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-
Confidence            9999887 67778888889999999999887 567788889999999999999884 4544555888999998888776 


Q ss_pred             CCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCcccc
Q 047977          228 TIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIG  307 (569)
Q Consensus       228 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  307 (569)
                      ..|..++.+.+|+.+++..|++. ..| .|.++..|+++++..|.+. .++++...+++++..+|+++|+++ +.|..+.
T Consensus       197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c  272 (565)
T KOG0472|consen  197 TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC  272 (565)
T ss_pred             cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHH
Confidence            55677899999999999999987 445 7889999999999999887 778887889999999999999988 6788888


Q ss_pred             CCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccC--CCCCEEE-------c---ccCcccc-c-
Q 047977          308 LLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNL--TNLLSLQ-------L---FFNNLSG-T-  373 (569)
Q Consensus       308 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~-------l---~~~~~~~-~-  373 (569)
                      .+.+|..|++++|.++ ..|..++++ .|+.|.+.+|++..+-.+.+.+-  .-|++|.       +   .+..-+. . 
T Consensus       273 lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~  350 (565)
T KOG0472|consen  273 LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL  350 (565)
T ss_pred             HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence            8899999999999998 677788888 89999999998752211111100  0011110       0   0000000 0 


Q ss_pred             CC---ccccCCCCCCEEEccCCcccccCCccccCCC---CCCEEEccCCcccccCCchhhccCCCCceEEcccCcCcccc
Q 047977          374 IP---PEIGSMASLVAFDVNTNQLHGELPENISRLV---NLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGEL  447 (569)
Q Consensus       374 ~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~---~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  447 (569)
                      ..   .......+.+.|++++-+++ .+|.......   -+..++++.|++. .+|..+..+..-+..+.+++|.+. -+
T Consensus       351 ~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv  427 (565)
T KOG0472|consen  351 PSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FV  427 (565)
T ss_pred             CCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cc
Confidence            11   11233456788888888877 5665443333   3778889998887 667766665533445566666664 77


Q ss_pred             ChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCC
Q 047977          448 PYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECR  527 (569)
Q Consensus       448 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~  527 (569)
                      |..++.+++|+.|++++|-+. .+|..+..+..|+.|+++.|.|. ..|..+..+..++.+-.++|.+....+.+++++.
T Consensus       428 ~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~  505 (565)
T KOG0472|consen  428 PLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMR  505 (565)
T ss_pred             hHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence            888899999999999999887 78888888888999999999887 5788777788888888888998877777799999


Q ss_pred             CCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcc
Q 047977          528 NLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG  565 (569)
Q Consensus       528 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  565 (569)
                      +|..||+.+|.+. .+|..+++|++|++|.+.||||+.
T Consensus       506 nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr~  542 (565)
T KOG0472|consen  506 NLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFRQ  542 (565)
T ss_pred             hcceeccCCCchh-hCChhhccccceeEEEecCCccCC
Confidence            9999999999999 577789999999999999999984

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.3e-38  Score=285.10  Aligned_cols=479  Identities=28%  Similarity=0.354  Sum_probs=385.7

Q ss_pred             CCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEE
Q 047977           43 LSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLD  122 (569)
Q Consensus        43 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  122 (569)
                      -.-|+.+.+++|.+. .+...+.++..+.++++.+|.....+ .+++.+..++.++.+++.+. .+|..++..+.+++++
T Consensus        44 qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~lp-~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   44 QVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQLP-AAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD  120 (565)
T ss_pred             hcchhhhhhccCchh-hccHhhhcccceeEEEeccchhhhCC-HHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence            356899999999988 44556889999999999999887654 56788899999999999998 8999999999999999


Q ss_pred             cccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcce
Q 047977          123 LSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFT  202 (569)
Q Consensus       123 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  202 (569)
                      ++.|... +++..+ ..+..++.++..+|++. ..|+.+..+.++..+++.++.+....+..+. ++.|+.++...|.+.
T Consensus       121 ~s~n~~~-el~~~i-~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~  196 (565)
T KOG0472|consen  121 CSSNELK-ELPDSI-GRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE  196 (565)
T ss_pred             cccccee-ecCchH-HHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh
Confidence            9999988 666665 77789999999999998 6788888999999999999998855554444 999999999998887


Q ss_pred             ecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCcccc
Q 047977          203 GQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLI  282 (569)
Q Consensus       203 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  282 (569)
                       .+|+.++.+.+|+.|+++.|++.. .| .|.+|..|+++++..|.+.........+++++..|++++|+++ +.|.+ .
T Consensus       197 -tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde-~  271 (565)
T KOG0472|consen  197 -TLPPELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDE-I  271 (565)
T ss_pred             -cCChhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchH-H
Confidence             689999999999999999999974 44 7899999999999999998555555568999999999999998 55555 5


Q ss_pred             CCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccC-----CCCCCE----EEccCCccc------
Q 047977          283 GNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGK-----LTSLEK----LDLSGNQLS------  347 (569)
Q Consensus       283 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~----L~l~~~~~~------  347 (569)
                      .-+++|+.+|+++|.++ ..|..++++ .|+.|.+.+|++.+.-.+.+..     ++.|+.    =-++...-.      
T Consensus       272 clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t  349 (565)
T KOG0472|consen  272 CLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT  349 (565)
T ss_pred             HHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence            67899999999999998 578889999 9999999999876321111100     111111    001111000      


Q ss_pred             --cccCcccccCCCCCEEEcccCcccccCCccccCC--CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCC
Q 047977          348 --GTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSM--ASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIP  423 (569)
Q Consensus       348 --~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  423 (569)
                        ...........+.++|++++-+++....+.|...  .-.+.+++++|++. ++|..+..+..+.+.-+..++..+.+|
T Consensus       350 ~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~  428 (565)
T KOG0472|consen  350 LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVP  428 (565)
T ss_pred             CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccch
Confidence              0011122345678999999999884444444432  34889999999998 888877777666655444454554677


Q ss_pred             chhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCC
Q 047977          424 GDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHP  503 (569)
Q Consensus       424 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~  503 (569)
                      ..+..++ +|..|++++|.+. .+|...+.+..|+.|+++.|+|. ..|.++.....++.+-.++|.+....+..++++.
T Consensus       429 ~~l~~l~-kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~  505 (565)
T KOG0472|consen  429 LELSQLQ-KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMR  505 (565)
T ss_pred             HHHHhhh-cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence            7777776 9999999999886 78999999999999999999999 8999988888888888888999988888899999


Q ss_pred             CCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcce
Q 047977          504 RLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS  540 (569)
Q Consensus       504 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  540 (569)
                      .|..||+.+|.+. .+|+.++++++|++|++++|++.
T Consensus       506 nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  506 NLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            9999999999987 78999999999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=4.7e-35  Score=288.78  Aligned_cols=462  Identities=29%  Similarity=0.401  Sum_probs=270.9

Q ss_pred             CCEEECCCCCCCCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEecc
Q 047977           70 VRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLT  149 (569)
Q Consensus        70 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  149 (569)
                      ++.|+++.|.....+.....+..+|+.|++++|.+. ..|..+..+++|+.|+++.|.+. .+|... .++.+|+++.+.
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~-~~~~~l~~lnL~   99 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSC-SNMRNLQYLNLK   99 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhh-hhhhcchhheec
Confidence            444444444443333233333444555555555555 45555555556666666655554 344332 455556666665


Q ss_pred             CCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCC
Q 047977          150 DNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTI  229 (569)
Q Consensus       150 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  229 (569)
                      +|..+ ..|..+..+++|+.|+++.|.+. ..|..+..+..++.+..++|.....    ++... ++.+++..+.+....
T Consensus       100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~  172 (1081)
T KOG0618|consen  100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSF  172 (1081)
T ss_pred             cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccch
Confidence            55554 44555555666666666665554 2344444555555555555521111    11111 455555555544444


Q ss_pred             CcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCC
Q 047977          230 PPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLL  309 (569)
Q Consensus       230 ~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  309 (569)
                      ...+..+.+  .+++.+|.+.   ...+..+++|+.+....+.+. .+.    -.-++++.|+.+.|.+....+  ....
T Consensus       173 ~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p  240 (1081)
T KOG0618|consen  173 LIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDV--HPVP  240 (1081)
T ss_pred             hcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEE----ecCcchheeeeccCcceeecc--cccc
Confidence            444444443  4555555554   123445556666665555544 111    123667777777776663322  2234


Q ss_pred             CCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEc
Q 047977          310 TKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDV  389 (569)
Q Consensus       310 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  389 (569)
                      .+|+.++++.+.++ ..|.++..+.+|+.++...|.++ ..+..+....+|+.+.+..|++. .++......++|+.|++
T Consensus       241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence            56777777777777 55577777777777777777775 55666666777777777777776 45555666777777777


Q ss_pred             cCCcccccCCcc-ccCCCC-CCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcc
Q 047977          390 NTNQLHGELPEN-ISRLVN-LNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNF  467 (569)
Q Consensus       390 ~~~~~~~~~~~~-~~~l~~-L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  467 (569)
                      ..|.+. ..|.. +.-... ++.+..+.+++. ..|..-....+.|+.|++.+|.+++.....+-....|+.|++++|++
T Consensus       318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL  395 (1081)
T KOG0618|consen  318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL  395 (1081)
T ss_pred             hhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence            777776 33332 222222 455555555554 22221112223677788888888776666677777888888888887


Q ss_pred             eeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCccee-cCCcC
Q 047977          468 TGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISG-GIPAE  546 (569)
Q Consensus       468 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~-~~~~~  546 (569)
                      .......+.++..|++|++|+|+++ -+|..+.+++.|++|...+|.+. ..| .+..+++|+.+|++.|.++. ..|..
T Consensus       396 ~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~  472 (1081)
T KOG0618|consen  396 NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA  472 (1081)
T ss_pred             ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh
Confidence            7333356777888888888888887 35577778888888888888776 445 77778888888888887773 23332


Q ss_pred             ccCCCCCCeEeCcCCc
Q 047977          547 LGNLTRLGVLSLDSNE  562 (569)
Q Consensus       547 l~~l~~L~~L~l~~n~  562 (569)
                      .-. +.|++||++||.
T Consensus       473 ~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  473 LPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             CCC-cccceeeccCCc
Confidence            222 678888888876

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=5.1e-34  Score=281.55  Aligned_cols=505  Identities=26%  Similarity=0.313  Sum_probs=292.3

Q ss_pred             CcCCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCC
Q 047977            1 LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFL   80 (569)
Q Consensus         1 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~   80 (569)
                      +|.++++++ .+|+.+..-.++..|+++.|-+-....++..++.+|+.|++++|.+. .+|..+..+++|+.|+++.|.+
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i   80 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI   80 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence            578888887 66777777777999999988766444555666777999999999887 7888888999999999999988


Q ss_pred             CCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcC
Q 047977           81 ETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPN  160 (569)
Q Consensus        81 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  160 (569)
                      ...+ .....+.+|+++.|..|... ..|..+..+.+|+.|+++.|... .+|..+ ..+..++.+..++|.-. .   .
T Consensus        81 ~~vp-~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt~~~~~~~s~N~~~-~---~  152 (1081)
T KOG0618|consen   81 RSVP-SSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVI-EVLTAEEELAASNNEKI-Q---R  152 (1081)
T ss_pred             hhCc-hhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhH-HhhhHHHHHhhhcchhh-h---h
Confidence            7765 55677888999999888877 78888888888999999888876 556554 66677777777777211 1   1


Q ss_pred             CCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCC
Q 047977          161 VSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS  240 (569)
Q Consensus       161 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  240 (569)
                      ++... ++.+++..+.+.......+..++.  .+++..|.+..   ..+..+++|+.+....|++....    -.-++++
T Consensus       153 lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~  222 (1081)
T KOG0618|consen  153 LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELE----ISGPSLT  222 (1081)
T ss_pred             hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceEE----ecCcchh
Confidence            11111 556666655555444444444444  46666655541   12444555555555555543221    1124455


Q ss_pred             EEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccc
Q 047977          241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRN  320 (569)
Q Consensus       241 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  320 (569)
                      .++.+.|.++......  .-.+|+.++++.+... .++ +....+.+|+.++...|.++ ..|..+....+|+.+.+..|
T Consensus       223 ~L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~n  297 (1081)
T KOG0618|consen  223 ALYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYN  297 (1081)
T ss_pred             eeeeccCcceeecccc--ccccceeeecchhhhh-cch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhh
Confidence            5555555554222211  1235555555555554 333 33555555555555555553 34444444555555555555


Q ss_pred             cccccCCccccCCCCCCEEEccCCccccccCcccccCC-CCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCC
Q 047977          321 HFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLT-NLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP  399 (569)
Q Consensus       321 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  399 (569)
                      .+. -+|.....+++|++|++..|.+.......+.-.. ++..+..+.+++.......-...+.|+.|.+.+|.+++..-
T Consensus       298 el~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~  376 (1081)
T KOG0618|consen  298 ELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF  376 (1081)
T ss_pred             hhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch
Confidence            554 3444444455555555555555422221111111 13444444444432221122233455666666666655544


Q ss_pred             ccccCCCCCCEEEccCCcccccCCch-hhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCC
Q 047977          400 ENISRLVNLNKFSVFTNNFSGSIPGD-FGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNC  478 (569)
Q Consensus       400 ~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  478 (569)
                      ..+.+...|+.|.+++|++. .+|+. +.++. .|+.|++++|++. .+|..+..+..|++|...+|.+. ..| .+..+
T Consensus       377 p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle-~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l  451 (1081)
T KOG0618|consen  377 PVLVNFKHLKVLHLSYNRLN-SFPASKLRKLE-ELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQL  451 (1081)
T ss_pred             hhhccccceeeeeecccccc-cCCHHHHhchH-HhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhc
Confidence            45555666666666666655 33333 33333 6666666666665 55566666666666666666665 455 45566


Q ss_pred             CCCcEEEccCCccccch-hhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCC
Q 047977          479 SNLNRVRFDGNQFTGNI-TRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRN  537 (569)
Q Consensus       479 ~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n  537 (569)
                      +.|+.+|++.|.++... ++... -|.|++||++||.-.....+.|..+.++...++.-+
T Consensus       452 ~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  452 PQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             CcceEEecccchhhhhhhhhhCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            66666666666664322 22211 156666666666543333344555555555555444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=2.3e-32  Score=258.62  Aligned_cols=360  Identities=32%  Similarity=0.488  Sum_probs=269.9

Q ss_pred             CcCCCCCCc-ccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCC
Q 047977            1 LDLSHNNIS-GPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNF   79 (569)
Q Consensus         1 l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~   79 (569)
                      +|+++|.+. +.+|.....+++++.|.+..+++. .+|+.++.|.+|++|++++|++.+. -..+..++.||.+++..|.
T Consensus        12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~R~N~   89 (1255)
T KOG0444|consen   12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIVRDNN   89 (1255)
T ss_pred             ccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhhhccc
Confidence            588999998 567999999999999999998888 7888999999999999999988733 3447888999999998887


Q ss_pred             CCCC-CCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCC
Q 047977           80 LETP-DWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLS  158 (569)
Q Consensus        80 ~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  158 (569)
                      +... .+..+-.+..|..|++++|.+. ..|..+.+.+++-+|++++|+|. .+|..+|.++..|-.|++++|++. .+|
T Consensus        90 LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LP  166 (1255)
T KOG0444|consen   90 LKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLP  166 (1255)
T ss_pred             cccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcC
Confidence            7543 3455667888999999999988 77888888889999999999987 788888999999999999999887 667


Q ss_pred             cCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcce-ecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCC
Q 047977          159 PNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFT-GQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCT  237 (569)
Q Consensus       159 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  237 (569)
                      +-+..+.+|++|.+++|.+.......+..++.|++|.+++.+-+ .-+|..+..+.+|+.++++.|              
T Consensus       167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N--------------  232 (1255)
T KOG0444|consen  167 PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN--------------  232 (1255)
T ss_pred             HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc--------------
Confidence            77888888999999988876554455555566666666655432 234444444555555555544              


Q ss_pred             CCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEec
Q 047977          238 NLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFL  317 (569)
Q Consensus       238 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  317 (569)
                                .+. ..|..+.++++|+.|++++|.++ +.... .+.+.+|++|+++.|+++ .+|.++..+++|+.|++
T Consensus       233 ----------~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~-~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~  298 (1255)
T KOG0444|consen  233 ----------NLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMT-EGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYA  298 (1255)
T ss_pred             ----------CCC-cchHHHhhhhhhheeccCcCcee-eeecc-HHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHh
Confidence                      444 44555666666666666666665 22222 455677788888888777 56777777888888888


Q ss_pred             ccccccc-cCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCccc
Q 047977          318 YRNHFSG-PIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLH  395 (569)
Q Consensus       318 ~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  395 (569)
                      .+|+++- -+|..++.+.+|+++..++|.+. .+|..++.|+.|+.|.++.|.+. .+++.+.-++.|+.||+..|...
T Consensus       299 n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  299 NNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             ccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            7777653 36677777888888888777765 77778888888888888888776 66777777788888888777655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=3.1e-31  Score=251.01  Aligned_cols=364  Identities=25%  Similarity=0.339  Sum_probs=197.3

Q ss_pred             CCCCCEEEccCCccc-cCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEE
Q 047977          164 LSNLTVLRLATNKFS-GPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFL  242 (569)
Q Consensus       164 ~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  242 (569)
                      +|-.+-.++++|.++ ...|.....++.++.|.+....+. .+|+.++.+.+|++|.+..|++.... ..+..++.|+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH-GELSDLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh-hhhccchhhHHH
Confidence            455667788888877 456667777888888888877776 57777888888888888887765432 234556666666


Q ss_pred             Eccccccee-ccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEeccccc
Q 047977          243 ALAMNQLSG-GLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNH  321 (569)
Q Consensus       243 ~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  321 (569)
                      .+..|.+.. .+|..+-.+..|+.|+++.|++. +.|.. +....++-.|++++|++.+...+.|.++..|-.|++++|+
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~-LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTN-LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhh-hcchh-hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence            666665532 34444555566666666666655 33333 4444555566666665553322334455555566666665


Q ss_pred             ccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCccc-ccCCccccCCCCCCEEEccCCcccccCCc
Q 047977          322 FSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLS-GTIPPEIGSMASLVAFDVNTNQLHGELPE  400 (569)
Q Consensus       322 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  400 (569)
                      +. .+|...+.+..|++|++++|++...-...+..+++|++|.+++.+-+ ..++..+.++.+|..+|++.|.+. .+|.
T Consensus       162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe  239 (1255)
T KOG0444|consen  162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE  239 (1255)
T ss_pred             hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence            55 34444555556666666666554332233444455555555554433 124444555555555555555554 4555


Q ss_pred             cccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCccee-eCCccccCCC
Q 047977          401 NISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTG-SLPACMRNCS  479 (569)
Q Consensus       401 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~  479 (569)
                      ++..+++|+.|++++|.++.. ........ +|++|+++.|+++ .+|..++++++|+.|.+.+|+++- -+|..++.+.
T Consensus       240 cly~l~~LrrLNLS~N~iteL-~~~~~~W~-~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~  316 (1255)
T KOG0444|consen  240 CLYKLRNLRRLNLSGNKITEL-NMTEGEWE-NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI  316 (1255)
T ss_pred             HHhhhhhhheeccCcCceeee-eccHHHHh-hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence            555555555555555555421 11111111 4555555555554 445555555555555555554321 2344444444


Q ss_pred             CCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCc
Q 047977          480 NLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNK  538 (569)
Q Consensus       480 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~  538 (569)
                      .|+.+..++|.+. ..|+.+..|+.|+.|.+..|.+. .+|++++-++-|+.|++..|.
T Consensus       317 ~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  317 QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence            5555555444443 34444445555555555544443 344455555555555555443

>PLN03210 Resistant to P

Probab=99.91  E-value=1.7e-22  Score=223.19  Aligned_cols=288  Identities=21%  Similarity=0.272  Sum_probs=120.0

Q ss_pred             CCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEE
Q 047977          261 SRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLD  340 (569)
Q Consensus       261 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  340 (569)
                      .+|+.|++.++.+. .++.. ...+++|+.++++++.....+| .++.+++|+.|++++|.....+|..+..+++|+.|+
T Consensus       611 ~~L~~L~L~~s~l~-~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        611 ENLVKLQMQGSKLE-KLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             cCCcEEECcCcccc-ccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            44444444444433 12111 2334444444444433222222 133444444444444433334444444444444444


Q ss_pred             ccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccc
Q 047977          341 LSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSG  420 (569)
Q Consensus       341 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  420 (569)
                      +++|.....++..+ ++++|+.|++++|.....++..   ..+|+.|+++++.+. .+|..+ .+++|+.|.+.++....
T Consensus       688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~  761 (1153)
T PLN03210        688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEK  761 (1153)
T ss_pred             CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhh
Confidence            44443322333222 3444444444444332222211   234444444444433 233222 23444444443321100


Q ss_pred             ------cCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccc
Q 047977          421 ------SIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGN  494 (569)
Q Consensus       421 ------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  494 (569)
                            ..+......+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|.....
T Consensus       762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~  840 (1153)
T PLN03210        762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT  840 (1153)
T ss_pred             ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence                  0001111122355555555554444455555555555555555543222344333 445555555555543322


Q ss_pred             hhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCc
Q 047977          495 ITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNE  562 (569)
Q Consensus       495 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  562 (569)
                      .|.   ..++|++|++++|.+. .+|..+..+++|+.|++++|.-...+|..+..+++|+.+++++|+
T Consensus       841 ~p~---~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        841 FPD---ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ccc---cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            322   1244555555555544 344445555555555555543332344444455555555555443

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.91  E-value=2.6e-22  Score=221.81  Aligned_cols=339  Identities=19%  Similarity=0.243  Sum_probs=209.8

Q ss_pred             cCcCCCCCCcEEEcccCc------ceecCCccccCCC-CCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCc
Q 047977          183 GDIGLMSNIQLVELFNNS------FTGQIPSSLGQLK-NLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPL  255 (569)
Q Consensus       183 ~~l~~~~~L~~L~l~~~~------~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~  255 (569)
                      ..|..+++|+.|.+..+.      ....+|..+..++ +|+.|.+.++++... |..+ .+.+|+.|++.++.+.. .+.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l-P~~f-~~~~L~~L~L~~s~l~~-L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM-PSNF-RPENLVKLQMQGSKLEK-LWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC-CCcC-CccCCcEEECcCccccc-ccc
Confidence            345667777777665432      1123444454443 577777777666533 3334 35677777777777663 344


Q ss_pred             cCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCC
Q 047977          256 SLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTS  335 (569)
Q Consensus       256 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  335 (569)
                      .+..+++|+.++++++.....++.  +..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ .+++
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s  705 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS  705 (1153)
T ss_pred             ccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence            456677777777777654445543  5667777777777776655667777777777777777775444555443 5677


Q ss_pred             CCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccc-------cCCccccCCCCC
Q 047977          336 LEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHG-------ELPENISRLVNL  408 (569)
Q Consensus       336 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~l~~L  408 (569)
                      |+.|++++|......+.   ..++|++|++++|.+. .++..+ .+++|+.|.+.++....       ..+......++|
T Consensus       706 L~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL  780 (1153)
T PLN03210        706 LYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL  780 (1153)
T ss_pred             CCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence            77777777765433332   2356777777777765 333332 45666666665543210       011112224567


Q ss_pred             CEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccC
Q 047977          409 NKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDG  488 (569)
Q Consensus       409 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  488 (569)
                      +.|++++|.....+|..+..++ +|+.|++++|.....+|..+ .+++|+.|++++|......|..   .++|++|++++
T Consensus       781 ~~L~Ls~n~~l~~lP~si~~L~-~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~  855 (1153)
T PLN03210        781 TRLFLSDIPSLVELPSSIQNLH-KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSR  855 (1153)
T ss_pred             hheeCCCCCCccccChhhhCCC-CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCC
Confidence            7777777766666777776665 77777777775444555544 5677777777777543334432   25677777777


Q ss_pred             CccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCc
Q 047977          489 NQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNK  538 (569)
Q Consensus       489 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~  538 (569)
                      |.+. .+|.+++.+++|++|++++|+-...+|..+..+++|+.+++++|.
T Consensus       856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            7776 456667777777777777776555566666777777777777774

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=3.4e-25  Score=199.08  Aligned_cols=421  Identities=21%  Similarity=0.189  Sum_probs=260.1

Q ss_pred             CcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccc-CccccCCchhhh
Q 047977           59 AFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSL-NKLSGLIPERLF  137 (569)
Q Consensus        59 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~  137 (569)
                      .+|..++  +.-..+++..|.|+.+++.+|+.+++|+.|||++|.|..+.|++|..++.+..|.+.+ |+|+ .++..+|
T Consensus        60 eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F  136 (498)
T KOG4237|consen   60 EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAF  136 (498)
T ss_pred             cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHh
Confidence            4555444  3566788888888888888888888888888888888888888888888888887776 7777 7888888


Q ss_pred             hcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCE
Q 047977          138 TNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQH  217 (569)
Q Consensus       138 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  217 (569)
                      .++..++.|.+..+++.......+..++++..|.+..+.+..+....+..+..++.+.+..+.+..     ..+++.+..
T Consensus       137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~  211 (498)
T KOG4237|consen  137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLAD  211 (498)
T ss_pred             hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhh
Confidence            888888888888888776667778888888888888887765555567777777777666555321     111221111


Q ss_pred             EEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcC-CCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCC
Q 047977          218 LDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSN-LSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNN  296 (569)
Q Consensus       218 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  296 (569)
                      ...       ..+..++...-.....+...++.+.....+.. ...+..--.+.+......+...|..+++|+.+++++|
T Consensus       212 ~~a-------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN  284 (498)
T KOG4237|consen  212 DLA-------MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN  284 (498)
T ss_pred             HHh-------hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence            110       01111222222222223333333222222211 1111111122333444666677888888888888888


Q ss_pred             cceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccc----
Q 047977          297 SFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSG----  372 (569)
Q Consensus       297 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----  372 (569)
                      +++..-+.+|....++++|.+.+|++...-..+|.++..|+.|++.+|+++...+..|..+.+|.+|.+-.|++--    
T Consensus       285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l  364 (498)
T KOG4237|consen  285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL  364 (498)
T ss_pred             ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch
Confidence            8887777788888888888888888775555678888888888888888888888888888888888888776531    


Q ss_pred             -cCCcccc-----------CCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEccc
Q 047977          373 -TIPPEIG-----------SMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSN  440 (569)
Q Consensus       373 -~~~~~~~-----------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  440 (569)
                       .+.+|+.           ....++.+.+++..+...-      +..=++.   +|.-++..|..-    +.+.+..=..
T Consensus       365 ~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~------c~~~ee~---~~~~s~~cP~~c----~c~~tVvRcS  431 (498)
T KOG4237|consen  365 AWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFR------CGGPEEL---GCLTSSPCPPPC----TCLDTVVRCS  431 (498)
T ss_pred             HHHHHHHhhCCCCCCCCCCCCchhccccchhccccccc------cCCcccc---CCCCCCCCCCCc----chhhhhHhhc
Confidence             1111211           1222333333333222100      0000000   000011111111    1222222222


Q ss_pred             CcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCC
Q 047977          441 NSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGN  513 (569)
Q Consensus       441 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  513 (569)
                      +.....+|..+..  .-++|++.+|.++ .+|..  .+.+| .+|+++|+++......|.+++.|.+|-|++|
T Consensus       432 nk~lk~lp~~iP~--d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  432 NKLLKLLPRGIPV--DVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             ccchhhcCCCCCc--hhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            2222244443322  4578888888888 66664  55677 8888988888666777888888888888775

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=7.1e-25  Score=197.04  Aligned_cols=411  Identities=22%  Similarity=0.223  Sum_probs=236.3

Q ss_pred             CCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccC-CccccCCCcCcCCCCCCcEE
Q 047977          116 RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLAT-NKFSGPIPGDIGLMSNIQLV  194 (569)
Q Consensus       116 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L  194 (569)
                      +.-..+++..|.|+ .+|..+|..+++||+|++++|.++.+.+.+|..++++..|-+.+ |++++.....|.++..++.|
T Consensus        67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            35667888888887 77888888888888888888888878888888888887777766 77777777778888888888


Q ss_pred             EcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCc
Q 047977          195 ELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLS  274 (569)
Q Consensus       195 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  274 (569)
                      .+..+++.....+.|.+++++..|.+.+|.+..+....|..+..++.+.+..+.+..     ..+++.+.......... 
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~a~~~ie-  219 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDLAMNPIE-  219 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhHHhhchhh-
Confidence            888888777777778888888888888888776666677778888888777665321     11222222111100000 


Q ss_pred             cccCccccCCCCCCcEEEccCCcceeeCCccccC-CCCCcEEecccccccccC-CccccCCCCCCEEEccCCccccccCc
Q 047977          275 GEISANLIGNWTELESLQIQNNSFMGNIPPEIGL-LTKLQYLFLYRNHFSGPI-PSEIGKLTSLEKLDLSGNQLSGTIPP  352 (569)
Q Consensus       275 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~  352 (569)
                             +++++-.....+....+..+-+..|.. ..++.+=..+.|...... ...|..+++|++|++++|.++.+...
T Consensus       220 -------tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~  292 (498)
T KOG4237|consen  220 -------TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG  292 (498)
T ss_pred             -------cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence                   111111111112222221111111111 111111111122111111 13456666666677766666666666


Q ss_pred             ccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccccc-CCchhhc---
Q 047977          353 TLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGS-IPGDFGK---  428 (569)
Q Consensus       353 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~---  428 (569)
                      +|.....+++|.+.+|++.......|.++..|+.|++++|+++...|..|..+.+|.++++..|.+.-. -..++..   
T Consensus       293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr  372 (498)
T KOG4237|consen  293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLR  372 (498)
T ss_pred             hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHh
Confidence            666666677777766666555555666666677777777777666666666666677766666544211 0111111   


Q ss_pred             -----------cCCCCceEEcccCcCccc---cChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccc
Q 047977          429 -----------FSPSLINVSFSNNSFSGE---LPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGN  494 (569)
Q Consensus       429 -----------~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  494 (569)
                                 -|-.++.+.+++..+.+.   .|+..            +|  . ..+.+-..|+-+....=..|+....
T Consensus       373 ~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~------------~~--~-~s~~cP~~c~c~~tVvRcSnk~lk~  437 (498)
T KOG4237|consen  373 KKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEEL------------GC--L-TSSPCPPPCTCLDTVVRCSNKLLKL  437 (498)
T ss_pred             hCCCCCCCCCCCCchhccccchhccccccccCCcccc------------CC--C-CCCCCCCCcchhhhhHhhcccchhh
Confidence                       011233333333332110   00000            00  0 1112233444454443333444444


Q ss_pred             hhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCC
Q 047977          495 ITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSN  561 (569)
Q Consensus       495 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  561 (569)
                      +|..  -...-.+|++.+|.++ .+|..  .+.+| .+++++|+++...-..|.+|+.|..|-|++|
T Consensus       438 lp~~--iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  438 LPRG--IPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             cCCC--CCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            5543  2346677888888877 44554  55667 7888888888766677788888888888775

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=3.9e-19  Score=182.28  Aligned_cols=238  Identities=27%  Similarity=0.404  Sum_probs=110.8

Q ss_pred             CCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcc
Q 047977          287 ELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLF  366 (569)
Q Consensus       287 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  366 (569)
                      +++.|++.+|.+.. +|.   .+++|++|++++|+++ .+|..   .++|+.|++++|.+. .++..   .++|+.|+++
T Consensus       223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls  290 (788)
T PRK15387        223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIF  290 (788)
T ss_pred             CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECc
Confidence            44445555444442 222   1344555555555544 22221   234555555555444 22211   1344555555


Q ss_pred             cCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccc
Q 047977          367 FNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGE  446 (569)
Q Consensus       367 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  446 (569)
                      +|.++. ++.   ..++|+.|++++|.+. .+|..   ..+|+.|.+++|.+++ +|.    .+++|+.|++++|.+. .
T Consensus       291 ~N~Lt~-LP~---~p~~L~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N~L~~-LP~----lp~~Lq~LdLS~N~Ls-~  356 (788)
T PRK15387        291 GNQLTS-LPV---LPPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQLTS-LPT----LPSGLQELSVSDNQLA-S  356 (788)
T ss_pred             CCcccc-ccc---cccccceeECCCCccc-cCCCC---cccccccccccCcccc-ccc----cccccceEecCCCccC-C
Confidence            555442 221   1244555555555554 22221   1234455555555542 221    2235555555555554 2


Q ss_pred             cChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccC
Q 047977          447 LPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGEC  526 (569)
Q Consensus       447 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~  526 (569)
                      +|..   ..+|+.|++++|.+. .+|...   .+|+.|++++|.++. +|..   .++|+.|++++|.+. .+|..   .
T Consensus       357 LP~l---p~~L~~L~Ls~N~L~-~LP~l~---~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~  421 (788)
T PRK15387        357 LPTL---PSELYKLWAYNNRLT-SLPALP---SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---P  421 (788)
T ss_pred             CCCC---Ccccceehhhccccc-cCcccc---cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---h
Confidence            3321   234555555555555 334321   345566666665552 2221   245666666666654 23432   2


Q ss_pred             CCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCccc
Q 047977          527 RNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGK  566 (569)
Q Consensus       527 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  566 (569)
                      .+|+.|++++|+++ .+|..+..+++|+.|++++|+|+|.
T Consensus       422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence            24555666666665 3555555666666666666666554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.78  E-value=1.6e-18  Score=177.76  Aligned_cols=262  Identities=27%  Similarity=0.368  Sum_probs=143.5

Q ss_pred             CEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEeccc
Q 047977          240 SFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYR  319 (569)
Q Consensus       240 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  319 (569)
                      ..++++.+.++ .+|..+.  ++|+.|.+.+|.++ .++.    ..++|+.|++++|.+.. +|.   .+++|+.|++++
T Consensus       204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~Ls~  271 (788)
T PRK15387        204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFS  271 (788)
T ss_pred             cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCc-ccC---cccccceeeccC
Confidence            34455555444 2233232  24555555555554 2322    13556666666665552 232   134566666666


Q ss_pred             ccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCC
Q 047977          320 NHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP  399 (569)
Q Consensus       320 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  399 (569)
                      |.+. .+|..   ..+|+.|++++|.+.. ++.   ..++|+.|++++|.++. ++.   ....|+.|++++|.+. .+|
T Consensus       272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~---lp~~L~~L~Ls~N~L~-~LP  338 (788)
T PRK15387        272 NPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLP  338 (788)
T ss_pred             Cchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCC---CcccccccccccCccc-ccc
Confidence            6655 23321   2356666666666552 222   13556666666666552 222   1234666666666665 333


Q ss_pred             ccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCC
Q 047977          400 ENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCS  479 (569)
Q Consensus       400 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~  479 (569)
                      . +  ..+|+.|++++|++++ +|.    .+++|+.|++++|.+. .+|..   ..+|+.|++++|.++ .+|...   +
T Consensus       339 ~-l--p~~Lq~LdLS~N~Ls~-LP~----lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l~---s  402 (788)
T PRK15387        339 T-L--PSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVLP---S  402 (788)
T ss_pred             c-c--ccccceEecCCCccCC-CCC----CCcccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCcc---c
Confidence            2 1  1356667777766663 332    2346666777777665 34432   245777777777766 344322   4


Q ss_pred             CCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCc
Q 047977          480 NLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAEL  547 (569)
Q Consensus       480 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l  547 (569)
                      +|+.|++++|.++. +|..   +.+|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+
T Consensus       403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            67777777777763 3432   345667777777766 566667777777777777777776555544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.76  E-value=6.7e-20  Score=176.80  Aligned_cols=209  Identities=22%  Similarity=0.247  Sum_probs=125.9

Q ss_pred             cccCCCCCEEEcccCcccccCCccccCC---CCCCEEEccCCcccc----cCCccccCC-CCCCEEEccCCcccccC---
Q 047977          354 LWNLTNLLSLQLFFNNLSGTIPPEIGSM---ASLVAFDVNTNQLHG----ELPENISRL-VNLNKFSVFTNNFSGSI---  422 (569)
Q Consensus       354 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~----~~~~~~~~l-~~L~~l~l~~~~~~~~~---  422 (569)
                      +..+++|+.|++++|.+....+..+..+   ++|+.|++++|.+.+    .+...+..+ ++|+.+++++|.+++..   
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  156 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA  156 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence            3344455555555554432222222222   236666665555542    112233444 66677777777665322   


Q ss_pred             -CchhhccCCCCceEEcccCcCccc----cChhhhCCCCCcEEEccCCcceee----CCccccCCCCCcEEEccCCcccc
Q 047977          423 -PGDFGKFSPSLINVSFSNNSFSGE----LPYELCSGFALEELTVNGNNFTGS----LPACMRNCSNLNRVRFDGNQFTG  493 (569)
Q Consensus       423 -~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~  493 (569)
                       ...+..+. +|+.|++++|.+.+.    ++..+...++|++|++++|.+++.    +...+..+++|++|++++|.+.+
T Consensus       157 ~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         157 LAKALRANR-DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HHHHHHhCC-CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence             22233333 677788877777632    223344556888888888877532    23456678889999999998875


Q ss_pred             chhhhhc-----CCCCCcEEeCcCCcccc----cCCcCcccCCCCCEEECCCCcceec----CCcCccCC-CCCCeEeCc
Q 047977          494 NITRAFG-----VHPRLDFIRLSGNHFIG----EISPDWGECRNLSNLQLDRNKISGG----IPAELGNL-TRLGVLSLD  559 (569)
Q Consensus       494 ~~~~~l~-----~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~----~~~~l~~l-~~L~~L~l~  559 (569)
                      .....+.     ..+.|++|++++|.+++    .+...+..++.|+.+++++|.++..    ....+... +.|+++++.
T Consensus       236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~  315 (319)
T cd00116         236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK  315 (319)
T ss_pred             HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence            3333322     24789999999998762    2233466678899999999998854    33334444 689999998


Q ss_pred             CCcC
Q 047977          560 SNEL  563 (569)
Q Consensus       560 ~n~~  563 (569)
                      .|+|
T Consensus       316 ~~~~  319 (319)
T cd00116         316 DDSF  319 (319)
T ss_pred             CCCC
Confidence            8875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=5.5e-18  Score=175.16  Aligned_cols=246  Identities=24%  Similarity=0.429  Sum_probs=119.2

Q ss_pred             CCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEc
Q 047977          262 RLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDL  341 (569)
Q Consensus       262 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  341 (569)
                      +...|++++..++ .++.. +  .+.++.|++++|.+. .+|..+  .++|+.|++++|.++ .+|..+.  .+|+.|++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~-I--p~~L~~L~Ls~N~Lt-sLP~~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLT-TIPAC-I--PEQITTLILDNNELK-SLPENL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcC-cCCcc-c--ccCCcEEEecCCCCC-cCChhh--ccCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            4456666665555 33332 1  245666666666655 233332  245666666666655 3444332  25666666


Q ss_pred             cCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccccc
Q 047977          342 SGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGS  421 (569)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~  421 (569)
                      ++|.+. .++..+.  .+|+.|++++|.+. .++..+.  ++|+.|++++|.+. .+|..+.  ++|+.|++++|.++. 
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-  318 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-  318 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-
Confidence            666655 3333332  35666666666555 2333221  35666666666555 2333222  345555555555542 


Q ss_pred             CCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcC
Q 047977          422 IPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGV  501 (569)
Q Consensus       422 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~  501 (569)
                      +|..+.   ++|+.|++++|.++ .+|..+.  ++|+.|++++|++. .+|..+.  ++|+.|++++|.++. +|..+. 
T Consensus       319 LP~~l~---~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~-  387 (754)
T PRK15370        319 LPETLP---PGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP-  387 (754)
T ss_pred             CCcccc---ccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH-
Confidence            232221   25555555555554 2343332  35555555555554 3443332  455555555555552 333222 


Q ss_pred             CCCCcEEeCcCCcccccCCcCc----ccCCCCCEEECCCCcce
Q 047977          502 HPRLDFIRLSGNHFIGEISPDW----GECRNLSNLQLDRNKIS  540 (569)
Q Consensus       502 l~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~n~~~  540 (569)
                       ++|+.|++++|.+. .+|..+    ...+.+..|++.+|.++
T Consensus       388 -~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        388 -AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             -HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence             24555555555554 333332    22345555555555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=3.4e-19  Score=171.86  Aligned_cols=208  Identities=23%  Similarity=0.277  Sum_probs=114.4

Q ss_pred             cCCCCCCEEEccCCccccccCcccccCCC---CCEEEcccCcccc----cCCccccCC-CCCCEEEccCCcccc----cC
Q 047977          331 GKLTSLEKLDLSGNQLSGTIPPTLWNLTN---LLSLQLFFNNLSG----TIPPEIGSM-ASLVAFDVNTNQLHG----EL  398 (569)
Q Consensus       331 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---L~~L~l~~~~~~~----~~~~~~~~~-~~L~~L~l~~~~~~~----~~  398 (569)
                      ..+++|++|++++|.+....+..+..+..   |++|++++|.+..    .+...+..+ ++|+.+++++|.+++    .+
T Consensus        78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            33444555555444443222222222222   5555555554431    111122333 555556655555542    12


Q ss_pred             CccccCCCCCCEEEccCCccccc----CCchhhccCCCCceEEcccCcCccc----cChhhhCCCCCcEEEccCCcceee
Q 047977          399 PENISRLVNLNKFSVFTNNFSGS----IPGDFGKFSPSLINVSFSNNSFSGE----LPYELCSGFALEELTVNGNNFTGS  470 (569)
Q Consensus       399 ~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~  470 (569)
                      +..+..+++|+.+++++|.+++.    ++..+... ++|+.|++++|.+.+.    +...+..+++|+.|++++|.+++.
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~  236 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA  236 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence            23444555666666666665532    11222333 2777777777766533    223445567788888888877642


Q ss_pred             CCccc-----cCCCCCcEEEccCCcccc----chhhhhcCCCCCcEEeCcCCccccc----CCcCcccC-CCCCEEECCC
Q 047977          471 LPACM-----RNCSNLNRVRFDGNQFTG----NITRAFGVHPRLDFIRLSGNHFIGE----ISPDWGEC-RNLSNLQLDR  536 (569)
Q Consensus       471 ~~~~l-----~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~~-~~L~~L~l~~  536 (569)
                      ....+     ...+.|++|++++|.++.    .....+..+++|+++++++|++.+.    ..+.+... +.|+.+++.+
T Consensus       237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (319)
T cd00116         237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD  316 (319)
T ss_pred             HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence            22211     124788888888888762    2344566778888888888888744    34445555 6888888877


Q ss_pred             Ccc
Q 047977          537 NKI  539 (569)
Q Consensus       537 n~~  539 (569)
                      |++
T Consensus       317 ~~~  319 (319)
T cd00116         317 DSF  319 (319)
T ss_pred             CCC
Confidence            753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.72  E-value=1.4e-17  Score=172.20  Aligned_cols=246  Identities=24%  Similarity=0.391  Sum_probs=154.7

Q ss_pred             CCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEec
Q 047977          238 NLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFL  317 (569)
Q Consensus       238 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  317 (569)
                      +...+++++..++. +|..+.  +.++.|++++|.++ .++...   .++|+.|++++|.+. .+|..+  .++|+.|++
T Consensus       179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l---~~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENL---QGNIKTLYANSNQLT-SIPATL--PDTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhh---ccCCCEEECCCCccc-cCChhh--hccccEEEC
Confidence            45667777766663 333332  46777777777776 444432   246777888777766 344433  346777888


Q ss_pred             ccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCccccc
Q 047977          318 YRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGE  397 (569)
Q Consensus       318 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  397 (569)
                      ++|.+. .+|..+.  .+|+.|++++|.+. .++..+.  ++|+.|++++|.++. ++..+  .++|+.|++++|.+. .
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt-~  318 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLT-A  318 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCccc-c
Confidence            777776 5555443  36777888777776 3444443  477778887777763 33322  246777777777776 3


Q ss_pred             CCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccC
Q 047977          398 LPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRN  477 (569)
Q Consensus       398 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  477 (569)
                      +|..+  .++|+.|.+++|.+++ +|..+.   ++|+.|++++|.+. .+|..+  .++|+.|++++|.++ .+|..+. 
T Consensus       319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~---~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~-  387 (754)
T PRK15370        319 LPETL--PPGLKTLEAGENALTS-LPASLP---PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP-  387 (754)
T ss_pred             CCccc--cccceeccccCCcccc-CChhhc---CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH-
Confidence            44433  2577777777777763 454432   47778888877775 455444  257778888887777 4555443 


Q ss_pred             CCCCcEEEccCCccccchhh----hhcCCCCCcEEeCcCCccc
Q 047977          478 CSNLNRVRFDGNQFTGNITR----AFGVHPRLDFIRLSGNHFI  516 (569)
Q Consensus       478 ~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~  516 (569)
                       .+|+.|++++|.+.. +|.    .++.++.+..|++.+|++.
T Consensus       388 -~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        388 -AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             -HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence             357777777777763 333    3344577777788777765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=1.7e-17  Score=132.48  Aligned_cols=153  Identities=27%  Similarity=0.432  Sum_probs=77.5

Q ss_pred             CCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEE
Q 047977          405 LVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRV  484 (569)
Q Consensus       405 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  484 (569)
                      +..++.+.+++|+++ .+|.....+. +|+.|++++|++. .+|..++.+++|+.|++.-|++. ..|..|+.+|-|+.|
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~-nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELK-NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhh-hhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            444444555555544 3333344443 5555555555554 44445555555555555555554 455555555555555


Q ss_pred             EccCCcccc-chhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcC
Q 047977          485 RFDGNQFTG-NITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNEL  563 (569)
Q Consensus       485 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  563 (569)
                      |+++|.+.. ..|..|-.++.|+-|++++|.+. .+|.+.+.+++|+.|.+.+|.+. ..|..++.++.|++|.|+||++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            555555432 34444444555555555555554 44555555555555555555544 3455555555555555555554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=7.4e-17  Score=128.82  Aligned_cols=154  Identities=32%  Similarity=0.483  Sum_probs=104.4

Q ss_pred             CcCCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCC
Q 047977            1 LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFL   80 (569)
Q Consensus         1 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~   80 (569)
                      |.||+|.++ ..|..++.+++|++|++.+|++. .+|..++.+++|+.|++.-|++. ..|..|+.+|-|+.||+.+|.+
T Consensus        38 LtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl  114 (264)
T KOG0617|consen   38 LTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNL  114 (264)
T ss_pred             hhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcccccc
Confidence            346777776 44445777777777777777777 56777777777777777776665 6677777777777777777765


Q ss_pred             CC-CCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCc
Q 047977           81 ET-PDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSP  159 (569)
Q Consensus        81 ~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  159 (569)
                      .. ..+..|..+..|+.|.+++|++. .+|..++++++|+.|.+..|.+- .+|..+ +.+.+|++|.+.+|+++ .+|+
T Consensus       115 ~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkei-g~lt~lrelhiqgnrl~-vlpp  190 (264)
T KOG0617|consen  115 NENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEI-GDLTRLRELHIQGNRLT-VLPP  190 (264)
T ss_pred             ccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHH-HHHHHHHHHhcccceee-ecCh
Confidence            43 33445556677777777777776 66677777777777777777655 456555 66677777777777766 3443


Q ss_pred             CC
Q 047977          160 NV  161 (569)
Q Consensus       160 ~l  161 (569)
                      .+
T Consensus       191 el  192 (264)
T KOG0617|consen  191 EL  192 (264)
T ss_pred             hh
Confidence            33

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.30  E-value=6.5e-13  Score=116.27  Aligned_cols=132  Identities=20%  Similarity=0.261  Sum_probs=96.5

Q ss_pred             CCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCc
Q 047977          432 SLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLS  511 (569)
Q Consensus       432 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  511 (569)
                      .|+.+++++|.++ .+.++..-.|.++.|++++|.+. .+.. ++.+++|+.||+++|.++. +..+=..+-+++.|.++
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHh-hhhhHhhhcCEeeeehh
Confidence            6667777777765 45556666678888888888887 3333 7778888888888888773 33333456788888888


Q ss_pred             CCcccccCCcCcccCCCCCEEECCCCcceec-CCcCccCCCCCCeEeCcCCcCcccCCC
Q 047977          512 GNHFIGEISPDWGECRNLSNLQLDRNKISGG-IPAELGNLTRLGVLSLDSNELTGKNSY  569 (569)
Q Consensus       512 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~  569 (569)
                      +|.+.+.  .+++.+-+|..||+++|+|... ....++++|.|+++.+.+||+++.--|
T Consensus       361 ~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  361 QNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             hhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            8887644  6788888888888888888732 334578888899999999988876443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=5.5e-13  Score=122.84  Aligned_cols=88  Identities=18%  Similarity=0.184  Sum_probs=45.2

Q ss_pred             CCCCCCEEEccCCccccccC-cccccCCCCCEEEcccCccccc--CCccccCCCCCCEEEccCCcccccCCcc-ccCCCC
Q 047977          332 KLTSLEKLDLSGNQLSGTIP-PTLWNLTNLLSLQLFFNNLSGT--IPPEIGSMASLVAFDVNTNQLHGELPEN-ISRLVN  407 (569)
Q Consensus       332 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~  407 (569)
                      ++..|+++.+.++++..... .....|+.++.|++++|-+...  +......+|+|+.|+++.|.+....... -..++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            45667777777776652221 3455666677777776655422  1223345566666666666554221111 112444


Q ss_pred             CCEEEccCCccc
Q 047977          408 LNKFSVFTNNFS  419 (569)
Q Consensus       408 L~~l~l~~~~~~  419 (569)
                      ++.|.++.|.++
T Consensus       199 lK~L~l~~CGls  210 (505)
T KOG3207|consen  199 LKQLVLNSCGLS  210 (505)
T ss_pred             hheEEeccCCCC
Confidence            555555555444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.25  E-value=4.7e-13  Score=119.88  Aligned_cols=185  Identities=21%  Similarity=0.265  Sum_probs=126.5

Q ss_pred             cCCCCCCEEEccCCcccccCC----ccccCCCCCCEEEccCCcccccCCch------------hhccCCCCceEEcccCc
Q 047977          379 GSMASLVAFDVNTNQLHGELP----ENISRLVNLNKFSVFTNNFSGSIPGD------------FGKFSPSLINVSFSNNS  442 (569)
Q Consensus       379 ~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~l~l~~~~~~~~~~~~------------~~~~~~~L~~L~l~~~~  442 (569)
                      ..++.|+++++++|-+....+    ..+..+..|+.|.+.+|.+...--..            ....++.|+++...+|+
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            345556666666654432211    23445666666666666654221111            11234689999999998


Q ss_pred             Cccc----cChhhhCCCCCcEEEccCCccee----eCCccccCCCCCcEEEccCCcccc----chhhhhcCCCCCcEEeC
Q 047977          443 FSGE----LPYELCSGFALEELTVNGNNFTG----SLPACMRNCSNLNRVRFDGNQFTG----NITRAFGVHPRLDFIRL  510 (569)
Q Consensus       443 ~~~~----~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l  510 (569)
                      +.+.    +...+...+.|+.+.+..|.+..    .+...+..|++|+.|||..|-++.    .+...+..+++|++|++
T Consensus       169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence            8643    22355667899999999997653    223457899999999999998864    34455778899999999


Q ss_pred             cCCcccccCCcCc-----ccCCCCCEEECCCCccee----cCCcCccCCCCCCeEeCcCCcC
Q 047977          511 SGNHFIGEISPDW-----GECRNLSNLQLDRNKISG----GIPAELGNLTRLGVLSLDSNEL  563 (569)
Q Consensus       511 ~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~  563 (569)
                      ++|.+.......|     ...|.|+.+.+.+|.|+.    .+..++...+.|..|++++|.+
T Consensus       249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            9998875543332     448899999999998883    3444556789999999999998

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.25  E-value=2.1e-13  Score=129.53  Aligned_cols=171  Identities=27%  Similarity=0.446  Sum_probs=116.7

Q ss_pred             CCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEcc
Q 047977          384 LVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVN  463 (569)
Q Consensus       384 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  463 (569)
                      -...|++.|.+. ++|..+..+..|+.+.+++|.+- .+|.....+. .|.+++++.|++. .+|..++.+ -|+.|.++
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~-~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~s  151 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLE-ALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVS  151 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhh-HHHHhhhccchhh-cCChhhhcC-cceeEEEe
Confidence            334455666665 55555555666666666666655 5566666655 6777777777765 566666655 46777777


Q ss_pred             CCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecC
Q 047977          464 GNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGI  543 (569)
Q Consensus       464 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  543 (569)
                      +|+++ .+|..++..+.|..||.++|.+. .+|..++.+.+|+.|.+.+|++. .+|+++..++ |..||+++|+++ .+
T Consensus       152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~i  226 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YL  226 (722)
T ss_pred             cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ec
Confidence            77777 67777777777777777777776 45666777777777777777776 4455556544 777777777777 57


Q ss_pred             CcCccCCCCCCeEeCcCCcCc
Q 047977          544 PAELGNLTRLGVLSLDSNELT  564 (569)
Q Consensus       544 ~~~l~~l~~L~~L~l~~n~~~  564 (569)
                      |..|.+|..|++|-|.+||+.
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             chhhhhhhhheeeeeccCCCC
Confidence            777777777777777777775

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.17  E-value=1.6e-12  Score=116.60  Aligned_cols=91  Identities=25%  Similarity=0.301  Sum_probs=53.2

Q ss_pred             CccCCCCCCEEeCCCCcCcc----cCCccccCCCCCcEEEccCCc---cccCcc-------hhccCCCCCCEEECCCCCC
Q 047977           15 AIGTLSNLTFLDLNNNLFEG----SIPSEMGDLSELQYLSVYNNS---LNGAFP-------FQLSNLRKVRYLDLGGNFL   80 (569)
Q Consensus        15 ~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~---~~~~~~-------~~l~~l~~L~~L~l~~~~~   80 (569)
                      .+..+..++.+++++|.+..    .+.+.+.+.++|+..++++--   ....+|       .++..+++|++|+||+|.+
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            34556677788888877653    234445566777777776531   111222       3355666777777777766


Q ss_pred             CCCCCccC----CCCCCCcEEEccccccc
Q 047977           81 ETPDWSKF----SNMPSLTHLSLCYNELT  105 (569)
Q Consensus        81 ~~~~~~~~----~~~~~L~~L~l~~~~~~  105 (569)
                      ....+..|    +.+..|++|.+.+|.+.
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            55443332    34566666666666554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.13  E-value=3.8e-11  Score=101.16  Aligned_cols=122  Identities=20%  Similarity=0.184  Sum_probs=39.7

Q ss_pred             CCceEEcccCcCccccChhhh-CCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeC
Q 047977          432 SLINVSFSNNSFSGELPYELC-SGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRL  510 (569)
Q Consensus       432 ~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  510 (569)
                      .++.|+|++|.+.. + +.+. .+.+|+.|++++|.++ .+ +.+..++.|++|++++|.++...+.....+|+|++|++
T Consensus        20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             cccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            56777777777652 2 2333 3567777777777776 22 24666777777777777776433322235677777777


Q ss_pred             cCCcccccC-CcCcccCCCCCEEECCCCcceecCC---cCccCCCCCCeEe
Q 047977          511 SGNHFIGEI-SPDWGECRNLSNLQLDRNKISGGIP---AELGNLTRLGVLS  557 (569)
Q Consensus       511 ~~~~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~  557 (569)
                      ++|++.+.. -..+..+++|+.|++.+|+++...-   ..+..+|+|+.||
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            777765321 1235667777777777777763210   1134567777665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.09  E-value=1.5e-10  Score=114.86  Aligned_cols=199  Identities=32%  Similarity=0.471  Sum_probs=126.5

Q ss_pred             CEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCC-CCCEEEccCCcccccCCccccCCCCCCEEEccC
Q 047977          337 EKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMA-SLVAFDVNTNQLHGELPENISRLVNLNKFSVFT  415 (569)
Q Consensus       337 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~  415 (569)
                      ..+....+.+. .....+...+.++.+++.++.++ .++....... +|+.+++++|.+. .++..+..++.|+.|++++
T Consensus        96 ~~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          96 PSLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             ceeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            35666666653 22223444577888888888887 4444555553 7888888888887 4445667778888888888


Q ss_pred             CcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccch
Q 047977          416 NNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNI  495 (569)
Q Consensus       416 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  495 (569)
                      |+++.. +...... +.|+.|++++|.+. .+|........|+++.+++|... ..+..+.++.++..+.+.+|.+.. .
T Consensus       173 N~l~~l-~~~~~~~-~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~  247 (394)
T COG4886         173 NDLSDL-PKLLSNL-SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-L  247 (394)
T ss_pred             chhhhh-hhhhhhh-hhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-c
Confidence            877632 2222222 37777777777776 45544444555777777777543 355556666777777777776653 2


Q ss_pred             hhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCc
Q 047977          496 TRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPA  545 (569)
Q Consensus       496 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~  545 (569)
                      +..++.+++++.|++++|.+....+  ++.+..++.|++++|.++...+.
T Consensus       248 ~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         248 PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence            4556667777777777777664422  66777777777777776654443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.07  E-value=8.4e-11  Score=124.37  Aligned_cols=129  Identities=25%  Similarity=0.264  Sum_probs=82.0

Q ss_pred             CCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCc--cccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEE
Q 047977           20 SNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNS--LNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHL   97 (569)
Q Consensus        20 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L   97 (569)
                      ...|.+.+.++.+. ..+.. ..++.|++|-+.++.  +.......|..++.|++||+++|.-....+..++.+.+||+|
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            45566666666555 22322 234567777777664  443444446677777777777766555666667777777777


Q ss_pred             EcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCc
Q 047977           98 SLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQ  152 (569)
Q Consensus        98 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  152 (569)
                      +++++.+. .+|..+++++.|.+|++..+.....+ .++...+++||+|.+....
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccc
Confidence            77777777 67777777777777777766543233 3444557777777765543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.07  E-value=3.6e-11  Score=105.56  Aligned_cols=132  Identities=18%  Similarity=0.193  Sum_probs=82.7

Q ss_pred             cCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCc
Q 047977          403 SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLN  482 (569)
Q Consensus       403 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  482 (569)
                      .....|+++++++|.++ .+.+...-. |.++.|+++.|.+. .+ ..+..+++|+.||+++|.++ .....-..+-+.+
T Consensus       281 dTWq~LtelDLS~N~I~-~iDESvKL~-Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDESVKLA-PKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK  355 (490)
T ss_pred             chHhhhhhccccccchh-hhhhhhhhc-cceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence            33455666666666665 333333333 37777777777764 22 23666777777777777776 3333334566677


Q ss_pred             EEEccCCccccchhhhhcCCCCCcEEeCcCCcccccC-CcCcccCCCCCEEECCCCccee
Q 047977          483 RVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEI-SPDWGECRNLSNLQLDRNKISG  541 (569)
Q Consensus       483 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~n~~~~  541 (569)
                      .|.+++|.+.  ....++.+.+|..||+++|.+.... -..++++|.|+.|.+.+|++.+
T Consensus       356 tL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  356 TLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            7777777765  2344667777778888887765321 2347777888888888877763

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=1.4e-10  Score=97.76  Aligned_cols=129  Identities=22%  Similarity=0.222  Sum_probs=36.6

Q ss_pred             ccCCCCCCEEeCCCCcCcccCCcccc-CCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCC
Q 047977           16 IGTLSNLTFLDLNNNLFEGSIPSEMG-DLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSL   94 (569)
Q Consensus        16 ~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L   94 (569)
                      +.++.+++.|+++++.|..+  +.++ .+.+|+.|++++|.+++.  ..+..+++|++|++++|.+..+.......+++|
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL   90 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence            34455667777777766632  2333 456677777777766633  235566667777777666665432111345666


Q ss_pred             cEEEccccccccc-CCccccCCCCCCEEEcccCccccCC--chhhhhcCCCCcEEec
Q 047977           95 THLSLCYNELTLE-FPSFILTCRNLTYLDLSLNKLSGLI--PERLFTNLGKLEYLNL  148 (569)
Q Consensus        95 ~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l  148 (569)
                      ++|++++|.+... ....+..+++|+.|++.+|+++..-  -..++..+|+|+.||-
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            6666666666521 1234455666666666666654221  1123445566666554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=2.5e-11  Score=112.13  Aligned_cols=210  Identities=17%  Similarity=0.121  Sum_probs=133.3

Q ss_pred             ccCCCCCcEEecccccccccCC-ccccCCCCCCEEEccCCccccc--cCcccccCCCCCEEEcccCcccccCCcc-ccCC
Q 047977          306 IGLLTKLQYLFLYRNHFSGPIP-SEIGKLTSLEKLDLSGNQLSGT--IPPTLWNLTNLLSLQLFFNNLSGTIPPE-IGSM  381 (569)
Q Consensus       306 ~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~  381 (569)
                      -+++.+|+.+.+.++++..... .....|++++.|+++.|-+...  +......+|+|+.|+++.|.+..-.... -..+
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            4567889999999888763221 3567799999999999877533  3345678899999999999876322211 2256


Q ss_pred             CCCCEEEccCCccccc-CCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCcccc-ChhhhCCCCCcE
Q 047977          382 ASLVAFDVNTNQLHGE-LPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGEL-PYELCSGFALEE  459 (569)
Q Consensus       382 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~  459 (569)
                      +.++.|.++.|.++.. +...+..+|+++.|.+.+|........... .+..|+.|+|++|.+.+.. ......++.|+.
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~-i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK-ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh-hhhHHhhccccCCcccccccccccccccchhh
Confidence            7899999999988742 334456788888888888842211111111 2227778888887765332 124455677777


Q ss_pred             EEccCCcceee-CCcc-----ccCCCCCcEEEccCCccccc-hhhhhcCCCCCcEEeCcCCccc
Q 047977          460 LTVNGNNFTGS-LPAC-----MRNCSNLNRVRFDGNQFTGN-ITRAFGVHPRLDFIRLSGNHFI  516 (569)
Q Consensus       460 L~l~~~~~~~~-~~~~-----l~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~  516 (569)
                      |.++.|++... .|.+     ...+++|++|+++.|++..- ....+..+++|+.|.+-.|.+.
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            77777776532 1222     34567777777777776421 1223445566666666666654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.03  E-value=7e-12  Score=119.45  Aligned_cols=193  Identities=26%  Similarity=0.417  Sum_probs=128.6

Q ss_pred             CCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 047977          335 SLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVF  414 (569)
Q Consensus       335 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~  414 (569)
                      --...+++.|++. .++..++.+-.|+.+.++.|.+. .++..+..+..|+.++++.|++. .+|..+.. --|+.+.++
T Consensus        76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-lpLkvli~s  151 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-LPLKVLIVS  151 (722)
T ss_pred             chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc-CcceeEEEe
Confidence            3345677777776 66667777777777777777766 66777777778888888888777 55544443 346777777


Q ss_pred             CCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccc
Q 047977          415 TNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGN  494 (569)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  494 (569)
                      +|+++ ..|+..... +.|..|+.+.|.+- .+|..+..+.+|+.|.+..|.+. .+|..+.. -.|..||+++|+++ .
T Consensus       152 NNkl~-~lp~~ig~~-~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~  225 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLL-PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-Y  225 (722)
T ss_pred             cCccc-cCCcccccc-hhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-e
Confidence            77766 556666533 37777777777765 56666777777777777777776 56666663 33777777777776 5


Q ss_pred             hhhhhcCCCCCcEEeCcCCcccccCCcC---cccCCCCCEEECCCCc
Q 047977          495 ITRAFGVHPRLDFIRLSGNHFIGEISPD---WGECRNLSNLQLDRNK  538 (569)
Q Consensus       495 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~---l~~~~~L~~L~l~~n~  538 (569)
                      +|-.|..|+.|++|-|.+|++. ..|..   -+..+--++|++.-|+
T Consensus       226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            6667777777777777777765 32322   2444555666666664

>PLN03150 hypothetical protein; Provisional

Probab=99.02  E-value=4.9e-10  Score=116.23  Aligned_cols=108  Identities=19%  Similarity=0.418  Sum_probs=72.8

Q ss_pred             CceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcC
Q 047977          433 LINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSG  512 (569)
Q Consensus       433 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  512 (569)
                      ++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|+.++.+++|++|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            55667777777666666666677777777777777666666667777777777777777666676677777777777777


Q ss_pred             CcccccCCcCcccC-CCCCEEECCCCcce
Q 047977          513 NHFIGEISPDWGEC-RNLSNLQLDRNKIS  540 (569)
Q Consensus       513 ~~~~~~~~~~l~~~-~~L~~L~l~~n~~~  540 (569)
                      |.+.+.+|..++.. .++..+++.+|...
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccc
Confidence            77666666665542 35556666666533

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.00  E-value=6.7e-10  Score=110.22  Aligned_cols=200  Identities=31%  Similarity=0.426  Sum_probs=155.2

Q ss_pred             cEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCC-CCCEEEcccCcccccCCccccCCCCCCEEEccC
Q 047977          313 QYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLT-NLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNT  391 (569)
Q Consensus       313 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  391 (569)
                      ..+....+.+... ...+..++.++.+++.++.++ .++....... +|+.+++++|.+. .++..+..++.|+.|+++.
T Consensus        96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             ceeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            4677777776422 234555678999999999998 4444555553 8999999999987 4446788899999999999


Q ss_pred             CcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeC
Q 047977          392 NQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSL  471 (569)
Q Consensus       392 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  471 (569)
                      |++. .++......+.|+.+.+++|++. .+|..... +..|+++.+++|+.. ..+..+..+.++..+.+.+|++. ..
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~  247 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL  247 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence            9998 55555557899999999999988 44443322 226999999999643 45567778888999999999887 44


Q ss_pred             CccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcC
Q 047977          472 PACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPD  522 (569)
Q Consensus       472 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  522 (569)
                      +..+..+++++.|++++|.++....  ++...++++|+++++.+....+..
T Consensus       248 ~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         248 PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence            6778888999999999999985444  889999999999999987555544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.96  E-value=5.2e-10  Score=77.32  Aligned_cols=61  Identities=30%  Similarity=0.450  Sum_probs=37.8

Q ss_pred             CCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcC
Q 047977          503 PRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNEL  563 (569)
Q Consensus       503 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  563 (569)
                      |+|++|++++|++....+..|+.+++|+.|++++|.++...+++|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4566666666666544445566666666666666666666666666666666666666654

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.95  E-value=3.8e-10  Score=119.48  Aligned_cols=107  Identities=24%  Similarity=0.250  Sum_probs=64.0

Q ss_pred             CCCCEEeCCCCc--CcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEE
Q 047977           20 SNLTFLDLNNNL--FEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHL   97 (569)
Q Consensus        20 ~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L   97 (569)
                      +.|++|-+.++.  +..+..+.|..++.|++|++++|.-.+.+|..++.+-+||+|+++++.+... +..++.+.+|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~L-P~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHL-PSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcccc-chHHHHHHhhhee
Confidence            356666666664  3334444466666666666666655556666666666666666666666533 3455666666666


Q ss_pred             EcccccccccCCccccCCCCCCEEEcccCc
Q 047977           98 SLCYNELTLEFPSFILTCRNLTYLDLSLNK  127 (569)
Q Consensus        98 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  127 (569)
                      ++..+......+.....+++|++|.+....
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccc
Confidence            666665443444445556666666665543

>PLN03150 hypothetical protein; Provisional

Probab=98.91  E-value=3.1e-09  Score=110.25  Aligned_cols=108  Identities=27%  Similarity=0.478  Sum_probs=78.5

Q ss_pred             CcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCC
Q 047977          457 LEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDR  536 (569)
Q Consensus       457 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  536 (569)
                      ++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            56777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CcceecCCcCccCC-CCCCeEeCcCCcCc
Q 047977          537 NKISGGIPAELGNL-TRLGVLSLDSNELT  564 (569)
Q Consensus       537 n~~~~~~~~~l~~l-~~L~~L~l~~n~~~  564 (569)
                      |.+++.+|..+... .++..+++.+|+..
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccc
Confidence            77777777766543 45666777776643

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.91  E-value=1e-09  Score=75.87  Aligned_cols=59  Identities=25%  Similarity=0.375  Sum_probs=32.8

Q ss_pred             CCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCc
Q 047977          480 NLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNK  538 (569)
Q Consensus       480 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~  538 (569)
                      +|++|++++|.+....+.+|..+++|++|++++|.+....+..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555554444555555555555555555554544555555555555555554

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.79  E-value=7.9e-10  Score=109.67  Aligned_cols=245  Identities=24%  Similarity=0.235  Sum_probs=116.7

Q ss_pred             CCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEE
Q 047977          285 WTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQ  364 (569)
Q Consensus       285 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  364 (569)
                      +..++.+.++.+.+.. ....+..+.++..+++.+|.+... ...+..+++|++|++++|.+++.  ..+..++.|+.|+
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence            3445555555555543 112244556666666666666522 22245566666666666666533  2344455566666


Q ss_pred             cccCcccccCCccccCCCCCCEEEccCCcccccCCcc-ccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcC
Q 047977          365 LFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPEN-ISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSF  443 (569)
Q Consensus       365 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  443 (569)
                      +.+|.+...  ..+..++.|+.+++++|.+...-+ . ...+.                         +++.+.+.+|.+
T Consensus       147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~-------------------------~l~~l~l~~n~i  198 (414)
T KOG0531|consen  147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEN-DELSELI-------------------------SLEELDLGGNSI  198 (414)
T ss_pred             eccCcchhc--cCCccchhhhcccCCcchhhhhhh-hhhhhcc-------------------------chHHHhccCCch
Confidence            666665422  123334555555555555542211 1 23344                         444444444444


Q ss_pred             ccccChhhhCCCCCcEEEccCCcceeeCCccccCCC--CCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCc
Q 047977          444 SGELPYELCSGFALEELTVNGNNFTGSLPACMRNCS--NLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISP  521 (569)
Q Consensus       444 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  521 (569)
                      ...  ..+..+..+..+++..|.++...+  +..+.  .|+.+++++|++... +..+..++.+..|+++++.+...  .
T Consensus       199 ~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~  271 (414)
T KOG0531|consen  199 REI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--E  271 (414)
T ss_pred             hcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--c
Confidence            211  112222233333455554442111  12122  256666666665522 13445566666666666665433  3


Q ss_pred             CcccCCCCCEEECCCCccee---cCCcC-ccCCCCCCeEeCcCCcCcccCC
Q 047977          522 DWGECRNLSNLQLDRNKISG---GIPAE-LGNLTRLGVLSLDSNELTGKNS  568 (569)
Q Consensus       522 ~l~~~~~L~~L~l~~n~~~~---~~~~~-l~~l~~L~~L~l~~n~~~~~~~  568 (569)
                      .+...+.+..+....+.+..   ..... ....+.++...+.+|++....+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  272 GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            34555555555555555441   11111 3445566666666666665543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.64  E-value=2.4e-09  Score=106.20  Aligned_cols=197  Identities=24%  Similarity=0.263  Sum_probs=122.9

Q ss_pred             cccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCC
Q 047977          354 LWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSL  433 (569)
Q Consensus       354 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L  433 (569)
                      ++.+++|..+++.+|.+... ...+..+++|+.+++++|.+...  ..+..++.|+.|++.+|.++...  .+..+ +.|
T Consensus        91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~--~~~~l-~~L  164 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDIS--GLESL-KSL  164 (414)
T ss_pred             cccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhcc--CCccc-hhh
Confidence            44445555555555554421 11144455566666666555532  23444455666666666555221  12122 277


Q ss_pred             ceEEcccCcCccccC-hhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCC--CcEEeC
Q 047977          434 INVSFSNNSFSGELP-YELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPR--LDFIRL  510 (569)
Q Consensus       434 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l  510 (569)
                      +.+++++|++.+.-+ . ...+.+++.+++.+|.+..  ...+..+..+..+++..|.++...+  +..+..  |+.+++
T Consensus       165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l  239 (414)
T KOG0531|consen  165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYL  239 (414)
T ss_pred             hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhc
Confidence            777777777653322 1 4677899999999998872  3344555566666888888874332  333343  899999


Q ss_pred             cCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCc
Q 047977          511 SGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT  564 (569)
Q Consensus       511 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  564 (569)
                      ++|++. ..+.++..+..++.|++.+|++..  ...+...+.+..+....|++.
T Consensus       240 ~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  240 SGNRIS-RSPEGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             ccCccc-cccccccccccccccchhhccccc--cccccccchHHHhccCcchhc
Confidence            999987 334678888999999999999883  344666777777888877765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=1.5e-09  Score=95.41  Aligned_cols=57  Identities=26%  Similarity=0.289  Sum_probs=24.7

Q ss_pred             CcEEEccCCcccc-CcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccc
Q 047977           46 LQYLSVYNNSLNG-AFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYN  102 (569)
Q Consensus        46 L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  102 (569)
                      |+++++++..++. .+...+..|.+|+.|.+.++.+.+.....++.-..|+.++++++
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~  244 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC  244 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence            4444554444431 12222344444444444444444433333444444444444444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.45  E-value=2.2e-09  Score=105.68  Aligned_cols=125  Identities=26%  Similarity=0.219  Sum_probs=60.8

Q ss_pred             CceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcC
Q 047977          433 LINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSG  512 (569)
Q Consensus       433 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  512 (569)
                      |...+.+.|.+. .+..++.-++.++.|+|++|++.+. . .+..|+.|++|||++|.+....-.....+. |+.|.+++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            334444444443 3333444455555555555555522 1 445555556666655555432222222233 55555555


Q ss_pred             CcccccCCcCcccCCCCCEEECCCCcceec-CCcCccCCCCCCeEeCcCCcC
Q 047977          513 NHFIGEISPDWGECRNLSNLQLDRNKISGG-IPAELGNLTRLGVLSLDSNEL  563 (569)
Q Consensus       513 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~  563 (569)
                      |.++..  .++.++.+|+.||+++|-+.+. -..-+..+..|+.|++.|||+
T Consensus       242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            555433  4455555566666665554421 111134455555666666654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=2e-09  Score=94.73  Aligned_cols=181  Identities=20%  Similarity=0.170  Sum_probs=106.7

Q ss_pred             CCCcEEeccCCcccc-cCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceec--CCccccCCCCCCE
Q 047977          141 GKLEYLNLTDNQFQG-KLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQ--IPSSLGQLKNLQH  217 (569)
Q Consensus       141 ~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~  217 (569)
                      +.|++++++...++. .....++.|.+|+.|.+.+.++.+.....++.-.+|+.++++.|.-...  ..-.+..|..|.+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            347777777666542 2223456677777777777776655555566677777777776652211  1122456777777


Q ss_pred             EEcccCCCCcCCC-cCC-cCCCCCCEEEcccccce---eccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEE
Q 047977          218 LDLRMNALNSTIP-PEL-GLCTNLSFLALAMNQLS---GGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQ  292 (569)
Q Consensus       218 L~l~~~~~~~~~~-~~~-~~~~~L~~l~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  292 (569)
                      |++++|....... ..+ .--++|+.++++++.-.   .....-...+|+|.+|++++|-.........+..++-|+++.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            8887776543211 111 12356777777766421   111112346788888888887543333444466788888888


Q ss_pred             ccCCcce-eeCCccccCCCCCcEEeccccc
Q 047977          293 IQNNSFM-GNIPPEIGLLTKLQYLFLYRNH  321 (569)
Q Consensus       293 l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~  321 (569)
                      ++.|... ......+...|+|.+|++.+|-
T Consensus       345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  345 LSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            8887532 1111235667888888888764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=1.1e-07  Score=83.89  Aligned_cols=183  Identities=20%  Similarity=0.168  Sum_probs=79.8

Q ss_pred             CCCCcEEeccCCccccc--CCcCCCCCCCCCEEEccCCccccCCCcCc-CCCCCCcEEEcccCcce-ecCCccccCCCCC
Q 047977          140 LGKLEYLNLTDNQFQGK--LSPNVSKLSNLTVLRLATNKFSGPIPGDI-GLMSNIQLVELFNNSFT-GQIPSSLGQLKNL  215 (569)
Q Consensus       140 ~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L  215 (569)
                      ++.++.+++.+|.+..+  +...+.++|.|+.|+++.|.+..... .+ ....+|+++-+.+..+. ......+..+|.+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            34444455555444321  11223444555555555544432211 11 23344445444444332 0112234455666


Q ss_pred             CEEEcccCCCCc--CCCcCC-cCCCCCCEEEcccccceecc--CccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcE
Q 047977          216 QHLDLRMNALNS--TIPPEL-GLCTNLSFLALAMNQLSGGL--PLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELES  290 (569)
Q Consensus       216 ~~L~l~~~~~~~--~~~~~~-~~~~~L~~l~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  290 (569)
                      ++++++.|....  ...... ...+.++++....|....+.  ..--.-+|++..+.+..|.+........+..+|.+.-
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            666666552110  000111 11134444544444332110  0111234566666666666554444444555566666


Q ss_pred             EEccCCcceeeC-CccccCCCCCcEEeccccccc
Q 047977          291 LQIQNNSFMGNI-PPEIGLLTKLQYLFLYRNHFS  323 (569)
Q Consensus       291 L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~  323 (569)
                      |++..+++.+.. ..++..++.|+.|.++++++.
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            666665554321 133455666666666666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=6.2e-08  Score=85.52  Aligned_cols=228  Identities=17%  Similarity=0.121  Sum_probs=133.1

Q ss_pred             CCCEEEccCCccccccC-ccc-ccCCCCCEEEcccCccccc--CCccccCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 047977          335 SLEKLDLSGNQLSGTIP-PTL-WNLTNLLSLQLFFNNLSGT--IPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNK  410 (569)
Q Consensus       335 ~L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  410 (569)
                      .++.+.+.++.+..... ..| ..++.++++++.+|.++..  +...+.++|.|+.|+++.|.+...+...-....+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            44455555555542211 111 2456677777777776532  2234456777777777777776433222134567777


Q ss_pred             EEccCCcccccCCchhhccCCCCceEEcccCcCccc--cChhh-hCCCCCcEEEccCCccee--eCCccccCCCCCcEEE
Q 047977          411 FSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGE--LPYEL-CSGFALEELTVNGNNFTG--SLPACMRNCSNLNRVR  485 (569)
Q Consensus       411 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~  485 (569)
                      +-+.+..+.......+....|.++.|+++.|.+...  ..... ..-+.+++|+..+|.+..  ..-.--.-+|++..+.
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~  205 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF  205 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence            777777665544444433334777777777732210  01111 122356666666664431  0011124568899999


Q ss_pred             ccCCccccc-hhhhhcCCCCCcEEeCcCCccccc-CCcCcccCCCCCEEECCCCcceecC----CcC--ccCCCCCCeEe
Q 047977          486 FDGNQFTGN-ITRAFGVHPRLDFIRLSGNHFIGE-ISPDWGECRNLSNLQLDRNKISGGI----PAE--LGNLTRLGVLS  557 (569)
Q Consensus       486 l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~----~~~--l~~l~~L~~L~  557 (569)
                      +..|++... ....+..+|.+..|.++.+.+.+- ....+..+++|..|.++.+++....    +..  ++++++++.|+
T Consensus       206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            999988543 345567788888999999987522 1234888999999999999887422    111  36788888776


Q ss_pred             CcCCcCc
Q 047977          558 LDSNELT  564 (569)
Q Consensus       558 l~~n~~~  564 (569)
                      =+  +++
T Consensus       286 Gs--kIs  290 (418)
T KOG2982|consen  286 GS--KIS  290 (418)
T ss_pred             Cc--ccc
Confidence            33  544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.31  E-value=4.4e-08  Score=96.77  Aligned_cols=175  Identities=18%  Similarity=0.181  Sum_probs=121.5

Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCc--Cc-------cccChhh
Q 047977          381 MASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNS--FS-------GELPYEL  451 (569)
Q Consensus       381 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~-------~~~~~~~  451 (569)
                      ...++.+....-.-++  |-.+..+.+|+.|.+.+|.+..  ...+..+...|+.|.+.+--  +.       +.+..+.
T Consensus        86 t~~lkl~~~pa~~pt~--pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~  161 (1096)
T KOG1859|consen   86 TKVLKLLPSPARDPTE--PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP  161 (1096)
T ss_pred             heeeeecccCCCCCCC--CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch
Confidence            3344444444433332  4456678899999999988763  12222233355555444321  10       1111111


Q ss_pred             hCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCE
Q 047977          452 CSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSN  531 (569)
Q Consensus       452 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  531 (569)
                       ....|...+.+.|.+. .+...++-++.|+.|+|++|++....  .+..++.|++|||++|.+....--...++. |+.
T Consensus       162 -~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~  236 (1096)
T KOG1859|consen  162 -VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQL  236 (1096)
T ss_pred             -hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-hee
Confidence             1135777788889888 67778888999999999999998544  688999999999999998744333456666 999


Q ss_pred             EECCCCcceecCCcCccCCCCCCeEeCcCCcCccc
Q 047977          532 LQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGK  566 (569)
Q Consensus       532 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  566 (569)
                      |++++|.++  ...++.++.+|+.||+++|=+++.
T Consensus       237 L~lrnN~l~--tL~gie~LksL~~LDlsyNll~~h  269 (1096)
T KOG1859|consen  237 LNLRNNALT--TLRGIENLKSLYGLDLSYNLLSEH  269 (1096)
T ss_pred             eeecccHHH--hhhhHHhhhhhhccchhHhhhhcc
Confidence            999999999  456789999999999999988775

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.26  E-value=1.2e-08  Score=94.16  Aligned_cols=84  Identities=23%  Similarity=0.126  Sum_probs=38.8

Q ss_pred             CCcEEEccccccccc--CCccccCCCCCCEEEcccCc-cccCCchhhhhcCCCCcEEeccCCc-ccccCCc-CCCCCCCC
Q 047977           93 SLTHLSLCYNELTLE--FPSFILTCRNLTYLDLSLNK-LSGLIPERLFTNLGKLEYLNLTDNQ-FQGKLSP-NVSKLSNL  167 (569)
Q Consensus        93 ~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~-~l~~~~~L  167 (569)
                      .|+.|.+.++.-...  +-.....+|++++|.+.++. +++..-..+...+++++++++..|. ++....+ ....+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            455666655543311  11223455666666665554 3322233334455666666665532 2211111 12345566


Q ss_pred             CEEEccCCc
Q 047977          168 TVLRLATNK  176 (569)
Q Consensus       168 ~~L~l~~~~  176 (569)
                      +++++++|.
T Consensus       219 ~~lNlSwc~  227 (483)
T KOG4341|consen  219 KYLNLSWCP  227 (483)
T ss_pred             HHhhhccCc
Confidence            666666653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.25  E-value=1.1e-07  Score=82.78  Aligned_cols=209  Identities=17%  Similarity=0.121  Sum_probs=123.0

Q ss_pred             CCCCCCEEeCCCCcCcccCCcc----ccCCCCCcEEEccCCccc---c-------CcchhccCCCCCCEEECCCCCCCCC
Q 047977           18 TLSNLTFLDLNNNLFEGSIPSE----MGDLSELQYLSVYNNSLN---G-------AFPFQLSNLRKVRYLDLGGNFLETP   83 (569)
Q Consensus        18 ~~~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~---~-------~~~~~l~~l~~L~~L~l~~~~~~~~   83 (569)
                      .+..+..+++|+|.+......+    +.+-.+|+..+++.--..   .       .+..++..||+|+.+++|.|.+...
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            3567777888888776433333    344567777777653221   1       1233466778888888888766543


Q ss_pred             CCc----cCCCCCCCcEEEcccccccccCC-------------ccccCCCCCCEEEcccCccccC---CchhhhhcCCCC
Q 047977           84 DWS----KFSNMPSLTHLSLCYNELTLEFP-------------SFILTCRNLTYLDLSLNKLSGL---IPERLFTNLGKL  143 (569)
Q Consensus        84 ~~~----~~~~~~~L~~L~l~~~~~~~~~~-------------~~l~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~~L  143 (569)
                      .+.    .++.-+.|.||.+++|.+.-...             .....-|.|+++...+|++...   .....+..-..|
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l  187 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL  187 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence            322    24556778888888887651111             1123457888888888876421   112223344577


Q ss_pred             cEEeccCCcccccCC-----cCCCCCCCCCEEEccCCccccCCCc----CcCCCCCCcEEEcccCcceecCCcc----c-
Q 047977          144 EYLNLTDNQFQGKLS-----PNVSKLSNLTVLRLATNKFSGPIPG----DIGLMSNIQLVELFNNSFTGQIPSS----L-  209 (569)
Q Consensus       144 ~~L~l~~~~~~~~~~-----~~l~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~----l-  209 (569)
                      +++.+..|.+.....     ..+..+.+|+.|++..|.++.....    .+...+.|+.|.+..|-+.......    + 
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~  267 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN  267 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence            888887777642211     2335677888888888776543322    2345566788888887665322111    1 


Q ss_pred             -cCCCCCCEEEcccCCCC
Q 047977          210 -GQLKNLQHLDLRMNALN  226 (569)
Q Consensus       210 -~~l~~L~~L~l~~~~~~  226 (569)
                       ...|+|..|....|.+.
T Consensus       268 e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         268 EKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             hhcCCCccccccchhhhc
Confidence             13567777777776543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.23  E-value=3.3e-06  Score=69.01  Aligned_cols=127  Identities=22%  Similarity=0.224  Sum_probs=64.7

Q ss_pred             cCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCC
Q 047977           11 PIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSN   90 (569)
Q Consensus        11 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~   90 (569)
                      +...+|..+++|+.+.+.. .+..+...+|.++++|+.+.+.++ +......+|.+++.++.+.+.+ .+.......|..
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence            4467788888888888875 455577777888888888888764 5544455677777788888865 455555566777


Q ss_pred             CCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCc
Q 047977           91 MPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLE  144 (569)
Q Consensus        91 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  144 (569)
                      +++|+.+.+..+ +.......+..+ +|+.+.+.. .+. .++...|.++++|+
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKLK  129 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG------
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence            777777777654 433444456665 777777665 222 45556666666653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.13  E-value=2.8e-08  Score=91.83  Aligned_cols=134  Identities=17%  Similarity=0.179  Sum_probs=62.5

Q ss_pred             CCCCCEEEccCCcc-cccCCchhhccCCCCceEEcccCc-CccccChhhhC-CCCCcEEEccCCcceee--CCccccCCC
Q 047977          405 LVNLNKFSVFTNNF-SGSIPGDFGKFSPSLINVSFSNNS-FSGELPYELCS-GFALEELTVNGNNFTGS--LPACMRNCS  479 (569)
Q Consensus       405 l~~L~~l~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~-~~~L~~L~l~~~~~~~~--~~~~l~~~~  479 (569)
                      +..|+.+..+++.. +......+..-.++|+.+-++.|+ +++.-...+.. ++.|+.+++.+|.....  +..--.+|+
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            44445555544422 111222333333456666666654 33222222322 45666666666643311  111123566


Q ss_pred             CCcEEEccCCcccc-ch----hhhhcCCCCCcEEeCcCCccc-ccCCcCcccCCCCCEEECCCCc
Q 047977          480 NLNRVRFDGNQFTG-NI----TRAFGVHPRLDFIRLSGNHFI-GEISPDWGECRNLSNLQLDRNK  538 (569)
Q Consensus       480 ~L~~L~l~~~~~~~-~~----~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~  538 (569)
                      .|+.+.+++|.... ..    ...-..+..|+.+-+.+|+.+ +..-+-+..+++|+.+++.+|+
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            66666666665421 11    111123456666666666532 2223335666666666666664

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.12  E-value=1.6e-05  Score=75.98  Aligned_cols=54  Identities=13%  Similarity=0.216  Sum_probs=23.1

Q ss_pred             CCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccC
Q 047977          309 LTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFN  368 (569)
Q Consensus       309 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  368 (569)
                      ++.++.|++++|.++ .+| .+  -.+|++|.+++|.-....+..+  .++|+.|++++|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            345555555555444 333 11  1245555555543322333222  134444444444

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.07  E-value=1.6e-05  Score=75.88  Aligned_cols=136  Identities=15%  Similarity=0.168  Sum_probs=77.1

Q ss_pred             cccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCC
Q 047977          354 LWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSL  433 (569)
Q Consensus       354 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L  433 (569)
                      +..+..++.|++++|.++ .++   .-.++|+.|.+++|.....+|..+.  .+|+.|.+++|..-       ..+++.|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L-------~sLP~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEI-------SGLPESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccc-------ccccccc
Confidence            445688888888888766 334   1234688888887655545665442  57778888777211       1234567


Q ss_pred             ceEEcccCcCc--cccChhhhCCCCCcEEEccCCcce--eeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEe
Q 047977          434 INVSFSNNSFS--GELPYELCSGFALEELTVNGNNFT--GSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIR  509 (569)
Q Consensus       434 ~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  509 (569)
                      +.|+++.+...  +.+|      ++|+.|.+.++...  ...+..+.  ++|++|++++|... ..|..+  ..+|++|+
T Consensus       115 e~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~L--P~SLk~L~  183 (426)
T PRK15386        115 RSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKL--PESLQSIT  183 (426)
T ss_pred             ceEEeCCCCCcccccCc------chHhheeccccccccccccccccC--CcccEEEecCCCcc-cCcccc--cccCcEEE
Confidence            77777654432  1122      35666666443211  01111111  56777777777655 233332  35777777


Q ss_pred             CcCC
Q 047977          510 LSGN  513 (569)
Q Consensus       510 l~~~  513 (569)
                      ++.+
T Consensus       184 ls~n  187 (426)
T PRK15386        184 LHIE  187 (426)
T ss_pred             eccc
Confidence            7665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.04  E-value=2e-06  Score=75.27  Aligned_cols=235  Identities=22%  Similarity=0.187  Sum_probs=149.2

Q ss_pred             ccCCCCCCEEEccCCccccccCccc----ccCCCCCEEEcccCccc---cc-------CCccccCCCCCCEEEccCCccc
Q 047977          330 IGKLTSLEKLDLSGNQLSGTIPPTL----WNLTNLLSLQLFFNNLS---GT-------IPPEIGSMASLVAFDVNTNQLH  395 (569)
Q Consensus       330 l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~---~~-------~~~~~~~~~~L~~L~l~~~~~~  395 (569)
                      +.....+.++++++|.+......++    .+-.+|+..++++--..   ..       ....+..||.|+.+++++|.+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            3446788899999998875544444    34467777777653211   11       2234567899999999998776


Q ss_pred             ccCCc----cccCCCCCCEEEccCCcccccCCchhh------------ccCCCCceEEcccCcCccccC----hhhhCCC
Q 047977          396 GELPE----NISRLVNLNKFSVFTNNFSGSIPGDFG------------KFSPSLINVSFSNNSFSGELP----YELCSGF  455 (569)
Q Consensus       396 ~~~~~----~~~~l~~L~~l~l~~~~~~~~~~~~~~------------~~~~~L~~L~l~~~~~~~~~~----~~~~~~~  455 (569)
                      ...|.    .+..-+.|+.|.+.+|.+-...-..+.            .-.|.|++..+..|++...-.    ..+..-.
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~  185 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE  185 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence            54443    456678888899988876533222111            123588888888888742111    1222225


Q ss_pred             CCcEEEccCCcceee-----CCccccCCCCCcEEEccCCcccc----chhhhhcCCCCCcEEeCcCCcccccCCcCc---
Q 047977          456 ALEELTVNGNNFTGS-----LPACMRNCSNLNRVRFDGNQFTG----NITRAFGVHPRLDFIRLSGNHFIGEISPDW---  523 (569)
Q Consensus       456 ~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l---  523 (569)
                      .|+++.+..|.|...     ....+..+.+|+.|||..|-++.    .+..++...+.|++|.+.+|-++......+   
T Consensus       186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~  265 (388)
T COG5238         186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR  265 (388)
T ss_pred             CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence            788888888876532     11234677889999998887754    233445566778889888887764433321   


Q ss_pred             ---ccCCCCCEEECCCCcceecC------CcCc-cCCCCCCeEeCcCCcCc
Q 047977          524 ---GECRNLSNLQLDRNKISGGI------PAEL-GNLTRLGVLSLDSNELT  564 (569)
Q Consensus       524 ---~~~~~L~~L~l~~n~~~~~~------~~~l-~~l~~L~~L~l~~n~~~  564 (569)
                         ...|+|..|...+|.+.+..      +... ..+|-|..|.++||+|+
T Consensus       266 f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         266 FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence               23678888888888766321      1111 34777777888888875

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.95  E-value=2e-05  Score=64.31  Aligned_cols=125  Identities=19%  Similarity=0.228  Sum_probs=59.1

Q ss_pred             CCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccccccccCCccccCC
Q 047977           36 IPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTC  115 (569)
Q Consensus        36 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l  115 (569)
                      ...+|.++++|+.+.+.. .+......+|.++++|+.+++.++ +..+...+|..+++++++.+.+ .+.......+..+
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence            346677777888888764 355455566777777888887764 6666666677777777777765 3332334455666


Q ss_pred             CCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCC
Q 047977          116 RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNL  167 (569)
Q Consensus       116 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  167 (569)
                      ++|+.+++..+ +. .++...|.++ .++.+.+.. .+.......|.++++|
T Consensus        81 ~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   81 TNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            77777776554 33 4444555665 666666654 2332333445555444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.88  E-value=2.2e-05  Score=65.85  Aligned_cols=105  Identities=17%  Similarity=0.164  Sum_probs=63.4

Q ss_pred             CCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccch-hhhhcCCCCCcEEeC
Q 047977          432 SLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNI-TRAFGVHPRLDFIRL  510 (569)
Q Consensus       432 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l  510 (569)
                      ....+++++|++...  ..+..++.|.+|.+.+|+|+...|.--.-+++|+.|.+.+|++.... ...+..||+|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            555677777766422  23555667777777777777555544445667777777777664321 233556777777777


Q ss_pred             cCCcccccCC---cCcccCCCCCEEECCCCc
Q 047977          511 SGNHFIGEIS---PDWGECRNLSNLQLDRNK  538 (569)
Q Consensus       511 ~~~~~~~~~~---~~l~~~~~L~~L~l~~n~  538 (569)
                      -+|++...--   -.+..+|+|+.||+++=.
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            7777652210   115566777777776543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.88  E-value=5.1e-07  Score=70.31  Aligned_cols=130  Identities=16%  Similarity=0.222  Sum_probs=76.2

Q ss_pred             CCceEEcccCcCcc--ccChhhhCCCCCcEEEccCCcceeeCCccc-cCCCCCcEEEccCCccccchhhhhcCCCCCcEE
Q 047977          432 SLINVSFSNNSFSG--ELPYELCSGFALEELTVNGNNFTGSLPACM-RNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFI  508 (569)
Q Consensus       432 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  508 (569)
                      .+..++|++|++..  ..+..+.+...|+..++++|.+. ..|+.| ..++..+.|++++|.+++ .|+.+..+|.|+.|
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSL  105 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhc
Confidence            44556667776541  12234455556666777777776 455444 345577777777777773 45457777777777


Q ss_pred             eCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCc-cCCCCCCeEeCcCCcCccc
Q 047977          509 RLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAEL-GNLTRLGVLSLDSNELTGK  566 (569)
Q Consensus       509 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~  566 (569)
                      +++.|++. ..|..+..+.++-.|+..+|.+-.+.-+.| ...+.|  .+++++|+.++
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al--~~lgnepl~~~  161 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPAL--IKLGNEPLGDE  161 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHH--HHhcCCccccc
Confidence            77777766 445555557777777777776653222211 122222  33366666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.86  E-value=1.9e-05  Score=49.57  Aligned_cols=36  Identities=28%  Similarity=0.445  Sum_probs=15.9

Q ss_pred             CCcEEEccCCccccchhhhhcCCCCCcEEeCcCCccc
Q 047977          480 NLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFI  516 (569)
Q Consensus       480 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  516 (569)
                      +|++|++++|.++. ++..++++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            34455555555442 2333445555555555555444

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.81  E-value=2e-05  Score=49.49  Aligned_cols=37  Identities=32%  Similarity=0.545  Sum_probs=22.8

Q ss_pred             CCcEEEccCCcceeeCCccccCCCCCcEEEccCCcccc
Q 047977          456 ALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTG  493 (569)
Q Consensus       456 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  493 (569)
                      +|++|++++|+++ .++..++++++|+.|++++|+++.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            5666666666666 455556667777777777776663

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.79  E-value=7.3e-06  Score=85.19  Aligned_cols=151  Identities=19%  Similarity=0.205  Sum_probs=101.9

Q ss_pred             CCCCCEEEccCCc-ccccCCchhhccCCCCceEEcccCcCcccc-ChhhhCCCCCcEEEccCCcceeeCCccccCCCCCc
Q 047977          405 LVNLNKFSVFTNN-FSGSIPGDFGKFSPSLINVSFSNNSFSGEL-PYELCSGFALEELTVNGNNFTGSLPACMRNCSNLN  482 (569)
Q Consensus       405 l~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  482 (569)
                      -.+|+.|++++.. ++..++...+.+.|+|++|.+.+-.+.... ......+++|..||+++++++. + .+++.+++|+
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq  198 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQ  198 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHH
Confidence            3678888887753 345566777777779999999887764332 2334557889999999988872 2 6788888888


Q ss_pred             EEEccCCcccc-chhhhhcCCCCCcEEeCcCCcccccC------CcCcccCCCCCEEECCCCcceecCCcCc-cCCCCCC
Q 047977          483 RVRFDGNQFTG-NITRAFGVHPRLDFIRLSGNHFIGEI------SPDWGECRNLSNLQLDRNKISGGIPAEL-GNLTRLG  554 (569)
Q Consensus       483 ~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~------~~~l~~~~~L~~L~l~~n~~~~~~~~~l-~~l~~L~  554 (569)
                      .|.+.+=.+.. .....+-++++|+.||+|+-+.....      -+.-..+|.|+.||.+++.+.....+.+ ..-++|+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            88888766653 33344667899999999887643221      1123457888888888887775443333 3445555


Q ss_pred             eEe
Q 047977          555 VLS  557 (569)
Q Consensus       555 ~L~  557 (569)
                      .+.
T Consensus       279 ~i~  281 (699)
T KOG3665|consen  279 QIA  281 (699)
T ss_pred             hhh
Confidence            543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.68  E-value=2.5e-05  Score=81.31  Aligned_cols=154  Identities=18%  Similarity=0.202  Sum_probs=104.0

Q ss_pred             CCCCEEEccCCcccc-cCCccc-cCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcE
Q 047977          382 ASLVAFDVNTNQLHG-ELPENI-SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEE  459 (569)
Q Consensus       382 ~~L~~L~l~~~~~~~-~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  459 (569)
                      .+|+.|++++..... .++..+ ..+|+|+.|.+.+-.+....-..++.--|+|..||++++.++..  .+++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            578999998864431 222222 34799999999887665433233333334999999999998743  67888999999


Q ss_pred             EEccCCccee-eCCccccCCCCCcEEEccCCccccch--h----hhhcCCCCCcEEeCcCCcccccCCcC-cccCCCCCE
Q 047977          460 LTVNGNNFTG-SLPACMRNCSNLNRVRFDGNQFTGNI--T----RAFGVHPRLDFIRLSGNHFIGEISPD-WGECRNLSN  531 (569)
Q Consensus       460 L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~--~----~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~  531 (569)
                      |.+.+=.+.. .....+-++++|+.||+|..+.....  .    +.-..+|.|+.||.|+..+....-+. +..-|+|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            9998766653 12234667899999999987654321  1    22346899999999999886554444 445567777


Q ss_pred             EECCCC
Q 047977          532 LQLDRN  537 (569)
Q Consensus       532 L~l~~n  537 (569)
                      +.+-++
T Consensus       280 i~~~~~  285 (699)
T KOG3665|consen  280 IAALDC  285 (699)
T ss_pred             hhhhhh
Confidence            765543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.65  E-value=8.2e-05  Score=62.52  Aligned_cols=124  Identities=14%  Similarity=0.100  Sum_probs=86.8

Q ss_pred             ceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCC
Q 047977          434 INVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGN  513 (569)
Q Consensus       434 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  513 (569)
                      +.+++++.++. .+...-....+...+|+++|.+.  ....|..++.|..|.++.|.++...|.--..+|.|+.|.+.+|
T Consensus        22 ~e~~LR~lkip-~ienlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   22 RELDLRGLKIP-VIENLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             ccccccccccc-chhhccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            34555555543 11111122356788899999886  2345788889999999999998877776667889999999999


Q ss_pred             cccccC-CcCcccCCCCCEEECCCCcceec---CCcCccCCCCCCeEeCcC
Q 047977          514 HFIGEI-SPDWGECRNLSNLQLDRNKISGG---IPAELGNLTRLGVLSLDS  560 (569)
Q Consensus       514 ~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~---~~~~l~~l~~L~~L~l~~  560 (569)
                      .+.... ...++.||.|+.|.+-+|+++..   -...+-.+|+|+.||.++
T Consensus        99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            876332 12378899999999999988842   122345688898888764

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.64  E-value=3.1e-06  Score=66.04  Aligned_cols=84  Identities=25%  Similarity=0.311  Sum_probs=35.0

Q ss_pred             CCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEE
Q 047977          405 LVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRV  484 (569)
Q Consensus       405 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  484 (569)
                      ...|+.+++++|.+. .+|..|...+|..+.+++++|.+. .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|
T Consensus        52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML  128 (177)
T ss_pred             CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence            344444455555444 333333333334444444444443 33444444444444444444444 233333333444444


Q ss_pred             EccCCcc
Q 047977          485 RFDGNQF  491 (569)
Q Consensus       485 ~l~~~~~  491 (569)
                      +..+|..
T Consensus       129 ds~~na~  135 (177)
T KOG4579|consen  129 DSPENAR  135 (177)
T ss_pred             cCCCCcc
Confidence            4444433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.47  E-value=8.9e-06  Score=83.48  Aligned_cols=236  Identities=19%  Similarity=0.134  Sum_probs=110.6

Q ss_pred             CCCCCCEEECCCCCCCCC-C-CccCCCCCCCcEEEcccc-cccccC----CccccCCCCCCEEEcccCc-cccCCchhhh
Q 047977           66 NLRKVRYLDLGGNFLETP-D-WSKFSNMPSLTHLSLCYN-ELTLEF----PSFILTCRNLTYLDLSLNK-LSGLIPERLF  137 (569)
Q Consensus        66 ~l~~L~~L~l~~~~~~~~-~-~~~~~~~~~L~~L~l~~~-~~~~~~----~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~  137 (569)
                      .++.|+.+.+.++.-... . ......++.|+.|+++++ ......    ......+++|+.++++.+. +++.....+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            356666666665533222 1 123345667777776652 111011    1223345677777777766 5544444444


Q ss_pred             hcCCCCcEEeccCCc-cccc-CCcCCCCCCCCCEEEccCCccccC--CCcCcCCCCCCcEEEcccCcceecCCccccCCC
Q 047977          138 TNLGKLEYLNLTDNQ-FQGK-LSPNVSKLSNLTVLRLATNKFSGP--IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLK  213 (569)
Q Consensus       138 ~~~~~L~~L~l~~~~-~~~~-~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~  213 (569)
                      ..+++|++|.+..|. ++.. +......+++|++|++++|.....  .......+++++.+.+....          .++
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~c~  335 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------GCP  335 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------CCc
Confidence            457777777766555 3322 112234566777777776654211  11112345555554433222          133


Q ss_pred             CCCEEEcccCCCC---cCCCcCCcCCCCCCEEEcccccceecc-CccCcCCCCCCEEeCcCCcCccccCccccCCCCCCc
Q 047977          214 NLQHLDLRMNALN---STIPPELGLCTNLSFLALAMNQLSGGL-PLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELE  289 (569)
Q Consensus       214 ~L~~L~l~~~~~~---~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  289 (569)
                      .++.+.+..+...   .........+++++.+.+..+...+.. ...+.+++.|+ ..+..+          ......++
T Consensus       336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~----------~~~~~~l~  404 (482)
T KOG1947|consen  336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR----------LCRSDSLR  404 (482)
T ss_pred             cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH----------hccCCccc
Confidence            4444444433221   122223456666777666666533322 23344555552 211111          11122266


Q ss_pred             EEEccCCcceeeCC-ccccC-CCCCcEEecccccc
Q 047977          290 SLQIQNNSFMGNIP-PEIGL-LTKLQYLFLYRNHF  322 (569)
Q Consensus       290 ~L~l~~~~~~~~~~-~~~~~-~~~L~~L~l~~~~~  322 (569)
                      .+++..+....... ..... +..++.+.+.++..
T Consensus       405 ~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  405 VLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             eEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            77777665432211 11111 44556666666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=1.3e-05  Score=70.44  Aligned_cols=98  Identities=17%  Similarity=0.155  Sum_probs=72.5

Q ss_pred             CCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchh-hhhcCCCCCcEEeC
Q 047977          432 SLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNIT-RAFGVHPRLDFIRL  510 (569)
Q Consensus       432 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l  510 (569)
                      +.+.|++++|.+.|.  ....+++.|+.|.|+-|+|+.  ...+..|++|++|+|..|.+..... +-+.++|+|+.|-|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            677888888888642  234567888999999898873  3457888899999998888865332 34778889999888


Q ss_pred             cCCcccccCCcC-----cccCCCCCEEE
Q 047977          511 SGNHFIGEISPD-----WGECRNLSNLQ  533 (569)
Q Consensus       511 ~~~~~~~~~~~~-----l~~~~~L~~L~  533 (569)
                      ..|+.-+..+..     +..+|+|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            888876554433     67788888876

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.34  E-value=2.9e-05  Score=79.64  Aligned_cols=187  Identities=18%  Similarity=0.110  Sum_probs=90.3

Q ss_pred             CCCCCcEEeccccccccc--CCccccCCCCCCEEEccCC-cccccc----CcccccCCCCCEEEcccCc-ccccCCcccc
Q 047977          308 LLTKLQYLFLYRNHFSGP--IPSEIGKLTSLEKLDLSGN-QLSGTI----PPTLWNLTNLLSLQLFFNN-LSGTIPPEIG  379 (569)
Q Consensus       308 ~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~-~~~~~~----~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~  379 (569)
                      .++.|+.+.+.++.-...  .......++.|+.|+++++ ......    ......+++|+.++++.+. ++......+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            367788888877743322  2234456778888888763 111111    1223345677777777766 3322222222


Q ss_pred             -CCCCCCEEEccCCc-cccc-CCccccCCCCCCEEEccCCccccc--CCchhhccCCCCceEEcccCcCccccChhhhCC
Q 047977          380 -SMASLVAFDVNTNQ-LHGE-LPENISRLVNLNKFSVFTNNFSGS--IPGDFGKFSPSLINVSFSNNSFSGELPYELCSG  454 (569)
Q Consensus       380 -~~~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  454 (569)
                       .|++|+.+.+.+|. ++.. +......++.|+.+++++|.....  +...... .++++.|.+....          .+
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~-c~~l~~l~~~~~~----------~c  334 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN-CPNLRELKLLSLN----------GC  334 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh-CcchhhhhhhhcC----------CC
Confidence             26677777766665 3322 122334456677776666643211  1111112 2244443332221          13


Q ss_pred             CCCcEEEccCCcce---eeCCccccCCCCCcEEEccCCccccch-hhhhcCCCCC
Q 047977          455 FALEELTVNGNNFT---GSLPACMRNCSNLNRVRFDGNQFTGNI-TRAFGVHPRL  505 (569)
Q Consensus       455 ~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L  505 (569)
                      ..++.+.+.++.-.   .........++.++.+.+.++...... ...+..++.|
T Consensus       335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            33444444443221   112233466777777777777643322 2344455544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.06  E-value=0.0003  Score=61.93  Aligned_cols=108  Identities=21%  Similarity=0.282  Sum_probs=59.9

Q ss_pred             CCCCCCEEEccCCcccccCCchhhccCCCCceEEcccC--cCccccChhhhCCCCCcEEEccCCccee-eCCccccCCCC
Q 047977          404 RLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNN--SFSGELPYELCSGFALEELTVNGNNFTG-SLPACMRNCSN  480 (569)
Q Consensus       404 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~  480 (569)
                      .+..++.+++.+..++..  ..+..++ +|++|.++.|  +..+.+......+++|++|++++|++.. .....+..+.+
T Consensus        41 ~~~~le~ls~~n~gltt~--~~~P~Lp-~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL--TNFPKLP-KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             cccchhhhhhhccceeec--ccCCCcc-hhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            344444444555444422  2333343 6666666666  4444444444455777777777777652 11123456666


Q ss_pred             CcEEEccCCcccc---chhhhhcCCCCCcEEeCcCCc
Q 047977          481 LNRVRFDGNQFTG---NITRAFGVHPRLDFIRLSGNH  514 (569)
Q Consensus       481 L~~L~l~~~~~~~---~~~~~l~~l~~L~~L~l~~~~  514 (569)
                      |..|++..|+.+.   .-...|..+++|++||-....
T Consensus       118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             hhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            7777777776543   233446667777777665543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.89  E-value=3.7e-05  Score=67.79  Aligned_cols=100  Identities=18%  Similarity=0.118  Sum_probs=75.2

Q ss_pred             CCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCC-cCcccCCCCCEE
Q 047977          454 GFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEIS-PDWGECRNLSNL  532 (569)
Q Consensus       454 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L  532 (569)
                      +.+.+.|+..||.+.+.  .....++.|+.|.|+-|+++...|  +..|+.|++|+|..|.|.+.-. .-+.++|+|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            45678889999988732  234678999999999999985544  7789999999999998864321 237889999999


Q ss_pred             ECCCCcceecCCcC-----ccCCCCCCeEe
Q 047977          533 QLDRNKISGGIPAE-----LGNLTRLGVLS  557 (569)
Q Consensus       533 ~l~~n~~~~~~~~~-----l~~l~~L~~L~  557 (569)
                      -|..|.-.+..+..     +.-+|+|++||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99998877654443     34578888776

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.87  E-value=0.00047  Score=60.73  Aligned_cols=124  Identities=20%  Similarity=0.169  Sum_probs=81.0

Q ss_pred             CCceEEcccCcCc-cccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCC--ccccchhhhhcCCCCCcEE
Q 047977          432 SLINVSFSNNSFS-GELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGN--QFTGNITRAFGVHPRLDFI  508 (569)
Q Consensus       432 ~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L  508 (569)
                      ..+.+.+..|... +.+......+..|+.|.+.++.++.  ...+..+++|+.|.++.|  .+....+.....+|+|++|
T Consensus        19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l   96 (260)
T KOG2739|consen   19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVL   96 (260)
T ss_pred             hhhhhhcchhhhcCCCcccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEE
Confidence            3444555544322 1233334456678888888888872  345677889999999999  5555444445567999999


Q ss_pred             eCcCCccccc-CCcCcccCCCCCEEECCCCcceecCC---cCccCCCCCCeEe
Q 047977          509 RLSGNHFIGE-ISPDWGECRNLSNLQLDRNKISGGIP---AELGNLTRLGVLS  557 (569)
Q Consensus       509 ~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~  557 (569)
                      ++++|++... ....++.+.+|..|++.+|..+...-   ..+.-+++|++|+
T Consensus        97 ~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen   97 NLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             eecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            9999998631 12336778889999999998774110   1123356666665

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.09  E-value=0.0023  Score=54.16  Aligned_cols=79  Identities=18%  Similarity=0.164  Sum_probs=32.1

Q ss_pred             CcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccC-CcCc-ccCCCCCEEECCCC-cceecCCcCccCCCCCCeEe
Q 047977          481 LNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEI-SPDW-GECRNLSNLQLDRN-KISGGIPAELGNLTRLGVLS  557 (569)
Q Consensus       481 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l-~~~~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~  557 (569)
                      ++.+|=+++.+..+..+.+.++++++.|.+.+|+--+.. .+-+ +-.++|+.|+|++| +|++.....+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            444444444444444444444444444444444321110 0000 12344444444444 24444444444444444444


Q ss_pred             Cc
Q 047977          558 LD  559 (569)
Q Consensus       558 l~  559 (569)
                      +.
T Consensus       183 l~  184 (221)
T KOG3864|consen  183 LY  184 (221)
T ss_pred             hc
Confidence            43

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.03  E-value=0.0098  Score=30.79  Aligned_cols=7  Identities=57%  Similarity=1.151  Sum_probs=2.6

Q ss_pred             EEeCcCC
Q 047977          507 FIRLSGN  513 (569)
Q Consensus       507 ~L~l~~~  513 (569)
                      +||+++|
T Consensus         4 ~Ldls~n   10 (22)
T PF00560_consen    4 YLDLSGN   10 (22)
T ss_dssp             EEEETSS
T ss_pred             EEECCCC
Confidence            3333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.78  E-value=0.016  Score=29.97  Aligned_cols=19  Identities=32%  Similarity=0.632  Sum_probs=9.5

Q ss_pred             CcEEEccCCccccchhhhhc
Q 047977          481 LNRVRFDGNQFTGNITRAFG  500 (569)
Q Consensus       481 L~~L~l~~~~~~~~~~~~l~  500 (569)
                      |++||+++|.++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 3443343

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.29  E-value=0.00025  Score=70.70  Aligned_cols=181  Identities=20%  Similarity=0.256  Sum_probs=83.4

Q ss_pred             CCCEEEcccCccccc----CCccccCCCCCCEEEccCCcccccCC----ccccCC-CCCCEEEccCCcccccC----Cch
Q 047977          359 NLLSLQLFFNNLSGT----IPPEIGSMASLVAFDVNTNQLHGELP----ENISRL-VNLNKFSVFTNNFSGSI----PGD  425 (569)
Q Consensus       359 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l-~~L~~l~l~~~~~~~~~----~~~  425 (569)
                      .+..+.+.+|.+...    +...+...+.|..+++++|.+...-.    ..+... ..++.+.+..|.++..-    .+.
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            367777777776532    22344556777888888777763211    122222 34555556555554332    223


Q ss_pred             hhccCCCCceEEcccCcCccc----cChhhh----CCCCCcEEEccCCcceeeC----CccccCCCC-CcEEEccCCccc
Q 047977          426 FGKFSPSLINVSFSNNSFSGE----LPYELC----SGFALEELTVNGNNFTGSL----PACMRNCSN-LNRVRFDGNQFT  492 (569)
Q Consensus       426 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~----~~~~L~~L~l~~~~~~~~~----~~~l~~~~~-L~~L~l~~~~~~  492 (569)
                      +.. ...++.++++.|.+...    ++..+.    ...+++.|.+++|.++...    ...+...+. +.++++.+|.+.
T Consensus       168 L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  168 LEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             Hhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence            333 23566666666654211    111111    2344555555555544211    112233333 444555555443


Q ss_pred             cc----hhhhhcCC-CCCcEEeCcCCcccccCCc----CcccCCCCCEEECCCCcce
Q 047977          493 GN----ITRAFGVH-PRLDFIRLSGNHFIGEISP----DWGECRNLSNLQLDRNKIS  540 (569)
Q Consensus       493 ~~----~~~~l~~l-~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~n~~~  540 (569)
                      +.    ....+..+ +.++++++++|.++.....    .+..+++++.+.++.|.+.
T Consensus       247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            22    22223333 4445555555555432222    2344445555555555544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.60  E-value=0.02  Score=48.65  Aligned_cols=35  Identities=17%  Similarity=0.207  Sum_probs=21.2

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCEEEccCCc
Q 047977          383 SLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNN  417 (569)
Q Consensus       383 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~  417 (569)
                      .++.++.+++.+..+-...+.++++++.+.+.+|.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            46666666666665544555666666666666553

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.35  E-value=0.00074  Score=67.39  Aligned_cols=186  Identities=20%  Similarity=0.197  Sum_probs=99.9

Q ss_pred             ccCCCCCCEEEccCCccccccCc----ccccC-CCCCEEEcccCccccc----CCccccCCCCCCEEEccCCcccc----
Q 047977          330 IGKLTSLEKLDLSGNQLSGTIPP----TLWNL-TNLLSLQLFFNNLSGT----IPPEIGSMASLVAFDVNTNQLHG----  396 (569)
Q Consensus       330 l~~~~~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~----  396 (569)
                      +...++|+.|++++|.+.+....    .+... ..++.|++..|.++..    +...+.....++.++++.|.+..    
T Consensus       111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~  190 (478)
T KOG4308|consen  111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL  190 (478)
T ss_pred             hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence            34445555555555554422111    11111 3344455555554422    12233335556666666555421    


Q ss_pred             cCCcc----ccCCCCCCEEEccCCcccccCC----chhhccCCCCceEEcccCcCccccC----hhhhCC-CCCcEEEcc
Q 047977          397 ELPEN----ISRLVNLNKFSVFTNNFSGSIP----GDFGKFSPSLINVSFSNNSFSGELP----YELCSG-FALEELTVN  463 (569)
Q Consensus       397 ~~~~~----~~~l~~L~~l~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~  463 (569)
                      .++..    +....+++.+.+.+|.++...-    ..+......+..+++..|.+.+...    ..+... ..++.++++
T Consensus       191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~  270 (478)
T KOG4308|consen  191 VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLS  270 (478)
T ss_pred             HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhh
Confidence            11112    2346677778888877653221    2223333336678888888765422    233333 567888888


Q ss_pred             CCcceeeC----CccccCCCCCcEEEccCCccccch----hhhhcCCCCCcEEeCcCCcc
Q 047977          464 GNNFTGSL----PACMRNCSNLNRVRFDGNQFTGNI----TRAFGVHPRLDFIRLSGNHF  515 (569)
Q Consensus       464 ~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~  515 (569)
                      .|.++...    ...+..++.++++.++.|++....    ...+.....+.++.+.++..
T Consensus       271 ~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~  330 (478)
T KOG4308|consen  271 RNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGK  330 (478)
T ss_pred             cCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCc
Confidence            88887533    345667788888888888886432    23344556666677765543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.90  E-value=0.098  Score=24.99  Aligned_cols=10  Identities=40%  Similarity=0.501  Sum_probs=3.2

Q ss_pred             CcEEeCcCCc
Q 047977          505 LDFIRLSGNH  514 (569)
Q Consensus       505 L~~L~l~~~~  514 (569)
                      |++|++++|+
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3344444443

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.40  E-value=0.11  Score=27.45  Aligned_cols=15  Identities=33%  Similarity=0.521  Sum_probs=6.2

Q ss_pred             CCCcEEEccCCcccc
Q 047977          479 SNLNRVRFDGNQFTG  493 (569)
Q Consensus       479 ~~L~~L~l~~~~~~~  493 (569)
                      ++|++|+|++|.+++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            344555555554443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.15  E-value=0.014  Score=50.61  Aligned_cols=84  Identities=17%  Similarity=0.188  Sum_probs=40.1

Q ss_pred             CCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeE
Q 047977          477 NCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVL  556 (569)
Q Consensus       477 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  556 (569)
                      .+...+.||++.|.+.. ....|+-++.+..||++.|.+. ..|++++....+..++.+.|..+ -.|.++...++++++
T Consensus        40 ~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            33444455555444431 2222334444445555555444 44555555555555555555444 345555555555555


Q ss_pred             eCcCCcC
Q 047977          557 SLDSNEL  563 (569)
Q Consensus       557 ~l~~n~~  563 (569)
                      +.-+|++
T Consensus       117 e~k~~~~  123 (326)
T KOG0473|consen  117 EQKKTEF  123 (326)
T ss_pred             hhccCcc
Confidence            5555544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.29  E-value=0.44  Score=25.66  Aligned_cols=16  Identities=38%  Similarity=0.493  Sum_probs=9.1

Q ss_pred             CCCCEEECCCCcceec
Q 047977          527 RNLSNLQLDRNKISGG  542 (569)
Q Consensus       527 ~~L~~L~l~~n~~~~~  542 (569)
                      ++|+.|++++|++...
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4556666666666543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.29  E-value=0.44  Score=25.66  Aligned_cols=16  Identities=38%  Similarity=0.493  Sum_probs=9.1

Q ss_pred             CCCCEEECCCCcceec
Q 047977          527 RNLSNLQLDRNKISGG  542 (569)
Q Consensus       527 ~~L~~L~l~~n~~~~~  542 (569)
                      ++|+.|++++|++...
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4556666666666543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.92  E-value=0.61  Score=25.11  Aligned_cols=13  Identities=31%  Similarity=0.588  Sum_probs=5.3

Q ss_pred             CCcEEEccCCccc
Q 047977          480 NLNRVRFDGNQFT  492 (569)
Q Consensus       480 ~L~~L~l~~~~~~  492 (569)
                      +|+.|++++|.+.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.92  E-value=0.61  Score=25.11  Aligned_cols=13  Identities=31%  Similarity=0.588  Sum_probs=5.3

Q ss_pred             CCcEEEccCCccc
Q 047977          480 NLNRVRFDGNQFT  492 (569)
Q Consensus       480 ~L~~L~l~~~~~~  492 (569)
                      +|+.|++++|.+.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.20  E-value=0.016  Score=50.20  Aligned_cols=94  Identities=16%  Similarity=0.111  Sum_probs=72.9

Q ss_pred             cCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCC
Q 047977           11 PIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSN   90 (569)
Q Consensus        11 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~   90 (569)
                      +.-..+..++..++||++.+.+. ....-|+-++.|..|+++.+.+. ..|..+.....++.++...|..... +..++.
T Consensus        33 ~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~-p~s~~k  109 (326)
T KOG0473|consen   33 IPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQ-PKSQKK  109 (326)
T ss_pred             cchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhC-Cccccc
Confidence            34455778889999999998877 56666777888889999988887 6777788888888888877766543 456788


Q ss_pred             CCCCcEEEccccccccc
Q 047977           91 MPSLTHLSLCYNELTLE  107 (569)
Q Consensus        91 ~~~L~~L~l~~~~~~~~  107 (569)
                      .+++++++..++.+...
T Consensus       110 ~~~~k~~e~k~~~~~~~  126 (326)
T KOG0473|consen  110 EPHPKKNEQKKTEFFRK  126 (326)
T ss_pred             cCCcchhhhccCcchHH
Confidence            89999999998876533

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	569
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-43
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-36
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-43
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-36
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-14
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-04
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		3e-09
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		3e-06
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		6e-06
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		4e-04
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		6e-06
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		5e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		7e-06
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		8e-05
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		1e-04
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		1e-04
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		2e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		2e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		2e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		4e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		4e-04
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		5e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		6e-04
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		8e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  172 bits (437), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 188/622 (30%), Positives = 276/622 (44%), Gaps = 87/622 (13%)
Query: 1   LDLSHNNISGPIPPAIGXXXXXXXXXXXXXXXEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           LDLS N++SGP+                      +  + +G  S L++L+V +N+L+  F
Sbjct: 105 LDLSRNSLSGPV----------------------TTLTSLGSCSGLKFLNVSSNTLD--F 140
Query: 61  PFQLS---NLRKVRYLDLGGNFLETPD---WSKFSNMPSLTHLSLCYNELTLEFPSFILT 114
           P ++S    L  +  LDL  N +   +   W        L HL++  N+++ +    +  
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSR 198
Query: 115 CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLAT 174
           C NL +LD+S N  S  IP     +   L++L+++ N+  G  S  +S  + L +L +++
Sbjct: 199 CVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 175 NKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSL-GQLKNLQHLDLRMNALNSTIPPEL 233
           N+F GPIP  + L S +Q + L  N FTG+IP  L G    L  LDL  N     +PP  
Sbjct: 257 NQFVGPIP-PLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 234 GLCTNLSFLALAMXXXXXXXXXXXXXXXXXXXXXXXD-NFLSGEISANLIGNWTELESLQ 292
           G C+ L  LAL+                          N  SGE+  +L      L +L 
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
Query: 293 IQNNSFMGNIPPEIGLLTK--LQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTI 350
           + +N+F G I P +    K  LQ L+L  N F+G IP  +   + L  L LS N LSGTI
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434
Query: 351 PPXXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNK 410
           P                    G IP E+  + +L    ++ N L GE+P  +S   NLN 
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 411 FSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGS 470
            S+  N  +G IP   G+   +L  +  SNNSFSG +P EL    +L  L +N N F G+
Sbjct: 495 ISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 471 LPACM--------------------------RNCSNL-NRVRFDG------NQFTG---- 493
           +PA M                          + C    N + F G      N+ +     
Sbjct: 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613
Query: 494 NIT-RAFGVH--PRLD------FIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIP 544
           NIT R +G H  P  D      F+ +S N   G I  + G    L  L L  N ISG IP
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 545 AELGNLTRLGVLSLDSNELTGK 566
            E+G+L  L +L L SN+L G+
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGR 695

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 150/463 (32%), Positives = 218/463 (47%), Gaps = 73/463 (15%)
Query: 118 LTYLDLSLNKLSGLIPERLFTNLGK---LEYLNLTDN--QFQGKLSPNVSKLSNLTVLRL 172
           LT LDLS N LSG  P    T+LG    L++LN++ N   F GK+S  + KL++L VL L
Sbjct: 102 LTSLDLSRNSLSG--PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 158
Query: 173 ATNKFSGPIPGDIGLM-----SNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNS 227
           + N  SG     +G +       ++ + +  N  +G +  S  +  NL+ LD+  N  ++
Sbjct: 159 SANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFST 214
Query: 228 TIPPELGLCTNLSFLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISANLIGNWTE 287
            IP  LG C+ L  L ++                         N LSG+ S   I   TE
Sbjct: 215 GIP-FLGDCSALQHLDIS------------------------GNKLSGDFS-RAISTCTE 248
Query: 288 LESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEI-GKLTSLEKLDLSGNQL 346
           L+ L I +N F+G IPP    L  LQYL L  N F+G IP  + G   +L  LDLSGN  
Sbjct: 249 LKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
Query: 347 SGTIPPXXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELP-ENISRL 405
            G +PP                          GS + L +  +++N   GELP + + ++
Sbjct: 307 YGAVPPF------------------------FGSCSLLESLALSSNNFSGELPMDTLLKM 342
Query: 406 VNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSG--FALEELTVN 463
             L    +  N FSG +P      S SL+ +  S+N+FSG +   LC      L+EL + 
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402
Query: 464 GNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDW 523
            N FTG +P  + NCS L  +    N  +G I  + G   +L  ++L  N   GEI  + 
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 524 GECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGK 566
              + L  L LD N ++G IP+ L N T L  +SL +N LTG+
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  172 bits (436), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 188/622 (30%), Positives = 276/622 (44%), Gaps = 87/622 (13%)
Query: 1   LDLSHNNISGPIPPAIGXXXXXXXXXXXXXXXEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           LDLS N++SGP+                      +  + +G  S L++L+V +N+L+  F
Sbjct: 102 LDLSRNSLSGPV----------------------TTLTSLGSCSGLKFLNVSSNTLD--F 137
Query: 61  PFQLS---NLRKVRYLDLGGNFLETPD---WSKFSNMPSLTHLSLCYNELTLEFPSFILT 114
           P ++S    L  +  LDL  N +   +   W        L HL++  N+++ +    +  
Sbjct: 138 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSR 195
Query: 115 CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLAT 174
           C NL +LD+S N  S  IP     +   L++L+++ N+  G  S  +S  + L +L +++
Sbjct: 196 CVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 175 NKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSL-GQLKNLQHLDLRMNALNSTIPPEL 233
           N+F GPIP  + L S +Q + L  N FTG+IP  L G    L  LDL  N     +PP  
Sbjct: 254 NQFVGPIP-PLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 234 GLCTNLSFLALAMXXXXXXXXXXXXXXXXXXXXXXXD-NFLSGEISANLIGNWTELESLQ 292
           G C+ L  LAL+                          N  SGE+  +L      L +L 
Sbjct: 312 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 371
Query: 293 IQNNSFMGNIPPEIGLLTK--LQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTI 350
           + +N+F G I P +    K  LQ L+L  N F+G IP  +   + L  L LS N LSGTI
Sbjct: 372 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 431
Query: 351 PPXXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNK 410
           P                    G IP E+  + +L    ++ N L GE+P  +S   NLN 
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 491
Query: 411 FSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGS 470
            S+  N  +G IP   G+   +L  +  SNNSFSG +P EL    +L  L +N N F G+
Sbjct: 492 ISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 471 LPACM--------------------------RNCSNL-NRVRFDG------NQFTG---- 493
           +PA M                          + C    N + F G      N+ +     
Sbjct: 551 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 610
Query: 494 NIT-RAFGVH--PRLD------FIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIP 544
           NIT R +G H  P  D      F+ +S N   G I  + G    L  L L  N ISG IP
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 545 AELGNLTRLGVLSLDSNELTGK 566
            E+G+L  L +L L SN+L G+
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGR 692

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  149 bits (377), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 150/463 (32%), Positives = 218/463 (47%), Gaps = 73/463 (15%)
Query: 118 LTYLDLSLNKLSGLIPERLFTNLGK---LEYLNLTDN--QFQGKLSPNVSKLSNLTVLRL 172
           LT LDLS N LSG  P    T+LG    L++LN++ N   F GK+S  + KL++L VL L
Sbjct: 99  LTSLDLSRNSLSG--PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 155
Query: 173 ATNKFSGPIPGDIGLM-----SNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNS 227
           + N  SG     +G +       ++ + +  N  +G +  S  +  NL+ LD+  N  ++
Sbjct: 156 SANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFST 211
Query: 228 TIPPELGLCTNLSFLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISANLIGNWTE 287
            IP  LG C+ L  L ++                         N LSG+ S   I   TE
Sbjct: 212 GIP-FLGDCSALQHLDIS------------------------GNKLSGDFS-RAISTCTE 245
Query: 288 LESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEI-GKLTSLEKLDLSGNQL 346
           L+ L I +N F+G IPP    L  LQYL L  N F+G IP  + G   +L  LDLSGN  
Sbjct: 246 LKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 303
Query: 347 SGTIPPXXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELP-ENISRL 405
            G +PP                          GS + L +  +++N   GELP + + ++
Sbjct: 304 YGAVPPF------------------------FGSCSLLESLALSSNNFSGELPMDTLLKM 339
Query: 406 VNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSG--FALEELTVN 463
             L    +  N FSG +P      S SL+ +  S+N+FSG +   LC      L+EL + 
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 399
Query: 464 GNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDW 523
            N FTG +P  + NCS L  +    N  +G I  + G   +L  ++L  N   GEI  + 
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 524 GECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGK 566
              + L  L LD N ++G IP+ L N T L  +SL +N LTG+
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 96/243 (39%), Gaps = 27/243 (11%)
Query: 325 PIPSEIGKLTSLEKLDLSG-NQLSGTIPPXXXXXXXXXXXXXXXXXXXGTIPPEIGSMAS 383
           PIPS +  L  L  L + G N L G IPP                   G IP  +  + +
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 384 LVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSF 443
           LV  D + N L G LP +IS L NL   +   N  SG+IP  +G FS             
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK------------ 174
Query: 444 SGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHP 503
                           +T++ N  TG +P    N  NL  V    N   G+ +  FG   
Sbjct: 175 ------------LFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDK 221
Query: 504 RLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNEL 563
               I L+ N    ++    G  +NL+ L L  N+I G +P  L  L  L  L++  N L
Sbjct: 222 NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 564 TGK 566
            G+
Sbjct: 281 CGE 283

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 6/125 (4%)
Query: 448 PYELCSGFA----LEELTVNG-NNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVH 502
           PY + S  A    L  L + G NN  G +P  +   + L+ +       +G I       
Sbjct: 65  PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 503 PRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGV-LSLDSN 561
             L  +  S N   G + P      NL  +  D N+ISG IP   G+ ++L   +++  N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 562 ELTGK 566
            LTGK
Sbjct: 185 RLTGK 189

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 5/162 (3%)
Query: 70  VRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFIL-TCRNLTYLDLSLNKL 128
           VRYL LGGN L   D S    + +LT+L L  N+L    P+ +     NL  L L  N+L
Sbjct: 65  VRYLALGGNKLH--DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL 121
Query: 129 SGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLM 188
             L P+ +F  L  L YLNL  NQ Q        KL+NLT L L+ N+      G    +
Sbjct: 122 QSL-PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180
Query: 189 SNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIP 230
           + ++ + L+ N           +L +LQ++ L  N  + T P
Sbjct: 181 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 3/195 (1%)
Query: 35  SIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSL 94
           +IPS +   ++ + L + +N L+         L K+R L L  N L+T     F  + +L
Sbjct: 30  AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87
Query: 95  THLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQ 154
             L +  N+L            NL  L L  N+L  L P R+F +L KL YL+L  N+ Q
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNELQ 146
Query: 155 GKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKN 214
                   KL++L  LRL  N+      G    ++ ++ ++L NN        +   L+ 
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206
Query: 215 LQHLDLRMNALNSTI 229
           L+ L L+ N  + T 
Sbjct: 207 LKMLQLQENPWDCTC 221

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 9/170 (5%)
Query: 35  SIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSL 94
           S+PS  G  ++ + L + +  L          L K+ +L+L  N L+T     F ++  L
Sbjct: 28  SVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 95  THLSLCYNELTLEFPSFILTCRNLTYLD---LSLNKLSGLIPERLFTNLGKLEYLNLTDN 151
             L L  N+L    P  +    +LT LD   L  N+L  L P  +F  L KL+ L L  N
Sbjct: 86  GTLGLANNQLA-SLPLGVF--DHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTN 141
Query: 152 QFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSF 201
           Q Q   +    KL+NL  L L+TN+      G    +  +Q + LF N F
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 1/156 (0%)
Query: 73  LDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLI 132
           LDL    L T   + F  +  LT L+L YN+L             L  L L+ N+L+ L 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL- 98
Query: 133 PERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQ 192
           P  +F +L +L+ L L  NQ +   S    +L+ L  LRL TN+      G    ++N+Q
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 193 LVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNST 228
            + L  N        +  +L  LQ + L  N  + +
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 9/170 (5%)
Query: 35  SIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSL 94
           S+PS  G  ++ + L + +  L          L K+ +L+L  N L+T     F ++  L
Sbjct: 28  SVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 95  THLSLCYNELTLEFPSFILTCRNLTYLD---LSLNKLSGLIPERLFTNLGKLEYLNLTDN 151
             L L  N+L    P  +    +LT LD   L  N+L  L P  +F  L KL+ L L  N
Sbjct: 86  GTLGLANNQLA-SLPLGVF--DHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTN 141
Query: 152 QFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSF 201
           Q Q   +    KL+NL  L L+TN+      G    +  +Q + LF N F
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 1/156 (0%)
Query: 73  LDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLI 132
           LDL    L T   + F  +  LT L+L YN+L             L  L L+ N+L+ L 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL- 98
Query: 133 PERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQ 192
           P  +F +L +L+ L L  NQ +   S    +L+ L  LRL TN+      G    ++N+Q
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 193 LVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNST 228
            + L  N        +  +L  LQ + L  N  + +
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 69/150 (46%), Gaps = 5/150 (3%)
Query: 70  VRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFIL-TCRNLTYLDLSLNKL 128
           VRYL LGGN L   D S    + +LT+L L  N+L    P+ +     NL  L L  N+L
Sbjct: 65  VRYLALGGNKLH--DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL 121
Query: 129 SGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLM 188
             L P+ +F  L  L YL L  NQ Q        KL+NLT L L  N+      G    +
Sbjct: 122 QSL-PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKL 180
Query: 189 SNIQLVELFNNSFTGQIPSSLGQLKNLQHL 218
           + ++ + L +N           +L +L H+
Sbjct: 181 TQLKQLSLNDNQLKSVPDGVFDRLTSLTHI 210

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 138/312 (44%), Gaps = 49/312 (15%)
Query: 40  MGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL 99
           + +L+ L  L+++NN +    P  L NL  +  L+L  N +   D S  S + SL  L+ 
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS--DISALSGLTSLQQLNF 158
Query: 100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSP 159
             N++T   P   LT   L  LD+S NK+S +    +   L  LE L  T+NQ    ++P
Sbjct: 159 G-NQVTDLKPLANLTT--LERLDISSNKVSDI---SVLAKLTNLESLIATNNQI-SDITP 211
Query: 160 NVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLD 219
            +  L+NL  L L  N+      G +  ++N+  ++L NN  +   P  L  L  L  L 
Sbjct: 212 -LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 266
Query: 220 LRMNALNSTIPPELGLCTNLSFLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISA 279
           L  N + S I P  GL T L+ L L                         +N L  +IS 
Sbjct: 267 LGANQI-SNISPLAGL-TALTNLEL------------------------NENQLE-DISP 299
Query: 280 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKL 339
             I N   L  L +  N+ + +I P +  LTKLQ LF Y N  S    S +  LT++  L
Sbjct: 300 --ISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWL 353
Query: 340 DLSGNQLSGTIP 351
               NQ+S   P
Sbjct: 354 SAGHNQISDLTP 365

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 23/176 (13%)
Query: 64  LSNLRKVRYLDLGGNFLETPDWS--KFSNMPSLTHLSLCYNE-LTLEFPSFILTCRNLTY 120
           L  L  ++ LDL  + +E  D    +  N+  L +L+L YNE L LE  +F   C  L  
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFK-ECPQLEL 403
Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFS-G 179
           LD++   L    P   F NL  L  LNL+           ++ L +L  L L  N F  G
Sbjct: 404 LDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDG 463
Query: 180 PIPG----------DIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 225
            I            +I ++S+  L+ +   +F G        L+N+ HLDL  N+L
Sbjct: 464 SISKTNLLQMVGSLEILILSSCNLLSIDQQAFHG--------LRNVNHLDLSHNSL 511

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 15/167 (8%)
Query: 49  LSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEF 108
           L + +N +    P  L NL K+  L+L GN L+  + S  + + S+  L L   ++T   
Sbjct: 74  LELKDNQITDLTP--LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVT 129
Query: 109 PSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLT 168
           P   L+   + YLDL  N+++ + P    TN   L+YL++ +NQ    L+P ++ LS LT
Sbjct: 130 PLAGLSNLQVLYLDL--NQITNISPLAGLTN---LQYLSIGNNQV-NDLTP-LANLSKLT 182
Query: 169 VLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNL 215
            LR   NK S   P  +  + N+  V L +N  +   P  L  L NL
Sbjct: 183 TLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP--LANLSNL 225

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNK 176
           +LT L L  NKL  L P  +F  L  L YLNL+ NQ Q   +    KL+ L  L L TN+
Sbjct: 53  SLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ 111
Query: 177 FSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIP 230
                 G    ++ ++ + L+ N           +L +LQ++ L  N  + T P
Sbjct: 112 LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 40  MGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL 99
           +  L+ L  L + NN ++   P  LS L K+  L LG N  +  + S  + + +LT+L L
Sbjct: 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN--QISNISPLAGLTALTNLEL 294
Query: 100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSP 159
             NE  LE  S I   +NLTYL L  N +S + P    T L +L +       +  K+S 
Sbjct: 295 --NENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF-------YNNKVS- 344
Query: 160 NVSKLSNLT 168
           +VS L+NLT
Sbjct: 345 DVSSLANLT 353

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 40  MGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL 99
           +  L+ L  L + NN ++   P  LS L K+  L LG N  +  + S  + + +LT+L L
Sbjct: 238 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN--QISNISPLAGLTALTNLEL 293
Query: 100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSP 159
             NE  LE  S I   +NLTYL L  N +S + P    T L +L + N        K+S 
Sbjct: 294 --NENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFAN-------NKVS- 343
Query: 160 NVSKLSNLT 168
           +VS L+NLT
Sbjct: 344 DVSSLANLT 352

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 40  MGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL 99
           +  L+ L  L + NN ++   P  LS L K+  L LG N  +  + S  + + +LT+L L
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN--QISNISPLAGLTALTNLEL 290
Query: 100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSP 159
             NE  LE  S I   +NLTYL L  N +S + P    T L +L +       +  K+S 
Sbjct: 291 --NENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF-------YNNKVS- 340
Query: 160 NVSKLSNLT 168
           +VS L+NLT
Sbjct: 341 DVSSLANLT 349

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 40  MGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL 99
           +  L+ L  L + NN ++   P  LS L K+  L LG N  +  + S  + + +LT+L L
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN--QISNISPLAGLTALTNLEL 290
Query: 100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSP 159
             NE  LE  S I   +NLTYL L  N +S + P    T L +L +       +  K+S 
Sbjct: 291 --NENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF-------YNNKVS- 340
Query: 160 NVSKLSNLT 168
           +VS L+NLT
Sbjct: 341 DVSSLANLT 349

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 14/129 (10%)
Query: 40  MGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL 99
           +  L+ L  L + NN ++   P  LS L K+  L LG N  +  + S  + + +LT+L L
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN--QISNISPLAGLTALTNLEL 289
Query: 100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSP 159
             NE  LE  S I   +NLTYL L  N +S + P    ++L KL+ L  ++N+       
Sbjct: 290 --NENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFSNNKVS----- 339
Query: 160 NVSKLSNLT 168
           +VS L+NLT
Sbjct: 340 DVSSLANLT 348

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 14/129 (10%)
Query: 40  MGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL 99
           +  L+ L  L + NN ++   P  LS L K+  L LG N  +  + S  + + +LT+L L
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN--QISNISPLAGLTALTNLEL 290
Query: 100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSP 159
             N+L  E  S I   +NLTYL L  N +S + P    ++L KL+ L  ++N+       
Sbjct: 291 NENQL--EDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFSNNKVS----- 340
Query: 160 NVSKLSNLT 168
           +VS L+NLT
Sbjct: 341 DVSSLANLT 349

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 1/147 (0%)
Query: 60  FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119
           F F+      V+  DL  + +     S FS+   L  L+L  NE+     +      +L 
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326
Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSG 179
            L+LS N L G I  R+F NL KLE L+L+ N  +     +   L NL  L L TN+   
Sbjct: 327 KLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385
Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIP 206
              G    ++++Q + L  N +    P
Sbjct: 386 VPDGIFDRLTSLQKIWLHTNPWDCSCP 412

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 34/195 (17%)
Query: 42  DLSELQYLSVYNNSLNGAFPFQLSNL--RKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL 99
           DL  L++L +  N L+       S+     ++YLDL  N + T   S F  +  L HL  
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDF 403
Query: 100 CYNELTL--EFPSFILTCRNLTYLDLS-----------LNKLSGL--------------I 132
            ++ L    EF  F L+ RNL YLD+S            N LS L              +
Sbjct: 404 QHSNLKQMSEFSVF-LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 133 PERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLMSNI 191
           P+ +FT L  L +L+L+  Q + +LSP   + LS+L VL +A+N+      G    ++++
Sbjct: 463 PD-IFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520
Query: 192 QLVELFNNSFTGQIP 206
           Q + L  N +    P
Sbjct: 521 QKIWLHTNPWDCSCP 535

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 32/197 (16%)
Query: 64  LSNLRKVRYLDLGGNFLETPDWS--KFSNMPSLTHLSLCYNE-LTLEFPSFILTCRNLTY 120
           L NL  +R LDL  + +ET D    +  N+  L  L+L YNE L+L+  +F   C  L  
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLEL 404
Query: 121 LDLSLNKLS------------------------GLIPERLFTNLGKLEYLNLTDNQF-QG 155
           LDL+  +L                          +  E+LF  L  L++LNL  N F +G
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464
Query: 156 KLSP--NVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLK 213
            +    ++  L  L +L L+    S         +  +  V+L +N  T     +L  LK
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524
Query: 214 NLQHLDLRMNALNSTIP 230
            + +L+L  N ++  +P
Sbjct: 525 GI-YLNLASNHISIILP 540

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	569
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-145
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-144
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-143
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-123
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-119
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-113
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-109
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-100
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-47
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-43
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-81
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-79
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-73
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-80
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-70
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-72
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-69
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-68
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-66
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-58
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-62
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-59
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-50
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-49
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-49
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-42
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-47
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-42
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-40
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-39
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-42
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-40
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-39
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-38
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-34
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-37
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-37
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-34
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-29
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-31
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-33
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-30
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-29
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-29
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-28
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-27
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-27
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-19
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-19
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-19
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-14
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	7e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  436 bits (1124), Expect = e-145
 Identities = 163/581 (28%), Positives = 265/581 (45%), Gaps = 27/581 (4%)

Query: 1   LDLSHNNIS---GPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLN 57
           +DLS   ++     +  ++ +L+ L  L L+N+   GS+       + L  L +  NSL+
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLS 113

Query: 58  GAFP--FQLSNLRKVRYLDLGGNFLE-TPDWSKFSNMPSLTHLSLCYNELTLEFPSFILT 114
           G       L +   +++L++  N L+     S    + SL  L L  N ++       + 
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173

Query: 115 ---CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLR 171
              C  L +L +S NK+SG +     +    LE+L+++ N F   + P +   S L  L 
Sbjct: 174 SDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLD 229

Query: 172 LATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPP 231
           ++ NK SG     I   + ++L+ + +N F G IP     LK+LQ+L L  N     IP 
Sbjct: 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPD 287

Query: 232 EL-GLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELES 290
            L G C  L+ L L+ N   G +P    + S L  L LS N  SGE+  + +     L+ 
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347

Query: 291 LQIQNNSFMGNIPPEIG-LLTKLQYLFLYRNHFSGPIPSEIGK--LTSLEKLDLSGNQLS 347
           L +  N F G +P  +  L   L  L L  N+FSGPI   + +    +L++L L  N  +
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407

Query: 348 GTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVN 407
           G IPPTL N + L+SL L FN LSGTIP  +GS++ L    +  N L GE+P+ +  +  
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467

Query: 408 LNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNF 467
           L    +  N+ +G IP      + +L  +S SNN  +GE+P  +     L  L ++ N+F
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCT-NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526

Query: 468 TGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECR 527
           +G++PA + +C +L  +  + N F G I  A           ++ N   G+         
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDG 582

Query: 528 NLSNLQLDRN--KISGGIPAELGNLTRLGVLSLDSNELTGK 566
                    N  +  G    +L  L+     ++ S    G 
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  435 bits (1120), Expect = e-144
 Identities = 174/577 (30%), Positives = 276/577 (47%), Gaps = 23/577 (3%)

Query: 1   LDLSHNNISGPIP-PAIGTLSNLTFLDLNNNLFEGSIPSEM---GDLSELQYLSVYNNSL 56
           L++S N +  P        L++L  LDL+ N   G+            EL++L++  N +
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190

Query: 57  NGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCR 116
           +G     +S    + +LD+  N   T       +  +L HL +  N+L+ +F   I TC 
Sbjct: 191 SGDVD--VSRCVNLEFLDVSSNNFSTG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCT 247

Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVS-KLSNLTVLRLATN 175
            L  L++S N+  G IP      L  L+YL+L +N+F G++   +S     LT L L+ N
Sbjct: 248 ELKLLNISSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

Query: 176 KFSGPIPGDIGLMSNIQLVELFNNSFTGQIP-SSLGQLKNLQHLDLRMNALNSTIPPELG 234
            F G +P   G  S ++ + L +N+F+G++P  +L +++ L+ LDL  N  +  +P  L 
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364

Query: 235 -LCTNLSFLALAMNQLSGGLPLSLSN--LSRLNELGLSDNFLSGEISANLIGNWTELESL 291
            L  +L  L L+ N  SG +  +L     + L EL L +N  +G+I    + N +EL SL
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSL 423

Query: 292 QIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIP 351
            +  N   G IP  +G L+KL+ L L+ N   G IP E+  + +LE L L  N L+G IP
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483

Query: 352 PTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKF 411
             L N TNL  + L  N L+G IP  IG + +L    ++ N   G +P  +    +L   
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543

Query: 412 SVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTV--NGNNFTG 469
            + TN F+G+IP    K S  +     + N  +G+    + +    +E     N   F G
Sbjct: 544 DLNTNLFNGTIPAAMFKQSGKI-----AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598

Query: 470 SLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNL 529
                +   S  N        + G+ +  F  +  + F+ +S N   G I  + G    L
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658

Query: 530 SNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGK 566
             L L  N ISG IP E+G+L  L +L L SN+L G+
Sbjct: 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  432 bits (1114), Expect = e-143
 Identities = 173/574 (30%), Positives = 264/574 (45%), Gaps = 18/574 (3%)

Query: 1   LDLSHNNISGPIPPAI---GTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLN 57
           LDLS N+ISG              L  L ++ N   G +   +     L++L V +N+ +
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFS 213

Query: 58  GAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRN 117
              PF L +   +++LD+ GN L        S    L  L++  N+     P   L   +
Sbjct: 214 TGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK--S 270

Query: 118 LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKF 177
           L YL L+ NK +G IP+ L      L  L+L+ N F G + P     S L  L L++N F
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

Query: 178 SGPIPGD-IGLMSNIQLVELFNNSFTGQIPSSLGQLK-NLQHLDLRMNALNSTIPPELGL 235
           SG +P D +  M  +++++L  N F+G++P SL  L  +L  LDL  N  +  I P L  
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390

Query: 236 C--TNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQI 293
                L  L L  N  +G +P +LSN S L  L LS N+LSG I ++L G+ ++L  L++
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKL 449

Query: 294 QNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPT 353
             N   G IP E+  +  L+ L L  N  +G IPS +   T+L  + LS N+L+G IP  
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509

Query: 354 LWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSV 413
           +  L NL  L+L  N+ SG IP E+G   SL+  D+NTN  +G +P  + +        +
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----I 565

Query: 414 FTNNFSGSIPGDFGKFSP-SLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLP 472
             N  +G               + + +   F G    +L          +    + G   
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625

Query: 473 ACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNL 532
               N  ++  +    N  +G I +  G  P L  + L  N   G I  + G+ R L+ L
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685

Query: 533 QLDRNKISGGIPAELGNLTRLGVLSLDSNELTGK 566
            L  NK+ G IP  +  LT L  + L +N L+G 
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  380 bits (977), Expect = e-123
 Identities = 154/513 (30%), Positives = 226/513 (44%), Gaps = 21/513 (4%)

Query: 66  NLRKVRYLDLGGNFLETPDW---SKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLD 122
              KV  +DL    L        S   ++  L  L L  + +      F     +LT LD
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGF-KCSASLTSLD 106

Query: 123 LSLNKLSGLIPERL-FTNLGKLEYLNLTDNQFQGKLS-PNVSKLSNLTVLRLATNKFSGP 180
           LS N LSG +       +   L++LN++ N            KL++L VL L+ N  SG 
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 181 IPGDI---GLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCT 237
                        ++ + +  N  +G +   + +  NL+ LD+  N  ++ I P LG C+
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI-PFLGDCS 223

Query: 238 NLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNS 297
            L  L ++ N+LSG    ++S  + L  L +S N   G I          L+ L +  N 
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLAENK 280

Query: 298 FMGNIPPEI-GLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPP-TLW 355
           F G IP  + G    L  L L  NHF G +P   G  + LE L LS N  SG +P  TL 
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340

Query: 356 NLTNLLSLQLFFNNLSGTIPPEIGSM-ASLVAFDVNTNQLHGELPENISR--LVNLNKFS 412
            +  L  L L FN  SG +P  + ++ ASL+  D+++N   G +  N+ +     L +  
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400

Query: 413 VFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLP 472
           +  N F+G IP      S  L+++  S N  SG +P  L S   L +L +  N   G +P
Sbjct: 401 LQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459

Query: 473 ACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNL 532
             +     L  +  D N  TG I         L++I LS N   GEI    G   NL+ L
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519

Query: 533 QLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565
           +L  N  SG IPAELG+   L  L L++N   G
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  370 bits (952), Expect = e-119
 Identities = 158/501 (31%), Positives = 228/501 (45%), Gaps = 14/501 (2%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           LD+S N +SG    AI T + L  L++++N F G IP     L  LQYLS+  N   G  
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEI 285

Query: 61  PFQLS-NLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFP-SFILTCRNL 118
           P  LS     +  LDL GN         F +   L  L+L  N  + E P   +L  R L
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345

Query: 119 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSK--LSNLTVLRLATNK 176
             LDLS N+ SG +PE L      L  L+L+ N F G + PN+ +   + L  L L  N 
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405

Query: 177 FSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLC 236
           F+G IP  +   S +  + L  N  +G IPSSLG L  L+ L L +N L   IP EL   
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465

Query: 237 TNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNN 296
             L  L L  N L+G +P  LSN + LN + LS+N L+GEI    IG    L  L++ NN
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNN 524

Query: 297 SFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWN 356
           SF GNIP E+G    L +L L  N F+G IP+ + K +      ++ N ++G     + N
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKN 580

Query: 357 LTNLLSLQLFFN--NLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVF 414
                      N     G    ++  +++    ++ +    G          ++    + 
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640

Query: 415 TNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPAC 474
            N  SG IP + G     L  ++  +N  SG +P E+     L  L ++ N   G +P  
Sbjct: 641 YNMLSGYIPKEIGSMP-YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699

Query: 475 MRNCSNLNRVRFDGNQFTGNI 495
           M   + L  +    N  +G I
Sbjct: 700 MSALTMLTEIDLSNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  352 bits (906), Expect = e-113
 Identities = 148/496 (29%), Positives = 222/496 (44%), Gaps = 17/496 (3%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEM-GDLSELQYLSVYNNSLNGA 59
           L++S N   GPIPP    L +L +L L  N F G IP  + G    L  L +  N   GA
Sbjct: 252 LNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 60  FPFQLSNLRKVRYLDLGGNFL--ETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCR- 116
            P    +   +  L L  N    E P  +    M  L  L L +NE + E P  +     
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDT-LLKMRGLKVLDLSFNEFSGELPESLTNLSA 368

Query: 117 NLTYLDLSLNKLSGLIPERLF-TNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATN 175
           +L  LDLS N  SG I   L       L+ L L +N F GK+ P +S  S L  L L+ N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428

Query: 176 KFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGL 235
             SG IP  +G +S ++ ++L+ N   G+IP  L  +K L+ L L  N L   IP  L  
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

Query: 236 CTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQN 295
           CTNL++++L+ N+L+G +P  +  L  L  L LS+N  SG I A  +G+   L  L +  
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNT 547

Query: 296 NSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGN--QLSGTIPPT 353
           N F G IP  +   +      +  N  +G     I      ++   +GN  +  G     
Sbjct: 548 NLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603

Query: 354 LWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSV 413
           L  L+      +      G   P   +  S++  D++ N L G +P+ I  +  L   ++
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663

Query: 414 FTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPA 473
             N+ SGSIP + G     L  +  S+N   G +P  + +   L E+ ++ NN +G +P 
Sbjct: 664 GHNDISGSIPDEVGDLR-GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

Query: 474 CMRNCSNLNRVRFDGN 489
            M         +F  N
Sbjct: 723 -MGQFETFPPAKFLNN 737

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  343 bits (882), Expect = e-109
 Identities = 141/450 (31%), Positives = 212/450 (47%), Gaps = 18/450 (4%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEM-GDLSELQYLSVYNNSLNGA 59
           LDLS N+  G +PP  G+ S L  L L++N F G +P +    +  L+ L +  N  +G 
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 60  FPFQLSNLR-KVRYLDLGGNFL--ETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCR 116
            P  L+NL   +  LDL  N            +   +L  L L  N  T + P  +  C 
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418

Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNK 176
            L  L LS N LSG IP  L  +L KL  L L  N  +G++   +  +  L  L L  N 
Sbjct: 419 ELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477

Query: 177 FSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLC 236
            +G IP  +   +N+  + L NN  TG+IP  +G+L+NL  L L  N+ +  IP ELG C
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537

Query: 237 TNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNN 296
            +L +L L  N  +G +P ++   S      ++ NF++G+     I N    +      N
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVY-IKNDGMKKECHGAGN 592

Query: 297 --SFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTL 354
              F G    ++  L+      +    + G          S+  LD+S N LSG IP  +
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652

Query: 355 WNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVF 414
            ++  L  L L  N++SG+IP E+G +  L   D+++N+L G +P+ +S L  L +  + 
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712

Query: 415 TNNFSGSIP--GDFGKFSPSLINVSFSNNS 442
            NN SG IP  G F  F P+     F NN 
Sbjct: 713 NNNLSGPIPEMGQFETFPPA----KFLNNP 738

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  320 bits (822), Expect = e-100
 Identities = 127/441 (28%), Positives = 200/441 (45%), Gaps = 20/441 (4%)

Query: 139 NLGKLEYLNLTDNQFQ---GKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVE 195
              K+  ++L+          +S ++  L+ L  L L+ +  +G +       +++  ++
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 196 LFNNSFTGQIPS--SLGQLKNLQHLDLRMNALNSTIPPELGL-CTNLSFLALAMNQLSGG 252
           L  NS +G + +  SLG    L+ L++  N L+       GL   +L  L L+ N +SG 
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 253 LPLSL---SNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLL 309
             +          L  L +S N +SG++    +     LE L + +N+F   I P +G  
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGI-PFLGDC 222

Query: 310 TKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNN 369
           + LQ+L +  N  SG     I   T L+ L++S NQ  G IPP    L +L  L L  N 
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK 280

Query: 370 LSGTIPPEI-GSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGK 428
            +G IP  + G+  +L   D++ N  +G +P        L   ++ +NNFSG +P D   
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340

Query: 429 FSPSLINVSFSNNSFSGELPYELCSGFA-LEELTVNGNNFTGSLPACMRNC--SNLNRVR 485
               L  +  S N FSGELP  L +  A L  L ++ NNF+G +   +     + L  + 
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400

Query: 486 FDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPA 545
              N FTG I         L  + LS N+  G I    G    L +L+L  N + G IP 
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460

Query: 546 ELGNLTRLGVLSLDSNELTGK 566
           EL  +  L  L LD N+LTG+
Sbjct: 461 ELMYVKTLETLILDFNDLTGE 481

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  293 bits (751), Expect = 6e-91
 Identities = 124/595 (20%), Positives = 208/595 (34%), Gaps = 31/595 (5%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L+L+HN +           S LT LD+  N      P     L  L+ L++ +N L+   
Sbjct: 30  LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
               +    +  L L  N ++    + F    +L  L L +N L+       +   NL  
Sbjct: 90  DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149

Query: 121 LDLSLNKLSGLIPERL-FTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSG 179
           L LS NK+  L  E L       L+ L L+ NQ +         +  L  L L   +   
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 180 PIPGDIGL---MSNIQLVELFNNSFTGQIPSSLGQLK--NLQHLDLRMNALNSTIPPELG 234
            +   + L    ++I+ + L N+  +    ++   LK  NL  LDL  N LN        
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269

Query: 235 LCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLI--------GNWT 286
               L +  L  N +      SL  L  +  L L  +F    IS   +            
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329

Query: 287 ELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIG----KLTSLEKLDLS 342
            LE L +++N   G        L  L+YL L  +  S    +         + L  L+L+
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389

Query: 343 GNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPP-EIGSMASLVAFDVNTNQLHGELPEN 401
            N++S         L +L  L L  N +   +   E   + ++    ++ N+       +
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449

Query: 402 ISRLVNLNKFSVFTNNFSG--SIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEE 459
            + + +L +  +         S P  F     +L  +  SNN+ +      L     LE 
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPL-RNLTILDLSNNNIANINDDMLEGLEKLEI 508

Query: 460 LTVNGNNFT--------GSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLS 511
           L +  NN          G     ++  S+L+ +  + N F       F     L  I L 
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568

Query: 512 GNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELG-NLTRLGVLSLDSNELTG 565
            N+     +  +    +L +L L +N I+       G     L  L +  N    
Sbjct: 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  280 bits (718), Expect = 3e-86
 Identities = 120/596 (20%), Positives = 211/596 (35%), Gaps = 37/596 (6%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
            D SH  ++  +P  +   +N+T L+L +N       +     S+L  L V  N+++   
Sbjct: 9   ADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           P     L  ++ L+L  N L       F+   +LT L L  N +     +  +  +NL  
Sbjct: 66  PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQG--KLSPNVSKLSNLTVLRLATNKFS 178
           LDLS N LS          L  L+ L L++N+ Q       ++   S+L  L L++N+  
Sbjct: 126 LDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184

Query: 179 GPIPGDIGLMSNIQLVELFNNSFTGQIPSSLG---QLKNLQHLDLRMNALNSTIPPELGL 235
              PG    +  +  + L N      +   L       ++++L L  + L++T       
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244

Query: 236 C--TNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQI 293
              TNL+ L L+ N L+     S + L +L    L  N +   + ++ +     +  L +
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH-LFSHSLHGLFNVRYLNL 303

Query: 294 QNNSFMGNI---------PPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGN 344
           + +    +I               L  L++L +  N   G   +    L +L+ L LS +
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 345 QLSGTIPP--TLWNLTN--LLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPE 400
             S       T  +L +  L  L L  N +S         +  L   D+  N++  EL  
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 401 N-ISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG--ELPYELCSGFAL 457
                L N+ +  +  N +       F    PSL  +     +       P        L
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALV-PSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 458 EELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFT--------GNITRAFGVHPRLDFIR 509
             L ++ NN        +     L  +    N           G           L  + 
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 510 LSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565
           L  N F       + +   L  + L  N ++    +   N   L  L+L  N +T 
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  247 bits (632), Expect = 9e-74
 Identities = 113/504 (22%), Positives = 181/504 (35%), Gaps = 33/504 (6%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDL--SELQYLSVYNNSLNG 58
           LDLSHN +S         L NL  L L+NN  +     E+     S L+ L + +N +  
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185

Query: 59  AFPFQLSNLRKVRYLDLGGNFLE---TPDWSKFSNMPSLTHLSLCYNELTLEFPSFI--L 113
             P     + ++  L L    L    T          S+ +LSL  ++L+    +    L
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245

Query: 114 TCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLA 173
              NLT LDLS N L+ +  +  F  L +LEY  L  N  Q   S ++  L N+  L L 
Sbjct: 246 KWTNLTMLDLSYNNLNVVGND-SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 174 TN---------KFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA 224
            +                     +  ++ + + +N   G   +    L NL++L L  + 
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 225 LNSTIPPELGLC----TNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISAN 280
            +              + L  L L  N++S     + S L  L  L L  N +  E++  
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 281 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSG--PIPSEIGKLTSLEK 338
                  +  + +  N ++        L+  LQ L L R         PS    L +L  
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484

Query: 339 LDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLS--------GTIPPEIGSMASLVAFDVN 390
           LDLS N ++      L  L  L  L L  NNL+        G     +  ++ L   ++ 
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 391 TNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYE 450
           +N       E    L  L    +  NN +      F     SL +++   N  +      
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ-VSLKSLNLQKNLITSVEKKV 603

Query: 451 LCSGF-ALEELTVNGNNFTGSLPA 473
               F  L EL +  N F  +  +
Sbjct: 604 FGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  222 bits (569), Expect = 9e-65
 Identities = 104/470 (22%), Positives = 173/470 (36%), Gaps = 27/470 (5%)

Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNK 176
           +    D S  KL+  +P+ L TN+     LNLT NQ +   + N ++ S LT L +  N 
Sbjct: 5   SHEVADCSHLKLTQ-VPDDLPTNI---TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 177 FSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLC 236
            S   P     +  ++++ L +N  +     +     NL  L L  N++           
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 237 TNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANL-IGNWTELESLQIQN 295
            NL  L L+ N LS     +   L  L EL LS+N +    S  L I   + L+ L++ +
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 296 NSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIG---KLTSLEKLDLSGNQLSGTIPP 352
           N      P     + +L  LFL        +  ++      TS+  L LS +QLS T   
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 353 TLWNL--TNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLV---- 406
           T   L  TNL  L L +NNL+         +  L  F +  N +      ++  L     
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

Query: 407 -----NLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELT 461
                +  K S+   +        F      L +++  +N   G           L+ L+
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359

Query: 462 VNGNNF-----TGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFI 516
           ++ +       T      + + S L+ +    N+ +   + AF     L+ + L  N   
Sbjct: 360 LSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418

Query: 517 GEISPD-WGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565
            E++   W    N+  + L  NK           +  L  L L    L  
Sbjct: 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  175 bits (447), Expect = 1e-47
 Identities = 77/369 (20%), Positives = 126/369 (34%), Gaps = 19/369 (5%)

Query: 214 NLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFL 273
           + +  D     L + +P +L   TN++ L L  NQL      + +  S+L  L +  N +
Sbjct: 5   SHEVADCSHLKL-TQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 274 SGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKL 333
           S  +   L      L+ L +Q+N             T L  L L  N       +   K 
Sbjct: 62  SK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 334 TSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMA--SLVAFDVNT 391
            +L  LDLS N LS T   T   L NL  L L  N +      E+   A  SL   ++++
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 392 NQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFS--PSLINVSFSNNSFSGELPY 449
           NQ+    P     +  L    +       S+           S+ N+S SN+  S     
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 450 EL--CSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDF 507
                    L  L ++ NN              L     + N      + +      + +
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

Query: 508 IRLSGNHFIGEISP---------DWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSL 558
           + L  +     IS           +   + L +L ++ N I G        L  L  LSL
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

Query: 559 DSNELTGKN 567
            ++  + + 
Sbjct: 361 SNSFTSLRT 369

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  162 bits (413), Expect = 4e-43
 Identities = 63/328 (19%), Positives = 112/328 (34%), Gaps = 16/328 (4%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
             +S  ++      +   L  L  L++ +N   G   +    L  L+YLS+ N+  +   
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 61  P----FQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFP-SFILTC 115
                F       +  L+L  N +   +   FS +  L  L L  NE+  E         
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429

Query: 116 RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQG--KLSPNVSKLSNLTVLRLA 173
            N+  + LS NK   L     F  +  L+ L L     +           L NLT+L L+
Sbjct: 430 ENIFEIYLSYNKYLQLTRN-SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488

Query: 174 TNKFSGPIPGDIGLMSNIQLVELFNNSFT--------GQIPSSLGQLKNLQHLDLRMNAL 225
            N  +      +  +  +++++L +N+          G     L  L +L  L+L  N  
Sbjct: 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548

Query: 226 NSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNW 285
           +            L  + L +N L+       +N   L  L L  N ++          +
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608

Query: 286 TELESLQIQNNSFMGNIPPEIGLLTKLQ 313
             L  L ++ N F          +  + 
Sbjct: 609 RNLTELDMRFNPFDCTCESIAWFVNWIN 636

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  146 bits (371), Expect = 1e-37
 Identities = 60/314 (19%), Positives = 102/314 (32%), Gaps = 10/314 (3%)

Query: 262 RLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNH 321
                  S   L+ ++  +L  N   +  L + +N             ++L  L +  N 
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPTN---ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 322 FSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSM 381
            S   P    KL  L+ L+L  N+LS     T    TNL  L L  N++           
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 382 ASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFS-PSLINVSFSN 440
            +L+  D++ N L         +L NL +  +  N        +   F+  SL  +  S+
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 441 NSFSGELPYELCSGFALEELTVNGNNFTGSLPA---CMRNCSNLNRVRFDGNQFTGNITR 497
           N      P    +   L  L +N      SL          +++  +    +Q +     
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 498 AFG--VHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGV 555
            F       L  + LS N+     +  +     L    L+ N I       L  L  +  
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

Query: 556 LSLDSNELTGKNSY 569
           L+L  +      S 
Sbjct: 301 LNLKRSFTKQSISL 314

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  107 bits (269), Expect = 1e-24
 Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 15/190 (7%)

Query: 1   LDLSHNNISG--PIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLN- 57
           L L    +      P     L NLT LDL+NN         +  L +L+ L + +N+L  
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 518

Query: 58  -------GAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPS 110
                  G   + L  L  +  L+L  N  +      F ++  L  + L  N L     S
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

Query: 111 FILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLS-----PNVSKLS 165
                 +L  L+L  N ++ +  +        L  L++  N F           N    +
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINET 638

Query: 166 NLTVLRLATN 175
           +  +  L+++
Sbjct: 639 HTNIPELSSH 648

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  266 bits (683), Expect = 1e-81
 Identities = 95/594 (15%), Positives = 174/594 (29%), Gaps = 85/594 (14%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEG----SIPSEMGDLSELQYLSVYNNSL 56
           L L     SG +P AIG L+ L  L L ++  +       P  +      +         
Sbjct: 86  LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHY 145

Query: 57  NGAFPFQLSNLR--KVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILT 114
              F           +    +  +  +             T +    N +T      ++ 
Sbjct: 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMR 204

Query: 115 CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLAT 174
              L    +  +                 E  N    Q           L +LT + +  
Sbjct: 205 LTKLRQFYMGNSPFVAENICEA------WENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258

Query: 175 NKFSGPIPGDIGLMSNIQLVELFNNSFT--------GQIPSSLGQLKNLQHLDLRMNALN 226
                 +P  +  +  +QL+ +  N            Q  +     + +Q + +  N L 
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318

Query: 227 S-TIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNW 285
           +  +   L     L  L    NQL G LP +  +  +L  L L+ N ++  I AN  G  
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFT 376

Query: 286 TELESLQIQNNSFMGNIPP--EIGLLTKLQYLFLYRNHFSG-------PIPSEIGKLTSL 336
            ++E+L   +N     IP   +   ++ +  +    N           P+     K  ++
Sbjct: 377 EQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435

Query: 337 EKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHG 396
             ++LS NQ+S          + L S+ L  N L+  IP                     
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLK---------------- 478

Query: 397 ELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFA 456
           +  EN      L    +  N  +           P L+ +  S NSFS   P +  +   
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSST 537

Query: 457 LEELTVN------GNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRL 510
           L+   +       GN      P  +  C +L +++   N                     
Sbjct: 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK----------------- 580

Query: 511 SGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT 564
                  +I        N+S L +  N       + +      G+  L  ++  
Sbjct: 581 ----VNEKI------TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  261 bits (668), Expect = 3e-79
 Identities = 88/576 (15%), Positives = 182/576 (31%), Gaps = 51/576 (8%)

Query: 2   DLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNG--- 58
           +   +        ++ +   +T L L      G +P  +G L+EL+ L++ ++       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 59  -AFPFQLSNLRKVRYLDLGGNFLET--PDWSKFSNMPSLTHLSLCYNELTLEFPSFILTC 115
              P  +S               +    D+    +   L    +  +             
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 116 RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATN 175
              T +    N ++ +        L KL    + ++ F  +      +  N    +    
Sbjct: 183 LKDTQIGQLSNNITFVSKA--VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ--- 237

Query: 176 KFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNS-------- 227
                       + ++  VE++N     ++P+ L  L  +Q +++  N   S        
Sbjct: 238 --YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW 295

Query: 228 TIPPELGLCTNLSFLALAMNQLSGG-LPLSLSNLSRLNELGLSDNFLSGEISANLIGNWT 286
               +  +   +  + +  N L    +  SL  + +L  L    N L G++ A   G+  
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA--FGSEI 353

Query: 287 ELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNHFSG-PIPSEIGKLTSLEKLDLSGN 344
           +L SL +  N     IP    G   +++ L    N     P   +   ++ +  +D S N
Sbjct: 354 KLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN 412

Query: 345 QLSG-------TIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHG- 396
           ++          + PT +   N+ S+ L  N +S        + + L + ++  N L   
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472

Query: 397 ------ELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYE 450
                 +  EN      L    +  N  +           P L+ +  S NSFS   P +
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ 531

Query: 451 LCSGFALEELTVN------GNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPR 504
             +   L+   +       GN      P  +  C +L +++   N     +       P 
Sbjct: 532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKIT--PN 588

Query: 505 LDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS 540
           +  + +  N  I                 L  +K  
Sbjct: 589 ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  246 bits (629), Expect = 1e-73
 Identities = 85/549 (15%), Positives = 165/549 (30%), Gaps = 50/549 (9%)

Query: 53  NNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFI 112
           N S  G      +N    + LD+ G           ++   +T LSL     +   P  I
Sbjct: 46  NWSQQGFGTQPGANWNFNKELDMWGAQPGV----SLNSNGRVTGLSLEGFGASGRVPDAI 101

Query: 113 LTCRNLTYLDLSLNKLSGLIPERLFTNLG---KLEYLNLTDNQFQGKLSPNVSKL--SNL 167
                L  L L  +             +      E        +Q        +   S+L
Sbjct: 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161

Query: 168 TVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNS 227
               + ++     I     +      +   +N+ T  +  ++ +L  L+   +  +   +
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVA 220

Query: 228 TIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTE 287
               E     N  +      Q      L   NL  L ++ + +     ++    +    E
Sbjct: 221 ENICEAWENENSEY-----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPE 274

Query: 288 LESLQIQNNSFM--------GNIPPEIGLLTKLQYLFLYRNHF-SGPIPSEIGKLTSLEK 338
           ++ + +  N  +             +  +  K+Q +++  N+  + P+ + + K+  L  
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM 334

Query: 339 LDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL 398
           L+   NQL G   P   +   L SL L +N ++       G    +       N+L   +
Sbjct: 335 LECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YI 392

Query: 399 PEN--ISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLIN------VSFSNNSFSGELPYE 450
           P       +  ++      N        +F    P+         ++ SNN  S      
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

Query: 451 LCSGFALEELTVNGNNFTG-------SLPACMRNCSNLNRVRFDGNQFTGNI-TRAFGVH 502
             +G  L  + + GN  T              +N   L  +    N+ T           
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512

Query: 503 PRLDFIRLSGNHFIGEISPDWGECRNL------SNLQLDRNKISGGIPAELGNLTRLGVL 556
           P L  I LS N F  +          L      +      N+     P  +     L  L
Sbjct: 513 PYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571

Query: 557 SLDSNELTG 565
            + SN++  
Sbjct: 572 QIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  110 bits (278), Expect = 8e-26
 Identities = 32/278 (11%), Positives = 79/278 (28%), Gaps = 31/278 (11%)

Query: 289 ESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSG 348
           ++L  +N S  G            + L    + +       +     +  L L G   SG
Sbjct: 40  DALNGKNWSQQGFGTQPGANWNFNKEL----DMWGAQPGVSLNSNGRVTGLSLEGFGASG 95

Query: 349 TIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNL 408
            +P  +  LT L  L L  +                              P+ IS  ++ 
Sbjct: 96  RVPDAIGQLTELEVLALGSHGEKVNERLFG--------------------PKGISANMSD 135

Query: 409 NKFSVFTNNFSGSIPGDFGKFS-PSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNF 467
            +      ++  +      +     LI    +++     +           ++    NN 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 468 TGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECR 527
           T  +   +   + L +     + F          +   ++ +             W   +
Sbjct: 196 T-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-----EDLKWDNLK 249

Query: 528 NLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565
           +L+++++        +P  L  L  + ++++  N    
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 16/142 (11%), Positives = 40/142 (28%), Gaps = 7/142 (4%)

Query: 432 SLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTG----SLPACMRNCSNLNRVRFD 487
            +  +S      SG +P  +     LE L +  +          P  +    +  + +  
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 488 GNQFTGNITRAFG--VHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPA 545
              +               L    ++ +     I          + +    N I+  +  
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK 200

Query: 546 ELGNLTRLGVLSLDSNELTGKN 567
            +  LT+L    + ++    +N
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAEN 222

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  261 bits (669), Expect = 9e-80
 Identities = 109/571 (19%), Positives = 196/571 (34%), Gaps = 32/571 (5%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           LDLS N +      +  +   L  LDL+    +         LS L  L +  N +    
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELT-LEFPSFILTCRNLT 119
               S L  ++ L      L + +     ++ +L  L++ +N +   + P +     NL 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEY----LNLTDNQFQGKLSPNVSKLSNLTVLRLATN 175
           +LDLS NK+  +        L ++      L+L+ N     + P   K   L  L L  N
Sbjct: 153 HLDLSSNKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNN 210

Query: 176 KFSGPIPGDIGL-MSNIQLVELFNNSFTGQ------IPSSLGQLKNLQHLDLRMNALN-- 226
             S  +       ++ +++  L    F  +        S+L  L NL   + R+  L+  
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 227 -STIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNW 285
              I       TN+S  +L    +        S       L L +           + + 
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQ-FPTLKLKSL 327

Query: 286 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNH--FSGPIPSEIGKLTSLEKLDLSG 343
             L     +     G        L  L++L L RN   F G         TSL+ LDLS 
Sbjct: 328 KRLTFTSNK-----GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 344 NQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI 402
           N +  T+      L  L  L    +NL       +  S+ +L+  D++            
Sbjct: 383 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 403 SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTV 462
           + L +L    +  N+F  +   D      +L  +  S        P    S  +L+ L +
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 463 NGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPR-LDFIRLSGNHFIGEISP 521
           + NNF        +  ++L  + +  N    +  +     P  L F+ L+ N F      
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

Query: 522 DW--GECRNLSNLQLDRNKISGGIPAELGNL 550
                  ++   L ++  ++    P++   +
Sbjct: 562 QSFLQWIKDQRQLLVEVERMECATPSDKQGM 592

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  236 bits (603), Expect = 3e-70
 Identities = 109/570 (19%), Positives = 189/570 (33%), Gaps = 32/570 (5%)

Query: 14  PAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYL 73
           P +  + N+T+  +  N +   IP  +      + L +  N L     +   +  +++ L
Sbjct: 2   PCVEVVPNITYQCMELNFY--KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVL 57

Query: 74  DLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIP 133
           DL    ++T +   + ++  L+ L L  N +            +L  L      L+ L  
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117

Query: 134 ERLFTNLGKLEYLNLTDNQFQG-KLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQ 192
                +L  L+ LN+  N  Q  KL    S L+NL  L L++NK       D+ ++  + 
Sbjct: 118 F-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 193 LVE----LFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGL-CTNLSFLALAMN 247
           L+     L  N      P +  ++  L  L LR N  +  +          L    L + 
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 248 QLSGGLPL------SLSNLSRLN--ELGLSDNFLSGEISANLIGNWTELESLQIQNNSFM 299
           +      L      +L  L  L   E  L+      +   +L    T + S  + + +  
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI- 294

Query: 300 GNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTN 359
                +       Q+L L    F      ++  L  L      G         +  +L +
Sbjct: 295 -ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPS 348

Query: 360 LLSLQLFFNNLS--GTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNN 417
           L  L L  N LS  G          SL   D++ N +   +  N   L  L       +N
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN 407

Query: 418 FSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPAC-MR 476
                         +LI +  S+               +LE L + GN+F  +       
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 477 NCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDR 536
              NL  +     Q       AF     L  + +S N+F    +  +    +L  L    
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527

Query: 537 NKISGGIPAELGNL-TRLGVLSLDSNELTG 565
           N I      EL +  + L  L+L  N+   
Sbjct: 528 NHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  233 bits (598), Expect = 1e-72
 Identities = 74/276 (26%), Positives = 124/276 (44%), Gaps = 9/276 (3%)

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQG--KLSPNVSKLSNLTVLRLA-TNKF 177
            D       G++ +   T   ++  L+L+         +  +++ L  L  L +   N  
Sbjct: 31  TDCCNRTWLGVLCDTD-TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 178 SGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCT 237
            GPIP  I  ++ +  + + + + +G IP  L Q+K L  LD   NAL+ T+PP +    
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 238 NLSFLALAMNQLSGGLPLSLSNLSRLNE-LGLSDNFLSGEISANLIGNWTELESLQIQNN 296
           NL  +    N++SG +P S  + S+L   + +S N L+G+I      N   L  + +  N
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRN 207

Query: 297 SFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWN 356
              G+     G     Q + L +N  +  +   +G   +L  LDL  N++ GT+P  L  
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 357 LTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTN 392
           L  L SL + FNNL G I P+ G++          N
Sbjct: 267 LKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  204 bits (522), Expect = 1e-61
 Identities = 78/271 (28%), Positives = 122/271 (45%), Gaps = 9/271 (3%)

Query: 247 NQLSGGLPLSLSNLSRLNELGLSDNFLSGE--ISANLIGNWTELESLQIQN-NSFMGNIP 303
               G L  + +   R+N L LS   L     I ++ + N   L  L I   N+ +G IP
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIP 94

Query: 304 PEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSL 363
           P I  LT+L YL++   + SG IP  + ++ +L  LD S N LSGT+PP++ +L NL+ +
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 364 QLFFNNLSGTIPPEIGSMASLVAF-DVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSI 422
               N +SG IP   GS + L     ++ N+L G++P   + L NL    +  N   G  
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDA 213

Query: 423 PGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLN 482
              FG    +   +  + NS + +L  ++     L  L +  N   G+LP  +     L+
Sbjct: 214 SVLFGSDK-NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 483 RVRFDGNQFTGNITRAFGVHPRLDFIRLSGN 513
            +    N   G I    G   R D    + N
Sbjct: 272 SLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  201 bits (513), Expect = 3e-60
 Identities = 75/281 (26%), Positives = 125/281 (44%), Gaps = 8/281 (2%)

Query: 284 NWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSG--PIPSEIGKLTSLEKLDL 341
           +W    +    N +++G +        ++  L L   +     PIPS +  L  L  L +
Sbjct: 26  SWLP--TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI 83

Query: 342 SG-NQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPE 400
            G N L G IPP +  LT L  L +   N+SG IP  +  + +LV  D + N L G LP 
Sbjct: 84  GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143

Query: 401 NISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEEL 460
           +IS L NL   +   N  SG+IP  +G FS    +++ S N  +G++P    +   L  +
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFV 202

Query: 461 TVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEIS 520
            ++ N   G       +  N  ++    N    ++ +  G+   L+ + L  N   G + 
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP 261

Query: 521 PDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSN 561
               + + L +L +  N + G IP + GNL R  V +  +N
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  200 bits (512), Expect = 4e-60
 Identities = 78/381 (20%), Positives = 122/381 (32%), Gaps = 106/381 (27%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGS--IPSEMGDLSELQYLSVYN-NSLN 57
            D  +    G +         +  LDL+         IPS + +L  L +L +   N+L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 58  GAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRN 117
           G  P  ++ L                                                  
Sbjct: 91  GPIPPAIAKL------------------------------------------------TQ 102

Query: 118 LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKF 177
           L YL ++   +SG IP+ L                         S++  L  L  + N  
Sbjct: 103 LHYLYITHTNVSGAIPDFL-------------------------SQIKTLVTLDFSYNAL 137

Query: 178 SGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNL-QHLDLRMNALNSTIPPELGLC 236
           SG +P  I  + N+  +    N  +G IP S G    L   + +  N L   IPP     
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197

Query: 237 TNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNN 296
            NL+F+ L+ N L G   +   +     ++ L+ N L+ ++                   
Sbjct: 198 -NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL------------------- 237

Query: 297 SFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWN 356
                   ++GL   L  L L  N   G +P  + +L  L  L++S N L G I P   N
Sbjct: 238 -------GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGN 289

Query: 357 LTNLLSLQLFFNN-LSGTIPP 376
           L          N  L G+  P
Sbjct: 290 LQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 99.5 bits (249), Expect = 3e-23
 Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 5/155 (3%)

Query: 416 NNFSGSIPGDFGKFSPSLINVSFSNNSFSGE--LPYELCSGFALEELTV-NGNNFTGSLP 472
             + G +     + +  + N+  S  +      +P  L +   L  L +   NN  G +P
Sbjct: 36  RTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 473 ACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNL 532
             +   + L+ +       +G I         L  +  S N   G + P      NL  +
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 533 QLDRNKISGGIPAELGNLTRLG-VLSLDSNELTGK 566
             D N+ISG IP   G+ ++L   +++  N LTGK
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  233 bits (597), Expect = 3e-69
 Identities = 97/535 (18%), Positives = 172/535 (32%), Gaps = 17/535 (3%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L+ S N +          L NLTFLDL                  L  L +  N L    
Sbjct: 38  LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
              LS  + +++L      + + D+    N  +L  L L  N ++            L  
Sbjct: 98  ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157

Query: 121 LDLSLNKLSGLIPERLFTNLGKLE--YLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFS 178
           LD   N +  L  E   ++L +     LNL  N   G + P     +    L     +  
Sbjct: 158 LDFQNNAIHYLSKE-DMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNL 215

Query: 179 GPIPGDIGL--MSNIQLVELFNNSFTGQIPSSLGQLK--NLQHLDLRMNALNSTIPPELG 234
             I   +    + ++ L    +       P+    L   +++ ++L+ +   +       
Sbjct: 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH 275

Query: 235 LCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQ 294
             + L  L L    LS  LP  L  LS L +L LS N     +      N+  L  L I+
Sbjct: 276 CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIK 333

Query: 295 NNSFMGNIPPE-IGLLTKLQYLFLYRNH--FSGPIPSEIGKLTSLEKLDLSGNQLSGTIP 351
            N+    +    +  L  L+ L L  +    S     ++  L+ L+ L+LS N+      
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393

Query: 352 PTLWNLTNLLSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENISRLVNLNK 410
                   L  L L F  L          ++  L   +++ + L     +    L  L  
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453

Query: 411 FSVFTNNFSGSIPGDFGKFS--PSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFT 468
            ++  N+F                L  +  S    S    +   S   +  + ++ N  T
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

Query: 469 GSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDW 523
            S    + +   +  +    N  +  +     +  +   I L  N      S  +
Sbjct: 514 SSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY 567

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  231 bits (590), Expect = 3e-68
 Identities = 96/575 (16%), Positives = 181/575 (31%), Gaps = 40/575 (6%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
            +  +  ++  IP  +   ++   L+ + N+      +    L  L +L +    +    
Sbjct: 17  YNCENLGLNE-IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
                +  ++  L L  N L     +  S   +L HL      ++      +   + L  
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           L L  N +S +          KL+ L+  +N        ++S L   T L L        
Sbjct: 134 LYLGSNHISSIKLP-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL-------- 184

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCT--N 238
                          L  N   G I          Q L+         I   L   T  +
Sbjct: 185 --------------NLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

Query: 239 LSFLALAMNQLSGGLPLSLSNLSRLN--ELGLSDNFLSGEISANLIGNWTELESLQIQNN 296
           L              P     L  ++   + L  ++    IS+N    ++ L+ L +   
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTAT 288

Query: 297 SFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPP-TLW 355
                +P  +  L+ L+ L L  N F            SL  L + GN     +    L 
Sbjct: 289 HL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347

Query: 356 NLTNLLSLQLFFNNL--SGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSV 413
           NL NL  L L  +++  S     ++ +++ L + +++ N+      E       L    +
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407

Query: 414 FTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTG---S 470
                         +    L  ++ S++              AL+ L + GN+F      
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

Query: 471 LPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLS 530
               ++    L  +       +     AF     ++ + LS N             + + 
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY 527

Query: 531 NLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565
            L L  N IS  +P+ L  L++   ++L  N L  
Sbjct: 528 -LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  130 bits (329), Expect = 2e-32
 Identities = 63/334 (18%), Positives = 97/334 (29%), Gaps = 16/334 (4%)

Query: 238 NLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNS 297
           N   L L  N++ G LP S   L        S N L   I          L  L +    
Sbjct: 18  NCENLGL--NEIPGTLPNSTECLE------FSFNVLP-TIQNTTFSRLINLTFLDLTRCQ 68

Query: 298 FMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNL 357
                        +L  L L  N       + +    +L+ L      +S      L N 
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128

Query: 358 TNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSV-FTN 416
             L SL L  N++S    P+      L   D   N +H    E++S L      S+    
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 417 NFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYEL--CSGFALEELTVNGNNFTGSLPAC 474
           N    I            +++F        +   L   +  +L   T    +     PA 
Sbjct: 189 NDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 475 MRNCSNLNRVRFD--GNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNL 532
                 ++    +   + F    +  F     L  + L+  H + E+         L  L
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKL 306

Query: 533 QLDRNKISGGIPAELGNLTRLGVLSLDSNELTGK 566
            L  NK          N   L  LS+  N    +
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  230 bits (588), Expect = 3e-66
 Identities = 89/598 (14%), Positives = 178/598 (29%), Gaps = 72/598 (12%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           LD  +               N  F +   +++      ++ +   +  LS+      G  
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWNF-NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPS-FILTCRNLT 119
           P  +  L +++ L  G +              +        + + + +   F+   + L 
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399

Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQG------KLSPNVSKLSNLTVLRLA 173
             DL  + ++          + K   ++L D Q          +S  + +L+ L ++  A
Sbjct: 400 LSDLLQDAINRN---PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFA 456

Query: 174 TNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPEL 233
            + F+          +N                 S   LK+L  ++L      + +P  L
Sbjct: 457 NSPFTYDNIAVDWEDAN-----SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511

Query: 234 GLCTNLSFLALAMNQLSG---------GLPLSLSNLSRLNELGLSDNFLSGEISANLIGN 284
                L  L +A N+             L        ++    +  N L    ++  +  
Sbjct: 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK 571

Query: 285 WTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGK-LTSLEKLDLSG 343
             +L  L   +N          G   KL  L L  N     IP +       +E L  S 
Sbjct: 572 MVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSH 628

Query: 344 NQLSGTIPPT--LWNLTNLLSLQLFFNNLSGTIPPEIGS------MASLVAFDVNTNQLH 395
           N+L   IP      ++  + S+   +N +       I          +     ++ N++ 
Sbjct: 629 NKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQ 686

Query: 396 GELPENISRLVNL-------NKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELP 448
               E  +    +       N  +    N      G++   +  L  +    N  +  L 
Sbjct: 687 KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN-TYLLTTIDLRFNKLT-SLS 744

Query: 449 YELCSGF--ALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLD 506
            +  +     L  + V+ N F+ S P    N S L        +                
Sbjct: 745 DDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRD--------------- 788

Query: 507 FIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT 564
                GN  + +       C +L  LQ+  N I   +  +L    +L +L +  N   
Sbjct: 789 ---AEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  208 bits (531), Expect = 2e-58
 Identities = 72/419 (17%), Positives = 128/419 (30%), Gaps = 48/419 (11%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNG-- 58
            +  +         +   L +LT ++L N      +P  + DL ELQ L++  N      
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 59  -------AFPFQLSNLRKVRYLDLGGNFLET-PDWSKFSNMPSLTHLSLCYNELTLEFPS 110
                            K++   +G N LE  P  +    M  L  L   +N++     +
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA 590

Query: 111 FILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSP-NVSKLSNLTV 169
           F  T   LT L L  N++   IPE       ++E L  + N+ +   +  N   +  +  
Sbjct: 591 FG-TNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648

Query: 170 LRLATNKFSG-----PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA 224
           +  + NK            D     N   V L  N               +  + L  N 
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 225 LNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGN 284
           + ++IP                         +  N   L  + L  N L+          
Sbjct: 709 M-TSIPENSL----------------KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751

Query: 285 WTELESLQIQNNSFMGNIPPEIGLLTKLQYL------FLYRNHFSGPIPSEIGKLTSLEK 338
              L ++ +  N F  + P +    ++L+            N      P+ I    SL +
Sbjct: 752 LPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810

Query: 339 LDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNL-SGTIPPEIGSM-ASLVAFDVNTNQLH 395
           L +  N +   +   L     L  L +  N   S  +      + A +     +  Q  
Sbjct: 811 LQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  166 bits (421), Expect = 8e-44
 Identities = 56/437 (12%), Positives = 116/437 (26%), Gaps = 73/437 (16%)

Query: 199 NSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLS 258
           + +  Q    L     +  L L        +P  +G  T L  L+   +  +    L   
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 259 NLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLY 318
                +      + +        +     L    +  ++   N  PE+  + K   + L 
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLK 426

Query: 319 RNHFSG------PIPSEIGKLTSLEKLDLSGNQLSG-------------------TIPPT 353
                        I   I +LT L+ +  + +  +                        +
Sbjct: 427 DTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486

Query: 354 LWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHG---------ELPENISR 404
             NL +L  ++L+       +P  +  +  L + ++  N+             L ++   
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT 546

Query: 405 LVNLNKFSVFTNNFSG-SIPGDFGKFS---------------------PSLINVSFSNNS 442
              +  F +  NN           K                         L ++    N 
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ 606

Query: 443 FSGELPYELCSGF-ALEELTVNGNNFTGSLPAC-MRNCSNLNRVRFDGNQFTGNITRAFG 500
              E+P + C+    +E L  + N           ++   +  V F  N+          
Sbjct: 607 IE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 501 VHP-----RLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS-------GGIPAELG 548
                       + LS N      +  +     +S + L  N ++               
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 549 NLTRLGVLSLDSNELTG 565
           N   L  + L  N+LT 
Sbjct: 726 NTYLLTTIDLRFNKLTS 742

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  126 bits (319), Expect = 8e-31
 Identities = 45/283 (15%), Positives = 85/283 (30%), Gaps = 27/283 (9%)

Query: 1   LDLSHNNISGPIPPAIGT-LSNLTFLDLNNNLFEGSIPS--EMGDLSELQYLSVYNNSL- 56
           L L +N I   IP         +  L  ++N  +  IP+      +  +  +    N + 
Sbjct: 600 LKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIG 657

Query: 57  ----NGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELT------- 105
               N +             + L  N ++      F+    ++ + L  N +T       
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717

Query: 106 LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLS 165
                       LT +DL  NKL+ L  +   T L  L  ++++ N F           S
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS 776

Query: 166 NLTVLRL------ATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLD 219
            L    +        N+     P  I    ++  +++ +N     +   L     L  LD
Sbjct: 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILD 833

Query: 220 LRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSR 262
           +  N   S     +          L  ++           + R
Sbjct: 834 IADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIER 876

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  214 bits (548), Expect = 3e-62
 Identities = 99/531 (18%), Positives = 177/531 (33%), Gaps = 26/531 (4%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           +DLS N +      +    S L +LDL+    E         L  L  L +  N +    
Sbjct: 37  IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELT-LEFPSFILTCRNLT 119
           P   S L  +  L      L + +      + +L  L++ +N +   + P++     NL 
Sbjct: 97  PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156

Query: 120 YLDLSLNKLSGLIPE---RLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNK 176
           ++DLS N +  +       L  N      L+++ N     +     +   L  L L  N 
Sbjct: 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNF 215

Query: 177 FSGPIPGDIGL-MSNIQLVELFNNSFTGQI------PSSLGQLKNLQHLDLRMNALNST- 228
            S  I       ++ + +  L    F  +       PS +  L ++   + R+   N   
Sbjct: 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275

Query: 229 -IPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTE 287
               +     N+S ++LA   +       +    +   L +    L    + +L      
Sbjct: 276 DDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDL----PF 329

Query: 288 LESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFS--GPIPSEIGKLTSLEKLDLSGNQ 345
           L+SL +  N   G+I  +   L  L YL L RN  S  G          SL  LDLS N 
Sbjct: 330 LKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387

Query: 346 LSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPE-IGSMASLVAFDVNTNQLHGELPENISR 404
               +      L  L  L    + L          S+  L+  D++      +       
Sbjct: 388 AI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446

Query: 405 LVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNG 464
           L +LN   +  N+F  +   +    + +L  +  S             +   L+ L ++ 
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506

Query: 465 NNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHF 515
           NN      +      +L+ +    N+   +          L F  L+ N  
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  206 bits (525), Expect = 5e-59
 Identities = 101/575 (17%), Positives = 179/575 (31%), Gaps = 43/575 (7%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
                  +S  +P  I   S+   +DL+ N  +        + SELQ+L +    +    
Sbjct: 16  YQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
                 L  +  L L GN +++     FS + SL +L     +L       I     L  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           L+++ N +        F+NL  L +++L+ N  Q     ++  L     + L+ +     
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD----- 187

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGL-CTNL 239
                          +  N     I     Q   L  L LR N  +S I          L
Sbjct: 188 ---------------MSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGL 231

Query: 240 SFLALAMNQLSGGLPLS------LSNLSRLNELGLSDNFLSG-EISANLIGNWTELESLQ 292
               L + +      L       +  L  +        + +              + ++ 
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291

Query: 293 IQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPP 352
           +   S       ++    K Q L + R             L  L+ L L+ N+ S  I  
Sbjct: 292 LAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGS--ISF 344

Query: 353 TLWNLTNLLSLQLFFNNLSGTIP--PEIGSMASLVAFDVNTNQLHGELPENISRLVNLNK 410
               L +L  L L  N LS +           SL   D++ N     +  N   L  L  
Sbjct: 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQH 403

Query: 411 FSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGS 470
                +                L+ +  S  +   +         +L  L + GN+F  +
Sbjct: 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463

Query: 471 LPACM-RNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNL 529
             + +  N +NL  +     Q        F    RL  + +S N+ +   S  + +  +L
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523

Query: 530 SNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT 564
           S L    N+I             L   +L +N + 
Sbjct: 524 STLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  194 bits (495), Expect = 8e-55
 Identities = 101/571 (17%), Positives = 173/571 (30%), Gaps = 52/571 (9%)

Query: 10  GPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRK 69
           G + P I  + N+T+  ++  L    +P ++   S  + + +  N L     +  SN  +
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLS--KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 70  VRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLS 129
           +++LDL    +ET +   +  +  L++L L  N +    P       +L  L     KL+
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 130 GLIPERLFTNLGKLEYLNLTDNQFQG-KLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLM 188
            L        L  L+ LN+  N     KL    S L+NL  + L+ N        D+  +
Sbjct: 118 SLESF-PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 189 SNIQLVE----LFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGL-CTNLSFLA 243
                V     +  N     I     Q   L  L LR N  +S I          L    
Sbjct: 177 RENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 244 LAMNQLSGGLPLS------LSNLSRLNELGLSDNFLSG-EISANLIGNWTELESLQIQNN 296
           L + +      L       +  L  +        + +              + ++ +   
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

Query: 297 SFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWN 356
           S       ++    K Q L + R             L  L+ L L+ N+ S  I      
Sbjct: 296 SI--KYLEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGS--ISFKKVA 348

Query: 357 LTNLLSLQLFFNNLSGTIP--PEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVF 414
           L +L  L L  N LS +           SL   D++ N     +  N   L  L      
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQ 407

Query: 415 TNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPAC 474
            +                L+ +  S  +   +         +L  L + GN+F  +  + 
Sbjct: 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467

Query: 475 MRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQL 534
                                   F     L F+ LS           +     L  L +
Sbjct: 468 -----------------------VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504

Query: 535 DRNKISGGIPAELGNLTRLGVLSLDSNELTG 565
             N +     +    L  L  L    N +  
Sbjct: 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  125 bits (316), Expect = 1e-30
 Identities = 46/232 (19%), Positives = 90/232 (38%), Gaps = 8/232 (3%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPS--EMGDLSELQYLSVYNNSLNG 58
           L L+ N  S  I      L +L++LDL+ N    S          + L++L +  N    
Sbjct: 333 LTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII 390

Query: 59  AFPFQLSNLRKVRYLDLGGNFLET-PDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRN 117
                   L ++++LD   + L+   ++S F ++  L +L + Y    ++F    L   +
Sbjct: 391 -MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 118 LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNK 176
           L  L ++ N         +F N   L +L+L+  Q +  +S  V   L  L +L ++ N 
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHNN 508

Query: 177 FSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNST 228
                      + ++  ++   N             K+L   +L  N++   
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 83.5 bits (207), Expect = 4e-17
 Identities = 50/274 (18%), Positives = 83/274 (30%), Gaps = 34/274 (12%)

Query: 300 GNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTN 359
           G++ P I ++  + Y  + +      +P +I   +S + +DLS N L      +  N + 
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLSK--VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 360 LLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFS 419
           L  L L    +          +  L    +  N +    P + S L +L          +
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 420 GSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCS 479
                  G+   +L  ++ ++N                             LPA   N +
Sbjct: 118 SLESFPIGQL-ITLKKLNVAHNFIHS-----------------------CKLPAYFSNLT 153

Query: 480 NLNRVRFDGNQFTGNITRAFGVHPRLDF----IRLSGNHFIGEISPDWGECRNLSNLQLD 535
           NL  V    N                      + +S N  I  I     +   L  L L 
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQAFQGIKLHELTLR 212

Query: 536 RNKISGGIPAE-LGNLTRLGVLSLDSNELTGKNS 568
            N  S  I    L NL  L V  L   E   + +
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  179 bits (455), Expect = 3e-50
 Identities = 117/448 (26%), Positives = 183/448 (40%), Gaps = 37/448 (8%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L      I       +  L+NLT ++ +NN      P  + +L++L  + + NN +    
Sbjct: 51  LQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT 106

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           P  L+NL  +  L L  N +   D     N+ +L  L L  N ++    S +    +L  
Sbjct: 107 P--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS--DISALSGLTSLQQ 160

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           L    N+++ L P     NL  LE L+++ N+        ++KL+NL  L    N+ S  
Sbjct: 161 LSFG-NQVTDLKP---LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 214

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
            P  +G+++N+  + L  N        +L  L NL  LDL  N +++  P  L   T L+
Sbjct: 215 TP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268

Query: 241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 300
            L L  NQ+S      L+ L+ L  L L++N L        I N   L  L +  N+   
Sbjct: 269 ELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISD 323

Query: 301 NIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNL 360
             P  +  LTKLQ LF Y N  S    S +  LT++  L    NQ+S   P  L NLT +
Sbjct: 324 ISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRI 377

Query: 361 LSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSG 420
             L L     +   P    +  S+     N        P  IS   +  +  + T N   
Sbjct: 378 TQLGLNDQAWT-NAPVNYKANVSIPNTVKNVTGAL-IAPATISDGGSYTEPDI-TWNLPS 434

Query: 421 SIPGDFGKFSPSLINVSFSNNSFSGELP 448
                   FS   + +     +FSG + 
Sbjct: 435 YTNEVSYTFS-QPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  175 bits (447), Expect = 3e-49
 Identities = 97/496 (19%), Positives = 187/496 (37%), Gaps = 40/496 (8%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
             ++ +     I      L+      L       ++     DL ++  L      +    
Sbjct: 6   ATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS-- 60

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
              +  L  +  ++   N L     +   N+  L  + +  N++     + +    NLT 
Sbjct: 61  IDGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTG 116

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           L L  N+++ + P     NL  L  L L+ N         +S L++L  L    N+ +  
Sbjct: 117 LTLFNNQITDIDP---LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDL 170

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
            P  +  ++ ++ +++ +N  +    S L +L NL+ L    N ++   P  LG+ TNL 
Sbjct: 171 KP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLD 224

Query: 241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 300
            L+L  NQL      +L++L+ L +L L++N +S       +   T+L  L++  N    
Sbjct: 225 ELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISN 279

Query: 301 NIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNL 360
             P  +  LT L  L L  N      P  I  L +L  L L  N +S   P  + +LT L
Sbjct: 280 ISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL 333

Query: 361 LSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSG 420
             L  + N +S      + ++ ++       NQ+       ++ L  + +  +    ++ 
Sbjct: 334 QRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTN 389

Query: 421 SIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSN 480
           +        S   I  +  N + +   P  +  G +  E  +  N  +          S 
Sbjct: 390 APVNYKANVS---IPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQ 445

Query: 481 LNRVRFDGNQFTGNIT 496
              +      F+G +T
Sbjct: 446 PVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 89.3 bits (222), Expect = 4e-19
 Identities = 62/284 (21%), Positives = 113/284 (39%), Gaps = 24/284 (8%)

Query: 282 IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDL 341
                E     +   +    +      L ++  L   R          +  L +L +++ 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINF 75

Query: 342 SGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPEN 401
           S NQL+   P  L NLT L+ + +  N ++      + ++ +L    +  NQ+     + 
Sbjct: 76  SNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDP 129

Query: 402 ISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELT 461
           +  L NLN+  + +N  S            SL  +SF N   +   P    +   LE L 
Sbjct: 130 LKNLTNLNRLELSSNTISDISA--LSGL-TSLQQLSFGNQ-VTDLKPLANLT--TLERLD 183

Query: 462 VNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISP 521
           ++ N  +    + +   +NL  +    NQ +       G+   LD + L+GN  + +I  
Sbjct: 184 ISSNKVSD--ISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQ-LKDIGT 238

Query: 522 DWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565
                 NL++L L  N+IS   P  L  LT+L  L L +N+++ 
Sbjct: 239 -LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  173 bits (442), Expect = 2e-49
 Identities = 90/371 (24%), Positives = 153/371 (41%), Gaps = 29/371 (7%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L      I+   P     L+      L        +     +L  +  L V    +    
Sbjct: 5   LATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQ 60

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
              +  L  + YL+L GN +     S  SN+  LT+L +  N++T    S +    NL  
Sbjct: 61  G--IEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITD--ISALQNLTNLRE 114

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           L L+ + +S + P     NL K+  LNL  N     LSP +S ++ L  L +  +K    
Sbjct: 115 LYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDV 170

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
            P  I  ++++  + L  N      P  L  L +L +    +N +    P  +   T L+
Sbjct: 171 TP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLN 224

Query: 241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 300
            L +  N+++      L+NLS+L  L +  N +S  I+A  + + T+L+ L + +N    
Sbjct: 225 SLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD-INA--VKDLTKLKMLNVGSNQI-- 277

Query: 301 NIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNL 360
           +    +  L++L  LFL  N         IG LT+L  L LS N ++   P  L +L+ +
Sbjct: 278 SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335

Query: 361 LSLQLFFNNLS 371
            S       + 
Sbjct: 336 DSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  153 bits (389), Expect = 5e-42
 Identities = 79/378 (20%), Positives = 141/378 (37%), Gaps = 51/378 (13%)

Query: 46  LQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELT 105
              L+     +N  FP   ++L +     L    +          + S+T L +   ++ 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKVA 57

Query: 106 LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLS 165
                 I    NL YL+L+ N+++ + P    +NL KL  L +  N+        +  L+
Sbjct: 58  --SIQGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKI--TDISALQNLT 110

Query: 166 NLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 225
           NL  L L  +  S   P                          L  L  +  L+L  N  
Sbjct: 111 NLRELYLNEDNISDISP--------------------------LANLTKMYSLNLGANHN 144

Query: 226 NSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNW 285
             +    L   T L++L +  +++       ++NL+ L  L L+ N +        + + 
Sbjct: 145 -LSDLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISP---LASL 198

Query: 286 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQ 345
           T L       N      P  +  +T+L  L +  N  +   P  +  L+ L  L++  NQ
Sbjct: 199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ 254

Query: 346 LSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRL 405
           +S      + +LT L  L +  N +S      + +++ L +  +N NQL  E  E I  L
Sbjct: 255 ISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310

Query: 406 VNLNKFSVFTNNFSGSIP 423
            NL    +  N+ +   P
Sbjct: 311 TNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  145 bits (369), Expect = 4e-39
 Identities = 76/399 (19%), Positives = 137/399 (34%), Gaps = 54/399 (13%)

Query: 94  LTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQF 153
              L+     +   FP             L    ++ ++       L  +  L +   + 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKV 56

Query: 154 QGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLK 213
                  +  L+NL  L L  N+ +   P  +  +  +  + +  N  T    S+L  L 
Sbjct: 57  AS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLT 110

Query: 214 NLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFL 273
           NL+ L L  + ++      L   T +  L L  N         LSN++ LN L ++++ +
Sbjct: 111 NLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKV 167

Query: 274 SGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKL 333
                   I N T+L SL +  N      P  +  LT L Y   Y N  +   P  +  +
Sbjct: 168 KDVTP---IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANM 220

Query: 334 TSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQ 393
           T L  L +  N+++   P  L NL+ L  L++  N +S      +  +  L   +V +NQ
Sbjct: 221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQ 276

Query: 394 LHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCS 453
           +       ++ L  LN   +  N          G  +                       
Sbjct: 277 ISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT----------------------- 311

Query: 454 GFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFT 492
              L  L ++ N+ T   P  + + S ++   F      
Sbjct: 312 --NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  125 bits (316), Expect = 6e-32
 Identities = 67/358 (18%), Positives = 136/358 (37%), Gaps = 27/358 (7%)

Query: 207 SSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNEL 266
                L       L+  ++   +        +++ L +A  +++      +  L+ L  L
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYL 71

Query: 267 GLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPI 326
            L+ N ++       + N  +L +L I  N         +  LT L+ L+L  ++ S   
Sbjct: 72  NLNGNQITDISP---LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDIS 126

Query: 327 PSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVA 386
           P  +  LT +  L+L  N    +    L N+T L  L +  + +       I ++  L +
Sbjct: 127 P--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYS 181

Query: 387 FDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGE 446
             +N NQ+       ++ L +L+ F+ + N  +   P         L ++   NN  +  
Sbjct: 182 LSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANM-TRLNSLKIGNNKITDL 236

Query: 447 LPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLD 506
            P    S   L  L +  N  +  + A +++ + L  +    NQ +           +L+
Sbjct: 237 SPLANLS--QLTWLEIGTNQIS-DINA-VKDLTKLKMLNVGSNQISD--ISVLNNLSQLN 290

Query: 507 FIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT 564
            + L+ N    E     G   NL+ L L +N I+   P  L +L+++      +  + 
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (310), Expect = 4e-31
 Identities = 77/351 (21%), Positives = 129/351 (36%), Gaps = 27/351 (7%)

Query: 215 LQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLS 274
              L      +N   P             L    ++    ++   L  + +L ++   ++
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57

Query: 275 GEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLT 334
             I    I   T LE L +  N    +I P +  L KL  L++  N  +    S +  LT
Sbjct: 58  -SIQG--IEYLTNLEYLNLNGNQI-TDISP-LSNLVKLTNLYIGTNKIT--DISALQNLT 110

Query: 335 SLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQL 394
           +L +L L+ + +S   P  L NLT + SL L  N+   +    + +M  L    V  +++
Sbjct: 111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKV 167

Query: 395 HGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSG 454
                  I+ L +L   S+  N      P        SL   +   N  +   P    + 
Sbjct: 168 KD--VTPIANLTDLYSLSLNYNQIEDISP--LASL-TSLHYFTAYVNQITDITPVANMT- 221

Query: 455 FALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNH 514
             L  L +  N  T   P  + N S L  +    NQ +     A     +L  + +  N 
Sbjct: 222 -RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQ 276

Query: 515 FIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565
            I +IS        L++L L+ N++       +G LT L  L L  N +T 
Sbjct: 277 -ISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  177 bits (450), Expect = 1e-47
 Identities = 112/574 (19%), Positives = 195/574 (33%), Gaps = 71/574 (12%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEM-GDLSELQYLSVYNNSLNGA 59
           L LS N I      +   L  L  L+L +     +I  E   +L  L+ L + ++ +   
Sbjct: 29  LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88

Query: 60  FPFQLSNLRKVRYLDLGGNFLETPDWSK--FSNMPSLTHLSLCYNELT-LEFPSFILTCR 116
            P     L  +  L L    L         F N+ +LT L L  N++  L          
Sbjct: 89  HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148

Query: 117 NLTYLDLSLNKLSGLIPERLFTNLG--KLEYLNLTDNQFQGKLSPNVSKLSN------LT 168
           +L  +D S N++   + E     L    L + +L  N    ++S +  K  N      L 
Sbjct: 149 SLKSIDFSSNQIFL-VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207

Query: 169 VLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNST 228
           +L ++ N ++  I G             F+N+ +     SL    ++       + +   
Sbjct: 208 ILDVSGNGWTVDITG------------NFSNAISKSQAFSLILAHHIMGAGFGFHNI-KD 254

Query: 229 IPPEL--GLC-TNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNW 285
                  GL  +++  L L+   +          L  L  L L+ N ++           
Sbjct: 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN----------- 303

Query: 286 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQ 345
                 +I + +F G        L  LQ L L  N       S    L  +  +DL  N 
Sbjct: 304 ------KIADEAFYG--------LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349

Query: 346 LSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRL 405
           ++     T   L  L +L L  N L+      I  + S+    ++ N+L      N++  
Sbjct: 350 IAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLT-- 402

Query: 406 VNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGF-ALEELTVNG 464
              N   +  N         F    P L  +  + N FS     +  S   +LE+L +  
Sbjct: 403 --ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460

Query: 465 NNFTGSLPACM-----RNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEI 519
           N    +    +        S+L  +  + N         F     L  + L+ N  +  +
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR-LTVL 519

Query: 520 SPDWGECRNLSNLQLDRNKISGGIPAELGNLTRL 553
           S +     NL  L + RN++    P    +L+ L
Sbjct: 520 SHNDL-PANLEILDISRNQLLAPNPDVFVSLSVL 552

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  139 bits (353), Expect = 5e-35
 Identities = 87/497 (17%), Positives = 162/497 (32%), Gaps = 64/497 (12%)

Query: 88  FSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLN 147
              + +   L L +N +     S       L  L+L        I +  F NL  L  L+
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 148 LTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSGPI--PGDIGLMSNIQLVELFNNSFTG- 203
           L  ++    L P+    L +L  LRL     S  +   G    +  +  ++L  N     
Sbjct: 80  LGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138

Query: 204 QIPSSLGQLKNLQHLDLRMNALNSTIPPEL--GLC-TNLSFLALAMNQLSGGLPLSLSNL 260
            +  S G+L +L+ +D   N +   +       L    LSF +LA N L   + +     
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQI-FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

Query: 261 S------RLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQY 314
                   L  L +S N  + +I+ N     ++ ++  +              L   +  
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI-------------LAHHIMG 244

Query: 315 LFLYRNHFSGPIPSEIGKL--TSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSG 372
                ++   P  +    L  +S+  LDLS   +          L +L  L L +N ++ 
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304

Query: 373 TIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPS 432
                   + +L   +++ N L      N   L  +    +  N+ +  I     KF   
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEK 363

Query: 433 LINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFT 492
           L  +   +N+ +      +    ++ ++ ++GN    +LP   +     N +    N+  
Sbjct: 364 LQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TLP---KINLTANLIHLSENRLE 414

Query: 493 GNITRAFGVH-PRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLT 551
                 F +  P L  + L+ N      S D        +L+                  
Sbjct: 415 NLDILYFLLRVPHLQILILNQNR-FSSCSGD-QTPSENPSLE------------------ 454

Query: 552 RLGVLSLDSNELTGKNS 568
               L L  N L     
Sbjct: 455 ---QLFLGENMLQLAWE 468

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  131 bits (330), Expect = 3e-32
 Identities = 78/378 (20%), Positives = 133/378 (35%), Gaps = 50/378 (13%)

Query: 1   LDLSHNNISGPIPPAIGTL--SNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNG 58
                +NI  P       L  S++  LDL++             L +L+ L++  N +N 
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304

Query: 59  AFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNL 118
                   L  ++ L+L  N L     S F  +P + ++ L  N +              
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA------------- 351

Query: 119 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFS 178
                       +I ++ F  L KL+ L+L DN         +  + ++  + L+ NK  
Sbjct: 352 ------------IIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV 394

Query: 179 GPIPGDIGLMSNIQLVELFNNSFTG-QIPSSLGQLKNLQHLDLRMNALNSTIPPEL-GLC 236
                ++       L+ L  N      I   L ++ +LQ L L  N  +S    +     
Sbjct: 395 TLPKINLTA----NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 237 TNLSFLALAMNQLSGGLPLSL-----SNLSRLNELGLSDNFLSGEISANLIGNWTELESL 291
            +L  L L  N L       L       LS L  L L+ N+L+  +   +  + T L  L
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGL 509

Query: 292 QIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIP 351
            + +N     +     L   L+ L + RN    P P       SL  LD++ N+      
Sbjct: 510 SLNSNRLT-VLSHND-LPANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECE 564

Query: 352 -PTLWNLTNLLSLQLFFN 368
             T  N  N  ++ +   
Sbjct: 565 LSTFINWLNHTNVTIAGP 582

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  171 bits (436), Expect = 7e-47
 Identities = 106/512 (20%), Positives = 180/512 (35%), Gaps = 29/512 (5%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           LDLS N +      +  +   L  LDL+    +         LS L  L +  N +    
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELT-LEFPSFILTCRNLT 119
               S L  ++ L      L + +     ++ +L  L++ +N +   + P +     NL 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEY----LNLTDNQFQGKLSPNVSKLSNLTVLRLATN 175
           +LDLS NK+   I       L ++      L+L+ N     + P   K   L  L L  N
Sbjct: 153 HLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNN 210

Query: 176 KFSGPIP-GDIGLMSNIQLVELFNNSFTGQI------PSSLGQLKNLQHLDLRMNALN-- 226
             S  +    I  ++ +++  L    F  +        S+L  L NL   + R+  L+  
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 227 -STIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNW 285
              I       TN+S  +L    +        S       L L +       +  L    
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKL---- 324

Query: 286 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRN--HFSGPIPSEIGKLTSLEKLDLSG 343
             L+ L   +N   GN   E+  L  L++L L RN   F G         TSL+ LDLS 
Sbjct: 325 KSLKRLTFTSNKG-GNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 344 NQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI 402
           N +  T+      L  L  L    +NL       +  S+ +L+  D++            
Sbjct: 383 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 403 SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTV 462
           + L +L    +  N+F  +   D      +L  +  S        P    S  +L+ L +
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 463 NGNNFTGSLPACMRNCSNLNRVRFDGNQFTGN 494
             N             ++L ++    N +  +
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  154 bits (392), Expect = 7e-41
 Identities = 109/542 (20%), Positives = 183/542 (33%), Gaps = 53/542 (9%)

Query: 14  PAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYL 73
           P +  + N+T+  +  N +   IP  +      + L +  N L     +   +  +++ L
Sbjct: 2   PCVEVVPNITYQCMELNFY--KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVL 57

Query: 74  DLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIP 133
           DL    ++T +   + ++  L+ L L  N +            +L  L      L+ L  
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-E 116

Query: 134 ERLFTNLGKLEYLNLTDNQFQ-GKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQ 192
                +L  L+ LN+  N  Q  KL    S L+NL  L L++NK       D+ ++  + 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 193 LVE----LFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPE-LGLCTNLSFLALAMN 247
           L+     L  N     I     +   L  L LR N  +  +    +     L    L + 
Sbjct: 177 LLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 248 QLSGGLPLS------LSNLSRLNELGLSDNFLSGEIS--------------ANLIGN--- 284
           +      L       L  L  L        +L   +                +L+     
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 285 -------WTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLE 337
                      + L++ N  F     P +  L  L+ L    N       SE+  L SLE
Sbjct: 296 RVKDFSYNFGWQHLELVNCKF--GQFPTLK-LKSLKRLTFTSNKGGN-AFSEVD-LPSLE 350

Query: 338 KLDLSGNQLS--GTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLH 395
            LDLS N LS  G    + +  T+L  L L FN +  T+      +  L   D   + L 
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 409

Query: 396 GELPENI-SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSG 454
                ++   L NL    +   +   +  G F     SL  +  + NSF      ++ + 
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTE 468

Query: 455 F-ALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGN 513
              L  L ++        P    + S+L  +    NQ        F     L  I L  N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

Query: 514 HF 515
            +
Sbjct: 529 PW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  140 bits (354), Expect = 1e-35
 Identities = 87/393 (22%), Positives = 135/393 (34%), Gaps = 29/393 (7%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTF----LDLNNNLFEGSIPSEMGDLSELQYLSVYNNSL 56
           LDLS N I       +  L  +      LDL+ N     I         L  L++ NN  
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFD 212

Query: 57  NGA-FPFQLSNLRKVRYLDL------GGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFP 109
           +       +  L  +    L          LE  D S    + +LT        L     
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 110 SFILT---CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSN 166
             I       N++   L    +  +           LE +N    QF         KL +
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT------LKLKS 326

Query: 167 LTVLRLATNKFSGPIPGDIGLMSNIQLVELFNN--SFTGQIPSSLGQLKNLQHLDLRMNA 224
           L  L   +NK       ++ L  +++ ++L  N  SF G    S     +L++LDL  N 
Sbjct: 327 LKRLTFTSNKGGN-AFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 225 LNSTIPPELGLCTNLSFLALAMNQLSGGLPLS-LSNLSRLNELGLSDNFLSGEISANLIG 283
           +  T+         L  L    + L      S   +L  L  L +S           +  
Sbjct: 385 V-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFN 442

Query: 284 NWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLS 342
             + LE L++  NSF  N  P+I   L  L +L L +       P+    L+SL+ L+++
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502

Query: 343 GNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIP 375
            NQL          LT+L  + L  N    + P
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  135 bits (341), Expect = 5e-34
 Identities = 90/484 (18%), Positives = 163/484 (33%), Gaps = 39/484 (8%)

Query: 92  PSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDN 151
            S  +L L +N L         +   L  LDLS  ++   I +  + +L  L  L LT N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGN 86

Query: 152 QFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFT-GQIPSSL 209
             Q  L+    S LS+L  L       +      IG +  ++ + + +N     ++P   
Sbjct: 87  PIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 210 GQLKNLQHLDLRMNALNSTIPPELGLCTNLSF----LALAMNQLSGGLPLSLSNLSRLNE 265
             L NL+HLDL  N + S    +L +   +      L L++N ++   P +   +  L++
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHK 204

Query: 266 LGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGP 325
           L L +NF S  +    I     LE  ++    F                      +    
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE------------------GNLEKF 246

Query: 326 IPSEIGKLTSLEKLDLSGNQLSG---TIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMA 382
             S +  L +L   +     L      I      LTN+ S  L    +      +     
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNF 304

Query: 383 SLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNS 442
                ++   +        +  L  L     FT+N  G+   +    S   +++S +  S
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLT----FTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360

Query: 443 FSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITR-AFGV 501
           F G          +L+ L ++ N    ++ +       L  + F  +          F  
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 502 HPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAE-LGNLTRLGVLSLDS 560
              L ++ +S  H     +  +    +L  L++  N        +    L  L  L L  
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 561 NELT 564
            +L 
Sbjct: 480 CQLE 483

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  162 bits (412), Expect = 1e-43
 Identities = 94/523 (17%), Positives = 183/523 (34%), Gaps = 29/523 (5%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
            D    + +  IP  +   + +  LDL+ N        ++   + LQ L + ++ +N   
Sbjct: 10  CDGRSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELT-LEFPSFILTCRNLT 119
                +L  + +LDL  N L +   S F  + SL +L+L  N    L   S      NL 
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSG 179
            L +   +    I    F  L  L  L +     +   S ++  + ++  L L  ++ + 
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186

Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNL 239
            +     ++S+++ +EL + +      S L   +    +       +            L
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246

Query: 240 SFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFM 299
               L ++++         + + LN LG  +   S  +S         +  L I      
Sbjct: 247 LRYILELSEVE------FDDCT-LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF 299

Query: 300 GNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPT---LWN 356
            ++     LL K++ + +  +       S    L SLE LDLS N +             
Sbjct: 300 YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 357 LTNLLSLQLFFNNLSGTIPPEIG---SMASLVAFDVNTNQLHGELPENISRLVNLNKFSV 413
             +L +L L  N+L  ++        ++ +L + D++ N  H  +P++      +   ++
Sbjct: 360 WPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417

Query: 414 FTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPA 473
            +                +L  +  SNN+        L     L+EL ++ N    +LP 
Sbjct: 418 SSTGIRVVKTCIP----QTLEVLDVSNNNLD-SFSLFLPR---LQELYISRNKLK-TLPD 468

Query: 474 CMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFI 516
                  L  ++   NQ        F     L  I L  N + 
Sbjct: 469 AS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  131 bits (332), Expect = 6e-33
 Identities = 62/378 (16%), Positives = 124/378 (32%), Gaps = 35/378 (9%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L++   ++      ++ ++ ++  L L+ +     +      LS ++YL + + +L    
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFI-------- 112
              L        +              F+ +  L    L  +E+  +  +          
Sbjct: 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272

Query: 113 ----------LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVS 162
                     +    +  L +    L       +++ L K++ + + +++          
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFY-DLSTVYSLLEKVKRITVENSKVFLVPCSFSQ 331

Query: 163 KLSNLTVLRLATNKFS---GPIPGDIGLMSNIQLVELFNNSFT--GQIPSSLGQLKNLQH 217
            L +L  L L+ N             G   ++Q + L  N      +    L  LKNL  
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391

Query: 218 LDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEI 277
           LD+  N  +  +P        + FL L+   +     +       L  L +S+N L    
Sbjct: 392 LDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSNNNLD-SF 446

Query: 278 SANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLE 337
           S  L      L+ L I  N       P+  L   L  + + RN           +LTSL+
Sbjct: 447 SLFL----PRLQELYISRNKL--KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500

Query: 338 KLDLSGNQLSGTIPPTLW 355
           K+ L  N    + P   +
Sbjct: 501 KIWLHTNPWDCSCPRIDY 518

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  127 bits (322), Expect = 1e-31
 Identities = 70/458 (15%), Positives = 149/458 (32%), Gaps = 42/458 (9%)

Query: 113 LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRL 172
           L+C      D      +  IP  L   +   + L+L+ N+       ++   +NL VL L
Sbjct: 2   LSCDASGVCDGRSRSFTS-IPSGLTAAM---KSLDLSFNKITYIGHGDLRACANLQVLIL 57

Query: 173 ATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPE 232
            +++ +         + +++ ++L +N  +    S  G L +L++L+L  N   +     
Sbjct: 58  KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117

Query: 233 LGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQ 292
           L                         NL+ L  L + +     EI        T L  L+
Sbjct: 118 L-----------------------FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154

Query: 293 IQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPP 352
           I+  S        +  +  + +L L+ +  +  +      L+S+  L+L    L+     
Sbjct: 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS 214

Query: 353 TLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFS 412
            L        ++      S         +  L+ + +  +++             LN   
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE-------FDDCTLNGLG 267

Query: 413 VFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLP 472
            F  + S  +       + ++  +         +L         ++ +TV  +       
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC 327

Query: 473 ACMRNCSNLNRVRFDGNQFTGNI---TRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNL 529
           +  ++  +L  +    N         +   G  P L  + LS NH +  +         L
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTL 386

Query: 530 SNLQ---LDRNKISGGIPAELGNLTRLGVLSLDSNELT 564
            NL    + RN     +P       ++  L+L S  + 
Sbjct: 387 KNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIR 423

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  153 bits (390), Expect = 2e-42
 Identities = 59/330 (17%), Positives = 106/330 (32%), Gaps = 27/330 (8%)

Query: 19  LSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGN 78
            S    L    +         +                     ++ +N    +     G 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGR 66

Query: 79  FL-ETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLF 137
            L  T D  + +  P    L L    L  +FP       +L ++ +    L  L      
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDT--M 123

Query: 138 TNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELF 197
                LE L L  N  +  L  +++ L+ L  L +        +P  +            
Sbjct: 124 QQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD-------- 174

Query: 198 NNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSL 257
                         L NLQ L L    +  ++P  +    NL  L +  + LS  L  ++
Sbjct: 175 -------ASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLS-ALGPAI 225

Query: 258 SNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFL 317
            +L +L EL L              G    L+ L +++ S +  +P +I  LT+L+ L L
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 318 YRNHFSGPIPSEIGKLTSLEKLDLSGNQLS 347
                   +PS I +L +   + +  +  +
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  147 bits (372), Expect = 8e-40
 Identities = 63/307 (20%), Positives = 103/307 (33%), Gaps = 27/307 (8%)

Query: 115 CRNLTYLDLS-LNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLA 173
                 L       L           L + +     D         +  + +N    ++ 
Sbjct: 11  SSGRENLYFQGSTAL-----RPYHDVLSQWQRHYNADRN----RWHSAWRQANSNNPQIE 61

Query: 174 TNKFSG--PIPGDIGLMSNIQLVELF--NNSFTGQIPSSLGQLKNLQHLDLRMNALNSTI 229
           T            +   +    V L   +     Q P    +L +LQH+ +    L   +
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-L 119

Query: 230 PPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANL-------- 281
           P  +     L  L LA N L   LP S+++L+RL EL +       E+   L        
Sbjct: 120 PDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 282 IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDL 341
                 L+SL+++      ++P  I  L  L+ L +  +  S  +   I  L  LE+LDL
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDL 236

Query: 342 SGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPEN 401
            G       PP       L  L L   +   T+P +I  +  L   D+        LP  
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 402 ISRLVNL 408
           I++L   
Sbjct: 297 IAQLPAN 303

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  145 bits (368), Expect = 3e-39
 Identities = 58/337 (17%), Positives = 102/337 (30%), Gaps = 28/337 (8%)

Query: 66  NLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSL 125
           +      L   G+    P     S      +             +      N      + 
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIETRTG 65

Query: 126 NKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDI 185
             L                 L L       +      +LS+L  + +        +P  +
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTM 123

Query: 186 GLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALA 245
              + ++ + L  N     +P+S+  L  L+ L +R     + +P  L            
Sbjct: 124 QQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD-------- 174

Query: 246 MNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPE 305
                         L  L  L L    +   + A+ I N   L+SL+I+N+     + P 
Sbjct: 175 -------ASGEHQGLVNLQSLRLEWTGIR-SLPAS-IANLQNLKSLKIRNSPLSA-LGPA 224

Query: 306 IGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSG-NQLSGTIPPTLWNLTNLLSLQ 364
           I  L KL+ L L         P   G    L++L L   + L  T+P  +  LT L  L 
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLD 283

Query: 365 LFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPEN 401
           L        +P  I  + +     V  +    +L ++
Sbjct: 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQ-AQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  130 bits (328), Expect = 1e-33
 Identities = 53/329 (16%), Positives = 101/329 (30%), Gaps = 29/329 (8%)

Query: 139 NLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFN 198
           +    E L    +         +S+                         +N Q+     
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTG 65

Query: 199 NSFTGQIPSSLGQLK--NLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLS 256
            +        L          L+LR   L    P +    ++L  + +    L   LP +
Sbjct: 66  RALK-ATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLME-LPDT 122

Query: 257 LSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLF 316
           +   + L  L L+ N L   + A+ I +   L  L I+    +  +P  +          
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPAS-IASLNRLRELSIRACPELTELPEPLASTD------ 174

Query: 317 LYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPP 376
                       E   L +L+ L L    +  ++P ++ NL NL SL++  + LS  + P
Sbjct: 175 ---------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGP 223

Query: 377 EIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINV 436
            I  +  L   D+         P        L +  +   +   ++P D  + +  L  +
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT-QLEKL 282

Query: 437 SFSNNSFSGELPYELCSGFALEELTVNGN 465
                     LP  +    A   + V  +
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  128 bits (324), Expect = 3e-33
 Identities = 48/357 (13%), Positives = 96/357 (26%), Gaps = 49/357 (13%)

Query: 208 SLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELG 267
                   ++L  + +         L                        +N +      
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIET 62

Query: 268 LSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIP 327
            +   L                +L++++       P +   L+ LQ++ +        +P
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLME-LP 120

Query: 328 SEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAF 387
             + +   LE L L+ N L   +P ++ +L  L  L +        +P  + S       
Sbjct: 121 DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST------ 173

Query: 388 DVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGEL 447
                    +       LVNL    +       S+P        +L ++   N+  S  L
Sbjct: 174 ---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ-NLKSLKIRNSPLS-AL 221

Query: 448 PYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDF 507
              +     LEEL + G     + P      + L R                     L  
Sbjct: 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR---------------------LI- 259

Query: 508 IRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT 564
             L     +  +  D      L  L L        +P+ +  L    ++ +  +   
Sbjct: 260 --LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  124 bits (314), Expect = 8e-32
 Identities = 47/250 (18%), Positives = 89/250 (35%), Gaps = 21/250 (8%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L+L    +    P     LS+L  + ++       +P  M   + L+ L++  N L  A 
Sbjct: 86  LELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-AL 142

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           P  +++L ++R L +           + + +P      L       +         NL  
Sbjct: 143 PASIASLNRLRELSIRAC-------PELTELPE----PLAS----TDASGEHQGLVNLQS 187

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           L L    +  L       NL  L+ L + ++     L P +  L  L  L L        
Sbjct: 188 LRLEWTGIRSLPAS--IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRN 244

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
            P   G  + ++ + L + S    +P  + +L  L+ LDLR     S +P  +       
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304

Query: 241 FLALAMNQLS 250
            + +  +  +
Sbjct: 305 IILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.0 bits (154), Expect = 6e-11
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 25/138 (18%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L + ++ +S  + PAI  L  L  LDL       + P   G  + L+ L + + S     
Sbjct: 211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           P  +  L ++  LDL G               +L+ L           PS I        
Sbjct: 270 PLDIHRLTQLEKLDLRGC-------------VNLSRL-----------PSLIAQLPANCI 305

Query: 121 LDLSLNKLSGLIPERLFT 138
           + +  +  + L   R   
Sbjct: 306 ILVPPHLQAQLDQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.2 bits (144), Expect = 9e-10
 Identities = 17/94 (18%), Positives = 34/94 (36%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           LDL         PP  G  + L  L L +     ++P ++  L++L+ L +         
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSL 94
           P  ++ L     + +  +     D  +    P+ 
Sbjct: 294 PSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  154 bits (390), Expect = 9e-42
 Identities = 75/361 (20%), Positives = 144/361 (39%), Gaps = 22/361 (6%)

Query: 12  IPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVR 71
           I   +        + ++    +     E   L+  + ++  N+++       L + R+V 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 72  YLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGL 131
            L+L    +E  D   F+   ++  L + +N +    P        LT L L  N LS  
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-S 131

Query: 132 IPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLMSN 190
           +P  +F N  KL  L++++N  + ++  +     ++L  L+L++N+ +     D+ L+ +
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPS 187

Query: 191 IQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLS 250
           +    +  N  +     +L     ++ LD   N++ + +     +   L+ L L  N L+
Sbjct: 188 LFHANVSYNLLS-----TLAIPIAVEELDASHNSI-NVVRG--PVNVELTILKLQHNNLT 239

Query: 251 GGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLT 310
                 L N   L E+ LS N L  +I  +       LE L I NN  +  +      + 
Sbjct: 240 D--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 295

Query: 311 KLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNL 370
            L+ L L  NH    +     +   LE L L  N +  T+  +      L +L L  N+ 
Sbjct: 296 TLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV-TLKLS--THHTLKNLTLSHNDW 351

Query: 371 S 371
            
Sbjct: 352 D 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  139 bits (353), Expect = 1e-36
 Identities = 63/377 (16%), Positives = 133/377 (35%), Gaps = 28/377 (7%)

Query: 35  SIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSL 94
            I S +        + +   + +  F F+   L   + +    + +     +   +   +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 95  THLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQ 154
             L+L   ++             +  L +  N +  L P  +F N+  L  L L  N   
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS 130

Query: 155 GKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLK 213
             L   +      LT L ++ N             +++Q ++L +N  T  +   L  + 
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIP 186

Query: 214 NLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFL 273
           +L H ++  N L++     L +   +  L  + N ++    +       L  L L  N L
Sbjct: 187 SLFHANVSYNLLST-----LAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNL 238

Query: 274 SGEISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNHFSGPIPSEIGK 332
           + + +   + N+  L  + +  N     I       + +L+ L++  N     +      
Sbjct: 239 T-DTAW--LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP 293

Query: 333 LTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTN 392
           + +L+ LDLS N L   +         L +L L  N++  T+     +  +L    ++ N
Sbjct: 294 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHN 349

Query: 393 QLHG----ELPENISRL 405
                    L  N++R 
Sbjct: 350 DWDCNSLRALFRNVARP 366

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  115 bits (289), Expect = 5e-28
 Identities = 59/313 (18%), Positives = 97/313 (30%), Gaps = 29/313 (9%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEM-GDLSELQYLSVYNNSLNGA 59
           L+L+   I      A      +  L +  N     +P  +  ++  L  L +  N L+  
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSL 132

Query: 60  FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELT-LEFPSF------- 111
                 N  K+  L +  N LE  +   F    SL +L L  N LT ++           
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN 192

Query: 112 --------ILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSK 163
                   +     +  LD S N ++  +   +      L  L L  N      +  +  
Sbjct: 193 VSYNLLSTLAIPIAVEELDASHNSINV-VRGPVNVE---LTILKLQHNNLTD--TAWLLN 246

Query: 164 LSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 223
              L  + L+ N+    +      M  ++ + + NN     +      +  L+ LDL  N
Sbjct: 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 305

Query: 224 ALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIG 283
            L   +         L  L L  N +     L LS    L  L LS N         L  
Sbjct: 306 HL-LHVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWDCNSLRALFR 361

Query: 284 NWTELESLQIQNN 296
           N           +
Sbjct: 362 NVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (277), Expect = 2e-26
 Identities = 61/340 (17%), Positives = 113/340 (33%), Gaps = 21/340 (6%)

Query: 227 STIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWT 286
             I   L        + + M             L+    +   ++ +  ++ A L+ ++ 
Sbjct: 11  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFR 69

Query: 287 ELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQ 345
           ++E L + +      I          +Q L++  N      P     +  L  L L  N 
Sbjct: 70  QVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128

Query: 346 LSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENISR 404
           LS        N   L +L +  NNL   I  +   +  SL    +++N+L       I  
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS 187

Query: 405 LVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNG 464
           L + N     + N   ++         ++  +  S+NS +  +   +     L  L +  
Sbjct: 188 LFHAN----VSYNLLSTLAI-----PIAVEELDASHNSIN-VVRGPVNVE--LTILKLQH 235

Query: 465 NNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWG 524
           NN T      + N   L  V    N+    +   F    RL+ + +S N  +  ++    
Sbjct: 236 NNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQ 292

Query: 525 ECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT 564
               L  L L  N +   +        RL  L LD N + 
Sbjct: 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  100 bits (251), Expect = 4e-23
 Identities = 69/392 (17%), Positives = 135/392 (34%), Gaps = 32/392 (8%)

Query: 184 DIGLMSNIQLVELFNNSFTGQIPSSLGQ--LKNLQHLDLRMNALNSTIPPE-LGLCTNLS 240
           D  L  +    ++  +  T  +        L N + +  + + +   +P   L     + 
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQVE 72

Query: 241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 300
            L L   Q+      + +    + +L +  N +   +  ++  N   L  L ++ N    
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 301 NIPPEI-GLLTKLQYLFLYRNHFSGPIPSEI-GKLTSLEKLDLSGNQLSGTIPPTLWNLT 358
           ++P  I     KL  L +  N+    I  +     TSL+ L LS N+L+  +  +   + 
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT-HVDLS--LIP 186

Query: 359 NLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNF 418
           +L    + +N LS      +    ++   D + N ++  +   +   V L    +  NN 
Sbjct: 187 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL 238

Query: 419 SGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGF-ALEELTVNGNNFTGSLPACMRN 477
           +         + P L+ V  S N    ++ Y        LE L ++ N    +L    + 
Sbjct: 239 TD--TAWLLNY-PGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQP 293

Query: 478 CSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRN 537
              L  +    N    ++ R      RL+ + L  N  I  +         L NL L  N
Sbjct: 294 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS-IVTLKLS--THHTLKNLTLSHN 349

Query: 538 KISGGIPAELGNLTRLGVLSLDSNELTGKNSY 569
                    L     +   ++D  +   K  Y
Sbjct: 350 DWDCNSLRAL--FRNVARPAVDDADQHCKIDY 379

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  152 bits (385), Expect = 2e-40
 Identities = 63/425 (14%), Positives = 129/425 (30%), Gaps = 25/425 (5%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
             ++ +++   +     +  N+  LDL+ N       +++   ++L+ L++ +N L    
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL 74

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
                +L  +R LDL  N++      +    PS+  L    N ++          +    
Sbjct: 75  DL--ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSRG--QGKKN 124

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQG-KLSPNVSKLSNLTVLRLATNKFSG 179
           + L+ NK++  + +       +++YL+L  N+      +   +    L  L L  N    
Sbjct: 125 IYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183

Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNL 239
            + G +   + ++ ++L +N     +         +  + LR N L   I   L    NL
Sbjct: 184 -VKGQVVF-AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNL 239

Query: 240 SFLALAMNQLSGG-LPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSF 298
               L  N    G L    S   R+  +         +++       T            
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV---KKLTGQNEEECTVPTLGHYGAYCC 296

Query: 299 MGNIPPEIGLLTKLQYLFLYRNHFSG----PIPSEIGKLTSLEKLDLSGNQLSGTIPPTL 354
                P    L  L+          G     +  E        ++D    Q    I    
Sbjct: 297 EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVT 356

Query: 355 WNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVF 414
                 ++L+     L   +     + A L            EL         L      
Sbjct: 357 LRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ-IELQHATEEQSPLQLLRAI 415

Query: 415 TNNFS 419
              + 
Sbjct: 416 VKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  143 bits (361), Expect = 4e-37
 Identities = 53/395 (13%), Positives = 117/395 (29%), Gaps = 20/395 (5%)

Query: 19  LSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGN 78
            +      + ++  + ++ S       ++ L +  N L+      L+   K+  L+L  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 79  FLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFT 138
            L         ++ +L  L L  N +       +L   ++  L  + N +S  +      
Sbjct: 69  VLYET--LDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR-VSCSRGQ 120

Query: 139 NLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSG-PIPGDIGLMSNIQLVELF 197
                + + L +N+       +    S +  L L  N+               ++ + L 
Sbjct: 121 G---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 198 NNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSL 257
            N     +   +     L+ LDL  N L + + PE      +++++L  N+L   +  +L
Sbjct: 178 YNFIY-DVKGQV-VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233

Query: 258 SNLSRLNELGLSDNFLSGEISANLIGNWTELESLQI-QNNSFMGNIPPEIGLLTKLQYLF 316
                L    L  N        +       ++++         G    E  + T   Y  
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

Query: 317 LYRNHFSGPIPSEIGKLTS--LEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTI 374
                   P    +  L       L   G++    +     N      +          I
Sbjct: 294 YCCEDLPAPFADRLIALKRKEHALLSGQGSETER-LECERENQARQREIDALKEQYRTVI 352

Query: 375 PPEIGSMASLVAFDVNTNQLHGELPENISRLVNLN 409
                   + +  +     L  ++         L+
Sbjct: 353 DQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  140 bits (355), Expect = 2e-36
 Identities = 70/500 (14%), Positives = 132/500 (26%), Gaps = 63/500 (12%)

Query: 66  NLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSL 125
           N  + +   +  + L+    S   +  ++  L L  N L+    + +     L  L+LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 126 NKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDI 185
           N L   +      +L  L  L+L +N  Q      +    ++  L  A N  S  +    
Sbjct: 68  NVLYETLD---LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR-VSCSR 118

Query: 186 GLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPEL-GLCTNLSFLAL 244
                 + + L NN  T       G    +Q+LDL++N +++    EL      L  L L
Sbjct: 119 --GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 245 AMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPP 304
             N +   +       ++L  L LS N L+                           + P
Sbjct: 177 QYNFIY-DVK-GQVVFAKLKTLDLSSNKLA--------------------------FMGP 208

Query: 305 EIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQ 364
           E      + ++ L  N     I   +    +LE  DL GN          +   N     
Sbjct: 209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQT 266

Query: 365 LFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPG 424
           +    +                                 RL+ L +      +  GS   
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSET- 325

Query: 425 DFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRV 484
                                 L  E  +     E+      +   +            +
Sbjct: 326 --------------------ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITL 365

Query: 485 RFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIP 544
                     ++     H  LD         I        +        + +      + 
Sbjct: 366 EQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVE 425

Query: 545 AELGNLTRLGVLSLDSNELT 564
            +      +    +  ++ T
Sbjct: 426 QQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  135 bits (341), Expect = 2e-34
 Identities = 67/421 (15%), Positives = 127/421 (30%), Gaps = 22/421 (5%)

Query: 35  SIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSL 94
           +I     + +  +   V ++SL  A      +   V+ LDL GN L     +  +    L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 95  THLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQ 154
             L+L  N L  E      +   L  LDL+ N +  L           +E L+  +N   
Sbjct: 61  ELLNLSSNVLY-ETLDL-ESLSTLRTLDLNNNYVQEL------LVGPSIETLHAANNNIS 112

Query: 155 GKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTG-QIPSSLGQLK 213
            ++S +         + LA NK +     D G  S +Q ++L  N               
Sbjct: 113 -RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 214 NLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFL 273
            L+HL+L+ N +   +  ++     L  L L+ N+L+  +     + + +  + L +N L
Sbjct: 170 TLEHLNLQYNFI-YDVKGQVVF-AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 274 SGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKL 333
              I    +     LE   ++ N F      +       +   + +            + 
Sbjct: 227 V-LIEKA-LRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 334 TSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSG----TIPPEIGSMASLVAFDV 389
           T                 P    L  L   +    +  G     +  E  + A     D 
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343

Query: 390 NTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPY 449
              Q    + +   R                 +       +     +  +      +   
Sbjct: 344 LKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHAT 403

Query: 450 E 450
           E
Sbjct: 404 E 404

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  130 bits (329), Expect = 8e-33
 Identities = 65/413 (15%), Positives = 124/413 (30%), Gaps = 21/413 (5%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L+LS N +       + +LS L  LDLNNN        E+     ++ L   NN+++   
Sbjct: 63  LNLSSNVLYET--LDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR-- 113

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELT-LEFPSFILTCRNLT 119
               S  +  + + L  N +             + +L L  NE+  + F     +   L 
Sbjct: 114 -VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSG 179
           +L+L  N +  +  +       KL+ L+L+ N+    + P     + +T + L  NK   
Sbjct: 173 HLNLQYNFIYDVKGQ---VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL 228

Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNL 239
            I   +    N++  +L  N F           KN +   +    +          CT  
Sbjct: 229 -IEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 240 SFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANL---IGNWTELESLQIQNN 296
           +                   L  L     +     G  +  L     N      +     
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346

Query: 297 SFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWN 356
            +   I            L   +      + +       L+               T   
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQ 406

Query: 357 LTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLN 409
               L   +        +  +     ++  +D+  ++   +L E  +RL  LN
Sbjct: 407 SPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKE-TQLAEENARLKKLN 458

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 93.0 bits (231), Expect = 3e-20
 Identities = 44/260 (16%), Positives = 85/260 (32%), Gaps = 16/260 (6%)

Query: 306 IGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQL 365
                + +   +  +     + S      ++++LDLSGN LS      L   T L  L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 366 FFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGD 425
             N L      ++ S+++L   D+N N +     + +    ++       NN S      
Sbjct: 66  SSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSR 118

Query: 426 FGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTG-SLPACMRNCSNLNRV 484
                    N+  +NN  +     +      ++ L +  N     +      +   L  +
Sbjct: 119 G----QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 485 RFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIP 544
               N       +      +L  + LS N  +  + P++     ++ + L  NK+   I 
Sbjct: 175 NLQYNFIYDVKGQVV--FAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 545 AELGNLTRLGVLSLDSNELT 564
             L     L    L  N   
Sbjct: 231 KALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 89.5 bits (222), Expect = 4e-19
 Identities = 44/285 (15%), Positives = 91/285 (31%), Gaps = 19/285 (6%)

Query: 281 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLD 340
           +  N    +  ++ ++S    +         ++ L L  N  S    +++   T LE L+
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 341 LSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPE 400
           LS N L       L +L+ L +L L  N +      E+    S+       N +   +  
Sbjct: 65  LSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC 116

Query: 401 NISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGF--ALE 458
           +           +  N  +     D G     +  +    N     + +   +     LE
Sbjct: 117 SR--GQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEID-TVNFAELAASSDTLE 172

Query: 459 ELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGE 518
            L +  N     +   +   + L  +    N+    +   F     + +I L  N  +  
Sbjct: 173 HLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK-LVL 228

Query: 519 ISPDWGECRNLSNLQLDRNKISGG-IPAELGNLTRLGVLSLDSNE 562
           I       +NL +  L  N    G +        R+  ++  + +
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  147 bits (373), Expect = 7e-39
 Identities = 98/510 (19%), Positives = 164/510 (32%), Gaps = 90/510 (17%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
                +N++  +P     + + T      + +E + P   G+  E+    + +       
Sbjct: 16  PLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL----- 69

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
                  R+   L+L    L +         P L  L    N LT E P    + ++L  
Sbjct: 70  ------DRQAHELELNNLGLSSLP----ELPPHLESLVASCNSLT-ELPELPQSLKSLLV 118

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
            + +L  LS L P         LEYL +++NQ +    P +   S L ++ +  N     
Sbjct: 119 DNNNLKALSDLPP--------LLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLKK- 167

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNS------------- 227
           +P       +++ +   NN         L  L  L  +    N+L               
Sbjct: 168 LPDLPP---SLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVA 222

Query: 228 -----TIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLI 282
                   PEL     L+ +    N L   LP    +L  LN        L       L 
Sbjct: 223 GNNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLP-----ELP 276

Query: 283 GNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLS 342
            + T L+  +   +           L   L YL    N     I S      SLE+L++S
Sbjct: 277 QSLTFLDVSENIFSGLS-------ELPPNLYYLNASSNE----IRSLCDLPPSLEELNVS 325

Query: 343 GNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENI 402
            N+L   +P     L     L   FN+L+  +P    ++  L    V  N L  E P+  
Sbjct: 326 NNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQNLKQL---HVEYNPLR-EFPDIP 376

Query: 403 SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTV 462
             + +L       N+    +P    +   +L  +    N    E P    S   +E+L +
Sbjct: 377 ESVEDLR-----MNSHLAEVP----ELPQNLKQLHVETNPLR-EFPDIPES---VEDLRM 423

Query: 463 NGNNFTGSLPACMRNCSNLNRVRFDGNQFT 492
           N                 L    F+ +   
Sbjct: 424 NSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  108 bits (271), Expect = 2e-25
 Identities = 78/392 (19%), Positives = 132/392 (33%), Gaps = 55/392 (14%)

Query: 182 PGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSF 241
           P ++      + +   +++ T ++P     +K+        +      PP  G    ++ 
Sbjct: 5   PRNVSNTFLQEPL-RHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 242 LALAMNQLSGGLPLSLSN---------LSRLNELGLSDNFLSGEISANLIGNWTELESLQ 292
             L          L L+N            L  L  S N L+ E+   L  +   L    
Sbjct: 63  SRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELP-ELPQSLKSLLVDN 120

Query: 293 IQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPP 352
               +          L   L+YL +  N     +P E+   + L+ +D+  N L   +P 
Sbjct: 121 NNLKAL-------SDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPD 170

Query: 353 TLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFS 412
                 +L  +    N L     PE+ ++  L A   + N L  +LP+    L ++    
Sbjct: 171 ---LPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK-KLPDLPLSLESIV--- 221

Query: 413 VFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLP 472
              NN    +P +     P L  +   NN     LP    S   LE L V  N  T  LP
Sbjct: 222 -AGNNILEELP-ELQNL-PFLTTIYADNNLLK-TLPDLPPS---LEALNVRDNYLT-DLP 273

Query: 473 ACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNL 532
              ++ + L+      +  +          P L ++  S N  I  +        +L  L
Sbjct: 274 ELPQSLTFLDVSENIFSGLSELP-------PNLYYLNASSNE-IRSLCDLPP---SLEEL 322

Query: 533 QLDRNKISGGIPAELGNLTRLGVLSLDSNELT 564
            +  NK+   +PA    L R   L    N L 
Sbjct: 323 NVSNNKLI-ELPALPPRLER---LIASFNHLA 350

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 80.0 bits (198), Expect = 3e-16
 Identities = 55/290 (18%), Positives = 92/290 (31%), Gaps = 46/290 (15%)

Query: 302 IPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLL 361
           I P     T LQ    + ++ +  +P E   + S  +   + ++     PP       + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 362 SLQLFFN--------NLSG----TIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLN 409
             +L            L+     ++P     + SL     + N L  ELPE    L +L 
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELPPHLESL---VASCNSLT-ELPELPQSLKSLL 117

Query: 410 KFSVFTNNFSGSIPG---------------DFGKFSPSLINVSFSNNSFSGELPYELCSG 454
             +      S   P                +    S  L  +   NNS   +LP    S 
Sbjct: 118 VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSS-FLKIIDVDNNSLK-KLPDLPPS- 174

Query: 455 FALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNH 514
             LE +    N     LP  ++N   L  +  D N     + +   +   L+ I    N 
Sbjct: 175 --LEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNS----LKKLPDLPLSLESIVAGNNI 226

Query: 515 FIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT 564
              E  P+      L+ +  D N +   +P    +L  L V      +L 
Sbjct: 227 L--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLP 273

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  148 bits (374), Expect = 2e-38
 Identities = 75/361 (20%), Positives = 144/361 (39%), Gaps = 22/361 (6%)

Query: 12  IPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVR 71
           I   +        + ++    +     E   L+  + ++  N+++       L + R+V 
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 72  YLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGL 131
            L+L    +E  D   F+   ++  L + +N +    P        LT L L  N LS  
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-S 137

Query: 132 IPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLMSN 190
           +P  +F N  KL  L++++N  + ++  +     ++L  L+L++N+ +     D+ L+ +
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPS 193

Query: 191 IQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLS 250
           +    +  N  +     +L     ++ LD   N++ + +     +   L+ L L  N L+
Sbjct: 194 LFHANVSYNLLS-----TLAIPIAVEELDASHNSI-NVVRG--PVNVELTILKLQHNNLT 245

Query: 251 GGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLT 310
                 L N   L E+ LS N L  +I  +       LE L I NN  +  +      + 
Sbjct: 246 D--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 301

Query: 311 KLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNL 370
            L+ L L  NH    +     +   LE L L  N +  T+  +      L +L L  N+ 
Sbjct: 302 TLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV-TLKLS--THHTLKNLTLSHNDW 357

Query: 371 S 371
            
Sbjct: 358 D 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  135 bits (341), Expect = 5e-34
 Identities = 60/363 (16%), Positives = 126/363 (34%), Gaps = 24/363 (6%)

Query: 35  SIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSL 94
            I S +        + +   + +  F F+   L   + +    + +     +   +   +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 95  THLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQ 154
             L+L   ++             +  L +  N +  L P  +F N+  L  L L  N   
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS 136

Query: 155 GKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLK 213
             L   +      LT L ++ N             +++Q ++L +N  T  +   L  + 
Sbjct: 137 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIP 192

Query: 214 NLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFL 273
           +L H ++  N L++     L +   +  L  + N ++         L+ L    L  N L
Sbjct: 193 SLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHNNL 244

Query: 274 SGEISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNHFSGPIPSEIGK 332
           +       + N+  L  + +  N     I       + +L+ L++  N     +      
Sbjct: 245 T---DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP 299

Query: 333 LTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTN 392
           + +L+ LDLS N L   +         L +L L  N++  T+     +  +L    ++ N
Sbjct: 300 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHN 355

Query: 393 QLH 395
              
Sbjct: 356 DWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  113 bits (285), Expect = 7e-27
 Identities = 64/297 (21%), Positives = 100/297 (33%), Gaps = 21/297 (7%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEM-GDLSELQYLSVYNNSLNGA 59
           L +  N I    P     +  LT L L  N    S+P  +  +  +L  LS+ NN+L   
Sbjct: 104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI 162

Query: 60  FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119
                     ++ L L  N L   D    S +PSL H ++ YN L+      +     + 
Sbjct: 163 EDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS-----TLAIPIAVE 214

Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSG 179
            LD S N ++  +   +      L  L L  N      +  +     L  + L+ N+   
Sbjct: 215 ELDASHNSINV-VRGPVNVE---LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK 268

Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNL 239
            +      M  ++ + + NN     +      +  L+ LDL  N L   +         L
Sbjct: 269 IMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRL 326

Query: 240 SFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNN 296
             L L  N +     L LS    L  L LS N         L  N           +
Sbjct: 327 ENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 97.7 bits (243), Expect = 1e-21
 Identities = 70/411 (17%), Positives = 128/411 (31%), Gaps = 26/411 (6%)

Query: 141 GKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNS 200
           G+  Y           +  N+        + +           +   ++N ++V   N++
Sbjct: 3   GQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST 62

Query: 201 FTGQIPSSLGQLKNLQHLDLRMNALNSTIPPE-LGLCTNLSFLALAMNQLSGGLPLSLSN 259
                 + L   + ++ L+L    +   I          +  L +  N +    P    N
Sbjct: 63  MRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121

Query: 260 LSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLY 318
           +  L  L L  N LS  +   +  N  +L +L + NN+    I  +     T LQ L L 
Sbjct: 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLS 179

Query: 319 RNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEI 378
            N  +  +   +  + SL   ++S N LS     TL     +  L    N+++  +    
Sbjct: 180 SNRLTH-VD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG-- 228

Query: 379 GSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSF 438
                L    +  N L       +     L +  +  N     I          L  +  
Sbjct: 229 PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYI 285

Query: 439 SNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRA 498
           SNN     L         L+ L ++ N+    +         L  +  D N      T  
Sbjct: 286 SNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLK 340

Query: 499 FGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGN 549
              H  L  + LS N +           RN++   +D       I  +L +
Sbjct: 341 LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEH 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 84.6 bits (209), Expect = 2e-17
 Identities = 47/234 (20%), Positives = 83/234 (35%), Gaps = 21/234 (8%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L LS N ++  +      + +L   +++ NL      S +     ++ L   +NS+N   
Sbjct: 176 LQLSSNRLTH-VDL--SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVR 227

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
                 L     L L  N L    W    N P L  + L YNEL        +  + L  
Sbjct: 228 GPVNVEL---TILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           L +S N+L  L        +  L+ L+L+ N     +  N  +   L  L L  N     
Sbjct: 283 LYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-T 338

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELG 234
           +   +     ++ + L +N +     S     +N+    +     +  I  +L 
Sbjct: 339 LK--LSTHHTLKNLTLSHNDW--DCNSLRALFRNVARPAVDDADQHCKIDYQLE 388

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 82.7 bits (204), Expect = 9e-17
 Identities = 56/310 (18%), Positives = 99/310 (31%), Gaps = 31/310 (10%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
            ++S+N +S      +     +  LD ++N     +        EL  L + +N+L    
Sbjct: 197 ANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLTDTA 248

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
                N   +  +DL  N LE   +  F  M  L  L +  N L      +      L  
Sbjct: 249 WLL--NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 305

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           LDLS N L  +  ER      +LE L L  N      +  +S    L  L L+ N +   
Sbjct: 306 LDLSHNHLLHV--ERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWDC- 359

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQ----------LKNLQHLDLRMNALNSTIP 230
                 L  N+    + +     +I   L              +     + + ++   + 
Sbjct: 360 -NSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQ 418

Query: 231 PELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEI---SANLIGNWTE 287
              G C+    +    +            L    +L    N L  E+   +   I     
Sbjct: 419 RAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQL 478

Query: 288 LESLQIQNNS 297
           L+ L  + ++
Sbjct: 479 LQGLHAEIDT 488

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 80.4 bits (198), Expect = 4e-16
 Identities = 54/318 (16%), Positives = 95/318 (29%), Gaps = 46/318 (14%)

Query: 286 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQ 345
                + I   +       E   L   + +    +       + +     +E L+L+  Q
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86

Query: 346 LSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-S 403
           +             +  L + FN +   +PP +  ++  L    +  N L   LP  I  
Sbjct: 87  IEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFH 144

Query: 404 RLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPY-------------- 449
               L   S+  NN    I  D  + + SL N+  S+N  +  +                
Sbjct: 145 NTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYN 202

Query: 450 ---ELCSGFALEELTVNGNNFTG--------------------SLPACMRNCSNLNRVRF 486
               L    A+EEL  + N+                            + N   L  V  
Sbjct: 203 LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAW-LLNYPGLVEVDL 261

Query: 487 DGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAE 546
             N+    +   F    RL+ + +S N  +  ++        L  L L  N +   +   
Sbjct: 262 SYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERN 319

Query: 547 LGNLTRLGVLSLDSNELT 564
                RL  L LD N + 
Sbjct: 320 QPQFDRLENLYLDHNSIV 337

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  142 bits (361), Expect = 3e-37
 Identities = 77/349 (22%), Positives = 128/349 (36%), Gaps = 33/349 (9%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           +          +P  I   +    LDL  N  +     E      L+ L +  N ++   
Sbjct: 16  VLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           P   +NL  +R L L  N L+      F+ + +LT L +  N++ +          NL  
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSG 179
           L++  N L   I  R F+ L  LE L L        +     S L  L VLRL       
Sbjct: 133 LEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHL---- 186

Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNL 239
                        +  + + SF          L  L+ L++       T+ P      NL
Sbjct: 187 ------------NINAIRDYSFKR--------LYRLKVLEISHWPYLDTMTPNCLYGLNL 226

Query: 240 SFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFM 299
           + L++    L+    L++ +L  L  L LS N +S  I  +++     L+ +Q+     +
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQ-L 284

Query: 300 GNIPPEI-GLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLS 347
             + P     L  L+ L +  N  +    S    + +LE L L  N L+
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  131 bits (332), Expect = 3e-33
 Identities = 84/353 (23%), Positives = 137/353 (38%), Gaps = 56/353 (15%)

Query: 70  VRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLS 129
            R LDLG N ++T +  +F++ P L  L L  N ++   P       NL  L L  N+L 
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 130 GLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLM 188
            LIP  +FT L  L  L++++N+    L   +   L NL  L +  N             
Sbjct: 94  -LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDN------------- 138

Query: 189 SNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQ 248
               LV + + +F+G        L +L+ L L    L ++IP E                
Sbjct: 139 ---DLVYISHRAFSG--------LNSLEQLTLEKCNL-TSIPTE---------------- 170

Query: 249 LSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGL 308
                  +LS+L  L  L L    ++  I          L+ L+I +  ++  + P    
Sbjct: 171 -------ALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 309 LTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFN 368
              L  L +   + +      +  L  L  L+LS N +S      L  L  L  +QL   
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282

Query: 369 NLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-SRLVNLNKFSVFTNNFS 419
            L+  + P     +  L   +V+ NQL   L E++   + NL    + +N  +
Sbjct: 283 QLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  113 bits (285), Expect = 4e-27
 Identities = 66/352 (18%), Positives = 121/352 (34%), Gaps = 37/352 (10%)

Query: 216 QHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSG 275
           + +          +P   G+ T    L L  N++        ++   L EL L++N +S 
Sbjct: 14  RAVLCHRKRF-VAVPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS- 69

Query: 276 EISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNHFSGPIPSEIGKLT 334
            +      N   L +L +++N     IP  +   L+ L  L +  N     +      L 
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128

Query: 335 SLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQ 393
           +L+ L++  N L          L +L  L L   NL+ +IP E    +  L+   +    
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLN 187

Query: 394 LHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCS 453
           ++                         +I     K    L  +  S+  +   +      
Sbjct: 188 IN-------------------------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 454 GFALEELTVNGNNFTGSLPACM-RNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSG 512
           G  L  L++   N T ++P    R+   L  +    N  +           RL  I+L G
Sbjct: 223 GLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281

Query: 513 NHFIGEISPD-WGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNEL 563
              +  + P  +     L  L +  N+++    +   ++  L  L LDSN L
Sbjct: 282 GQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 91.7 bits (228), Expect = 7e-20
 Identities = 60/266 (22%), Positives = 107/266 (40%), Gaps = 33/266 (12%)

Query: 302 IPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPP-TLWNLTNL 360
           +P   G+ T+ + L L +N        E      LE+L+L+ N +S  + P    NL NL
Sbjct: 26  VPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNL 82

Query: 361 LSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFS 419
            +L L  N L   IP  +   +++L   D++ N++   L      L NL    V  N+  
Sbjct: 83  RTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 420 GSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCS 479
                              S+ +FSG L        +LE+LT+   N T      + +  
Sbjct: 142 -----------------YISHRAFSG-LN-------SLEQLTLEKCNLTSIPTEALSHLH 176

Query: 480 NLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKI 539
            L  +R            +F    RL  + +S   ++  ++P+     NL++L +    +
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236

Query: 540 SGGIPAE-LGNLTRLGVLSLDSNELT 564
           +  +P   + +L  L  L+L  N ++
Sbjct: 237 T-AVPYLAVRHLVYLRFLNLSYNPIS 261

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  134 bits (340), Expect = 2e-35
 Identities = 61/345 (17%), Positives = 109/345 (31%), Gaps = 44/345 (12%)

Query: 66  NLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSL 125
           N  + +   +  + L+    S   +  ++  L L  N L+    + +     L  L+LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 126 NKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDI 185
           N L   +      +L  L  L+L +N  Q      +    ++  L  A N  S  +    
Sbjct: 68  NVLYETLD---LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR-VSCSR 118

Query: 186 GLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNS-TIPPELGLCTNLSFLAL 244
           G     + + L NN  T       G    +Q+LDL++N +++            L  L L
Sbjct: 119 G--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 245 AMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPP 304
             N +   +       ++L  L LS N L+                           + P
Sbjct: 177 QYNFIY-DVK-GQVVFAKLKTLDLSSNKLA--------------------------FMGP 208

Query: 305 EIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQ 364
           E      + ++ L  N     I   +    +LE  DL GN             +    +Q
Sbjct: 209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQ 265

Query: 365 LFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENI-SRLVNL 408
                    +  +     ++            +LP     RL+ L
Sbjct: 266 TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  132 bits (334), Expect = 1e-34
 Identities = 51/348 (14%), Positives = 117/348 (33%), Gaps = 47/348 (13%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
             ++ +++   +     +  N+  LDL+ N       +++   ++L+ L++ +N L    
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL 74

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
                +L  +R LDL  N++      +    PS+  L    N ++          +    
Sbjct: 75  DL--ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSRG--QGKKN 124

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQG-KLSPNVSKLSNLTVLRLATNKFSG 179
           + L+ NK++  + +       +++YL+L  N+      +   +    L  L L  N    
Sbjct: 125 IYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183

Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNL 239
            + G +                             L+ LDL  N L + + PE      +
Sbjct: 184 -VKGQV-------------------------VFAKLKTLDLSSNKL-AFMGPEFQSAAGV 216

Query: 240 SFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFM 299
           ++++L  N+L   +  +L     L    L  N        +       ++++  Q     
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-- 273

Query: 300 GNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLS 347
             +  +      +  L  Y  +    +P       +   + L  +   
Sbjct: 274 -KLTGQNEEECTVPTLGHYGAYCCEDLP----APFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  127 bits (321), Expect = 6e-33
 Identities = 62/333 (18%), Positives = 115/333 (34%), Gaps = 20/333 (6%)

Query: 35  SIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSL 94
           +I     + +  +   V ++SL  A      +   V+ LDL GN L     +  +    L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 95  THLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQ 154
             L+L  N L  E      +   L  LDL+ N +  L           +E L+  +N   
Sbjct: 61  ELLNLSSNVLY-ETLDL-ESLSTLRTLDLNNNYVQEL------LVGPSIETLHAANNNIS 112

Query: 155 GKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTG-QIPSSLGQLK 213
            ++S +         + LA NK +     D G  S +Q ++L  N               
Sbjct: 113 -RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 214 NLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFL 273
            L+HL+L+ N +   +  ++     L  L L+ N+L+  +     + + +  + L +N L
Sbjct: 170 TLEHLNLQYNFI-YDVKGQVVF-AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 274 SGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKL 333
              I    +     LE   ++ N F              +   + +      +  +  + 
Sbjct: 227 V-LIEKA-LRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKK-LTGQNEEE 282

Query: 334 TSLEKLDLSGNQLSGTIP-PTLWNLTNLLSLQL 365
            ++  L   G      +P P    L  L     
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  127 bits (321), Expect = 7e-33
 Identities = 58/311 (18%), Positives = 108/311 (34%), Gaps = 19/311 (6%)

Query: 164 LSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 223
            +   + ++  +     +        N++ ++L  N  +    + L     L+ L+L  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 224 ALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIG 283
            L      +L   + L  L L  N +       L     +  L  ++N +S  +S +   
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCS--- 117

Query: 284 NWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSG-PIPSEIGKLTSLEKLDLS 342
                +++ + NN        + G  +++QYL L  N               +LE L+L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 343 GNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENI 402
            N +   +         L +L L  N L+  + PE  S A +    +  N+L   + + +
Sbjct: 178 YNFIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233

Query: 403 SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTV 462
               NL  F +  N F      DF   +  +  V+            E C+   +  L  
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT---VPTLGH 290

Query: 463 NGNNFTGSLPA 473
            G      LPA
Sbjct: 291 YGAYCCEDLPA 301

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.0 bits (242), Expect = 3e-22
 Identities = 46/264 (17%), Positives = 88/264 (33%), Gaps = 16/264 (6%)

Query: 302 IPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLL 361
           I        + +   +  +     + S      ++++LDLSGN LS      L   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 362 SLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGS 421
            L L  N L      ++ S+++L   D+N N +     + +    ++       NN S  
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-R 113

Query: 422 IPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTG-SLPACMRNCSN 480
           +    G       N+  +NN  +     +      ++ L +  N     +      +   
Sbjct: 114 VSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 481 LNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS 540
           L  +    N       +      +L  + LS N  +  + P++     ++ + L  NK+ 
Sbjct: 171 LEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV 227

Query: 541 GGIPAELGNLTRLGVLSLDSNELT 564
             I   L     L    L  N   
Sbjct: 228 L-IEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.1 bits (232), Expect = 5e-21
 Identities = 42/312 (13%), Positives = 100/312 (32%), Gaps = 40/312 (12%)

Query: 252 GLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTK 311
            +     N +R     ++D+ L  +  A+L  +   ++ L +  N        ++   TK
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 312 LQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLS 371
           L+ L L  N        ++  L++L  LDL+ N +       L    ++ +L    NN+S
Sbjct: 60  LELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

Query: 372 GTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSP 431
             +    G         +  N++      +      +    +  N        +    S 
Sbjct: 113 -RVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 432 SLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQF 491
           +L +++   N    ++  ++     L+ L ++ N     +    ++ + +  +    N+ 
Sbjct: 170 TLEHLNLQYNFIY-DVKGQVVFA-KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 492 TGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGG-IPAELGNL 550
                                      I       +NL +  L  N    G +       
Sbjct: 227 V-------------------------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 551 TRLGVLSLDSNE 562
            R+  ++  + +
Sbjct: 262 QRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 4/96 (4%)

Query: 470 SLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDW-GECRN 528
           ++    +N +     +   +     +         +  + LSGN  + +IS         
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTK 59

Query: 529 LSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT 564
           L  L L  N +      +L +L+ L  L L++N + 
Sbjct: 60  LELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ 93

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  135 bits (341), Expect = 1e-34
 Identities = 73/382 (19%), Positives = 141/382 (36%), Gaps = 35/382 (9%)

Query: 20  SNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQL-SNLRKVRYLDLGGN 78
           +++ ++DL+ N       +    L +LQ+L V   +            L  +  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 79  FLETPDWSKFSNMPSLTHLSLCYNELTLEF-PSFILTC-RNLTYLDLSLNKLSGLIPERL 136
                +   F+ + +L  L+L    L              +L  L L  N +  + P   
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 137 FTNLGKLEYLNLTDNQFQ----------GKLSPNVSKLSNLTVLRLATNKFSGPIPGDIG 186
           F N+ +   L+LT N+ +                + +LS++T+  +          G+  
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 187 LMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGL----------- 235
             ++I  ++L  N F   +            +   + + +  +    G            
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 236 ----CTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESL 291
                + +    L+ +++   L    S+ + L +L L+ N ++ +I  N     T L  L
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKL 328

Query: 292 QIQNNSFMGNIPPEI-GLLTKLQYLFLYRNHFSGPIPSEI-GKLTSLEKLDLSGNQLSGT 349
            +  N F+G+I   +   L KL+ L L  NH    +  +    L +L++L L  NQL  +
Sbjct: 329 NLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK-S 385

Query: 350 IPP-TLWNLTNLLSLQLFFNNL 370
           +P      LT+L  + L  N  
Sbjct: 386 VPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  126 bits (318), Expect = 2e-31
 Identities = 82/387 (21%), Positives = 137/387 (35%), Gaps = 43/387 (11%)

Query: 44  SELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLET-PDWSKFSNMPSLTHLSLCYN 102
           + + Y+ +  NS+        S L+ +++L +           + F  + SL  L L YN
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 103 ELTLEFPSFILT-CRNLTYLDLSLNKL-SGLIPERLFTNLGKLEYLNLTDNQFQGKLSPN 160
           +   +  +       NL  L L+   L   ++    F  L  LE L L DN  + K+ P 
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPA 147

Query: 161 V--SKLSNLTVLRLATNKFSGPIPGDIGLM-----------SNIQLVELFNNSFTGQIPS 207
                +    VL L  NK    I  +  L            S+I L ++       +   
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKS-ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206

Query: 208 SLGQLKNLQHLDLRMNALNSTIPPEL-GLCTNLSFLALAMNQ-------LSGGLPLSLSN 259
           +  +  ++  LDL  N    ++              +L ++                  N
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266

Query: 260 L-------SRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTK 311
                   S +    LS + +   +  ++  ++T+LE L +  N     I       LT 
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTH 324

Query: 312 LQYLFLYRNHFSGPIPSEI-GKLTSLEKLDLSGNQLSGTIPP-TLWNLTNLLSLQLFFNN 369
           L  L L +N     I S +   L  LE LDLS N +   +   +   L NL  L L  N 
Sbjct: 325 LLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQ 382

Query: 370 LSGTIPPEI-GSMASLVAFDVNTNQLH 395
           L  ++P  I   + SL    ++TN   
Sbjct: 383 LK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  103 bits (259), Expect = 7e-24
 Identities = 68/362 (18%), Positives = 123/362 (33%), Gaps = 41/362 (11%)

Query: 237 TNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNN 296
            +++++ L++N ++     S S L  L  L +        I  N     + L  L++  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 297 SFMGNIPPEI-GLLTKLQYLFLYRNHF-SGPIPSEI-GKLTSLEKLDLSGNQLSGTIPPT 353
            F   +       L  L+ L L + +     +       LTSLE L L  N +    P +
Sbjct: 90  QF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 354 LW-NLTNLLSLQLFFNNLSGTIPPEIGSMASLVAF-----------DVNTNQLHGELPEN 401
            + N+     L L FN +  +I  E         F           D+N   L  E   N
Sbjct: 149 FFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 402 ISRLVNLNKFSVFTNNFSGSIPGDF--------------GKFSPSLINVSFSNNSFSGEL 447
             +  ++    +  N F  S+   F                      +   +N       
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 448 PYELCSGFALEELTVNGNNFTGSLPACM-RNCSNLNRVRFDGNQFTGNITRAFGVHPRLD 506
            ++      ++   ++ +    +L   +  + ++L ++    N+       AF     L 
Sbjct: 268 TFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326

Query: 507 FIRLSGNHFIGEISPDWGECRNLSNLQ---LDRNKISGGIPAEL-GNLTRLGVLSLDSNE 562
            + LS N  +G I        NL  L+   L  N I   +  +    L  L  L+LD+N+
Sbjct: 327 KLNLSQNF-LGSIDS--RMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQ 382

Query: 563 LT 564
           L 
Sbjct: 383 LK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 72.9 bits (179), Expect = 7e-14
 Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 7/157 (4%)

Query: 2   DLSHNNISGPIPPAIGTL--SNLTFLDLNNNLFEGSIPSEM-GDLSELQYLSVYNNSLNG 58
              H N   P       L  S +   DL+ +    ++   +    ++L+ L++  N +N 
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINK 313

Query: 59  AFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILT-CRN 117
                   L  +  L+L  NFL + D   F N+  L  L L YN +             N
Sbjct: 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPN 372

Query: 118 LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQ 154
           L  L L  N+L   +P+ +F  L  L+ + L  N + 
Sbjct: 373 LKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 48/287 (16%), Positives = 92/287 (32%), Gaps = 32/287 (11%)

Query: 308 LLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPP-TLWNLTNLLSLQLF 366
           L   + Y+ L  N  +    +   +L  L+ L +        I   T   L++L+ L+L 
Sbjct: 28  LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 367 FNNLSGTIPPEI-GSMASLVAFDVNTNQLHG-ELPENI-SRLVNLNKFSVFTNNFSGSIP 423
           +N     +       +A+L    +    L G  L  N    L +L    +  NN     P
Sbjct: 88  YNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 424 GDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTV-----------NGNNFTGSLP 472
             F         +  + N     +  E    F  +  T+           N         
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 473 ACMRNCSNLNRVRFDGNQFTGNITRAF---GVHPRLDFIRLSGNHFIGEISPDWG----- 524
                 +++  +   GN F  ++ + F       ++  + LS ++ +G            
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 525 -------ECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT 564
                  E   +    L ++KI   + +   + T L  L+L  NE+ 
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  133 bits (335), Expect = 4e-33
 Identities = 75/417 (17%), Positives = 133/417 (31%), Gaps = 96/417 (23%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L++  + ++  +P  +    ++T L + +N    S+P+      EL+ L V  N L  + 
Sbjct: 45  LNVGESGLTT-LPDCLPA--HITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SL 96

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           P     L ++         L             L  L +  N+LT   P        L  
Sbjct: 97  PVLPPGLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLT-SLPVLP---PGLQE 145

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           L +S N+L+ L          +L  L   +NQ    L       S L  L ++ N+ +  
Sbjct: 146 LSVSDNQLASLPAL-----PSELCKLWAYNNQLT-SLPML---PSGLQELSVSDNQLA-- 194

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
                                   +P+   +L  L   + R+ +L +       L + L 
Sbjct: 195 -----------------------SLPTLPSELYKLWAYNNRLTSLPA-------LPSGLK 224

Query: 241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 300
            L ++ N+L+  LP+  S L  L    +S N L+                          
Sbjct: 225 ELIVSGNRLTS-LPVLPSELKELM---VSGNRLT-------------------------- 254

Query: 301 NIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNL 360
           ++P        L  L +YRN  +  +P  +  L+S   ++L GN LS      L  +T+ 
Sbjct: 255 SLPMLPS---GLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310

Query: 361 LSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNN 417
                                 +L       + L        +     + F    N 
Sbjct: 311 PGYSGPIIRFDMAGASAPRETRALH--LAAADWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (280), Expect = 3e-26
 Identities = 75/353 (21%), Positives = 125/353 (35%), Gaps = 94/353 (26%)

Query: 212 LKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDN 271
                 L++  + L +T+P  L    +++ L +  N L+  LP     L  L    +S N
Sbjct: 39  NNGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLTS-LPALPPELRTLE---VSGN 91

Query: 272 FLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIG 331
            L+                          ++P     L +L        H    +P+   
Sbjct: 92  QLT--------------------------SLPVLPPGLLELSIFSNPLTH----LPAL-- 119

Query: 332 KLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNT 391
             + L KL + GNQL+ ++P        L  L +  N L+ ++P     +  L       
Sbjct: 120 -PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPALPSELCKL---WAYN 170

Query: 392 NQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYEL 451
           NQL   LP   S L  L+     ++N   S+P         L  +   NN  +  LP   
Sbjct: 171 NQLT-SLPMLPSGLQELS----VSDNQLASLPTLPS----ELYKLWAYNNRLT-SLPALP 220

Query: 452 CSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLS 511
                L+EL V+GN  T SLP      S L  +   GN+ T                   
Sbjct: 221 SG---LKELIVSGNRLT-SLPVLP---SELKELMVSGNRLT------------------- 254

Query: 512 GNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT 564
                  +         L +L + RN+++  +P  L +L+    ++L+ N L+
Sbjct: 255 ------SLPM---LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 14/115 (12%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L +  N ++  +P ++  LS+ T ++L  N         + +++       Y+  +    
Sbjct: 266 LSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREITSAP---GYSGPIIRFD 321

Query: 61  PFQLSNLRKVRYLDLGGNFLETPD----------WSKFSNMPSLTHLSLCYNELT 105
               S  R+ R L L       P           W  F    +    SL  + L+
Sbjct: 322 MAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLS 376

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  124 bits (314), Expect = 1e-30
 Identities = 87/463 (18%), Positives = 157/463 (33%), Gaps = 55/463 (11%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGD-LSELQYLSVYNNSLNGA 59
           L LS N+IS    P I  LS L  L L++N    S+   +     +L+YL V +N L   
Sbjct: 57  LSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QN 114

Query: 60  FPFQLSNLRKVRYLDLGGNFLET-PDWSKFSNMPSLTHLSLCYNELT------------- 105
                  +  +R+LDL  N  +  P   +F N+  LT L L   +               
Sbjct: 115 ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLS 172

Query: 106 -------------LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQ 152
                         E  S  +    + +L    N L  +        LG L+  N+  N 
Sbjct: 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232

Query: 153 FQGKLSPNVSK--LSNLTVLRLATNKFSGPIPGDIGLMSNIQL-----VELFNNSFTGQI 205
              +             T+L +            + L           + ++N + T +I
Sbjct: 233 ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI 292

Query: 206 P-----SSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNL 260
                  S   LK+L    ++      +      +   ++   L+++       +   + 
Sbjct: 293 DREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP 352

Query: 261 SRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRN 320
           S    L  + N  + +           L++L +Q N    N      +   +  L     
Sbjct: 353 SSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDV 410

Query: 321 HF----SGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPP 376
                 S           S+  L+LS N L+G++   L     +  L L  N +  +IP 
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPK 467

Query: 377 EIGSMASLVAFDVNTNQLHGELPENI-SRLVNLNKFSVFTNNF 418
           ++  + +L   +V +NQL   +P+ +  RL +L    +  N +
Sbjct: 468 DVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  116 bits (291), Expect = 1e-27
 Identities = 81/469 (17%), Positives = 167/469 (35%), Gaps = 32/469 (6%)

Query: 44  SELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNE 103
              + LS+  NS++      +S L ++R L L  N + + D+  F     L +L + +N 
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 104 LTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSK 163
           L        +   +L +LDLS N    L   + F NL KL +L L+  +F+     ++  
Sbjct: 112 LQ-NISCCPMA--SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR---QLDLLP 165

Query: 164 LSNLTVLRLATNKFSGPIPG------DIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQH 217
           +++L +  +  +  S  I G       I   + + LV   N+ F+ Q+  S+  L +LQ 
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 218 LDLRMNALNSTIPPEL--GLCTNLSFLALAMNQLSGGLP-----LSLSNLSRLNELGLSD 270
            ++++N  N          L    + L + +  +                  +  L + +
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 271 NFLSGEISANLIGNWT----ELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPI 326
             ++  I              L    ++N  F+ +      +  ++    L  +      
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 327 PSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVA 386
                  +S   L+ + N  + ++      L  L +L L  N L            ++ +
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSS 404

Query: 387 FDVNTNQL----HGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNS 442
            +     L            +   ++   ++ +N  +GS+   F    P +  +   NN 
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDLHNNR 461

Query: 443 FSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQF 491
               +P ++    AL+EL V  N             ++L  +    N +
Sbjct: 462 IM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  101 bits (254), Expect = 5e-23
 Identities = 85/492 (17%), Positives = 155/492 (31%), Gaps = 76/492 (15%)

Query: 92  PSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDN 151
           P    LSL  N ++      I     L  L LS N++  L    +F     LEYL+++ N
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHN 110

Query: 152 QFQGKLSPNVSKLSNLTVLRLATNKF-SGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLG 210
           + Q  +S     +++L  L L+ N F   P+  + G ++ +  + L    F       + 
Sbjct: 111 RLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167

Query: 211 QLK-NLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQ---LSGGLPLSLSNLSRLNEL 266
            L  +   LDL    +       L +  N + L L  +     S  + +S++ L  L   
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQI-PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 267 GLSDNFLSGEISANLIGN---WTELESLQIQNNSFMGNIPPEIGLL---TKLQYLFLYRN 320
            +  N  + +     +        L ++ +Q+         ++        ++YL +Y  
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 321 HFSGPIPSEIG-----KLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIP 375
             +  I  E        L SL    +       +          +    L  ++      
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 376 PEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFS--PSL 433
               S +S    +   N     + +  S L  L    +  N    +            SL
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSL 405

Query: 434 INVSFSNNSFSGELPYELCSGFA-LEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFT 492
             +  S NS +       C+    +  L ++ N  TGS+                     
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV--------------------- 444

Query: 493 GNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTR 552
                         F  L                  +  L L  N+I   IP ++ +L  
Sbjct: 445 --------------FRCLP---------------PKVKVLDLHNNRIMS-IPKDVTHLQA 474

Query: 553 LGVLSLDSNELT 564
           L  L++ SN+L 
Sbjct: 475 LQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.9 bits (197), Expect = 5e-16
 Identities = 77/490 (15%), Positives = 149/490 (30%), Gaps = 67/490 (13%)

Query: 90  NMPSLTHLSLCYNELTLEFPSFI-LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNL 148
           +   +         L L   S    +    + +D S   L+  +P+ L       + L+L
Sbjct: 4   DRKPIVGSFHFVCALALIVGSMTPFSNELESMVDYSNRNLTH-VPKDLPPRT---KALSL 59

Query: 149 TDNQFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPS 207
           + N    +L     S LS L VLRL+ N                ++  L  + F      
Sbjct: 60  SQNSIS-ELRMPDISFLSELRVLRLSHN----------------RIRSLDFHVF------ 96

Query: 208 SLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQL-SGGLPLSLSNLSRLNEL 266
                ++L++LD+  N L   I        +L  L L+ N      +     NL++L  L
Sbjct: 97  --LFNQDLEYLDVSHNRL-QNISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151

Query: 267 GLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLL--TKLQYLFLYRNHFSG 324
           GLS           +         L + +    G     + +   T L  +F   + FS 
Sbjct: 152 GLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSV 211

Query: 325 PIPSEIGKLTSLE--KLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMA 382
            +   +  L  L+   + L+       +            L +   ++  T    +    
Sbjct: 212 QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271

Query: 383 SLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINV----SF 438
                                    +   +++    +  I  +   +S + +        
Sbjct: 272 FF-------------------WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312

Query: 439 SNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRA 498
            N  F             +    ++ ++       C  + S+   + F  N FT ++ + 
Sbjct: 313 KNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG 372

Query: 499 FGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKI----SGGIPAELGNLTRLG 554
                RL  + L  N  +          +N+S+L+     +    S            + 
Sbjct: 373 CSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431

Query: 555 VLSLDSNELT 564
           VL+L SN LT
Sbjct: 432 VLNLSSNMLT 441

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 74.1 bits (182), Expect = 4e-14
 Identities = 34/158 (21%), Positives = 61/158 (38%), Gaps = 9/158 (5%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLN--- 57
           L+ + N  +  +     TL  L  L L  N  + +          +  L   + SLN   
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLN 416

Query: 58  -GAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCR 116
             A+    +    +  L+L  N L    +      P +  L L  N +    P  +   +
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQ 473

Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQ 154
            L  L+++ N+L   +P+ +F  L  L+Y+ L DN + 
Sbjct: 474 ALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWD 510

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  124 bits (312), Expect = 2e-30
 Identities = 74/467 (15%), Positives = 159/467 (34%), Gaps = 30/467 (6%)

Query: 70  VRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLS 129
              L++  N++     S   ++  L  L + +N +     S     + L YLDLS NKL 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 130 GLIPERLFTNLGKLEYLNLTDNQFQG-KLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLM 188
            +           L++L+L+ N F    +      +S L  L L+T          I  +
Sbjct: 83  KIS----CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 189 SNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQ 248
           +  +++ +   ++          L++     L +    +     +   +  +   L ++ 
Sbjct: 139 NISKVLLVLGETYG--EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 249 LSGGL-----------PLSLSNLSRLNELGLSDNFLSGEISANLIG--NWTELESLQIQN 295
           +   L              L    +L+ L L++   +      ++     T +    I N
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 296 NSFMGNIPPEIG-----LLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTI 350
               G +           L  L    +  + F  P        +++   + + +      
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 351 PPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLH--GELPENISRLVNL 408
                 ++  L L    N L+ T+    G +  L    +  NQL    ++ E  +++ +L
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376

Query: 409 NKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFT 468
            +  +  N+ S         ++ SL++++ S+N  +  +   L     ++ L ++ N   
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIK 434

Query: 469 GSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHF 515
            S+P  +     L  +    NQ        F     L  I L  N +
Sbjct: 435 -SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.4 bits (232), Expect = 2e-20
 Identities = 45/256 (17%), Positives = 92/256 (35%), Gaps = 12/256 (4%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           + L           +  +L  L+   + +++F           S +   +   +      
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELT-LEFPSFILTC-RNL 118
               S +    +LD   N L    +    ++  L  L L  N+L  L   + + T  ++L
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376

Query: 119 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFS 178
             LD+S N +S    +   +    L  LN++ N     +   +     + VL L +NK  
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK 434

Query: 179 GPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTN 238
             IP  +  +  +Q + + +N           +L +LQ + L  N  + +       C  
Sbjct: 435 S-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS-------CPR 486

Query: 239 LSFLALAMNQLSGGLP 254
           + +L+  +N+ S    
Sbjct: 487 IDYLSRWLNKNSQKEQ 502

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 84.9 bits (210), Expect = 1e-17
 Identities = 52/391 (13%), Positives = 118/391 (30%), Gaps = 52/391 (13%)

Query: 193 LVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGG 252
           LV+   N     +P  L   +    L++  N ++     ++   + L  L ++ N++   
Sbjct: 4   LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 253 LPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKL 312
                     L  L LS N                    ++   S              L
Sbjct: 61  DISVFKFNQELEYLDLSHN--------------------KLVKISC--------HPTVNL 92

Query: 313 QYLFLYRNHF-SGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLS 371
           ++L L  N F + PI  E G ++ L+ L LS   L  +    + +L     L +      
Sbjct: 93  KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152

Query: 372 GTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSP 431
               P    +       ++      +    I  +      ++  +N    +  +   +  
Sbjct: 153 EKEDP--EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210

Query: 432 SLI----------NVSFSNNSFSGELPYEL--------CSGFALEELTVNGNNFTGSLPA 473
           S++          N++ +N   +      +           F++  + + G         
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270

Query: 474 CMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQ 533
              +   L+  +   + F    +  + +   ++    + +           +     +L 
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330

Query: 534 LDRNKISGGIPAELGNLTRLGVLSLDSNELT 564
              N ++  +    G+LT L  L L  N+L 
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  117 bits (295), Expect = 2e-29
 Identities = 67/256 (26%), Positives = 115/256 (44%), Gaps = 12/256 (4%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLN--G 58
           +  +   ++  +P  I   S+ T L+L +N  +         L++L  LS+ +N L+  G
Sbjct: 12  IRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 59  AFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELT-LEFPSFILTCRN 117
                      ++YLDL  N + T   S F  +  L HL   ++ L  +   S  L+ RN
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 118 LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNK 176
           L YLD+S      +    +F  L  LE L +  N FQ    P++ ++L NLT L L+  +
Sbjct: 128 LIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 177 FSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPEL--G 234
                P     +S++Q++ + +N+F          L +LQ LD  +N +  T   +    
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI-MTSKKQELQH 245

Query: 235 LCTNLSFLALAMNQLS 250
             ++L+FL L  N  +
Sbjct: 246 FPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  112 bits (281), Expect = 1e-27
 Identities = 60/283 (21%), Positives = 98/283 (34%), Gaps = 35/283 (12%)

Query: 21  NLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFL 80
           + T +  N+     S+P+ +   S    L + +N L          L ++  L L  N L
Sbjct: 8   SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 81  ETPDWSK--FSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFT 138
                         SL +L L +N +     S  L    L +LD   + L  +    +F 
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 139 NLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELF 197
           +L  L YL+++    +      + + LS+L VL++A N F                    
Sbjct: 124 SLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFL--------------- 167

Query: 198 NNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPEL--GLCTNLSFLALAMNQLSGGLPL 255
                   P    +L+NL  LDL    L   + P     L ++L  L ++ N        
Sbjct: 168 --------PDIFTELRNLTFLDLSQCQL-EQLSPTAFNSL-SSLQVLNMSHNNFFSLDTF 217

Query: 256 SLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSF 298
               L+ L  L  S N +       L    + L  L +  N F
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  108 bits (271), Expect = 3e-26
 Identities = 65/308 (21%), Positives = 108/308 (35%), Gaps = 59/308 (19%)

Query: 93  SLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQ 152
           S T +      LT   P+ I +  + T L+L  NKL   +P  +F  L +L  L+L+ N 
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIPS--SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNG 63

Query: 153 --FQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLG 210
             F+G  S +    ++L  L L+ N                             + S+  
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVI-------------------------TMSSNFL 98

Query: 211 QLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSD 270
            L+ L+HLD + + L       +                         +L  L  L +S 
Sbjct: 99  GLEQLEHLDFQHSNLKQMSEFSV-----------------------FLSLRNLIYLDISH 135

Query: 271 NFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNHFSGPIPSE 329
                     +    + LE L++  NSF  N  P+I   L  L +L L +       P+ 
Sbjct: 136 THTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194

Query: 330 IGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEI--GSMASLVAF 387
              L+SL+ L++S N            L +L  L    N++  T   +      +SL   
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFL 253

Query: 388 DVNTNQLH 395
           ++  N   
Sbjct: 254 NLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 55/262 (20%), Positives = 84/262 (32%), Gaps = 54/262 (20%)

Query: 307 GLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLS--GTIPPTLWNLTNLLSLQ 364
           G+ +    L L  N           KLT L KL LS N LS  G    + +  T+L  L 
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 365 LFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPG 424
           L FN +  T+      +  L   D   + L             +++FSVF +        
Sbjct: 85  LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-----------QMSEFSVFLSL------- 125

Query: 425 DFGKFSPSLINVSFSNNSFSGELPYELCSG-FALEELTVNGNNFTGSLPACMRNCSNLNR 483
                  +LI +  S+          + +G  +LE L + GN+F  +             
Sbjct: 126 ------RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLP---------- 168

Query: 484 VRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGEC-RNLSNLQLDRNKISGG 542
                          F     L F+ LS    + ++SP       +L  L +  N     
Sbjct: 169 -------------DIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 543 IPAELGNLTRLGVLSLDSNELT 564
                  L  L VL    N + 
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 31/175 (17%), Positives = 55/175 (31%), Gaps = 14/175 (8%)

Query: 397 ELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNN--SFSGELPYELCSG 454
            +P  I    +  +  + +N       G F K    L  +S S+N  SF G         
Sbjct: 21  SVPTGIP--SSATRLELESNKLQSLPHGVFDKL-TQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 455 FALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNI-TRAFGVHPRLDFIRLSGN 513
            +L+ L ++ N    ++ +       L  + F  +          F     L ++ +S  
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136

Query: 514 HFIGEISPDWGECRNLSNLQ---LDRNKISGGIPAE-LGNLTRLGVLSLDSNELT 564
           H              LS+L+   +  N        +    L  L  L L   +L 
Sbjct: 137 H-TRVAFNGI--FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  120 bits (302), Expect = 2e-29
 Identities = 84/445 (18%), Positives = 168/445 (37%), Gaps = 49/445 (11%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
              +   +      +   L+ LT LD +N+       + +  L+ L  L   +N++    
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITT-- 78

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
              LS    + YL    N L   D    + +  LT+L+   N+LT      +     LTY
Sbjct: 79  -LDLSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTY 131

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           L+ + N L+ +      ++  +L  L+   N+       +V+  + LT L  + NK +  
Sbjct: 132 LNCARNTLTEID----VSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITE- 184

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
              D+     +  +    N+ T ++   L Q   L  LD   N L      ++   T L+
Sbjct: 185 --LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE---IDVTPLTQLT 236

Query: 241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 300
           +   ++N L+    L +S LS+L  L         ++    + + T+L   Q +    + 
Sbjct: 237 YFDCSVNPLT---ELDVSTLSKLTTLHCIQT----DLLEIDLTHNTQLIYFQAEGCRKIK 289

Query: 301 NIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNL 360
            +  ++   T+L  L       +     ++ +   L  L L+  +L+  +  +  + T L
Sbjct: 290 EL--DVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELDVS--HNTKL 341

Query: 361 LSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENIS-----RLVNLNKFSVFT 415
            SL     ++       +G + +L        Q      E ++       V+ +    F 
Sbjct: 342 KSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

Query: 416 NNFSGSIPGDFGKFSPSLINVSFSN 440
           N  +   PGD G +  +   +++ N
Sbjct: 400 NPMN-IEPGDGGVYDQATNTITWEN 423

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  107 bits (269), Expect = 4e-25
 Identities = 72/382 (18%), Positives = 137/382 (35%), Gaps = 49/382 (12%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L    N ++  +   +  L+ LT+L+ + N        ++     L YL+   N+L    
Sbjct: 90  LACDSNKLTN-LD--VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT--- 140

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELT-LEFPSFILTCRNLT 119
              +S+  ++  LD   N   T      +    LT L   +N++T L+        + L 
Sbjct: 141 EIDVSHNTQLTELDCHLNKKITK--LDVTPQTQLTTLDCSFNKITELDVSQ----NKLLN 194

Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSG 179
            L+   N ++ L          +L +L+ + N+       +V+ L+ LT    + N  + 
Sbjct: 195 RLNCDTNNITKLD----LNQNIQLTFLDCSSNKLT---EIDVTPLTQLTYFDCSVNPLTE 247

Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNL 239
               D+  +S +  +              +    N Q +  +          ++   T L
Sbjct: 248 L---DVSTLSKLTTLHCIQTDLL-----EIDLTHNTQLIYFQAEGCRKIKELDVTHNTQL 299

Query: 240 SFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFM 299
             L      ++    L LS   +L  L L++  L+ E+    + + T+L+SL   N    
Sbjct: 300 YLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD---VSHNTKLKSLSCVNAHIQ 352

Query: 300 GNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSL------EKLDLSGNQLSGTIPPT 353
                 +G +  L   F         +P E     SL      + LD  GN +   I P 
Sbjct: 353 DF--SSVGKIPALNNNFEAEGQTIT-MPKETLTNNSLTIAVSPDLLDQFGNPM--NIEPG 407

Query: 354 LWNLTNLLSLQLFFNNLSGTIP 375
              + +  +  + + NLS   P
Sbjct: 408 DGGVYDQATNTITWENLSTDNP 429

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  104 bits (261), Expect = 4e-24
 Identities = 73/374 (19%), Positives = 120/374 (32%), Gaps = 41/374 (10%)

Query: 46  LQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELT 105
                     +          L  +  LD   + +          +  LT L    N +T
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNIT 77

Query: 106 LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLS 165
                 +    NLTYL    NKL+ L      T L KL YLN   N+       +VS+  
Sbjct: 78  -TLD--LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNKLT---KLDVSQNP 127

Query: 166 NLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 225
            LT L  A N  +     +I +  N QL EL  +         +     L  LD   N +
Sbjct: 128 LLTYLNCARNTLT-----EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKI 182

Query: 226 NSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNW 285
                 ++     L+ L    N ++    L L+   +L  L  S N    +++   +   
Sbjct: 183 TEL---DVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSN----KLTEIDVTPL 232

Query: 286 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQ 345
           T+L       N     +   +  L+KL  L   +         ++   T L      G +
Sbjct: 233 TQLTYFDCSVNPL-TELD--VSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCR 286

Query: 346 LSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRL 405
               +   + + T L  L      ++  +   +     LV   +N  +L  EL   +S  
Sbjct: 287 KIKELD--VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHN 338

Query: 406 VNLNKFSVFTNNFS 419
             L   S    +  
Sbjct: 339 TKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 98.2 bits (245), Expect = 4e-22
 Identities = 73/431 (16%), Positives = 137/431 (31%), Gaps = 71/431 (16%)

Query: 62  FQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYL 121
           F   N              +T        + +LT L    + +T    + I     LT L
Sbjct: 15  FPDDNFASEVAAAFEMQATDTIS---EEQLATLTSLDCHNSSIT--DMTGIEKLTGLTKL 69

Query: 122 DLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPI 181
             + N ++ L      +    L YL    N+     + +V+ L+ LT L   TNK +   
Sbjct: 70  ICTSNNITTLD----LSQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLT--- 119

Query: 182 PGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSF 241
             D+     +  +    N+ T      +     L  LD  +N        ++   T L+ 
Sbjct: 120 KLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLN--KKITKLDVTPQTQLTT 174

Query: 242 LALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGN 301
           L  + N+++    L +S    LN L    N ++                           
Sbjct: 175 LDCSFNKITE---LDVSQNKLLNRLNCDTNNITK-------------------------- 205

Query: 302 IPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLL 361
              ++    +L +L    N  +     ++  LT L   D S N L+  +   +  L+ L 
Sbjct: 206 --LDLNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLT 257

Query: 362 SLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGS 421
           +L     +L   I   +     L+ F     +   EL  +++    L          +  
Sbjct: 258 TLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT-E 311

Query: 422 IPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNL 481
           +  D  +  P L+ +  +N   + EL     +   L+ L+    +      + +     L
Sbjct: 312 L--DLSQN-PKLVYLYLNNTELT-ELDVSHNT--KLKSLSCVNAHIQ-DFSS-VGKIPAL 363

Query: 482 NRVRFDGNQFT 492
           N       Q  
Sbjct: 364 NNNFEAEGQTI 374

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  117 bits (296), Expect = 2e-29
 Identities = 72/376 (19%), Positives = 126/376 (33%), Gaps = 90/376 (23%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           +  S   +   +P  +    +   LDL NN     I                        
Sbjct: 36  VQCSDLGLEK-VPKDLPP--DTALLDLQNNKIT-EIKDG--------------------- 70

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
                NL+ +  L L  N +       F+ +  L  L L  N+L  E P  +   + L  
Sbjct: 71  --DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQE 125

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           L +  N+++  + + +F  L ++  + L  N               L    +    F G 
Sbjct: 126 LRVHENEIT-KVRKSVFNGLNQMIVVELGTNP--------------LKSSGIENGAFQG- 169

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
                                          +K L ++ +    + +TIP   GL  +L+
Sbjct: 170 -------------------------------MKKLSYIRIADTNI-TTIPQ--GLPPSLT 195

Query: 241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 300
            L L  N+++     SL  L+ L +LGLS N +S  +    + N   L  L + NN  + 
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNK-LV 253

Query: 301 NIPPEIGLLTKLQYLFLYRNHFSG------PIPSEIGKLTSLEKLDLSGNQLSGT-IPP- 352
            +P  +     +Q ++L+ N+ S         P    K  S   + L  N +    I P 
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

Query: 353 TLWNLTNLLSLQLFFN 368
           T   +    ++QL   
Sbjct: 314 TFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  109 bits (275), Expect = 1e-26
 Identities = 69/315 (21%), Positives = 118/315 (37%), Gaps = 64/315 (20%)

Query: 70  VRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLS 129
              LDL  N +       F N+ +L  L L  N+++   P        L  L LS N+L 
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 130 GLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLM 188
             +PE++   L   + L + +N+   K+  +V + L+ + V+ L TN             
Sbjct: 114 -ELPEKMPKTL---QELRVHENEIT-KVRKSVFNGLNQMIVVELGTNP------------ 156

Query: 189 SNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQ 248
             ++   + N +F G        +K L ++ +    + +TIP   GL  +L+ L L  N+
Sbjct: 157 --LKSSGIENGAFQG--------MKKLSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNK 203

Query: 249 LSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGL 308
           ++     SL  L+ L +LGLS N +S                  + N S           
Sbjct: 204 ITKVDAASLKGLNNLAKLGLSFNSIS-----------------AVDNGSLAN-------- 238

Query: 309 LTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSG------TIPPTLWNLTNLLS 362
              L+ L L  N     +P  +     ++ + L  N +S         P       +   
Sbjct: 239 TPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297

Query: 363 LQLFFNNLSGT-IPP 376
           + LF N +    I P
Sbjct: 298 VSLFSNPVQYWEIQP 312

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.4 bits (225), Expect = 5e-20
 Identities = 67/337 (19%), Positives = 120/337 (35%), Gaps = 50/337 (14%)

Query: 214 NLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFL 273
           +L+ +      L   +P +L    + + L L  N+++        NL  L+ L L +N +
Sbjct: 32  HLRVVQCSDLGL-EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 274 SGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEI-GK 332
           S +IS        +LE L +  N  +  +P    +   LQ L ++ N  +  +   +   
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQ-LKELPE--KMPKTLQELRVHENEITK-VRKSVFNG 143

Query: 333 LTSLEKLDLSGNQL-SGTIPP-TLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVN 390
           L  +  ++L  N L S  I       +  L  +++   N++ TIP   G   SL    ++
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLD 200

Query: 391 TNQLHGELPENI-SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPY 449
            N++  ++       L NL K  +  N+ S                 +  N S +   P 
Sbjct: 201 GNKIT-KVDAASLKGLNNLAKLGLSFNSIS-----------------AVDNGSLAN-TP- 240

Query: 450 ELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVH------P 503
                  L EL +N N     +P  + +   +  V    N  +   +  F          
Sbjct: 241 ------HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293

Query: 504 RLDFIRLSGNHF-IGEISPDWGEC-RNLSNLQLDRNK 538
               + L  N     EI P    C    + +QL   K
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.0 bits (216), Expect = 8e-19
 Identities = 36/185 (19%), Positives = 68/185 (36%), Gaps = 13/185 (7%)

Query: 1   LDLSHNNI-SGPIPP-AIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNG 58
           ++L  N + S  I   A   +  L+++ + +     +IP  +     L  L +  N +  
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITK 206

Query: 59  AFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNL 118
                L  L  +  L L  N +   D    +N P L  L L  N+L  + P  +   + +
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 265

Query: 119 TYLDLSLNKLSGL-----IPERLFTNLGKLEYLNLTDNQFQ-GKLSPNV-SKLSNLTVLR 171
             + L  N +S +      P    T       ++L  N  Q  ++ P+    +     ++
Sbjct: 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325

Query: 172 LATNK 176
           L   K
Sbjct: 326 LGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 81.2 bits (201), Expect = 6e-17
 Identities = 52/265 (19%), Positives = 92/265 (34%), Gaps = 14/265 (5%)

Query: 307 GLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLF 366
            L      L L  N  +     +   L +L  L L  N++S   P     L  L  L L 
Sbjct: 49  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108

Query: 367 FNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNF-SGSIPGD 425
            N L   +P       +L    V+ N++        + L  +    + TN   S  I   
Sbjct: 109 KNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 426 FGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVR 485
             +    L  +  ++ + +  +P  L     L EL ++GN  T    A ++  +NL ++ 
Sbjct: 166 AFQGMKKLSYIRIADTNIT-TIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 486 FDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISG---- 541
              N  +     +    P L  + L+ N  + ++     + + +  + L  N IS     
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSN 281

Query: 542 --GIPAELGNLTRLGVLSLDSNELT 564
               P           +SL SN + 
Sbjct: 282 DFCPPGYNTKKASYSGVSLFSNPVQ 306

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  114 bits (288), Expect = 3e-28
 Identities = 69/264 (26%), Positives = 108/264 (40%), Gaps = 15/264 (5%)

Query: 92  PSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDN 151
            ++  L L  N +T    S +  C NL  L L+ N ++  I E  F++LG LE+L+L+ N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 152 QFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDI--GLMSNIQLVELFNNSFTGQIPSS 208
                LS +    LS+LT L L  N +       +   L     L     ++FT      
Sbjct: 111 YLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 209 LGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGL 268
              L  L+ L++  + L S  P  L    N+S L L M Q    L + +   S +  L L
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229

Query: 269 SDNFLSG-------EISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNH 321
            D  L             N +       +++I + S    +   +  ++ L  L   RN 
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQ 288

Query: 322 FSGPIPSEI-GKLTSLEKLDLSGN 344
               +P  I  +LTSL+K+ L  N
Sbjct: 289 LKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  112 bits (283), Expect = 2e-27
 Identities = 54/279 (19%), Positives = 97/279 (34%), Gaps = 32/279 (11%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEM-GDLSELQYLSVYNNSL--- 56
           LDLS+N I+      +    NL  L L +N    +I  +    L  L++L +  N L   
Sbjct: 57  LDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNL 115

Query: 57  -NGAFPFQLSNLRKVRYLDLGGNFLET-PDWSKFSNMPSLTHLSLCYNELTLEFPSFILT 114
            +  F      L  + +L+L GN  +T  + S FS++  L  L +   +   +       
Sbjct: 116 SSSWF----KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 115 -CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRL 172
               L  L++  + L      +   ++  + +L L   Q    L        S++  L L
Sbjct: 172 GLTFLEELEIDASDLQS-YEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLEL 229

Query: 173 ATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPE 232
                                 EL          +SL +    +++ +   +L   +   
Sbjct: 230 RDTDL-----------DTFHFSELSTGET-----NSLIKKFTFRNVKITDESLFQ-VMKL 272

Query: 233 LGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDN 271
           L   + L  L  + NQL          L+ L ++ L  N
Sbjct: 273 LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  111 bits (280), Expect = 4e-27
 Identities = 67/316 (21%), Positives = 121/316 (38%), Gaps = 24/316 (7%)

Query: 9   SGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLR 68
                 A  +         ++     SIPS  G    ++ L + NN +       L    
Sbjct: 20  EESSNQASLSCDRNGICKGSSGSLN-SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCV 76

Query: 69  KVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKL 128
            ++ L L  N + T +   FS++ SL HL L YN L+    S+     +LT+L+L  N  
Sbjct: 77  NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136

Query: 129 SGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGL 187
             L    LF++L KL+ L + +     K+     + L+ L  L +  +      P  +  
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196

Query: 188 MSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMN 247
           + N+  + L        +   +    +++ L+LR   L++                   +
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT----------------FHFS 240

Query: 248 QLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI- 306
           +LS G   SL        + ++D  L       L+   + L  L+   N    ++P  I 
Sbjct: 241 ELSTGETNSLIKKFTFRNVKITDESLFQV--MKLLNQISGLLELEFSRNQLK-SVPDGIF 297

Query: 307 GLLTKLQYLFLYRNHF 322
             LT LQ ++L+ N +
Sbjct: 298 DRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.4 bits (209), Expect = 6e-18
 Identities = 59/283 (20%), Positives = 108/283 (38%), Gaps = 20/283 (7%)

Query: 198 NNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSL 257
           + S    IPS L   + ++ LDL  N +      +L  C NL  L L  N ++     S 
Sbjct: 40  SGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96

Query: 258 SNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI--GLLTKLQYL 315
           S+L  L  L LS N+LS  +S++     + L  L +  N +   +        LTKLQ L
Sbjct: 97  SSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQIL 154

Query: 316 FLYRNHFSGPIPSEI-GKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTI 374
            +        I  +    LT LE+L++  + L    P +L ++ N+  L L        +
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LL 213

Query: 375 PPEI-GSMASLVAFDVNTNQLHGELPENISRLVNLN-------KFSVFTNNFSGSIPGDF 426
                   +S+   ++    L       +S     +       +    T+     +    
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273

Query: 427 GKFSPSLINVSFSNNSFSGELPYELCSGF-ALEELTVNGNNFT 468
            +    L+ + FS N     +P  +     +L+++ ++ N + 
Sbjct: 274 NQI-SGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 76.7 bits (189), Expect = 3e-15
 Identities = 47/268 (17%), Positives = 94/268 (35%), Gaps = 18/268 (6%)

Query: 307 GLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPP-TLWNLTNLLSLQL 365
           GL   ++ L L  N  +    S++ +  +L+ L L+ N ++ TI   +  +L +L  L L
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDL 107

Query: 366 FFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-SRLVNLNKFSVFTNNFSGSIP 423
            +N LS  +       ++SL   ++  N        ++ S L  L    V   +    I 
Sbjct: 108 SYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 424 -GDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLN 482
             DF      L  +    +      P  L S   +  L ++       L   +   S++ 
Sbjct: 167 RKDFAGL-TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE 225

Query: 483 RVRFDGNQFTGN--------ITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQL 534
            +                   T +         ++++    + ++     +   L  L+ 
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES-LFQVMKLLNQISGLLELEF 284

Query: 535 DRNKISGGIPAE-LGNLTRLGVLSLDSN 561
            RN++   +P      LT L  + L +N
Sbjct: 285 SRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 66.7 bits (163), Expect = 4e-12
 Identities = 24/155 (15%), Positives = 58/155 (37%), Gaps = 20/155 (12%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGD-LSELQYLSVYNNSLNGA 59
           L++  +++    P ++ ++ N++ L L+       +     D  S ++ L + +  L+  
Sbjct: 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT- 236

Query: 60  FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119
             F  S L                + +      +  ++ +    L  +    +     L 
Sbjct: 237 --FHFSELSTG-------------ETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLL 280

Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQ 154
            L+ S N+L   +P+ +F  L  L+ + L  N + 
Sbjct: 281 ELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 40/245 (16%), Positives = 78/245 (31%), Gaps = 55/245 (22%)

Query: 326 IPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEI-GSMASL 384
           IPS +    +++ LDLS N+++      L    NL +L L  N ++ TI  +   S+ SL
Sbjct: 46  IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSL 102

Query: 385 VAFDVNTNQLHGELPENI-SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSF 443
              D++ N L   L  +    L +L   ++  N +              L  +   N   
Sbjct: 103 EHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161

Query: 444 SGELPYELCSGF-ALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVH 502
             ++  +  +G   LEEL ++ ++     P  +++  N++ +     Q            
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI---------- 211

Query: 503 PRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNE 562
                  L                                        + +  L L   +
Sbjct: 212 ------LLLEIFV--------------------------------DVTSSVECLELRDTD 233

Query: 563 LTGKN 567
           L   +
Sbjct: 234 LDTFH 238

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  112 bits (281), Expect = 1e-26
 Identities = 67/256 (26%), Positives = 106/256 (41%), Gaps = 19/256 (7%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSL---- 56
           +  +   +S  +P  I   SN  +L+L  N  +         L  L+ L +  NS+    
Sbjct: 59  VVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE 115

Query: 57  NGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILT-C 115
            GAF    + L  +  L+L  N+L       F  +  L  L L  N +    PS+     
Sbjct: 116 VGAF----NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRV 170

Query: 116 RNLTYLDLS-LNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLAT 174
            +L  LDL  L KL   I E  F  L  L+YLNL     +    PN++ L  L  L ++ 
Sbjct: 171 PSLMRLDLGELKKLEY-ISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSG 227

Query: 175 NKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPE-L 233
           N F    PG    +S+++ + + N+  +    ++   L +L  L+L  N L S++P +  
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL-SSLPHDLF 286

Query: 234 GLCTNLSFLALAMNQL 249
                L  L L  N  
Sbjct: 287 TPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  110 bits (276), Expect = 4e-26
 Identities = 67/307 (21%), Positives = 111/307 (36%), Gaps = 60/307 (19%)

Query: 92  PSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDN 151
              + +      L+ E P  I +  N  YL+L  N +   I    F +L  LE L L  N
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIPS--NTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRN 109

Query: 152 QFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLG 210
             + ++     + L++L  L L  N                 L  + + +F         
Sbjct: 110 SIR-QIEVGAFNGLASLNTLELFDN----------------WLTVIPSGAFEY------- 145

Query: 211 QLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSD 270
            L  L+ L LR N +  +IP                         + + +  L  L L +
Sbjct: 146 -LSKLRELWLRNNPI-ESIPSY-----------------------AFNRVPSLMRLDLGE 180

Query: 271 NFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEI 330
                 IS         L+ L +   +      P +  L  L+ L +  NHF    P   
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSF 238

Query: 331 GKLTSLEKLDLSGNQLSGTIPP-TLWNLTNLLSLQLFFNNLSGTIPPEI-GSMASLVAFD 388
             L+SL+KL +  +Q+S  I       L +L+ L L  NNLS ++P ++   +  LV   
Sbjct: 239 HGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELH 296

Query: 389 VNTNQLH 395
           ++ N  +
Sbjct: 297 LHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.8 bits (223), Expect = 3e-19
 Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 6/156 (3%)

Query: 1   LDLSHNNISGPIPPAI-GTLSNLTFLDLNNNLFEGSIPSEM-GDLSELQYLSVYNNSLNG 58
           L L +N I   IP      + +L  LDL        I       L  L+YL++   ++  
Sbjct: 152 LWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210

Query: 59  AFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNL 118
                 + L  +  L++ GN         F  + SL  L +  ++++L   +      +L
Sbjct: 211 MPNL--TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268

Query: 119 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQ 154
             L+L+ N LS L P  LFT L  L  L+L  N + 
Sbjct: 269 VELNLAHNNLSSL-PHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.4 bits (183), Expect = 3e-14
 Identities = 50/266 (18%), Positives = 84/266 (31%), Gaps = 58/266 (21%)

Query: 302 IPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPP-TLWNLTNL 360
           +P   G+ +  +YL L  N+           L  LE L L  N +   I       L +L
Sbjct: 69  VPQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASL 125

Query: 361 LSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-SRLVNLNKFSVFTNNF 418
            +L+LF N L+  IP      ++ L    +  N +   +P    +R+ +L +  +     
Sbjct: 126 NTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKK 183

Query: 419 SGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNC 478
              I                   +F G L         L+ L +   N    +P  +   
Sbjct: 184 LEYIS----------------EGAFEG-LF-------NLKYLNLGMCNIK-DMPN-LTPL 217

Query: 479 SNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNK 538
             L  +   GN F                  +    F G          +L  L +  ++
Sbjct: 218 VGLEELEMSGNHFP----------------EIRPGSFHG--------LSSLKKLWVMNSQ 253

Query: 539 ISGGIPAELGNLTRLGVLSLDSNELT 564
           +S         L  L  L+L  N L+
Sbjct: 254 VSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 43/255 (16%), Positives = 81/255 (31%), Gaps = 55/255 (21%)

Query: 311 KLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNL 370
           +   +   R   S  +P  I   ++   L+L  N +      T  +L +L  LQL  N++
Sbjct: 55  QFSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 371 SGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFS 430
              I           AF+             ++ L  L       +N+   IP       
Sbjct: 112 R-QIEVG--------AFN------------GLASLNTLE----LFDNWLTVIP------- 139

Query: 431 PSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVR-FDGN 489
                    + +F   L         L EL +  N              +L R+   +  
Sbjct: 140 ---------SGAFEY-LS-------KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK 182

Query: 490 QFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGN 549
           +       AF     L ++ L   + I ++ P+      L  L++  N      P     
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCN-IKDM-PNLTPLVGLEELEMSGNHFPEIRPGSFHG 240

Query: 550 LTRLGVLSLDSNELT 564
           L+ L  L + +++++
Sbjct: 241 LSSLKKLWVMNSQVS 255

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  107 bits (269), Expect = 8e-26
 Identities = 68/375 (18%), Positives = 117/375 (31%), Gaps = 95/375 (25%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           +  S   +   +P  I    + T LDL NN     +  +                     
Sbjct: 38  VQCSDLGLKA-VPKEISP--DTTLLDLQNNDIS-ELRKD--------------------- 72

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
                 L+ +  L L  N +       FS +  L  L +  N L  E P  +    +L  
Sbjct: 73  --DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVE 127

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQ-GKLSPNVSKLSNLTVLRLATNKFSG 179
           L +  N++   +P+ +F+ L  +  + +  N  +     P       L  LR++  K + 
Sbjct: 128 LRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT- 185

Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNL 239
                                    IP  L   + L  L L  N +   I  E       
Sbjct: 186 ------------------------GIPKDL--PETLNELHLDHNKI-QAIELE------- 211

Query: 240 SFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFM 299
                            L   S+L  LGL  N +   I    +     L  L + NN  +
Sbjct: 212 ----------------DLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNK-L 253

Query: 300 GNIPPEIGLLTKLQYLFLYRNHFSGPIPSEI-------GKLTSLEKLDLSGNQLS-GTIP 351
             +P  +  L  LQ ++L+ N+ +  +            K      + L  N +    + 
Sbjct: 254 SRVPAGLPDLKLLQVVYLHTNNITK-VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312

Query: 352 P-TLWNLTNLLSLQL 365
           P T   +T+ L++Q 
Sbjct: 313 PATFRCVTDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 81.2 bits (201), Expect = 6e-17
 Identities = 32/185 (17%), Positives = 70/185 (37%), Gaps = 14/185 (7%)

Query: 1   LDLSHNNI-SGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGA 59
           +++  N + +    P       L +L ++       IP ++     L  L + +N +   
Sbjct: 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAI 208

Query: 60  FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119
               L    K+  L LG N +   +    S +P+L  L L  N+L+   P+ +   + L 
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQ 267

Query: 120 YLDLSLNKLSGLIPERLFTNLG------KLEYLNLTDNQFQ-GKLSPNV-SKLSNLTVLR 171
            + L  N ++  +    F  +G          ++L +N     ++ P     +++   ++
Sbjct: 268 VVYLHTNNITK-VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326

Query: 172 LATNK 176
               K
Sbjct: 327 FGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 56/271 (20%), Positives = 89/271 (32%), Gaps = 19/271 (7%)

Query: 302 IPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPP-TLWNLTNL 360
           +P EI        L L  N  S     +   L  L  L L  N++S  I       L  L
Sbjct: 48  VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKL 104

Query: 361 LSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSG 420
             L +  N+L   IPP     +SLV   ++ N++        S L N+N   +  N    
Sbjct: 105 QKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161

Query: 421 SIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSN 480
           S           L  +  S    +  +P +L     L EL ++ N         +   S 
Sbjct: 162 SGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPE--TLNELHLDHNKIQAIELEDLLRYSK 218

Query: 481 LNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS 540
           L R+    NQ       +    P L  + L  N  +  +     + + L  + L  N I+
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNIT 277

Query: 541 GGIPAE-------LGNLTRLGVLSLDSNELT 564
             +                   +SL +N + 
Sbjct: 278 -KVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  107 bits (268), Expect = 5e-25
 Identities = 64/283 (22%), Positives = 105/283 (37%), Gaps = 38/283 (13%)

Query: 20  SNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNF 79
           +  + +          +P  +   +  + L+++ N +         +LR +  L L  N 
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 80  LETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTC-RNLTYLDLSLNKLSGLIPERLFT 138
           + T +   F+ + +L  L L  N LT   P+        L  L L  N +   IP   F 
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFN 157

Query: 139 NLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELF 197
            +  L  L+L + +    +S      LSNL  L LA                        
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR------------------- 198

Query: 198 NNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPEL--GLCTNLSFLALAMNQLSGGLPL 255
                 +IP +L  L  L  LDL  N L S I P    GL  +L  L +  +Q+      
Sbjct: 199 ------EIP-NLTPLIKLDELDLSGNHL-SAIRPGSFQGL-MHLQKLWMIQSQIQVIERN 249

Query: 256 SLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSF 298
           +  NL  L E+ L+ N L+  +  +L      LE + + +N +
Sbjct: 250 AFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  106 bits (267), Expect = 6e-25
 Identities = 67/307 (21%), Positives = 107/307 (34%), Gaps = 60/307 (19%)

Query: 92  PSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDN 151
              + +      L  E P  I T  N   L+L  N++   I    F +L  LE L L+ N
Sbjct: 43  NQFSKVICVRKNLR-EVPDGIST--NTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRN 98

Query: 152 QFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLG 210
             +  +     + L+NL  L L  N                +L  + N +F         
Sbjct: 99  HIR-TIEIGAFNGLANLNTLELFDN----------------RLTTIPNGAFVY------- 134

Query: 211 QLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSD 270
            L  L+ L LR N +  +IP                         + + +  L  L L +
Sbjct: 135 -LSKLKELWLRNNPI-ESIPSY-----------------------AFNRIPSLRRLDLGE 169

Query: 271 NFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEI 330
                 IS       + L  L +   +      P +  L KL  L L  NH S   P   
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGNHLSAIRPGSF 227

Query: 331 GKLTSLEKLDLSGNQLSGTIPP-TLWNLTNLLSLQLFFNNLSGTIPPEI-GSMASLVAFD 388
             L  L+KL +  +Q+   I      NL +L+ + L  NNL+  +P ++   +  L    
Sbjct: 228 QGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIH 285

Query: 389 VNTNQLH 395
           ++ N  +
Sbjct: 286 LHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  104 bits (261), Expect = 3e-24
 Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 8/204 (3%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEM-GDLSELQYLSVYNNSLNGA 59
           L LS N+I      A   L+NL  L+L +N    +IP+     LS+L+ L + NN +   
Sbjct: 93  LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESI 151

Query: 60  FPFQLSNLRKVRYLDLGG-NFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNL 118
             +  + +  +R LDLG    L       F  + +L +L+L    L  E P+       L
Sbjct: 152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNL-TPLIKL 209

Query: 119 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKF 177
             LDLS N LS  I    F  L  L+ L +  +Q Q  +  N    L +L  + LA N  
Sbjct: 210 DELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNL 267

Query: 178 SGPIPGDIGLMSNIQLVELFNNSF 201
           +         + +++ + L +N +
Sbjct: 268 TLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 96.7 bits (241), Expect = 1e-21
 Identities = 55/258 (21%), Positives = 96/258 (37%), Gaps = 12/258 (4%)

Query: 189 SNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQ 248
           +    V     +   ++P  +    N + L+L  N +            +L  L L+ N 
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 249 LSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI-G 307
           +      + + L+ LN L L DN L+  I        ++L+ L ++NN    +IP     
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFN 157

Query: 308 LLTKLQYLFLYRNHFSGPIPSEI-GKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLF 366
            +  L+ L L        I       L++L  L+L+   L     P L  L  L  L L 
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLS 215

Query: 367 FNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGD 425
            N+LS  I P     +  L    +  +Q+          L +L + ++  NN +  +P D
Sbjct: 216 GNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHD 273

Query: 426 FGKFSPSLINVSFSNNSF 443
                  L  +   +N +
Sbjct: 274 LFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.5 bits (178), Expect = 9e-14
 Identities = 54/240 (22%), Positives = 97/240 (40%), Gaps = 12/240 (5%)

Query: 302 IPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPP-TLWNLTNL 360
           +P   G+ T  + L L+ N       +    L  LE L LS N +  TI       L NL
Sbjct: 58  VPD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANL 114

Query: 361 LSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-SRLVNLNKFSVFTNNF 418
            +L+LF N L+ TIP      ++ L    +  N +   +P    +R+ +L +  +     
Sbjct: 115 NTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKR 172

Query: 419 SGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNC 478
              I     +   +L  ++ +  +   E+P  L     L+EL ++GN+ +   P   +  
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGL 230

Query: 479 SNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPD-WGECRNLSNLQLDRN 537
            +L ++    +Q       AF     L  I L+ N+ +  +  D +    +L  + L  N
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 48/240 (20%), Positives = 80/240 (33%), Gaps = 54/240 (22%)

Query: 326 IPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLV 385
           +P  I   T+   L+L  NQ+      +  +L +L  LQL  N++  TI           
Sbjct: 58  VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIG-------- 106

Query: 386 AFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG 445
           AF               + L NLN   +F N  +                 +  N +F  
Sbjct: 107 AF---------------NGLANLNTLELFDNRLT-----------------TIPNGAFVY 134

Query: 446 ELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVR-FDGNQFTGNITRAFGVHPR 504
            L         L+EL +  N              +L R+   +  + +     AF     
Sbjct: 135 -LS-------KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186

Query: 505 LDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT 564
           L ++ L+  + + EI P+      L  L L  N +S   P     L  L  L +  +++ 
Sbjct: 187 LRYLNLAMCN-LREI-PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  107 bits (268), Expect = 9e-25
 Identities = 79/396 (19%), Positives = 134/396 (33%), Gaps = 51/396 (12%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
              + N     +   +  ++  + L LN      S+P  +    ++  L +  N+L  + 
Sbjct: 42  PGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNAL-ISL 95

Query: 61  PFQLSNLRKVRYLDLGGNFLET-PDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119
           P   ++L    YLD   N L T P+        SL HL +  N+LT   P        L 
Sbjct: 96  PELPASL---EYLDACDNRLSTLPE-----LPASLKHLDVDNNQLT-MLPELP---ALLE 143

Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSG 179
           Y++   N+L+ L PE        LE L++ +NQ    L        +L  L ++TN    
Sbjct: 144 YINADNNQLTML-PEL----PTSLEVLSVRNNQLT-FLPE---LPESLEALDVSTNLLES 194

Query: 180 PIPGDIGLMSNIQLVELF----NNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGL 235
            +P       + +  E+F     N  T  IP ++  L     + L  N L+S I   L  
Sbjct: 195 -LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 236 CTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQN 295
            T            S        N            +      +++   W   E  +   
Sbjct: 253 QTAQPDYHGPRIYFSM--SDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEE-HA 309

Query: 296 NSFMGNIPPEIGLLTKLQYLFLYRNH--FSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPT 353
           N+F          L +L      RN   F   + + + KL++  +L      ++     +
Sbjct: 310 NTFSAF-------LDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATES 362

Query: 354 -----LWNLTNLLSLQLFFNNLSGTIPPEIGSMASL 384
                     NL    L      G    + G++ SL
Sbjct: 363 CEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSL 398

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  106 bits (265), Expect = 3e-24
 Identities = 54/309 (17%), Positives = 105/309 (33%), Gaps = 44/309 (14%)

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLS-PNVSKLSNLTVLRLATNKFSG 179
            +   N +SG      F+   K E   L        +S      ++  + L+L     S 
Sbjct: 15  QNSFYNTISG-TYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS 73

Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLK-----------------NLQHLDLRM 222
            +P ++     I ++E+  N+    +P     L+                 +L+HLD+  
Sbjct: 74  -LPDNLP--PQITVLEITQNALI-SLPELPASLEYLDACDNRLSTLPELPASLKHLDVDN 129

Query: 223 NALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLI 282
           N L + +P        L ++    NQL+  LP   ++L  L+   + +N L+  +     
Sbjct: 130 NQL-TMLPELPA---LLEYINADNNQLTM-LPELPTSLEVLS---VRNNQLT-FLPELP- 179

Query: 283 GNWTELESLQIQNNSFMGNIPPEIGLLTKLQ----YLFLYRNHFSGPIPSEIGKLTSLEK 338
                LE+L +  N  + ++P         +    +     N  +  IP  I  L     
Sbjct: 180 ---ESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCT 234

Query: 339 LDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL 398
           + L  N LS  I  +L   T           +  ++     +       D  T       
Sbjct: 235 IILEDNPLSSRIRESLSQQTAQPDYHG--PRIYFSMSDGQQNTLHRPLADAVTAWFPENK 292

Query: 399 PENISRLVN 407
             ++S++ +
Sbjct: 293 QSDVSQIWH 301

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 96.6 bits (240), Expect = 3e-21
 Identities = 62/318 (19%), Positives = 107/318 (33%), Gaps = 83/318 (26%)

Query: 253 LPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSF--MGNIPPEIGLLT 310
           + L ++N   L++     N +S    A+    W + E   +   +     ++  E  L+ 
Sbjct: 3   IMLPINNNFSLSQN-SFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKEC-LIN 59

Query: 311 KLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNL 370
           +   L L R + S  +P  +     +  L+++ N L  ++P    +L  L       N L
Sbjct: 60  QFSELQLNRLNLSS-LPDNLPP--QITVLEITQNALI-SLPELPASLEYL---DACDNRL 112

Query: 371 SGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFS 430
           S T+P    S+  L   DV+ NQL   LPE  + L  +N                     
Sbjct: 113 S-TLPELPASLKHL---DVDNNQLT-MLPELPALLEYIN--------------------- 146

Query: 431 PSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQ 490
                    NN  +  LP    S   LE L+V  N  T  LP    +   L+        
Sbjct: 147 -------ADNNQLT-MLPELPTS---LEVLSVRNNQLT-FLPELPESLEALD-------- 186

Query: 491 FTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSN----LQLDRNKISGGIPAE 546
                              +S N  +  +        +        +   N+I+  IP  
Sbjct: 187 -------------------VSTNL-LESLPAVPVRNHHSEETEIFFRCRENRITH-IPEN 225

Query: 547 LGNLTRLGVLSLDSNELT 564
           + +L     + L+ N L+
Sbjct: 226 ILSLDPTCTIILEDNPLS 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 92.3 bits (229), Expect = 6e-20
 Identities = 60/349 (17%), Positives = 111/349 (31%), Gaps = 34/349 (9%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L+++ N +   +P       +L +LD  +N    ++P      + L++L V NN L    
Sbjct: 85  LEITQNALI-SLPELPA---SLEYLDACDNRLS-TLPEL---PASLKHLDVDNNQLT-ML 135

Query: 61  PFQLSNLRKVRYLDLGGNFLET-PDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119
           P   + L     ++   N L   P+        SL  LS+  N+LT   P       +L 
Sbjct: 136 PELPALLEY---INADNNQLTMLPEL-----PTSLEVLSVRNNQLT-FLPELP---ESLE 183

Query: 120 YLDLSLNKLSGL--IPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKF 177
            LD+S N L  L  +P R   +     +    +N+    +  N+  L     + L  N  
Sbjct: 184 ALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242

Query: 178 SGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCT 237
           S  I   +   +           F+          +         +A+ +  P       
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSD------GQQNTLHRPLADAVTAWFPENKQSDV 296

Query: 238 NLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNS 297
           +  + A    + +      L  LS        +     E  A  +   +    L+ Q+ +
Sbjct: 297 SQIWHAFEHEEHANTFSAFLDRLSDTVS--ARNTSGFREQVAAWLEKLSASAELRQQSFA 354

Query: 298 FMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQL 346
              +          L +  L +        SE         L   G ++
Sbjct: 355 VAADATESCEDRVALTWNNLRKTLLV-HQASEGLFDNDTGALLSLGREM 402

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  103 bits (258), Expect = 1e-24
 Identities = 53/209 (25%), Positives = 84/209 (40%), Gaps = 16/209 (7%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEM-GDLSELQYLSVYNNSL--- 56
           + L  N IS     +     NLT L L++N+    I +     L+ L+ L + +N+    
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 57  --NGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILT 114
                F      L ++  L L    L+      F  + +L +L L  N L    P     
Sbjct: 96  VDPATF----HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 115 -CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRL 172
              NLT+L L  N++S  +PER F  L  L+ L L  N+    + P+    L  L  L L
Sbjct: 151 DLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYL 208

Query: 173 ATNKFSGPIPGDIGLMSNIQLVELFNNSF 201
             N  S      +  +  +Q + L +N +
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 97.8 bits (244), Expect = 8e-23
 Identities = 54/218 (24%), Positives = 78/218 (35%), Gaps = 8/218 (3%)

Query: 35  SIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSL 94
           ++P  +   +  Q + ++ N ++          R +  L L  N L   D + F+ +  L
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 95  THLSLCYNELTLEFPSFILT-CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQF 153
             L L  N                L  L L    L   +   LF  L  L+YL L DN  
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 154 QGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQL 212
           Q  L  +    L NLT L L  N+ S         + ++  + L  N      P +   L
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 213 KNLQHLDLRMNALNSTIPPE-LGLCTNLSFLALAMNQL 249
             L  L L  N L S +P E L     L +L L  N  
Sbjct: 201 GRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 89.3 bits (222), Expect = 5e-20
 Identities = 50/225 (22%), Positives = 82/225 (36%), Gaps = 11/225 (4%)

Query: 198 NNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSL 257
                  +P  +      Q + L  N ++         C NL+ L L  N L+     + 
Sbjct: 20  QQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 258 SNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLF 316
           + L+ L +L LSDN     +          L +L +        + P +   L  LQYL+
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLY 135

Query: 317 LYRNHFSGPIPSEI-GKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIP 375
           L  N     +P +    L +L  L L GN++S         L +L  L L  N ++  + 
Sbjct: 136 LQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVH 193

Query: 376 PEI-GSMASLVAFDVNTNQLHGELPENI-SRLVNLNKFSVFTNNF 418
           P     +  L+   +  N L   LP    + L  L    +  N +
Sbjct: 194 PHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 88.5 bits (220), Expect = 1e-19
 Identities = 43/156 (27%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 1   LDLSHNNISGPIPP-AIGTLSNLTFLDLNNNLFEGSIPSEM-GDLSELQYLSVYNNSLNG 58
           LDLS N     + P     L  L  L L+    +  +   +   L+ LQYL + +N+L  
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA 143

Query: 59  AFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNL 118
                  +L  + +L L GN + +     F  + SL  L L  N +    P        L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 119 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQ 154
             L L  N LS  +P      L  L+YL L DN + 
Sbjct: 204 MTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.3 bits (183), Expect = 6e-15
 Identities = 52/268 (19%), Positives = 88/268 (32%), Gaps = 57/268 (21%)

Query: 227 STIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWT 286
             +P   G+      + L  N++S     S      L  L L  N L+  I A       
Sbjct: 24  QAVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLA 80

Query: 287 ELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNHFSGPIPSEI-GKLTSLEKLDLSGN 344
            LE L + +N+ + ++ P     L +L  L L R      +   +   L +L+ L L  N
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDN 139

Query: 345 QLSGTIPPTLW-NLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENIS 403
            L   +P   + +L NL  L L  N +S ++P          AF                
Sbjct: 140 ALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPER--------AFR--------------- 174

Query: 404 RLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVN 463
            L +L++  +  N  +                     ++F   L         L  L + 
Sbjct: 175 GLHSLDRLLLHQNRVA-----------------HVHPHAFRD-LG-------RLMTLYLF 209

Query: 464 GNNFTGSLPACMRNCSNLNRVRFDGNQF 491
            NN +      +     L  +R + N +
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 45/211 (21%), Positives = 75/211 (35%), Gaps = 8/211 (3%)

Query: 307 GLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPP-TLWNLTNLLSLQL 365
           G+    Q +FL+ N  S    +      +L  L L  N L+  I       L  L  L L
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDL 87

Query: 366 FFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-SRLVNLNKFSVFTNNFSGSIP 423
             N    ++ P     +  L    ++   L  EL   +   L  L    +  N    ++P
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALP 145

Query: 424 GDFGKFSPSLINVSFSNNSFSGELPYELCSGF-ALEELTVNGNNFTGSLPACMRNCSNLN 482
            D  +   +L ++    N  S  +P     G  +L+ L ++ N      P   R+   L 
Sbjct: 146 DDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 483 RVRFDGNQFTGNITRAFGVHPRLDFIRLSGN 513
            +    N  +   T A      L ++RL+ N
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 46/241 (19%), Positives = 75/241 (31%), Gaps = 54/241 (22%)

Query: 326 IPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLV 385
           +P  I    + +++ L GN++S     +     NL  L L  N L+  I           
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAA-------- 74

Query: 386 AFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG 445
           AF               + L  L +  +  N    S+                   +F G
Sbjct: 75  AF---------------TGLALLEQLDLSDNAQLRSVD----------------PATFHG 103

Query: 446 ELPYELCSGFALEELTVNGNNFTGSLPACM-RNCSNLNRVRFDGNQFTGNITRAFGVHPR 504
            L         L  L ++       L   + R  + L  +    N         F     
Sbjct: 104 -LG-------RLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154

Query: 505 LDFIRLSGNHFIGEISPDW-GECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNEL 563
           L  + L GN  I  +         +L  L L +N+++   P    +L RL  L L +N L
Sbjct: 155 LTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 564 T 564
           +
Sbjct: 214 S 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 32/171 (18%), Positives = 57/171 (33%), Gaps = 8/171 (4%)

Query: 397 ELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGF- 455
            +P  I       +  +  N  S      F     +L  +   +N  +  +     +G  
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRAC-RNLTILWLHSNVLA-RIDAAAFTGLA 80

Query: 456 ALEELTVNGNNFTGSLPACM-RNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNH 514
            LE+L ++ N    S+          L+ +  D           F     L ++ L  N 
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140

Query: 515 FIGEISPD-WGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT 564
            +  +  D + +  NL++L L  N+IS         L  L  L L  N + 
Sbjct: 141 -LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 93.5 bits (233), Expect = 2e-21
 Identities = 51/235 (21%), Positives = 86/235 (36%), Gaps = 35/235 (14%)

Query: 44  SELQYLSVYNNSL----NGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL 99
              + L +  N L    + +F     +  +++ LDL    ++T +   + ++  L+ L L
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSF----FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 100 CYNELTLEFPSFILT-CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLS 158
             N +         +   +L  L      L+ L       +L  L+ LN+  N  Q    
Sbjct: 84  TGNPIQ-SLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 159 PNV-SKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQ- 216
           P   S L+NL  L L++N                ++  ++           L Q+  L  
Sbjct: 142 PEYFSNLTNLEHLDLSSN----------------KIQSIYCTDLRV-----LHQMPLLNL 180

Query: 217 HLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDN 271
            LDL +N +N  I P       L  LAL  NQL          L+ L ++ L  N
Sbjct: 181 SLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 92.7 bits (231), Expect = 3e-21
 Identities = 50/223 (22%), Positives = 83/223 (37%), Gaps = 21/223 (9%)

Query: 12  IPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSL----NGAFPFQLSNL 67
           IP  +    +   LDL+ N              ELQ L +    +    +GA+     +L
Sbjct: 22  IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY----QSL 75

Query: 68  RKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELT-LEFPSF-ILTCRNLTYLDLSL 125
             +  L L GN +++     FS + SL  L      L  LE      L    L  L+++ 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK--TLKELNVAH 133

Query: 126 NKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTV----LRLATNKFSGP 180
           N +        F+NL  LE+L+L+ N+ Q  +       L  + +    L L+ N  +  
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNF- 191

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 223
           I         ++ + L  N           +L +LQ + L  N
Sbjct: 192 IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 45/223 (20%), Positives = 84/223 (37%), Gaps = 16/223 (7%)

Query: 227 STIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWT 286
             IP    L  +   L L+ N L      S  +   L  L LS   +   I      + +
Sbjct: 20  YKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLS 76

Query: 287 ELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNHFSGPIPSEI-GKLTSLEKLDLSGN 344
            L +L +  N  + ++       L+ LQ L     + +  + +   G L +L++L+++ N
Sbjct: 77  HLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHN 134

Query: 345 QLSGTIPP-TLWNLTNLLSLQLFFNNLSGTIPPEI-GSMASLVAF----DVNTNQLHGEL 398
            +     P    NLTNL  L L  N +  +I       +  +       D++ N ++  +
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FI 192

Query: 399 PENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNN 441
                + + L + ++ TN    S+P        SL  +    N
Sbjct: 193 QPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 41/217 (18%), Positives = 65/217 (29%), Gaps = 17/217 (7%)

Query: 307 GLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPP-TLWNLTNLLSLQL 365
            L    + L L  N               L+ LDLS  ++  TI      +L++L +L L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL 83

Query: 366 FFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-SRLVNLNKFSVFTNNFSGSIP 423
             N +  ++       ++SL         L   L       L  L + +V  N    S  
Sbjct: 84  TGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFK 140

Query: 424 GDFGKFS--PSLINVSFSNNSFSGELPYELCSG-----FALEELTVNGNNFTGSLPACMR 476
                FS   +L ++  S+N     +                 L ++ N     +     
Sbjct: 141 LP-EYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF 197

Query: 477 NCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGN 513
               L  +  D NQ        F     L  I L  N
Sbjct: 198 KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 31/155 (20%), Positives = 52/155 (33%), Gaps = 47/155 (30%)

Query: 1   LDLSHNNI-SGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGA 59
           L+++HN I S  +P     L+NL  LDL++N              ++Q +          
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN--------------KIQSIY------CTD 168

Query: 60  FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119
                  L ++  L+L                     L L  N +             L 
Sbjct: 169 L----RVLHQMPLLNL--------------------SLDLSLNPMN-FIQPGAFKEIRLK 203

Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQ 154
            L L  N+L   +P+ +F  L  L+ + L  N + 
Sbjct: 204 ELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 237

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 91.7 bits (228), Expect = 1e-20
 Identities = 52/201 (25%), Positives = 79/201 (39%), Gaps = 12/201 (5%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           ++    N++  +PP +    + T L L+ NL      + +   + L  L++    L    
Sbjct: 15  VNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILT-CRNLT 119
                 L  +  LDL  N L++        +P+LT L + +N LT   P   L     L 
Sbjct: 72  VD--GTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQ 127

Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFS 178
            L L  N+L  L P  L T   KLE L+L +N    +L   + + L NL  L L  N   
Sbjct: 128 ELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

Query: 179 GPIPGDIGLMSNIQLVELFNN 199
             IP        +    L  N
Sbjct: 186 T-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 82.1 bits (203), Expect = 2e-17
 Identities = 54/204 (26%), Positives = 65/204 (31%), Gaps = 35/204 (17%)

Query: 71  RYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSG 130
             L L  N L T   +       LT L+L   ELT       L    L  LDLS N+L  
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP--VLGTLDLSHNQLQS 91

Query: 131 LIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLMS 189
           L    L   L  L  L+++ N+    L       L  L  L L  N              
Sbjct: 92  L--PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN-------------- 134

Query: 190 NIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPEL--GLCTNLSFLALAMN 247
             +L  L     T            L+ L L  N L   +P  L  GL  NL  L L  N
Sbjct: 135 --ELKTLPPGLLTP--------TPKLEKLSLANNNLTE-LPAGLLNGL-ENLDTLLLQEN 182

Query: 248 QLSGGLPLSLSNLSRLNELGLSDN 271
            L   +P        L    L  N
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 77.1 bits (190), Expect = 9e-16
 Identities = 59/229 (25%), Positives = 89/229 (38%), Gaps = 54/229 (23%)

Query: 92  PSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDN 151
              T L L  N L     + ++    LT L+L   +L+ L   ++   L  L  L+L+ N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL---QVDGTLPVLGTLDLSHN 87

Query: 152 QFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQ 211
           Q Q  L      L  LTVL ++ N                +L  L   +  G        
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFN----------------RLTSLPLGALRG-------- 122

Query: 212 LKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDN 271
           L  LQ L L+ N L  T+PP L                       L+   +L +L L++N
Sbjct: 123 LGELQELYLKGNEL-KTLPPGL-----------------------LTPTPKLEKLSLANN 158

Query: 272 FLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRN 320
            L+ E+ A L+     L++L +Q NS +  IP        L + FL+ N
Sbjct: 159 NLT-ELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.0 bits (182), Expect = 8e-15
 Identities = 57/231 (24%), Positives = 83/231 (35%), Gaps = 39/231 (16%)

Query: 214 NLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFL 273
           +   ++     L + +PP   L  + + L L+ N L      +L   +RL +L L     
Sbjct: 11  SHLEVNCDKRNLTA-LPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-- 65

Query: 274 SGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKL 333
                        EL  L               G L  L  L L  N     +P     L
Sbjct: 66  -------------ELTKL------------QVDGTLPVLGTLDLSHNQLQS-LPLLGQTL 99

Query: 334 TSLEKLDLSGNQLSGTIPP-TLWNLTNLLSLQLFFNNLSGTIPPEI-GSMASLVAFDVNT 391
            +L  LD+S N+L+ ++P   L  L  L  L L  N L  T+PP +      L    +  
Sbjct: 100 PALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157

Query: 392 NQLHGELPENI-SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNN 441
           N L  ELP  + + L NL+   +  N+      G FG  S  L       N
Sbjct: 158 NNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG--SHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 46/233 (19%), Positives = 73/233 (31%), Gaps = 40/233 (17%)

Query: 333 LTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTN 392
           + S  +++     L+  +PP L    +   L L  N L       +     L   +++  
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 393 QLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELC 452
           +L  +L  +   L  L    +  N    S+P                             
Sbjct: 66  EL-TKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLP---------------------- 100

Query: 453 SGFALEELTVNGNNFTGSLPACM-RNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLS 511
              AL  L V+ N  T SLP    R    L  +   GN+            P+L+ + L+
Sbjct: 101 ---ALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156

Query: 512 GNHFIGEISPDWGECRNLSNLQ---LDRNKISGGIPAELGNLTRLGVLSLDSN 561
            N+ + E+    G    L NL    L  N +   IP        L    L  N
Sbjct: 157 NNN-LTELPA--GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 93.2 bits (231), Expect = 3e-20
 Identities = 63/353 (17%), Positives = 112/353 (31%), Gaps = 43/353 (12%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
                  I   I P     +     +L       ++     +L+ +  +   N+ +    
Sbjct: 4   TITVSTPIKQ-IFP-DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQ 59

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
              +  L  V  L L GN L   D    +N+ +L  L L  N++     S +   + L  
Sbjct: 60  G--IQYLPNVTKLFLNGNKLT--DIKPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLKS 113

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           L L  N +S +       +L +LE L L +N+    ++  +S+L+ L  L L  N+ S  
Sbjct: 114 LSLEHNGISDING---LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-- 166

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
              DI                       L  L  LQ+L L  N ++      L    NL 
Sbjct: 167 ---DI---------------------VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLD 200

Query: 241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 300
            L L   +         SNL   N +  +D  L      +  G++ +             
Sbjct: 201 VLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNE 260

Query: 301 NIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPT 353
                   +T  +    +    + P+         ++   +     +GT    
Sbjct: 261 VSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITA 313

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.9 bits (230), Expect = 5e-20
 Identities = 61/322 (18%), Positives = 114/322 (35%), Gaps = 45/322 (13%)

Query: 115 CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLAT 174
                  +L    ++  +       L  ++ +   ++  +  +   +  L N+T L L  
Sbjct: 20  FAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNG 74

Query: 175 NKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELG 234
           NK +     DI                       L  LKNL  L L  N +   +   L 
Sbjct: 75  NKLT-----DI---------------------KPLTNLKNLGWLFLDENKI-KDLSS-LK 106

Query: 235 LCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQ 294
               L  L+L  N +S    L   +L +L  L L +N ++ +I+   +   T+L++L ++
Sbjct: 107 DLKKLKSLSLEHNGISDINGLV--HLPQLESLYLGNNKIT-DITV--LSRLTKLDTLSLE 161

Query: 295 NNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTL 354
           +N  + +I P +  LTKLQ L+L +NH S      +  L +L+ L+L   +         
Sbjct: 162 DNQ-ISDIVP-LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQ 217

Query: 355 WNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVF 414
            NL    +++    +L    P  I         +V  +        +      +      
Sbjct: 218 SNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVT-IGKA 274

Query: 415 TNNFSGSIPGDFGKFSPSLINV 436
              F G +     +      +V
Sbjct: 275 KARFHGRVTQPLKEVYTVSYDV 296

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.0 bits (168), Expect = 2e-12
 Identities = 48/284 (16%), Positives = 92/284 (32%), Gaps = 18/284 (6%)

Query: 257 LSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLF 316
               +   +  L    ++  ++         ++ +   N+    ++   I  L  +  LF
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLF 71

Query: 317 LYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPP 376
           L  N  +  I   +  L +L  L L  N++   +   L +L  L SL L  N +S  I  
Sbjct: 72  LNGNKLTD-I-KPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS-DING 126

Query: 377 EIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINV 436
            +  +  L +  +  N++       +SRL  L+  S+  N  S  I          L N+
Sbjct: 127 -LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIVP-LAGL-TKLQNL 180

Query: 437 SFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNIT 496
             S N  S +L   L     L+ L +              N    N V+           
Sbjct: 181 YLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

Query: 497 RAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS 540
            +         ++     F  E+S  + +   +   +   +   
Sbjct: 239 ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRV 282

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.0 bits (137), Expect = 9e-09
 Identities = 44/255 (17%), Positives = 89/255 (34%), Gaps = 41/255 (16%)

Query: 309 LTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFN 368
             +     L +   +  +     +L S++++  + + +  ++   +  L N+  L L  N
Sbjct: 20  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGN 75

Query: 369 NLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGK 428
            L+  I P + ++ +L    ++ N++  +L  ++  L  L   S+  N  S  I G    
Sbjct: 76  KLT-DIKP-LTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS-DING---- 126

Query: 429 FSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDG 488
                                 L     LE L +  N  T      +   + L+ +  + 
Sbjct: 127 ----------------------LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLED 162

Query: 489 NQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELG 548
           NQ + +I        +L  + LS NH I ++       +NL  L+L   +          
Sbjct: 163 NQIS-DIV-PLAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQECLNKPINHQS 218

Query: 549 NLTRLGVLSLDSNEL 563
           NL     +      L
Sbjct: 219 NLVVPNTVKNTDGSL 233

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 88.2 bits (219), Expect = 2e-19
 Identities = 70/321 (21%), Positives = 124/321 (38%), Gaps = 48/321 (14%)

Query: 53  NNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFI 112
             ++N  FP     L     +  G + +   D    +++  +T LS     +T      +
Sbjct: 6   PTAINVIFP--DPALANAIKIAAGKSNVT--DTVTQADLDGITTLSAFGTGVT--TIEGV 59

Query: 113 LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRL 172
               NL  L+L  N+++ L P     NL K+  L L+ N  +  +S  ++ L ++  L L
Sbjct: 60  QYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDL 114

Query: 173 ATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPE 232
            + + +   P                          L  L NLQ L L +N + +  P  
Sbjct: 115 TSTQITDVTP--------------------------LAGLSNLQVLYLDLNQITNISP-- 146

Query: 233 LGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQ 292
           L   TNL +L++   Q+S   P  L+NLS+L  L   DN +S +IS   + +   L  + 
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-DISP--LASLPNLIEVH 201

Query: 293 IQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPP 352
           ++NN  + ++ P +   + L  + L     +         L       + G   +   P 
Sbjct: 202 LKNNQ-ISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAPIAPA 257

Query: 353 TLWNLTNLLSLQLFFNNLSGT 373
           T+ +     S  L +N  S  
Sbjct: 258 TISDNGTYASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 85.9 bits (213), Expect = 1e-18
 Identities = 67/297 (22%), Positives = 114/297 (38%), Gaps = 46/297 (15%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           +    +N++  +      L  +T L         +I   +  L+ L  L + +N +    
Sbjct: 24  IAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQITDLA 79

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           P  L NL K+  L+L GN L+    S  + + S+  L L   ++T    + +    NL  
Sbjct: 80  P--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQIT--DVTPLAGLSNLQV 133

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           L L LN+++ + P      L  L+YL++ + Q    L+P ++ LS LT L+   NK S  
Sbjct: 134 LYLDLNQITNISP---LAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKIS-- 186

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
              DI                     S L  L NL  + L+ N ++   P  L   +NL 
Sbjct: 187 ---DI---------------------SPLASLPNLIEVHLKNNQISDVSP--LANTSNLF 220

Query: 241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNS 297
            + L    ++       +NL   N +          I+   I +     S  +  N 
Sbjct: 221 IVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP---IAPATISDNGTYASPNLTWNL 274

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 60/261 (22%), Positives = 106/261 (40%), Gaps = 24/261 (9%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L      ++      +  L+NL  L+L +N    +  + + +L+++  L +  N L    
Sbjct: 46  LSAFGTGVTTI--EGVQYLNNLIGLELKDNQI--TDLAPLKNLTKITELELSGNPLKNVS 101

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
              ++ L+ ++ LDL    +   D +  + + +L  L L  N++T    S +    NL Y
Sbjct: 102 A--IAGLQSIKTLDLTSTQIT--DVTPLAGLSNLQVLYLDLNQIT--NISPLAGLTNLQY 155

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           L +   ++S L P     NL KL  L   DN+        ++ L NL  + L  N+ S  
Sbjct: 156 LSIGNAQVSDLTP---LANLSKLTTLKADDNKI--SDISPLASLPNLIEVHLKNNQISDV 210

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
            P  +   SN+ +V L N + T Q         NL   ++      + I P     T   
Sbjct: 211 SP--LANTSNLFIVTLTNQTITNQPVFY---NNNLVVPNVVKGPSGAPIAPA----TISD 261

Query: 241 FLALAMNQLSGGLPLSLSNLS 261
               A   L+  L   ++N+S
Sbjct: 262 NGTYASPNLTWNLTSFINNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 45/256 (17%), Positives = 95/256 (37%), Gaps = 19/256 (7%)

Query: 309 LTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFN 368
           L     +   +++ +  +      L  +  L   G  ++ TI   +  L NL+ L+L  N
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDN 73

Query: 369 NLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGK 428
            ++  + P + ++  +   +++ N L  +    I+ L ++    + +   +   P     
Sbjct: 74  QIT-DLAP-LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAG 127

Query: 429 FSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDG 488
              +L  +    N  +   P    +   L+ L++     +   P  + N S L  ++ D 
Sbjct: 128 L-SNLQVLYLDLNQITNISPLAGLT--NLQYLSIGNAQVSDLTP--LANLSKLTTLKADD 182

Query: 489 NQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELG 548
           N+ + +I+      P L  + L  N  I ++SP      NL  + L    I+        
Sbjct: 183 NKIS-DIS-PLASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTNQTITNQPVFYNN 238

Query: 549 NLTRLGVLSLDSNELT 564
           NL    V+   S    
Sbjct: 239 NLVVPNVVKGPSGAPI 254

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 87.0 bits (216), Expect = 3e-19
 Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 7/191 (3%)

Query: 35  SIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSL 94
           +IPS     ++ + L + +N L+         L K+R L L  N L+T     F  + +L
Sbjct: 30  AIPS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87

Query: 95  THLSLCYNELTLEFPSFILTC-RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQF 153
             L +  N+L    P  +     NL  L L  N+L  L P R+F +L KL YL+L  N+ 
Sbjct: 88  ETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNEL 145

Query: 154 QGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQL 212
           Q  L   V  KL++L  LRL  N+      G    ++ ++ ++L NN        +   L
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204

Query: 213 KNLQHLDLRMN 223
           + L+ L L+ N
Sbjct: 205 EKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 85.8 bits (213), Expect = 7e-19
 Identities = 60/205 (29%), Positives = 79/205 (38%), Gaps = 33/205 (16%)

Query: 71  RYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTC-RNLTYLDLSLNKLS 129
           + LDL  N L +     F  +  L  L L  N+L    P+ I    +NL  L ++ NKL 
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98

Query: 130 GLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLM 188
            L P  +F  L  L  L L  NQ +  L P V   L+ LT L L  N             
Sbjct: 99  AL-PIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYN------------- 143

Query: 189 SNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPEL--GLCTNLSFLALAM 246
              +L  L    F          L +L+ L L  N L   +P      L T L  L L  
Sbjct: 144 ---ELQSLPKGVFDK--------LTSLKELRLYNNQLKR-VPEGAFDKL-TELKTLKLDN 190

Query: 247 NQLSGGLPLSLSNLSRLNELGLSDN 271
           NQL      +  +L +L  L L +N
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 85.4 bits (212), Expect = 9e-19
 Identities = 58/183 (31%), Positives = 85/183 (46%), Gaps = 17/183 (9%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEM-GDLSELQYLSVYNNSL--- 56
           LDL  N +S     A   L+ L  L LN+N  + ++P+ +  +L  L+ L V +N L   
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 57  -NGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFI--- 112
             G F      L  +  L L  N L++     F ++  LT+LSL YNEL    P  +   
Sbjct: 101 PIGVF----DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDK 155

Query: 113 LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRL 172
           LT  +L  L L  N+L   +PE  F  L +L+ L L +NQ +         L  L +L+L
Sbjct: 156 LT--SLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

Query: 173 ATN 175
             N
Sbjct: 213 QEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 227 STIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWT 286
           + IP    +  +   L L  N+LS     +   L++L  L L+DN L   + A +     
Sbjct: 29  TAIPS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELK 85

Query: 287 ELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNHFSGPIPSEI-GKLTSLEKLDLSGN 344
            LE+L + +N     +P  +   L  L  L L RN     +P  +   LT L  L L  N
Sbjct: 86  NLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYN 143

Query: 345 QLSGTIPPTLW-NLTNLLSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI 402
           +L  ++P  ++  LT+L  L+L+ N L   +P      +  L    ++ NQL        
Sbjct: 144 ELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201

Query: 403 SRLVNLNKFSVFTN 416
             L  L    +  N
Sbjct: 202 DSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 53/189 (28%), Positives = 81/189 (42%), Gaps = 13/189 (6%)

Query: 186 GLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPEL--GLCTNLSFLA 243
            + ++ + ++L +N  +     +  +L  L+ L L  N L  T+P  +   L  NL  L 
Sbjct: 34  NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKEL-KNLETLW 91

Query: 244 LAMNQLSGGLPLSL-SNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNI 302
           +  N+L   LP+ +   L  L EL L  N L   +   +  + T+L  L +  N    ++
Sbjct: 92  VTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL-QSL 148

Query: 303 PPEIGL---LTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTN 359
           P   G+   LT L+ L LY N           KLT L+ L L  NQL         +L  
Sbjct: 149 PK--GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206

Query: 360 LLSLQLFFN 368
           L  LQL  N
Sbjct: 207 LKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 48/211 (22%), Positives = 77/211 (36%), Gaps = 33/211 (15%)

Query: 307 GLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWN-LTNLLSLQL 365
            +    + L L  N  S        +LT L  L L+ N+L  T+P  ++  L NL +L +
Sbjct: 34  NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92

Query: 366 FFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-SRLVNLNKFSVFTNNFSGSIP 423
             N L   +P  +   + +L    ++ NQL   LP  +   L  L   S+  N    S+P
Sbjct: 93  TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLP 149

Query: 424 GDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACM-RNCSNLN 482
                              F   L        +L+EL +  N     +P       + L 
Sbjct: 150 ----------------KGVFDK-LT-------SLKELRLYNNQLK-RVPEGAFDKLTELK 184

Query: 483 RVRFDGNQFTGNITRAFGVHPRLDFIRLSGN 513
            ++ D NQ       AF    +L  ++L  N
Sbjct: 185 TLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 58/240 (24%), Positives = 84/240 (35%), Gaps = 59/240 (24%)

Query: 326 IPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEI-GSMASL 384
           IPS I      +KLDL  N+LS         LT L  L L  N L  T+P  I   + +L
Sbjct: 31  IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNL 87

Query: 385 VAFDVNTNQLHGELPENI-SRLVNLNKFSVFTNNFSGSIP-GDFGKFSPSLINVSFSNNS 442
               V  N+L   LP  +  +LVNL +  +  N    S+P   F   +            
Sbjct: 88  ETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLT------------ 133

Query: 443 FSGELPYELCSGFALEELTVNGNNFTGSLPACM-RNCSNLNRVRFDGNQFTGNITRAFGV 501
                         L  L++  N    SLP  +    ++L  +R   NQ           
Sbjct: 134 -------------KLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK--------R 171

Query: 502 HPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSN 561
            P   F +L+                 L  L+LD N++         +L +L +L L  N
Sbjct: 172 VPEGAFDKLT----------------ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 86.9 bits (216), Expect = 2e-18
 Identities = 74/416 (17%), Positives = 131/416 (31%), Gaps = 77/416 (18%)

Query: 1   LDLSHNNIS----GPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSE--------LQY 48
           + L    ++      I  A+     L  L+L +N         +  + +        +Q 
Sbjct: 33  VRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG---DVGVHCVLQGLQTPSCKIQK 89

Query: 49  LSVYNNSLN----GAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNM-----PSLTHLSL 99
           LS+ N  L     G     L  L  ++ L L  N L                  L  L L
Sbjct: 90  LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL 149

Query: 100 CYNELTLE----FPSFILTCRNLTYLDLSLNKLSG----LIPERLFTNLGKLEYLNLTDN 151
            Y  L+        S +    +   L +S N ++     ++ + L  +  +LE L L   
Sbjct: 150 EYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209

Query: 152 QFQGK----LSPNVSKLSNLTVLRLATNKFSGPIPGDIGLM----------SNIQLVELF 197
                    L   V+  ++L  L L +NK      GD+G+           S ++ + ++
Sbjct: 210 GVTSDNCRDLCGIVASKASLRELALGSNKL-----GDVGMAELCPGLLHPSSRLRTLWIW 264

Query: 198 NNSFTGQ----IPSSLGQLKNLQHLDLRMNALNSTIPPELGL-----CTNLSFLALAMNQ 248
               T +    +   L   ++L+ L L  N L       L          L  L +    
Sbjct: 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324

Query: 249 LS--GGLPLS--LSNLSRLNELGLSDNFLSGE----ISANLIGNWTELESLQIQNNSF-- 298
            +       S  L+    L EL +S+N L       +   L    + L  L + +     
Sbjct: 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384

Query: 299 --MGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKL-----TSLEKLDLSGNQLS 347
               ++   +     L+ L L  N        ++ +        LE+L L     S
Sbjct: 385 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 83.9 bits (208), Expect = 2e-17
 Identities = 74/406 (18%), Positives = 125/406 (30%), Gaps = 79/406 (19%)

Query: 20  SNLTFLDL-NNNLFEGSIPSEMGDLSELQYLSVYNNSLN----GAFPFQLSNLRKVRYLD 74
            ++  LD+    L +      +  L + Q + + +  L           L     +  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 75  LGGNFLETPDWSKFSNM-----PSLTHLSLCYNELTLE----FPSFILTCRNLTYLDLSL 125
           L  N L                  +  LSL    LT        S + T   L  L LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 126 NKLSG----LIPERLFTNLGKLEYLNLTDNQFQGK----LSPNVSKLSNLTVLRLATNKF 177
           N L      L+ E L     +LE L L            L+  +    +   L ++ N  
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 178 SGPIPGDIGLMS----------NIQLVELFNNSFTGQ----IPSSLGQLKNLQHLDLRMN 223
                 + G+             ++ ++L +   T      +   +    +L+ L L  N
Sbjct: 183 -----NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

Query: 224 ALNST-----IPPELGLCTNLSFLALAMNQLS----GGLPLSLSNLSRLNELGLSDNFLS 274
            L         P  L   + L  L +    ++    G L   L     L EL L+ N L 
Sbjct: 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

Query: 275 GEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSG----PIPSEI 330
            E  A L+      E+L                   +L+ L++    F+        S +
Sbjct: 298 DE-GARLLC-----ETLLEPG--------------CQLESLWVKSCSFTAACCSHFSSVL 337

Query: 331 GKLTSLEKLDLSGNQLSGTIPPTLW-----NLTNLLSLQLFFNNLS 371
            +   L +L +S N+L       L        + L  L L   ++S
Sbjct: 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.2 bits (157), Expect = 4e-11
 Identities = 54/325 (16%), Positives = 109/325 (33%), Gaps = 68/325 (20%)

Query: 1   LDLSHNNIS----GPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDL-----SELQYLSV 51
           L L + ++S     P+   +    +   L ++NN    +    +         +L+ L +
Sbjct: 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206

Query: 52  YNNSLN----GAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNM-----PSLTHLSLCYN 102
            +  +           +++   +R L LG N L     ++           L  L +   
Sbjct: 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266

Query: 103 ELTLE----FPSFILTCRNLTYLDLSLNKLSG----LIPERLFTNLGKLEYLNLTDNQFQ 154
            +T +        +    +L  L L+ N+L      L+ E L     +LE L +    F 
Sbjct: 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326

Query: 155 GK----LSPNVSKLSNLTVLRLATNKFSGPIPGDIGLM----------SNIQLVELFNNS 200
                  S  +++   L  L+++ N+       D G+           S ++++ L +  
Sbjct: 327 AACCSHFSSVLAQNRFLLELQISNNRL-----EDAGVRELCQGLGQPGSVLRVLWLADCD 381

Query: 201 FTGQ----IPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLS 256
            +      + ++L    +L+ LDL  N L                    + QL   +   
Sbjct: 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDA----------------GILQLVESVR-- 423

Query: 257 LSNLSRLNELGLSDNFLSGEISANL 281
                 L +L L D + S E+   L
Sbjct: 424 -QPGCLLEQLVLYDIYWSEEMEDRL 447

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 72/401 (17%), Positives = 123/401 (30%), Gaps = 69/401 (17%)

Query: 213 KNLQHLDLRMNALNSTIPPELG-LCTNLSFLALAMNQLS----GGLPLSLSNLSRLNELG 267
            ++Q LD++   L+     EL  L      + L    L+      +  +L     L EL 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 268 LSDNFLSGE----ISANLIGNWTELESLQIQNNSF----MGNIPPEIGLLTKLQYLFLYR 319
           L  N L       +   L     +++ L +QN        G +   +  L  LQ L L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 320 NHFSGPIPSEIGKL-----TSLEKLDLSGNQLSGT----IPPTLWNLTNLLSLQLFFNNL 370
           N         + +        LEKL L    LS      +   L    +   L +  N++
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 371 SGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFG--- 427
           +                +     L   L ++  +L  L    + +   +     D     
Sbjct: 183 N----------------EAGVRVLCQGLKDSPCQLEALK---LESCGVTSDNCRDLCGIV 223

Query: 428 KFSPSLINVSFSNNSFSGELPYELCSGF-----ALEELTVNGNNFT----GSLPACMRNC 478
               SL  ++  +N        ELC G       L  L +     T    G L   +R  
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283

Query: 479 SNLNRVRFDGNQFTGNITRAFG-----VHPRLDFIRLSGNHFIGE-----ISPDWGECRN 528
            +L  +   GN+      R           +L+ + +              S    + R 
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRF 342

Query: 529 LSNLQLDRNKISGGIPAELG-----NLTRLGVLSLDSNELT 564
           L  LQ+  N++      EL        + L VL L   +++
Sbjct: 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 79.6 bits (197), Expect = 2e-17
 Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 8/161 (4%)

Query: 19  LSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGN 78
           +++LT++ L N      + + +     ++ L++ N       P  +S L  +  L + G 
Sbjct: 43  MNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK 98

Query: 79  FLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFT 138
            + +      S + SLT L + ++       + I T   +  +DLS N     I      
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LK 156

Query: 139 NLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSG 179
            L +L+ LN+  +         +     L  L   +    G
Sbjct: 157 TLPELKSLNIQFDGVH-DYRG-IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 79.6 bits (197), Expect = 2e-17
 Identities = 29/160 (18%), Positives = 68/160 (42%), Gaps = 8/160 (5%)

Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNK 176
           +LTY+ L+   ++ L           ++ L + +       +P +S LSNL  LR+    
Sbjct: 45  SLTYITLANINVTDLTG---IEYAHNIKDLTINNIHAT-NYNP-ISGLSNLERLRIMGKD 99

Query: 177 FSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLC 236
            +     ++  ++++ L+++ +++    I + +  L  +  +DL  N   + I P L   
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTL 158

Query: 237 TNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGE 276
             L  L +  + +       + +  +LN+L      + G+
Sbjct: 159 PELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.1 bits (193), Expect = 7e-17
 Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 8/152 (5%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           + L++ N++      I    N+  L +NN        + +  LS L+ L +    +    
Sbjct: 49  ITLANINVTDLTG--IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDK 104

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
              LS L  +  LD+  +  +    +K + +P +  + L YN   +     + T   L  
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA-ITDIMPLKTLPELKS 163

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQ 152
           L++  + +          +  KL  L      
Sbjct: 164 LNIQFDGVHDYRG---IEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.4 bits (186), Expect = 6e-16
 Identities = 34/184 (18%), Positives = 73/184 (39%), Gaps = 8/184 (4%)

Query: 237 TNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNN 296
           +        +   S    ++ + ++ L  + L++  ++ +++   I     ++ L I N 
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLTG--IEYAHNIKDLTINNI 76

Query: 297 SFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWN 356
               N  P I  L+ L+ L +     +      +  LTSL  LD+S +    +I   +  
Sbjct: 77  HA-TNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 357 LTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTN 416
           L  + S+ L +N     I P + ++  L + ++  + +H      I     LN+   F+ 
Sbjct: 135 LPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQ 191

Query: 417 NFSG 420
              G
Sbjct: 192 TIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.4 bits (173), Expect = 3e-14
 Identities = 38/187 (20%), Positives = 75/187 (40%), Gaps = 11/187 (5%)

Query: 138 TNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELF 197
           +         L  +      +   +++++LT + LA    +  + G I    NI+ + + 
Sbjct: 20  STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTD-LTG-IEYAHNIKDLTIN 74

Query: 198 NNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSL 257
           N   T    + +  L NL+ L +    + S   P L   T+L+ L ++ +     +   +
Sbjct: 75  NIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 258 SNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFL 317
           + L ++N + LS N    +I    +    EL+SL IQ +    +    I    KL  L+ 
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGV-HDYRG-IEDFPKLNQLYA 188

Query: 318 YRNHFSG 324
           +     G
Sbjct: 189 FSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.2 bits (170), Expect = 8e-14
 Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 5/131 (3%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L +++ + +   P  I  LSNL  L +            +  L+ L  L + +++ + + 
Sbjct: 71  LTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
             +++ L KV  +DL  N   T D      +P L  L++ ++ +       I     L  
Sbjct: 129 LTKINTLPKVNSIDLSYNGAIT-DIMPLKTLPELKSLNIQFDGVH--DYRGIEDFPKLNQ 185

Query: 121 LDLSLNKLSGL 131
           L      + G 
Sbjct: 186 LYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 25/184 (13%), Positives = 60/184 (32%), Gaps = 8/184 (4%)

Query: 286 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQ 345
           +  ++                  +  L Y+ L   + +    + I    +++ L ++   
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIH 77

Query: 346 LSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRL 405
            +   P  +  L+NL  L++   +++    P +  + SL   D++ +     +   I+ L
Sbjct: 78  ATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 406 VNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGN 465
             +N   +  N     I        P L +++   +        E      L +L     
Sbjct: 136 PKVNSIDLSYNGAITDIMP-LKTL-PELKSLNIQFDGVHDYRGIEDFP--KLNQLYAFSQ 191

Query: 466 NFTG 469
              G
Sbjct: 192 TIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 3/109 (2%)

Query: 457 LEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFI 516
           LE L + G + T      +   ++L  +    +    +I       P+++ I LS N  I
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 517 GEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565
            +I P       L +L +  + +       + +  +L  L   S  + G
Sbjct: 150 TDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 82.2 bits (203), Expect = 3e-17
 Identities = 54/281 (19%), Positives = 87/281 (30%), Gaps = 46/281 (16%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSL---- 56
                + ++  IP  +    N   L                   +L+ + +  N +    
Sbjct: 14  FLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 57  -NGAFPFQLSNLRKVRYLDL-GGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFI-L 113
               F    SNL K+  + +   N L   +   F N+P+L +L +    +    P    +
Sbjct: 71  EADVF----SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKI 125

Query: 114 TCRNLTYLDLSLNKLSGLIPERLFTNL-GKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRL 172
                  LD+  N     I    F  L  +   L L  N  Q ++  +    + L  L  
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELN- 183

Query: 173 ATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPE 232
                         L  N  L EL N+ F G              LD+    +  ++P  
Sbjct: 184 --------------LSDNNNLEELPNDVFHG--------ASGPVILDISRTRI-HSLPS- 219

Query: 233 LGLCTNLSFL-ALAMNQLSGGLPLSLSNLSRLNELGLSDNF 272
                NL  L A +   L   LP +L  L  L E  L+   
Sbjct: 220 -YGLENLKKLRARSTYNLK-KLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 80.3 bits (198), Expect = 1e-16
 Identities = 49/258 (18%), Positives = 86/258 (33%), Gaps = 36/258 (13%)

Query: 92  PSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTD- 150
            +   L     +L +          +L  +++S N +  +I   +F+NL KL  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 151 NQFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSL 209
           N     ++P     L NL  L ++                   +  L +           
Sbjct: 90  NNLL-YINPEAFQNLPNLQYLLISNT----------------GIKHLPDVHKIH------ 126

Query: 210 GQLKNLQHLDLRMNALNSTIPPEL--GLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELG 267
                   LD++ N    TI      GL      L L  N +   +  S  N ++L+EL 
Sbjct: 127 --SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELN 183

Query: 268 LSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNHFSGPI 326
           LSDN    E+  ++    +    L I       ++P      L KL+    Y        
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPT- 241

Query: 327 PSEIGKLTSLEKLDLSGN 344
              + KL +L +  L+  
Sbjct: 242 ---LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 77.2 bits (190), Expect = 2e-15
 Identities = 35/234 (14%), Positives = 70/234 (29%), Gaps = 14/234 (5%)

Query: 70  VRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILT-CRNLTYLDLS-LNK 127
              L      L       FS    L  + +  N++     + + +    L  + +   N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 128 LSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDI-- 185
           L   I    F NL  L+YL +++   +     +        +L +  N     I  +   
Sbjct: 92  LL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 186 GLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPEL--GLCTNLSFLA 243
           GL     ++ L  N       S+    +  +      N L   +P ++  G  +    L 
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNL-EELPNDVFHGA-SGPVILD 208

Query: 244 LAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNS 297
           ++  ++       L NL +L      +           +     L    +   S
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRARSTYNL-----KKLPTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.9 bits (184), Expect = 1e-14
 Identities = 37/215 (17%), Positives = 75/215 (34%), Gaps = 11/215 (5%)

Query: 186 GLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPEL--GLCTNLSFLA 243
            L  N   +             +     +L+ +++  N +   I  ++   L   L  + 
Sbjct: 27  DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL-PKLHEIR 85

Query: 244 LA-MNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNI 302
           +   N L    P +  NL  L  L +S+  +   +      +  +   L IQ+N  +  I
Sbjct: 86  IEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 303 PPEI--GLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPP-TLWNLTN 359
                 GL  +   L+L +N     I +     T L++L+LS N     +P       + 
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG 203

Query: 360 LLSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQ 393
            + L +    +  ++P     ++  L A      +
Sbjct: 204 PVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 38/241 (15%), Positives = 73/241 (30%), Gaps = 31/241 (12%)

Query: 326 IPSEIGKLTSLEKLDLSGNQLSGTIPP-TLWNLTNLLSLQLFFNNLSGTIPPEIGSMASL 384
           IPS++    +  +L     +L   I         +L  +++  N++   I  +       
Sbjct: 24  IPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEAD------- 73

Query: 385 VAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFS 444
             F                 L  L++  +   N    I  +  +  P+L  +  SN    
Sbjct: 74  -VFS---------------NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117

Query: 445 GELPYELCSGFALEELTVNGNNFTGSLPACM--RNCSNLNRVRFDGNQFTGNITRAFGVH 502
                          L +  N    ++              +  + N        AF   
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-G 176

Query: 503 PRLDFIRLSGNHFIGEISPD-WGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSN 561
            +LD + LS N+ + E+  D +        L + R +I       L NL +L   S  + 
Sbjct: 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

Query: 562 E 562
           +
Sbjct: 237 K 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 80.9 bits (200), Expect = 4e-17
 Identities = 57/278 (20%), Positives = 101/278 (36%), Gaps = 44/278 (15%)

Query: 19  LSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGN 78
            +     +L       ++     +L+ +  +   N+ +       +  L  V  L L GN
Sbjct: 23  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78

Query: 79  FLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFT 138
            L   D    +N+ +L  L L  N++     S +   + L  L L  N +S +       
Sbjct: 79  KLT--DIKPLANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNGISDING---LV 131

Query: 139 NLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFN 198
           +L +LE L L +N+    ++  +S+L+ L  L L  N+ S     DI             
Sbjct: 132 HLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-----DI------------- 171

Query: 199 NSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLS 258
                     L  L  LQ+L L  N ++      L    NL  L L   +         S
Sbjct: 172 --------VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQS 221

Query: 259 NLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNN 296
           NL   N +  +D  L   ++  +I +  + E   ++ +
Sbjct: 222 NLVVPNTVKNTDGSL---VTPEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.4 bits (191), Expect = 8e-16
 Identities = 49/227 (21%), Positives = 100/227 (44%), Gaps = 17/227 (7%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
            +L   +++  +      L+++  +  NN+  + S+   +  L  +  L +  N L    
Sbjct: 29  DNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLTDIK 84

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           P  L+NL+ + +L L  N ++  D S   ++  L  LSL +N ++    + ++    L  
Sbjct: 85  P--LANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNGISD--INGLVHLPQLES 138

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           L L  NK++ +      + L KL+ L+L DNQ    + P ++ L+ L  L L+ N  S  
Sbjct: 139 LYLGNNKITDITV---LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISDL 193

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNS 227
               +  + N+ ++ELF+     +  +    L     +     +L +
Sbjct: 194 RA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 57/237 (24%), Positives = 92/237 (38%), Gaps = 18/237 (7%)

Query: 62  FQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYL 121
           F      +    +L    +   D    + + S+  +    +++       I    N+T L
Sbjct: 18  FSDDAFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKL 73

Query: 122 DLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPI 181
            L+ NKL+ + P     NL  L +L L +N+ +  LS  +  L  L  L L  N  S  I
Sbjct: 74  FLNGNKLTDIKP---LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGISD-I 127

Query: 182 PGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSF 241
            G +  +  ++ + L NN  T    + L +L  L  L L  N + S I P L   T L  
Sbjct: 128 NG-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQN 182

Query: 242 LALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSF 298
           L L+ N +S      L+ L  L+ L L           N   N     +++  + S 
Sbjct: 183 LYLSKNHISDLRA--LAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.9 bits (187), Expect = 2e-15
 Identities = 55/256 (21%), Positives = 100/256 (39%), Gaps = 42/256 (16%)

Query: 115 CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLAT 174
                  +L    ++  +       L  ++ +   ++  +  +   +  L N+T L L  
Sbjct: 23  FAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 77

Query: 175 NKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELG 234
           NK +     DI                       L  LKNL  L L  N +       L 
Sbjct: 78  NKLT-----DI---------------------KPLANLKNLGWLFLDENKVKDLSS--LK 109

Query: 235 LCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQ 294
               L  L+L  N +S  +   L +L +L  L L +N ++ +I+   +   T+L++L ++
Sbjct: 110 DLKKLKSLSLEHNGISD-IN-GLVHLPQLESLYLGNNKIT-DITV--LSRLTKLDTLSLE 164

Query: 295 NNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTL 354
           +N    +I P +  LTKLQ L+L +NH S      +  L +L+ L+L   +         
Sbjct: 165 DNQIS-DIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQ 220

Query: 355 WNLTNLLSLQLFFNNL 370
            NL    +++    +L
Sbjct: 221 SNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.1 bits (185), Expect = 4e-15
 Identities = 50/228 (21%), Positives = 94/228 (41%), Gaps = 17/228 (7%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           +  ++++I   +   I  L N+T L LN N     I   + +L  L +L +  N +    
Sbjct: 51  IIANNSDIKS-VQG-IQYLPNVTKLFLNGNKLT-DI-KPLANLKNLGWLFLDENKVKDLS 106

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
              L +L+K++ L L  N +   D +   ++P L  L L  N++T    + +     L  
Sbjct: 107 S--LKDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDT 160

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           L L  N++S ++P      L KL+ L L+ N     L   ++ L NL VL L + +    
Sbjct: 161 LSLEDNQISDIVP---LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNK 215

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNST 228
                  +     V+  + S     P  +    + +  +++ +    T
Sbjct: 216 PINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 14/180 (7%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L L HN IS      +  L  L  L L NN    +  + +  L++L  LS+ +N ++   
Sbjct: 117 LSLEHNGIS--DINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIV 172

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           P  L+ L K++ L L  N +   D    + + +L  L L   E   +  +      NL  
Sbjct: 173 P--LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQ---SNLVV 225

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTV-LRLATNKFSG 179
            +   N    L+   + ++ G  E  N+  +    + +  VS +    V +  A  +F G
Sbjct: 226 PNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLP--EFTNEVSFIFYQPVTIGKAKARFHG 283

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 42/256 (16%), Positives = 88/256 (34%), Gaps = 41/256 (16%)

Query: 309 LTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFN 368
             +     L +   +  +     +L S++++  + + +  ++   +  L N+  L L  N
Sbjct: 23  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGN 78

Query: 369 NLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGK 428
            L+  I P + ++ +L    ++ N++  +   ++  L  L   S+  N  S  I G    
Sbjct: 79  KLT-DIKP-LANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGIS-DING---- 129

Query: 429 FSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDG 488
                      +                LE L +  N  T      +   + L+ +  + 
Sbjct: 130 ---------LVHLP-------------QLESLYLGNNKITDITV--LSRLTKLDTLSLED 165

Query: 489 NQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELG 548
           NQ + +I        +L  + LS NH I ++       +NL  L+L   +          
Sbjct: 166 NQIS-DIV-PLAGLTKLQNLYLSKNH-ISDLRAL-AGLKNLDVLELFSQECLNKPINHQS 221

Query: 549 NLTRLGVLSLDSNELT 564
           NL     +      L 
Sbjct: 222 NLVVPNTVKNTDGSLV 237

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.6 bits (196), Expect = 2e-16
 Identities = 52/294 (17%), Positives = 82/294 (27%), Gaps = 32/294 (10%)

Query: 41  GDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFL---ETPDWSKFSNMPSLTHL 97
           G  S    L   +   +      +     ++ L +    +         +   +  L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 98  SLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLG-----KLEYLNLTDNQ 152
           +L   E+T   P  +L         L+L  +S    +     L       L+ L++    
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 153 FQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQL 212
                   V     L+ L L+ N   G       L                  P     L
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL-----------------CPLKFPTL 203

Query: 213 KNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLP-LSLSNLSRLNELGLSDN 271
           + L   +  M   +            L  L L+ N L       S    S+LN L LS  
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

Query: 272 FLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGP 325
            L  ++   L      L  L +  N    N  P    L ++  L L  N F   
Sbjct: 264 GLK-QVPKGLPAK---LSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.8 bits (194), Expect = 3e-16
 Identities = 43/216 (19%), Positives = 76/216 (35%), Gaps = 18/216 (8%)

Query: 1   LDLSHNNISGPIPPAIG--TLSNLTFLDLNNNLFEG--SIPSEMGDLSE--LQYLSVYNN 54
           L L +  ++G  PP +   T  +L  L+L N  +    +  +E+    +  L+ LS+   
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 55  SLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFS----NMPSLTHLSLCYNELT---LE 107
                   Q+     +  LDL  N          +      P+L  L+L    +      
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 108 FPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNL 167
             +       L  LDLS N L             +L  LNL+    + ++   +   + L
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKL 276

Query: 168 TVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTG 203
           +VL L+ N+     P     +  +  + L  N F  
Sbjct: 277 SVLDLSYNRLDR-NP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 62.6 bits (152), Expect = 6e-11
 Identities = 45/276 (16%), Positives = 84/276 (30%), Gaps = 22/276 (7%)

Query: 186 GLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFL--- 242
           G  S   L++  +        + + +  +L+ L +R   + S I         +S L   
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 243 -----ALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNS 297
                 +        L  +  +L+ LN   +S       ++         L+ L I    
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 298 FMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEI----GKLTSLEKLDLSGNQ---LSGTI 350
            +     ++ +   L  L L  N   G           K  +L+ L L        SG  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 351 PPTLWNLTNLLSLQLFFNNLSGTIPPEIGS-MASLVAFDVNTNQLHGELPENISRLVNLN 409
                    L  L L  N+L            + L + +++   L  ++P+ +     L+
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLS 277

Query: 410 KFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG 445
              +  N      P       P + N+S   N F  
Sbjct: 278 VLDLSYNRLD-RNP--SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 50/276 (18%), Positives = 89/276 (32%), Gaps = 23/276 (8%)

Query: 307 GLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPT---LWNLTNLLSL 363
           G  +    L            ++I K  SL++L +   ++   I      +  ++ L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 364 QLFFNNLSGTIPPEIGSMA--SLVAFDVNTNQLHGELPENISRLVNLNKFSV----FTNN 417
            L    ++GT PP +       L   ++            ++ L    K  +        
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQA 159

Query: 418 FSGSIPGDFGKFSPSLINVSFSNNSFSGE--LPYELCSGF--ALEELTVNGNNFT---GS 470
            S +   +  +  P+L  +  S+N   GE  L   LC      L+ L +         G 
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 471 LPACMRNCSNLNRVRFDGNQFTGNITRAFGVHP-RLDFIRLSGNHFIGEISPDWGECRNL 529
             A       L  +    N             P +L+ + LS    + ++         L
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKL 276

Query: 530 SNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565
           S L L  N++    P+    L ++G LSL  N    
Sbjct: 277 SVLDLSYNRLDR-NPSPDE-LPQVGNLSLKGNPFLD 310

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 80.3 bits (198), Expect = 2e-16
 Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 19/171 (11%)

Query: 12  IPPAIGTLSNLTFLDLNNNLFEGSIPSEM--GDLSELQYLSVYNNSL----NGAFPFQLS 65
           +P ++ +      LDL++N     + +E     L+ L  L + +N L    + AF     
Sbjct: 33  VPQSLPS--YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF----V 85

Query: 66  NLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILT-CRNLTYLDLS 124
            +  +RYLDL  N L T D   FS++ +L  L L  N +              L  L LS
Sbjct: 86  PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLS 144

Query: 125 LNKLSGLIPERLFTN---LGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRL 172
            N++S   P  L  +   L KL  L+L+ N+ +     ++ KL       L
Sbjct: 145 QNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 78.7 bits (194), Expect = 5e-16
 Identities = 42/163 (25%), Positives = 61/163 (37%), Gaps = 9/163 (5%)

Query: 116 RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLAT 174
                LDLS N LS L  E   T L  L  L L+ N     +S      + NL  L L++
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 175 NKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPE-- 232
           N            +  ++++ L+NN       ++   +  LQ L L  N + S  P E  
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELI 156

Query: 233 --LGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNE--LGLSDN 271
                   L  L L+ N+L       L  L    +  L L +N
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.7 bits (155), Expect = 4e-11
 Identities = 39/168 (23%), Positives = 63/168 (37%), Gaps = 15/168 (8%)

Query: 286 TELESLQIQNNSFMGNIPPEIGL--LTKLQYLFLYRNHFSGPIPSEI-GKLTSLEKLDLS 342
           +    L + +N+    +  E     LT L  L L  NH +  I SE    + +L  LDLS
Sbjct: 39  SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLS 96

Query: 343 GNQLSGTIPP-TLWNLTNLLSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPE 400
            N L  T+      +L  L  L L+ N++   +       MA L    ++ NQ+    P 
Sbjct: 97  SNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPV 153

Query: 401 ----NISRLVNLNKFSVFTNNFSGSIPGDFGKF-SPSLINVSFSNNSF 443
               + ++L  L    + +N        D  K  +     +   NN  
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 77.4 bits (191), Expect = 3e-16
 Identities = 44/213 (20%), Positives = 75/213 (35%), Gaps = 17/213 (7%)

Query: 19  LSNLTFLDLNNNLFEGSIPSEM-GDLSELQYLSV-YNNSL----NGAFPFQLSNLRKVRY 72
             +   L L       +IPS    +L  +  + V  + +L    + +F     NL KV +
Sbjct: 30  PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSF----YNLSKVTH 84

Query: 73  LDLGGN-FLETPDWSKFSNMPSLTHLSLCYNELT-LEFPSFILTCRNLTYLDLSLNKLSG 130
           +++     L   D      +P L  L +    L      + + +      L+++ N    
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 131 LIPERLFTNLGK-LEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDI--GL 187
            IP   F  L      L L +N F   +       + L  + L  NK+   I  D   G+
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203

Query: 188 MSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDL 220
            S   L+++   S T      L  LK L   + 
Sbjct: 204 YSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.9 bits (182), Expect = 5e-15
 Identities = 39/204 (19%), Positives = 77/204 (37%), Gaps = 9/204 (4%)

Query: 70  VRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNEL--TLEFPSFILTCRNLTYLDLSLNK 127
            + L L    L T     FSN+P+++ + +  +     LE  SF      +T++++   +
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF-YNLSKVTHIEIRNTR 91

Query: 128 LSGLIPERLFTNLGKLEYLNLTDNQFQG-KLSPNVSKLSNLTVLRLATNKFSGPIPGDI- 185
               I       L  L++L + +   +       V       +L +  N +   IP +  
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 186 -GLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPEL--GLCTNLSFL 242
            GL +    ++L+NN FT  +         L  + L  N   + I  +   G+ +  S L
Sbjct: 152 QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210

Query: 243 ALAMNQLSGGLPLSLSNLSRLNEL 266
            ++   ++      L +L  L   
Sbjct: 211 DVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 70.8 bits (174), Expect = 5e-14
 Identities = 42/253 (16%), Positives = 82/253 (32%), Gaps = 54/253 (21%)

Query: 116 RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLAT 174
            +   L L    L   IP   F+NL  +  + ++ +    +L  +    LS +T + +  
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 175 NKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELG 234
            +                L  +  ++           L  L+ L +    L    P    
Sbjct: 90  TR---------------NLTYIDPDALKE--------LPLLKFLGIFNTGLKM-FPDLTK 125

Query: 235 LCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWT-ELESLQI 293
           +                       +      L ++DN     I  N       E  +L++
Sbjct: 126 V----------------------YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163

Query: 294 QNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEI--GKLTSLEKLDLSGNQLSGTIP 351
            NN F  ++       TKL  ++L +N +   I  +   G  +    LD+S   ++  +P
Sbjct: 164 YNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALP 221

Query: 352 P-TLWNLTNLLSL 363
              L +L  L++ 
Sbjct: 222 SKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.3 bits (157), Expect = 8e-12
 Identities = 32/179 (17%), Positives = 68/179 (37%), Gaps = 12/179 (6%)

Query: 1   LDLSHNNISGPIPP-AIGTLSNLTFLDLNNNLFEGSIPSEM-GDLSELQYLSVYNNSLNG 58
           + +S +     +   +   LS +T +++ N      I  +   +L  L++L ++N  L  
Sbjct: 60  IYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK- 118

Query: 59  AFP--FQLSNLRKVRYLDLGGN-FLETPDWSKFSNMPSLT-HLSLCYNELTLEFPSFILT 114
            FP   ++ +      L++  N ++ +   + F  + + T  L L  N  T     +   
Sbjct: 119 MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN 177

Query: 115 CRNLTYLDLSLNKLSGLIPERLFTNLG-KLEYLNLTDNQFQGKLSPNVSKLSNLTVLRL 172
              L  + L+ NK   +I +  F  +      L+++       L      L +L  L  
Sbjct: 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG--LEHLKELIA 233

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.9 bits (151), Expect = 6e-11
 Identities = 30/172 (17%), Positives = 72/172 (41%), Gaps = 5/172 (2%)

Query: 234 GLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQI 293
            L  +   L L    L      + SNL  ++ + +S +    ++ ++   N +++  ++I
Sbjct: 28  SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87

Query: 294 QNNSFMGNIPPEI-GLLTKLQYLFLYRNHFSG-PIPSEIGKLTSLEKLDLSGNQLSGTIP 351
           +N   +  I P+    L  L++L ++       P  +++        L+++ N    +IP
Sbjct: 88  RNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 352 P-TLWNLTNLL-SLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPEN 401
                 L N   +L+L+ N  + ++     +   L A  +N N+    + ++
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 42/258 (16%), Positives = 79/258 (30%), Gaps = 55/258 (21%)

Query: 307 GLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPP-TLWNLTNLLSLQL 365
            L    Q L L   H           L ++ ++ +S +     +   + +NL+ +  +++
Sbjct: 28  SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87

Query: 366 FFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPEN--ISRLVNLNKFSVFTNNFSGSI 422
                   I P+    +  L    +    L    P+   +          +  N +  SI
Sbjct: 88  RNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 423 PGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLN 482
           P                 N+F G     LC+      L +  N FT S+           
Sbjct: 147 P----------------VNAFQG-----LCN--ETLTLKLYNNGFT-SVQGYA------- 175

Query: 483 RVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPD--WGECRNLSNLQLDRNKIS 540
              F+G               +LD + L+ N ++  I  D   G     S L + +  ++
Sbjct: 176 ---FNG--------------TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

Query: 541 GGIPAELGNLTRLGVLSL 558
                 L +L  L   + 
Sbjct: 219 ALPSKGLEHLKELIARNT 236

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 74.3 bits (183), Expect = 3e-15
 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 7/132 (5%)

Query: 47  QYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTL 106
             + +  N++    P   S  +K+R +DL  N +       F  + SL  L L  N++T 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 107 EFPSFI---LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSK 163
           E P  +   L   +L  L L+ NK++  +    F +L  L  L+L DN+ Q       S 
Sbjct: 94  ELPKSLFEGLF--SLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 164 LSNLTVLRLATN 175
           L  +  + LA N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 39/154 (25%), Positives = 56/154 (36%), Gaps = 27/154 (17%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           + L  N I    P A      L  +DL+NN              ++  L+        AF
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNN--------------QISELAP------DAF 76

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFIL-TCRNLT 119
                 LR +  L L GN +     S F  + SL  L L  N++             NL 
Sbjct: 77  ----QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLN 131

Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQF 153
            L L  NKL   I +  F+ L  ++ ++L  N F
Sbjct: 132 LLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 70.4 bits (173), Expect = 6e-14
 Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 5/134 (3%)

Query: 70  VRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNEL-TLEFPSFILTCRNLTYLDLSLNKL 128
           +  + L  N ++      FS    L  + L  N++  L   +F    R+L  L L  NK+
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLYGNKI 92

Query: 129 SGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGL 187
           + L P+ LF  L  L+ L L  N+    L  +    L NL +L L  NK      G    
Sbjct: 93  TEL-PKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 188 MSNIQLVELFNNSF 201
           +  IQ + L  N F
Sbjct: 151 LRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 31/158 (19%)

Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATN 175
            +T + L  N +  + P   F+   KL  ++L++NQ   +L+P+    L +L  L L  N
Sbjct: 33  TITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90

Query: 176 KFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPEL-- 233
                           ++ EL  + F G        L +LQ L L  N +N  +  +   
Sbjct: 91  ----------------KITELPKSLFEG--------LFSLQLLLLNANKINC-LRVDAFQ 125

Query: 234 GLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDN 271
            L  NL+ L+L  N+L      + S L  +  + L+ N
Sbjct: 126 DL-HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 64.3 bits (157), Expect = 6e-12
 Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 7/144 (4%)

Query: 227 STIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWT 286
           + IP    L   ++ + L  N +    P + S   +L  + LS+N +S E++ +      
Sbjct: 24  TEIPT--NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLR 80

Query: 287 ELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNHFSGPIPSEI-GKLTSLEKLDLSGN 344
            L SL +  N  +  +P  +   L  LQ L L  N  +  +  +    L +L  L L  N
Sbjct: 81  SLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDN 138

Query: 345 QLSGTIPPTLWNLTNLLSLQLFFN 368
           +L      T   L  + ++ L  N
Sbjct: 139 KLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 9/141 (6%)

Query: 186 GLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPEL--GLCTNLSFLA 243
            L   I  + L  N+     P +    K L+ +DL  N + S + P+   GL  +L+ L 
Sbjct: 29  NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGL-RSLNSLV 86

Query: 244 LAMNQLSGGLPLSL-SNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNI 302
           L  N+++  LP SL   L  L  L L+ N ++  +  +   +   L  L + +N     I
Sbjct: 87  LYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKL-QTI 143

Query: 303 PPEI-GLLTKLQYLFLYRNHF 322
                  L  +Q + L +N F
Sbjct: 144 AKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 13/146 (8%)

Query: 301 NIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPP-TLWNLTN 359
           N+P  I        + L +N      P        L ++DLS NQ+S  + P     L +
Sbjct: 29  NLPETI------TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS 81

Query: 360 LLSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-SRLVNLNKFSVFTNN 417
           L SL L+ N ++  +P  +   + SL    +N N+++  L  +    L NLN  S++ N 
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNK 139

Query: 418 FSGSIPGDFGKFSPSLINVSFSNNSF 443
              +I         ++  +  + N F
Sbjct: 140 LQ-TIAKGTFSPLRAIQTMHLAQNPF 164

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 73.5 bits (181), Expect = 5e-15
 Identities = 43/150 (28%), Positives = 61/150 (40%), Gaps = 16/150 (10%)

Query: 12  IPPAIGTLSNLTFLDLNNNLFEGSIPSEM-GDLSELQYLSVYNNSL----NGAFPFQLSN 66
           IP  I        L LNNN F     + +   L +L+ ++  NN +     GAF      
Sbjct: 26  IPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF----EG 79

Query: 67  LRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELT-LEFPSFI-LTCRNLTYLDLS 124
              V  + L  N LE      F  + SL  L L  N +T +   SFI L+  ++  L L 
Sbjct: 80  ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS--SVRLLSLY 137

Query: 125 LNKLSGLIPERLFTNLGKLEYLNLTDNQFQ 154
            N+++  +    F  L  L  LNL  N F 
Sbjct: 138 DNQITT-VAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 70.1 bits (172), Expect = 7e-14
 Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 30/158 (18%)

Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATN 175
               L L+ N+ + L    +F  L +L  +N ++N+    +        S +  + L +N
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSN 91

Query: 176 KFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPEL-- 233
                           +L  + +  F G        L++L+ L LR N +   +  +   
Sbjct: 92  ----------------RLENVQHKMFKG--------LESLKTLMLRSNRITC-VGNDSFI 126

Query: 234 GLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDN 271
           GL +++  L+L  NQ++   P +   L  L+ L L  N
Sbjct: 127 GL-SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 32/158 (20%)

Query: 73  LDLGGNFLET-PDWSKFSNMPSLTHLSLCYNELT-LEFPSF-ILTCRNLTYLDLSLNKLS 129
           L L  N          F  +P L  ++   N++T +E  +F   +   +  + L+ N+L 
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS--GVNEILLTSNRLE 94

Query: 130 GLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLM 188
            +   ++F  L  L+ L L  N+    +  +    LS++ +L L  N             
Sbjct: 95  NV-QHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDN------------- 139

Query: 189 SNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN 226
              Q+  +   +F          L +L  L+L  N  N
Sbjct: 140 ---QITTVAPGAFDT--------LHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 22/138 (15%), Positives = 52/138 (37%), Gaps = 9/138 (6%)

Query: 286 TELESLQIQNNSFMGNIPPEIGL--LTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSG 343
                L++ NN F   +        L +L+ +    N  +          + + ++ L+ 
Sbjct: 32  QYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90

Query: 344 NQLSGTIPP-TLWNLTNLLSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPEN 401
           N+L   +       L +L +L L  N ++  +  +    ++S+    +  NQ+   +   
Sbjct: 91  NRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPG 147

Query: 402 I-SRLVNLNKFSVFTNNF 418
               L +L+  ++  N F
Sbjct: 148 AFDTLHSLSTLNLLANPF 165

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 46/170 (27%), Positives = 68/170 (40%), Gaps = 15/170 (8%)

Query: 12  IPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSL----NGAFPFQLSNL 67
           +P  I    +   LDL +        +    L++L +L++  N L     G F   L+ L
Sbjct: 29  VPSGIPA--DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD-DLTEL 85

Query: 68  RKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELT-LEFPSF-ILTCRNLTYLDLSL 125
                L L  N L +     F ++  L  L L  N+L  L    F  LT   L  L L+ 
Sbjct: 86  G---TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT--KLKELRLNT 140

Query: 126 NKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATN 175
           N+L  + P   F  L  L+ L+L+ NQ Q        +L  L  + L  N
Sbjct: 141 NQLQSI-PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 71.3 bits (175), Expect = 5e-14
 Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 17/161 (10%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGD-LSELQYLSVYNNSL--- 56
           LDL    ++         L+ LT+L+L+ N  + ++ + + D L+EL  L + NN L   
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASL 98

Query: 57  -NGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFI--- 112
             G F     +L ++  L LGGN L++     F  +  L  L L  N+L    P+     
Sbjct: 99  PLGVF----DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDK 153

Query: 113 LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQF 153
           LT  NL  L LS N+L   +P   F  LGKL+ + L  NQF
Sbjct: 154 LT--NLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 9/157 (5%)

Query: 216 QHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSG 275
           + LDL+   L +         T L++L L  NQL         +L+ L  LGL++N L+ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 276 EISANLIGNWTELESLQIQNNSFMGNIPPEIGL---LTKLQYLFLYRNHFSGPIPSEI-G 331
            +   +  + T+L+ L +  N  + ++P   G+   LTKL+ L L  N     IP+    
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQ-LKSLPS--GVFDRLTKLKELRLNTNQLQS-IPAGAFD 152

Query: 332 KLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFN 368
           KLT+L+ L LS NQL          L  L ++ LF N
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 60/208 (28%), Positives = 73/208 (35%), Gaps = 58/208 (27%)

Query: 119 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKF 177
             LDL    L+ L  +  F  L KL +LNL  NQ Q  LS  V   L+ L  L LA N  
Sbjct: 38  EKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANN-- 93

Query: 178 SGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPEL--GL 235
                         QL  L    F          L  L  L L  N L S +P  +   L
Sbjct: 94  --------------QLASLPLGVFD--------HLTQLDKLYLGGNQLKS-LPSGVFDRL 130

Query: 236 CTNLSFLALAMNQLSGGLPLSL-SNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQ 294
            T L  L L  NQL   +P      L+ L  L LS N L                   + 
Sbjct: 131 -TKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQS-----------------VP 171

Query: 295 NNSFMGNIPPEIGLLTKLQYLFLYRNHF 322
           + +F          L KLQ + L+ N F
Sbjct: 172 HGAFDR--------LGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 51/193 (26%), Positives = 68/193 (35%), Gaps = 33/193 (17%)

Query: 326 IPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEI-GSMASL 384
           +PS I      EKLDL    L+     T   LT L  L L +N L  T+   +   +  L
Sbjct: 29  VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTEL 85

Query: 385 VAFDVNTNQLHGELPENI-SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSF 443
               +  NQL   LP  +   L  L+K  +  N       G F +    L          
Sbjct: 86  GTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR----LTK-------- 132

Query: 444 SGELPYELCSGFALEELTVNGNNFTGSLPA-CMRNCSNLNRVRFDGNQFTGNITRAFGVH 502
                        L+EL +N N    S+PA      +NL  +    NQ       AF   
Sbjct: 133 -------------LKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178

Query: 503 PRLDFIRLSGNHF 515
            +L  I L GN F
Sbjct: 179 GKLQTITLFGNQF 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 25/208 (12%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFE--GSIPSEMGDLSELQYLSVYNNSLN- 57
            +L   +++         L+++  +  NN+  +    I      L  ++YL++  N L+ 
Sbjct: 24  ANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQGIQY----LPNVRYLALGGNKLHD 77

Query: 58  -GAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFI---L 113
             A       L  + YL L GN L++     F  + +L  L L  N+L    P  +   L
Sbjct: 78  ISAL----KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKL 132

Query: 114 TCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRL 172
           T  NLTYL+L+ N+L  L P+ +F  L  L  L+L+ NQ Q  L   V  KL+ L  LRL
Sbjct: 133 T--NLTYLNLAHNQLQSL-PKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRL 188

Query: 173 ATNKFSGPIP-GDIGLMSNIQLVELFNN 199
             N+    +P G    ++++Q + L +N
Sbjct: 189 YQNQLKS-VPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 19/160 (11%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGD-LSELQYLSVYNNSL--- 56
           L L  N +      A+  L+NLT+L L  N  + S+P+ + D L+ L+ L +  N L   
Sbjct: 68  LALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSL 124

Query: 57  -NGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFI--- 112
            +G F  +L+NL    YL+L  N L++     F  + +LT L L YN+L    P  +   
Sbjct: 125 PDGVFD-KLTNLT---YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDK 179

Query: 113 LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQ 152
           LT   L  L L  N+L   +P+ +F  L  L+Y+ L DN 
Sbjct: 180 LT--QLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 58/261 (22%), Positives = 91/261 (34%), Gaps = 78/261 (29%)

Query: 119 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFS 178
              +L    ++  +       L  ++ +   ++  +      +  L N+  L L  NK  
Sbjct: 22  IKANLKKKSVTDAVT---QNELNSIDQIIANNSDIK--SVQGIQYLPNVRYLALGGNKLH 76

Query: 179 GPIPGDIGLMSNIQLVELFNNSFTGQIPSSLG---QLKNLQHLDLRMNALNSTIPPEL-- 233
                                         +    +L NL +L L  N L  ++P  +  
Sbjct: 77  -----------------------------DISALKELTNLTYLILTGNQL-QSLPNGVFD 106

Query: 234 GLCTNLSFLALAMNQLS---GGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELES 290
            L TNL  L L  NQL     G+   L+NL     L L+ N               +L+S
Sbjct: 107 KL-TNLKELVLVENQLQSLPDGVFDKLTNL---TYLNLAHN---------------QLQS 147

Query: 291 LQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNHFSGPIPSEI-GKLTSLEKLDLSGNQLSG 348
           L           P  +   LT L  L L  N     +P  +  KLT L+ L L  NQL  
Sbjct: 148 L-----------PKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLK- 194

Query: 349 TIPPTLW-NLTNLLSLQLFFN 368
           ++P  ++  LT+L  + L  N
Sbjct: 195 SVPDGVFDRLTSLQYIWLHDN 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 46/235 (19%), Positives = 84/235 (35%), Gaps = 19/235 (8%)

Query: 62  FQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYL 121
           F    L      +LG   +   D      +  + + +   + +     + +    NL  L
Sbjct: 13  FPDPGLANAVKQNLGKQSVT--DLVSQKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKEL 68

Query: 122 DLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPI 181
            LS N++S L P     +L KLE L++  N+ +   + N    + L+ L L  N+     
Sbjct: 69  HLSHNQISDLSP---LKDLTKLEELSVNRNRLK---NLNGIPSACLSRLFLDNNELRDTD 122

Query: 182 PGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSF 241
              +  + N++++ + NN         LG L  L+ LDL  N + +T    L     +++
Sbjct: 123 S--LIHLKNLEILSIRNNKLK--SIVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNW 176

Query: 242 LALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNN 296
           + L   +           L   N +   D      IS   I N        +   
Sbjct: 177 IDLTGQKCVNEPVKYQPELYITNTVKDPDGRW---ISPYYISNGGSYVDGCVLWE 228

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 16/176 (9%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
            +L   +++  +      LS +   + +N+  + S+ + M   + L+ L + +N ++   
Sbjct: 24  QNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSHNQISDLS 79

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           P  L +L K+  L +  N L+  +         L+ L L  NEL       ++  +NL  
Sbjct: 80  P--LKDLTKLEELSVNRNRLKNLN---GIPSACLSRLFLDNNELR--DTDSLIHLKNLEI 132

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNK 176
           L +  NKL  ++       L KLE L+L  N+        +++L  +  + L   K
Sbjct: 133 LSIRNNKLKSIVM---LGFLSKLEVLDLHGNEIT-NTGG-LTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.7 bits (158), Expect = 8e-12
 Identities = 45/211 (21%), Positives = 84/211 (39%), Gaps = 16/211 (7%)

Query: 160 NVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLD 219
               L+N     L     +  +      +S +Q     N++      + +    NL+ L 
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELH 69

Query: 220 LRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISA 279
           L  N + S + P L   T L  L++  N+L     +  + LSRL    L +N L  +  +
Sbjct: 70  LSHNQI-SDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLF---LDNNELR-DTDS 123

Query: 280 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKL 339
             + +   LE L I+NN  + +I   +G L+KL+ L L+ N  +      + +L  +  +
Sbjct: 124 --LIHLKNLEILSIRNNK-LKSIVM-LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWI 177

Query: 340 DLSGNQLSGTIPPTLWNLTNLLSLQLFFNNL 370
           DL+G +           L    +++      
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.7 bits (158), Expect = 9e-12
 Identities = 38/217 (17%), Positives = 76/217 (35%), Gaps = 19/217 (8%)

Query: 16  IGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDL 75
              L+N    +L       +      +LS +Q  +  N+++       +     ++ L L
Sbjct: 15  DPGLANAVKQNLGKQ--SVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHL 70

Query: 76  GGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPER 135
             N +   D S   ++  L  LS+  N L        +    L+ L L  N+L       
Sbjct: 71  SHNQIS--DLSPLKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDNNELRDTDS-- 123

Query: 136 LFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVE 195
              +L  LE L++ +N+ +  +   +  LS L VL L  N+ +      +  +  +  ++
Sbjct: 124 -LIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWID 178

Query: 196 LFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPE 232
           L       +    +     L   +   +     I P 
Sbjct: 179 LTGQKCVNE---PVKYQPELYITNTVKDPDGRWISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 17/182 (9%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
            +  ++NI       +   +NL  L L++N  + S  S + DL++L+ LSV  N L    
Sbjct: 46  FNGDNSNIQSLAG--MQFFTNLKELHLSHN--QISDLSPLKDLTKLEELSVNRNRLKNLN 101

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
               + L     L L  N L   D     ++ +L  LS+  N+L       +     L  
Sbjct: 102 GIPSACLS---RLFLDNNELR--DTDSLIHLKNLEILSIRNNKLK--SIVMLGFLSKLEV 154

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           LDL  N+++        T L K+ +++LT  +     +  V     L +     +     
Sbjct: 155 LDLHGNEITNTGG---LTRLKKVNWIDLTGQKCV---NEPVKYQPELYITNTVKDPDGRW 208

Query: 181 IP 182
           I 
Sbjct: 209 IS 210

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 67.4 bits (165), Expect = 7e-13
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 8/132 (6%)

Query: 71  RYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFI---LTCRNLTYLDLSLNK 127
           + L L  N +   +   F ++ +L  L L  N+L    P  +   LT   LT LDL  N+
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLT--QLTVLDLGTNQ 99

Query: 128 LSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGL 187
           L+ L P  +F  L  L+ L +  N+   +L   + +L++LT L L  N+      G    
Sbjct: 100 LTVL-PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

Query: 188 MSNIQLVELFNN 199
           +S++    LF N
Sbjct: 158 LSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 46/145 (31%), Positives = 61/145 (42%), Gaps = 12/145 (8%)

Query: 12  IPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSL----NGAFPFQLSNL 67
           +P  I T  N   L L++N      P     L  L+ L + +N L     G F   L+ L
Sbjct: 34  VPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD-SLTQL 90

Query: 68  RKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNK 127
                LDLG N L     + F  +  L  L +C N+LT E P  I    +LT+L L  N+
Sbjct: 91  TV---LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146

Query: 128 LSGLIPERLFTNLGKLEYLNLTDNQ 152
           L   IP   F  L  L +  L  N 
Sbjct: 147 LKS-IPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 42/157 (26%), Positives = 54/157 (34%), Gaps = 34/157 (21%)

Query: 216 QHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLS---GGLPLSLSNLSRLNELGLSDNF 272
           Q L L  N +    P       NL  L L  NQL     G+  SL+    L  L L  N 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ---LTVLDLGTN- 98

Query: 273 LSGEISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNHFSGPIPSEIG 331
                         +L  L           P  +   L  L+ LF+  N  +  +P  I 
Sbjct: 99  --------------QLTVL-----------PSAVFDRLVHLKELFMCCNKLTE-LPRGIE 132

Query: 332 KLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFN 368
           +LT L  L L  NQL          L++L    LF N
Sbjct: 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 8/142 (5%)

Query: 302 IPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWN-LTNL 360
           +P  I      Q L+L+ N  +   P     L +L++L L  NQL   +P  +++ LT L
Sbjct: 34  VPAGIPTNA--QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQL 90

Query: 361 LSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFS 419
             L L  N L+  +P  +   +  L    +  N+L  ELP  I RL +L   ++  N   
Sbjct: 91  TVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148

Query: 420 GSIPGDFGKFSPSLINVSFSNN 441
               G F + S SL +     N
Sbjct: 149 SIPHGAFDRLS-SLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 10/136 (7%)

Query: 165 SNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA 224
           +N  +L L  N+ +   PG    + N++ + L +N            L  L  LDL  N 
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 225 LNSTIPP----ELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISAN 280
           L   +P      L    +L  L +  N+L+  LP  +  L+ L  L L  N L   I   
Sbjct: 100 LTV-LPSAVFDRL---VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHG 153

Query: 281 LIGNWTELESLQIQNN 296
                + L    +  N
Sbjct: 154 AFDRLSSLTHAYLFGN 169

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 60/373 (16%), Positives = 118/373 (31%), Gaps = 40/373 (10%)

Query: 1   LDLSHNNISGPIPPAIGTLS----NLTFLDLNN---NLFEGSIPSEMGDLSELQYLSVYN 53
           LDL  +++       +        +L  L+++     +   ++   +     L+ L +  
Sbjct: 161 LDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220

Query: 54  NSLNGAFPFQLSNLRKVRYLDLGGNFLETPD------WSKFSNMPSLTHLSLCYNELTLE 107
                     L    ++  L  GG   E             S    L  LS  ++ +   
Sbjct: 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAY 280

Query: 108 FPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNL 167
            P+    C  LT L+LS   +      +L     KL+ L + D      L    S   +L
Sbjct: 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDL 340

Query: 168 TVLRLATNKFSGPIP----GDIGLMS------NIQLVELFNNSFTGQIPSSLGQ-LKNLQ 216
             LR+  ++     P     + GL+S       ++ V  F    T     ++ +   N+ 
Sbjct: 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMT 400

Query: 217 HLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGE 276
              L              +    +   L +  L  G    + +   L  L LS   L+ +
Sbjct: 401 RFRLC-------------IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS-GLLTDK 446

Query: 277 ISANLIGNWTELESLQIQNNSFMGNIPPEIGL-LTKLQYLFLYRNHFSGP-IPSEIGKLT 334
           +   +     ++E L +            +      L+ L +    F    + +   KL 
Sbjct: 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506

Query: 335 SLEKLDLSGNQLS 347
           ++  L +S   +S
Sbjct: 507 TMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 63/466 (13%), Positives = 128/466 (27%), Gaps = 53/466 (11%)

Query: 88  FSNMPSLTHLSL---------------CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLI 132
               P +  + L                   +     +   +   L  + L    ++   
Sbjct: 62  IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDC 121

Query: 133 PERLFTNLGKLEYLNLTD-NQFQGK-LSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSN 190
            E +  +    + L L+    F    L+   +   NL  L L  +         +    +
Sbjct: 122 LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181

Query: 191 I--QLVELFNNSFTGQI-PSSLGQL----KNLQHLDLRMNALNSTIPPELGLCTNLSFLA 243
               LV L  +    ++  S+L +L     NL+ L L        +   L     L  L 
Sbjct: 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG 241

Query: 244 LAM------NQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNS 297
                      +  GL ++LS    L  L    + +   + A +    + L +L +   +
Sbjct: 242 TGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA-VYSVCSRLTTLNLSYAT 300

Query: 298 FMGN-IPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWN 356
                +   +    KLQ L++        +         L +L +  ++     P     
Sbjct: 301 VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360

Query: 357 LTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVN-TNQLHGELPENISRLVNLN------ 409
              L+S+ +    L            S++ F    TN     +  N   +          
Sbjct: 361 EQGLVSVSMGCPKLE-----------SVLYFCRQMTNAALITIARNRPNMTRFRLCIIEP 409

Query: 410 -KFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFT 468
                 T        G   +    L  +S S         Y       +E L+V     +
Sbjct: 410 KAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDS 469

Query: 469 G-SLPACMRNCSNLNRVRFDGNQFTGN-ITRAFGVHPRLDFIRLSG 512
              +   +  C +L ++      F    +         +  + +S 
Sbjct: 470 DLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 61/484 (12%), Positives = 122/484 (25%), Gaps = 78/484 (16%)

Query: 113 LTCR------NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSN 166
           L C+            + +     + P  +     K+  + L         +        
Sbjct: 32  LVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGG 91

Query: 167 LTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQ-LKNLQHLDLRMNAL 225
                +     S            ++ + L     T      + +  KN + L L     
Sbjct: 92  YVYPWIEAMSSSYT---------WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS--- 139

Query: 226 NSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDN---FLSGEISANLI 282
                     C   S         + GL    +    L EL L ++    +SG   ++  
Sbjct: 140 ----------CEGFS---------TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180

Query: 283 GNWTELESLQIQNNSFM---GNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKL 339
             +T L SL I   +       +   +     L+ L L R      + + + +   LE+L
Sbjct: 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL 240

Query: 340 DLSGNQLSGT------IPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQ 393
              G            +   L     L  L  F++ +   +P      + L   +++   
Sbjct: 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT 300

Query: 394 LHGE-LPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELC 452
           +    L + + +   L +  V        +          L  +    +      P    
Sbjct: 301 VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV-LASTCKDLRELRVFPSEPFVMEPNVAL 359

Query: 453 SGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVH-PRLDFIRLS 511
           +   L  +                 C  L  V +   Q T         + P +   RL 
Sbjct: 360 TEQGLVSV--------------SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405

Query: 512 GNHFIGEISPDWGE-----------CRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDS 560
                                    C++L  L L                 ++ +LS+  
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAF 465

Query: 561 NELT 564
              +
Sbjct: 466 AGDS 469

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 53/323 (16%), Positives = 86/323 (26%), Gaps = 63/323 (19%)

Query: 73  LDLGGNFLETPDWSKF----SNMPSLTHLSLCYNELTLE----FPSFILTCRNLTYLDLS 124
             L  + + T D            S+  + L  N +  E        I + ++L   + S
Sbjct: 9   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 68

Query: 125 LNKLSGLIPERL---------FTNLGKLEYLNLTDNQFQGK----LSPNVSKLSNLTVLR 171
                 +  E                KL  + L+DN F       L   +SK + L  L 
Sbjct: 69  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 128

Query: 172 LATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN----S 227
           L  N       G            +        +         L+ +    N L      
Sbjct: 129 LHNNGL-----GPQAGAK------IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177

Query: 228 TIPPELGLCTNLSFLALAMNQL-----SGGLPLSLSNLSRLNELGLSDNFLSGE---ISA 279
                      L  + +  N +        L   L+    L  L L DN  +       A
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237

Query: 280 NLIGNWTELESLQIQNNSFMGNIPPE----------IGLLTKLQYLFLYRNHFSGPIPSE 329
             + +W  L  L + +      +                   LQ L L  N         
Sbjct: 238 IALKSWPNLRELGLNDC----LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293

Query: 330 IG-----KLTSLEKLDLSGNQLS 347
           +      K+  L  L+L+GN+ S
Sbjct: 294 LKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 47/340 (13%), Positives = 85/340 (25%), Gaps = 75/340 (22%)

Query: 1   LDLSHNNISG----PIPPAIGTLSNLTFLDLNNNLF--EG--SIPSEMGDLSELQYLSVY 52
             L  + I+      +   +    ++  + L+ N    E    +   +    +L+     
Sbjct: 9   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 68

Query: 53  NNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLE----F 108
           +             LR +                     P L  + L  N          
Sbjct: 69  DIFTGRVKDEIPEALRLLL--------------QALLKCPKLHTVRLSDNAFGPTAQEPL 114

Query: 109 PSFILTCRNLTYLDLSLNK------------LSGLIPERLFTNLGKLEYLNLTDNQFQGK 156
             F+     L +L L  N             L  L   +   N   L  +    N+ +  
Sbjct: 115 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174

Query: 157 ----LSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQL 212
                +        L  +++  N          G+   +                 L   
Sbjct: 175 SMKEWAKTFQSHRLLHTVKMVQNGI-----RPEGIEHLLL--------------EGLAYC 215

Query: 213 KNLQHLDLRMNALNST----IPPELGLCTNLSFLALAMNQLSG------GLPLSLSNLSR 262
           + L+ LDL+ N         +   L    NL  L L    LS           S      
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG 275

Query: 263 LNELGLSDNFLSGE----ISANLIGNWTELESLQIQNNSF 298
           L  L L  N +  +    +   +     +L  L++  N F
Sbjct: 276 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 52/293 (17%), Positives = 92/293 (31%), Gaps = 65/293 (22%)

Query: 1   LDLSHNNISGP----------IPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDL----SEL 46
            + S                 +  A+     L  + L++N F  +    + D     + L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 47  QYLSVYNNSL-------------NGAFPFQLSNLRKVRYLDLGGNFLE---TPDWSK-FS 89
           ++L ++NN L               A   +  N   +R +  G N LE     +W+K F 
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184

Query: 90  NMPSLTHLSLCYNELTLE-----FPSFILTCRNLTYLDLSLNKLSG----LIPERLFTNL 140
           +   L  + +  N +  E         +  C+ L  LDL  N  +      +   L +  
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW- 243

Query: 141 GKLEYLNLTDNQFQGK----LSPNVSKLSN--LTVLRLATNKFSGPIPGDIGL------- 187
             L  L L D     +    +    SKL N  L  LRL  N+          +       
Sbjct: 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI-----ELDAVRTLKTVI 298

Query: 188 ---MSNIQLVELFNNSFT--GQIPSSLGQ-LKNLQHLDLRMNALNSTIPPELG 234
              M ++  +EL  N F+    +   + +        +L        +  E  
Sbjct: 299 DEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEE 351

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 58/358 (16%), Positives = 101/358 (28%), Gaps = 79/358 (22%)

Query: 215 LQHLDLRMNALNS----TIPPELGLCTNLSFLALAMNQLS--GGLPLS--LSNLSRLNEL 266
           ++   L+++A+ +    ++   L    ++  + L+ N +       LS  +++   L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 267 GLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSG-- 324
             SD F               L++L                   KL  + L  N F    
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLK---------------CPKLHTVRLSDNAFGPTA 110

Query: 325 --PIPSEIGKLTSLEKLDLSGNQLS-------------GTIPPTLWNLTNLLSLQLFFNN 369
             P+   + K T LE L L  N L                +     N   L S+    N 
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170

Query: 370 LSGTIPPEIGSM----ASLVAFDVNTNQLHGE-----LPENISRLVNLNKFSVFTNNFSG 420
           L      E          L    +  N +  E     L E ++    L    +  N F  
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-- 228

Query: 421 SIPGDFG--------KFSPSLINVSFSNNSFSGELPYELCSGFA------LEELTVNGNN 466
                 G        K  P+L  +  ++   S      +   F+      L+ L +  N 
Sbjct: 229 ---THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285

Query: 467 FTGS-----LPACMRNCSNLNRVRFDGNQFT------GNITRAFGVHPRLDFIRLSGN 513
                             +L  +  +GN+F+        I   F    R +   L   
Sbjct: 286 IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 40/280 (14%), Positives = 85/280 (30%), Gaps = 51/280 (18%)

Query: 312 LQYLFLYRNHFSG----PIPSEIGKLTSLEKLDLSGNQLSGT----IPPTLWNLTNLLSL 363
           ++   L  +  +      + + + +  S++++ LSGN +       +   + +  +L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 364 QLFFNNLSGTIPPEIGSMASLV-AFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSI 422
           +               ++  L+ A                  L  +    +  N F  + 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPK------------LHTVR---LSDNAFGPTA 110

Query: 423 PGDFGKF---SPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCS 479
                 F      L ++   NN    +   ++    AL+EL VN            +N  
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQELAVNKK---------AKNAP 159

Query: 480 NLNRVRFDGNQFTGN----ITRAFGVHPRLDFIRLSGNHFIGE-----ISPDWGECRNLS 530
            L  +    N+          + F  H  L  +++  N    E     +      C+ L 
Sbjct: 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219

Query: 531 NLQLDRNKISG----GIPAELGNLTRLGVLSLDSNELTGK 566
            L L  N  +      +   L +   L  L L+   L+ +
Sbjct: 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.1 bits (163), Expect = 7e-12
 Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 17/130 (13%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNN---SLN 57
           L L+H +++  +   +  L  +T LDL++N    ++P  +  L  L+ L   +N   +++
Sbjct: 446 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD 502

Query: 58  GAFPFQLSNLRKVRYLDLGGNFLET-PDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCR 116
           G     ++NL +++ L L  N L+         + P L  L+L  N L  +         
Sbjct: 503 G-----VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLA 556

Query: 117 ----NLTYLD 122
               +++ + 
Sbjct: 557 EMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.8 bits (157), Expect = 4e-11
 Identities = 47/228 (20%), Positives = 72/228 (31%), Gaps = 12/228 (5%)

Query: 182 PGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSF 241
             D      +   EL     T  + S L   K LQ L+        TI   +     L  
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM---RALDP 397

Query: 242 LALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGN 301
           L      L     L   +  R   L    +    E S   +  + ++  L + +      
Sbjct: 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM-EYADVRVLHLAHKDL--T 454

Query: 302 IPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLL 361
           +   +  L  + +L L  N     +P  +  L  LE L  S N L   +   + NL  L 
Sbjct: 455 VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQ 511

Query: 362 SLQLFFNNLSG-TIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNL 408
            L L  N L        + S   LV  ++  N L  +      RL  +
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.0 bits (129), Expect = 7e-08
 Identities = 28/147 (19%), Positives = 49/147 (33%), Gaps = 13/147 (8%)

Query: 16  IGTLSNLTFLDLNNNLFEGSIPSEM--------GDLSELQYLSVYNNSLNGAFPFQLSNL 67
           +   S L  +D     +   + S+          + ++++ L + +  L       L  L
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQL 462

Query: 68  RKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNK 127
             V +LDL  N L     +  + +  L  L    N L       +     L  L L  N+
Sbjct: 463 LLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNR 519

Query: 128 LSGLIPERLFTNLGKLEYLNLTDNQFQ 154
           L      +   +  +L  LNL  N   
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 44/332 (13%), Positives = 82/332 (24%), Gaps = 13/332 (3%)

Query: 239 LSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSF 298
             +L            + +S       +  S     G     L+    E           
Sbjct: 232 HRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPD 291

Query: 299 MGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLT 358
             N P  + L   L    L                 S ++  L  ++             
Sbjct: 292 GRNRPSHVWL-CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDE 349

Query: 359 NLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNF 418
            L   +L     +  +  E+ S   L   +         +   +  L  L         F
Sbjct: 350 QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 408

Query: 419 SGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNC 478
           S     D          +    + F  E          +  L +   + T  L   +   
Sbjct: 409 STLKAVDP----MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQL 462

Query: 479 SNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNK 538
             +  +    N+    +  A      L+ ++ S N  +  +         L  L L  N+
Sbjct: 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA-LENVDG-VANLPRLQELLLCNNR 519

Query: 539 ISG-GIPAELGNLTRLGVLSLDSNELTGKNSY 569
           +        L +  RL +L+L  N L  +   
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 95  THLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQ 154
           T L L  N+ TL  P  +   ++LT +DLS N++S L   + F+N+ +L  L L+ N+ +
Sbjct: 34  TELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRLR 91

Query: 155 GKLSPNV-SKLSNLTVLRLATNKFSGPIP-GDIGLMSNIQLVELFNN 199
             + P     L +L +L L  N  S  +P G    +S +  + +  N
Sbjct: 92  C-IPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 8/110 (7%)

Query: 47  QYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTL 106
             L +  N      P +LSN + +  +DL  N + T     FSNM  L  L L YN L  
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR- 91

Query: 107 EFPSFI---LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQF 153
             P      L   +L  L L  N +S  +PE  F +L  L +L +  N  
Sbjct: 92  CIPPRTFDGLK--SLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 31/132 (23%)

Query: 100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSP 159
           C N+     P  I    ++T L L  N+ + L+P+   +N   L  ++L++N+    LS 
Sbjct: 17  CSNKGLKVLPKGIPR--DVTELYLDGNQFT-LVPKE-LSNYKHLTLIDLSNNRIS-TLSN 71

Query: 160 NV-SKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHL 218
              S ++ L  L L+ N                +L  +   +F G        LK+L+ L
Sbjct: 72  QSFSNMTQLLTLILSYN----------------RLRCIPPRTFDG--------LKSLRLL 107

Query: 219 DLRMNALNSTIP 230
            L  N ++  +P
Sbjct: 108 SLHGNDISV-VP 118

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 11/107 (10%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGD-LSELQYLSVYNNSL--- 56
           L L  N  +  +P  +    +LT +DL+NN    ++ ++    +++L  L +  N L   
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 57  -NGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYN 102
               F      L+ +R L L GN +       F+++ +L+HL++  N
Sbjct: 94  PPRTF----DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 13/119 (10%)

Query: 301 NIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLW-NLTN 359
            IP        +  L+L  N F+  +P E+     L  +DLS N++S T+    + N+T 
Sbjct: 28  GIP------RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQ 79

Query: 360 LLSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-SRLVNLNKFSVFTN 416
           LL+L L +N L   IPP     + SL    ++ N +   +PE   + L  L+  ++  N
Sbjct: 80  LLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 28/132 (21%)

Query: 216 QHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSG 275
             L L  N   + +P EL    +L+ + L+ N++S     S SN+++L  L LS N    
Sbjct: 34  TELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN---- 88

Query: 276 EISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEI-GKLT 334
                       L  +     +F G        L  L+ L L+ N  S  +P      L+
Sbjct: 89  -----------RLRCI--PPRTFDG--------LKSLRLLSLHGNDISV-VPEGAFNDLS 126

Query: 335 SLEKLDLSGNQL 346
           +L  L +  N L
Sbjct: 127 ALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 33/137 (24%), Positives = 50/137 (36%), Gaps = 36/137 (26%)

Query: 237 TNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNN 296
            +++ L L  NQ +  +P  LSN   L  + LS+N                    +I   
Sbjct: 31  RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNN--------------------RIST- 68

Query: 297 SFMGNIPPEIGL---LTKLQYLFLYRNHFSGPIPSEI-GKLTSLEKLDLSGNQLSGTIPP 352
                +         +T+L  L L  N     IP      L SL  L L GN +S  +P 
Sbjct: 69  -----LSN--QSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSLRLLSLHGNDIS-VVPE 119

Query: 353 TLW-NLTNLLSLQLFFN 368
             + +L+ L  L +  N
Sbjct: 120 GAFNDLSALSHLAIGAN 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 9/133 (6%)

Query: 71  RYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFI---LTCRNLTYLDLSLNK 127
            YLDL  N L++     F  + SLT L L  N+L    P+ +   LT  +LTYL+LS N+
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLT--SLTYLNLSTNQ 87

Query: 128 LSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIG 186
           L  L P  +F  L +L+ L L  NQ Q  L   V  KL+ L  LRL  N+      G   
Sbjct: 88  LQSL-PNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145

Query: 187 LMSNIQLVELFNN 199
            ++++Q + L +N
Sbjct: 146 RLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 17/149 (11%)

Query: 12  IPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSL----NGAFPFQLSNL 67
           +P  I      T+LDL  N  +        +L+ L  L +  N L    NG F  +L++L
Sbjct: 22  VPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN-KLTSL 78

Query: 68  RKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFI---LTCRNLTYLDLS 124
               YL+L  N L++     F  +  L  L+L  N+L    P  +   LT   L  L L 
Sbjct: 79  T---YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLT--QLKDLRLY 132

Query: 125 LNKLSGLIPERLFTNLGKLEYLNLTDNQF 153
            N+L   +P+ +F  L  L+Y+ L DN +
Sbjct: 133 QNQLKS-VPDGVFDRLTSLQYIWLHDNPW 160

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 286 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQ 345
            +   L ++ NS           LT L  L+L  N           KLTSL  L+LS NQ
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 346 LSGTIPPTLWN-LTNLLSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQL 394
           L  ++P  +++ LT L  L L  N L  ++P  +   +  L    +  NQL
Sbjct: 88  LQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 11/144 (7%)

Query: 302 IPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWN-LTNL 360
           +P  I   T   YL L  N           +LTSL +L L GN+L  ++P  ++N LT+L
Sbjct: 22  VPTGIPAQT--TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSL 78

Query: 361 LSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-SRLVNLNKFSVFTNNF 418
             L L  N L  ++P  +   +  L    +NTNQL   LP+ +  +L  L    ++ N  
Sbjct: 79  TYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL 136

Query: 419 SGSIP-GDFGKFSPSLINVSFSNN 441
             S+P G F + + SL  +   +N
Sbjct: 137 K-SVPDGVFDRLT-SLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 8/132 (6%)

Query: 144 EYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTG 203
            YL+L  N  +   +    +L++LT L L  NK      G    ++++  + L  N    
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 204 QIPSSLGQLKNLQHLDLRMNALNSTIPP----ELGLCTNLSFLALAMNQLSGGLPLSLSN 259
                  +L  L+ L L  N L S +P     +L   T L  L L  NQL          
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKL---TQLKDLRLYQNQLKSVPDGVFDR 146

Query: 260 LSRLNELGLSDN 271
           L+ L  + L DN
Sbjct: 147 LTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 44/185 (23%), Positives = 63/185 (34%), Gaps = 53/185 (28%)

Query: 186 GLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALA 245
           G+ +    ++L  NS          +L +L  L L  N L S                  
Sbjct: 25  GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS------------------ 66

Query: 246 MNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPE 305
              L  G+   L++   L  L LS N               +L+SL           P  
Sbjct: 67  ---LPNGVFNKLTS---LTYLNLSTN---------------QLQSL-----------PNG 94

Query: 306 I-GLLTKLQYLFLYRNHFSGPIPSEI-GKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSL 363
           +   LT+L+ L L  N     +P  +  KLT L+ L L  NQL          LT+L  +
Sbjct: 95  VFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153

Query: 364 QLFFN 368
            L  N
Sbjct: 154 WLHDN 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 33/127 (25%), Positives = 48/127 (37%), Gaps = 9/127 (7%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           LD   +N  G I        NL FL L N     S+ + +  L +L+ L +  N + G  
Sbjct: 31  LDNCKSND-GKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGL 87

Query: 61  PFQLSNLRKVRYLDLGGNFLETP-DWSKFSNMPSLTHLSLCYNELTLEFPSF----ILTC 115
                 L  + +L+L GN L+          +  L  L L   E+T     +        
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLL 146

Query: 116 RNLTYLD 122
             LTYLD
Sbjct: 147 PQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.3 bits (123), Expect = 7e-08
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 2/88 (2%)

Query: 64  LSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDL 123
            +    + +L L    L     S    +P L  L L  N +            NLT+L+L
Sbjct: 45  TAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102

Query: 124 SLNKLSGLIPERLFTNLGKLEYLNLTDN 151
           S NKL  +        L  L+ L+L + 
Sbjct: 103 SGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 36/118 (30%), Positives = 50/118 (42%), Gaps = 9/118 (7%)

Query: 255 LSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSF--MGNIPPEIGLLTKL 312
           L     + + EL L +   +      L   +  LE L + N     + N+P     L KL
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPK----LPKL 73

Query: 313 QYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLS--GTIPPTLWNLTNLLSLQLFFN 368
           + L L  N   G +     KL +L  L+LSGN+L    T+ P L  L  L SL LF  
Sbjct: 74  KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 2/105 (1%)

Query: 192 QLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSG 251
           +LV     S  G+I     +  NL+ L L    L S     L     L  L L+ N++ G
Sbjct: 28  ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELSENRIFG 85

Query: 252 GLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNN 296
           GL +    L  L  L LS N L    +   +     L+SL + N 
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 27/135 (20%)

Query: 90  NMPSLTHLSLCYNELT-LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNL 148
              ++  L L   +    +         NL +L L    L  +        L KL+ L L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN---LPKLPKLKKLEL 78

Query: 149 TDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSS 208
           ++N+  G L     KL NLT L L+ NK        +  +S ++                
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNK--------LKDISTLE---------------P 115

Query: 209 LGQLKNLQHLDLRMN 223
           L +L+ L+ LDL   
Sbjct: 116 LKKLECLKSLDLFNC 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 7/126 (5%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           LD S +N  G +         L FL   N     SI + +  L++L+ L + +N ++G  
Sbjct: 24  LDNSRSNE-GKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGL 80

Query: 61  PFQLSNLRKVRYLDLGGNFLETP-DWSKFSNMPSLTHLSLCYNELTLEF---PSFILTCR 116
                    + +L+L GN ++          + +L  L L   E+T       +      
Sbjct: 81  EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP 140

Query: 117 NLTYLD 122
            LTYLD
Sbjct: 141 QLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 54.7 bits (132), Expect = 4e-09
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 3/111 (2%)

Query: 42  DLSELQYLSVYNNSLN-GAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLC 100
             S+++ L + N+  N G          ++ +L      L     +    +  L  L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELS 72

Query: 101 YNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDN 151
            N ++         C NLT+L+LS NK+  L        L  L+ L+L + 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 9/118 (7%)

Query: 255 LSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSF--MGNIPPEIGLLTKL 312
           L     S + EL L ++  +      L   + ELE L   N     + N+P     L KL
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK----LNKL 66

Query: 313 QYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLS--GTIPPTLWNLTNLLSLQLFFN 368
           + L L  N  SG +     K  +L  L+LSGN++    TI P L  L NL SL LF  
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP-LKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 3/109 (2%)

Query: 189 SNIQLVELFNNSFT-GQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMN 247
           S+++ + L N+    G++     + + L+ L      L S     L     L  L L+ N
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDN 74

Query: 248 QLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNN 296
           ++SGGL +       L  L LS N +    +   +     L+SL + N 
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.9 bits (91), Expect = 9e-04
 Identities = 32/132 (24%), Positives = 47/132 (35%), Gaps = 27/132 (20%)

Query: 93  SLTHLSLCYNELT-LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDN 151
            +  L L  +     +          L +L      L+ +        L KL+ L L+DN
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN---LPKLNKLKKLELSDN 74

Query: 152 QFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQ 211
           +  G L     K  NLT L L+ NK        I  +S I+                L +
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNK--------IKDLSTIE---------------PLKK 111

Query: 212 LKNLQHLDLRMN 223
           L+NL+ LDL   
Sbjct: 112 LENLKSLDLFNC 123

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 119 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKF 177
           T L L+ N+L  +  + LF  L  L  L L  NQ    + PN     S++  L+L  NK 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90

Query: 178 SGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN 226
                     +  ++ + L++N  +  +P S   L +L  L+L  N  N
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 12/121 (9%)

Query: 36  IPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLT 95
           IP    +L  L    +   S +G F      L  +  L+L  N L   + + F     + 
Sbjct: 27  IPLHTTEL-LLNDNELGRISSDGLF----GRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81

Query: 96  HLSLCYNELTLEFPSFI---LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQ 152
            L L  N++  E  + +   L    L  L+L  N++S  +    F +L  L  LNL  N 
Sbjct: 82  ELQLGENKIK-EISNKMFLGLH--QLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNP 137

Query: 153 F 153
           F
Sbjct: 138 F 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 265 ELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNHFS 323
           EL L+DN L    S  L G    L  L+++ N  +  I P      + +Q L L  N   
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENKIK 91

Query: 324 GPIPSEI-GKLTSLEKLDLSGNQLSGTIPP-TLWNLTNLLSLQLFFN 368
             I +++   L  L+ L+L  NQ+S  + P +  +L +L SL L  N
Sbjct: 92  E-ISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.5 bits (116), Expect = 9e-07
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 1   LDLSHNNISGPIPPAI-GTLSNLTFLDLNNNLFEGSIPSEMGD-LSELQYLSVYNNSL-- 56
           L L+ N +       + G L +L  L+L  N     I     +  S +Q L +  N +  
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKE 92

Query: 57  --NGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYN 102
             N  F      L +++ L+L  N +       F ++ SLT L+L  N
Sbjct: 93  ISNKMF----LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 302 IPPEIGLLTKLQYLFLYRNHFSGPIPSEI-GKLTSLEKLDLSGNQLSGTIPPTLW-NLTN 359
           IP +I L T    L L  N         + G+L  L KL+L  NQL+  I P  +   ++
Sbjct: 23  IPRDIPLHT--TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASH 79

Query: 360 LLSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQL 394
           +  LQL  N +   I  ++   +  L   ++  NQ+
Sbjct: 80  IQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQI 114

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 30/126 (23%), Positives = 45/126 (35%), Gaps = 7/126 (5%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           LDL    I   I     TL     +D ++N     +      L  L+ L V NN +    
Sbjct: 24  LDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIG 80

Query: 61  PFQLSNLRKVRYLDLGGNFLETP-DWSKFSNMPSLTHLSLCYNELTLEF---PSFILTCR 116
                 L  +  L L  N L    D    +++ SLT+L +  N +T +       I    
Sbjct: 81  EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP 140

Query: 117 NLTYLD 122
            +  LD
Sbjct: 141 QVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 5/127 (3%)

Query: 25  LDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPD 84
           + L   L E +  ++  +    + L +    +        + L +   +D   N +   D
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLD 58

Query: 85  WSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLE 144
              F  +  L  L +  N +            +LT L L+ N L  L       +L  L 
Sbjct: 59  --GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 145 YLNLTDN 151
           YL +  N
Sbjct: 117 YLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 9e-07
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 11/117 (9%)

Query: 256 SLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNN--SFMGNIPPEIGLLTKLQ 313
             +N  R  EL L    +   I  NL     + +++   +N    +   P     L +L+
Sbjct: 14  QYTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKLDGFPL----LRRLK 67

Query: 314 YLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLS--GTIPPTLWNLTNLLSLQLFFN 368
            L +  N            L  L +L L+ N L   G + P L +L +L  L +  N
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 27/138 (19%)

Query: 86  SKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY 145
           ++++N      L L   ++     +   T      +D S N++  L     F  L +L+ 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKT 68

Query: 146 LNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQI 205
           L + +N+           L +LT L L  N               +  ++          
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSL-----------VELGDLD---------- 107

Query: 206 PSSLGQLKNLQHLDLRMN 223
              L  LK+L +L +  N
Sbjct: 108 --PLASLKSLTYLCILRN 123

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 71  RYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFI---LTCRNLTYLDLSLNK 127
             L+L  N L++     F  +  LT LSL  N++    P  +   LT   LT L L  NK
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLT--KLTILYLHENK 87

Query: 128 LSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATN 175
           L  L P  +F  L +L+ L L  NQ +        +L++L  + L TN
Sbjct: 88  LQSL-PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 51.5 bits (124), Expect = 8e-08
 Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 3/106 (2%)

Query: 119 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKF 177
           T L+L  NKL  L P  +F  L +L  L+L+ NQ Q  L   V  KL+ LT+L L  NK 
Sbjct: 31  TRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKL 88

Query: 178 SGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 223
                G    ++ ++ + L  N           +L +LQ + L  N
Sbjct: 89  QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 17/125 (13%)

Query: 35  SIPSEMGDLSELQYLSVYNNSL----NGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSN 90
           S+P+  G  S    L + +N L    +G F  +L+ L     L L  N +++     F  
Sbjct: 21  SVPT--GIPSSATRLELESNKLQSLPHGVFD-KLTQLT---KLSLSQNQIQSLPDGVFDK 74

Query: 91  MPSLTHLSLCYNELTLEFPSFI---LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLN 147
           +  LT L L  N+L    P+ +   LT   L  L L  N+L   +P+ +F  L  L+ + 
Sbjct: 75  LTKLTILYLHENKLQ-SLPNGVFDKLT--QLKELALDTNQLKS-VPDGIFDRLTSLQKIW 130

Query: 148 LTDNQ 152
           L  N 
Sbjct: 131 LHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.4 bits (116), Expect = 9e-07
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 10/107 (9%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGD-LSELQYLSVYNNSL--- 56
           L+L  N +          L+ LT L L+ N  + S+P  + D L++L  L ++ N L   
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSL 91

Query: 57  -NGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYN 102
            NG F      L +++ L L  N L++     F  + SL  + L  N
Sbjct: 92  PNGVF----DKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 10/118 (8%)

Query: 301 NIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWN-LTN 359
            IP      +    L L  N           KLT L KL LS NQ+  ++P  +++ LT 
Sbjct: 25  GIP------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTK 77

Query: 360 LLSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTN 416
           L  L L  N L  ++P  +   +  L    ++TNQL         RL +L K  + TN
Sbjct: 78  LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 63/316 (19%), Positives = 111/316 (35%), Gaps = 68/316 (21%)

Query: 64  LSNLRKVRYLDLGGNFLETPDWSKF-----SNMPSLTHLSLCYNELTLE-----FPSFIL 113
            S    V  LDL  N L +    +      +   S+T L+L  N L  +           
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 114 TCRNLTYLDLSLNKLSG----LIPERLFTNLGKLEYLNLTDNQFQGK----LSPNVSKL- 164
              N+T L+LS N LS      + + L      +  L+L  N F  K         S L 
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 165 SNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA 224
           +++T L L  N         +G+ S+ +L+++                 N+  L+LR N 
Sbjct: 138 ASITSLNLRGND--------LGIKSSDELIQILAAIPA-----------NVNSLNLRGNN 178

Query: 225 LNSTIPPELG-----LCTNLSFLALAMNQL--SGGLPLS---LSNLSRLNELGLSDNFLS 274
           L S    EL      +  +++ L L+ N L       L+    S  + +  L L  N L 
Sbjct: 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238

Query: 275 GEIS---ANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIG 331
           G        L  +   L+++ +  +    N+  E     + + L            +   
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIV-KNMSKE-----QCKALG-----------AAFP 281

Query: 332 KLTSLEKLDLSGNQLS 347
            +  +  +D +G ++ 
Sbjct: 282 NIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 56/332 (16%), Positives = 110/332 (33%), Gaps = 63/332 (18%)

Query: 1   LDLSHNNISGPIPPAIG-----TLSNLTFLDLNNNLFEGSIPSEMGDL-----SELQYLS 50
           LDLS NN+       +      T +++T L+L+ N        E+  +     + +  L+
Sbjct: 27  LDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN 86

Query: 51  VYNNSLNGAFPFQLSNL-----RKVRYLDLGGNFLETPDWSKFSNM-----PSLTHLSLC 100
           +  N L+     +L          +  LDLG N   +   S+F         S+T L+L 
Sbjct: 87  LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR 146

Query: 101 YNELTLE-----FPSFILTCRNLTYLDLSLNKLS----GLIPERLFTNLGKLEYLNLTDN 151
            N+L ++              N+  L+L  N L+      + + L +    +  L+L+ N
Sbjct: 147 GNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206

Query: 152 QFQGKLSPNVSKL-----SNLTVLRLATNKFSGPIPGDIGLM----SNIQLVELFNNSFT 202
               K    ++ +     +++  L L  N   GP   ++ L+     ++Q V L  +   
Sbjct: 207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266

Query: 203 GQ-------IPSSLGQLKNLQHLDLRMNAL--------------NSTIPPELGLCTNLSF 241
                    + ++   ++ +  +D     +               S       L      
Sbjct: 267 NMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLI 326

Query: 242 LALAMNQLSGGLPLSLSNLSRLNELGLSDNFL 273
            A             L+    L E   +   L
Sbjct: 327 FAQKHQTNI----EDLNIPDELRESIQTCKPL 354

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.1 bits (137), Expect = 6e-09
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 4/97 (4%)

Query: 301 NIPPEIGLLTKLQYLFLYRNHFSGPIPSE-IGKLTSLEKLDLSGNQLSGTIPP-TLWNLT 358
           +    +     L  L++        +    +  L  L  L +  + L   + P       
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 359 NLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLH 395
            L  L L FN L  ++  +     SL    ++ N LH
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 4e-08
 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 3/104 (2%)

Query: 100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSP 159
           C  +  L+    +    NLT L +   +    +  R    LG+L  L +  +  +  ++P
Sbjct: 15  CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAP 73

Query: 160 NV-SKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFT 202
           +       L+ L L+ N     +        ++Q + L  N   
Sbjct: 74  DAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 6e-07
 Identities = 23/117 (19%), Positives = 35/117 (29%), Gaps = 24/117 (20%)

Query: 12  IPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVR 71
               +    NLT L + N      +                           L  L ++R
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRD-----------------------LRGLGELR 59

Query: 72  YLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKL 128
            L +  + L       F   P L+ L+L +N L        +   +L  L LS N L
Sbjct: 60  NLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 19/151 (12%), Positives = 36/151 (23%), Gaps = 51/151 (33%)

Query: 27  LNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWS 86
             +          +     L  L + N                          L+  +  
Sbjct: 16  TRDGAL--DSLHHLPGAENLTELYIENQ-----------------------QHLQHLELR 50

Query: 87  KFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYL 146
               +  L +L++  + L                           +    F    +L  L
Sbjct: 51  DLRGLGELRNLTIVKSGLR-------------------------FVAPDAFHFTPRLSRL 85

Query: 147 NLTDNQFQGKLSPNVSKLSNLTVLRLATNKF 177
           NL+ N  +  LS    +  +L  L L+ N  
Sbjct: 86  NLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 5e-06
 Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 26/107 (24%)

Query: 1   LDLSHNNISGPIPP-AIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGA 59
           L + +      +    +  L  L  L +  +     +                      A
Sbjct: 36  LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVA-------------------PDA 75

Query: 60  FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTL 106
           F        ++  L+L  N LE+  W     + SL  L L  N L  
Sbjct: 76  F----HFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 9e-06
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 205 IPSSLGQLKNLQHLDLRMNALNSTIPPE-LGLCTNLSFLALAMNQLSGGLPLSLSNLSRL 263
               L   +NL  L +        +    L     L  L +  + L    P +     RL
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 264 NELGLSDNFLSGEISANLIGNWTELESLQIQNNSF 298
           + L LS N L   +S   +   + L+ L +  N  
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 9e-06
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 254 PLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKL 312
              L     L EL + +      +    +    EL +L I  +     + P+      +L
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRL 82

Query: 313 QYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQL 346
             L L  N     +  +  +  SL++L LSGN L
Sbjct: 83  SRLNLSFNALES-LSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 2/92 (2%)

Query: 159 PNVSKLSNLTVLRLATNKFSGPIP-GDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQH 217
            ++    NLT L +   +    +   D+  +  ++ + +  +      P +      L  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 218 LDLRMNALNSTIPPELGLCTNLSFLALAMNQL 249
           L+L  NAL  ++  +     +L  L L+ N L
Sbjct: 85  LNLSFNAL-ESLSWKTVQGLSLQELVLSGNPL 115

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 61/376 (16%), Positives = 109/376 (28%), Gaps = 43/376 (11%)

Query: 1   LDLSHNNISGPIPPAIGTLS----NLTFLDLN----NNLFEGSIPSEMGDLSELQYLSVY 52
           L +  ++ S      +  L+    +L  L+        +    + +   +   L  + V 
Sbjct: 169 LLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228

Query: 53  NNSL--NGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPS 110
           +  +     F    +NL +     L  +      +        L  L L Y     E P 
Sbjct: 229 DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPI 287

Query: 111 FILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVL 170
                  +  LDL    L       L      LE L   +      L         L  L
Sbjct: 288 LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347

Query: 171 RLA------TNKFSGPIPGDIGLMS------NIQLVELFNNSFTGQIPSSLGQ-LKNLQH 217
           R+         +    +    GL++       ++ + ++ +  T +   S+G  LKNL  
Sbjct: 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCD 407

Query: 218 LDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDN--FLSG 275
             L            L     ++ L      L  G+   L    +L           L+ 
Sbjct: 408 FRLV----------LLDREERITDLP-----LDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452

Query: 276 EISANLIGNWTELESLQIQNNSFMGNIPPEIGL-LTKLQYLFLYRNHFSGP-IPSEIGKL 333
              + +      +  + +           E       LQ L +    FS   I + + KL
Sbjct: 453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL 512

Query: 334 TSLEKLDLSGNQLSGT 349
            SL  L + G + S T
Sbjct: 513 PSLRYLWVQGYRASMT 528

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 76/507 (14%), Positives = 135/507 (26%), Gaps = 99/507 (19%)

Query: 113 LTCR------NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLT---DNQFQGKLSPNVSK 163
           L CR      + T   +++       P+RL      L  L L           +  N   
Sbjct: 39  LVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGG 98

Query: 164 LSNLTVLRLATN-------KFSGPIPGDIGL-------MSNIQLVELFN-NSFTGQIPSS 208
                V  ++ N        F   I  D+ L         +++ ++L   + FT     S
Sbjct: 99  YVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLS 158

Query: 209 LGQ-LKNLQHLDLRMNALNSTIPPELG----LCTNLSFLALAMNQLSG----GLPLSLSN 259
           +    + ++ L +  ++ +      L       T+L  L   M + +      L     N
Sbjct: 159 IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218

Query: 260 LSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYR 319
              L  + + D  +   +          LE     + +    +P +   L   + L    
Sbjct: 219 CRSLVSVKVGDFEILELVG--FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG 276

Query: 320 NHFSGP--IPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPE 377
             + GP  +P        + KLDL    L          +    +L++        I   
Sbjct: 277 LSYMGPNEMPILFPFAAQIRKLDLLYALLET--EDHCTLIQKCPNLEVL--ETRNVI--- 329

Query: 378 IGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVS 437
                 L        QL   L   I R  +           S             LI ++
Sbjct: 330 --GDRGLEVLAQYCKQLK-RL--RIERGADEQGMEDEEGLVS----------QRGLIALA 374

Query: 438 FSNNSFSGELPYELCSGFALEELTVNGNNFT-GSLPACMRNCSNLNRVRFDGNQFTGNIT 496
                       + C    LE + V  ++ T  SL +      NL   R         IT
Sbjct: 375 ------------QGCQE--LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420

Query: 497 RAFGVH---------PRLDFIRLSGN---------HFIGEISPDWGECRNLSNLQLDRNK 538
                +          +L                  +IG+         N+  + L    
Sbjct: 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY------SPNVRWMLLGYVG 474

Query: 539 IS-GGIPAELGNLTRLGVLSLDSNELT 564
            S  G+         L  L +     +
Sbjct: 475 ESDEGLMEFSRGCPNLQKLEMRGCCFS 501

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 40/181 (22%), Positives = 60/181 (33%), Gaps = 42/181 (23%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L      I   +   + TL     L L+ N  E                      ++   
Sbjct: 30  LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE---------------------KISS-- 65

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELT-LEFPSFILTCRNLT 119
              LS +  +R L LG N ++  + +  +   +L  L + YN++  L     I    NL 
Sbjct: 66  ---LSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASLS---GIEKLVNLR 118

Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPN----------VSKLSNLTV 169
            L +S NK++          L KLE L L  N        N          V +L NL  
Sbjct: 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178

Query: 170 L 170
           L
Sbjct: 179 L 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 43/202 (21%), Positives = 71/202 (35%), Gaps = 58/202 (28%)

Query: 146 LNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQI 205
           L+      + K+   +S L     L L+TN               I+ +           
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNN--------------IEKIS---------- 64

Query: 206 PSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSR--- 262
             SL  ++NL+ L L  N +   I     +   L  L ++ NQ++     SLS + +   
Sbjct: 65  --SLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIA-----SLSGIEKLVN 116

Query: 263 LNELGLSDNFLSGEISANLIGNWTELESLQIQNN----SFMGNIPPEIGLLTKLQYLFLY 318
           L  L +S+N          I NW E++ L   +        GN  P      +      Y
Sbjct: 117 LRVLYMSNNK---------ITNWGEIDKLAALDKLEDLLLAGN--PLYNDYKENNATSEY 165

Query: 319 RNHFSGPIPSEIGKLTSLEKLD 340
           R          + +L +L+KLD
Sbjct: 166 RIEV-------VKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 36/148 (24%), Positives = 53/148 (35%), Gaps = 29/148 (19%)

Query: 205 IPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLN 264
           + ++L  LK  +HL L  N +   I   L    NL  L+L  N +     L  +    L 
Sbjct: 40  MDATLSTLKACKHLALSTNNI-EKISS-LSGMENLRILSLGRNLIKKIENLD-AVADTLE 96

Query: 265 ELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSG 324
           EL +S N ++  +S   I     L  L + NN        +I    ++  L         
Sbjct: 97  ELWISYNQIA-SLSG--IEKLVNLRVLYMSNN--------KITNWGEIDKL--------- 136

Query: 325 PIPSEIGKLTSLEKLDLSGNQLSGTIPP 352
                   L  LE L L+GN L      
Sbjct: 137 ------AALDKLEDLLLAGNPLYNDYKE 158

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 53.6 bits (129), Expect = 8e-08
 Identities = 51/315 (16%), Positives = 86/315 (27%), Gaps = 63/315 (20%)

Query: 64  LSNLRKVRYLDLGGNFLETPDWSKF-----SNMPSLTHLSLCYNELTLEFPSFILTC-RN 117
              L  +R L+L G  +     +       S   +L  ++L   +L       +L     
Sbjct: 68  AEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLR 127

Query: 118 LTYLDLSLNKLS----GLIPERLFTNLGKLEYLNLTDNQFQGK----LSPNVSKLSNLTV 169
              L L LN L       + + L  +  ++  L L++N         L   ++  +++T 
Sbjct: 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH 187

Query: 170 LRLATNKFSGPIPGDIG-------LMSNIQLVEL--FNNSFTGQ----IPSSLGQLKNLQ 216
           L L          GD G       L  N QL EL    N         +  +  +  +L+
Sbjct: 188 LSLLHTGL-----GDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLE 242

Query: 217 HLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGE 276
            L L  N L+S                     L           +R+         +S  
Sbjct: 243 LLHLYFNELSSE----------------GRQVLRDLGGA-AEGGARVVVSLTEGTAVSEY 285

Query: 277 ISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKL--- 333
            S  L      L S                    +L    L  +  +   P    +L   
Sbjct: 286 WSVILSEVQRNLNSWDRARVQRH----------LELLLRDLEDSRGATLNPWRKAQLLRV 335

Query: 334 -TSLEKLDLSGNQLS 347
              +  L        
Sbjct: 336 EGEVRALLEQLGSSG 350

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.0 bits (118), Expect = 1e-06
 Identities = 27/187 (14%), Positives = 57/187 (30%), Gaps = 18/187 (9%)

Query: 113 LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRL 172
                   +D    ++S +    L   L  +  LN    +    LS       NL  L +
Sbjct: 141 FEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEI 200

Query: 173 ATNKFSGPIPGDIG--LMSNIQLVELFNNSFTGQIPSSLGQL---------KNLQHLDLR 221
            +      +  DI    + N++ + L+           +             NL+ L + 
Sbjct: 201 ISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV 260

Query: 222 MNALNSTIPPELG---LCTNLSFLALAMNQLSGG----LPLSLSNLSRLNELGLSDNFLS 274
                + +        +   L  + ++   L+      L   +  +  L  + +  N+LS
Sbjct: 261 DAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

Query: 275 GEISANL 281
            E+   L
Sbjct: 321 DEMKKEL 327

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 1e-05
 Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 26/161 (16%)

Query: 1   LDLSHNNISGPIPPAIGT--LSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNG 58
           L++    +   +   I    L NL  L L   + +     +M     L            
Sbjct: 198 LEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL------------ 245

Query: 59  AFPFQLSNLRKVRYLDLGGNFLET---PDWSKFSNMPSLTHLSLCYNELT----LEFPSF 111
              F       +++L +     +      + +   +P L  + +    LT          
Sbjct: 246 ---FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH 302

Query: 112 ILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQ 152
           +   ++L ++++  N LS  + + L  +L     ++++D+Q
Sbjct: 303 VDKIKHLKFINMKYNYLSDEMKKELQKSLPMK--IDVSDSQ 341

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 1e-05
 Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 23/143 (16%)

Query: 19  LSNLTFLDLNNNLFEGSIPSEMG--DLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLG 76
             NL  L++ +     S+  ++   DL  L+ L +Y    +  F   ++  R +      
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL------ 245

Query: 77  GNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCR---NLTYLDLSLNKLSGLIP 133
                          P+L  L +   E         L       L  +D+S   L+    
Sbjct: 246 ---------FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296

Query: 134 ERLFTNLG---KLEYLNLTDNQF 153
             L  ++     L+++N+  N  
Sbjct: 297 RLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 6e-05
 Identities = 27/181 (14%), Positives = 57/181 (31%), Gaps = 23/181 (12%)

Query: 203 GQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGG-----LPLSL 257
             +   L  +  L +L ++     S          NL  L +    L        L   L
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPR---PNLKSLEIISGGLPDSVVEDILGSDL 218

Query: 258 SNLSRLNELGLSDNFLSGEISANLI------GNWTELESLQIQNNSFMGNIPPEIG---L 308
            NL +L  L +       +   N+         +  L+ L I +      +        +
Sbjct: 219 PNLEKL-VLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277

Query: 309 LTKLQYLFLYRNHFSG----PIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWN-LTNLLSL 363
           L +L+ + +     +      +   + K+  L+ +++  N LS  +   L   L   + +
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDV 337

Query: 364 Q 364
            
Sbjct: 338 S 338

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 40.7 bits (94), Expect = 9e-04
 Identities = 17/179 (9%), Positives = 47/179 (26%), Gaps = 18/179 (10%)

Query: 404 RLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVN 463
             +            S     D      ++  ++      +  L         L+ L + 
Sbjct: 142 EGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEII 201

Query: 464 GNNFTGSLPA--CMRNCSNLNRVR-------FDGNQFTGNITRAF--GVHPRLDFIRLSG 512
                 S+       +  NL ++        +  +         F     P L ++ +  
Sbjct: 202 SGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD 261

Query: 513 NHFIGEISPDWGECRNLSNLQ---LDRNKISGG----IPAELGNLTRLGVLSLDSNELT 564
                 +   + E   L  L+   +    ++      +   +  +  L  +++  N L+
Sbjct: 262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 93  SLTHLSLCYNELT-LEFPSF-ILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTD 150
           +   L L  N++T LE   F  LT   LT LDL  N+L+ L P  +F  L +L  L+L D
Sbjct: 31  TTQVLYLYDNQITKLEPGVFDRLT--QLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLND 87

Query: 151 NQFQGKLSPNVSKLSNLTVLRLATN 175
           NQ +         L +LT + L  N
Sbjct: 88  NQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 71  RYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFI---LTCRNLTYLDLSLNK 127
           + L L  N +   +   F  +  LT L L  N+LT   P+ +   LT   LT L L+ N+
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLT--QLTQLSLNDNQ 89

Query: 128 LSGLIPERLFTNLGKLEYLNLTDN 151
           L   IP   F NL  L ++ L +N
Sbjct: 90  LKS-IPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 10/83 (12%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGD-LSELQYLSVYNNSL--- 56
           L L  N I+   P     L+ LT LDL+NN     +P+ + D L++L  LS+ +N L   
Sbjct: 35  LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSI 93

Query: 57  -NGAFPFQLSNLRKVRYLDLGGN 78
             GAF     NL+ + ++ L  N
Sbjct: 94  PRGAF----DNLKSLTHIWLLNN 112

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 93  SLTHLSLCYNELT-LEFPSF-ILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTD 150
               L L  N++T LE   F  L   NL  L  + NKL+ + P  +F  L +L  L+L D
Sbjct: 34  DKQRLWLNNNQITKLEPGVFDHLV--NLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLND 90

Query: 151 NQFQGKLSPNVSKLSNLTVLRLATN 175
           N  +         L +LT + L  N
Sbjct: 91  NHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 71  RYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFI---LTCRNLTYLDLSLNK 127
           + L L  N +   +   F ++ +L  L    N+LT   P+ +   LT   LT LDL+ N 
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLT--QLTQLDLNDNH 92

Query: 128 LSGLIPERLFTNLGKLEYLNLTDN 151
           L   IP   F NL  L ++ L +N
Sbjct: 93  LKS-IPRGAFDNLKSLTHIYLYNN 115

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 7e-06
 Identities = 71/441 (16%), Positives = 126/441 (28%), Gaps = 123/441 (27%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEG-----SIPSEMGD----LSELQYLSV 51
           L+L + N    +   +  L  L    ++ N         +I   +      L  L     
Sbjct: 187 LNLKNCNSPETV---LEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 52  YNNSL----NGAFPFQLSNLRKVRYLDLGGNFL-ETPDWSKFSNMPSLTHLSLCYNELTL 106
           Y N L    N      + N +     +L    L  T        + + T        ++L
Sbjct: 243 YENCLLVLLN------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT-----TTHISL 291

Query: 107 EFPSFILTCRN-----LTYLDLSLNKLS-----------GLIPERLFTNLGKLE-YLNLT 149
           +  S  LT        L YLD     L             +I E +   L   + + ++ 
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351

Query: 150 DNQFQGKLSPNVSKLS---------NLTVLRLATNKFSGPIPGDI--------------- 185
            ++    +  +++ L           L+V   + +     IP  +               
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-----IPTILLSLIWFDVIKSDVMV 406

Query: 186 --GLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTI----PPELGLCTNL 239
               +    LVE      T  IPS    L+    L+    AL+ +I           ++ 
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPS--IYLELKVKLE-NEYALHRSIVDHYNIPKTFDSD- 462

Query: 240 SFLALAMNQLSG------GLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQI 293
               L    L        G  L          L     FL      +    +  LE  +I
Sbjct: 463 ---DLIPPYLDQYFYSHIGHHLKNIEHPERMTL-FRMVFL------DF--RF--LEQ-KI 507

Query: 294 QNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPT 353
           +++S   N      +L  LQ L  Y+ +     P     + ++        +        
Sbjct: 508 RHDSTAWNASG--SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE-------- 557

Query: 354 LWNL-----TNLLSLQLFFNN 369
             NL     T+LL + L   +
Sbjct: 558 --NLICSKYTDLLRIALMAED 576

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 8e-04
 Identities = 58/409 (14%), Positives = 121/409 (29%), Gaps = 136/409 (33%)

Query: 94  LTHLSLCYNELTLEF-PSFI--LTCRNLTYLDLSLNKLSG-----LIPE--------RLF 137
                  Y ++   F  +F+    C+++   D+  + LS      +I          RLF
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDV--QDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 138 TNLGKLEYLNLTDNQF-QGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVEL 196
             L  L        +F +  L  N   L  ++ ++    +     P  +  M   Q   L
Sbjct: 69  WTL--LSKQEEMVQKFVEEVLRINYKFL--MSPIKTEQRQ-----PSMMTRMYIEQRDRL 119

Query: 197 FNNS--FTGQIPSSLGQLKNLQHLDLRMNALNSTIP-PELGLC-------TNLSFLALAM 246
           +N++  F      ++ +L+   +L LR  AL    P   + +        T ++      
Sbjct: 120 YNDNQVFA---KYNVSRLQ--PYLKLR-QALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 247 NQLSGGLP-----LSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGN 301
            ++   +      L+L N +    +      L  E+   L     +++      +    N
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETV------L--EMLQKL---LYQIDPNWTSRSDHSSN 222

Query: 302 IPPEIGLL-TKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNL 360
           I   I  +  +L+ L   + +              L  L              + N    
Sbjct: 223 IKLRIHSIQAELRRLLKSKPY-----------ENCLLVLL------------NVQN---- 255

Query: 361 LSLQLFFNNLSGTIPPEIGSMASLVAFDVN------------TNQLHGELPENISRLVNL 408
                           +        AF+++            T+ L      +IS L + 
Sbjct: 256 ---------------AKA-----WNAFNLSCKILLTTRFKQVTDFLSAATTTHIS-LDHH 294

Query: 409 NKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFAL 457
           +     T +   S+     K+    ++          +LP E+ +    
Sbjct: 295 SM--TLTPDEVKSL---LLKY----LDCRPQ------DLPREVLTTNPR 328

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 48/271 (17%), Positives = 86/271 (31%), Gaps = 30/271 (11%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLN-GA 59
           LDL+  N+   +   + +   +       +  +  +         +Q++ + N+ +    
Sbjct: 52  LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 109

Query: 60  FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCY-NELTLEFPSFILT-CRN 117
               LS   K++ L L G  L  P  +  +   +L  L+L   +  +      +L+ C  
Sbjct: 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169

Query: 118 LTYLDLS--LNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATN 175
           L  L+LS   +     +   +      +  LNL+              L    +  L   
Sbjct: 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG---------YRKNLQKSDLSTLVRR 220

Query: 176 KFSGPIPGDIGLMSNIQLVEL-FNNSFTGQIPSSLGQLKNLQHLDL-RMNALNSTIPPEL 233
                         N+  ++L  +            QL  LQHL L R   +      EL
Sbjct: 221 ------------CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 268

Query: 234 GLCTNLSFLALAMNQLSGGLPLSLSNLSRLN 264
           G    L  L +      G L L    L  L 
Sbjct: 269 GEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 299

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 47/281 (16%), Positives = 92/281 (32%), Gaps = 44/281 (15%)

Query: 82  TPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLG 141
            PD +       +       + +         +   + ++DLS + +       + +   
Sbjct: 60  HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLHGILSQCS 118

Query: 142 KLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSF 201
           KL+ L+L   +    +   ++K SNL  L L+               S   L  L ++  
Sbjct: 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG----------FSEFALQTLLSS-- 166

Query: 202 TGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLS 261
                        L  L+L               C + +   + +      +      ++
Sbjct: 167 ----------CSRLDELNLSW-------------CFDFTEKHVQV-----AVAHVSETIT 198

Query: 262 RLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIP-PEIGLLTKLQYLFLYR- 319
           +LN  G   N L     + L+     L  L + ++  + N    E   L  LQ+L L R 
Sbjct: 199 QLNLSGYRKN-LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257

Query: 320 NHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNL 360
                    E+G++ +L+ L + G    GT+      L +L
Sbjct: 258 YDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL 298

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	569
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.58
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.57
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.45
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.41
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.37
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.94
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.91
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.77
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.61
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.61
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.57
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.3
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.24
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.72
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.67
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.02
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.27
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	91.04
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	84.74

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.3e-67  Score=560.89  Aligned_cols=547  Identities=34%  Similarity=0.526  Sum_probs=403.5

Q ss_pred             cCccCCCCCCEEeCCCCcCcccCCc--cccCCCCCcEEEccCCccccCcchhc-cCCCCCCEEECCCCCCCCCCCcc---
Q 047977           14 PAIGTLSNLTFLDLNNNLFEGSIPS--EMGDLSELQYLSVYNNSLNGAFPFQL-SNLRKVRYLDLGGNFLETPDWSK---   87 (569)
Q Consensus        14 ~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~---   87 (569)
                      +.|.++++|++|++++|.+.+.+|.  .+.++++|++|++++|.+.+..|..+ .++++|++|++++|.+....+..   
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  173 (768)
T 3rgz_A           94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL  173 (768)
T ss_dssp             CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred             hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence            4566666666666666666555555  56666666666666666554444433 55666666666666555444333   


Q ss_pred             CCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCC
Q 047977           88 FSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNL  167 (569)
Q Consensus        88 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  167 (569)
                      +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+.++.  +..+++|++|++++|.+.+..+..+..+++|
T Consensus       174 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  249 (768)
T 3rgz_A          174 SDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTEL  249 (768)
T ss_dssp             TTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSC
T ss_pred             hccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCC
Confidence            4556666666666666553332  25566666666666666654444  4666666666666666665555566666666


Q ss_pred             CEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCC-CCCCEEEcccCCCCcCCCcCCcCCCCCCEEEccc
Q 047977          168 TVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQL-KNLQHLDLRMNALNSTIPPELGLCTNLSFLALAM  246 (569)
Q Consensus       168 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~  246 (569)
                      ++|++++|.+.+..+..  .+++|++|++++|.+.+.+|..+... ++|++|++++|.+....+..++.+++|+++++++
T Consensus       250 ~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  327 (768)
T 3rgz_A          250 KLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS  327 (768)
T ss_dssp             CEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCS
T ss_pred             CEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCC
Confidence            66666666665444332  56666666666666666666655553 6677777777766666666667777777777777


Q ss_pred             ccceeccCcc-CcCCCCCCEEeCcCCcCccccCccccCCCC-CCcEEEccCCcceeeCCccccC--CCCCcEEecccccc
Q 047977          247 NQLSGGLPLS-LSNLSRLNELGLSDNFLSGEISANLIGNWT-ELESLQIQNNSFMGNIPPEIGL--LTKLQYLFLYRNHF  322 (569)
Q Consensus       247 ~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~  322 (569)
                      |.+.+..+.. +..+++|+.|++++|.+.+.++.. +..++ +|+.|++++|.+.+..+..+..  +++|++|++++|.+
T Consensus       328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l  406 (768)
T 3rgz_A          328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF  406 (768)
T ss_dssp             SEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred             CcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence            7666444433 666677777777777666555544 33444 6777777777776666655554  67788888888888


Q ss_pred             cccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccc
Q 047977          323 SGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENI  402 (569)
Q Consensus       323 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  402 (569)
                      ++..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+
T Consensus       407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l  486 (768)
T 3rgz_A          407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL  486 (768)
T ss_dssp             EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence            77777888888888888888888887778888888888888888888887788888888888888888888887888888


Q ss_pred             cCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCc---------
Q 047977          403 SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPA---------  473 (569)
Q Consensus       403 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------  473 (569)
                      ..+++|+.+++++|++++.+|..+..++ +|++|++++|.+.+.+|..+..+++|+.|++++|.+++.+|.         
T Consensus       487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~  565 (768)
T 3rgz_A          487 SNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI  565 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred             hcCCCCCEEEccCCccCCcCChHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchh
Confidence            8888888888888888888888888876 888888888888888888888888888888888887755553         


Q ss_pred             -------------------------------------------------------------cccCCCCCcEEEccCCccc
Q 047977          474 -------------------------------------------------------------CMRNCSNLNRVRFDGNQFT  492 (569)
Q Consensus       474 -------------------------------------------------------------~l~~~~~L~~L~l~~~~~~  492 (569)
                                                                                   .+.++++|+.||+++|.++
T Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~  645 (768)
T 3rgz_A          566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS  645 (768)
T ss_dssp             CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred             hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc
Confidence                                                                         3445678999999999999


Q ss_pred             cchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccCC
Q 047977          493 GNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKNS  568 (569)
Q Consensus       493 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  568 (569)
                      +.+|..++.+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..++.+++|++|++++|+++|++|
T Consensus       646 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred             ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1e-65  Score=550.93  Aligned_cols=560  Identities=32%  Similarity=0.469  Sum_probs=514.3

Q ss_pred             CcCCCCCCccc---CCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcch--hccCCCCCCEEEC
Q 047977            1 LDLSHNNISGP---IPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPF--QLSNLRKVRYLDL   75 (569)
Q Consensus         1 l~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l   75 (569)
                      |||+++.+.+.   .+.+|.++++|+.++++.+.+. ..+..+.++++|++|++++|.+.+.+|.  .+.++++|++|++
T Consensus        55 L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L  133 (768)
T 3rgz_A           55 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV  133 (768)
T ss_dssp             EECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEEC
T ss_pred             EECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEEC
Confidence            57889999887   7889999999999999999886 4678899999999999999999987887  8999999999999


Q ss_pred             CCCCCCCCCCccC-CCCCCCcEEEcccccccccCCcc---ccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCC
Q 047977           76 GGNFLETPDWSKF-SNMPSLTHLSLCYNELTLEFPSF---ILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDN  151 (569)
Q Consensus        76 ~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  151 (569)
                      ++|.+....+..+ ..+++|++|++++|.+.+..+..   +..+++|++|++++|.+.+..+.   ..+++|++|++++|
T Consensus       134 s~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n  210 (768)
T 3rgz_A          134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSN  210 (768)
T ss_dssp             CSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSS
T ss_pred             cCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc---ccCCcCCEEECcCC
Confidence            9998876555444 78999999999999998777666   78999999999999999876553   78999999999999


Q ss_pred             cccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCc
Q 047977          152 QFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPP  231 (569)
Q Consensus       152 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  231 (569)
                      .+.+..+. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..  .+++|++|++++|.+....+.
T Consensus       211 ~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~  287 (768)
T 3rgz_A          211 NFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPD  287 (768)
T ss_dssp             CCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCC
T ss_pred             cCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCH
Confidence            99876666 999999999999999998777888999999999999999998777764  889999999999999877777


Q ss_pred             CCcC-CCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCC
Q 047977          232 ELGL-CTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLT  310 (569)
Q Consensus       232 ~~~~-~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  310 (569)
                      .+.. +++|+++++++|.+++..+..+..+++|+.|++++|.+.+.++...+..+++|+.|++++|.+.+..|..+..++
T Consensus       288 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  367 (768)
T 3rgz_A          288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS  367 (768)
T ss_dssp             CSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHT
T ss_pred             HHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhh
Confidence            7766 499999999999999999999999999999999999998888887789999999999999999988888888877


Q ss_pred             -CCcEEecccccccccCCccccC--CCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEE
Q 047977          311 -KLQYLFLYRNHFSGPIPSEIGK--LTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAF  387 (569)
Q Consensus       311 -~L~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  387 (569)
                       +|+.|++++|.+++..+..+..  +++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus       368 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  447 (768)
T 3rgz_A          368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL  447 (768)
T ss_dssp             TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence             9999999999998877777766  8899999999999998899999999999999999999998899999999999999


Q ss_pred             EccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcc
Q 047977          388 DVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNF  467 (569)
Q Consensus       388 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  467 (569)
                      ++++|.+.+.+|..+..+++|+.+++++|.+++.+|..+..++ +|++|++++|++.+.+|..+..+++|+.|++++|++
T Consensus       448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  526 (768)
T 3rgz_A          448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT-NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF  526 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC-CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence            9999999999999999999999999999999999999999887 999999999999999999999999999999999999


Q ss_pred             eeeCCccccCCCCCcEEEccCCccccchhhhh------------------------------------------------
Q 047977          468 TGSLPACMRNCSNLNRVRFDGNQFTGNITRAF------------------------------------------------  499 (569)
Q Consensus       468 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l------------------------------------------------  499 (569)
                      .+..|..+.++++|+.|++++|.+++.+|..+                                                
T Consensus       527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  606 (768)
T 3rgz_A          527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR  606 (768)
T ss_dssp             EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred             cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence            99999999999999999999999886666443                                                


Q ss_pred             ----------------------cCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEe
Q 047977          500 ----------------------GVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLS  557 (569)
Q Consensus       500 ----------------------~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  557 (569)
                                            +.+++|+.||+++|.+++.+|..++.+++|+.|++++|++++.+|..++.+++|+.|+
T Consensus       607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld  686 (768)
T 3rgz_A          607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD  686 (768)
T ss_dssp             GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence                                  3457899999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCcCcccCC
Q 047977          558 LDSNELTGKNS  568 (569)
Q Consensus       558 l~~n~~~~~~~  568 (569)
                      +++|+++|++|
T Consensus       687 Ls~N~l~g~ip  697 (768)
T 3rgz_A          687 LSSNKLDGRIP  697 (768)
T ss_dssp             CCSSCCEECCC
T ss_pred             CCCCcccCcCC
Confidence            99999999998

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.3e-58  Score=492.29  Aligned_cols=566  Identities=21%  Similarity=0.200  Sum_probs=435.6

Q ss_pred             CcCCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCC
Q 047977            1 LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFL   80 (569)
Q Consensus         1 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~   80 (569)
                      |||++|++.++.+.+|.++++|++|++++|.+.+..+.++.++++|++|++++|.++...+.+|.++++|++|++++|.+
T Consensus        30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l  109 (680)
T 1ziw_A           30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI  109 (680)
T ss_dssp             EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred             EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCcc
Confidence            45666777666666677777777777777776666666666777777777777766644444566777777777777766


Q ss_pred             CCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhh-hhcCCCCcEEeccCCcccccCCc
Q 047977           81 ETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERL-FTNLGKLEYLNLTDNQFQGKLSP  159 (569)
Q Consensus        81 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~  159 (569)
                      ....+..|+.+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+ +..+++|++|++++|.+.+..+.
T Consensus       110 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  189 (680)
T 1ziw_A          110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG  189 (680)
T ss_dssp             CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred             CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh
Confidence            66666666667777777777776665556666667777777777776664333222 12346677777777766665566


Q ss_pred             CCCCCCCCCEEEccCCccccCCCcCc---CCCCCCcEEEcccCcceecCCccccCCCC--CCEEEcccCCCCcCCCcCCc
Q 047977          160 NVSKLSNLTVLRLATNKFSGPIPGDI---GLMSNIQLVELFNNSFTGQIPSSLGQLKN--LQHLDLRMNALNSTIPPELG  234 (569)
Q Consensus       160 ~l~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~~~  234 (569)
                      .+..+++|+.+++.++.+.......+   ...++|+.|+++++.+.+..+.++..++.  |++|++++|.+....+..++
T Consensus       190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~  269 (680)
T 1ziw_A          190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA  269 (680)
T ss_dssp             GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT
T ss_pred             hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc
Confidence            66666677777666655432111111   12467899999999888887888877654  99999999999888888899


Q ss_pred             CCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCcc--------ccCccccCCCCCCcEEEccCCcceeeCCccc
Q 047977          235 LCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSG--------EISANLIGNWTELESLQIQNNSFMGNIPPEI  306 (569)
Q Consensus       235 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  306 (569)
                      .+++|+++++++|.+....+..+..+++|+.|+++++....        .+....+..+++|+.+++++|.+.+..+..+
T Consensus       270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  349 (680)
T 1ziw_A          270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF  349 (680)
T ss_dssp             TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT
T ss_pred             CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh
Confidence            99999999999999998888889999999999998765432        2222347788999999999999987777788


Q ss_pred             cCCCCCcEEecccccccc--cCCccccC--CCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCC-ccccCC
Q 047977          307 GLLTKLQYLFLYRNHFSG--PIPSEIGK--LTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIP-PEIGSM  381 (569)
Q Consensus       307 ~~~~~L~~L~l~~~~~~~--~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~  381 (569)
                      ..+++|++|++++|.+..  .....+..  .++|+.|++++|.+....+..|..+++|++|++++|.+.+.++ ..+..+
T Consensus       350 ~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l  429 (680)
T 1ziw_A          350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL  429 (680)
T ss_dssp             TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTC
T ss_pred             ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCc
Confidence            899999999999987432  11222322  3689999999999988888889999999999999999876554 678899


Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCCEEEccCCccc--ccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcE
Q 047977          382 ASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFS--GSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEE  459 (569)
Q Consensus       382 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  459 (569)
                      ++|+++++++|.+.+..+..+..+++|+.+++++|.+.  +..|..+..++ +|+.|++++|.+.+..+..+..+++|++
T Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~  508 (680)
T 1ziw_A          430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR-NLTILDLSNNNIANINDDMLEGLEKLEI  508 (680)
T ss_dssp             TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC-CCCEEECCCCCCCcCChhhhccccccCE
Confidence            99999999999998777788889999999999999886  45677787777 9999999999998666667888999999


Q ss_pred             EEccCCcceeeCC--------ccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCE
Q 047977          460 LTVNGNNFTGSLP--------ACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSN  531 (569)
Q Consensus       460 L~l~~~~~~~~~~--------~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  531 (569)
                      |++++|+++...+        ..+.++++|++|++++|.+....+..|+.+++|++|++++|.++...+..|+.+++|+.
T Consensus       509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  588 (680)
T 1ziw_A          509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS  588 (680)
T ss_dssp             EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence            9999998874321        23788999999999999999666677999999999999999999766667899999999


Q ss_pred             EECCCCcceecCCcCcc-CCCCCCeEeCcCCcCcccC
Q 047977          532 LQLDRNKISGGIPAELG-NLTRLGVLSLDSNELTGKN  567 (569)
Q Consensus       532 L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~  567 (569)
                      |++++|++++..+..+. .+++|++|++++||+...-
T Consensus       589 L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c  625 (680)
T 1ziw_A          589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC  625 (680)
T ss_dssp             EECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred             EECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence            99999999987777777 7899999999999998753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.8e-56  Score=475.82  Aligned_cols=561  Identities=21%  Similarity=0.189  Sum_probs=479.3

Q ss_pred             cCCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCC
Q 047977            2 DLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLE   81 (569)
Q Consensus         2 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~   81 (569)
                      |.++++++. .|..+.  +++++|++++|.+.+..+.+|.++++|++|++++|.+++..|.++.++++|++|++++|.+.
T Consensus        10 ~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   86 (680)
T 1ziw_A           10 DCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS   86 (680)
T ss_dssp             ECCSSCCSS-CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC
T ss_pred             ECCCCCccc-cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC
Confidence            567788874 444444  79999999999999888888999999999999999999888899999999999999999999


Q ss_pred             CCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCC
Q 047977           82 TPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV  161 (569)
Q Consensus        82 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  161 (569)
                      ......|+.+++|++|++++|.+.+..+..++.+++|++|++++|.+++..+. .+.++++|++|++++|.+.+..+..+
T Consensus        87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~  165 (680)
T 1ziw_A           87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKSEEL  165 (680)
T ss_dssp             CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred             ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccccCHHHh
Confidence            88888899999999999999999877778899999999999999999865443 45889999999999999886555443


Q ss_pred             --CCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccc---cCCCCCCEEEcccCCCCcCCCcCCcCC
Q 047977          162 --SKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSL---GQLKNLQHLDLRMNALNSTIPPELGLC  236 (569)
Q Consensus       162 --~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~~~~~  236 (569)
                        ..+++|++|++++|.+.+..+..+..+++|+.+++.++.+.......+   ...++|++|++++|.+....+.++..+
T Consensus       166 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l  245 (680)
T 1ziw_A          166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL  245 (680)
T ss_dssp             GGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGG
T ss_pred             hccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhcc
Confidence              356899999999999988888889999999999999887653211111   134789999999999998888888887


Q ss_pred             CC--CCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCccee-----eCC----cc
Q 047977          237 TN--LSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG-----NIP----PE  305 (569)
Q Consensus       237 ~~--L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~----~~  305 (569)
                      +.  |+.+++++|.++...+..+..+++|+.|++++|.+.+.. ...+.++++|+.++++++....     .+|    ..
T Consensus       246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~  324 (680)
T 1ziw_A          246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF-SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS  324 (680)
T ss_dssp             GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEEC-TTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred             CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccC-hhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence            65  999999999999888888999999999999999988544 4448899999999999764331     122    36


Q ss_pred             ccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccc--cccCcccccC--CCCCEEEcccCcccccCCccccCC
Q 047977          306 IGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLS--GTIPPTLWNL--TNLLSLQLFFNNLSGTIPPEIGSM  381 (569)
Q Consensus       306 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~  381 (569)
                      +..+++|++|++++|.+.+..+..|..+++|++|++++|.+.  ......|..+  ++|+.+++++|.++...+..+..+
T Consensus       325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  404 (680)
T 1ziw_A          325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL  404 (680)
T ss_dssp             TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred             cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence            788999999999999999888888999999999999999743  2223334433  689999999999998888899999


Q ss_pred             CCCCEEEccCCcccccCC-ccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCc--cccChhhhCCCCCc
Q 047977          382 ASLVAFDVNTNQLHGELP-ENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFS--GELPYELCSGFALE  458 (569)
Q Consensus       382 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~  458 (569)
                      ++|+.|++++|.+.+.++ ..+..+++|+.+++++|++.+..+..+..++ +|+.|++++|.+.  +..|..+..+++|+
T Consensus       405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~p~~~~~l~~L~  483 (680)
T 1ziw_A          405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP-SLQRLMLRRVALKNVDSSPSPFQPLRNLT  483 (680)
T ss_dssp             TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCT-TCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred             CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCc-ccccchhccccccccccCCcccccCCCCC
Confidence            999999999999987665 6788999999999999999988888888776 9999999999876  45778889999999


Q ss_pred             EEEccCCcceeeCCccccCCCCCcEEEccCCccccchh--------hhhcCCCCCcEEeCcCCcccccCCcCcccCCCCC
Q 047977          459 ELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNIT--------RAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLS  530 (569)
Q Consensus       459 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--------~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~  530 (569)
                      .|++++|+++...+..+.++++|++|++++|.+++..+        ..++.+++|++|++++|.+....+..|+.+++|+
T Consensus       484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~  563 (680)
T 1ziw_A          484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK  563 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence            99999999997667789999999999999999986432        2378999999999999999855555699999999


Q ss_pred             EEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccCC
Q 047977          531 NLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKNS  568 (569)
Q Consensus       531 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  568 (569)
                      .|++++|++++..+..+..+++|++|++++|++++..|
T Consensus       564 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~  601 (680)
T 1ziw_A          564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK  601 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred             eeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence            99999999998778888999999999999999987543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.6e-54  Score=453.31  Aligned_cols=532  Identities=18%  Similarity=0.188  Sum_probs=343.8

Q ss_pred             EEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEccccc
Q 047977           24 FLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNE  103 (569)
Q Consensus        24 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  103 (569)
                      +++.++..++ .+|..+.  +++++|++++|.+++..|.+|.++++|++|++++|.+....+..|.++++|++|++++|.
T Consensus        16 ~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   92 (606)
T 3t6q_A           16 TYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP   92 (606)
T ss_dssp             EEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence            3444444444 3333333  244555555555544444445555555555555554444444444555555555555555


Q ss_pred             ccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCc
Q 047977          104 LTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPG  183 (569)
Q Consensus       104 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  183 (569)
                      +.+..|..++.+++|++|++++|.+++ ++...+.++++|++|++++|.+.+...+.+..+++|++|++++|.+....+.
T Consensus        93 l~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  171 (606)
T 3t6q_A           93 LIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE  171 (606)
T ss_dssp             CSEECTTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred             ccccChhhhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence            444444444555555555555554442 2112234445555555555554432222333345555555555544444344


Q ss_pred             CcCCCCCCc--EEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccc-----eeccCcc
Q 047977          184 DIGLMSNIQ--LVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQL-----SGGLPLS  256 (569)
Q Consensus       184 ~l~~~~~L~--~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-----~~~~~~~  256 (569)
                      .+..+++|+  .+++++|.+.+..+..+. ...|+++++++|...   +..+..+.++....+....+     .......
T Consensus       172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~  247 (606)
T 3t6q_A          172 DMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNL---LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV  247 (606)
T ss_dssp             HHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSCH---HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred             hhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCchhH---HHHhhhccccchhheechhhccccccccChhH
Confidence            444444454  445555554443333322 234555555544311   11111111111111111000     0011111


Q ss_pred             CcCC--CCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCC
Q 047977          257 LSNL--SRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLT  334 (569)
Q Consensus       257 l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~  334 (569)
                      +..+  .+|+.++++++.+. .++...+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..++
T Consensus       248 ~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  325 (606)
T 3t6q_A          248 FEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP  325 (606)
T ss_dssp             GGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred             hchhhcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccC
Confidence            2222  26788888888776 455555778888888888888877 5677778888888888888888866677788888


Q ss_pred             CCCEEEccCCcccccc-CcccccCCCCCEEEcccCcccccC--CccccCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 047977          335 SLEKLDLSGNQLSGTI-PPTLWNLTNLLSLQLFFNNLSGTI--PPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKF  411 (569)
Q Consensus       335 ~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l  411 (569)
                      +|++|++++|.+.... ...+..+++|++|++++|.+....  +..+..+++|++|++++|.+.+..+..+..+++|+.+
T Consensus       326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  405 (606)
T 3t6q_A          326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL  405 (606)
T ss_dssp             TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred             cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence            8888888888776333 345788888888888888887554  5677888889999998888887777788888889999


Q ss_pred             EccCCcccccCCch-hhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCccee---eCCccccCCCCCcEEEcc
Q 047977          412 SVFTNNFSGSIPGD-FGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTG---SLPACMRNCSNLNRVRFD  487 (569)
Q Consensus       412 ~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~  487 (569)
                      ++++|.+.+..+.. +..++ +|++|++++|.+.+..+..+..+++|++|++++|.+.+   ..+..+..+++|++|+++
T Consensus       406 ~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls  484 (606)
T 3t6q_A          406 DLAFTRLKVKDAQSPFQNLH-LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS  484 (606)
T ss_dssp             ECTTCCEECCTTCCTTTTCT-TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECT
T ss_pred             ECCCCcCCCcccchhhhCcc-cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECC
Confidence            99988888766554 55555 89999999998887777778888999999999998865   223568889999999999


Q ss_pred             CCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccC
Q 047977          488 GNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKN  567 (569)
Q Consensus       488 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  567 (569)
                      +|.+++..|..++.+++|++|++++|++++..|..++.+++| .|++++|++++..|..+..+++|++|++++||+.+.-
T Consensus       485 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  563 (606)
T 3t6q_A          485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC  563 (606)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred             CCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence            999998888889999999999999999988888899999999 9999999999888888889999999999999998754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.7e-53  Score=443.04  Aligned_cols=527  Identities=18%  Similarity=0.168  Sum_probs=423.5

Q ss_pred             CCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCC
Q 047977            3 LSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLET   82 (569)
Q Consensus         3 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~   82 (569)
                      .++..++ ..|..+.  +++++|++++|.+++..+.+|.++++|++|++++|.+.+..|.+|.++++|++|++++|.+..
T Consensus        19 c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~   95 (606)
T 3t6q_A           19 CENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF   95 (606)
T ss_dssp             CTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE
T ss_pred             CCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc
Confidence            4455555 3444444  378999999999988888889999999999999999887778889999999999999998888


Q ss_pred             CCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCC
Q 047977           83 PDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVS  162 (569)
Q Consensus        83 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  162 (569)
                      ..+..|+++++|++|++++|.+.+..+..++.+++|++|++++|.+.+..... +..+++|++|++++|.+.+..+..+.
T Consensus        96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~  174 (606)
T 3t6q_A           96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMS  174 (606)
T ss_dssp             ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHH
T ss_pred             cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhh
Confidence            87788889999999999999988665777888999999999999887532222 34588999999999988876677788


Q ss_pred             CCCCCC--EEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCC-----CcCCCcCCcC
Q 047977          163 KLSNLT--VLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL-----NSTIPPELGL  235 (569)
Q Consensus       163 ~~~~L~--~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-----~~~~~~~~~~  235 (569)
                      .+++|+  .|++++|.+....+..+. ...|+.+++.++..   .+..+..+..+....+.....     .......+..
T Consensus       175 ~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~  250 (606)
T 3t6q_A          175 SLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG  250 (606)
T ss_dssp             TTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred             hhcccceeEEecCCCccCccChhHhh-hccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhHhch
Confidence            888888  888999888776655544 46789999888762   223333344333333322211     1122223333


Q ss_pred             CC--CCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCc
Q 047977          236 CT--NLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQ  313 (569)
Q Consensus       236 ~~--~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  313 (569)
                      +.  +++.++++++.+++..+..+..+++|+.|++++|.+. .++.. +..+++|+.|++++|.+.+..+..+..+++|+
T Consensus       251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  328 (606)
T 3t6q_A          251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLT  328 (606)
T ss_dssp             GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred             hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChh-hcccccCCEEECccCCcCcCchhhhhccCcCC
Confidence            32  6888999999888777777888899999999999887 55554 67889999999999988876677788899999


Q ss_pred             EEecccccccccCC-ccccCCCCCCEEEccCCcccccc--CcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEcc
Q 047977          314 YLFLYRNHFSGPIP-SEIGKLTSLEKLDLSGNQLSGTI--PPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVN  390 (569)
Q Consensus       314 ~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  390 (569)
                      +|++++|.+.+.++ ..+..+++|++|++++|.+....  +..+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus       329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  408 (606)
T 3t6q_A          329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA  408 (606)
T ss_dssp             EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred             EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence            99999998875444 44788999999999999887655  6678889999999999999887778888889999999999


Q ss_pred             CCcccccCCc-cccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccc---cChhhhCCCCCcEEEccCCc
Q 047977          391 TNQLHGELPE-NISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGE---LPYELCSGFALEELTVNGNN  466 (569)
Q Consensus       391 ~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~  466 (569)
                      +|.+.+..+. .+..+++|+.+++++|.+.+..+..+..++ +|++|++++|.+.+.   .+..+..+++|+.|++++|+
T Consensus       409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~  487 (606)
T 3t6q_A          409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD  487 (606)
T ss_dssp             TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT-TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred             CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC-CCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence            9988865543 478899999999999999887787787776 999999999998752   23567888999999999999


Q ss_pred             ceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCccee
Q 047977          467 FTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISG  541 (569)
Q Consensus       467 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  541 (569)
                      +++..|..+.++++|++|++++|.+++..|..++.+++| +|++++|.+++..|..++.+++|+.|++++|++..
T Consensus       488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred             cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence            998888899999999999999999999999999999999 99999999998888889999999999999998874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.1e-52  Score=440.89  Aligned_cols=534  Identities=20%  Similarity=0.199  Sum_probs=384.8

Q ss_pred             cCCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCC
Q 047977            2 DLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLE   81 (569)
Q Consensus         2 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~   81 (569)
                      +.++.+++.+ |..+.  +++++|++++|.+++..+.+|.++++|++|++++|.+++..|.+|.++++|++|++++|.+.
T Consensus        17 ~c~~~~l~~i-p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~   93 (606)
T 3vq2_A           17 QCMDQKLSKV-PDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ   93 (606)
T ss_dssp             ECTTSCCSSC-CTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EccCCCcccC-CCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc
Confidence            4556666633 33333  67888888888887777777888888888888888777666777778888888888888777


Q ss_pred             CCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCcccc-CCchhhhhcCCCCcEEeccCCcccccCCcC
Q 047977           82 TPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSG-LIPERLFTNLGKLEYLNLTDNQFQGKLSPN  160 (569)
Q Consensus        82 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  160 (569)
                      ...+..|+++++|++|++++|.+.+..+..++.+++|++|++++|.+.+ .+|.. |.++++|++|++++|.+.+..+..
T Consensus        94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~~~  172 (606)
T 3vq2_A           94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVND  172 (606)
T ss_dssp             CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEECTTT
T ss_pred             ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecChhh
Confidence            7777777788888888888887775555667778888888888887764 34443 477788888888888777666666


Q ss_pred             CCCCCCCC----EEEccCCccccCCCcCcCCCCCCcEEEcccCcce-ecCCccccCCCCCCEEEcccCCCCcCCCcCCcC
Q 047977          161 VSKLSNLT----VLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFT-GQIPSSLGQLKNLQHLDLRMNALNSTIPPELGL  235 (569)
Q Consensus       161 l~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  235 (569)
                      +..+++|+    ++++++|.+....+..+... +|+.|++++|.+. ...+..+..++.++.+.+..+.+...       
T Consensus       173 ~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-------  244 (606)
T 3vq2_A          173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE-------  244 (606)
T ss_dssp             THHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS-------
T ss_pred             hhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccC-------
Confidence            65555444    67777777765544444443 7777777777664 34455666777777776654433211       


Q ss_pred             CCCCCEEEcccccceeccCccCcCCCCCCEEeC-cCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcE
Q 047977          236 CTNLSFLALAMNQLSGGLPLSLSNLSRLNELGL-SDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQY  314 (569)
Q Consensus       236 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  314 (569)
                       ..+..+.       ......+..+ .++.+.+ ..+.+.+..+.  +..+++|+.++++++.+. .++ .+..+++|++
T Consensus       245 -~~l~~~~-------~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~  311 (606)
T 3vq2_A          245 -RNLEIFE-------PSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQS  311 (606)
T ss_dssp             -CCCSCCC-------GGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSE
T ss_pred             -CcccccC-------hHHhhhhhhc-cHhheeccccccccccccc--cccCCCCCEEEecCccch-hhh-hccccccCCE
Confidence             0010000       0001111111 3455555 34445444443  667788888888888775 344 6777788888


Q ss_pred             EecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCccccc--CCccccCCCCCCEEEccCC
Q 047977          315 LFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGT--IPPEIGSMASLVAFDVNTN  392 (569)
Q Consensus       315 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~  392 (569)
                      |++++|.+. .+| .+ .+++|++|++++|......  .+..+++|++|++++|.++..  .+..+..+++|+.|++++|
T Consensus       312 L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n  386 (606)
T 3vq2_A          312 LSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN  386 (606)
T ss_dssp             EEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC
T ss_pred             EEcccccCc-ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC
Confidence            888888884 666 44 7888888888888554332  566788888888888887754  3667778888888888888


Q ss_pred             cccccCCccccCCCCCCEEEccCCcccccCC-chhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCccee-e
Q 047977          393 QLHGELPENISRLVNLNKFSVFTNNFSGSIP-GDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTG-S  470 (569)
Q Consensus       393 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~  470 (569)
                      .+. .++..+..+++|+.+++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.+.+ .
T Consensus       387 ~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  464 (606)
T 3vq2_A          387 GAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE-KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT  464 (606)
T ss_dssp             SEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT-TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             ccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccc-cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc
Confidence            877 455777888888888888888887766 4555665 88889998888887777788888899999999998876 3


Q ss_pred             CCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCC
Q 047977          471 LPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNL  550 (569)
Q Consensus       471 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l  550 (569)
                      .|..+.++++|++|++++|.+++..|..++.+++|++|++++|++++..|..++.+++|+.|++++|+++ .+|..+..+
T Consensus       465 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l  543 (606)
T 3vq2_A          465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHF  543 (606)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGS
T ss_pred             hHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhh
Confidence            6778888899999999999888888888888999999999999988888888888999999999999888 466668888


Q ss_pred             C-CCCeEeCcCCcCcccCC
Q 047977          551 T-RLGVLSLDSNELTGKNS  568 (569)
Q Consensus       551 ~-~L~~L~l~~n~~~~~~~  568 (569)
                      + +|++|++++||+.+.-+
T Consensus       544 ~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          544 PKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CTTCCEEECCSCCCCCSST
T ss_pred             cccCcEEEccCCCcccCCc
Confidence            7 59999999999887543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.2e-50  Score=433.18  Aligned_cols=531  Identities=20%  Similarity=0.192  Sum_probs=403.2

Q ss_pred             cCCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCc-chhccCCCCCCEEECCCCCC
Q 047977            2 DLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF-PFQLSNLRKVRYLDLGGNFL   80 (569)
Q Consensus         2 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~   80 (569)
                      |.++++++.+..    ..+++++|++++|.+++..+..|.++++|++|++++|.....+ |.+|.++++|++|++++|.+
T Consensus        10 dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l   85 (844)
T 3j0a_A           10 FYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI   85 (844)
T ss_dssp             EESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred             EccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence            456677775543    4578899999999888888888889999999999888554344 77788889999999998888


Q ss_pred             CCCCCccCCCCCCCcEEEcccccccccCCcc--ccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCC
Q 047977           81 ETPDWSKFSNMPSLTHLSLCYNELTLEFPSF--ILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLS  158 (569)
Q Consensus        81 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  158 (569)
                      ....+..|..+++|++|++++|.+.+..+..  +..+++|++|++++|.+++..+...|.++++|++|++++|.+.+..+
T Consensus        86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~  165 (844)
T 3j0a_A           86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE  165 (844)
T ss_dssp             CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred             cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence            8887888888899999999988887655544  78888899999988888765554556888888888888888877666


Q ss_pred             cCCCCC--CCCCEEEccCCccccCCCcCcCCCCC------CcEEEcccCcceecCCccccC---CCCCCEEEcccCCCCc
Q 047977          159 PNVSKL--SNLTVLRLATNKFSGPIPGDIGLMSN------IQLVELFNNSFTGQIPSSLGQ---LKNLQHLDLRMNALNS  227 (569)
Q Consensus       159 ~~l~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~------L~~L~l~~~~~~~~~~~~l~~---l~~L~~L~l~~~~~~~  227 (569)
                      ..+..+  ++|+.|++++|.+....+..+..+.+      |+.|++++|.+....+..+..   ...++.+.+..+....
T Consensus       166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~  245 (844)
T 3j0a_A          166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA  245 (844)
T ss_dssp             GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred             HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence            666666  78888888888877666655555544      777777777665554444432   2456666665332211


Q ss_pred             CCCcCCcCCCCCCEEEcccccceeccCccCcC--CCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCcc
Q 047977          228 TIPPELGLCTNLSFLALAMNQLSGGLPLSLSN--LSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPE  305 (569)
Q Consensus       228 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  305 (569)
                      .    +           ..+.+.......+..  .++|+.|++++|.+.+ .....+..+++|+.|++++|.+.+..+..
T Consensus       246 ~----~-----------~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~  309 (844)
T 3j0a_A          246 G----F-----------GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEA  309 (844)
T ss_dssp             S----S-----------SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCEECTTT
T ss_pred             c----c-----------cccccCCCChhhhhccccCCccEEECCCCcccc-cChhhhhcCCCCCEEECCCCcCCCCChHH
Confidence            1    0           011111112222333  3678888888888774 34444778888999999988888777778


Q ss_pred             ccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCC
Q 047977          306 IGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLV  385 (569)
Q Consensus       306 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  385 (569)
                      +..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+..|..+++|++|++++|.++.     +..+++|+
T Consensus       310 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~  384 (844)
T 3j0a_A          310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIP  384 (844)
T ss_dssp             TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCSCS
T ss_pred             hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-----ccCCCCcc
Confidence            8888899999999998887777888888999999999998887777778888999999999988762     23378899


Q ss_pred             EEEccCCcccccCCccccCCCCCCEEEccCCcccccCCch-hhccCCCCceEEcccCcCccccCh-hhhCCCCCcEEEcc
Q 047977          386 AFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGD-FGKFSPSLINVSFSNNSFSGELPY-ELCSGFALEELTVN  463 (569)
Q Consensus       386 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~  463 (569)
                      .+++++|.+. .+|..   ..+++.+++++|.+++..... +..++ +|+.|++++|.+.+..+. ....+++|+.|+++
T Consensus       385 ~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls  459 (844)
T 3j0a_A          385 DIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVP-HLQILILNQNRFSSCSGDQTPSENPSLEQLFLG  459 (844)
T ss_dssp             EEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCT-TCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEE
T ss_pred             hhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCC-ccceeeCCCCcccccccccccccCCccccccCC
Confidence            9999998887 44432   567888999999887643333 23444 999999999998754332 34457899999999


Q ss_pred             CCccee-----eCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCc
Q 047977          464 GNNFTG-----SLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNK  538 (569)
Q Consensus       464 ~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~  538 (569)
                      +|.+..     ..+..+.++++|+.|++++|.+++..+..|+.+++|++|++++|.+++..+..+.  ++|+.|++++|+
T Consensus       460 ~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~  537 (844)
T 3j0a_A          460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQ  537 (844)
T ss_dssp             SCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEEC
T ss_pred             CCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCc
Confidence            998862     3345688899999999999999988888899999999999999999877666666  899999999999


Q ss_pred             ceecCCcCccCCCCCCeEeCcCCcCcccC
Q 047977          539 ISGGIPAELGNLTRLGVLSLDSNELTGKN  567 (569)
Q Consensus       539 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  567 (569)
                      +++..|..+   ++|+.|++++||+..+-
T Consensus       538 l~~~~~~~~---~~L~~l~l~~Np~~C~c  563 (844)
T 3j0a_A          538 LLAPNPDVF---VSLSVLDITHNKFICEC  563 (844)
T ss_dssp             CCCCCSCCC---SSCCEEEEEEECCCCSS
T ss_pred             CCCCChhHh---CCcCEEEecCCCccccc
Confidence            998888765   47899999999998643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4e-50  Score=421.49  Aligned_cols=504  Identities=19%  Similarity=0.170  Sum_probs=423.0

Q ss_pred             CcCCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCC
Q 047977            1 LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFL   80 (569)
Q Consensus         1 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~   80 (569)
                      |||++|++.++.+.+|.++++|++|++++|.+++..+.+|.++++|++|++++|.+++..|..|.++++|++|++++|.+
T Consensus        37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l  116 (606)
T 3vq2_A           37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL  116 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC
T ss_pred             EECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc
Confidence            58999999999999999999999999999999988899999999999999999999988899999999999999999999


Q ss_pred             CCCCCccCCCCCCCcEEEcccccccc-cCCccccCCCCCCEEEcccCccccCCchhhhhcCCCC----cEEeccCCcccc
Q 047977           81 ETPDWSKFSNMPSLTHLSLCYNELTL-EFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL----EYLNLTDNQFQG  155 (569)
Q Consensus        81 ~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~  155 (569)
                      ....+..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+. .+..+.+|    +++++++|.+.+
T Consensus       117 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~~l~~L~l~~n~l~~  195 (606)
T 3vq2_A          117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN-DLQFLRENPQVNLSLDMSLNPIDF  195 (606)
T ss_dssp             CCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT-TTHHHHHCTTCCCEEECTTCCCCE
T ss_pred             ccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh-hhhhhhccccccceeeccCCCcce
Confidence            98887889999999999999999985 5689999999999999999999854443 34555554    489999999986


Q ss_pred             cCCcCCCCCCCCCEEEccCCccc-cCCCcCcCCCCCCcEEEcccCccee------cCCccccCCC--CCCEEEc-ccCCC
Q 047977          156 KLSPNVSKLSNLTVLRLATNKFS-GPIPGDIGLMSNIQLVELFNNSFTG------QIPSSLGQLK--NLQHLDL-RMNAL  225 (569)
Q Consensus       156 ~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~------~~~~~l~~l~--~L~~L~l-~~~~~  225 (569)
                      ..+..+... +|+.|++++|.+. ...+..+..++.++.+.+....+..      ..+..+..+.  .++.+.+ ..+.+
T Consensus       196 ~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~  274 (606)
T 3vq2_A          196 IQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF  274 (606)
T ss_dssp             ECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTC
T ss_pred             eCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccc
Confidence            665555554 8999999999765 3345567788888888876543321      1111121211  4566666 45555


Q ss_pred             CcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCcc
Q 047977          226 NSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPE  305 (569)
Q Consensus       226 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  305 (569)
                      ....+. +..+++|+.+++.++.+... + .+..+++|+.|++++|.+ +.++.  + .+++|+.+++++|...+..  .
T Consensus       275 ~~~~~~-~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l-~~lp~--~-~l~~L~~L~l~~n~~~~~~--~  345 (606)
T 3vq2_A          275 SDDIVK-FHCLANVSAMSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQL-KQFPT--L-DLPFLKSLTLTMNKGSISF--K  345 (606)
T ss_dssp             CGGGGS-CGGGTTCSEEEEESCCCCCC-C-CCCTTCCCSEEEEESCCC-SSCCC--C-CCSSCCEEEEESCSSCEEC--C
T ss_pred             cccccc-cccCCCCCEEEecCccchhh-h-hccccccCCEEEcccccC-ccccc--C-CCCccceeeccCCcCccch--h
Confidence            555554 88899999999999998743 4 788899999999999998 46663  4 8999999999999655444  4


Q ss_pred             ccCCCCCcEEeccccccccc--CCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCC-ccccCCC
Q 047977          306 IGLLTKLQYLFLYRNHFSGP--IPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIP-PEIGSMA  382 (569)
Q Consensus       306 ~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~  382 (569)
                      +..+++|+.|++++|.+++.  .+..+..+++|++|++++|.+.. .+..+..+++|++|++++|.+.+..+ ..+..++
T Consensus       346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  424 (606)
T 3vq2_A          346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE  424 (606)
T ss_dssp             CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred             hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence            66899999999999998755  37788899999999999999874 55788999999999999999987666 6788999


Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCEEEccCCcccc-cCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEE
Q 047977          383 SLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSG-SIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELT  461 (569)
Q Consensus       383 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  461 (569)
                      +|+.|++++|.+.+..+..+..+++|+.+++++|.+++ ..|..+..++ +|++|++++|.+.+..+..+..+++|++|+
T Consensus       425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  503 (606)
T 3vq2_A          425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT-NLTFLDLSKCQLEQISWGVFDTLHRLQLLN  503 (606)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC-CCCEEECCCCcCCccChhhhcccccCCEEE
Confidence            99999999999998888889999999999999999987 3677777776 999999999999988888899999999999


Q ss_pred             ccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCC-CCcEEeCcCCccccc
Q 047977          462 VNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHP-RLDFIRLSGNHFIGE  518 (569)
Q Consensus       462 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~  518 (569)
                      +++|++++..|..+.++++|++|++++|.++ .+|..+..++ +|++|++++|++...
T Consensus       504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred             CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence            9999999888899999999999999999998 5666688887 699999999998743

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.2e-48  Score=403.55  Aligned_cols=514  Identities=17%  Similarity=0.182  Sum_probs=390.9

Q ss_pred             CCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEccc
Q 047977           22 LTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCY  101 (569)
Q Consensus        22 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  101 (569)
                      .++++.++.+++ .+|..+.  +++++|++++|.+++..+.+|.++++|++|++++|.+....+..|+.+++|++|++++
T Consensus         9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~   85 (570)
T 2z63_A            9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG   85 (570)
T ss_dssp             TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence            456777776676 4555554  5788999999988877777888889999999998888887777888888899999988


Q ss_pred             ccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccc-cCCcCCCCCCCCCEEEccCCccccC
Q 047977          102 NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQG-KLSPNVSKLSNLTVLRLATNKFSGP  180 (569)
Q Consensus       102 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~  180 (569)
                      |.+....+..+..+++|++|++++|.+++ ++...+.++++|++|++++|.+.+ ..+..+..+++|++|++++|.+...
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCC-STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred             CcCCccCHhhhcCcccccccccccccccc-CCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence            88886667788888888888888888773 343335788888888888888775 3567778888888888888877766


Q ss_pred             CCcCcCCCCCC----cEEEcccCcceecCCccccCCCCCCEEEcccCCCCc-CCCcCCcCCCCCCEEEcccccceeccCc
Q 047977          181 IPGDIGLMSNI----QLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNS-TIPPELGLCTNLSFLALAMNQLSGGLPL  255 (569)
Q Consensus       181 ~~~~l~~~~~L----~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~  255 (569)
                      .+..+..+++|    +.+++++|.+....+..+... +|+++++++|.... ..+..+..++.++...+....+.     
T Consensus       165 ~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~-----  238 (570)
T 2z63_A          165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR-----  238 (570)
T ss_dssp             CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECC-----
T ss_pred             cHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccccc-----
Confidence            56666666666    677777777776655555544 67777777664221 11222334444444433221111     


Q ss_pred             cCcCCCCCCEEeCcCCcCccccCccccCCCC--CCcEEEccCC-cceeeCCccccCCCCCcEEecccccccccCCccccC
Q 047977          256 SLSNLSRLNELGLSDNFLSGEISANLIGNWT--ELESLQIQNN-SFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGK  332 (569)
Q Consensus       256 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  332 (569)
                         ....++           .+....+.+++  .++.+++.++ .+.+..+..+..+++|+.|++++|.+. .+|..+..
T Consensus       239 ---~~~~l~-----------~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~  303 (570)
T 2z63_A          239 ---NEGNLE-----------KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYN  303 (570)
T ss_dssp             ---CCSSCE-----------ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSC
T ss_pred             ---Cchhhh-----------hcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhcc
Confidence               111111           11111122233  2556677766 555566777888899999999999887 57777777


Q ss_pred             CCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccC--CccccCCCCCCE
Q 047977          333 LTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL--PENISRLVNLNK  410 (569)
Q Consensus       333 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~  410 (569)
                      + +|++|++++|.+. ..+.  ..+++|+.+++++|.+....+.  ..+++|+.|++++|.+.+..  +..+..+++|+.
T Consensus       304 ~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~  377 (570)
T 2z63_A          304 F-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY  377 (570)
T ss_dssp             C-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCE
T ss_pred             C-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCE
Confidence            7 9999999999887 3333  4778999999999987654433  67889999999999887543  567788999999


Q ss_pred             EEccCCcccccCCchhhccCCCCceEEcccCcCccccC-hhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCC
Q 047977          411 FSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELP-YELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGN  489 (569)
Q Consensus       411 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  489 (569)
                      +++++|.+.+..+. +..++ +|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|
T Consensus       378 L~l~~n~l~~~~~~-~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  455 (570)
T 2z63_A          378 LDLSFNGVITMSSN-FLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN  455 (570)
T ss_dssp             EECCSCSEEEEEEE-EETCT-TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             EECCCCcccccccc-ccccC-CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence            99999988855443 66665 99999999999876555 46778899999999999999888888999999999999999


Q ss_pred             ccc-cchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccCC
Q 047977          490 QFT-GNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKNS  568 (569)
Q Consensus       490 ~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  568 (569)
                      .+. +.+|..++.+++|++|++++|.+++..|..|+.+++|+.|++++|++++..+..+..+++|++|++++|++++..|
T Consensus       456 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            997 5688889999999999999999998889999999999999999999998888889999999999999999999876

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.5e-47  Score=412.85  Aligned_cols=514  Identities=19%  Similarity=0.215  Sum_probs=410.8

Q ss_pred             CEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCC-CCCCCCccCCCCCCCcEEEccc
Q 047977           23 TFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNF-LETPDWSKFSNMPSLTHLSLCY  101 (569)
Q Consensus        23 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~  101 (569)
                      ++.+.++++++ .+|.   -.+++++|++++|.+++..+..|.++++|++|++++|. +..+.+..|..+++|++|++++
T Consensus         7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            46777888888 4555   34789999999999998888889999999999999994 4445577889999999999999


Q ss_pred             ccccccCCccccCCCCCCEEEcccCccccCCch-hhhhcCCCCcEEeccCCcccccCC-cCCCCCCCCCEEEccCCcccc
Q 047977          102 NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPE-RLFTNLGKLEYLNLTDNQFQGKLS-PNVSKLSNLTVLRLATNKFSG  179 (569)
Q Consensus       102 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~  179 (569)
                      |.+....|..+..+++|++|++++|.+++.++. ..|.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+..
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            999877889999999999999999998865544 346888999999999998876544 468889999999999988877


Q ss_pred             CCCcCcCCC--CCCcEEEcccCcceecCCccccCCCC------CCEEEcccCCCCcCCCcCCcC---CCCCCEEEccccc
Q 047977          180 PIPGDIGLM--SNIQLVELFNNSFTGQIPSSLGQLKN------LQHLDLRMNALNSTIPPELGL---CTNLSFLALAMNQ  248 (569)
Q Consensus       180 ~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~~---~~~L~~l~l~~~~  248 (569)
                      ..+..+..+  ++|+.|++++|.+.+..+..+..+++      |++|++++|.+....+..+..   ...++.+.+..+.
T Consensus       163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~  242 (844)
T 3j0a_A          163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI  242 (844)
T ss_dssp             CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred             eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence            777777665  78888888888877666655555544      777777777665544443322   1344455444322


Q ss_pred             ceeccCccCcCCCCCCEEeCcCCcCccccCccccCC--CCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccC
Q 047977          249 LSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGN--WTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPI  326 (569)
Q Consensus       249 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  326 (569)
                      ....               +..+.+. ......+.+  .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..
T Consensus       243 ~~~~---------------~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~  306 (844)
T 3j0a_A          243 MGAG---------------FGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA  306 (844)
T ss_dssp             CBCS---------------SSCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC
T ss_pred             cccc---------------ccccccC-CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC
Confidence            2110               0111121 112222333  378999999999999888888999999999999999999888


Q ss_pred             CccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCC
Q 047977          327 PSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLV  406 (569)
Q Consensus       327 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  406 (569)
                      +..|..+++|++|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+     +..++
T Consensus       307 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~  381 (844)
T 3j0a_A          307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIP  381 (844)
T ss_dssp             TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCC
T ss_pred             hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-----ccCCC
Confidence            8899999999999999999987888899999999999999999987777789999999999999999873     33488


Q ss_pred             CCCEEEccCCcccccCCchhhccCCCCceEEcccCcCcccc-ChhhhCCCCCcEEEccCCcceeeCC-ccccCCCCCcEE
Q 047977          407 NLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGEL-PYELCSGFALEELTVNGNNFTGSLP-ACMRNCSNLNRV  484 (569)
Q Consensus       407 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L  484 (569)
                      +|+.+.+++|+++ .+|..    ...++.|++++|.+.+.. +..+..+++|+.|++++|++++..+ ..+..+++|+.|
T Consensus       382 ~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L  456 (844)
T 3j0a_A          382 SIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL  456 (844)
T ss_dssp             SCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBC
T ss_pred             CcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccc
Confidence            9999999999988 33332    348999999999987542 2345678999999999999985433 245678999999


Q ss_pred             EccCCccc-----cchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCc
Q 047977          485 RFDGNQFT-----GNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLD  559 (569)
Q Consensus       485 ~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  559 (569)
                      ++++|.+.     +..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+.  ++|+.|+++
T Consensus       457 ~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls  534 (844)
T 3j0a_A          457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDIS  534 (844)
T ss_dssp             EEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEE
T ss_pred             cCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECC
Confidence            99999986     34456788999999999999999988888899999999999999999987777666  899999999


Q ss_pred             CCcCcccCC
Q 047977          560 SNELTGKNS  568 (569)
Q Consensus       560 ~n~~~~~~~  568 (569)
                      +|++++..|
T Consensus       535 ~N~l~~~~~  543 (844)
T 3j0a_A          535 RNQLLAPNP  543 (844)
T ss_dssp             EECCCCCCS
T ss_pred             CCcCCCCCh
Confidence            999999876

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-46  Score=392.46  Aligned_cols=508  Identities=21%  Similarity=0.207  Sum_probs=375.7

Q ss_pred             CCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCC
Q 047977            4 SHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETP   83 (569)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~   83 (569)
                      ++.+++. .|..+  .+++++|++++|.+++..+.+|.++++|++|++++|.+++..+.+|.++++|++|++++|.+...
T Consensus        15 ~~~~l~~-ip~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~   91 (570)
T 2z63_A           15 MELNFYK-IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL   91 (570)
T ss_dssp             CSSCCSS-CCSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             CCCCccc-cCCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc
Confidence            3445553 34434  35899999999999988888999999999999999999977788899999999999999999988


Q ss_pred             CCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCcccc-CCchhhhhcCCCCcEEeccCCcccccCCcCCC
Q 047977           84 DWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSG-LIPERLFTNLGKLEYLNLTDNQFQGKLSPNVS  162 (569)
Q Consensus        84 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  162 (569)
                      .+..|.++++|++|++++|.+....+..++.+++|++|++++|.+.+ .+|.. |.++++|++|++++|.+.+..+..+.
T Consensus        92 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~~~~  170 (570)
T 2z63_A           92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLR  170 (570)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEECGGGGH
T ss_pred             CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccceecHHHcc
Confidence            88899999999999999999985555578999999999999999875 35654 58999999999999999877777787


Q ss_pred             CCCCC----CEEEccCCccccCCCcCcCCCCCCcEEEcccCcce-ecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCC
Q 047977          163 KLSNL----TVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFT-GQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCT  237 (569)
Q Consensus       163 ~~~~L----~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  237 (569)
                      .+++|    +.+++++|.+....+..+... +|+.+++.++... ...+..+..++.++...+....+..        ..
T Consensus       171 ~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~--------~~  241 (570)
T 2z63_A          171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--------EG  241 (570)
T ss_dssp             HHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC--------CS
T ss_pred             chhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC--------ch
Confidence            78888    899999999887777766655 8999999887432 1234456677777776665332211        11


Q ss_pred             CCCEEEcccccceeccCccCcCCC--CCCEEeCcCC-cCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcE
Q 047977          238 NLSFLALAMNQLSGGLPLSLSNLS--RLNELGLSDN-FLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQY  314 (569)
Q Consensus       238 ~L~~l~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  314 (569)
                      +++.+  .        ...+..++  .++.+.+.++ .+. ......+..+++|+.++++++.+. .+|..+..+ +|++
T Consensus       242 ~l~~~--~--------~~~~~~l~~l~l~~l~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~  308 (570)
T 2z63_A          242 NLEKF--D--------KSALEGLCNLTIEEFRLAYLDYYL-DDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQH  308 (570)
T ss_dssp             SCEEC--C--------TTTTGGGGGSEEEEEEEEETTEEE-SCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSE
T ss_pred             hhhhc--c--------hhhhccccccchhhhhhhcchhhh-hhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccE
Confidence            11111  0        01111111  2344444444 222 222233556677777777777665 455556666 7777


Q ss_pred             EecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccC--CccccCCCCCCEEEccCC
Q 047977          315 LFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTI--PPEIGSMASLVAFDVNTN  392 (569)
Q Consensus       315 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~  392 (569)
                      |++++|.+. .+|.  ..+++|++|++++|.+....+.  ..+++|++|++++|.++...  +..+..+++|+.|++++|
T Consensus       309 L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n  383 (570)
T 2z63_A          309 LELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN  383 (570)
T ss_dssp             EEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC
T ss_pred             EeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC
Confidence            777777766 4433  3567777777777776544332  56777777777777766432  455667778888888887


Q ss_pred             cccccCCccccCCCCCCEEEccCCcccccCC-chhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcce-ee
Q 047977          393 QLHGELPENISRLVNLNKFSVFTNNFSGSIP-GDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFT-GS  470 (569)
Q Consensus       393 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~  470 (569)
                      .+.+. +..+..+++|+.+++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.+. +.
T Consensus       384 ~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  461 (570)
T 2z63_A          384 GVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  461 (570)
T ss_dssp             SEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCT-TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             ccccc-cccccccCCCCEEEccCCccccccchhhhhcCC-CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcccc
Confidence            77743 3347778888888888888776655 3455554 8888888888887777777888888899999888886 46


Q ss_pred             CCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCC
Q 047977          471 LPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIP  544 (569)
Q Consensus       471 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~  544 (569)
                      .|..+..+++|++|++++|.+++..|..++.+++|++|++++|++++..+..|..+++|+.|++++|++++..|
T Consensus       462 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             chhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            77888888899999999998888778888888999999999998887777778888899999999988886544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.6e-45  Score=381.88  Aligned_cols=490  Identities=18%  Similarity=0.185  Sum_probs=262.0

Q ss_pred             CCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcc
Q 047977           21 NLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLC  100 (569)
Q Consensus        21 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  100 (569)
                      ...+.+.+++.++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+....+..|..+++|++|+++
T Consensus         6 ~~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls   82 (549)
T 2z81_A            6 ASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS   82 (549)
T ss_dssp             TTSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence            3334455555555 3444333  566666666666665555556666666666666666655555555556666666666


Q ss_pred             cccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcc-cccCCcCCCCCCCCCEEEccCCcccc
Q 047977          101 YNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQF-QGKLSPNVSKLSNLTVLRLATNKFSG  179 (569)
Q Consensus       101 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~  179 (569)
                      +|.+.+..+..++.+++|++|++++|.+++......+.++++|++|++++|.. ....+..+..+++|++|++++|.+. 
T Consensus        83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-  161 (549)
T 2z81_A           83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-  161 (549)
T ss_dssp             TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-
T ss_pred             CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc-
Confidence            66555444444555555555555555554211111234455555555555442 2122233444444444444444444 


Q ss_pred             CCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceecc---Ccc
Q 047977          180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGL---PLS  256 (569)
Q Consensus       180 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~---~~~  256 (569)
                                             +..|..+..+++|++|+++.|.+.......+..+++|+.+++++|.+++..   ...
T Consensus       162 -----------------------~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  218 (549)
T 2z81_A          162 -----------------------NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV  218 (549)
T ss_dssp             -----------------------EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSS
T ss_pred             -----------------------ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccch
Confidence                                   444444444444444444444432211111223344444444444433210   011


Q ss_pred             CcCCCCCCEEeCcCCcCccccCc---cccCCCCCCcEEEccCCcceeeC------CccccCCCCCcEEecccccccccCC
Q 047977          257 LSNLSRLNELGLSDNFLSGEISA---NLIGNWTELESLQIQNNSFMGNI------PPEIGLLTKLQYLFLYRNHFSGPIP  327 (569)
Q Consensus       257 l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~  327 (569)
                      ...+++|+.|+++++.+.+....   ..+..+++++.+++++|.+.+..      ...+..+++++.+.+.++.+.... 
T Consensus       219 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-  297 (549)
T 2z81_A          219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY-  297 (549)
T ss_dssp             CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG-
T ss_pred             hhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhh-
Confidence            12234455555555444322211   11234455555555555544211      011233444455555444433110 


Q ss_pred             ccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccc-cCCCCCCEEEccCCcccccCC---cccc
Q 047977          328 SEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELP---ENIS  403 (569)
Q Consensus       328 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~---~~~~  403 (569)
                       .+.                 ..+..+...++|+++++++|.+. .++..+ ..+++|++|++++|.+.+..+   ..+.
T Consensus       298 -~~~-----------------~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  358 (549)
T 2z81_A          298 -LFY-----------------DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG  358 (549)
T ss_dssp             -GSC-----------------CCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTT
T ss_pred             -hcc-----------------cchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhh
Confidence             000                 00111223345666666665554 333333 345666666666666554332   2245


Q ss_pred             CCCCCCEEEccCCcccccCC--chhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCC
Q 047977          404 RLVNLNKFSVFTNNFSGSIP--GDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNL  481 (569)
Q Consensus       404 ~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  481 (569)
                      .+++|+.|++++|.+++..+  ..+..++ +|++|++++|++. .+|..+..+++|++|++++|+++ .++..+.  ++|
T Consensus       359 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L  433 (549)
T 2z81_A          359 AWPSLQTLVLSQNHLRSMQKTGEILLTLK-NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTL  433 (549)
T ss_dssp             SSTTCCEEECTTSCCCCHHHHHHHGGGCT-TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTC
T ss_pred             ccccCcEEEccCCcccccccchhhhhcCC-CCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCc
Confidence            56666666666666653321  2344444 7777777777776 56666666778888888888776 4444332  578


Q ss_pred             cEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCC
Q 047977          482 NRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSN  561 (569)
Q Consensus       482 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  561 (569)
                      ++|++++|.+++..    +.+++|++|++++|+++ .+|. ...+++|+.|++++|++++..|..++.+++|++|++++|
T Consensus       434 ~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  507 (549)
T 2z81_A          434 EVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN  507 (549)
T ss_dssp             SEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred             eEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence            88888888877542    47788888888888887 4554 467888888888888888877777888888888888888


Q ss_pred             cCcccCC
Q 047977          562 ELTGKNS  568 (569)
Q Consensus       562 ~~~~~~~  568 (569)
                      ++.+..|
T Consensus       508 ~~~~~~~  514 (549)
T 2z81_A          508 PWDCSCP  514 (549)
T ss_dssp             CBCCCHH
T ss_pred             CccCCCc
Confidence            8887654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.7e-44  Score=374.18  Aligned_cols=482  Identities=18%  Similarity=0.174  Sum_probs=327.8

Q ss_pred             cCCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCC
Q 047977            2 DLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLE   81 (569)
Q Consensus         2 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~   81 (569)
                      |.++++++.+.+ .+.  ++|++|++++|.+++..+.++.++++|++|++++|.+++..|.+|.++++|++|++++|.+.
T Consensus        11 ~~~~~~l~~ip~-~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~   87 (549)
T 2z81_A           11 DGRSRSFTSIPS-GLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS   87 (549)
T ss_dssp             ECTTSCCSSCCS-CCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             ECCCCccccccc-cCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence            456778875444 443  79999999999999888899999999999999999999888888999999999999999999


Q ss_pred             CCCCccCCCCCCCcEEEcccccccc-cCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcC
Q 047977           82 TPDWSKFSNMPSLTHLSLCYNELTL-EFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPN  160 (569)
Q Consensus        82 ~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  160 (569)
                      ...+..|+.+++|++|++++|.+.. ..+..++.+++|++|++++|...+.++...|.++++|++|++++|.+.+..+..
T Consensus        88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  167 (549)
T 2z81_A           88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS  167 (549)
T ss_dssp             SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred             ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence            9888889999999999999999985 356788999999999999998555677666799999999999999999888889


Q ss_pred             CCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecC--C-ccccCCCCCCEEEcccCCCCcCCC----cCC
Q 047977          161 VSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQI--P-SSLGQLKNLQHLDLRMNALNSTIP----PEL  233 (569)
Q Consensus       161 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~-~~l~~l~~L~~L~l~~~~~~~~~~----~~~  233 (569)
                      +..+++|++|+++++.........+..+++|+.|++++|.+.+..  + .....+++|+.|+++++.+.+..+    ..+
T Consensus       168 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~  247 (549)
T 2z81_A          168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL  247 (549)
T ss_dssp             TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGG
T ss_pred             hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHh
Confidence            999999999999988765332222345777778887777765421  1 112335566666666665443211    122


Q ss_pred             cCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceee-----CCccccC
Q 047977          234 GLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGN-----IPPEIGL  308 (569)
Q Consensus       234 ~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~  308 (569)
                      ..+++|+.+++++|.+.+.....                   ......+..+++++.+++.++.+...     .+..+..
T Consensus       248 ~~~~~L~~l~l~~~~~~~~~~~~-------------------~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~  308 (549)
T 2z81_A          248 RYILELSEVEFDDCTLNGLGDFN-------------------PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL  308 (549)
T ss_dssp             GGCTTCCEEEEESCEEECCSCCC-------------------CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred             hhhcccccccccccccccccccc-------------------ccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence            34455555555555443211000                   00011134556667777666554321     1111233


Q ss_pred             CCCCcEEecccccccccCCccc-cCCCCCCEEEccCCccccccC---cccccCCCCCEEEcccCcccccCC--ccccCCC
Q 047977          309 LTKLQYLFLYRNHFSGPIPSEI-GKLTSLEKLDLSGNQLSGTIP---PTLWNLTNLLSLQLFFNNLSGTIP--PEIGSMA  382 (569)
Q Consensus       309 ~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~  382 (569)
                      .++|+.|++++|.+. .+|..+ ..+++|++|++++|.+.+..+   ..+..+++|++|++++|.++....  ..+..++
T Consensus       309 ~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~  387 (549)
T 2z81_A          309 LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK  387 (549)
T ss_dssp             STTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred             cccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence            457777777777776 455444 467778888888777765442   235667777777777777753321  3466677


Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEc
Q 047977          383 SLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTV  462 (569)
Q Consensus       383 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  462 (569)
                      +|++|++++|.+. .+|..+..+++|+.+++++|.++. ++..+   +++|++|++++|.+++..    ..+++|++|++
T Consensus       388 ~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~---~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~L  458 (549)
T 2z81_A          388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI---PQTLEVLDVSNNNLDSFS----LFLPRLQELYI  458 (549)
T ss_dssp             TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS---CTTCSEEECCSSCCSCCC----CCCTTCCEEEC
T ss_pred             CCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh---cCCceEEECCCCChhhhc----ccCChhcEEEC
Confidence            7777777777776 566666667777777777776652 22222   236666666666665321    34556666666


Q ss_pred             cCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccc
Q 047977          463 NGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIG  517 (569)
Q Consensus       463 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  517 (569)
                      ++|+++ .+|. ...+++|++|++++|.+++..+..++.+++|++|++++|++..
T Consensus       459 s~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  511 (549)
T 2z81_A          459 SRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  511 (549)
T ss_dssp             CSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred             CCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence            666665 4443 3456666666666666666556666666666666666666543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2e-42  Score=365.87  Aligned_cols=527  Identities=20%  Similarity=0.174  Sum_probs=328.3

Q ss_pred             EeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccccc
Q 047977           25 LDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNEL  104 (569)
Q Consensus        25 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  104 (569)
                      .+-++-+++ .+|..++  +++++|++++|.+++..+.+|.++++|++|++++|.+..+.+.+|.++++|++|++++|.+
T Consensus        36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI  112 (635)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence            344443444 3343333  3455555555555544444555555555555555555555555555555555555555555


Q ss_pred             cccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCccccc-CCcCCCCCCCCCEEEccCCccccCCCc
Q 047977          105 TLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGK-LSPNVSKLSNLTVLRLATNKFSGPIPG  183 (569)
Q Consensus       105 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~  183 (569)
                      ....+..|..+++|++|++++|.++ .++...|.++++|++|++++|.+.+. .+..+..+++|++|++++|.+....+.
T Consensus       113 ~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          113 QSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             CEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            5433444555555555555555554 33333345555555555555555432 234445555555555555555444443


Q ss_pred             CcCCCCC----CcEEEcccCcceecCCccccCCCCCCEEEcccCCCCc-CCCcCCcCCCCCCEEEcccccc------eec
Q 047977          184 DIGLMSN----IQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNS-TIPPELGLCTNLSFLALAMNQL------SGG  252 (569)
Q Consensus       184 ~l~~~~~----L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~------~~~  252 (569)
                      .+..+.+    ...++++.+.+....+..+ ....++.+++.++.... .....+..+..++...+..+..      ...
T Consensus       192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~  270 (635)
T 4g8a_A          192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF  270 (635)
T ss_dssp             GGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred             cccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence            3332222    2234444444443222222 22233444444443211 1111223333333333221111      111


Q ss_pred             cCccCcCCCCCCEEeCcCCcCc--cccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccc
Q 047977          253 LPLSLSNLSRLNELGLSDNFLS--GEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEI  330 (569)
Q Consensus       253 ~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  330 (569)
                      ....+.....+....+..+...  .......+....+++.+.+.++.+...  ..+.....++.|++.+|.+....+   
T Consensus       271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---  345 (635)
T 4g8a_A          271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---  345 (635)
T ss_dssp             CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---
T ss_pred             cccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---
Confidence            1122223333333333222111  011112245567788888887776543  235566788888888887764332   


Q ss_pred             cCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccc--cCCccccCCCCCCEEEccCCcccccCCccccCCCCC
Q 047977          331 GKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSG--TIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNL  408 (569)
Q Consensus       331 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L  408 (569)
                      ..++.|+.+.+..+.....  .....+++|+.+++++|.+..  ..+..+..+.+++.+++..+... ..+..+..++++
T Consensus       346 ~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L  422 (635)
T 4g8a_A          346 LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQL  422 (635)
T ss_dssp             CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTC
T ss_pred             ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccc
Confidence            3456788888888876533  234567889999998887753  34455567788999999888776 344567788999


Q ss_pred             CEEEccCCcccccCCch-hhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcce-eeCCccccCCCCCcEEEc
Q 047977          409 NKFSVFTNNFSGSIPGD-FGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFT-GSLPACMRNCSNLNRVRF  486 (569)
Q Consensus       409 ~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l  486 (569)
                      +.+++.++......+.. +..+. +++.++++.|.+.+..+..+..+++++.|++++|.+. ...|..+..+++|++|+|
T Consensus       423 ~~l~l~~~~~~~~~~~~~~~~l~-~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~L  501 (635)
T 4g8a_A          423 EHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL  501 (635)
T ss_dssp             CEEECTTSEEESTTSSCTTTTCT-TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             cchhhhhcccccccccccccccc-ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEEC
Confidence            99999888877665544 44444 9999999999998777778888899999999999754 356788999999999999


Q ss_pred             cCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCC-CCCCeEeCcCCcCcc
Q 047977          487 DGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNL-TRLGVLSLDSNELTG  565 (569)
Q Consensus       487 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~  565 (569)
                      ++|.+++..|..|+.+++|++|++++|++++..+..|+.+++|+.|++++|++++..|..++.+ ++|++|++++||++-
T Consensus       502 s~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            9999998889999999999999999999998888889999999999999999999999999988 689999999999974

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.5e-43  Score=364.31  Aligned_cols=455  Identities=20%  Similarity=0.176  Sum_probs=303.6

Q ss_pred             CEEECCCCCCCCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccC
Q 047977           71 RYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTD  150 (569)
Q Consensus        71 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  150 (569)
                      ++++++++.+..++.. +.  ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+ ..|.++++|++|++++
T Consensus         3 ~~l~ls~n~l~~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKD-LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCSSCCCS-CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCccccccc-cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCC
Confidence            4678888877765432 32  778888888888776556677778888888888887774333 3457778888888888


Q ss_pred             CcccccCCcCCCCCCCCCEEEccCCccccC-CCcCcCCCCCCcEEEcccCcceecCCccccCCCCC--CEEEcccCCC--
Q 047977          151 NQFQGKLSPNVSKLSNLTVLRLATNKFSGP-IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNL--QHLDLRMNAL--  225 (569)
Q Consensus       151 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--  225 (569)
                      |.+.. ++..  .+++|++|++++|.+... .+..++.+++|++|++++|.+.+   ..+..+++|  ++|++++|.+  
T Consensus        79 N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~  152 (520)
T 2z7x_B           79 NKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG  152 (520)
T ss_dssp             SCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred             Cceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence            77763 3333  677777777777777652 34566677777777777766653   234455555  6666666665  


Q ss_pred             CcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCc-------c
Q 047977          226 NSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNS-------F  298 (569)
Q Consensus       226 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~  298 (569)
                      ....+..+..+..                       ....+.+.++.+.+.++...+..+++|+.+++++|.       +
T Consensus       153 ~~~~~~~l~~l~~-----------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  209 (520)
T 2z7x_B          153 EKEDPEGLQDFNT-----------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF  209 (520)
T ss_dssp             SSCCTTTTTTCCE-----------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHH
T ss_pred             ccccccccccccc-----------------------ceEEEEeccCcchhhhhhhhhhcccceeecccccccccccccee
Confidence            3333333333221                       111234444444444444445555666666666554       3


Q ss_pred             eeeCCccccCCCCCcEEecccccccccCCccc---cCCCCCCEEEccCCccccccCccc-----ccCCCCCEEEcccCcc
Q 047977          299 MGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEI---GKLTSLEKLDLSGNQLSGTIPPTL-----WNLTNLLSLQLFFNNL  370 (569)
Q Consensus       299 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~  370 (569)
                      .+.++ .+..+++|+.|++++|.+.+..+..+   ...++|++|++++|.+.+..+..+     .++++|+.+++++|.+
T Consensus       210 ~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~  288 (520)
T 2z7x_B          210 LSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF  288 (520)
T ss_dssp             HHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred             ecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce
Confidence            32222 45556666666666665543211111   013466667776666665555555     6666777777776665


Q ss_pred             cccCC-ccccCC---CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCcc-
Q 047977          371 SGTIP-PEIGSM---ASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG-  445 (569)
Q Consensus       371 ~~~~~-~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-  445 (569)
                        .++ ..+..+   .+|+.|++++|.+....  ....+++|+.+++++|.+++..|..+..++ +|++|++++|.+.+ 
T Consensus       289 --~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~l  363 (520)
T 2z7x_B          289 --GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLT-ELETLILQMNQLKEL  363 (520)
T ss_dssp             --CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCS-SCCEEECCSSCCCBH
T ss_pred             --ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCC-CCCEEEccCCccCcc
Confidence              222 222222   45777777777665321  125677788888888887776777776666 88888888888875 


Q ss_pred             -ccChhhhCCCCCcEEEccCCcceeeCCc-cccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCc
Q 047977          446 -ELPYELCSGFALEELTVNGNNFTGSLPA-CMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDW  523 (569)
Q Consensus       446 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l  523 (569)
                       .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++..+..+.  ++|++|++++|.++ .+|..+
T Consensus       364 ~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~  440 (520)
T 2z7x_B          364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQV  440 (520)
T ss_dssp             HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGG
T ss_pred             ccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhh
Confidence             4556788889999999999999864554 478889999999999999877776654  79999999999988 778888


Q ss_pred             ccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccC
Q 047977          524 GECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKN  567 (569)
Q Consensus       524 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  567 (569)
                      ..+++|+.|++++|++++..+..+..+++|++|++++|+++++-
T Consensus       441 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             hcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence            89999999999999999544444889999999999999998753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.9e-43  Score=368.50  Aligned_cols=433  Identities=18%  Similarity=0.242  Sum_probs=210.5

Q ss_pred             CCCcEEEcccccccccCCccccCCCCCCEEEcccCcc------cc------CCchhhhhcCCCCcEEeccCCcccccCCc
Q 047977           92 PSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKL------SG------LIPERLFTNLGKLEYLNLTDNQFQGKLSP  159 (569)
Q Consensus        92 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~------~~------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  159 (569)
                      .+++.|+++++.+.+.+|..++++++|++|++++|.+      .+      .+|...   +..++ +++..+.+.+..+.
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~  156 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRE  156 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchh
Confidence            4677777777777777777777778888888877754      11      222221   22333 33333333222222


Q ss_pred             CCC-------------------CCCCCCEEEcc--CCccccCCCcCcCCCCCCcEEEcccCcceec--------------
Q 047977          160 NVS-------------------KLSNLTVLRLA--TNKFSGPIPGDIGLMSNIQLVELFNNSFTGQ--------------  204 (569)
Q Consensus       160 ~l~-------------------~~~~L~~L~l~--~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--------------  204 (569)
                      .+.                   ....++.+.+.  ++.+++ .|..++.+++|++|++++|.+.+.              
T Consensus       157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  235 (636)
T 4eco_A          157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA  235 (636)
T ss_dssp             GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred             hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence            111                   01112222221  233433 344455555555555555555542              


Q ss_pred             ---CCcccc--CCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEccccc-cee-ccCccCcCC------CCCCEEeCcCC
Q 047977          205 ---IPSSLG--QLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQ-LSG-GLPLSLSNL------SRLNELGLSDN  271 (569)
Q Consensus       205 ---~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~-~~~~~l~~~------~~L~~L~l~~~  271 (569)
                         +|..+.  .+++|++|++++|.+....+..++.+++|+++++++|. ++. ..+..+..+      ++|+.|++++|
T Consensus       236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n  315 (636)
T 4eco_A          236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN  315 (636)
T ss_dssp             HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred             cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence               555555  55555555555555555555555555555555555555 443 333333332      55555555555


Q ss_pred             cCccccCc-cccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCC-CCEEEccCCccccc
Q 047977          272 FLSGEISA-NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTS-LEKLDLSGNQLSGT  349 (569)
Q Consensus       272 ~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~  349 (569)
                      .+. .++. ..++.+++|+.|++++|.+.+.+| .+..+++|+.|++++|.++ .+|..+..+++ |++|++++|.+. .
T Consensus       316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~  391 (636)
T 4eco_A          316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-Y  391 (636)
T ss_dssp             CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-S
T ss_pred             cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-c
Confidence            555 3433 124555555555555555554444 4555555555555555555 44444555555 555555555555 3


Q ss_pred             cCcccccCC--CCCEEEcccCcccccCCcccc-------CCCCCCEEEccCCcccccCCc-cccCCCCCCEEEccCCccc
Q 047977          350 IPPTLWNLT--NLLSLQLFFNNLSGTIPPEIG-------SMASLVAFDVNTNQLHGELPE-NISRLVNLNKFSVFTNNFS  419 (569)
Q Consensus       350 ~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~  419 (569)
                      ++..+...+  +|++|++++|.+.+..+..+.       .+++|+.|++++|.+. .+|. .+..+++|+.|++++|.++
T Consensus       392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC
Confidence            444443322  555555555555544444444       4445555555555554 2222 2333455555555555554


Q ss_pred             ccCCchhhccCC-------CCceEEcccCcCccccChhhh--CCCCCcEEEccCCcceeeCCccccCCCCCcEEEc----
Q 047977          420 GSIPGDFGKFSP-------SLINVSFSNNSFSGELPYELC--SGFALEELTVNGNNFTGSLPACMRNCSNLNRVRF----  486 (569)
Q Consensus       420 ~~~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l----  486 (569)
                       .+|........       +|+.|++++|.+. .+|..+.  .+++|+.|++++|++++ +|..+.++++|++|++    
T Consensus       471 -~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~  547 (636)
T 4eco_A          471 -EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR  547 (636)
T ss_dssp             -BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB
T ss_pred             -CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc
Confidence             33332222111       4455555555544 3444443  44455555555555543 4444444555555555    


Q ss_pred             --cCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcce
Q 047977          487 --DGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS  540 (569)
Q Consensus       487 --~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  540 (569)
                        ++|.+.+.+|..++.+++|++|++++|++ +.+|..+.  ++|+.|++++|++.
T Consensus       548 ~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence              22334444444444445555555555544 23344333  44555555555444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-42  Score=357.87  Aligned_cols=451  Identities=19%  Similarity=0.239  Sum_probs=242.3

Q ss_pred             CEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccc
Q 047977           23 TFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYN  102 (569)
Q Consensus        23 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  102 (569)
                      ++|+++++.++ .+|..+.  ++|++|++++|.+.+..|..|.++++|++|++++|.+....+..|+.+++|++|++++|
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            57888888888 4666555  78888888888888777778888888888888888888777777888888888888888


Q ss_pred             cccccCCccccCCCCCCEEEcccCcccc-CCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCC--CEEEccCCcc--
Q 047977          103 ELTLEFPSFILTCRNLTYLDLSLNKLSG-LIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNL--TVLRLATNKF--  177 (569)
Q Consensus       103 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--  177 (569)
                      .+. .+|..  .+++|++|++++|.+++ .+|. .|.++++|++|++++|.+.+   ..+..+++|  +.|++++|.+  
T Consensus        80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~  152 (520)
T 2z7x_B           80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG  152 (520)
T ss_dssp             CCC-EEECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred             cee-ecCcc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence            877 44544  67788888888887764 2333 34777788888887777654   344555555  7777776665  


Q ss_pred             ccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcC-CCcCCcCCCCCCEEEccccc-------c
Q 047977          178 SGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNST-IPPELGLCTNLSFLALAMNQ-------L  249 (569)
Q Consensus       178 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~-------~  249 (569)
                      ....+..+..+.. +                      ...+++++|.+... ....+..+++|+.+++++|.       +
T Consensus       153 ~~~~~~~l~~l~~-~----------------------~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  209 (520)
T 2z7x_B          153 EKEDPEGLQDFNT-E----------------------SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF  209 (520)
T ss_dssp             SSCCTTTTTTCCE-E----------------------EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHH
T ss_pred             ccccccccccccc-c----------------------eEEEEeccCcchhhhhhhhhhcccceeecccccccccccccee
Confidence            3333433333321 1                      11233333333221 12234445555555555543       2


Q ss_pred             eeccCccCcCCCCCCEEeCcCCcCccccCcccc--CCCCCCcEEEccCCcceeeCCccc-----cCCCCCcEEecccccc
Q 047977          250 SGGLPLSLSNLSRLNELGLSDNFLSGEISANLI--GNWTELESLQIQNNSFMGNIPPEI-----GLLTKLQYLFLYRNHF  322 (569)
Q Consensus       250 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~  322 (569)
                      .+..+ .+..+++|+.|+++++.+.+.......  ...++|+.+++++|.+.+.+|..+     ..+++|+.+++++|.+
T Consensus       210 ~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~  288 (520)
T 2z7x_B          210 LSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF  288 (520)
T ss_dssp             HHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred             ecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce
Confidence            22222 344555566666555544422111100  012456666666665554455444     5555555555555555


Q ss_pred             cccCC-ccccCC---CCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccc--
Q 047977          323 SGPIP-SEIGKL---TSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHG--  396 (569)
Q Consensus       323 ~~~~~-~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--  396 (569)
                        .+| ..+..+   .+|+.|++++|.+....  .+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+  
T Consensus       289 --~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  364 (520)
T 2z7x_B          289 --GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS  364 (520)
T ss_dssp             --CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH
T ss_pred             --ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc
Confidence              222 222222   34555555555543221  11345555555555555554444455555555555555555543  


Q ss_pred             cCCccccCCCCCCEEEccCCcccccCCch-hhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccc
Q 047977          397 ELPENISRLVNLNKFSVFTNNFSGSIPGD-FGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACM  475 (569)
Q Consensus       397 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  475 (569)
                      .+|..+..+++|+.|++++|.+++.+|.. +..+ ++|+.|++++|.+++..+..+.  ++|+.|++++|+++ .+|..+
T Consensus       365 ~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~  440 (520)
T 2z7x_B          365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT-KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQV  440 (520)
T ss_dssp             HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC-TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGG
T ss_pred             cchHHHhhCCCCCEEECCCCcCCcccccchhccC-ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhh
Confidence            23334445555555555555554433332 2222 2444444444444433332221  34444444444444 344434


Q ss_pred             cCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcc
Q 047977          476 RNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHF  515 (569)
Q Consensus       476 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  515 (569)
                      ..+++|++|++++|.++...+..+..+++|++|++++|++
T Consensus       441 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             hcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC
Confidence            4444444444444444422222244444444444444444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6.8e-41  Score=354.22  Aligned_cols=510  Identities=21%  Similarity=0.184  Sum_probs=377.2

Q ss_pred             CCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEc
Q 047977           20 SNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL   99 (569)
Q Consensus        20 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l   99 (569)
                      +++++|++++|.++.+.+.+|.++++|++|++++|++++..+.+|.++++|++|++++|.+.......|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            47899999999998777788999999999999999888777778889999999999999888888888889999999999


Q ss_pred             ccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCC----CCEEEccCC
Q 047977          100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSN----LTVLRLATN  175 (569)
Q Consensus       100 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~----L~~L~l~~~  175 (569)
                      ++|.+.+..+..++.+++|++|++++|.+.+......+..+++|++|++++|.+.+..+..+..+.+    ...++++.+
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  211 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence            9998886666678889999999999998865433344578889999999999887666666554433    346777777


Q ss_pred             ccccCCCcCcCCCCCCcEEEcccCcce-ecCCccccCCCCCCEEEcccCCC------CcCCCcCCcCCCCCCEEEccccc
Q 047977          176 KFSGPIPGDIGLMSNIQLVELFNNSFT-GQIPSSLGQLKNLQHLDLRMNAL------NSTIPPELGLCTNLSFLALAMNQ  248 (569)
Q Consensus       176 ~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~------~~~~~~~~~~~~~L~~l~l~~~~  248 (569)
                      .+....+..+ ....++.+++.++... ...+..+..+..++...+..+..      .......+.....+....+..+.
T Consensus       212 ~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~  290 (635)
T 4g8a_A          212 PMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  290 (635)
T ss_dssp             CCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred             cccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence            7765444333 3345666777665432 12233455566666655543221      12222334444555554444332


Q ss_pred             ce---eccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEeccccccccc
Q 047977          249 LS---GGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGP  325 (569)
Q Consensus       249 ~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  325 (569)
                      ..   ......+....+++.+.+.++.+... ..  +.....++.+++.++.+....+   ..++.|+.+.+.++.....
T Consensus       291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~--~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~  364 (635)
T 4g8a_A          291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-KD--FSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA  364 (635)
T ss_dssp             CCSCEEECTTTTGGGTTCSEEEEESCEEEEC-GG--GGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB
T ss_pred             hcccccchhhhhhhhcccccccccccccccc-cc--cccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC
Confidence            21   12334456677888888888776532 22  4556788999998887764322   3467788888888876633


Q ss_pred             CCccccCCCCCCEEEccCCccccc--cCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccC-Cccc
Q 047977          326 IPSEIGKLTSLEKLDLSGNQLSGT--IPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL-PENI  402 (569)
Q Consensus       326 ~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~  402 (569)
                        .....+++|+.+++++|.+...  .+..+..+.+|+.+++..+... .....+..++.|+.+++..+...... ...+
T Consensus       365 --~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~  441 (635)
T 4g8a_A          365 --FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF  441 (635)
T ss_dssp             --CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred             --cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccc
Confidence              2345688999999999887532  3455667888999999988876 34556778889999999887766443 2457


Q ss_pred             cCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCc-cccChhhhCCCCCcEEEccCCcceeeCCccccCCCCC
Q 047977          403 SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFS-GELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNL  481 (569)
Q Consensus       403 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  481 (569)
                      ..+.+++.++++.|.+....+..+...+ .++.|++++|... ...|..+..+++|++|++++|++++..|..|.++++|
T Consensus       442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~-~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L  520 (635)
T 4g8a_A          442 LSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  520 (635)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ccccccccccccccccccccccccccch-hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence            7888999999999998877777776666 9999999998743 3466677888999999999999987778889999999


Q ss_pred             cEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccC-CCCCEEECCCCcce
Q 047977          482 NRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGEC-RNLSNLQLDRNKIS  540 (569)
Q Consensus       482 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~n~~~  540 (569)
                      ++|+|++|.+++..+..|+.+++|++|++++|++++..|..++.+ ++|+.|++++|++.
T Consensus       521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            999999999988888889999999999999999998888888887 68999999988665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.5e-43  Score=367.02  Aligned_cols=455  Identities=18%  Similarity=0.278  Sum_probs=304.4

Q ss_pred             CCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCC------C-----CCCCcEEEcccccccccCCccc
Q 047977           44 SELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFS------N-----MPSLTHLSLCYNELTLEFPSFI  112 (569)
Q Consensus        44 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~------~-----~~~L~~L~l~~~~~~~~~~~~l  112 (569)
                      .+++.|+++++.+.+.+|.++.++++|++|++++|.+.... ..++      .     +.+|+ ++++++.+.+..+..+
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~-~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~~  158 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNE-RLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDF  158 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTC-CSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGGS
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCC-ccccccccccCchHHHHHHHH-hhHHHhhhccCchhhH
Confidence            57899999999999889999999999999999988542111 0011      1     22344 5555555443333332


Q ss_pred             cCC-CCCCEEEcccCccccCCchhhhhcCCCCcEEecc--CCcccccCCcCCCCCCCCCEEEccCCccccC---------
Q 047977          113 LTC-RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLT--DNQFQGKLSPNVSKLSNLTVLRLATNKFSGP---------  180 (569)
Q Consensus       113 ~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---------  180 (569)
                      ..+ ..+..+++....+.       ......++.+.+.  .|.+++ +|..++++++|++|++++|.+++.         
T Consensus       159 ~~~~~~l~~~~l~~~~~~-------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  230 (636)
T 4eco_A          159 SDLIKDCINSDPQQKSIK-------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE  230 (636)
T ss_dssp             CHHHHHHHHHCTTSCCCC-------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred             HHHHHHHhhcCccccccc-------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence            210 01111111100000       0001111111111  344544 555566666666666666665542         


Q ss_pred             --------CCcCcC--CCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCC-CCc-CCCcCCcCC------CCCCEE
Q 047977          181 --------IPGDIG--LMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA-LNS-TIPPELGLC------TNLSFL  242 (569)
Q Consensus       181 --------~~~~l~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~------~~L~~l  242 (569)
                              .|..+.  .+++|++|++++|.+.+.+|..+..+++|++|++++|. +.. ..+..++.+      ++|+++
T Consensus       231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L  310 (636)
T 4eco_A          231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII  310 (636)
T ss_dssp             TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred             ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence                    555555  66666666666666666666666666777777777666 554 344444443      677777


Q ss_pred             EcccccceeccCc--cCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCC-CcEEeccc
Q 047977          243 ALAMNQLSGGLPL--SLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTK-LQYLFLYR  319 (569)
Q Consensus       243 ~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~  319 (569)
                      ++++|.++ .++.  .+..+++|+.|++++|.+.+.++  .+..+++|+.|++++|.+. .+|..+..+++ |++|++++
T Consensus       311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~  386 (636)
T 4eco_A          311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH  386 (636)
T ss_dssp             ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred             ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence            77777776 5555  66777777777777777776666  3667777888888877777 66666777777 88888888


Q ss_pred             ccccccCCccccCCC--CCCEEEccCCccccccCcccc-------cCCCCCEEEcccCcccccCCccccCCCCCCEEEcc
Q 047977          320 NHFSGPIPSEIGKLT--SLEKLDLSGNQLSGTIPPTLW-------NLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVN  390 (569)
Q Consensus       320 ~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  390 (569)
                      |.++ .+|..+...+  +|++|++++|.+....+..+.       .+++|++|++++|.++......+..+++|+.|+++
T Consensus       387 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls  465 (636)
T 4eco_A          387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM  465 (636)
T ss_dssp             SCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECC
T ss_pred             CcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECC
Confidence            8777 6666665543  788888888887766666666       66788888888888774433445567888888888


Q ss_pred             CCcccccCCcc-ccC-------CCCCCEEEccCCcccccCCchhh--ccCCCCceEEcccCcCccccChhhhCCCCCcEE
Q 047977          391 TNQLHGELPEN-ISR-------LVNLNKFSVFTNNFSGSIPGDFG--KFSPSLINVSFSNNSFSGELPYELCSGFALEEL  460 (569)
Q Consensus       391 ~~~~~~~~~~~-~~~-------l~~L~~l~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  460 (569)
                      +|.+. .+|.. +..       +++|+.|++++|.++ .+|..+.  .++ +|+.|++++|++.+ +|..+..+++|+.|
T Consensus       466 ~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~-~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L  541 (636)
T 4eco_A          466 GNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP-YLVGIDLSYNSFSK-FPTQPLNSSTLKGF  541 (636)
T ss_dssp             SSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT-TCCEEECCSSCCSS-CCCGGGGCSSCCEE
T ss_pred             CCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC-CcCEEECCCCCCCC-cChhhhcCCCCCEE
Confidence            88877 44433 222       238889999998888 6777776  555 89999999999886 78888889999999


Q ss_pred             Ec------cCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCC
Q 047977          461 TV------NGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEIS  520 (569)
Q Consensus       461 ~l------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  520 (569)
                      ++      ++|++.+..|..+.++++|++|++++|.+. .+|..+.  ++|++|++++|++.....
T Consensus       542 ~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             ECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred             ECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccH
Confidence            99      567778789999999999999999999994 6776654  899999999998875443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.9e-41  Score=355.98  Aligned_cols=345  Identities=18%  Similarity=0.284  Sum_probs=197.4

Q ss_pred             ccCCCCCCCcEEEcccccccc-----------------cCCcccc--CCCCCCEEEcccCccccCCchhhhhcCCCCcEE
Q 047977           86 SKFSNMPSLTHLSLCYNELTL-----------------EFPSFIL--TCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYL  146 (569)
Q Consensus        86 ~~~~~~~~L~~L~l~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  146 (569)
                      ..|+.+++|++|++++|.+.+                 .+|..++  .+++|++|++++|.+.+.+|.. +.++++|++|
T Consensus       442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L  520 (876)
T 4ecn_A          442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSL  520 (876)
T ss_dssp             GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEE
T ss_pred             HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEE
Confidence            345555556666665555554                 1555544  5666666666666555555533 3555666666


Q ss_pred             eccCCc-ccc-cCCcC-------CCCCCCCCEEEccCCccccCCCc--CcCCCCCCcEEEcccCcceecCCccccCCCCC
Q 047977          147 NLTDNQ-FQG-KLSPN-------VSKLSNLTVLRLATNKFSGPIPG--DIGLMSNIQLVELFNNSFTGQIPSSLGQLKNL  215 (569)
Q Consensus       147 ~l~~~~-~~~-~~~~~-------l~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L  215 (569)
                      ++++|+ +.+ .+|..       +..+++|+.|++++|.+. ..+.  .+..+++|+.|++++|.+. .+| .+..+++|
T Consensus       521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L  597 (876)
T 4ecn_A          521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL  597 (876)
T ss_dssp             ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred             ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence            666665 443 23322       223346666666666665 4444  5566666666666666665 455 55666666


Q ss_pred             CEEEcccCCCCcCCCcCCcCCCC-CCEEEcccccceeccCccCcCCC--CCCEEeCcCCcCccccCccc--cC--CCCCC
Q 047977          216 QHLDLRMNALNSTIPPELGLCTN-LSFLALAMNQLSGGLPLSLSNLS--RLNELGLSDNFLSGEISANL--IG--NWTEL  288 (569)
Q Consensus       216 ~~L~l~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~--~~--~~~~L  288 (569)
                      ++|++++|.+. ..+..+..+++ |+.|++++|.++ .++..+...+  +|+.|++++|.+.+.++...  ..  ..++|
T Consensus       598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L  675 (876)
T 4ecn_A          598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA  675 (876)
T ss_dssp             SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred             eEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence            66666666665 44455666666 666666666665 4444444433  36667777666654333210  11  33467


Q ss_pred             cEEEccCCcceeeCCcc-ccCCCCCcEEecccccccccCCccccC--------CCCCCEEEccCCccccccCcccc--cC
Q 047977          289 ESLQIQNNSFMGNIPPE-IGLLTKLQYLFLYRNHFSGPIPSEIGK--------LTSLEKLDLSGNQLSGTIPPTLW--NL  357 (569)
Q Consensus       289 ~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~--------~~~L~~L~l~~~~~~~~~~~~~~--~~  357 (569)
                      +.|++++|.+. .+|.. +..+++|+.|++++|.+. .+|..+..        +++|++|++++|.+. .++..+.  .+
T Consensus       676 ~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l  752 (876)
T 4ecn_A          676 STVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL  752 (876)
T ss_dssp             EEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTC
T ss_pred             CEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccC
Confidence            77777777776 34433 336677777777777776 44433222        237888888888777 5566665  77


Q ss_pred             CCCCEEEcccCcccccCCccccCCCCCCEEEccC------CcccccCCccccCCCCCCEEEccCCcccccCCchhhccCC
Q 047977          358 TNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNT------NQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSP  431 (569)
Q Consensus       358 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~  431 (569)
                      ++|+.|++++|.+++ ++..+..+++|+.|++++      |.+.+.+|..+..+++|+.|++++|.+ +.+|..+.   +
T Consensus       753 ~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~---~  827 (876)
T 4ecn_A          753 PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT---P  827 (876)
T ss_dssp             TTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC---S
T ss_pred             CCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc---C
Confidence            788888888887774 566677777777777766      444444444454555555555555544 33443322   2


Q ss_pred             CCceEEcccCcCc
Q 047977          432 SLINVSFSNNSFS  444 (569)
Q Consensus       432 ~L~~L~l~~~~~~  444 (569)
                      +|+.|++++|++.
T Consensus       828 ~L~~LdLs~N~l~  840 (876)
T 4ecn_A          828 QLYILDIADNPNI  840 (876)
T ss_dssp             SSCEEECCSCTTC
T ss_pred             CCCEEECCCCCCC
Confidence            4444444444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.1e-40  Score=350.42  Aligned_cols=354  Identities=20%  Similarity=0.252  Sum_probs=279.8

Q ss_pred             CcceecCCccccCCCCCCEEEcccCCCCc-----------------CCCcCCc--CCCCCCEEEcccccceeccCccCcC
Q 047977          199 NSFTGQIPSSLGQLKNLQHLDLRMNALNS-----------------TIPPELG--LCTNLSFLALAMNQLSGGLPLSLSN  259 (569)
Q Consensus       199 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~l~~  259 (569)
                      |.+.+ +|..+..+++|++|++++|.+..                 ..|..++  .+++|+.|++++|.+....+..+.+
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            55665 78888888888888888888876                 2666666  8888999999888888788888888


Q ss_pred             CCCCCEEeCcCCc-Ccc-ccCcc------ccCCCCCCcEEEccCCcceeeCCc--cccCCCCCcEEecccccccccCCcc
Q 047977          260 LSRLNELGLSDNF-LSG-EISAN------LIGNWTELESLQIQNNSFMGNIPP--EIGLLTKLQYLFLYRNHFSGPIPSE  329 (569)
Q Consensus       260 ~~~L~~L~l~~~~-~~~-~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~  329 (569)
                      +++|+.|++++|. +.+ .++..      .+..+++|+.|++++|.+. .+|.  .+..+++|+.|++++|.++ .+| .
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~  590 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A  590 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence            8899999998887 665 44432      2345568999999988888 6777  7888889999999998888 676 7


Q ss_pred             ccCCCCCCEEEccCCccccccCcccccCCC-CCEEEcccCcccccCCccccCCCC--CCEEEccCCcccccCCcc---cc
Q 047977          330 IGKLTSLEKLDLSGNQLSGTIPPTLWNLTN-LLSLQLFFNNLSGTIPPEIGSMAS--LVAFDVNTNQLHGELPEN---IS  403 (569)
Q Consensus       330 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~---~~  403 (569)
                      +..+++|+.|++++|.+. .++..+..+++ |+.|++++|.++ .++..+...+.  |+.|++++|.+.+.+|..   +.
T Consensus       591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~  668 (876)
T 4ecn_A          591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD  668 (876)
T ss_dssp             CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred             hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence            888889999999999888 67777888888 999999999887 66666665544  889999998887654422   22


Q ss_pred             --CCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCC--------CCCcEEEccCCcceeeCCc
Q 047977          404 --RLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSG--------FALEELTVNGNNFTGSLPA  473 (569)
Q Consensus       404 --~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--------~~L~~L~l~~~~~~~~~~~  473 (569)
                        .+++|+.|++++|.++ .+|..+....++|+.|++++|.+. .+|..+...        ++|+.|++++|+++ .+|.
T Consensus       669 ~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~  745 (876)
T 4ecn_A          669 DYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD  745 (876)
T ss_dssp             TCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG
T ss_pred             cccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchH
Confidence              3458889999999888 566666533348999999999887 666555443        28999999999888 7777


Q ss_pred             ccc--CCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcC------CcccccCCcCcccCCCCCEEECCCCcceecCCc
Q 047977          474 CMR--NCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSG------NHFIGEISPDWGECRNLSNLQLDRNKISGGIPA  545 (569)
Q Consensus       474 ~l~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~------~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~  545 (569)
                      .+.  .+++|+.|+|++|.+.+ +|..++.+++|+.|++++      |.+.+.+|..+..+++|+.|++++|++ +.+|.
T Consensus       746 ~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~  823 (876)
T 4ecn_A          746 DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE  823 (876)
T ss_dssp             GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred             HhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence            776  88999999999998886 677788899999998876      677778888899999999999999998 56777


Q ss_pred             CccCCCCCCeEeCcCCcCcc
Q 047977          546 ELGNLTRLGVLSLDSNELTG  565 (569)
Q Consensus       546 ~l~~l~~L~~L~l~~n~~~~  565 (569)
                      .+.  ++|+.|++++|++..
T Consensus       824 ~l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          824 KLT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             CCC--SSSCEEECCSCTTCE
T ss_pred             hhc--CCCCEEECCCCCCCc
Confidence            765  689999999998854

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.7e-40  Score=340.89  Aligned_cols=458  Identities=17%  Similarity=0.153  Sum_probs=285.4

Q ss_pred             CCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEe
Q 047977           68 RKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLN  147 (569)
Q Consensus        68 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  147 (569)
                      ...++++++++.+..++.. +.  ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+ ..|.++++|++|+
T Consensus        31 ~~~~~l~ls~~~L~~ip~~-~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~  106 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPKD-LP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYLD  106 (562)
T ss_dssp             --CCEEECTTSCCCSCCTT-SC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCCCccCCCC-CC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEEE
Confidence            3446777777777664432 22  677777777777765555667777777777777777663323 3346677777777


Q ss_pred             ccCCcccccCCcCCCCCCCCCEEEccCCccccCC-CcCcCCCCCCcEEEcccCcceecCCccccCCCCC--CEEEcccCC
Q 047977          148 LTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPI-PGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNL--QHLDLRMNA  224 (569)
Q Consensus       148 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~  224 (569)
                      +++|.+.. ++..  .+++|++|++++|.+.... +..+..+++|++|+++++.+...   .+..+++|  ++|++++|.
T Consensus       107 Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          107 VSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             CTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred             CCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence            77776663 3333  5667777777776665432 34556666666666666655432   23333333  666666555


Q ss_pred             C--CcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcc----
Q 047977          225 L--NSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSF----  298 (569)
Q Consensus       225 ~--~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----  298 (569)
                      +  ....+..+..+.. +                     .+ .+.++++.+.+.++...+..+++|+.+++++|..    
T Consensus       181 l~~~~~~~~~l~~l~~-~---------------------~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  237 (562)
T 3a79_B          181 YHIKGGETESLQIPNT-T---------------------VL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR  237 (562)
T ss_dssp             CCCCSSSCCEEEECCE-E---------------------EE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHH
T ss_pred             ccccccCcccccccCc-c---------------------eE-EEEecCccchhhhhhhcccccceEEEecccccccccch
Confidence            5  3333333322210 0                     11 2344444444444444455566666666665531    


Q ss_pred             eeeCCccccCCCCCcEEeccccccccc----CCccccCCCCCCEEEccCCccccccCccc-----ccCCCCCEEEcccCc
Q 047977          299 MGNIPPEIGLLTKLQYLFLYRNHFSGP----IPSEIGKLTSLEKLDLSGNQLSGTIPPTL-----WNLTNLLSLQLFFNN  369 (569)
Q Consensus       299 ~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~  369 (569)
                      .......+..++.|+.+++.++.+.+.    .+.. ...++|++|++++|.+.+.++..+     .+++.|+.+++..+.
T Consensus       238 l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~  316 (562)
T 3a79_B          238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV  316 (562)
T ss_dssp             HHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC
T ss_pred             HHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccce
Confidence            001112344556666666665544321    1111 122366677777666664555444     344444444444444


Q ss_pred             ccccCC-cccc---CCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCcc
Q 047977          370 LSGTIP-PEIG---SMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG  445 (569)
Q Consensus       370 ~~~~~~-~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  445 (569)
                      +  .++ ..+.   ...+++.+++++|.+....  ....+++|+.+++++|.+++..|..+..++ +|++|++++|.+.+
T Consensus       317 ~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~  391 (562)
T 3a79_B          317 F--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLK-RLQTLILQRNGLKN  391 (562)
T ss_dssp             C--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCS-SCCEEECCSSCCCB
T ss_pred             e--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccC-CCCEEECCCCCcCC
Confidence            3  111 1111   1246777777777765221  125677888888888888877777777766 88888888888874


Q ss_pred             --ccChhhhCCCCCcEEEccCCcceeeCCc-cccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcC
Q 047977          446 --ELPYELCSGFALEELTVNGNNFTGSLPA-CMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPD  522 (569)
Q Consensus       446 --~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  522 (569)
                        .++..+..+++|+.|++++|.+++.+|. .+..+++|++|++++|.+++..+..+.  ++|++|++++|.++ .+|..
T Consensus       392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~  468 (562)
T 3a79_B          392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKD  468 (562)
T ss_dssp             TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTT
T ss_pred             cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChh
Confidence              2345677889999999999999864554 578899999999999999876665543  79999999999988 67777


Q ss_pred             cccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccC
Q 047977          523 WGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKN  567 (569)
Q Consensus       523 l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  567 (569)
                      +..+++|+.|++++|++++..+..+..+++|++|++++|++.++.
T Consensus       469 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             TTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred             hcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence            779999999999999999544444899999999999999998764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.4e-39  Score=335.48  Aligned_cols=459  Identities=19%  Similarity=0.205  Sum_probs=213.6

Q ss_pred             CCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEc
Q 047977           20 SNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL   99 (569)
Q Consensus        20 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l   99 (569)
                      ...++++++++.++. +|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+....+..|.++++|++|++
T Consensus        31 ~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           31 ELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             --CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            334556666655552 444333  45566666666555444455555566666666666555555555555555555555


Q ss_pred             ccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCC--CEEEccCCcc
Q 047977          100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNL--TVLRLATNKF  177 (569)
Q Consensus       100 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~  177 (569)
                      ++|.+. .+|..  .+++|++|++++|.+++.-....|.++++|++|++++|.+...   .+..+++|  +.|++++|.+
T Consensus       108 s~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          108 SHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             TTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred             CCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence            555555 33333  4555555555555554311112235555555555555554431   22223333  5555555444


Q ss_pred             ccCCCcCcCCCCCCcEEEcccCcceecCCccccCCC-CCCEEEcccCCCCcCCC-cCCcCCCCCCEEEcccccce----e
Q 047977          178 SGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLK-NLQHLDLRMNALNSTIP-PELGLCTNLSFLALAMNQLS----G  251 (569)
Q Consensus       178 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~----~  251 (569)
                      ..                      ....+..+..+. ..-.+++++|.+....+ ..+..+++|+.++++++...    .
T Consensus       182 ~~----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~  239 (562)
T 3a79_B          182 HI----------------------KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM  239 (562)
T ss_dssp             CC----------------------CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHH
T ss_pred             cc----------------------cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHH
Confidence            00                      333333333322 01123344444332211 12334455555555544210    0


Q ss_pred             ccCccCcCCCCCCEEeCcCCcCccccCccc--cCCCCCCcEEEccCCcceeeCCccc-----cCCCCCcEEecccccccc
Q 047977          252 GLPLSLSNLSRLNELGLSDNFLSGEISANL--IGNWTELESLQIQNNSFMGNIPPEI-----GLLTKLQYLFLYRNHFSG  324 (569)
Q Consensus       252 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~  324 (569)
                      .....+..++.|+.+.+.++.+.+......  ....++|+.|++++|.+.+.+|..+     ..++.|+.+++..+.+  
T Consensus       240 ~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--  317 (562)
T 3a79_B          240 TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--  317 (562)
T ss_dssp             HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--
T ss_pred             HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--
Confidence            111223444555555555444332111000  1112356666666665554444443     3333333333333333  


Q ss_pred             cCC-cccc---CCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccc--cC
Q 047977          325 PIP-SEIG---KLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHG--EL  398 (569)
Q Consensus       325 ~~~-~~l~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~  398 (569)
                      .+| ..+.   ...+|++|++++|.+....  ....+++|++|++++|.+++..+..+..+++|+.|++++|.+.+  .+
T Consensus       318 ~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  395 (562)
T 3a79_B          318 LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV  395 (562)
T ss_dssp             SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHH
T ss_pred             ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccc
Confidence            111 1111   1134666666665553221  11445556666666666555455555555666666666655553  12


Q ss_pred             CccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCC
Q 047977          399 PENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNC  478 (569)
Q Consensus       399 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  478 (569)
                      +..+..+++|+.+++++|.+++.+|.......++|++|++++|.+++..+..+.  ++|+.|++++|+++ .+|..+.++
T Consensus       396 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l  472 (562)
T 3a79_B          396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHL  472 (562)
T ss_dssp             HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSS
T ss_pred             hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCC
Confidence            234555556666666666555434433222223555555555555443333222  45555555555555 444444455


Q ss_pred             CCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCccc
Q 047977          479 SNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFI  516 (569)
Q Consensus       479 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  516 (569)
                      ++|++|++++|.++...+..++.+++|++|++++|++.
T Consensus       473 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          473 QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             CCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             CCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence            55555555555555322223555555555555555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.4e-38  Score=318.97  Aligned_cols=382  Identities=19%  Similarity=0.166  Sum_probs=279.5

Q ss_pred             EEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCC-cCCCcCCcCCCCCCEEEcccc
Q 047977          169 VLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN-STIPPELGLCTNLSFLALAMN  247 (569)
Q Consensus       169 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~  247 (569)
                      .++.+++.+.. .|.   -.+++++|++++|.+.+..+..+..+++|++|++++|.+. ...+..++.+++|++|++++|
T Consensus        14 ~~~c~~~~l~~-lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           14 NAICINRGLHQ-VPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             EEECCSSCCSS-CCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             ccCcCCCCccc-CCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            45566655543 233   2367888888888887777777888888888888888775 344566777888888888888


Q ss_pred             cceeccCccCcCCCCCCEEeCcCCcCccccC-ccccCCCCCCcEEEccCCcceeeCCcc-ccCCCCCcEEeccccccccc
Q 047977          248 QLSGGLPLSLSNLSRLNELGLSDNFLSGEIS-ANLIGNWTELESLQIQNNSFMGNIPPE-IGLLTKLQYLFLYRNHFSGP  325 (569)
Q Consensus       248 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~  325 (569)
                      .++...+..+.++++|+.|++++|.+.+..+ ...+..+++|+.|++++|.+.+..|.. +..+++|++|++++|.+.+.
T Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A           90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            8777767777777888888888877764322 233666777777777777776555544 66777777777777777666


Q ss_pred             CCccccCC--CCCCEEEccCCccccccCcc--------cccCCCCCEEEcccCcccccCCccccC---CCCCCEEEccCC
Q 047977          326 IPSEIGKL--TSLEKLDLSGNQLSGTIPPT--------LWNLTNLLSLQLFFNNLSGTIPPEIGS---MASLVAFDVNTN  392 (569)
Q Consensus       326 ~~~~l~~~--~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~  392 (569)
                      .+..+..+  .+|+.|++++|.+....+..        +..+++|++|++++|.+++..+..+..   .++++.+++++|
T Consensus       170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~  249 (455)
T 3v47_A          170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS  249 (455)
T ss_dssp             CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred             ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence            55555544  56677777777665433222        224456666666666665443333322   256666666665


Q ss_pred             cccccCCccccCCCCCCEEEccCCcccccCCchhhcc-CCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeC
Q 047977          393 QLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKF-SPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSL  471 (569)
Q Consensus       393 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  471 (569)
                      ...+...              ..+.+....+..+..+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus       250 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  315 (455)
T 3v47_A          250 YNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID  315 (455)
T ss_dssp             TTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred             ccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence            5442210              0111111112222222 248999999999999888888999999999999999999888


Q ss_pred             CccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCC
Q 047977          472 PACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLT  551 (569)
Q Consensus       472 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~  551 (569)
                      +..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+..|..|..+++|+.|++++|++++..+..++.++
T Consensus       316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  395 (455)
T 3v47_A          316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT  395 (455)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC
Confidence            88999999999999999999988899999999999999999999988899999999999999999999987777889999


Q ss_pred             CCCeEeCcCCcCcccCC
Q 047977          552 RLGVLSLDSNELTGKNS  568 (569)
Q Consensus       552 ~L~~L~l~~n~~~~~~~  568 (569)
                      +|++|++++|++++..|
T Consensus       396 ~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          396 SLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TCCEEECCSSCBCCCTT
T ss_pred             cccEEEccCCCcccCCC
Confidence            99999999999999887

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.5e-36  Score=306.87  Aligned_cols=365  Identities=17%  Similarity=0.143  Sum_probs=191.5

Q ss_pred             CCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEc
Q 047977          141 GKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDL  220 (569)
Q Consensus       141 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  220 (569)
                      +++++|++++|.+.+..+..+..+++|++|++++|.+...                       ..+..+..+++|++|++
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------------i~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV-----------------------IRNNTFRGLSSLIILKL   86 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE-----------------------ECTTTTTTCTTCCEEEC
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccce-----------------------ECcccccccccCCEEeC
Confidence            4555555555555544455555555555555555544311                       12233444445555555


Q ss_pred             ccCCCCcCCCcCCcCCCCCCEEEcccccceeccC--ccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcc
Q 047977          221 RMNALNSTIPPELGLCTNLSFLALAMNQLSGGLP--LSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSF  298 (569)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  298 (569)
                      ++|.+....+..++.+++|++|++++|.+++..+  ..+..+++|+.|++++|.+.+..+...+..+++|+.|++++|.+
T Consensus        87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            5554444444444555555555555554443222  22455556666666666655443444455666666666666666


Q ss_pred             eeeCCccccCC--CCCcEEecccccccccCCcc--------ccCCCCCCEEEccCCccccccCcccccC---CCCCEEEc
Q 047977          299 MGNIPPEIGLL--TKLQYLFLYRNHFSGPIPSE--------IGKLTSLEKLDLSGNQLSGTIPPTLWNL---TNLLSLQL  365 (569)
Q Consensus       299 ~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l  365 (569)
                      .+..+..+..+  ++++.+++++|.+.+..+..        +..+++|++|++++|.+....+..+...   ++|+.+++
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            55555544443  56667777777666433222        2345677788888877766555555433   77788888


Q ss_pred             ccCcccccCCccccCCCCCCEEEccCCcccccCCcccc--CCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcC
Q 047977          366 FFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENIS--RLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSF  443 (569)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  443 (569)
                      ++|....... ....++.             ..+..+.  ..++|+.+++++|.+++..+..+..++ +|++|++++|.+
T Consensus       247 ~~~~~~~~~~-~~~~~~~-------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l  311 (455)
T 3v47_A          247 SNSYNMGSSF-GHTNFKD-------------PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEI  311 (455)
T ss_dssp             TTCTTTSCCT-TCCSSCC-------------CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCC
T ss_pred             cccccccccc-chhhhcc-------------CcccccccccccCceEEEecCccccccchhhcccCC-CCCEEECCCCcc
Confidence            7776542110 0000000             0000011  124455555555555544444444444 555555555555


Q ss_pred             ccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCc
Q 047977          444 SGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDW  523 (569)
Q Consensus       444 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l  523 (569)
                      .+..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+++..+..+
T Consensus       312 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  391 (455)
T 3v47_A          312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF  391 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             cccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh
Confidence            54444455555555666665555554445555555666666666665555555555556666666666665554444445


Q ss_pred             ccCCCCCEEECCCCcceecC
Q 047977          524 GECRNLSNLQLDRNKISGGI  543 (569)
Q Consensus       524 ~~~~~L~~L~l~~n~~~~~~  543 (569)
                      +.+++|+.|++++|+++...
T Consensus       392 ~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          392 DRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             TTCTTCCEEECCSSCBCCCT
T ss_pred             ccCCcccEEEccCCCcccCC
Confidence            55566666666666555433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2e-35  Score=295.41  Aligned_cols=394  Identities=23%  Similarity=0.272  Sum_probs=156.4

Q ss_pred             CCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCC-------------cEEeccCCcccccC
Q 047977           91 MPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL-------------EYLNLTDNQFQGKL  157 (569)
Q Consensus        91 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L-------------~~L~l~~~~~~~~~  157 (569)
                      ..+|++|+++++.+ +.+|..++++++|++|++++|.+.+.+|..+ ..+.+|             ++|+++++.+.+ +
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l   86 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSS-L   86 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence            47888888888888 4888888888889999988888877777654 555544             566666665543 2


Q ss_pred             CcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCC
Q 047977          158 SPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCT  237 (569)
Q Consensus       158 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  237 (569)
                      +.   ..++|++|++++|.+.+ .+.   ..++|+.|++++|.+.+ ++..   .++|++|++++|.+.. .+ .++.++
T Consensus        87 p~---~~~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~  153 (454)
T 1jl5_A           87 PE---LPPHLESLVASCNSLTE-LPE---LPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSS  153 (454)
T ss_dssp             CS---CCTTCSEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred             CC---CcCCCCEEEccCCcCCc-ccc---ccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence            22   12456666666655543 222   12455555555555442 1111   1455555555555543 22 355555


Q ss_pred             CCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEec
Q 047977          238 NLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFL  317 (569)
Q Consensus       238 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  317 (569)
                      +|+++++++|.++. .+..   .++|+.|++++|.+.+ ++.  ++.+++|+.+++++|.+.+ +|..   .++|++|++
T Consensus       154 ~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~~--~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l  222 (454)
T 1jl5_A          154 FLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LPE--LQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA  222 (454)
T ss_dssp             TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred             CCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Ccc--ccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence            55555555555442 1211   1345555555554442 221  4444455555555444432 2211   134444444


Q ss_pred             ccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCccccc
Q 047977          318 YRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGE  397 (569)
Q Consensus       318 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  397 (569)
                      ++|.+. .+| .                        +..+++|++|++++|.+++ ++.   .+++|+.|++++|.+.+ 
T Consensus       223 ~~n~l~-~lp-~------------------------~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-  271 (454)
T 1jl5_A          223 GNNILE-ELP-E------------------------LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-  271 (454)
T ss_dssp             CSSCCS-SCC-C------------------------CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-
T ss_pred             cCCcCC-ccc-c------------------------cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-
Confidence            444444 333 2                        4444444455554444442 111   12445555555554442 


Q ss_pred             CCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCC-CCCcEEEccCCcceeeCCcccc
Q 047977          398 LPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSG-FALEELTVNGNNFTGSLPACMR  476 (569)
Q Consensus       398 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~  476 (569)
                      +|..   .++|+.+++++|.+++. +    ..+++|+.|++++|.+.+ ++    .. ++|++|++++|++++ +|..  
T Consensus       272 l~~~---~~~L~~L~ls~N~l~~l-~----~~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~--  335 (454)
T 1jl5_A          272 LPEL---PQSLTFLDVSENIFSGL-S----ELPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL--  335 (454)
T ss_dssp             CCCC---CTTCCEEECCSSCCSEE-S----CCCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC--
T ss_pred             cCcc---cCcCCEEECcCCccCcc-c----CcCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc--
Confidence            2221   24455555555544431 0    112355555555555442 11    11 355555555555552 3322  


Q ss_pred             CCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccc--cCCcCcccC-------------CCCCEEECCCCccee
Q 047977          477 NCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIG--EISPDWGEC-------------RNLSNLQLDRNKISG  541 (569)
Q Consensus       477 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~~-------------~~L~~L~l~~n~~~~  541 (569)
                       +++|++|++++|.++. +|.   .+++|++|++++|++.+  .+|..++.+             ++|+.|++++|.+++
T Consensus       336 -~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          336 -PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             -CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred             -CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence             3455555555555552 332   24555555555555554  344444444             789999999998886


Q ss_pred             --cCCcCccCCCCCCeEeCcCCcCcccCCC
Q 047977          542 --GIPAELGNLTRLGVLSLDSNELTGKNSY  569 (569)
Q Consensus       542 --~~~~~l~~l~~L~~L~l~~n~~~~~~~~  569 (569)
                        .+|.      +++.|.+.+|.+.++.||
T Consensus       411 ~~~iP~------sl~~L~~~~~~~~~~~~~  434 (454)
T 1jl5_A          411 FPDIPE------SVEDLRMNSERVVDPYEF  434 (454)
T ss_dssp             ------------------------------
T ss_pred             cccchh------hHhheeCcCcccCCcccc
Confidence              4553      467778888888888765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=293.86  Aligned_cols=302  Identities=20%  Similarity=0.174  Sum_probs=149.9

Q ss_pred             CCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEe
Q 047977          237 TNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLF  316 (569)
Q Consensus       237 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  316 (569)
                      ++++.|++++|.++...+..+..+++|+.|++++|.+.+ +....+.++++|+.|++++|.+.+..+..+..+++|++|+
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE-eChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            345555555555554444445555555555555554442 2222244445555555555444433333344444555555


Q ss_pred             cccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccc
Q 047977          317 LYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHG  396 (569)
Q Consensus       317 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  396 (569)
                      +++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|.++.....                    
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------------------  170 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE--------------------  170 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH--------------------
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh--------------------
Confidence            555544444444444444555555555444444444444444444444444444433323                    


Q ss_pred             cCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCcccc
Q 047977          397 ELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMR  476 (569)
Q Consensus       397 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  476 (569)
                          .+..+++|+.+++++|.+.+..+..+..++ +|+.|++++|...+.++.......+|++|++++|+++...+..+.
T Consensus       171 ----~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  245 (477)
T 2id5_A          171 ----ALSHLHGLIVLRLRHLNINAIRDYSFKRLY-RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR  245 (477)
T ss_dssp             ----HHTTCTTCCEEEEESCCCCEECTTCSCSCT-TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT
T ss_pred             ----HhcccCCCcEEeCCCCcCcEeChhhcccCc-ccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc
Confidence                344445555555555544444333444443 555555555544444444444444555555555555522223455


Q ss_pred             CCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeE
Q 047977          477 NCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVL  556 (569)
Q Consensus       477 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  556 (569)
                      ++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|+.|++++|.+++..+..+..+++|++|
T Consensus       246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  325 (477)
T 2id5_A          246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL  325 (477)
T ss_dssp             TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEE
T ss_pred             CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEE
Confidence            55555555555555555445555555555555555555555555555555555555555555555444445555555555


Q ss_pred             eCcCCcCc
Q 047977          557 SLDSNELT  564 (569)
Q Consensus       557 ~l~~n~~~  564 (569)
                      ++++|++.
T Consensus       326 ~l~~N~l~  333 (477)
T 2id5_A          326 ILDSNPLA  333 (477)
T ss_dssp             ECCSSCEE
T ss_pred             EccCCCcc
Confidence            55555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.4e-34  Score=288.80  Aligned_cols=346  Identities=27%  Similarity=0.341  Sum_probs=269.8

Q ss_pred             CCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEE
Q 047977          163 KLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFL  242 (569)
Q Consensus       163 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  242 (569)
                      .+++++.|++.++.+...  ..+..+++|++|++++|.+.+.. . +..+++|++|++++|.+....+  ++.+++|+++
T Consensus        44 ~l~~l~~L~l~~~~i~~l--~~~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHHTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             HhccccEEecCCCCCccC--cchhhhcCCCEEECCCCccCCch-h-hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            357899999999887643  34788899999999999988543 3 8889999999999998876544  8888999999


Q ss_pred             EcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccc
Q 047977          243 ALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHF  322 (569)
Q Consensus       243 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  322 (569)
                      ++++|.+++..+  +..+++|+.|++++|.+.+ ++  .+..+++|+.+++.+ .+.+.  ..+..+++|+.|++++|.+
T Consensus       118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKV  189 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcC
Confidence            999998876543  7888999999999888763 33  277888999999864 33322  2377888999999999888


Q ss_pred             cccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccc
Q 047977          323 SGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENI  402 (569)
Q Consensus       323 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  402 (569)
                      .+.  ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+...  ..+..+++|+.|++++|.+.+..+  +
T Consensus       190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~  261 (466)
T 1o6v_A          190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L  261 (466)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence            743  357788899999999988875543  77788899999999887742  457778889999998888875432  7


Q ss_pred             cCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCc
Q 047977          403 SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLN  482 (569)
Q Consensus       403 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  482 (569)
                      ..+++|+.+++++|.+++..+  +..++ +|+.|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|+
T Consensus       262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  334 (466)
T 1o6v_A          262 SGLTKLTELKLGANQISNISP--LAGLT-ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ  334 (466)
T ss_dssp             TTCTTCSEEECCSSCCCCCGG--GTTCT-TCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred             hcCCCCCEEECCCCccCcccc--ccCCC-ccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence            788888888888888875433  55554 88888888888875433  6778888888888888875443  67888888


Q ss_pred             EEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCccee
Q 047977          483 RVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISG  541 (569)
Q Consensus       483 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  541 (569)
                      +|++++|++.+.  ..++.+++|++|++++|++.+..|  +..+++|+.|++++|++++
T Consensus       335 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          335 RLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             EeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            888888888764  457788888888888888876655  7888888888888888885

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.4e-34  Score=286.59  Aligned_cols=388  Identities=23%  Similarity=0.289  Sum_probs=268.8

Q ss_pred             CCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEE
Q 047977          115 CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLV  194 (569)
Q Consensus       115 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  194 (569)
                      .++|++++++++.+ +.+|..+ +++++|++|++++|.+.+..+..++.+++|+.+++.+|..           .+++.|
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L   76 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL   76 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred             cccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence            47888999999888 5788765 8888999999999888888888888888776666655542           346777


Q ss_pred             EcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCc
Q 047977          195 ELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLS  274 (569)
Q Consensus       195 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  274 (569)
                      ++++|.+++ +|.   ..++|++|++++|.+.. .+.   ..++|+.+++++|.+++...  +  .++|+.|++++|.+.
T Consensus        77 ~l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n~l~~l~~--~--~~~L~~L~L~~n~l~  144 (454)
T 1jl5_A           77 ELNNLGLSS-LPE---LPPHLESLVASCNSLTE-LPE---LPQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSNNQLE  144 (454)
T ss_dssp             ECTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCCS--C--CTTCCEEECCSSCCS
T ss_pred             EecCCcccc-CCC---CcCCCCEEEccCCcCCc-ccc---ccCCCcEEECCCCccCcccC--C--CCCCCEEECcCCCCC
Confidence            777777663 333   23678888888888775 332   23778888888887764221  1  168999999999887


Q ss_pred             cccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCccc
Q 047977          275 GEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTL  354 (569)
Q Consensus       275 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  354 (569)
                      + ++.  ++.+++|+.|++++|.+.+ +|..   .++|++|++++|.+++ +| .+..+++|++|++++|.+.. ++.. 
T Consensus       145 ~-lp~--~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~-  213 (454)
T 1jl5_A          145 K-LPE--LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL-  213 (454)
T ss_dssp             S-CCC--CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC-
T ss_pred             C-Ccc--cCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC-
Confidence            4 552  8889999999999998874 4443   3589999999999985 55 68899999999999999874 3322 


Q ss_pred             ccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCc
Q 047977          355 WNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLI  434 (569)
Q Consensus       355 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~  434 (569)
                        .++|++|++++|.+. .++ .+..+++|+.|++++|.+.+ +|.   ..++|+.+++++|.+++ +|..    +++|+
T Consensus       214 --~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~----~~~L~  280 (454)
T 1jl5_A          214 --PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL----PQSLT  280 (454)
T ss_dssp             --CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC----CTTCC
T ss_pred             --cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc----cCcCC
Confidence              268999999999988 555 48899999999999999984 543   24899999999999885 4432    35999


Q ss_pred             eEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCC-CCCcEEEccCCccccchhhhhcCCCCCcEEeCcCC
Q 047977          435 NVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNC-SNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGN  513 (569)
Q Consensus       435 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  513 (569)
                      .|++++|.+.+ ++.   ..++|+.|++++|++++ ++    .+ ++|++|++++|.+.+ +|..   +++|++|++++|
T Consensus       281 ~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N  347 (454)
T 1jl5_A          281 FLDVSENIFSG-LSE---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFN  347 (454)
T ss_dssp             EEECCSSCCSE-ESC---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred             EEECcCCccCc-ccC---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCC
Confidence            99999999875 221   12689999999999884 33    23 589999999999986 4443   699999999999


Q ss_pred             cccccCCcCcccCCCCCEEECCCCccee--cCCcCccCC-------------CCCCeEeCcCCcCcc--cCC
Q 047977          514 HFIGEISPDWGECRNLSNLQLDRNKISG--GIPAELGNL-------------TRLGVLSLDSNELTG--KNS  568 (569)
Q Consensus       514 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~--~~~~~l~~l-------------~~L~~L~l~~n~~~~--~~~  568 (569)
                      .++ .+|.   .+++|+.|++++|++++  .+|.+++.+             ++|++|++++|+++|  ++|
T Consensus       348 ~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP  415 (454)
T 1jl5_A          348 HLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP  415 (454)
T ss_dssp             CCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------
T ss_pred             ccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch
Confidence            988 4565   47899999999999998  788888888             899999999999998  776

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.2e-33  Score=285.53  Aligned_cols=347  Identities=26%  Similarity=0.365  Sum_probs=293.7

Q ss_pred             hcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCE
Q 047977          138 TNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQH  217 (569)
Q Consensus       138 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  217 (569)
                      ..+++++.|++.++.+.. ++ .+..+++|++|++++|.+....+  +..+++|++|++++|.+.+..+  +..+++|++
T Consensus        43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            446789999999998874 33 57889999999999999876543  8999999999999999986543  889999999


Q ss_pred             EEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCc
Q 047977          218 LDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNS  297 (569)
Q Consensus       218 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  297 (569)
                      |++++|.+....  .+..+++|+++++++|.+.+..  .+..+++|+.|.+.+ .+. ...  .+..+++|+.|++++|.
T Consensus       117 L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~-~~~-~~~--~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          117 LTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGN-QVT-DLK--PLANLTTLERLDISSNK  188 (466)
T ss_dssp             EECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEEE-SCC-CCG--GGTTCTTCCEEECCSSC
T ss_pred             EECCCCCCCCCh--HHcCCCCCCEEECCCCccCCCh--hhccCCcccEeecCC-ccc-Cch--hhccCCCCCEEECcCCc
Confidence            999999988653  3889999999999999988542  488899999999964 333 222  27899999999999999


Q ss_pred             ceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCcc
Q 047977          298 FMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPE  377 (569)
Q Consensus       298 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  377 (569)
                      +.+.  ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+....+  
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--  260 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--  260 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--
Confidence            8743  447889999999999999986543  77899999999999998754  468899999999999999875433  


Q ss_pred             ccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCC
Q 047977          378 IGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFAL  457 (569)
Q Consensus       378 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  457 (569)
                      +..+++|+.|++++|.+.+. +. +..+++|+.+++++|.+.+..+  +..++ +|+.|++++|.+.+..+  +..+++|
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L  333 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLK-NLTYLTLYFNNISDISP--VSSLTKL  333 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCT-TCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred             hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCC-CCCEEECcCCcCCCchh--hccCccC
Confidence            88899999999999999854 33 8889999999999999986543  55665 99999999999986654  7789999


Q ss_pred             cEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccc
Q 047977          458 EELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIG  517 (569)
Q Consensus       458 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  517 (569)
                      +.|++++|++++.  ..+.++++|+.|++++|.+++..|  +..+++|++|++++|++++
T Consensus       334 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          334 QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            9999999999843  578999999999999999998777  8899999999999999885

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.8e-33  Score=283.42  Aligned_cols=301  Identities=22%  Similarity=0.198  Sum_probs=175.3

Q ss_pred             CCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEc
Q 047977          214 NLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQI  293 (569)
Q Consensus       214 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  293 (569)
                      ++++|++++|.+....+..|..+++|++|++++|.++...+..+.++++|+.|++++|.+. .++...+.++++|+.|++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEEC
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEEC
Confidence            4444555544444444444445555555555555554444444555555555555555544 333333555556666666


Q ss_pred             cCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCccccc
Q 047977          294 QNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGT  373 (569)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  373 (569)
                      ++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+...
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence            66655555555555666666666666666555555566666666666666666544444556666666666666666555


Q ss_pred             CCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhC
Q 047977          374 IPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCS  453 (569)
Q Consensus       374 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  453 (569)
                      ....+..+++|+.|++++|...+.++.......+|+.|++++|.++...+..+..++ +|+.|++++|.+.+..+..+..
T Consensus       192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~  270 (477)
T 2id5_A          192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLHE  270 (477)
T ss_dssp             CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT-TCCEEECCSSCCCEECTTSCTT
T ss_pred             ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc-ccCeeECCCCcCCccChhhccc
Confidence            555566666666666666655545444444445666666666666533223344443 6666666666666544455566


Q ss_pred             CCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCccc
Q 047977          454 GFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFI  516 (569)
Q Consensus       454 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  516 (569)
                      +++|+.|++++|++.+..+..+.++++|++|++++|.+++..+..|..+++|++|++++|++.
T Consensus       271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            666777777777666655666666677777777777666655666666667777777766654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.2e-33  Score=280.96  Aligned_cols=354  Identities=18%  Similarity=0.192  Sum_probs=228.6

Q ss_pred             hhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCC
Q 047977          137 FTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQ  216 (569)
Q Consensus       137 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  216 (569)
                      +..+++|++|+++++.+.+. + .+..+++|++|++++|.+.+.   .+..+++|++|++++|.+.+. +  +..+++|+
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~  109 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL-D--VTPLTKLT  109 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred             hhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence            46788889999988888753 3 678888888888888887754   277788888888888887753 2  67788888


Q ss_pred             EEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCC
Q 047977          217 HLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNN  296 (569)
Q Consensus       217 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  296 (569)
                      +|++++|.+...   .++.+++|+++++++|.++..   .+..+++|+.|++++|...+.+   .+..+++|+.|++++|
T Consensus       110 ~L~L~~N~l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          110 YLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFN  180 (457)
T ss_dssp             EEECCSSCCSCC---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCee---cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCC
Confidence            888888887653   267778888888888777753   2667777777777777544343   2566677777777777


Q ss_pred             cceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCc
Q 047977          297 SFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPP  376 (569)
Q Consensus       297 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  376 (569)
                      .+.+ ++  +..+++|+.|++++|.+++.   .+..+++|++|++++|.+.+ ++  +..+++|+.|++++|.+++..  
T Consensus       181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--  249 (457)
T 3bz5_A          181 KITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--  249 (457)
T ss_dssp             CCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--
T ss_pred             ccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--
Confidence            7664 33  56667777777777777643   36667777777777777764 33  666677777777777766432  


Q ss_pred             cccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCC
Q 047977          377 EIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFA  456 (569)
Q Consensus       377 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  456 (569)
                       ...+++|+.++++.+              +|+.+++++|.+.+.+|  +..++ +|+.|++++|...+.+|.   ...+
T Consensus       250 -~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~-~L~~L~Ls~n~~l~~l~~---~~~~  308 (457)
T 3bz5_A          250 -VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCR-KIKELDVTHNTQLYLLDC---QAAG  308 (457)
T ss_dssp             -CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCT-TCCCCCCTTCTTCCEEEC---TTCC
T ss_pred             -HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccc-cCCEEECCCCcccceecc---CCCc
Confidence             344566666665543              34445555555544443  12233 677777776665444432   1222


Q ss_pred             CcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCC
Q 047977          457 LEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDR  536 (569)
Q Consensus       457 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  536 (569)
                      |+.|+             ++++++|++|++++|.+++. +  ++.+++|+.|++++|++.+        +++|+.|++++
T Consensus       309 L~~L~-------------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~  364 (457)
T 3bz5_A          309 ITELD-------------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALN  364 (457)
T ss_dssp             CSCCC-------------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGG
T ss_pred             ceEec-------------hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccC
Confidence            33332             23346677777777777653 2  6667777777777777653        23455555666


Q ss_pred             CcceecCCcCccCCCCCCeEeCcCCcCcccCC
Q 047977          537 NKISGGIPAELGNLTRLGVLSLDSNELTGKNS  568 (569)
Q Consensus       537 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  568 (569)
                      |.+.+.     ..+..|+.+++++|+++|++|
T Consensus       365 n~l~g~-----~~~~~l~~l~l~~N~l~g~ip  391 (457)
T 3bz5_A          365 NNFEAE-----GQTITMPKETLTNNSLTIAVS  391 (457)
T ss_dssp             TSEEEE-----EEEEECCCBCCBTTBEEEECC
T ss_pred             CcEEec-----ceeeecCccccccCcEEEEcC
Confidence            666643     234456666666666666665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=8.7e-33  Score=276.62  Aligned_cols=272  Identities=24%  Similarity=0.219  Sum_probs=208.1

Q ss_pred             cccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccC
Q 047977            9 SGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKF   88 (569)
Q Consensus         9 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~   88 (569)
                      ....+..+.++++|++|+++++.+++. | .+..+++|++|++++|.+++. +  +..+++|++|++++|.+....   +
T Consensus        31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~---~  102 (457)
T 3bz5_A           31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD---V  102 (457)
T ss_dssp             CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---C
T ss_pred             CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee---c
Confidence            344456788899999999999998854 4 688899999999999998854 3  788999999999999888763   7


Q ss_pred             CCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCC
Q 047977           89 SNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLT  168 (569)
Q Consensus        89 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  168 (569)
                      +.+++|++|++++|.+.+ .+  ++.+++|++|++++|.+++ ++   +..+++|++|++++|...+..  .+..+++|+
T Consensus       103 ~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~  173 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLT  173 (457)
T ss_dssp             TTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred             CCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence            889999999999998884 33  7888999999999999885 33   578899999999998654343  477888999


Q ss_pred             EEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEccccc
Q 047977          169 VLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQ  248 (569)
Q Consensus       169 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  248 (569)
                      .|++++|.++.. +  +..+++|+.|++++|.+.+.   .+..+++|++|++++|.+... +  ++.+++|+.+++++|.
T Consensus       174 ~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          174 TLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             EEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSC
T ss_pred             EEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCc
Confidence            999999988763 2  77888999999999988754   377888999999999988763 3  7788889999999988


Q ss_pred             ceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccC
Q 047977          249 LSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPI  326 (569)
Q Consensus       249 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  326 (569)
                      +++..   ...+++|+.+.++.+               +|+.+++++|...+.+|  +..+++|+.|++++|...+.+
T Consensus       245 l~~~~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l  302 (457)
T 3bz5_A          245 LTELD---VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLL  302 (457)
T ss_dssp             CSCCC---CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEE
T ss_pred             CCCcC---HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCccccee
Confidence            87543   445666776665543               34455555555544443  345667777777777654443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.5e-32  Score=271.25  Aligned_cols=310  Identities=19%  Similarity=0.191  Sum_probs=162.9

Q ss_pred             CCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEE
Q 047977          212 LKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESL  291 (569)
Q Consensus       212 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  291 (569)
                      +++++.++++++.+....+..++.+++|++++++++.+++..+..+..+++|+.|++++|.+. .++...++.+++|+.|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEE
Confidence            456666666666665554444555666666666666665554455555566666666665554 2333334555555555


Q ss_pred             EccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCccc
Q 047977          292 QIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLS  371 (569)
Q Consensus       292 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  371 (569)
                      ++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+...   .+..+++|+.+++++|.+.
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence            5555555533223345555555555555555544444455555555555555555432   2334455555555555443


Q ss_pred             ccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhh
Q 047977          372 GTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYEL  451 (569)
Q Consensus       372 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  451 (569)
                      .     +...++|+.+++++|.+... +.  ...+                         +|+.|++++|.+.+.  ..+
T Consensus       200 ~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~-------------------------~L~~L~l~~n~l~~~--~~l  244 (390)
T 3o6n_A          200 T-----LAIPIAVEELDASHNSINVV-RG--PVNV-------------------------ELTILKLQHNNLTDT--AWL  244 (390)
T ss_dssp             E-----EECCSSCSEEECCSSCCCEE-EC--CCCS-------------------------SCCEEECCSSCCCCC--GGG
T ss_pred             c-----cCCCCcceEEECCCCeeeec-cc--cccc-------------------------cccEEECCCCCCccc--HHH
Confidence            1     12223455555554444421 11  1123                         555555555555432  344


Q ss_pred             hCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCE
Q 047977          452 CSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSN  531 (569)
Q Consensus       452 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  531 (569)
                      ..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+ ++..++.+++|++|++++|++. .+|..++.+++|+.
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~  322 (390)
T 3o6n_A          245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN  322 (390)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSE
T ss_pred             cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCE
Confidence            555566666666665555555555556666666666665553 2333445566666666666554 34444555566666


Q ss_pred             EECCCCcceecCCcCccCCCCCCeEeCcCCcCcc
Q 047977          532 LQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG  565 (569)
Q Consensus       532 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  565 (569)
                      |++++|+++.. +  +..+++|++|++++|++.+
T Consensus       323 L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          323 LYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             EECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             EECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence            66666665532 1  4555566666666666543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1e-31  Score=261.26  Aligned_cols=306  Identities=24%  Similarity=0.346  Sum_probs=178.3

Q ss_pred             cCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCc
Q 047977          210 GQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELE  289 (569)
Q Consensus       210 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  289 (569)
                      ..+++|++|+++++.+...  ..+..+++|+++++++|.+++..+  +..+++|+.|++++|.+.+ ++  .+..+++|+
T Consensus        41 ~~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~--~~~~l~~L~  113 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS--ALQNLTNLR  113 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG--GGTTCTTCS
T ss_pred             hhcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch--HHcCCCcCC
Confidence            3456667777766666543  125555666666666655553322  4555555555555555442 21  144445555


Q ss_pred             EEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCc
Q 047977          290 SLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNN  369 (569)
Q Consensus       290 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  369 (569)
                      .|++++|.+.+. +. +..+++|+.|++++|...... ..                        +..+++|++|++++|.
T Consensus       114 ~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~------------------------~~~l~~L~~L~l~~~~  166 (347)
T 4fmz_A          114 ELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SP------------------------LSNMTGLNYLTVTESK  166 (347)
T ss_dssp             EEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GG------------------------GTTCTTCCEEECCSSC
T ss_pred             EEECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cc------------------------hhhCCCCcEEEecCCC
Confidence            555555444422 11 444444444444444333222 22                        4444555555555554


Q ss_pred             ccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccCh
Q 047977          370 LSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPY  449 (569)
Q Consensus       370 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  449 (569)
                      +....  .+..+++|+.+++++|.+.+ ++. +..+++|+.+++++|.+.+..+  +..++ +|++|++++|.+.+..+ 
T Consensus       167 ~~~~~--~~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~-~L~~L~l~~n~l~~~~~-  238 (347)
T 4fmz_A          167 VKDVT--PIANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMT-RLNSLKIGNNKITDLSP-  238 (347)
T ss_dssp             CCCCG--GGGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCT-TCCEEECCSSCCCCCGG-
T ss_pred             cCCch--hhccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch--hhcCC-cCCEEEccCCccCCCcc-
Confidence            43211  14445555555555555542 211 4555666666666665553322  33443 67777777776653322 


Q ss_pred             hhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCC
Q 047977          450 ELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNL  529 (569)
Q Consensus       450 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L  529 (569)
                       +..+++|++|++++|.++. . ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|++.+..+..++.+++|
T Consensus       239 -~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  313 (347)
T 4fmz_A          239 -LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL  313 (347)
T ss_dssp             -GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred             -hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence             6667778888888887763 2 4577778888888888877754  347778888888888888877777778888888


Q ss_pred             CEEECCCCcceecCCcCccCCCCCCeEeCcCCcCc
Q 047977          530 SNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT  564 (569)
Q Consensus       530 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  564 (569)
                      +.|++++|++++..|  +..+++|++|++++|+|+
T Consensus       314 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            888888888886555  777888888888888875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.8e-31  Score=259.49  Aligned_cols=308  Identities=23%  Similarity=0.319  Sum_probs=234.6

Q ss_pred             CcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCC
Q 047977          184 DIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRL  263 (569)
Q Consensus       184 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L  263 (569)
                      .+..+++|+.|++.++.+... + .+..+++|++|++++|.+....+  +..+++|+++++++|.+++.  ..+..+++|
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L  112 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL  112 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             cchhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence            345778999999999998743 3 48889999999999999886543  88999999999999998864  358899999


Q ss_pred             CEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccC
Q 047977          264 NELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSG  343 (569)
Q Consensus       264 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  343 (569)
                      ++|++++|.+.+ ++.  +..+++|+.+++++|...... ..+..+++|+.|++++|.+.+..  .+..+++|++|++++
T Consensus       113 ~~L~l~~n~i~~-~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~  186 (347)
T 4fmz_A          113 RELYLNEDNISD-ISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNY  186 (347)
T ss_dssp             SEEECTTSCCCC-CGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECTT
T ss_pred             CEEECcCCcccC-chh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCch--hhccCCCCCEEEccC
Confidence            999999999874 333  789999999999999766444 44888999999999999987443  377888999999999


Q ss_pred             CccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCC
Q 047977          344 NQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIP  423 (569)
Q Consensus       344 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  423 (569)
                      |.+.+..+  +..+++|+.+++++|.+....+  +..+++|+.|++++|.+.+. +. +..++                 
T Consensus       187 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~-----------------  243 (347)
T 4fmz_A          187 NQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLS-----------------  243 (347)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCT-----------------
T ss_pred             Cccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCC-----------------
Confidence            88874422  6777888888888877663222  55666677777766666522 11 33444                 


Q ss_pred             chhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCC
Q 047977          424 GDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHP  503 (569)
Q Consensus       424 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~  503 (569)
                              +|++|++++|.+.+.  ..+..+++|+.|++++|.+++ . ..+..+++|++|++++|.+.+..+..++.++
T Consensus       244 --------~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  311 (347)
T 4fmz_A          244 --------QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT  311 (347)
T ss_dssp             --------TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred             --------CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccc
Confidence                    555555555555431  345667788888888887773 3 4577888899999999988888888888899


Q ss_pred             CCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcce
Q 047977          504 RLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS  540 (569)
Q Consensus       504 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  540 (569)
                      +|++|++++|++++..|  ++.+++|+.|++++|.++
T Consensus       312 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             TCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            99999999998876544  788899999999998876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.1e-31  Score=279.42  Aligned_cols=310  Identities=19%  Similarity=0.182  Sum_probs=166.0

Q ss_pred             CCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEE
Q 047977          212 LKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESL  291 (569)
Q Consensus       212 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  291 (569)
                      +++++.++++++.+....+..++.+++|+.|++++|.++...+..+..+++|+.|++++|.+. .++...++.+++|+.|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEE
Confidence            345566666665555544444555555555555555555444445555555555555555544 2333334455555555


Q ss_pred             EccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCccc
Q 047977          292 QIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLS  371 (569)
Q Consensus       292 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  371 (569)
                      ++++|.+.+..+..++.+++|+.|++++|.+++..+..|..+++|++|++++|.+...   .+..++             
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~-------------  192 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIP-------------  192 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCT-------------
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhh-------------
Confidence            5555554433333344455555555555555444444444455555555555544422   133344             


Q ss_pred             ccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhh
Q 047977          372 GTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYEL  451 (569)
Q Consensus       372 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  451 (569)
                                 +|+.+++++|.+.+     +...++|+.+++++|.+....+.    .+++|+.|++++|.+.+  +..+
T Consensus       193 -----------~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~----~~~~L~~L~L~~n~l~~--~~~l  250 (597)
T 3oja_B          193 -----------SLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP----VNVELTILKLQHNNLTD--TAWL  250 (597)
T ss_dssp             -----------TCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS----CCSCCCEEECCSSCCCC--CGGG
T ss_pred             -----------hhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc----cCCCCCEEECCCCCCCC--Chhh
Confidence                       44555554444431     22334455555555544422111    11356666666666653  2445


Q ss_pred             hCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCE
Q 047977          452 CSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSN  531 (569)
Q Consensus       452 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  531 (569)
                      ..+++|+.|++++|.+.+..|..+.++++|+.|++++|.+++ +|..++.+++|++|++++|.+. .+|..+..+++|+.
T Consensus       251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~  328 (597)
T 3oja_B          251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN  328 (597)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSE
T ss_pred             ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCE
Confidence            566666666666666665556666666666666666666664 3444455666666666666665 45555666666666


Q ss_pred             EECCCCcceecCCcCccCCCCCCeEeCcCCcCcc
Q 047977          532 LQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG  565 (569)
Q Consensus       532 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  565 (569)
                      |++++|.+++. +  +..+++|+.|++++|++.+
T Consensus       329 L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          329 LYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             EECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             EECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence            66666666643 1  4556666666666666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.2e-31  Score=262.97  Aligned_cols=310  Identities=19%  Similarity=0.196  Sum_probs=227.5

Q ss_pred             CCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEE
Q 047977          187 LMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNEL  266 (569)
Q Consensus       187 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L  266 (569)
                      .+++++.+++.++.+...-+..+..+++|++|++++|.+....+..++.+++|+++++++|.++...+..+..+++|+.|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            45789999999999886555557889999999999999998888899999999999999999998888889999999999


Q ss_pred             eCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCcc
Q 047977          267 GLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQL  346 (569)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  346 (569)
                      ++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++.   .+..+++|+.|++++|.+
T Consensus       123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            99999988 66766678999999999999999877777899999999999999999854   356789999999999988


Q ss_pred             ccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchh
Q 047977          347 SGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDF  426 (569)
Q Consensus       347 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~  426 (569)
                      ..     +...++|++|++++|.+.....   ...++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+..+
T Consensus       199 ~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~  268 (390)
T 3o6n_A          199 ST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF  268 (390)
T ss_dssp             SE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             cc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence            63     3445789999999999874422   2357999999999988743  456666666666666666655444444


Q ss_pred             hccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCc
Q 047977          427 GKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLD  506 (569)
Q Consensus       427 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  506 (569)
                      ..++ +|+.|++++|.+                        + .++..+..+++|++|++++|.+. .+|..++.+++|+
T Consensus       269 ~~l~-~L~~L~L~~n~l------------------------~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~  321 (390)
T 3o6n_A          269 VKMQ-RLERLYISNNRL------------------------V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE  321 (390)
T ss_dssp             TTCS-SCCEEECCSSCC------------------------C-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred             cccc-cCCEEECCCCcC------------------------c-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCC
Confidence            4443 555555555544                        4 22333344455555555555544 2333344455555


Q ss_pred             EEeCcCCcccccCCcCcccCCCCCEEECCCCcce
Q 047977          507 FIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS  540 (569)
Q Consensus       507 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  540 (569)
                      +|++++|+++..   .+..+++|+.|++++|++.
T Consensus       322 ~L~L~~N~i~~~---~~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          322 NLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             EEECCSSCCCCC---CCCTTCCCSEEECCSSCEE
T ss_pred             EEECCCCcccee---CchhhccCCEEEcCCCCcc
Confidence            555555554422   1444455555555555544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.98  E-value=1.5e-31  Score=254.94  Aligned_cols=253  Identities=29%  Similarity=0.483  Sum_probs=197.2

Q ss_pred             CCCcEEecccccccc--cCCccccCCCCCCEEEccC-CccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCE
Q 047977          310 TKLQYLFLYRNHFSG--PIPSEIGKLTSLEKLDLSG-NQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVA  386 (569)
Q Consensus       310 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  386 (569)
                      .+++.|++++|.+.+  .+|..+..+++|++|++++ |.+....+..|.++++|++|++++|.+++..+..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            356666666666665  5566666666666666663 6666556666666677777777777666666666667777777


Q ss_pred             EEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCc
Q 047977          387 FDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNN  466 (569)
Q Consensus       387 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  466 (569)
                      |++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+.+.|+.|++++|.+.+..|..+..+. |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            777777776666677777777777777777777777777777666788888888888777777777776 9999999999


Q ss_pred             ceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcC
Q 047977          467 FTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAE  546 (569)
Q Consensus       467 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~  546 (569)
                      +++..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|.+.+.+|..+..+++|+.|++++|++++.+|..
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            8877888888999999999999999866665 788899999999999998888999999999999999999999888886


Q ss_pred             ccCCCCCCeEeCcCCc-Ccc
Q 047977          547 LGNLTRLGVLSLDSNE-LTG  565 (569)
Q Consensus       547 l~~l~~L~~L~l~~n~-~~~  565 (569)
                       ..+++|+.+++++|+ +.|
T Consensus       288 -~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          288 -GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             -TTGGGSCGGGTCSSSEEES
T ss_pred             -ccccccChHHhcCCCCccC
Confidence             888999999999998 665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.8e-30  Score=270.34  Aligned_cols=310  Identities=19%  Similarity=0.182  Sum_probs=223.7

Q ss_pred             CCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEE
Q 047977          187 LMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNEL  266 (569)
Q Consensus       187 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L  266 (569)
                      .+.+++.+++.++.+...-+..+..+++|++|++++|.+....+..++.+++|+.|++++|.++...+..+..+++|+.|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            35788999999999886656667889999999999999998888899999999999999999998888888999999999


Q ss_pred             eCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCcc
Q 047977          267 GLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQL  346 (569)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  346 (569)
                      ++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++.   .+..+++|+.|++++|.+
T Consensus       129 ~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          129 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence            99999998 66666688999999999999999987788899999999999999999854   356688999999999987


Q ss_pred             ccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchh
Q 047977          347 SGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDF  426 (569)
Q Consensus       347 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~  426 (569)
                      ..     +...++|+.|++++|.+......   ..++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..|..+
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~  274 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF  274 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             cc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh
Confidence            63     34456888888888887633221   125677777777776632  455556666666666666555555555


Q ss_pred             hccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCc
Q 047977          427 GKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLD  506 (569)
Q Consensus       427 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  506 (569)
                      ..++ +|+.|++++|.+.+ ++..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+..   ++.+++|+
T Consensus       275 ~~l~-~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~  348 (597)
T 3oja_B          275 VKMQ-RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLK  348 (597)
T ss_dssp             TTCS-SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCS
T ss_pred             cCcc-CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCC
Confidence            5544 55555555555542 2333344455555555555554 34444444555555555555554321   34445555


Q ss_pred             EEeCcCCccc
Q 047977          507 FIRLSGNHFI  516 (569)
Q Consensus       507 ~L~l~~~~~~  516 (569)
                      .|++++|++.
T Consensus       349 ~L~l~~N~~~  358 (597)
T 3oja_B          349 NLTLSHNDWD  358 (597)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEeeCCCCC
Confidence            5555555543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2e-29  Score=242.97  Aligned_cols=269  Identities=19%  Similarity=0.251  Sum_probs=183.6

Q ss_pred             CCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEc
Q 047977          286 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQL  365 (569)
Q Consensus       286 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  365 (569)
                      +.++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.. ++..+.  ++|++|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEEC
Confidence            445555555555554444445555556666666555554445555556666666666665552 222222  55666666


Q ss_pred             ccCcccccCCccccCCCCCCEEEccCCcccc--cCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcC
Q 047977          366 FFNNLSGTIPPEIGSMASLVAFDVNTNQLHG--ELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSF  443 (569)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  443 (569)
                      ++|.+....+..+..+++|+.|++++|.+..  ..+..+..+++|+.+++++|.++. +|..+.   ++|++|++++|.+
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~---~~L~~L~l~~n~l  204 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP---PSLTELHLDGNKI  204 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC---TTCSEEECTTSCC
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc---ccCCEEECCCCcC
Confidence            6666654444455566666666666665542  344556667777777777776663 343332   4888888888888


Q ss_pred             ccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCc
Q 047977          444 SGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDW  523 (569)
Q Consensus       444 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l  523 (569)
                      .+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|++++..+..|
T Consensus       205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence            8777778888889999999999988776778888999999999999888 567778889999999999999887666666


Q ss_pred             cc------CCCCCEEECCCCccee--cCCcCccCCCCCCeEeCcCCc
Q 047977          524 GE------CRNLSNLQLDRNKISG--GIPAELGNLTRLGVLSLDSNE  562 (569)
Q Consensus       524 ~~------~~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~  562 (569)
                      ..      .++|+.|++++|++..  ..|..+..+.+++.+++++|+
T Consensus       284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            43      4788999999998863  567788889999999999885

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1e-33  Score=286.77  Aligned_cols=377  Identities=18%  Similarity=0.182  Sum_probs=283.0

Q ss_pred             CCCCcEEEcccCcceecCC-ccccCCCCCCEEEcccCCCCcC----CCcCCcCCCCCCEEEcccccceeccCccC-cCCC
Q 047977          188 MSNIQLVELFNNSFTGQIP-SSLGQLKNLQHLDLRMNALNST----IPPELGLCTNLSFLALAMNQLSGGLPLSL-SNLS  261 (569)
Q Consensus       188 ~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~l-~~~~  261 (569)
                      .+++++|+++++.+.+... ..+..+++|++|++++|.+...    .+..+..+++|+++++++|.+.+.....+ ..++
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            3568899999998865332 2366789999999999998743    24456778999999999999876433222 2334


Q ss_pred             ----CCCEEeCcCCcCccc---cCccccCCCCCCcEEEccCCcceeeCCccc-----cCCCCCcEEecccccccccC---
Q 047977          262 ----RLNELGLSDNFLSGE---ISANLIGNWTELESLQIQNNSFMGNIPPEI-----GLLTKLQYLFLYRNHFSGPI---  326 (569)
Q Consensus       262 ----~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~---  326 (569)
                          +|++|++++|.+.+.   .....+..+++|+.|++++|.+.+..+..+     ...++|++|++++|.+++..   
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                799999999998742   223447889999999999998765433322     23568999999999988643   


Q ss_pred             -CccccCCCCCCEEEccCCccccccCcccc-----cCCCCCEEEcccCccccc----CCccccCCCCCCEEEccCCcccc
Q 047977          327 -PSEIGKLTSLEKLDLSGNQLSGTIPPTLW-----NLTNLLSLQLFFNNLSGT----IPPEIGSMASLVAFDVNTNQLHG  396 (569)
Q Consensus       327 -~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~  396 (569)
                       +..+..+++|++|++++|.+.+.....+.     ..++|++|++++|.++..    ++..+..+++|+.|++++|.+.+
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence             45566789999999999998765444443     356999999999998753    35566778999999999998875


Q ss_pred             cC-----CccccCCCCCCEEEccCCccccc----CCchhhccCCCCceEEcccCcCccccChhhhC-----CCCCcEEEc
Q 047977          397 EL-----PENISRLVNLNKFSVFTNNFSGS----IPGDFGKFSPSLINVSFSNNSFSGELPYELCS-----GFALEELTV  462 (569)
Q Consensus       397 ~~-----~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l  462 (569)
                      ..     +.....+++|+.|++++|.++..    ++..+..++ +|++|++++|.+.+..+..+..     .++|++|++
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L  320 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE-SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV  320 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT-TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC-CcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence            32     22233589999999999988764    445555565 9999999999987654444433     269999999


Q ss_pred             cCCcceee----CCccccCCCCCcEEEccCCccccchhhhhcC-----CCCCcEEeCcCCcccc----cCCcCcccCCCC
Q 047977          463 NGNNFTGS----LPACMRNCSNLNRVRFDGNQFTGNITRAFGV-----HPRLDFIRLSGNHFIG----EISPDWGECRNL  529 (569)
Q Consensus       463 ~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~-----l~~L~~L~l~~~~~~~----~~~~~l~~~~~L  529 (569)
                      ++|.++..    ++..+..+++|++|++++|.+.+..+..+..     .++|++|++++|.+++    .++..+..+++|
T Consensus       321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L  400 (461)
T 1z7x_W          321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL  400 (461)
T ss_dssp             TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred             CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence            99998754    3556778899999999999998765554442     7899999999999886    677788899999


Q ss_pred             CEEECCCCcceecCCcCcc-----CCCCCCeEeCcCCcCcc
Q 047977          530 SNLQLDRNKISGGIPAELG-----NLTRLGVLSLDSNELTG  565 (569)
Q Consensus       530 ~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~  565 (569)
                      ++|++++|++++.....+.     ....|++|.+.++.+..
T Consensus       401 ~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             CEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             cEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence            9999999999864333332     24578888888877654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=9.9e-30  Score=245.16  Aligned_cols=288  Identities=19%  Similarity=0.221  Sum_probs=212.8

Q ss_pred             CCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEc
Q 047977          262 RLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDL  341 (569)
Q Consensus       262 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  341 (569)
                      +++.++++++.+. .++...   .++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4566666666554 344321   256777777777776655566777777777777777777666667777777777777


Q ss_pred             cCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccc--cCCccccCCCCCCEEEccCCccc
Q 047977          342 SGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHG--ELPENISRLVNLNKFSVFTNNFS  419 (569)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~l~l~~~~~~  419 (569)
                      ++|.+. .++..+.  ++|++|++++|.+.......+..+++|+.|++++|.+..  ..+..+..+ +|+.+++++|.++
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            777776 3333332  677777777777775555567777778888877777752  445556666 8888888888877


Q ss_pred             ccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhh
Q 047977          420 GSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAF  499 (569)
Q Consensus       420 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l  499 (569)
                      + +|..+.   ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|..+
T Consensus       186 ~-l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l  260 (332)
T 2ft3_A          186 G-IPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL  260 (332)
T ss_dssp             S-CCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred             c-cCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence            4 444443   48999999999988766677888899999999999998766678899999999999999998 677778


Q ss_pred             cCCCCCcEEeCcCCcccccCCcCccc------CCCCCEEECCCCcce--ecCCcCccCCCCCCeEeCcCCc
Q 047977          500 GVHPRLDFIRLSGNHFIGEISPDWGE------CRNLSNLQLDRNKIS--GGIPAELGNLTRLGVLSLDSNE  562 (569)
Q Consensus       500 ~~l~~L~~L~l~~~~~~~~~~~~l~~------~~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~  562 (569)
                      +.+++|++|++++|++++..+..|..      .++|+.|++++|++.  +..|.++..+++|+.+++++|+
T Consensus       261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            99999999999999998776666654      477999999999987  6777889999999999999885

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=3.5e-33  Score=282.81  Aligned_cols=393  Identities=19%  Similarity=0.146  Sum_probs=295.0

Q ss_pred             CCCCCEEEccCCccccCCCcC-cCCCCCCcEEEcccCccee----cCCccccCCCCCCEEEcccCCCCcCCCcCC-cCCC
Q 047977          164 LSNLTVLRLATNKFSGPIPGD-IGLMSNIQLVELFNNSFTG----QIPSSLGQLKNLQHLDLRMNALNSTIPPEL-GLCT  237 (569)
Q Consensus       164 ~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~  237 (569)
                      .++|++|+++++.++...... +..+++|++|++++|.+.+    .++..+..+++|++|++++|.+.+.....+ ..++
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            367899999999876543333 6678999999999999874    345667888999999999999865433222 2233


Q ss_pred             ----CCCEEEccccccee----ccCccCcCCCCCCEEeCcCCcCccccCc----cccCCCCCCcEEEccCCcceeeC---
Q 047977          238 ----NLSFLALAMNQLSG----GLPLSLSNLSRLNELGLSDNFLSGEISA----NLIGNWTELESLQIQNNSFMGNI---  302 (569)
Q Consensus       238 ----~L~~l~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~---  302 (569)
                          +|+++++++|.+++    ..+..+..+++|+.|++++|.+.+....    ......++|+.|++++|.+.+..   
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                79999999999885    3467788999999999999998744332    22334578999999999887543   


Q ss_pred             -CccccCCCCCcEEecccccccccCCcccc-----CCCCCCEEEccCCccccc----cCcccccCCCCCEEEcccCcccc
Q 047977          303 -PPEIGLLTKLQYLFLYRNHFSGPIPSEIG-----KLTSLEKLDLSGNQLSGT----IPPTLWNLTNLLSLQLFFNNLSG  372 (569)
Q Consensus       303 -~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~  372 (569)
                       +..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+.+.    ++..+..+++|++|++++|.+..
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence             44566789999999999998754333332     366999999999998854    35667789999999999998874


Q ss_pred             cC-----CccccCCCCCCEEEccCCccccc----CCccccCCCCCCEEEccCCcccccCCchhhc----cCCCCceEEcc
Q 047977          373 TI-----PPEIGSMASLVAFDVNTNQLHGE----LPENISRLVNLNKFSVFTNNFSGSIPGDFGK----FSPSLINVSFS  439 (569)
Q Consensus       373 ~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~----~~~~L~~L~l~  439 (569)
                      ..     ...+..+++|+.|++++|.++..    ++..+..+++|+.|++++|.+....+..+..    ..++|++|+++
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  321 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  321 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence            32     22233588999999999998853    5666777999999999999887554444433    22499999999


Q ss_pred             cCcCccc----cChhhhCCCCCcEEEccCCcceeeCCcccc----C-CCCCcEEEccCCcccc----chhhhhcCCCCCc
Q 047977          440 NNSFSGE----LPYELCSGFALEELTVNGNNFTGSLPACMR----N-CSNLNRVRFDGNQFTG----NITRAFGVHPRLD  506 (569)
Q Consensus       440 ~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~----~-~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~  506 (569)
                      +|.+++.    ++..+..+++|++|++++|.+++..+..+.    . .++|++|++++|.+++    .++..+..+++|+
T Consensus       322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~  401 (461)
T 1z7x_W          322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  401 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence            9998865    455667789999999999998765444333    2 6899999999999986    6788888999999


Q ss_pred             EEeCcCCcccccCCcCc-----ccCCCCCEEECCCCcceecCCcCcc----CCCCCCeE
Q 047977          507 FIRLSGNHFIGEISPDW-----GECRNLSNLQLDRNKISGGIPAELG----NLTRLGVL  556 (569)
Q Consensus       507 ~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~~~~~~~~~l~----~l~~L~~L  556 (569)
                      +|++++|++.+.....+     .....|+.|++.++......++.++    ..|+|+.+
T Consensus       402 ~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~  460 (461)
T 1z7x_W          402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  460 (461)
T ss_dssp             EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             EEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence            99999999875432222     2345799999888877644333332    34555543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=5.1e-30  Score=244.25  Aligned_cols=252  Identities=26%  Similarity=0.466  Sum_probs=219.9

Q ss_pred             CCCcEEEccCCccee--eCCccccCCCCCcEEeccc-ccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCE
Q 047977          286 TELESLQIQNNSFMG--NIPPEIGLLTKLQYLFLYR-NHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLS  362 (569)
Q Consensus       286 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  362 (569)
                      .+++.|+++++.+.+  .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+....+..+.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            467888888888876  6778888888888888885 7787778888888888999999888888778888888899999


Q ss_pred             EEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCC-CCCEEEccCCcccccCCchhhccCCCCceEEcccC
Q 047977          363 LQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLV-NLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNN  441 (569)
Q Consensus       363 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  441 (569)
                      |++++|.+.+..+..+..+++|++|++++|.+.+.+|..+..++ +|+.+++++|.+++..|..+..+  .|+.|++++|
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l--~L~~L~Ls~N  207 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRN  207 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--CCSEEECCSS
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC--cccEEECcCC
Confidence            99999988877888888889999999999998888888888887 89999999999988888888776  3999999999


Q ss_pred             cCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCc
Q 047977          442 SFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISP  521 (569)
Q Consensus       442 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  521 (569)
                      .+.+..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|.+++.+|..++.+++|++|++++|++++.+|.
T Consensus       208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            99888888888999999999999999855544 78899999999999999988999999999999999999999988888


Q ss_pred             CcccCCCCCEEECCCCc-cee
Q 047977          522 DWGECRNLSNLQLDRNK-ISG  541 (569)
Q Consensus       522 ~l~~~~~L~~L~l~~n~-~~~  541 (569)
                      . +.+++|+.+++++|+ +.+
T Consensus       287 ~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          287 G-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             S-TTGGGSCGGGTCSSSEEES
T ss_pred             C-ccccccChHHhcCCCCccC
Confidence            7 889999999999998 443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=7.2e-29  Score=239.02  Aligned_cols=269  Identities=19%  Similarity=0.243  Sum_probs=176.5

Q ss_pred             CCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEE
Q 047977          261 SRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLD  340 (569)
Q Consensus       261 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  340 (569)
                      +.++.|++++|.+. .++...+..+++|+.|++++|.+.+..|..+..+++|++|++++|+++ .+|..+.  ++|++|+
T Consensus        52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~  127 (330)
T 1xku_A           52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR  127 (330)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred             CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence            34555555555554 233333555566666666666655444555666666666666666655 3333332  4666666


Q ss_pred             ccCCccccccCcccccCCCCCEEEcccCcccc--cCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcc
Q 047977          341 LSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSG--TIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNF  418 (569)
Q Consensus       341 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~  418 (569)
                      +++|.+....+..+..+++|++|++++|.+..  ..+..+..+++|+.|++++|.+. .+|..+.  ++|+.+++++|.+
T Consensus       128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l  204 (330)
T 1xku_A          128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKI  204 (330)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCC
T ss_pred             CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcC
Confidence            66666665555556666666666666666642  34455666677777777777666 3444332  6777777777777


Q ss_pred             cccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhh
Q 047977          419 SGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRA  498 (569)
Q Consensus       419 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  498 (569)
                      ++..+..+..++ +|++|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..
T Consensus       205 ~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~  282 (330)
T 1xku_A          205 TKVDAASLKGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND  282 (330)
T ss_dssp             CEECTGGGTTCT-TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred             CccCHHHhcCCC-CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhh
Confidence            766666666665 7888888888777665666777888888888888887 67777888888888888888888766666


Q ss_pred             hcC------CCCCcEEeCcCCcccc--cCCcCcccCCCCCEEECCCCc
Q 047977          499 FGV------HPRLDFIRLSGNHFIG--EISPDWGECRNLSNLQLDRNK  538 (569)
Q Consensus       499 l~~------l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~  538 (569)
                      |..      .++++.|++++|++..  ..|..|..+++++.+++++|+
T Consensus       283 f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            543      3788888999888753  455678888889999888874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=5e-29  Score=240.24  Aligned_cols=268  Identities=20%  Similarity=0.233  Sum_probs=179.8

Q ss_pred             CCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEE
Q 047977          261 SRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLD  340 (569)
Q Consensus       261 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  340 (569)
                      ++++.|++++|.+. .++...+..+++|+.|++++|.+.+..+.++..+++|++|++++|.++ .+|..+.  ++|++|+
T Consensus        54 ~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~  129 (332)
T 2ft3_A           54 PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELR  129 (332)
T ss_dssp             TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE
T ss_pred             CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEE
Confidence            45555555555554 233333555666666666666665555555666666666666666665 3333332  5666666


Q ss_pred             ccCCccccccCcccccCCCCCEEEcccCcccc--cCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcc
Q 047977          341 LSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSG--TIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNF  418 (569)
Q Consensus       341 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~  418 (569)
                      +++|.+....+..|..+++|++|++++|.++.  ..+..+..+ +|+.+++++|.+. .+|..+.  ++|+.+++++|.+
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i  205 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKI  205 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCC
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcC
Confidence            66666665545556666677777777666642  344455555 6777777777766 3444332  6777777777777


Q ss_pred             cccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhh
Q 047977          419 SGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRA  498 (569)
Q Consensus       419 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  498 (569)
                      ++..+..+..++ +|+.|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..
T Consensus       206 ~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~  283 (332)
T 2ft3_A          206 QAIELEDLLRYS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND  283 (332)
T ss_dssp             CCCCTTSSTTCT-TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred             CccCHHHhcCCC-CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhH
Confidence            766666666665 8888888888887666667777888888888888888 67777888888888888888888766666


Q ss_pred             hcC------CCCCcEEeCcCCccc--ccCCcCcccCCCCCEEECCCCc
Q 047977          499 FGV------HPRLDFIRLSGNHFI--GEISPDWGECRNLSNLQLDRNK  538 (569)
Q Consensus       499 l~~------l~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~n~  538 (569)
                      |..      .++|+.|++++|++.  ...|..|..+++|+.+++++|+
T Consensus       284 ~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            654      367888999999876  5566778888999999988874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.8e-27  Score=226.67  Aligned_cols=248  Identities=23%  Similarity=0.249  Sum_probs=137.0

Q ss_pred             cEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCcccccc--CcccccCCCCCEEEcc
Q 047977          289 ESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTI--PPTLWNLTNLLSLQLF  366 (569)
Q Consensus       289 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~  366 (569)
                      +.++.+++.+. .+|..+  .+++++|++++|.+++..+..|..+++|++|++++|.+....  +..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            45566555554 333322  246666666666666433334566666666666666655221  3344455666666666


Q ss_pred             cCcccccCCccccCCCCCCEEEccCCcccccCC-ccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCcc
Q 047977          367 FNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP-ENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG  445 (569)
Q Consensus       367 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  445 (569)
                      +|.+. .++..+..+++|+.|++++|.+.+..+ ..+..++                         +|++|++++|.+.+
T Consensus        87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-------------------------~L~~L~l~~n~l~~  140 (306)
T 2z66_A           87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-------------------------NLIYLDISHTHTRV  140 (306)
T ss_dssp             SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT-------------------------TCCEEECTTSCCEE
T ss_pred             CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhcc-------------------------CCCEEECCCCcCCc
Confidence            66554 233334455555555555555442221 2334444                         55555555555544


Q ss_pred             ccChhhhCCCCCcEEEccCCccee-eCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcc
Q 047977          446 ELPYELCSGFALEELTVNGNNFTG-SLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWG  524 (569)
Q Consensus       446 ~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~  524 (569)
                      ..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+++..+..+.
T Consensus       141 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  220 (306)
T 2z66_A          141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK  220 (306)
T ss_dssp             CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred             cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence            444445555566666666665553 3455556666666666666666655555566666666666666666554444556


Q ss_pred             cCCCCCEEECCCCcceecCCcCccCCC-CCCeEeCcCCcCcc
Q 047977          525 ECRNLSNLQLDRNKISGGIPAELGNLT-RLGVLSLDSNELTG  565 (569)
Q Consensus       525 ~~~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~  565 (569)
                      .+++|+.|++++|.+++..+..+..++ +|++|++++|++++
T Consensus       221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            666666666666666655565566553 56666666666654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=2.1e-30  Score=271.17  Aligned_cols=297  Identities=12%  Similarity=0.015  Sum_probs=144.7

Q ss_pred             CCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcce---eeCCccccCCCCCcEEecccccccccCCccccCCCC
Q 047977          259 NLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFM---GNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTS  335 (569)
Q Consensus       259 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  335 (569)
                      .+++|+.|++++|.+.+ ++ ..+..+++|+.++++.....   ......+..+++|+.+.++++... .++..+..+++
T Consensus       218 ~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~  294 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQ  294 (592)
T ss_dssp             HCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGG
T ss_pred             hCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCC
Confidence            44555555555544432 22 22444455555555432111   011223344555555555553222 33444455556


Q ss_pred             CCEEEccCCccccccC-cccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccC-----------Cccccc-CCccc
Q 047977          336 LEKLDLSGNQLSGTIP-PTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNT-----------NQLHGE-LPENI  402 (569)
Q Consensus       336 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~-~~~~~  402 (569)
                      |++|++++|.+.+... ..+..+++|++|++.++.....+......+++|++|++++           +.++.. +....
T Consensus       295 L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~  374 (592)
T 3ogk_B          295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA  374 (592)
T ss_dssp             CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred             CcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence            6666666555432221 2234556666666652221111222223455566666652           233221 11123


Q ss_pred             cCCCCCCEEEccCCcccccCCchhhccCCCCceEEcc----cCcCccc-----cChhhhCCCCCcEEEccCCc--ceeeC
Q 047977          403 SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFS----NNSFSGE-----LPYELCSGFALEELTVNGNN--FTGSL  471 (569)
Q Consensus       403 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~  471 (569)
                      ..+++|+.|.++.+.+++..+..+....++|+.|+++    .+.+++.     ++..+..+++|+.|+++.|.  +++..
T Consensus       375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~  454 (592)
T 3ogk_B          375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG  454 (592)
T ss_dssp             HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred             hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence            3456666666655555554444444422366666665    3344431     22234456677777776543  33322


Q ss_pred             Cccc-cCCCCCcEEEccCCcccc-chhhhhcCCCCCcEEeCcCCcccccC-CcCcccCCCCCEEECCCCcceecCCcCc-
Q 047977          472 PACM-RNCSNLNRVRFDGNQFTG-NITRAFGVHPRLDFIRLSGNHFIGEI-SPDWGECRNLSNLQLDRNKISGGIPAEL-  547 (569)
Q Consensus       472 ~~~l-~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~~l-  547 (569)
                      +..+ ..+++|++|++++|.+++ ..+..+..+++|++|++++|++++.. +...+.+++|+.|++++|+++......+ 
T Consensus       455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~  534 (592)
T 3ogk_B          455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ  534 (592)
T ss_dssp             HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG
T ss_pred             HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH
Confidence            2222 346667777777776654 23344566677777777777654332 2224556777777777777665443333 


Q ss_pred             cCCCCCCeEeC
Q 047977          548 GNLTRLGVLSL  558 (569)
Q Consensus       548 ~~l~~L~~L~l  558 (569)
                      +.++.++...+
T Consensus       535 ~~~p~l~~~~~  545 (592)
T 3ogk_B          535 MARPYWNIELI  545 (592)
T ss_dssp             GCCTTEEEEEE
T ss_pred             HhCCCcEEEEe
Confidence            34555554433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=4.6e-30  Score=268.55  Aligned_cols=378  Identities=14%  Similarity=0.061  Sum_probs=262.5

Q ss_pred             CCCCCcEEEcccCcceecCCccccC-CCC-CCEEEcccCCC-Cc-CCCcCCcCCCCCCEEEcccccceec----cCccCc
Q 047977          187 LMSNIQLVELFNNSFTGQIPSSLGQ-LKN-LQHLDLRMNAL-NS-TIPPELGLCTNLSFLALAMNQLSGG----LPLSLS  258 (569)
Q Consensus       187 ~~~~L~~L~l~~~~~~~~~~~~l~~-l~~-L~~L~l~~~~~-~~-~~~~~~~~~~~L~~l~l~~~~~~~~----~~~~l~  258 (569)
                      .+++|++|++++|.+.+..+.++.. ++. |++|++++|.. .. ........+++|++|++++|.+++.    ......
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            4556666666666554433333333 233 77777766541 11 0111223567777777777766543    222345


Q ss_pred             CCCCCCEEeCcCCcCcc---ccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEeccccccc---ccCCccccC
Q 047977          259 NLSRLNELGLSDNFLSG---EISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFS---GPIPSEIGK  332 (569)
Q Consensus       259 ~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~  332 (569)
                      .+++|+.|+++++.+.+   ......+..+++|+.|++++|.+.+ ++..+..+++|++|.++.....   ...+..+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            67889999998887751   1222335678999999999998874 5567888999999999864322   234456778


Q ss_pred             CCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCC-ccccCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 047977          333 LTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIP-PEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKF  411 (569)
Q Consensus       333 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l  411 (569)
                      +++|+.+.++++... ..+..+..+++|++|++++|.++.... ..+..+++|+.|+++++.....++.....+++|+.|
T Consensus       269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             CTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred             cccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence            899999999986443 566677889999999999999653322 345789999999998443333344445678999999


Q ss_pred             EccC-----------CcccccCCchhhccCCCCceEEcccCcCccccChhhhC-CCCCcEEEcc----CCcceee-----
Q 047977          412 SVFT-----------NNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCS-GFALEELTVN----GNNFTGS-----  470 (569)
Q Consensus       412 ~l~~-----------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----  470 (569)
                      ++++           +.++......+....++|++|+++.+.+++..+..+.. +++|+.|+++    .+.+++.     
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~  427 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG  427 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence            9994           44543322233332349999999989998776666665 8999999997    4556532     


Q ss_pred             CCccccCCCCCcEEEccCCc--cccchhhhhc-CCCCCcEEeCcCCcccccC-CcCcccCCCCCEEECCCCcceec-CCc
Q 047977          471 LPACMRNCSNLNRVRFDGNQ--FTGNITRAFG-VHPRLDFIRLSGNHFIGEI-SPDWGECRNLSNLQLDRNKISGG-IPA  545 (569)
Q Consensus       471 ~~~~l~~~~~L~~L~l~~~~--~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~-~~~  545 (569)
                      ++..+.++++|++|++++|.  +++.....++ .+++|++|++++|++++.. +..+..+++|+.|++++|.+++. .+.
T Consensus       428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  507 (592)
T 3ogk_B          428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA  507 (592)
T ss_dssp             HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred             HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence            22336779999999998765  5555554444 5899999999999987533 34468899999999999998754 333


Q ss_pred             CccCCCCCCeEeCcCCcCccc
Q 047977          546 ELGNLTRLGVLSLDSNELTGK  566 (569)
Q Consensus       546 ~l~~l~~L~~L~l~~n~~~~~  566 (569)
                      ....+++|++|++++|++++.
T Consensus       508 ~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          508 AVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHhcCccCeeECcCCcCCHH
Confidence            446799999999999999865

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=6.3e-28  Score=234.66  Aligned_cols=274  Identities=17%  Similarity=0.140  Sum_probs=159.4

Q ss_pred             CCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEE
Q 047977          260 LSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKL  339 (569)
Q Consensus       260 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  339 (569)
                      ++.....+.+++.++ .++..   -.++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..|..+++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~---~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSG---LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTT---CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-ccccc---ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            344445666666655 44432   22467777777777776555567777777777777777776556667777777777


Q ss_pred             EccCCccccccCcccccCCCCCEEEcccCcccccCC-ccccCCCCCCEEEccCCc-ccccCCccccCCCCCCEEEccCCc
Q 047977          340 DLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIP-PEIGSMASLVAFDVNTNQ-LHGELPENISRLVNLNKFSVFTNN  417 (569)
Q Consensus       340 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~l~l~~~~  417 (569)
                      ++++|.+....+..+..+++|++|++++|+++.... ..+..+++|++|++++|. +....+..+..+++|+.+++++|.
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            777777765444456777777777777777763333 356667777777777763 443334556666667777776666


Q ss_pred             ccccCCchhhccCCCCceEEcccCcCccccCh-hhhCCCCCcEEEccCCcceeeCCccc---cCCCCCcEEEccCCcccc
Q 047977          418 FSGSIPGDFGKFSPSLINVSFSNNSFSGELPY-ELCSGFALEELTVNGNNFTGSLPACM---RNCSNLNRVRFDGNQFTG  493 (569)
Q Consensus       418 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~  493 (569)
                      +++..+..+..++ +|+.|++++|.+. .++. .+..+++|+.|++++|++++..+..+   ...+.++.++++++.+.+
T Consensus       186 l~~~~~~~l~~l~-~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~  263 (353)
T 2z80_A          186 LQSYEPKSLKSIQ-NVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD  263 (353)
T ss_dssp             CCEECTTTTTTCS-EEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred             cCccCHHHHhccc-cCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence            6665566665555 6666666666654 2232 22335666666666666553322222   233445555555554433


Q ss_pred             ----chhhhhcCCCCCcEEeCcCCcccccCCcC-cccCCCCCEEECCCCcce
Q 047977          494 ----NITRAFGVHPRLDFIRLSGNHFIGEISPD-WGECRNLSNLQLDRNKIS  540 (569)
Q Consensus       494 ----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~~~  540 (569)
                          .+|..++.+++|++|++++|.++ .+|.. |+.+++|+.|++++|++.
T Consensus       264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          264 ESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             HHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence                23444455555555555555554 22322 344555555555555444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=6.9e-27  Score=223.88  Aligned_cols=234  Identities=18%  Similarity=0.247  Sum_probs=155.0

Q ss_pred             CCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEE
Q 047977          309 LTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFD  388 (569)
Q Consensus       309 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  388 (569)
                      .+.++.|++++|.++ .+|..+..+++|++|++++|.+. .++..+..+++|++|++++|.++ .++..+..+++|+.|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            456777777777776 55666666777777777777776 56666777777777777777766 5566666777777777


Q ss_pred             ccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcce
Q 047977          389 VNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFT  468 (569)
Q Consensus       389 l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  468 (569)
                      +++|...+.+|..+..      .         ..+..+..++ +|++|++++|.+. .+|..+..+++|++|++++|.++
T Consensus       157 L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~-~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          157 IRACPELTELPEPLAS------T---------DASGEHQGLV-NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEEETTCCCCCSCSEE------E---------C-CCCEEEST-TCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred             CCCCCCccccChhHhh------c---------cchhhhccCC-CCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence            7776665555544332      0         0001122233 6666666666665 56666666677777777777766


Q ss_pred             eeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCcc
Q 047977          469 GSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELG  548 (569)
Q Consensus       469 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~  548 (569)
                       .+|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+.
T Consensus       220 -~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~  298 (328)
T 4fcg_A          220 -ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA  298 (328)
T ss_dssp             -CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred             -cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence             4555666677777777777777666666677777777777777766666676777777777777777777767777777


Q ss_pred             CCCCCCeEeCcCCcC
Q 047977          549 NLTRLGVLSLDSNEL  563 (569)
Q Consensus       549 ~l~~L~~L~l~~n~~  563 (569)
                      .+++|+.+++..+.+
T Consensus       299 ~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          299 QLPANCIILVPPHLQ  313 (328)
T ss_dssp             GSCTTCEEECCGGGS
T ss_pred             hccCceEEeCCHHHH
Confidence            777777777665544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=3.7e-26  Score=228.97  Aligned_cols=248  Identities=17%  Similarity=0.157  Sum_probs=150.9

Q ss_pred             CcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEccc
Q 047977          288 LESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFF  367 (569)
Q Consensus       288 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  367 (569)
                      ...++.++..+. .+|..+  .++++.|++++|.+....+..|..+++|++|++++|.+....+..|.++++|++|++++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            455666655554 344433  25667777777766655556666667777777777766655556666666666666666


Q ss_pred             CcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCcccc
Q 047977          368 NNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGEL  447 (569)
Q Consensus       368 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  447 (569)
                      |.++......+..+++|+.|++++|.+....+..+..+++|+.|++++|...+.++                        
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~------------------------  177 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS------------------------  177 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC------------------------
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC------------------------
Confidence            66664444455666666666666666654333445555555555555432221221                        


Q ss_pred             ChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCC
Q 047977          448 PYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECR  527 (569)
Q Consensus       448 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~  527 (569)
                      +..+..+++|++|++++|+++ .+| .+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..++
T Consensus       178 ~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  255 (440)
T 3zyj_A          178 EGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ  255 (440)
T ss_dssp             TTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred             cchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence            223445556666666666665 333 356666677777777766666666666677777777777766666666666667


Q ss_pred             CCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCc
Q 047977          528 NLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT  564 (569)
Q Consensus       528 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  564 (569)
                      +|+.|++++|++++..+..+..+++|++|++++||+.
T Consensus       256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            7777777777766666666666677777777777654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=5e-26  Score=228.88  Aligned_cols=247  Identities=18%  Similarity=0.186  Sum_probs=157.3

Q ss_pred             CcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEccc
Q 047977          288 LESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFF  367 (569)
Q Consensus       288 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  367 (569)
                      ...++.++..+. .+|..+  .++++.|++++|.+++..+..|..+++|++|++++|.+....+..|.++++|++|++++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcC-ccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            345555555554 334333  24666666666666655555666666666666666666655555566666666666666


Q ss_pred             CcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCcccc
Q 047977          368 NNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGEL  447 (569)
Q Consensus       368 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  447 (569)
                      |.++......+..+++|++|++++|.+....+..+..++                         +|+.|++++|...+.+
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-------------------------~L~~L~l~~~~~l~~i  187 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP-------------------------SLMRLDLGELKKLEYI  187 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT-------------------------TCCEEECCCCTTCCEE
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC-------------------------cccEEeCCCCCCcccc
Confidence            665544444455555566665555555533333444444                         4555555543222222


Q ss_pred             C-hhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccC
Q 047977          448 P-YELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGEC  526 (569)
Q Consensus       448 ~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~  526 (569)
                      + ..+..+++|+.|++++|+++ .++ .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+
T Consensus       188 ~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  265 (452)
T 3zyi_A          188 SEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL  265 (452)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             ChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence            2 24555667777777777776 333 36677778888888888877777777888888888888888777777777888


Q ss_pred             CCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCc
Q 047977          527 RNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT  564 (569)
Q Consensus       527 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  564 (569)
                      ++|+.|++++|++++..+..+..+++|++|++++||+.
T Consensus       266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            88888888888887766677777888888888888765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=6.3e-27  Score=222.93  Aligned_cols=280  Identities=19%  Similarity=0.205  Sum_probs=201.5

Q ss_pred             CEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEeccccccccc--CCccccCCCCCCEEEc
Q 047977          264 NELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGP--IPSEIGKLTSLEKLDL  341 (569)
Q Consensus       264 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l  341 (569)
                      +.++.+++.++ .++..   -.++++.|++++|.+.+..+..+..+++|++|++++|.++..  .+..+..+++|++|++
T Consensus        10 ~~l~c~~~~l~-~ip~~---~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCS-SCCSC---CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcc-cCCCC---CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            46777777766 45543   236899999999999855445578999999999999998733  2456677999999999


Q ss_pred             cCCccccccCcccccCCCCCEEEcccCcccccCC-ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccc
Q 047977          342 SGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIP-PEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSG  420 (569)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  420 (569)
                      ++|.+. ..+..+..+++|++|++++|.++.... ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus        86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence            999988 456678899999999999999986544 578899999999999999987777778888899999999888875


Q ss_pred             -cCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhh
Q 047977          421 -SIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAF  499 (569)
Q Consensus       421 -~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l  499 (569)
                       ..|..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+
T Consensus       165 ~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          165 NFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             GEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             ccchhHHhhCc-CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence             4555665555 77777777777765556666666777777777777765444556667777777777777766666666


Q ss_pred             cCCC-CCcEEeCcCCcccccCCc-C-cccCCCCCEEECCCCcceecCCcCccC
Q 047977          500 GVHP-RLDFIRLSGNHFIGEISP-D-WGECRNLSNLQLDRNKISGGIPAELGN  549 (569)
Q Consensus       500 ~~l~-~L~~L~l~~~~~~~~~~~-~-l~~~~~L~~L~l~~n~~~~~~~~~l~~  549 (569)
                      ..++ +|++|++++|++...-.. . ..-+...+.+.+..+.+.-..|..+++
T Consensus       244 ~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g  296 (306)
T 2z66_A          244 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG  296 (306)
T ss_dssp             CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred             HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence            6663 677777777766532110 0 111223334444555555445555444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=2e-26  Score=220.68  Aligned_cols=236  Identities=17%  Similarity=0.208  Sum_probs=198.4

Q ss_pred             CCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEE
Q 047977          284 NWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSL  363 (569)
Q Consensus       284 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  363 (569)
                      ..+.++.|+++++.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .++..+..+++|++|
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            3578999999999988 67777888999999999999999 88888999999999999999998 778889999999999


Q ss_pred             EcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcC
Q 047977          364 QLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSF  443 (569)
Q Consensus       364 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  443 (569)
                      ++++|...+.++..+..      .         .....+..+++|+.|++++|.++ .+|..+..++ +|++|++++|.+
T Consensus       156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~N~l  218 (328)
T 4fcg_A          156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ-NLKSLKIRNSPL  218 (328)
T ss_dssp             EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT-TCCEEEEESSCC
T ss_pred             ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCC-CCCEEEccCCCC
Confidence            99998877666654432      1         11234566777777777777777 6666676666 888888888887


Q ss_pred             ccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCc
Q 047977          444 SGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDW  523 (569)
Q Consensus       444 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l  523 (569)
                      . .++..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..++.+++|++|++++|++.+.+|..+
T Consensus       219 ~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          219 S-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             C-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             C-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence            7 466678888899999999988888888889999999999999999888889889999999999999999988999999


Q ss_pred             ccCCCCCEEECCCCcce
Q 047977          524 GECRNLSNLQLDRNKIS  540 (569)
Q Consensus       524 ~~~~~L~~L~l~~n~~~  540 (569)
                      +.+++|+.+++..+.+.
T Consensus       298 ~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          298 AQLPANCIILVPPHLQA  314 (328)
T ss_dssp             GGSCTTCEEECCGGGSC
T ss_pred             hhccCceEEeCCHHHHH
Confidence            99999999998877655

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=4.1e-26  Score=221.82  Aligned_cols=253  Identities=19%  Similarity=0.186  Sum_probs=127.8

Q ss_pred             CCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEc
Q 047977          262 RLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDL  341 (569)
Q Consensus       262 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  341 (569)
                      +|+.|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        53 ~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           53 AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             cCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            5555555555554 333333555555555555555555444445555555555555555555333333555555555555


Q ss_pred             cCCccccccC-cccccCCCCCEEEcccCc-ccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccc
Q 047977          342 SGNQLSGTIP-PTLWNLTNLLSLQLFFNN-LSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFS  419 (569)
Q Consensus       342 ~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~  419 (569)
                      ++|.+..... ..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++|+.+++++|.+.
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            5555553322 245555555555555552 33333445555555555555555555444555555555555555555553


Q ss_pred             ccCCchhhccCCCCceEEcccCcCccccChhh---hCCCCCcEEEccCCccee----eCCccccCCCCCcEEEccCCccc
Q 047977          420 GSIPGDFGKFSPSLINVSFSNNSFSGELPYEL---CSGFALEELTVNGNNFTG----SLPACMRNCSNLNRVRFDGNQFT  492 (569)
Q Consensus       420 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~  492 (569)
                       .++..+....++|+.|++++|.+.+..+..+   .....++.++++++.+.+    .+|..+.++++|++|++++|.++
T Consensus       212 -~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~  290 (353)
T 2z80_A          212 -LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK  290 (353)
T ss_dssp             -THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred             -cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence             2222222222355555555555543322211   123445555555554433    23344555555555555555555


Q ss_pred             cchhhhhcCCCCCcEEeCcCCccc
Q 047977          493 GNITRAFGVHPRLDFIRLSGNHFI  516 (569)
Q Consensus       493 ~~~~~~l~~l~~L~~L~l~~~~~~  516 (569)
                      ...+..|+.+++|++|++++|++.
T Consensus       291 ~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          291 SVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCHHHHhcCCCCCEEEeeCCCcc
Confidence            333333455555555555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=3.5e-26  Score=215.35  Aligned_cols=268  Identities=18%  Similarity=0.209  Sum_probs=177.5

Q ss_pred             cEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccC
Q 047977          289 ESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFN  368 (569)
Q Consensus       289 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  368 (569)
                      +.++.++..+. .+|..+  .+++++|++++|.+++..+..|..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            34555554444 233222  346666666666666544455666666666666666666555556666666666666666


Q ss_pred             c-ccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCcccc
Q 047977          369 N-LSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGEL  447 (569)
Q Consensus       369 ~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  447 (569)
                      . +....+..+..+++|++|++++|.+.+..+..+..+++|+.+++++|.+++..+..+..++ +|+.|++++|.+.+..
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-NLTHLFLHGNRISSVP  169 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCEEC
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC-CccEEECCCCcccccC
Confidence            5 4444455566666677777776666655555666677777777777777655444555555 7888888888777544


Q ss_pred             ChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCC
Q 047977          448 PYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECR  527 (569)
Q Consensus       448 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~  527 (569)
                      +..+..+++|+.|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|++...-+.. ....
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~  248 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA  248 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHH
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHH
Confidence            455777888889999888888777888888899999999999888777777888999999999999876332211 1123


Q ss_pred             CCCEEECCCCcceecCCcCccC--CCCCCeEeCcCC
Q 047977          528 NLSNLQLDRNKISGGIPAELGN--LTRLGVLSLDSN  561 (569)
Q Consensus       528 ~L~~L~l~~n~~~~~~~~~l~~--l~~L~~L~l~~n  561 (569)
                      .++.+..+.+.+....|..+++  +..++..++.||
T Consensus       249 ~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          249 WLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             HHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             HHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence            3555556777777677777654  555666666655

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.7e-25  Score=210.64  Aligned_cols=224  Identities=20%  Similarity=0.197  Sum_probs=143.1

Q ss_pred             cEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCC
Q 047977          313 QYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTN  392 (569)
Q Consensus       313 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  392 (569)
                      +.++.+++.++ .+|..+  .++|++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            56677676666 444433  357888888888887666667777888888888888777666667777777888888777


Q ss_pred             c-ccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeC
Q 047977          393 Q-LHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSL  471 (569)
Q Consensus       393 ~-~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  471 (569)
                      . +....+..+..+++|+.|++++|.+++..+..+..++ +|++|++++|.+.+..+..+..+++|++|++++|+++...
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc-CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence            6 5544455666677777777777766655555555554 6666666666665443344555566666666666665444


Q ss_pred             CccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcce
Q 047977          472 PACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS  540 (569)
Q Consensus       472 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  540 (569)
                      +..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            444556666666666666665555555666666666666666665444444556666666666666555

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=6.3e-29  Score=260.12  Aligned_cols=436  Identities=14%  Similarity=0.120  Sum_probs=252.8

Q ss_pred             EEEcccCccccCCchhhhhcCCCCcEEeccCCccccc---CCc------------CCCCCCCCCEEEccCCccccCCCcC
Q 047977          120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGK---LSP------------NVSKLSNLTVLRLATNKFSGPIPGD  184 (569)
Q Consensus       120 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~------------~l~~~~~L~~L~l~~~~~~~~~~~~  184 (569)
                      .+++..+..  ..+..++..+++|+++++.++.....   .+.            ....+++|++|+++++.++......
T Consensus        47 ~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~  124 (594)
T 2p1m_B           47 KVFIGNCYA--VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL  124 (594)
T ss_dssp             EEEESSTTS--SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred             EEeeccccc--cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence            455544332  34556678889999999998753211   111            1235678888888888766544444


Q ss_pred             cC-CCCCCcEEEcccCc-ceec-CCccccCCCCCCEEEcccCCCCcCCCcCC----cCCCCCCEEEccccc--cee-ccC
Q 047977          185 IG-LMSNIQLVELFNNS-FTGQ-IPSSLGQLKNLQHLDLRMNALNSTIPPEL----GLCTNLSFLALAMNQ--LSG-GLP  254 (569)
Q Consensus       185 l~-~~~~L~~L~l~~~~-~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~l~l~~~~--~~~-~~~  254 (569)
                      +. .+++|++|++.+|. +... ++.....+++|++|++++|.+.+....++    ..+++|++++++++.  +.. ...
T Consensus       125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~  204 (594)
T 2p1m_B          125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE  204 (594)
T ss_dssp             HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred             HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence            43 57888888888883 3321 33334467888888888887655443333    356688888887775  211 111


Q ss_pred             ccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCc-------ceeeCCccccCCCCCcEE-ecccccccccC
Q 047977          255 LSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNS-------FMGNIPPEIGLLTKLQYL-FLYRNHFSGPI  326 (569)
Q Consensus       255 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~  326 (569)
                      .....+++|+.|++++|...+.+ ...+..+++|+.+++..+.       +. .++..+.++++|+.+ .+.+.... .+
T Consensus       205 ~l~~~~~~L~~L~L~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~~-~l  281 (594)
T 2p1m_B          205 RLVTRCPNLKSLKLNRAVPLEKL-ATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVPA-YL  281 (594)
T ss_dssp             HHHHHCTTCCEEECCTTSCHHHH-HHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCGG-GG
T ss_pred             HHHHhCCCCcEEecCCCCcHHHH-HHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccchh-hH
Confidence            11234678888888877433232 2335667778888765543       11 122345667777777 34332221 33


Q ss_pred             CccccCCCCCCEEEccCCccccccC-cccccCCCCCEEEcccCccccc-CCccccCCCCCCEEEccC---------Cccc
Q 047977          327 PSEIGKLTSLEKLDLSGNQLSGTIP-PTLWNLTNLLSLQLFFNNLSGT-IPPEIGSMASLVAFDVNT---------NQLH  395 (569)
Q Consensus       327 ~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~---------~~~~  395 (569)
                      +..+..+++|++|++++|.+.+... ..+..+++|++|++.+| +... .......+++|++|++.+         +.++
T Consensus       282 ~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~  360 (594)
T 2p1m_B          282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT  360 (594)
T ss_dssp             GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCC
T ss_pred             HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCC
Confidence            3344456788888888877553322 22456778888888877 3321 222223467788887743         2333


Q ss_pred             ccCCccc-cCCCCCCEEEccCCcccccCCchhhccCCCCceEEcc--c----CcCcc-----ccChhhhCCCCCcEEEcc
Q 047977          396 GELPENI-SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFS--N----NSFSG-----ELPYELCSGFALEELTVN  463 (569)
Q Consensus       396 ~~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~--~----~~~~~-----~~~~~~~~~~~L~~L~l~  463 (569)
                      +.....+ ..+++|+.+.+..+.+++.....+....++|+.|+++  +    +.+++     .++..+..+++|+.|+++
T Consensus       361 ~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~  440 (594)
T 2p1m_B          361 EQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS  440 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECC
T ss_pred             HHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeec
Confidence            2211122 2367777777766666654444444322377777777  2    23331     111224556777777776


Q ss_pred             CCcceeeCCccccC-CCCCcEEEccCCccccchhhhh-cCCCCCcEEeCcCCcccccCCc-CcccCCCCCEEECCCCcce
Q 047977          464 GNNFTGSLPACMRN-CSNLNRVRFDGNQFTGNITRAF-GVHPRLDFIRLSGNHFIGEISP-DWGECRNLSNLQLDRNKIS  540 (569)
Q Consensus       464 ~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~n~~~  540 (569)
                      + .+++.....+.. +++|++|++++|.+++.....+ ..+++|++|++++|++++.... ....+++|+.|++++|+++
T Consensus       441 ~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          441 G-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             S-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             C-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            6 444333333433 6777777777777765544444 5677777777777777543333 3445677777777777775


Q ss_pred             ecCCcCc-cCCCCCCeEeCcCCc
Q 047977          541 GGIPAEL-GNLTRLGVLSLDSNE  562 (569)
Q Consensus       541 ~~~~~~l-~~l~~L~~L~l~~n~  562 (569)
                      ......+ +.+++|+...+..+.
T Consensus       520 ~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          520 FGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             HHHHHHHHHHCTTEEEEEECSSS
T ss_pred             HHHHHHHHHhCCCCEEEEecCCC
Confidence            4433334 456666665555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=5.3e-25  Score=220.56  Aligned_cols=248  Identities=21%  Similarity=0.222  Sum_probs=164.4

Q ss_pred             CCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcc
Q 047977           21 NLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLC  100 (569)
Q Consensus        21 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  100 (569)
                      ..+.++.++..+. .+|..+.  +++++|++++|.+....+..|.++++|++|++++|.+..+....|.++++|++|+++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            3456666666666 4455444  566777777777665555666777777777777776666666666677777777777


Q ss_pred             cccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCc-ccccCCcCCCCCCCCCEEEccCCcccc
Q 047977          101 YNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQ-FQGKLSPNVSKLSNLTVLRLATNKFSG  179 (569)
Q Consensus       101 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~  179 (569)
                      +|.+....+..+..+++|++|++++|.+. .++...|..+++|++|+++++. +.......+..+++|++|++++|.+..
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence            77766444455666777777777777666 3444455667777777776633 333333456667777777777776653


Q ss_pred             CCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcC
Q 047977          180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSN  259 (569)
Q Consensus       180 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~  259 (569)
                      . + .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..
T Consensus       200 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  277 (440)
T 3zyj_A          200 I-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP  277 (440)
T ss_dssp             C-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred             c-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence            3 2 4666677777777777777666666777777777777777777666667777777777777777777666666667


Q ss_pred             CCCCCEEeCcCCcCc
Q 047977          260 LSRLNELGLSDNFLS  274 (569)
Q Consensus       260 ~~~L~~L~l~~~~~~  274 (569)
                      +++|+.|++++|.+.
T Consensus       278 l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          278 LHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTCCEEECCSSCEE
T ss_pred             ccCCCEEEcCCCCcc
Confidence            777777777777654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=4.2e-25  Score=222.11  Aligned_cols=248  Identities=22%  Similarity=0.210  Sum_probs=189.6

Q ss_pred             CCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcc
Q 047977           21 NLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLC  100 (569)
Q Consensus        21 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  100 (569)
                      ..+.++.++..++ .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+....+..|.++++|++|+++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            3567777777777 4555554  578888888888876667778888888888888888877777778888888888888


Q ss_pred             cccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCC-cccccCCcCCCCCCCCCEEEccCCcccc
Q 047977          101 YNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDN-QFQGKLSPNVSKLSNLTVLRLATNKFSG  179 (569)
Q Consensus       101 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~  179 (569)
                      +|.+....+..+..+++|++|++++|.+. .++...|..+++|++|+++++ .+.......+..+++|+.|++++|.+..
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence            88887655666777888888888888877 455556678888888888874 3443344467778888888888887764


Q ss_pred             CCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcC
Q 047977          180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSN  259 (569)
Q Consensus       180 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~  259 (569)
                      .  ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.+++++|.++...+..+..
T Consensus       211 ~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  288 (452)
T 3zyi_A          211 M--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP  288 (452)
T ss_dssp             C--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred             c--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence            4  34677888888888888888777777888888888888888888777777888888888888888888766667778


Q ss_pred             CCCCCEEeCcCCcCc
Q 047977          260 LSRLNELGLSDNFLS  274 (569)
Q Consensus       260 ~~~L~~L~l~~~~~~  274 (569)
                      +++|+.|++++|.+.
T Consensus       289 l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          289 LRYLVELHLHHNPWN  303 (452)
T ss_dssp             CTTCCEEECCSSCEE
T ss_pred             ccCCCEEEccCCCcC
Confidence            888888888888764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=4.9e-29  Score=260.91  Aligned_cols=439  Identities=14%  Similarity=0.091  Sum_probs=295.8

Q ss_pred             cEEEcccccccccCCccccCCCCCCEEEcccCccccCC---c-----------hhhhhcCCCCcEEeccCCcccccCCcC
Q 047977           95 THLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLI---P-----------ERLFTNLGKLEYLNLTDNQFQGKLSPN  160 (569)
Q Consensus        95 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~-----------~~~~~~~~~L~~L~l~~~~~~~~~~~~  160 (569)
                      +.++++.+... .....+..+++|++|++.++......   +           ..++..+++|++|+++++.+.+.....
T Consensus        46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~  124 (594)
T 2p1m_B           46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL  124 (594)
T ss_dssp             CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred             eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence            35666555432 22334667899999999987532111   1           233467899999999999877544444


Q ss_pred             CC-CCCCCCEEEccCC-ccccC-CCcCcCCCCCCcEEEcccCcceecCCcccc----CCCCCCEEEcccCC--CCcC-CC
Q 047977          161 VS-KLSNLTVLRLATN-KFSGP-IPGDIGLMSNIQLVELFNNSFTGQIPSSLG----QLKNLQHLDLRMNA--LNST-IP  230 (569)
Q Consensus       161 l~-~~~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~----~l~~L~~L~l~~~~--~~~~-~~  230 (569)
                      +. .+++|++|++++| .+... .+.....+++|++|++++|.+.+..+.++.    .+++|++|++++|.  +... ..
T Consensus       125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~  204 (594)
T 2p1m_B          125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE  204 (594)
T ss_dssp             HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred             HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence            43 5899999999998 44322 222334789999999999997764444443    67799999999886  2211 11


Q ss_pred             cCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCc------cccCccccCCCCCCcEE-EccCCcceeeCC
Q 047977          231 PELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLS------GEISANLIGNWTELESL-QIQNNSFMGNIP  303 (569)
Q Consensus       231 ~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~  303 (569)
                      .....+++|+++++.+|......+..+..+++|+.|.+..+...      ..+.. .+.++++|+.+ .+.+... ..++
T Consensus       205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~l~~~~~L~~Ls~~~~~~~-~~l~  282 (594)
T 2p1m_B          205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV-ALSGCKELRCLSGFWDAVP-AYLP  282 (594)
T ss_dssp             HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH-HHHTCTTCCEEECCBTCCG-GGGG
T ss_pred             HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH-HHhcCCCcccccCCcccch-hhHH
Confidence            12345799999999988332235566778899999997765420      11222 36788999998 4443322 1234


Q ss_pred             ccccCCCCCcEEecccccccccC-CccccCCCCCCEEEccCCcccccc-CcccccCCCCCEEEccc---------Ccccc
Q 047977          304 PEIGLLTKLQYLFLYRNHFSGPI-PSEIGKLTSLEKLDLSGNQLSGTI-PPTLWNLTNLLSLQLFF---------NNLSG  372 (569)
Q Consensus       304 ~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~---------~~~~~  372 (569)
                      ..+..+++|++|++++|.+++.. ...+..+++|++|++++| +.+.. ......+++|++|++.+         +.++.
T Consensus       283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~  361 (594)
T 2p1m_B          283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE  361 (594)
T ss_dssp             GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred             HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence            44446799999999999876432 223568899999999998 44332 22334689999999954         23332


Q ss_pred             cCCccc-cCCCCCCEEEccCCcccccCCcccc-CCCCCCEEEcc--C----CcccccC-----CchhhccCCCCceEEcc
Q 047977          373 TIPPEI-GSMASLVAFDVNTNQLHGELPENIS-RLVNLNKFSVF--T----NNFSGSI-----PGDFGKFSPSLINVSFS  439 (569)
Q Consensus       373 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~l~l~--~----~~~~~~~-----~~~~~~~~~~L~~L~l~  439 (569)
                      .....+ ..+++|+.|.+..+.+++.....+. .+++|+.++++  +    +.++...     +..+..++ +|+.|+++
T Consensus       362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~L~~L~L~  440 (594)
T 2p1m_B          362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK-DLRRLSLS  440 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCT-TCCEEECC
T ss_pred             HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCC-CccEEeec
Confidence            211122 3489999998888888755444443 58999999998  3    3444211     11234455 99999998


Q ss_pred             cCcCccccChhhhC-CCCCcEEEccCCcceeeCCccc-cCCCCCcEEEccCCccccchhh-hhcCCCCCcEEeCcCCccc
Q 047977          440 NNSFSGELPYELCS-GFALEELTVNGNNFTGSLPACM-RNCSNLNRVRFDGNQFTGNITR-AFGVHPRLDFIRLSGNHFI  516 (569)
Q Consensus       440 ~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~  516 (569)
                      + .+++.....+.. +++|+.|++++|.+++.....+ .++++|++|++++|.+++.... ....+++|++|++++|+++
T Consensus       441 ~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          441 G-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             S-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             C-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            7 666555555655 8899999999999875544444 6799999999999999655443 4556899999999999986


Q ss_pred             ccCCcCc-ccCCCCCEEECCCCcc
Q 047977          517 GEISPDW-GECRNLSNLQLDRNKI  539 (569)
Q Consensus       517 ~~~~~~l-~~~~~L~~L~l~~n~~  539 (569)
                      ......+ ..+|.|+...+..+.-
T Consensus       520 ~~~~~~l~~~lp~l~i~~~~~~~~  543 (594)
T 2p1m_B          520 FGACKLLGQKMPKLNVEVIDERGA  543 (594)
T ss_dssp             HHHHHHHHHHCTTEEEEEECSSSC
T ss_pred             HHHHHHHHHhCCCCEEEEecCCCc
Confidence            4444444 5678887777766643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.9e-27  Score=225.94  Aligned_cols=240  Identities=16%  Similarity=0.144  Sum_probs=110.6

Q ss_pred             cCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCC
Q 047977          282 IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLL  361 (569)
Q Consensus       282 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  361 (569)
                      +..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+  +..+++|++|++++|.+.+.     ...++|+
T Consensus        30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~  102 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIE  102 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCC
T ss_pred             hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcC
Confidence            4444555555555555554433445555555555555555543321  45555555555555554421     1224555


Q ss_pred             EEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccC
Q 047977          362 SLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNN  441 (569)
Q Consensus       362 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  441 (569)
                      +|++++|.++....   ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+.              
T Consensus       103 ~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------------  165 (317)
T 3o53_A          103 TLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA--------------  165 (317)
T ss_dssp             EEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG--------------
T ss_pred             EEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh--------------
Confidence            55555555443221   1234455555555544433333444444444444444444433333332              


Q ss_pred             cCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCc
Q 047977          442 SFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISP  521 (569)
Q Consensus       442 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  521 (569)
                                ..+++|++|++++|.++.. + ....+++|++|++++|.+++..+ .+..+++|++|++++|.+. .+|.
T Consensus       166 ----------~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~  231 (317)
T 3o53_A          166 ----------ASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEK  231 (317)
T ss_dssp             ----------GGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECT
T ss_pred             ----------hccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhh
Confidence                      1344455555555544422 1 11224455555555555543222 2444555555555555544 2344


Q ss_pred             CcccCCCCCEEECCCCcce-ecCCcCccCCCCCCeEeCc
Q 047977          522 DWGECRNLSNLQLDRNKIS-GGIPAELGNLTRLGVLSLD  559 (569)
Q Consensus       522 ~l~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~  559 (569)
                      .+..+++|+.|++++|++. +..+..+..+++|+.|+++
T Consensus       232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            4444555555555555544 3344444444444444444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=4e-27  Score=224.41  Aligned_cols=203  Identities=19%  Similarity=0.224  Sum_probs=137.8

Q ss_pred             CCCCCEEEcccCcccccCCccc--cCCCCCCEEEccCCcccccCCccccCC-----CCCCEEEccCCcccccCCchhhcc
Q 047977          357 LTNLLSLQLFFNNLSGTIPPEI--GSMASLVAFDVNTNQLHGELPENISRL-----VNLNKFSVFTNNFSGSIPGDFGKF  429 (569)
Q Consensus       357 ~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~l~l~~~~~~~~~~~~~~~~  429 (569)
                      +++|++|++++|.+++..+..+  ..+++|+.|++++|.+.+. |..+..+     ++|++|++++|.+.+..+..+..+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            4455555555555544344333  4455555555555555533 4444433     666666666666665555555555


Q ss_pred             CCCCceEEcccCcCccc--cChhh--hCCCCCcEEEccCCccee---eCCccccCCCCCcEEEccCCccccchh-hhhcC
Q 047977          430 SPSLINVSFSNNSFSGE--LPYEL--CSGFALEELTVNGNNFTG---SLPACMRNCSNLNRVRFDGNQFTGNIT-RAFGV  501 (569)
Q Consensus       430 ~~~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~  501 (569)
                      + +|++|++++|++.+.  .+..+  ..+++|++|++++|+++.   .....+.++++|++|++++|.+.+..+ ..+..
T Consensus       173 ~-~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          173 P-ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             S-SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             C-CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence            5 777777777765443  22233  567888888888888772   112334677889999999998887664 45667


Q ss_pred             CCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCccc
Q 047977          502 HPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGK  566 (569)
Q Consensus       502 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  566 (569)
                      +++|++|++++|.++ .+|..+.  ++|+.|++++|++++. |. +..+++|++|++++|+|+++
T Consensus       252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            899999999999988 6677766  8899999999999865 65 88999999999999999874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=1.7e-25  Score=213.69  Aligned_cols=218  Identities=21%  Similarity=0.194  Sum_probs=153.1

Q ss_pred             CCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 047977          332 KLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKF  411 (569)
Q Consensus       332 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l  411 (569)
                      .+++|++|++++|.+....+..|..+++|++|++++|.+++..+  +..+++|++|++++|.+.+     +...++|+.+
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-----l~~~~~L~~L  104 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETL  104 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-----EEECTTCCEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-----ccCCCCcCEE
Confidence            33444444444444443333444444555555555554442221  4445555555555555442     1223566666


Q ss_pred             EccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccc-cCCCCCcEEEccCCc
Q 047977          412 SVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACM-RNCSNLNRVRFDGNQ  490 (569)
Q Consensus       412 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~  490 (569)
                      ++++|.+++..+..   + ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.
T Consensus       105 ~l~~n~l~~~~~~~---~-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  180 (317)
T 3o53_A          105 HAANNNISRVSCSR---G-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (317)
T ss_dssp             ECCSSCCSEEEECC---C-SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             ECCCCccCCcCccc---c-CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence            66666665433322   2 378888888888876666677778999999999999987666666 478999999999999


Q ss_pred             cccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCc
Q 047977          491 FTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT  564 (569)
Q Consensus       491 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  564 (569)
                      +++...  ...+++|++|++++|.+.+ +|..+..+++|+.|++++|.+++ +|..+..+++|++|++++|++.
T Consensus       181 l~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          181 IYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCB
T ss_pred             Cccccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCcc
Confidence            986532  3469999999999999985 45669999999999999999995 6788999999999999999998

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=2.4e-23  Score=214.16  Aligned_cols=263  Identities=26%  Similarity=0.350  Sum_probs=122.2

Q ss_pred             CCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEec
Q 047977          238 NLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFL  317 (569)
Q Consensus       238 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  317 (569)
                      +++.++++++.++ .++..+.  ++|+.|++++|.++ .++.    .+++|+.|++++|.+.+ +|.   .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence            3556666666655 3333232  45666666666554 3332    34556666666655542 332   3455566666


Q ss_pred             ccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCccccc
Q 047977          318 YRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGE  397 (569)
Q Consensus       318 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  397 (569)
                      ++|.+++ +|.   .+++|+.|++++|.++. ++.   .+++|++|++++|.++. ++.   .+++|+.|++++|.+. .
T Consensus       109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~  175 (622)
T 3g06_A          109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-S  175 (622)
T ss_dssp             CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-C
T ss_pred             cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-C
Confidence            6555552 222   34455555555555542 222   12555555555555542 111   2345555555555554 2


Q ss_pred             CCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccC
Q 047977          398 LPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRN  477 (569)
Q Consensus       398 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  477 (569)
                      +|   ..+++|+.|++++|.+++ +|.    .+++|+.|++++|.+. .++.   .+++|+.|++++|.++ .+|   ..
T Consensus       176 l~---~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~-~lp---~~  239 (622)
T 3g06_A          176 LP---MLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT-SLP---VL  239 (622)
T ss_dssp             CC---CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCS-CCC---CC
T ss_pred             Cc---ccCCCCcEEECCCCCCCC-CCC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccC-cCC---CC
Confidence            33   233455555555555442 211    1124555555555444 2221   1234555555555444 223   22


Q ss_pred             CCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcC
Q 047977          478 CSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAE  546 (569)
Q Consensus       478 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~  546 (569)
                      +++|+.|++++|.++. +|.   .+++|++|++++|.++ .+|..+..+++|+.|++++|.+++..|..
T Consensus       240 l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~  303 (622)
T 3g06_A          240 PSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  303 (622)
T ss_dssp             CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred             CCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence            3445555555554442 222   3444555555555444 33444444455555555555444444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=3.4e-25  Score=223.72  Aligned_cols=235  Identities=20%  Similarity=0.150  Sum_probs=136.9

Q ss_pred             CCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEc
Q 047977          310 TKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDV  389 (569)
Q Consensus       310 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  389 (569)
                      ++|+.|++++|.+++..|..|..+++|++|++++|.+....+  +..+++|++|++++|.++..     ...++|+.|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCEEEC
Confidence            355555555555554444455555555555555555543322  55555555555555555421     12255666666


Q ss_pred             cCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhh-CCCCCcEEEccCCcce
Q 047977          390 NTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELC-SGFALEELTVNGNNFT  468 (569)
Q Consensus       390 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~  468 (569)
                      ++|.+.+..+   ..+++|+.|++++|.+++..|..+..++ +|+.|++++|.+.+..|..+. .+++|+.|++++|.++
T Consensus       107 ~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          107 ANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             cCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCC-CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            6665553322   2345666666666666655555555554 666666666666655555554 4666777777777666


Q ss_pred             eeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcce-ecCCcCc
Q 047977          469 GSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS-GGIPAEL  547 (569)
Q Consensus       469 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~~~l  547 (569)
                      +..  ....+++|+.|++++|.+++..+ .++.+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. +..|..+
T Consensus       183 ~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          183 DVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             EEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             ccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            432  22346677777777777765433 36666777777777777663 5556666677777777777666 4455555


Q ss_pred             cCCCCCCeEeCc
Q 047977          548 GNLTRLGVLSLD  559 (569)
Q Consensus       548 ~~l~~L~~L~l~  559 (569)
                      ..++.|+.+++.
T Consensus       259 ~~l~~L~~l~~~  270 (487)
T 3oja_A          259 SKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             HhCCCCcEEecc
Confidence            666666665554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=1.7e-23  Score=215.26  Aligned_cols=268  Identities=26%  Similarity=0.354  Sum_probs=178.1

Q ss_pred             CCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEc
Q 047977          214 NLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQI  293 (569)
Q Consensus       214 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  293 (569)
                      .++.|+++++.+... +..+.  ++|+.|++++|.++.. +.   .+++|+.|++++|.++ .++.    .+++|+.|++
T Consensus        41 ~l~~L~ls~n~L~~l-p~~l~--~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCSCC-CSCCC--TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEE
T ss_pred             CCcEEEecCCCcCcc-ChhhC--CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEEC
Confidence            477788877777643 33332  6778888887777633 22   4577888888877766 3433    5677888888


Q ss_pred             cCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCccccc
Q 047977          294 QNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGT  373 (569)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  373 (569)
                      ++|.+.+ +|.   .+++|+.|++++|.++. +|..   +++|++|++++|.+.. ++.   .+++|+.|++++|.++. 
T Consensus       109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-  175 (622)
T 3g06_A          109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-  175 (622)
T ss_dssp             CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred             cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence            8777764 333   45677788888777763 4432   4677888888877763 222   34677778888877763 


Q ss_pred             CCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhC
Q 047977          374 IPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCS  453 (569)
Q Consensus       374 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  453 (569)
                      ++   ..+++|+.|++++|.+. .++.   ..++|+.|.+++|.++. +|.    .+++|+.|++++|.+.+ +|   ..
T Consensus       176 l~---~~~~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~~-l~~----~~~~L~~L~Ls~N~L~~-lp---~~  239 (622)
T 3g06_A          176 LP---MLPSGLQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLTS-LPA----LPSGLKELIVSGNRLTS-LP---VL  239 (622)
T ss_dssp             CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSC-CC---CC
T ss_pred             Cc---ccCCCCcEEECCCCCCC-CCCC---ccchhhEEECcCCcccc-cCC----CCCCCCEEEccCCccCc-CC---CC
Confidence            33   34577888888877776 3433   24677778887777763 332    22477888888877763 44   34


Q ss_pred             CCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCC
Q 047977          454 GFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECR  527 (569)
Q Consensus       454 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~  527 (569)
                      +++|+.|++++|.++ .+|.   .+++|+.|++++|.++ .+|..+..+++|+.|++++|++.+..|..+..++
T Consensus       240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            567788888888777 4554   5577888888888777 5566777788888888888877766666555433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=2.1e-23  Score=195.26  Aligned_cols=209  Identities=21%  Similarity=0.195  Sum_probs=126.1

Q ss_pred             CCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEc
Q 047977          334 TSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSV  413 (569)
Q Consensus       334 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l  413 (569)
                      ++|++|++++|.+....+..|.++++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.+++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            36777777777776555556667777777777777666555555666666666666666666444455555555555555


Q ss_pred             cCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceee-CCccccCCCCCcEEEccCCccc
Q 047977          414 FTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGS-LPACMRNCSNLNRVRFDGNQFT  492 (569)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~  492 (569)
                      ++|.+.+..+                         ..+..+++|++|++++|.+... +|..+.++++|++|++++|.+.
T Consensus       108 ~~n~l~~~~~-------------------------~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          108 VETNLASLEN-------------------------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             TTSCCCCSTT-------------------------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCCccccCc-------------------------hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            5555543332                         2344455566666666655532 3555666666666666666666


Q ss_pred             cchhhhhcCCCCCc----EEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccCC
Q 047977          493 GNITRAFGVHPRLD----FIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKNS  568 (569)
Q Consensus       493 ~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  568 (569)
                      +..+..+..+++|+    +|++++|.+.+..+..+.. .+|+.|++++|.+++..+..++.+++|++|++++|++++.-|
T Consensus       163 ~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             EECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            55555555444444    6667777666444433333 367777777777665555556667777777777777766543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=1.2e-25  Score=214.30  Aligned_cols=249  Identities=18%  Similarity=0.165  Sum_probs=141.5

Q ss_pred             CCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCccee-eCCcccc-------CCCCCcEEecccccccccCCccc
Q 047977          259 NLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG-NIPPEIG-------LLTKLQYLFLYRNHFSGPIPSEI  330 (569)
Q Consensus       259 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~l  330 (569)
                      ..++|+.++++++.+  .++.....   .++.++++++.+.. ..+..+.       .+++|++|++++|.+++..|..+
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             cCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            344566666666655  33332111   15555666655532 2332222       35566666666666655555443


Q ss_pred             --cCCCCCCEEEccCCccccccCcccccC-----CCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCcccc
Q 047977          331 --GKLTSLEKLDLSGNQLSGTIPPTLWNL-----TNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENIS  403 (569)
Q Consensus       331 --~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  403 (569)
                        ..+++|++|++++|.+... +..+..+     ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+    
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----  190 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG----  190 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH----
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH----
Confidence              5556666666666665543 4444444     555555555555554444455555555555555555432210    


Q ss_pred             CCCCCCEEEccCCcccccCCchh--hccCCCCceEEcccCcCcc--ccC-hhhhCCCCCcEEEccCCcceeeCC-ccccC
Q 047977          404 RLVNLNKFSVFTNNFSGSIPGDF--GKFSPSLINVSFSNNSFSG--ELP-YELCSGFALEELTVNGNNFTGSLP-ACMRN  477 (569)
Q Consensus       404 ~l~~L~~l~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~--~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~  477 (569)
                                        .+..+  ..++ +|++|++++|.+.+  .++ ..+..+++|++|++++|++++..+ ..+..
T Consensus       191 ------------------~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          191 ------------------LISALCPLKFP-TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             ------------------HHHHSCTTSCT-TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             ------------------HHHHHHhccCC-CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence                              11111  2232 56666666665542  112 223456777888888887775443 44566


Q ss_pred             CCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCccee
Q 047977          478 CSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISG  541 (569)
Q Consensus       478 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  541 (569)
                      +++|++|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus       252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            778888888888887 5565554  7888888888888755 44 7788888888888888774

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=2.5e-24  Score=217.35  Aligned_cols=219  Identities=21%  Similarity=0.183  Sum_probs=191.7

Q ss_pred             cCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 047977          331 GKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNK  410 (569)
Q Consensus       331 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  410 (569)
                      ..+++|++|++++|.+....+..|..+++|++|++++|.+++..+  +..+++|+.|++++|.+.+.     ...++|+.
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~  103 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIET  103 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCE
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCE
Confidence            345589999999999998778899999999999999999986544  88999999999999998842     33489999


Q ss_pred             EEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCcccc-CCCCCcEEEccCC
Q 047977          411 FSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMR-NCSNLNRVRFDGN  489 (569)
Q Consensus       411 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~  489 (569)
                      |++++|.+++..+..   + ++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|..+. .+++|++|++++|
T Consensus       104 L~L~~N~l~~~~~~~---l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          104 LHAANNNISRVSCSR---G-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             EECCSSCCCCEEECC---C-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EECcCCcCCCCCccc---c-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            999999998765443   3 4999999999999987787888899999999999999987777775 7999999999999


Q ss_pred             ccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCc
Q 047977          490 QFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT  564 (569)
Q Consensus       490 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  564 (569)
                      .+++..+  ...+++|++|++++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.
T Consensus       180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          180 FIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             ccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            9986633  4469999999999999985 45569999999999999999996 6778999999999999999998

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.4e-22  Score=188.77  Aligned_cols=203  Identities=19%  Similarity=0.231  Sum_probs=126.1

Q ss_pred             CCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcc
Q 047977          360 LLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFS  439 (569)
Q Consensus       360 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~  439 (569)
                      .+.++++++.++ .++..+.  +.++.|++++|.+.+..+..+..+++|+.|++++|.++...+..+..++ +|++|+++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK-NLETLWVT   93 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCT-TCCEEECC
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCC-CCCEEECC
Confidence            445555555544 2222221  3455555555555533333455555666666665555533333333443 66666666


Q ss_pred             cCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccC
Q 047977          440 NNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEI  519 (569)
Q Consensus       440 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  519 (569)
                      +|.+.+..+..+..+++|++|++++|.++...+..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+..
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            66665444444556677777777777776555556677777777777777777666666777777777777777777655


Q ss_pred             CcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCccc
Q 047977          520 SPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGK  566 (569)
Q Consensus       520 ~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  566 (569)
                      +..|..+++|+.|++++|.+++..+..+..+++|++|++++||+...
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            55677777777777777777766666677777777777777777543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=3.2e-22  Score=187.21  Aligned_cols=223  Identities=19%  Similarity=0.165  Sum_probs=175.0

Q ss_pred             EEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCc
Q 047977          290 SLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNN  369 (569)
Q Consensus       290 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  369 (569)
                      .++..+..+. .+|..+  .+++++|++++|.+++..+..+..+++|++|++++|.+....+..|..+++|++|++++|.
T Consensus        11 ~~~c~~~~l~-~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTSCCS-SCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEEecCCCcc-ccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            3444444444 345444  3689999999999997776789999999999999999987777789999999999999999


Q ss_pred             ccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccccc-CCchhhccCCCCceEEcccCcCccccC
Q 047977          370 LSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGS-IPGDFGKFSPSLINVSFSNNSFSGELP  448 (569)
Q Consensus       370 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~  448 (569)
                      ++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++. +|..+..++ +|+.|++++|.+.+..+
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~-~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECCSSCCCEECG
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC-CCCEEECCCCCCCcCCH
Confidence            9977778899999999999999999866555788899999999999988764 477777776 88888888888876555


Q ss_pred             hhhhCCCCCc----EEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccc
Q 047977          449 YELCSGFALE----ELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIG  517 (569)
Q Consensus       449 ~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  517 (569)
                      ..+..+.+|+    +|++++|.+....+..+. ..+|++|++++|.+++..+..++.+++|++|++++|++..
T Consensus       167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             HHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            5555555555    788888887744444443 3478888888888776666667778888888888887763

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=4.3e-22  Score=186.85  Aligned_cols=203  Identities=19%  Similarity=0.208  Sum_probs=138.3

Q ss_pred             ccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCc
Q 047977          355 WNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLI  434 (569)
Q Consensus       355 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~  434 (569)
                      .+++++++++++++.++ .++..+  .+.++.|++++|.+.+..+..+..+++|+.|++++|.+++..+.  ..+ ++|+
T Consensus         7 ~~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l-~~L~   80 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTL-PVLG   80 (290)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCC-TTCC
T ss_pred             cccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCC-CcCC
Confidence            34445555555555544 222222  13555555555555544444555556666666666655533222  233 3777


Q ss_pred             eEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCc
Q 047977          435 NVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNH  514 (569)
Q Consensus       435 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  514 (569)
                      +|++++|.+. .+|..+..+++|++|++++|+++...+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            7777777776 556666777888888888888885555678888888888888888887777778888888888888888


Q ss_pred             ccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcc
Q 047977          515 FIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG  565 (569)
Q Consensus       515 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  565 (569)
                      ++...+..|..+++|+.|++++|+++ .+|..+..+++|+.|++++||+.-
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            87655556788888888888888888 567777778888888888888753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=1.6e-24  Score=213.30  Aligned_cols=241  Identities=16%  Similarity=0.218  Sum_probs=145.2

Q ss_pred             ccccCCCCCCEEEccCCccccccC----cccccCCCCCEEEcccCccc---ccCCc-------cccCCCCCCEEEccCCc
Q 047977          328 SEIGKLTSLEKLDLSGNQLSGTIP----PTLWNLTNLLSLQLFFNNLS---GTIPP-------EIGSMASLVAFDVNTNQ  393 (569)
Q Consensus       328 ~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~---~~~~~-------~~~~~~~L~~L~l~~~~  393 (569)
                      ..+..+++|++|++++|.+....+    ..+..+++|++|++++|.+.   +.++.       .+..+++|+.|++++|.
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            344444455555555554443221    22334455555555554221   11111       12455666666666666


Q ss_pred             ccc----cCCccccCCCCCCEEEccCCcccccCCchhhccC------------CCCceEEcccCcCcc-ccC---hhhhC
Q 047977          394 LHG----ELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFS------------PSLINVSFSNNSFSG-ELP---YELCS  453 (569)
Q Consensus       394 ~~~----~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~------------~~L~~L~l~~~~~~~-~~~---~~~~~  453 (569)
                      +..    .++..+..+++|+.|++++|.++...+..+....            ++|++|++++|.+.+ .++   ..+..
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            554    2444556666666666666666533322222210            377777777777752 233   35556


Q ss_pred             CCCCcEEEccCCccee-----eCCccccCCCCCcEEEccCCccc----cchhhhhcCCCCCcEEeCcCCccccc----CC
Q 047977          454 GFALEELTVNGNNFTG-----SLPACMRNCSNLNRVRFDGNQFT----GNITRAFGVHPRLDFIRLSGNHFIGE----IS  520 (569)
Q Consensus       454 ~~~L~~L~l~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~----~~  520 (569)
                      +++|++|++++|.++.     ..+..+..+++|++|+|++|.++    ..++..+..+++|++|++++|.+.+.    ++
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence            7788888888887762     22336677788888888888875    45667777888888888888887654    34


Q ss_pred             cCccc--CCCCCEEECCCCccee----cCCcCc-cCCCCCCeEeCcCCcCcccCC
Q 047977          521 PDWGE--CRNLSNLQLDRNKISG----GIPAEL-GNLTRLGVLSLDSNELTGKNS  568 (569)
Q Consensus       521 ~~l~~--~~~L~~L~l~~n~~~~----~~~~~l-~~l~~L~~L~l~~n~~~~~~~  568 (569)
                      ..+..  +++|+.|++++|.+++    .+|..+ .++++|++|++++|++++.-|
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            45533  7888888888888876    366666 557888888888888877654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=6.4e-24  Score=206.80  Aligned_cols=252  Identities=14%  Similarity=0.130  Sum_probs=150.9

Q ss_pred             EEccCCcceeeCCccccCCCCCcEEecccccccccCC----ccccCCC-CCCEEEccCCccccccCcccccC-----CCC
Q 047977          291 LQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIP----SEIGKLT-SLEKLDLSGNQLSGTIPPTLWNL-----TNL  360 (569)
Q Consensus       291 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L  360 (569)
                      ..++.+.+.+.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+.+..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4566666666555555555668888888888775554    5666777 78888888888776655555554     778


Q ss_pred             CEEEcccCcccccCCcc----ccCC-CCCCEEEccCCcccccCCcc----ccC-CCCCCEEEccCCcccccCCchh----
Q 047977          361 LSLQLFFNNLSGTIPPE----IGSM-ASLVAFDVNTNQLHGELPEN----ISR-LVNLNKFSVFTNNFSGSIPGDF----  426 (569)
Q Consensus       361 ~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~l~l~~~~~~~~~~~~~----  426 (569)
                      ++|++++|.++...+..    +..+ ++|++|++++|.+.+..+..    +.. .++|+.|++++|.++......+    
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            88888888776444332    3333 67777777777776443322    222 2577777777777664333222    


Q ss_pred             hccCCCCceEEcccCcCccccChhh----hCC-CCCcEEEccCCcceee----CCccccC-CCCCcEEEccCCccccchh
Q 047977          427 GKFSPSLINVSFSNNSFSGELPYEL----CSG-FALEELTVNGNNFTGS----LPACMRN-CSNLNRVRFDGNQFTGNIT  496 (569)
Q Consensus       427 ~~~~~~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~L~l~~~~~~~~----~~~~l~~-~~~L~~L~l~~~~~~~~~~  496 (569)
                      ...+++|++|++++|.+++..+..+    ..+ ++|++|++++|.+++.    ++..+.. .++|++|++++|.+.+..+
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            2333367777777777665444322    333 4677777777766631    2333333 3467777777776655333


Q ss_pred             ----hhhcCCCCCcEEeCcCCccccc-------CCcCcccCCCCCEEECCCCcceec
Q 047977          497 ----RAFGVHPRLDFIRLSGNHFIGE-------ISPDWGECRNLSNLQLDRNKISGG  542 (569)
Q Consensus       497 ----~~l~~l~~L~~L~l~~~~~~~~-------~~~~l~~~~~L~~L~l~~n~~~~~  542 (569)
                          ..+..+++|++|++++|.+...       ++..+..+++|+.|++++|.+...
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence                2345566677777777663222       223455666666666766666644

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.9e-22  Score=188.04  Aligned_cols=228  Identities=18%  Similarity=0.214  Sum_probs=162.7

Q ss_pred             CCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEcc
Q 047977          311 KLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVN  390 (569)
Q Consensus       311 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  390 (569)
                      .+..+.+.++.+.+.  ..+..+++|+.|++++|.+...  ..+..+++|++|++++|.+...  ..+..+++|++|+++
T Consensus        20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred             HHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence            444555555555433  2345677888888888887633  3577788888888888887642  467778888888888


Q ss_pred             CCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceee
Q 047977          391 TNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGS  470 (569)
Q Consensus       391 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  470 (569)
                      +|.+.+..+..+..+++|+.|++++|.+++..+..+..++ +|++|++++|.+.+..+..+..+++|+.|++++|++++.
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  172 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT-NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL  172 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC-CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence            8888755555677788888888888887765555566665 788888888877755555566777788888888877755


Q ss_pred             CCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCC
Q 047977          471 LPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNL  550 (569)
Q Consensus       471 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l  550 (569)
                      .+..+.++++|++|++++|.+.+..+..++.+++|++|++++|++..       .+++|+.++++.|.+++.+|..++.+
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccccc
Confidence            55556777778888888887777666667777788888887777652       35567777777777777777777665


Q ss_pred             CC
Q 047977          551 TR  552 (569)
Q Consensus       551 ~~  552 (569)
                      +.
T Consensus       246 ~~  247 (272)
T 3rfs_A          246 AP  247 (272)
T ss_dssp             CG
T ss_pred             CC
Confidence            54

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=1.2e-22  Score=189.34  Aligned_cols=211  Identities=19%  Similarity=0.223  Sum_probs=140.3

Q ss_pred             ccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCC
Q 047977          306 IGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLV  385 (569)
Q Consensus       306 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  385 (569)
                      ...+++|+.|++++|.+.. + ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            3456677777777776653 2 3466677777777777776642  3566777777777777777655555566777777


Q ss_pred             EEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCC
Q 047977          386 AFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGN  465 (569)
Q Consensus       386 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  465 (569)
                      +|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..++ +|+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT-NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-cCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence            777777777655555566777777777777777655554455554 7777777777776554445566777777777777


Q ss_pred             cceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCC
Q 047977          466 NFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRN  528 (569)
Q Consensus       466 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~  528 (569)
                      .+++..+..+..+++|++|++++|++.       +.+++|+.++++.|.+.+.+|..++.++.
T Consensus       192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          192 QLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             cCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            777555555677777777777777665       23556777777777777777766655443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=4.1e-21  Score=178.82  Aligned_cols=201  Identities=27%  Similarity=0.333  Sum_probs=125.2

Q ss_pred             CCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcc
Q 047977           21 NLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLC  100 (569)
Q Consensus        21 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  100 (569)
                      +.++++++++.++ .+|..+.  +++++|++++|.+....+..|.++++|++|++++|.+..+....|..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            4667777777776 4454444  567777777777765555567777777777777777776666666667777777777


Q ss_pred             cccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccC
Q 047977          101 YNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP  180 (569)
Q Consensus       101 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  180 (569)
                      +|.+....+..+..+++|++|++++|.++ .++...|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+...
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            77766544555566667777777766665 33434456666666666666666644444456666666666666666554


Q ss_pred             CCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCC
Q 047977          181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL  225 (569)
Q Consensus       181 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  225 (569)
                      .+..+..+++|+.|++++|.+....+..+..+++|+.|++++|++
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            444455555555555555555543333455555555555555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=2.1e-23  Score=201.62  Aligned_cols=256  Identities=14%  Similarity=0.164  Sum_probs=170.7

Q ss_pred             CCCcEEEccCCcceeeCCccccCC--CCCcEEecccccccccCCccccCCCCCCEEEccCCccccc-cCcccccCCCCCE
Q 047977          286 TELESLQIQNNSFMGNIPPEIGLL--TKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGT-IPPTLWNLTNLLS  362 (569)
Q Consensus       286 ~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~  362 (569)
                      ..++.++++++.+.   +..+..+  +.++.+++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            34788888887765   2334445  7888888888888765544 55688888888888887654 5666778888888


Q ss_pred             EEcccCcccccCCccccCCCCCCEEEccCC-ccccc-CCccccCCCCCCEEEccCC-ccccc-CCchhhccCCCCceEEc
Q 047977          363 LQLFFNNLSGTIPPEIGSMASLVAFDVNTN-QLHGE-LPENISRLVNLNKFSVFTN-NFSGS-IPGDFGKFSPSLINVSF  438 (569)
Q Consensus       363 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~l~l~~~-~~~~~-~~~~~~~~~~~L~~L~l  438 (569)
                      |++++|.++...+..+..+++|++|++++| .+.+. ++..+..+++|+.|++++| .+++. ++..+..++++|++|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            888888877656666777888888888888 55542 4455667778888888887 66643 33334444337777777


Q ss_pred             ccC--cCc-cccChhhhCCCCCcEEEccCCc-ceeeCCccccCCCCCcEEEccCCc-cccchhhhhcCCCCCcEEeCcCC
Q 047977          439 SNN--SFS-GELPYELCSGFALEELTVNGNN-FTGSLPACMRNCSNLNRVRFDGNQ-FTGNITRAFGVHPRLDFIRLSGN  513 (569)
Q Consensus       439 ~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~  513 (569)
                      ++|  .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......++.+++|++|++++|
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            777  343 2345555667777777777777 554555667777777777777774 33222335667777777777777


Q ss_pred             cccccCCcCcccC-CCCCEEECCCCcceecCCcCccC
Q 047977          514 HFIGEISPDWGEC-RNLSNLQLDRNKISGGIPAELGN  549 (569)
Q Consensus       514 ~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~l~~  549 (569)
                       +..   ..+..+ .+++.|++++|.+++..|..+..
T Consensus       283 -i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          283 -VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             -SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             -cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence             321   233333 23556667777777766665543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=1.3e-22  Score=196.07  Aligned_cols=254  Identities=14%  Similarity=0.174  Sum_probs=130.3

Q ss_pred             CCEEeCcCCcCccccCccccCCC--CCCcEEEccCCcceeeCCccccCCCCCcEEeccccccccc-CCccccCCCCCCEE
Q 047977          263 LNELGLSDNFLSGEISANLIGNW--TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGP-IPSEIGKLTSLEKL  339 (569)
Q Consensus       263 L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L  339 (569)
                      ++.++++++.+..    ..+..+  +.++.++++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|
T Consensus        49 ~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           49 WQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             SSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             heeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            5556665554431    112333  5566666666655543333 33456666666666655433 44455556666666


Q ss_pred             EccCCccccccCcccccCCCCCEEEcccC-ccccc-CCccccCCCCCCEEEccCC-ccccc-CCccccCCC-CCCEEEcc
Q 047977          340 DLSGNQLSGTIPPTLWNLTNLLSLQLFFN-NLSGT-IPPEIGSMASLVAFDVNTN-QLHGE-LPENISRLV-NLNKFSVF  414 (569)
Q Consensus       340 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~l~l~  414 (569)
                      ++++|.+.+..+..+..+++|++|++++| .++.. ++..+..+++|++|++++| .+.+. ++..+..++ +|+.|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            66666655445555555666666666666 34321 2333455566666666666 55432 334455556 66666666


Q ss_pred             CC--ccc-ccCCchhhccCCCCceEEcccCc-CccccChhhhCCCCCcEEEccCCc-ceeeCCccccCCCCCcEEEccCC
Q 047977          415 TN--NFS-GSIPGDFGKFSPSLINVSFSNNS-FSGELPYELCSGFALEELTVNGNN-FTGSLPACMRNCSNLNRVRFDGN  489 (569)
Q Consensus       415 ~~--~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~  489 (569)
                      +|  .++ +.++..+..++ +|+.|++++|. +++..+..+..+++|+.|++++|. +.......+.++++|++|++++|
T Consensus       204 ~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCP-NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCT-TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCcccCCHHHHHHHHhhCC-CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            66  233 22333334443 66666666665 444445555556666666666663 22222224555666666666666


Q ss_pred             ccccchhhhhcCCCCCcEEeCcCCcccccCCcCccc
Q 047977          490 QFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGE  525 (569)
Q Consensus       490 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~  525 (569)
                       +.......+.  ..++.|++++|.+++..|..++.
T Consensus       283 -i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          283 -VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             -SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred             -cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence             3321111121  12334445666665555554443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=4.6e-21  Score=176.40  Aligned_cols=179  Identities=16%  Similarity=0.228  Sum_probs=114.4

Q ss_pred             CCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEcc
Q 047977          384 LVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVN  463 (569)
Q Consensus       384 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  463 (569)
                      .+.++++++.+. .+|..+.  +.++.|++++|.+++..+..+..++ +|++|++++|.+.+..+..+..+++|++|+++
T Consensus        16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcc-cCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            344444444444 3333332  3555555555555544444454444 66666666666655445555666677777777


Q ss_pred             CCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecC
Q 047977          464 GNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGI  543 (569)
Q Consensus       464 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  543 (569)
                      +|+++...+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+.+..+..|+.+++|+.|++++|++++..
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            77776544556677777777777777777666666677777777777777777555556777777777777777777666


Q ss_pred             CcCccCCCCCCeEeCcCCcCccc
Q 047977          544 PAELGNLTRLGVLSLDSNELTGK  566 (569)
Q Consensus       544 ~~~l~~l~~L~~L~l~~n~~~~~  566 (569)
                      +..+..+++|++|++++|++.+.
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCTT
T ss_pred             HHHHhCCCCCCEEEeeCCceeCC
Confidence            66677777777777777777654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=1.1e-20  Score=177.37  Aligned_cols=205  Identities=22%  Similarity=0.247  Sum_probs=165.0

Q ss_pred             cCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCC
Q 047977           14 PAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPS   93 (569)
Q Consensus        14 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   93 (569)
                      ..+.+++++++++++++.++ .+|..+.  +++++|++++|.+++..+..|..+++|++|++++|.+.....  ...+++
T Consensus         4 C~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~   78 (290)
T 1p9a_G            4 CEVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPV   78 (290)
T ss_dssp             SEEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTT
T ss_pred             ccccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCc
Confidence            34778899999999999998 5565554  689999999999987777889999999999999998876543  367889


Q ss_pred             CcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEcc
Q 047977           94 LTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLA  173 (569)
Q Consensus        94 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  173 (569)
                      |++|++++|.+. .+|..+..+++|++|++++|.++ .++...|.++++|++|++++|++.+..+..+..+++|+.|+++
T Consensus        79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  156 (290)
T 1p9a_G           79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (290)
T ss_dssp             CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence            999999999888 67777888889999999999887 4555556888889999998888886666667788888888888


Q ss_pred             CCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCC
Q 047977          174 TNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN  226 (569)
Q Consensus       174 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  226 (569)
                      +|.+....+..+..+++|+.|++++|.+. .+|..+...++|+.+++++|++.
T Consensus       157 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            88887666666677888888888888777 56666666777778887777654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=3.5e-22  Score=190.16  Aligned_cols=202  Identities=16%  Similarity=0.165  Sum_probs=134.2

Q ss_pred             CCCCEEEcccCcccccCCccc--cCCCCCCEEEccCCcccccCC----ccccCCCCCCEEEccCCcccccCCchhhccCC
Q 047977          358 TNLLSLQLFFNNLSGTIPPEI--GSMASLVAFDVNTNQLHGELP----ENISRLVNLNKFSVFTNNFSGSIPGDFGKFSP  431 (569)
Q Consensus       358 ~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~  431 (569)
                      ++|++|++++|.+.+..+..+  ..+++|++|++++|.+.+..+    ..+..+++|+.|++++|.+.+..+..+..++ 
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-  169 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP-  169 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT-
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC-
Confidence            445555555555544444443  445555555555555543222    1223466666666666666655555555554 


Q ss_pred             CCceEEcccCcCccc--c--ChhhhCCCCCcEEEccCCcceeeCCc----cccCCCCCcEEEccCCccccchhhhhcCC-
Q 047977          432 SLINVSFSNNSFSGE--L--PYELCSGFALEELTVNGNNFTGSLPA----CMRNCSNLNRVRFDGNQFTGNITRAFGVH-  502 (569)
Q Consensus       432 ~L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~l~~l-  502 (569)
                      +|++|++++|++.+.  +  +..+..+++|++|++++|+++ ..+.    .+.++++|++|++++|.+.+..|..++.+ 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            777777777765432  1  112346778888888888876 3332    24677889999999998887767666666 


Q ss_pred             --CCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCccc
Q 047977          503 --PRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGK  566 (569)
Q Consensus       503 --~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  566 (569)
                        ++|++|++++|.++ .+|..+.  ++|+.|++++|++++. |. +..+++|++|++++|+|+++
T Consensus       249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSCC
T ss_pred             CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCCC
Confidence              69999999999988 5677664  7899999999999853 43 67889999999999999864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=6.2e-23  Score=199.80  Aligned_cols=256  Identities=18%  Similarity=0.183  Sum_probs=185.7

Q ss_pred             EeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCC----ccccCCC-CCcEEecccccccccCCccccCC-----CC
Q 047977          266 LGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIP----PEIGLLT-KLQYLFLYRNHFSGPIPSEIGKL-----TS  335 (569)
Q Consensus       266 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~~  335 (569)
                      +.++.+.+.+.++. +....++|+.|++++|.+.+..+    .++..++ +|++|++++|.+++..+..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEE-FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHH-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHH-HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46677777754443 35555669999999999876554    5677777 89999999999887666555553     89


Q ss_pred             CCEEEccCCccccccCccc----ccC-CCCCEEEcccCcccccCCccc----cC-CCCCCEEEccCCcccccC----Ccc
Q 047977          336 LEKLDLSGNQLSGTIPPTL----WNL-TNLLSLQLFFNNLSGTIPPEI----GS-MASLVAFDVNTNQLHGEL----PEN  401 (569)
Q Consensus       336 L~~L~l~~~~~~~~~~~~~----~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~----~~~  401 (569)
                      |++|++++|.+.+..+..+    ..+ ++|++|++++|.++......+    .. +++|++|++++|.+.+..    +..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            9999999999886655543    344 899999999999875544333    33 468999999999887532    334


Q ss_pred             ccCCC-CCCEEEccCCcccccCCchhhc----cCCCCceEEcccCcCccc----cChhhhC-CCCCcEEEccCCcceeeC
Q 047977          402 ISRLV-NLNKFSVFTNNFSGSIPGDFGK----FSPSLINVSFSNNSFSGE----LPYELCS-GFALEELTVNGNNFTGSL  471 (569)
Q Consensus       402 ~~~l~-~L~~l~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~  471 (569)
                      +...+ +|+.|++++|.+++..+..+..    .+++|+.|++++|.+.+.    ++..+.. .++|++|++++|.+++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            45555 8999999999988766554433    324899999999998753    3444544 458999999999887533


Q ss_pred             C----ccccCCCCCcEEEccCCcccc-------chhhhhcCCCCCcEEeCcCCcccccCCcC
Q 047977          472 P----ACMRNCSNLNRVRFDGNQFTG-------NITRAFGVHPRLDFIRLSGNHFIGEISPD  522 (569)
Q Consensus       472 ~----~~l~~~~~L~~L~l~~~~~~~-------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  522 (569)
                      +    ..+..+++|++|++++|.+..       .++..+..+++|++||+++|++....+..
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~  303 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP  303 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence            3    345778899999999998433       23445778889999999999987654443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1e-20  Score=179.33  Aligned_cols=208  Identities=17%  Similarity=0.270  Sum_probs=157.6

Q ss_pred             EecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcc
Q 047977          315 LFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQL  394 (569)
Q Consensus       315 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  394 (569)
                      +.+..+.+.+.  .....+++|++|++++|.+... + .+..+++|++|++++|.+.... . +..+++|+.|++++|.+
T Consensus        24 ~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l   97 (308)
T 1h6u_A           24 IAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPL   97 (308)
T ss_dssp             HHTTCSSTTSE--ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCce--ecHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcC
Confidence            34444444432  2345678899999999988743 3 5888999999999999887433 3 88889999999999988


Q ss_pred             cccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCcc
Q 047977          395 HGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPAC  474 (569)
Q Consensus       395 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  474 (569)
                      .+ + ..+..+++|+.|++++|.+++. + .+..++ +|+.|++++|.+.+..+  +..+++|+.|++++|.+++ .+. 
T Consensus        98 ~~-~-~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~-~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-  168 (308)
T 1h6u_A           98 KN-V-SAIAGLQSIKTLDLTSTQITDV-T-PLAGLS-NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-  168 (308)
T ss_dssp             SC-C-GGGTTCTTCCEEECTTSCCCCC-G-GGTTCT-TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-
T ss_pred             CC-c-hhhcCCCCCCEEECCCCCCCCc-h-hhcCCC-CCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-
Confidence            74 3 3678888999999999988753 2 355555 88888888888874332  7778888888888888874 333 


Q ss_pred             ccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCccee
Q 047977          475 MRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISG  541 (569)
Q Consensus       475 l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  541 (569)
                      +..+++|++|++++|.+.+..+  +..+++|++|++++|++.+..  .+..+++|+.|++++|++++
T Consensus       169 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            7888888888888888875544  778888888888888887553  37888888888888888874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=1.7e-22  Score=198.86  Aligned_cols=241  Identities=20%  Similarity=0.207  Sum_probs=130.7

Q ss_pred             cCCCCCCcEEEccCCcceeeCC----ccccCCCCCcEEeccccccc---ccCCccc-------cCCCCCCEEEccCCccc
Q 047977          282 IGNWTELESLQIQNNSFMGNIP----PEIGLLTKLQYLFLYRNHFS---GPIPSEI-------GKLTSLEKLDLSGNQLS  347 (569)
Q Consensus       282 ~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~---~~~~~~l-------~~~~~L~~L~l~~~~~~  347 (569)
                      +..+++|+.|++++|.+....+    ..+..+++|+.|++++|.+.   +.+|..+       ..+++|++|++++|.+.
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            3445556666666665543322    22445556666666554322   2222222       34455555555555554


Q ss_pred             c----ccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCC---------CCCCEEEcc
Q 047977          348 G----TIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRL---------VNLNKFSVF  414 (569)
Q Consensus       348 ~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l---------~~L~~l~l~  414 (569)
                      .    .++..+..+++|++|++++|.++...+..+                    +..+..+         ++|+.|+++
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l--------------------~~~l~~l~~~~~~~~~~~L~~L~L~  167 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI--------------------ARALQELAVNKKAKNAPPLRSIICG  167 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH--------------------HHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHH--------------------HHHHHHHhhhhhcccCCCCcEEECC
Confidence            3    123334444555555555554432111111                    1112222         566666666


Q ss_pred             CCcccc-cCC---chhhccCCCCceEEcccCcCccc-----cChhhhCCCCCcEEEccCCcce----eeCCccccCCCCC
Q 047977          415 TNNFSG-SIP---GDFGKFSPSLINVSFSNNSFSGE-----LPYELCSGFALEELTVNGNNFT----GSLPACMRNCSNL  481 (569)
Q Consensus       415 ~~~~~~-~~~---~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L  481 (569)
                      +|.++. .++   ..+..++ +|++|++++|.+.+.     .+..+..+++|+.|++++|.++    ..++..+..+++|
T Consensus       168 ~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L  246 (386)
T 2ca6_A          168 RNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL  246 (386)
T ss_dssp             SSCCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred             CCCCCcHHHHHHHHHHHhCC-CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence            665542 222   2333444 677777777666521     2225556677777777777764    3455666777777


Q ss_pred             cEEEccCCccccc----hhhhhc--CCCCCcEEeCcCCcccc----cCCcCc-ccCCCCCEEECCCCcceecC
Q 047977          482 NRVRFDGNQFTGN----ITRAFG--VHPRLDFIRLSGNHFIG----EISPDW-GECRNLSNLQLDRNKISGGI  543 (569)
Q Consensus       482 ~~L~l~~~~~~~~----~~~~l~--~l~~L~~L~l~~~~~~~----~~~~~l-~~~~~L~~L~l~~n~~~~~~  543 (569)
                      ++|++++|.+.+.    ++..+.  .+++|++|++++|.+.+    .+|..+ ..+++|+.|++++|.+++..
T Consensus       247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            7777777777654    345553  37777777777777775    355555 55677777777777777544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=1.1e-20  Score=172.50  Aligned_cols=197  Identities=18%  Similarity=0.236  Sum_probs=128.2

Q ss_pred             CCCEEEccCCccccccCcccccCCCCCEEEcccCc-ccccCCccccCCCCCCEEEccC-CcccccCCccccCCCCCCEEE
Q 047977          335 SLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNN-LSGTIPPEIGSMASLVAFDVNT-NQLHGELPENISRLVNLNKFS  412 (569)
Q Consensus       335 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~  412 (569)
                      +|++|++++|.+....+..|..+++|++|++++|. ++...+..|..+++|+.|++++ |.+....+..+..+++|+.++
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            67777777777765555566667777777777775 5544445566666666666665 555533334455555555555


Q ss_pred             ccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCc---EEEccCC-cceeeCCccccCCCCCc-EEEcc
Q 047977          413 VFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALE---ELTVNGN-NFTGSLPACMRNCSNLN-RVRFD  487 (569)
Q Consensus       413 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~  487 (569)
                      +++|.+++                          +|. +..+++|+   +|++++| .++...+..|.++++|+ +|+++
T Consensus       112 l~~n~l~~--------------------------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~  164 (239)
T 2xwt_C          112 IFNTGLKM--------------------------FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY  164 (239)
T ss_dssp             EEEECCCS--------------------------CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred             CCCCCCcc--------------------------ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence            55554432                          332 44455555   7777777 77755556677788888 88888


Q ss_pred             CCccccchhhhhcCCCCCcEEeCcCCc-ccccCCcCcccC-CCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCc
Q 047977          488 GNQFTGNITRAFGVHPRLDFIRLSGNH-FIGEISPDWGEC-RNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNE  562 (569)
Q Consensus       488 ~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  562 (569)
                      +|.+....+..+.. ++|++|++++|+ +....+..|+.+ ++|+.|++++|++++ .|..  .+++|+.|+++++.
T Consensus       165 ~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          165 NNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             SCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred             CCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence            88887444444544 788888888884 776656667887 888888888888874 3332  56778888887763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=3.5e-20  Score=169.24  Aligned_cols=203  Identities=16%  Similarity=0.209  Sum_probs=140.5

Q ss_pred             eCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCc-cccccCcccccCCCCCEEEccc-CcccccCCccc
Q 047977          301 NIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQ-LSGTIPPTLWNLTNLLSLQLFF-NNLSGTIPPEI  378 (569)
Q Consensus       301 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~  378 (569)
                      .+|. +  .++++.|++++|.+++..+..|..+++|++|++++|. +....+..|..+++|++|++++ |.++...+..|
T Consensus        25 ~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           25 RIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             SCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred             ccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence            4555 3  4589999999999997776789999999999999997 8867777899999999999999 99987777889


Q ss_pred             cCCCCCCEEEccCCcccccCCccccCCCCCC---EEEccCC-cccccCCchhhccCCCCceEEcccCcCccccChhhhCC
Q 047977          379 GSMASLVAFDVNTNQLHGELPENISRLVNLN---KFSVFTN-NFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSG  454 (569)
Q Consensus       379 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~l~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  454 (569)
                      ..+++|+.|++++|.+.+ +|. +..+++|+   .+++++| .+++..+.                         .+..+
T Consensus       102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~-------------------------~~~~l  154 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVN-------------------------AFQGL  154 (239)
T ss_dssp             ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTT-------------------------TTTTT
T ss_pred             CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcc-------------------------cccch
Confidence            999999999999999884 554 66666665   6666665 44433333                         34444


Q ss_pred             CCCc-EEEccCCcceeeCCccccCCCCCcEEEccCCc-cccchhhhhcCC-CCCcEEeCcCCcccccCCcCcccCCCCCE
Q 047977          455 FALE-ELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQ-FTGNITRAFGVH-PRLDFIRLSGNHFIGEISPDWGECRNLSN  531 (569)
Q Consensus       455 ~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  531 (569)
                      ++|+ .|++++|+++...+..+.. ++|++|++++|+ +....+..|+.+ ++|++|++++|+++.. |..  .+++|+.
T Consensus       155 ~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~  230 (239)
T 2xwt_C          155 CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKE  230 (239)
T ss_dssp             BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSE
T ss_pred             hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCce
Confidence            5555 5555555555222223333 566666666663 555555556666 6666666666666532 322  4556666


Q ss_pred             EECCCC
Q 047977          532 LQLDRN  537 (569)
Q Consensus       532 L~l~~n  537 (569)
                      |+++++
T Consensus       231 L~l~~~  236 (239)
T 2xwt_C          231 LIARNT  236 (239)
T ss_dssp             EECTTC
T ss_pred             eeccCc
Confidence            666554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=1.1e-19  Score=172.19  Aligned_cols=193  Identities=27%  Similarity=0.357  Sum_probs=118.6

Q ss_pred             ccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCc
Q 047977           16 IGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLT   95 (569)
Q Consensus        16 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~   95 (569)
                      +.++++|++|+++++.+.. ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+...  ..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence            4466777777777777763 33 56777777777777777764433  77777777777777776654  2566777777


Q ss_pred             EEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCC
Q 047977           96 HLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATN  175 (569)
Q Consensus        96 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  175 (569)
                      +|++++|.+.+ .+ .+..+++|++|++++|.+++. +.  +..+++|++|++++|.+.+. +. +..+++|+.|++++|
T Consensus       111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDN  183 (308)
T ss_dssp             EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSS
T ss_pred             EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCC
Confidence            77777777763 33 266677777777777776632 32  46667777777777666532 22 556666666666666


Q ss_pred             ccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCC
Q 047977          176 KFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL  225 (569)
Q Consensus       176 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  225 (569)
                      .+....  .+..+++|+.|++++|.+.+..  .+..+++|++|++++|++
T Consensus       184 ~l~~~~--~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          184 KISDIS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             CCCCCG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEE
T ss_pred             ccCcCh--hhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCee
Confidence            654322  1444555555555555544322  244445555555555444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=3.4e-19  Score=163.83  Aligned_cols=180  Identities=27%  Similarity=0.346  Sum_probs=138.4

Q ss_pred             CCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEc
Q 047977           20 SNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL   99 (569)
Q Consensus        20 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l   99 (569)
                      ...++++++++.+. .+|..+.  +++++|++++|.+.+..+..+.++++|++|++++|.+....+..|..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            35677888888777 4555555  57888888888887766777788888888888888887777777788888888888


Q ss_pred             ccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCcccc
Q 047977          100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSG  179 (569)
Q Consensus       100 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  179 (569)
                      ++|.+....+..+..+++|++|++++|.++ .++...|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            888887666667778888888888888877 4555556778888888888888876655567788888888888888877


Q ss_pred             CCCcCcCCCCCCcEEEcccCccee
Q 047977          180 PIPGDIGLMSNIQLVELFNNSFTG  203 (569)
Q Consensus       180 ~~~~~l~~~~~L~~L~l~~~~~~~  203 (569)
                      ..+..+..+++|+.|++++|.+..
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             cCHHHHhCCCCCCEEEeeCCceeC
Confidence            666677788888888888887753

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.82  E-value=7.9e-20  Score=173.85  Aligned_cols=226  Identities=19%  Similarity=0.129  Sum_probs=163.8

Q ss_pred             CCCCEEeCCCCcCcccCCc---cccCCCCCcEEEccCCccccCcchhc--cCCCCCCEEECCCCCCCCCCC----ccCCC
Q 047977           20 SNLTFLDLNNNLFEGSIPS---EMGDLSELQYLSVYNNSLNGAFPFQL--SNLRKVRYLDLGGNFLETPDW----SKFSN   90 (569)
Q Consensus        20 ~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~----~~~~~   90 (569)
                      ..++.+.+.++.+......   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.....    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            4577788877766421111   11234668888888888887777776  788888888888888775432    33456


Q ss_pred             CCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccC--C-chhhhhcCCCCcEEeccCCcccccCCc----CCCC
Q 047977           91 MPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGL--I-PERLFTNLGKLEYLNLTDNQFQGKLSP----NVSK  163 (569)
Q Consensus        91 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~-~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~  163 (569)
                      +++|++|++++|.+....+..+..+++|++|++++|.+.+.  + +...+..+++|++|++++|.++.. +.    .+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhc
Confidence            88888888888888877777888888888898888876532  1 112235678888888888887521 11    2456


Q ss_pred             CCCCCEEEccCCccccCCCcCcCCC---CCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCC
Q 047977          164 LSNLTVLRLATNKFSGPIPGDIGLM---SNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS  240 (569)
Q Consensus       164 ~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  240 (569)
                      +++|++|++++|.+....+..+..+   ++|++|++++|.++ .+|..+.  ++|++|++++|++... + .+..+++|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~-~~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P-QPDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C-CTTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c-hhhhCCCcc
Confidence            7888889998888877666666655   68889999888888 5566553  7899999999988754 2 267788899


Q ss_pred             EEEccccccee
Q 047977          241 FLALAMNQLSG  251 (569)
Q Consensus       241 ~l~l~~~~~~~  251 (569)
                      .+++++|.+++
T Consensus       298 ~L~L~~N~l~~  308 (310)
T 4glp_A          298 NLTLDGNPFLV  308 (310)
T ss_dssp             CEECSSTTTSC
T ss_pred             EEECcCCCCCC
Confidence            99999888764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=1.7e-18  Score=155.34  Aligned_cols=155  Identities=16%  Similarity=0.179  Sum_probs=127.2

Q ss_pred             CEEEccCCcccccCCchhhccCCCCceEEcccCcCccccC-hhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEcc
Q 047977          409 NKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELP-YELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFD  487 (569)
Q Consensus       409 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  487 (569)
                      +.++++++.++ .+|..+   ++.++.|++++|.+.+..+ ..+..+++|+.|++++|+++...+..|.++++|++|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            46677777665 345433   2367788888888875534 346778899999999999887767788999999999999


Q ss_pred             CCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccC
Q 047977          488 GNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKN  567 (569)
Q Consensus       488 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  567 (569)
                      +|.+++..+..|+.+++|++|++++|.+.+..|..|..+++|+.|++++|.+++..|..+..+++|++|++++|++.+.-
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            99998888888999999999999999998888888999999999999999999888889999999999999999987653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=2.1e-18  Score=166.91  Aligned_cols=238  Identities=16%  Similarity=0.081  Sum_probs=115.7

Q ss_pred             EEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCC-ccccCCCCCCE-EEcc
Q 047977          265 ELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIP-SEIGKLTSLEK-LDLS  342 (569)
Q Consensus       265 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~-L~l~  342 (569)
                      .++.+++.++ ++|...   .++++.|++++|.+....+.+|.++++|++|++++|++.+.++ ..|.+++++.+ +.+.
T Consensus        13 ~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             EEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            3444444444 444321   2456666666666664444456666666666666666543322 34555665554 3344


Q ss_pred             CCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCC-cccccCCccccCCC-CCCEEEccCCcccc
Q 047977          343 GNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTN-QLHGELPENISRLV-NLNKFSVFTNNFSG  420 (569)
Q Consensus       343 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~-~L~~l~l~~~~~~~  420 (569)
                      +|.+....+..|..+++|+++++++|.+.......+.....+..+++.++ .+....+..+..+. .++.+++++|+++.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            45565555556666666666666666665444444444455555555443 33322222333332 35555555555553


Q ss_pred             cCCchhhccCCCCceEEcccCcCccccCh-hhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhh
Q 047977          421 SIPGDFGKFSPSLINVSFSNNSFSGELPY-ELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAF  499 (569)
Q Consensus       421 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l  499 (569)
                      . +....... +++.+++.++.....+|. .+..+++|+.|++++|+++ .+|.  ..+.+|+.|++.++.-...+| .+
T Consensus       169 i-~~~~f~~~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~--~~~~~L~~L~~l~~~~l~~lP-~l  242 (350)
T 4ay9_X          169 I-HNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKKLP-TL  242 (350)
T ss_dssp             E-CTTSSTTE-EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS--SSCTTCCEEECTTCTTCCCCC-CT
T ss_pred             C-Chhhcccc-chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh--hhhccchHhhhccCCCcCcCC-Cc
Confidence            2 22222222 455555554322223332 3344555555555555555 3332  123344444444433322333 24


Q ss_pred             cCCCCCcEEeCcC
Q 047977          500 GVHPRLDFIRLSG  512 (569)
Q Consensus       500 ~~l~~L~~L~l~~  512 (569)
                      ..+++|+.+++.+
T Consensus       243 ~~l~~L~~l~l~~  255 (350)
T 4ay9_X          243 EKLVALMEASLTY  255 (350)
T ss_dssp             TTCCSCCEEECSC
T ss_pred             hhCcChhhCcCCC
Confidence            4555555555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=1e-18  Score=155.74  Aligned_cols=181  Identities=21%  Similarity=0.253  Sum_probs=138.2

Q ss_pred             CEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEccc
Q 047977          361 LSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSN  440 (569)
Q Consensus       361 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  440 (569)
                      +.++++++.++ .++..+  .+++++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..++ +|++|++++
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-SLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC-CcCEEECCC
Confidence            56777777766 333332  45889999999988855555677888899999998888855555556665 888888888


Q ss_pred             CcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCC
Q 047977          441 NSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEIS  520 (569)
Q Consensus       441 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  520 (569)
                      |.+.+..+..+..+++|++|++++|+++...+..+.++++|++|++++|.+++..+..+..+++|++|++++|++.    
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----  161 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----  161 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----
Confidence            8887555555677888888888888888555556788888888888888888766767888888888888888765    


Q ss_pred             cCcccCCCCCEEECCCCcceecCCcCccCCCC
Q 047977          521 PDWGECRNLSNLQLDRNKISGGIPAELGNLTR  552 (569)
Q Consensus       521 ~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~  552 (569)
                         ..++.|+.|+++.|++++.+|..++.++.
T Consensus       162 ---~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          162 ---CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             ---CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ---cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence               34567888888888888888888777765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=3.3e-18  Score=153.41  Aligned_cols=153  Identities=17%  Similarity=0.216  Sum_probs=118.4

Q ss_pred             CEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccC
Q 047977          409 NKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDG  488 (569)
Q Consensus       409 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  488 (569)
                      +.++.+++.++ .+|..+.   +.++.|++++|.+.+..+..+..+++|+.|++++|.++...+..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            34555555555 3344332   3777888888877755555677778888888888888877778888888888888888


Q ss_pred             CccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcc
Q 047977          489 NQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG  565 (569)
Q Consensus       489 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  565 (569)
                      |.++...+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|++..
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            88887666777888888888888888887777788888888888888888887777778888888888888888754

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=2e-18  Score=153.93  Aligned_cols=189  Identities=15%  Similarity=0.178  Sum_probs=132.2

Q ss_pred             CEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCC
Q 047977          337 EKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTN  416 (569)
Q Consensus       337 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~  416 (569)
                      +.++.+++.++ .++..+  .+++++|++++|.++......+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            45666666655 233222  357888888888877555556777888888888888777544455677888888888888


Q ss_pred             cccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchh
Q 047977          417 NFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNIT  496 (569)
Q Consensus       417 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  496 (569)
                      .+++..+..+..++ +|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.    
T Consensus        87 ~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----  161 (208)
T 2o6s_A           87 QLQSLPNGVFDKLT-QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----  161 (208)
T ss_dssp             CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred             cCCccCHhHhcCcc-CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----
Confidence            87755555555665 8888888888877555555677788888888888887555555777888888888888665    


Q ss_pred             hhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcce
Q 047977          497 RAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS  540 (569)
Q Consensus       497 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  540 (569)
                         +.+++|++|+++.|.+++.+|..++.++.    ++..|...
T Consensus       162 ---~~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~  198 (208)
T 2o6s_A          162 ---CTCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGS  198 (208)
T ss_dssp             ---CCTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTT
T ss_pred             ---cCCCCHHHHHHHHHhCCceeeccCccccC----CccccccC
Confidence               34667888888888888777777776554    34444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=6.7e-18  Score=163.33  Aligned_cols=240  Identities=15%  Similarity=0.130  Sum_probs=175.0

Q ss_pred             cEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCcccccc-CcccccCCCCCE-EEcc
Q 047977          289 ESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTI-PPTLWNLTNLLS-LQLF  366 (569)
Q Consensus       289 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~-L~l~  366 (569)
                      ++++.+++.++ .+|..+  ++++++|++++|+++...+..|.++++|++|++++|.+.+.+ ...|.+++++.+ +.+.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            56777877777 566554  468999999999998665567899999999999999886544 456788888776 4556


Q ss_pred             cCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccC-CcccccCCchhhccCCCCceEEcccCcCcc
Q 047977          367 FNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFT-NNFSGSIPGDFGKFSPSLINVSFSNNSFSG  445 (569)
Q Consensus       367 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  445 (569)
                      +|+++...+..|..+++|+.+++++|.+....+..+....++..+++.+ +.+....+..+......++.|++++|++. 
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence            6888877778888999999999999988755444555666777787765 45554444556666557888888888887 


Q ss_pred             ccChhhhCCCCCcEEEccC-CcceeeCC-ccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCc
Q 047977          446 ELPYELCSGFALEELTVNG-NNFTGSLP-ACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDW  523 (569)
Q Consensus       446 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l  523 (569)
                      .++.......+|++|++.+ |.++ .+| ..|+++++|++||+++|.++...+.   .+.+|+.|.+.++.-...+| .+
T Consensus       168 ~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~~lP-~l  242 (350)
T 4ay9_X          168 EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTYNLKKLP-TL  242 (350)
T ss_dssp             EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTCTTCCCCC-CT
T ss_pred             CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhccCCCcCcCC-Cc
Confidence            5565666667888888875 5565 444 5678888888888888888854443   35566666666665444555 47


Q ss_pred             ccCCCCCEEECCCC
Q 047977          524 GECRNLSNLQLDRN  537 (569)
Q Consensus       524 ~~~~~L~~L~l~~n  537 (569)
                      ..+++|+.+++.++
T Consensus       243 ~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          243 EKLVALMEASLTYP  256 (350)
T ss_dssp             TTCCSCCEEECSCH
T ss_pred             hhCcChhhCcCCCC
Confidence            78888888888764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=3.6e-18  Score=173.48  Aligned_cols=187  Identities=26%  Similarity=0.347  Sum_probs=121.2

Q ss_pred             CCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 047977          335 SLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVF  414 (569)
Q Consensus       335 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~  414 (569)
                      +++.|++++|.+.. ++..+  +++|+.|++++|.++ .++   ..+++|+.|++++|.+.+ +|. +..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            77888888887764 44433  267888888888776 344   345777777777777774 555 433  77777777


Q ss_pred             CCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccc
Q 047977          415 TNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGN  494 (569)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  494 (569)
                      +|.+++ +|.   . .++|+.|++++|.+++ +|.   .+++|+.|++++|.+++ +|. +.  ++|+.|++++|.++ .
T Consensus       129 ~N~l~~-lp~---~-l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~  194 (571)
T 3cvr_A          129 NNQLTM-LPE---L-PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S  194 (571)
T ss_dssp             SSCCSC-CCC---C-CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred             CCcCCC-CCC---c-CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence            777765 444   2 2377777777777763 443   45677777777777763 555 44  67777777777776 3


Q ss_pred             hhhhhcCCCCC-------cEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCC
Q 047977          495 ITRAFGVHPRL-------DFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNL  550 (569)
Q Consensus       495 ~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l  550 (569)
                      +|. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|++++..|..+..+
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            443 332  55       77777777766 456666667777777777777776666665554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.76  E-value=6.1e-17  Score=159.29  Aligned_cols=335  Identities=12%  Similarity=0.021  Sum_probs=175.3

Q ss_pred             CcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCcc
Q 047977            8 ISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSK   87 (569)
Q Consensus         8 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~   87 (569)
                      ++.+...||..|++|+.+.+..+ ++.+...+|.+|++|+.+++.++ ++.....+|.++..|+.+.+..+ +..+...+
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a  135 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA  135 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence            44455556666666666666532 44455555666666666665433 33233444555555555544322 33333334


Q ss_pred             CCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCC
Q 047977           88 FSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNL  167 (569)
Q Consensus        88 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  167 (569)
                      |.++..++.......  .                         .+...+|.++++|+.+.+..+. ......+|..+.+|
T Consensus       136 F~~~~~~~~~~~~~~--~-------------------------~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L  187 (394)
T 4fs7_A          136 FKGCDFKEITIPEGV--T-------------------------VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKL  187 (394)
T ss_dssp             TTTCCCSEEECCTTC--C-------------------------EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTC
T ss_pred             eecccccccccCccc--c-------------------------ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCc
Confidence            444332221111111  1                         1222334444445544443322 11233344444555


Q ss_pred             CEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccc
Q 047977          168 TVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMN  247 (569)
Q Consensus       168 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  247 (569)
                      +.+.+..+ +.......+..+..|+.+.+......  +.........|+.+.+... +......++..+..++.+.+..+
T Consensus       188 ~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~  263 (394)
T 4fs7_A          188 KSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN  263 (394)
T ss_dssp             CBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT
T ss_pred             eEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC
Confidence            55544432 22233344445555555444433221  1122233445666665432 23344455666666666666554


Q ss_pred             cceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCC
Q 047977          248 QLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIP  327 (569)
Q Consensus       248 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  327 (569)
                      ... .....+..+..++.+......    ++...+..+.+|+.+.+.++ +......+|.++.+|+.+.+.++ ++....
T Consensus       264 ~~~-i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~  336 (394)
T 4fs7_A          264 KLR-IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK  336 (394)
T ss_dssp             TCE-ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred             cce-eeccccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhH
Confidence            332 444556666667666655432    33344667777787777654 44445566777788888887653 444555


Q ss_pred             ccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEE
Q 047977          328 SEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAF  387 (569)
Q Consensus       328 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  387 (569)
                      .+|.+|.+|+.+.+..+ +......+|.+|++|+.+++..+- . .....|.+|++|+.+
T Consensus       337 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          337 RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred             HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence            67788888888888665 555666778888888888886542 2 234567777777665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=1.2e-17  Score=150.82  Aligned_cols=155  Identities=17%  Similarity=0.156  Sum_probs=123.3

Q ss_pred             CCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEcc
Q 047977          408 LNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFD  487 (569)
Q Consensus       408 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  487 (569)
                      .+.++.+++.+. .+|..+.   ++|+.|++++|.+.+..+..+..+++|+.|++++|++....+..+.++++|+.|+++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            345666665554 3444332   488888888888877667777788889999999988875545667888999999999


Q ss_pred             CCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccC
Q 047977          488 GNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKN  567 (569)
Q Consensus       488 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  567 (569)
                      +|.+++..+..|+.+++|++|++++|.+. .+|..+..+++|+.|++++|++++..+..+..+++|++|++++|++.+.-
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            99988777777888999999999999987 67888888999999999999998777777888999999999999987653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=6.4e-18  Score=158.62  Aligned_cols=185  Identities=18%  Similarity=0.210  Sum_probs=141.2

Q ss_pred             EccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccc
Q 047977          340 DLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFS  419 (569)
Q Consensus       340 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~  419 (569)
                      .+....+.+.  ..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+. +. +..+++|+.|++++|.++
T Consensus        30 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~  103 (291)
T 1h6t_A           30 NLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVK  103 (291)
T ss_dssp             HTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC
T ss_pred             HhcCCCcccc--cchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCC
Confidence            3444444332  2345778899999999988743  3477889999999999988843 33 788899999999999887


Q ss_pred             ccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhh
Q 047977          420 GSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAF  499 (569)
Q Consensus       420 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l  499 (569)
                      +.  ..+..++ +|+.|++++|.+.+.  ..+..+++|+.|++++|++++.  ..+..+++|++|++++|.+.+..+  +
T Consensus       104 ~~--~~l~~l~-~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l  174 (291)
T 1h6t_A          104 DL--SSLKDLK-KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L  174 (291)
T ss_dssp             CG--GGGTTCT-TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             CC--hhhccCC-CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence            52  2355555 888899988888743  4577788888888888888743  567888888888888888886555  7


Q ss_pred             cCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCccee
Q 047977          500 GVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISG  541 (569)
Q Consensus       500 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  541 (569)
                      ..+++|++|++++|.+.+.  ..+..+++|+.|++++|+++.
T Consensus       175 ~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          175 AGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             TTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred             cCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccC
Confidence            8888888888888888754  347888888888888888875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=6.9e-18  Score=148.76  Aligned_cols=154  Identities=14%  Similarity=0.191  Sum_probs=120.4

Q ss_pred             cCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCc
Q 047977          403 SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLN  482 (569)
Q Consensus       403 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  482 (569)
                      ..+++|+.+++++|.++ .++ .+..++ +|++|++++|.+.  .+..+..+++|++|++++|++++..+..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~-~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAH-NIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCT-TCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCC-CCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            34556666666666665 333 344554 7778888877654  234677788999999999999876788899999999


Q ss_pred             EEEccCCccccchhhhhcCCCCCcEEeCcCCc-ccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCC
Q 047977          483 RVRFDGNQFTGNITRAFGVHPRLDFIRLSGNH-FIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSN  561 (569)
Q Consensus       483 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  561 (569)
                      +|++++|.+.+..+..++.+++|++|++++|. +. .++ .+..+++|+.|++++|.+++. + .+..+++|++|++++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCc
Confidence            99999999998788889999999999999998 55 444 689999999999999999863 3 7899999999999999


Q ss_pred             cCcc
Q 047977          562 ELTG  565 (569)
Q Consensus       562 ~~~~  565 (569)
                      ++.+
T Consensus       192 ~i~~  195 (197)
T 4ezg_A          192 TIGG  195 (197)
T ss_dssp             ----
T ss_pred             ccCC
Confidence            9865

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.75  E-value=1e-16  Score=157.71  Aligned_cols=335  Identities=12%  Similarity=0.022  Sum_probs=238.4

Q ss_pred             cccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchh
Q 047977           56 LNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPER  135 (569)
Q Consensus        56 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  135 (569)
                      ++.+-..+|.++.+|+.+.+.. .+..+...+|.++.+|+.+++.++ +......++..+++|+.+.+..+ +. .+...
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~  134 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVE  134 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecce
Confidence            3334445677777777777753 356666667777777777777654 33344556677777777666544 22 34445


Q ss_pred             hhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCC
Q 047977          136 LFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNL  215 (569)
Q Consensus       136 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L  215 (569)
                      .|.++...+.......  ......+|..+++|+.+.+..+. .......|..+.+|+.+.+..+ +......++..+..|
T Consensus       135 aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L  210 (394)
T 4fs7_A          135 AFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL  210 (394)
T ss_dssp             TTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred             eeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence            5677655444433332  22445678999999999998653 4466678899999999999776 444556778889999


Q ss_pred             CEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccC
Q 047977          216 QHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQN  295 (569)
Q Consensus       216 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  295 (569)
                      +.+.+..+... . ........+|+.+.+... .+.....++..+..++.+.+..+..  .+....+..++.++.+....
T Consensus       211 ~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~  285 (394)
T 4fs7_A          211 ENMEFPNSLYY-L-GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGS  285 (394)
T ss_dssp             CBCCCCTTCCE-E-CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECS
T ss_pred             ceeecCCCceE-e-ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCc
Confidence            99988765432 2 223345578898888654 3445566788899999999977643  45556688899999998876


Q ss_pred             CcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCC
Q 047977          296 NSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIP  375 (569)
Q Consensus       296 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  375 (569)
                      ..+   ....+..+.+|+.+.+.++ ++.....+|.+|.+|+.+++..+ +......+|.+|.+|+.+.+..+ ++....
T Consensus       286 ~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~  359 (394)
T 4fs7_A          286 VIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGA  359 (394)
T ss_dssp             SEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred             eee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehH
Confidence            543   3356788999999999765 55456678999999999999754 66677789999999999999876 665777


Q ss_pred             ccccCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 047977          376 PEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKF  411 (569)
Q Consensus       376 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l  411 (569)
                      .+|.+|++|+.+++..+- . .+..++.++++|+.+
T Consensus       360 ~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          360 NAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred             HHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence            899999999999997652 2 234578888888765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=7.5e-18  Score=163.61  Aligned_cols=157  Identities=18%  Similarity=0.074  Sum_probs=99.8

Q ss_pred             CCCEEEccCCcccccCCchhh-ccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEE
Q 047977          407 NLNKFSVFTNNFSGSIPGDFG-KFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVR  485 (569)
Q Consensus       407 ~L~~l~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  485 (569)
                      .++.|++++|.+++..+..+. .+. +|+.|++++|.+.+..+..+..+++|++|++++|++....+..|.++++|++|+
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLT-NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCCCCccChhhhhhccc-ccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            345555555555544443343 333 666666666666544445566667777777777777655555677777777777


Q ss_pred             ccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCc---ccCCCCCEEECCCCcceecCCcCccCCCC--CCeEeCcC
Q 047977          486 FDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDW---GECRNLSNLQLDRNKISGGIPAELGNLTR--LGVLSLDS  560 (569)
Q Consensus       486 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~  560 (569)
                      |++|.+....+..|..+++|++|++++|.+....+..|   ..+++|+.|++++|.+++..+..+..++.  ++.|++++
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence            77777776667777777777777777777764333334   55777777777777777655555666665  37777777


Q ss_pred             CcCc
Q 047977          561 NELT  564 (569)
Q Consensus       561 n~~~  564 (569)
                      ||+.
T Consensus       199 N~~~  202 (361)
T 2xot_A          199 NPLE  202 (361)
T ss_dssp             SCEE
T ss_pred             CCcc
Confidence            7765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=1.4e-17  Score=156.26  Aligned_cols=190  Identities=17%  Similarity=0.239  Sum_probs=155.5

Q ss_pred             CcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccC
Q 047977          312 LQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNT  391 (569)
Q Consensus       312 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  391 (569)
                      +..+.+....+.+.  ..+..+++|++|++++|.+...  ..+..+++|++|++++|.++...+  +..+++|+.|++++
T Consensus        26 ~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           26 TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE   99 (291)
T ss_dssp             HHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCcccc--cchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence            34445555555433  2345688999999999998754  358889999999999999985433  88999999999999


Q ss_pred             CcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeC
Q 047977          392 NQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSL  471 (569)
Q Consensus       392 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  471 (569)
                      |.+.+ + ..+..+++|+.|++++|.+++.  ..+..++ +|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..
T Consensus       100 n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~  172 (291)
T 1h6t_A          100 NKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV  172 (291)
T ss_dssp             SCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred             CcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCC-CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence            99874 3 3588999999999999999864  4566666 999999999999754  57888999999999999998543


Q ss_pred             CccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCccccc
Q 047977          472 PACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGE  518 (569)
Q Consensus       472 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  518 (569)
                      +  +..+++|++|++++|.+++. + .+..+++|+.|++++|++...
T Consensus       173 ~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          173 P--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             G--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred             h--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence            3  89999999999999999864 3 489999999999999998753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=5.6e-17  Score=145.33  Aligned_cols=151  Identities=18%  Similarity=0.222  Sum_probs=84.5

Q ss_pred             CEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEccc
Q 047977          361 LSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSN  440 (569)
Q Consensus       361 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  440 (569)
                      +.++++++.++ .++..+.  +.++.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..++ +|++|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCC
Confidence            45666666665 3333322  4666677766666644444566666666666666666655555555554 566666666


Q ss_pred             CcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcc
Q 047977          441 NSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHF  515 (569)
Q Consensus       441 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  515 (569)
                      |.+....+..+..+++|+.|++++|++....+..|.++++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            655532222334455555555555555544445555555555555555555555555555555555555555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=4e-17  Score=156.45  Aligned_cols=218  Identities=14%  Similarity=0.051  Sum_probs=146.4

Q ss_pred             CCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcc----cccCCccccCCCCC
Q 047977          333 LTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQL----HGELPENISRLVNL  408 (569)
Q Consensus       333 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~~~~l~~L  408 (569)
                      |++|+++++.+ .+..+...+|..|++|+++++.+|.+.......|.++..+..+.......    .......+..+..+
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            66666666666 55545555666666666666666665555555565555555554443211    11112234445555


Q ss_pred             C-EEEccCCcccccCCchhhc---cCCCCceEEcccCcCccccChhh-hCCCCCcEEEccCCcceeeCCccccCCCCCcE
Q 047977          409 N-KFSVFTNNFSGSIPGDFGK---FSPSLINVSFSNNSFSGELPYEL-CSGFALEELTVNGNNFTGSLPACMRNCSNLNR  483 (569)
Q Consensus       409 ~-~l~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  483 (569)
                      + .+.+....   .++..+..   .+.++..+.+.+.-.. .....+ ..+++|+++++++|+++......|.+|++|++
T Consensus       179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK  254 (329)
T ss_dssp             EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred             ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence            5 33333221   11111111   1235666666655322 111222 23789999999999998777788999999999


Q ss_pred             EEccCCccccchhhhhcCCCCCc-EEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEe
Q 047977          484 VRFDGNQFTGNITRAFGVHPRLD-FIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLS  557 (569)
Q Consensus       484 L~l~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  557 (569)
                      +++.+| +......+|.++++|+ .+++.+ .++...+.+|.+|++|+.|++++|+++.+.+.+|.++++|+.+.
T Consensus       255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            999988 7777788999999999 999988 77767778899999999999999999999999999999999885

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=6e-17  Score=166.56  Aligned_cols=191  Identities=17%  Similarity=0.255  Sum_probs=128.8

Q ss_pred             CCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEcc
Q 047977          311 KLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVN  390 (569)
Q Consensus       311 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  390 (569)
                      .+..+.+..+.+....  .+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+....+  +..+++|+.|+++
T Consensus        22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence            3445555555555332  345677888888888887643  257788888888888888774332  7778888888888


Q ss_pred             CCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceee
Q 047977          391 TNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGS  470 (569)
Q Consensus       391 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  470 (569)
                      +|.+.+ ++ .+..+++|+.|++++|.+.+.  ..+..++ +|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+.
T Consensus        96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~-~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A           96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             SSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCT-TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred             CCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCC-ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence            887763 33 567777777787777777642  3455554 777777777777643  4566677777777777777643


Q ss_pred             CCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCccccc
Q 047977          471 LPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGE  518 (569)
Q Consensus       471 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  518 (569)
                      .+  +..+++|+.|+|++|.+.+.  ..+..+++|+.|++++|++...
T Consensus       169 ~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          169 VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            33  66777777777777777643  2466777777777777776643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.72  E-value=3.8e-17  Score=166.03  Aligned_cols=189  Identities=28%  Similarity=0.300  Sum_probs=149.3

Q ss_pred             CCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEcc
Q 047977          311 KLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVN  390 (569)
Q Consensus       311 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  390 (569)
                      +++.|++++|.+++ +|..+  .++|++|++++|.+. .++   ..+++|++|++++|.++. ++. +..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            89999999999885 55544  378999999999988 444   457899999999999885 554 444  89999999


Q ss_pred             CCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceee
Q 047977          391 TNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGS  470 (569)
Q Consensus       391 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  470 (569)
                      +|.+.+ +|.   .+++|+.|++++|.+++ +|.    ..++|+.|++++|.+++ +|. +.  ++|+.|++++|+++ .
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~  194 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S  194 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence            999885 665   67899999999999885 554    33599999999999875 665 44  89999999999988 6


Q ss_pred             CCccccCCCCC-------cEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCC
Q 047977          471 LPACMRNCSNL-------NRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRN  528 (569)
Q Consensus       471 ~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~  528 (569)
                      +|. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|++++..|..+..+++
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            666 554  67       99999999998 46777777999999999999998887777666443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=5.5e-17  Score=166.80  Aligned_cols=192  Identities=18%  Similarity=0.215  Sum_probs=155.8

Q ss_pred             CCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccC
Q 047977          336 LEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFT  415 (569)
Q Consensus       336 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~  415 (569)
                      +..+.+..+.+.+..  .+..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+  +..+++|+.|++++
T Consensus        23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            334455555555332  356789999999999998743 3 58889999999999999985433  88899999999999


Q ss_pred             CcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccch
Q 047977          416 NNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNI  495 (569)
Q Consensus       416 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  495 (569)
                      |.+.+.  ..+..++ +|+.|++++|.+.+ + ..+..+++|+.|++++|.+++.  ..+..+++|+.|+|++|.+.+..
T Consensus        97 N~l~~l--~~l~~l~-~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~  169 (605)
T 1m9s_A           97 NKIKDL--SSLKDLK-KLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV  169 (605)
T ss_dssp             SCCCCC--TTSTTCT-TCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred             CCCCCC--hhhccCC-CCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence            998753  3566665 99999999999875 3 4688899999999999999843  67889999999999999998766


Q ss_pred             hhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCC
Q 047977          496 TRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIP  544 (569)
Q Consensus       496 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~  544 (569)
                      +  +..+++|++|++++|.+.+.  ..+..+++|+.|++++|+++....
T Consensus       170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred             h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence            6  88999999999999998854  568999999999999999886433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=1.1e-16  Score=143.41  Aligned_cols=152  Identities=18%  Similarity=0.168  Sum_probs=83.2

Q ss_pred             CEEEcccCcccccCCccccCCCCCCEEEccCCcccccCC-ccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcc
Q 047977          361 LSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP-ENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFS  439 (569)
Q Consensus       361 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~  439 (569)
                      +.++++++.++ .++..+  .+.++.|++++|.+.+..+ ..+..+++|+.|++++|.+++..+..+..++ +|++|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECC
T ss_pred             CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECC
Confidence            36666666665 233332  2345666666666664422 2355566666666666666554444455444 55555555


Q ss_pred             cCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCccc
Q 047977          440 NNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFI  516 (569)
Q Consensus       440 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  516 (569)
                      +|.+.+..+..+..+++|++|++++|++.+..+..+.++++|++|++++|.+++..|..|..+++|++|++++|++.
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            55555444444555555555555555555444555555555555555555555555555555555555555555543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.71  E-value=8.8e-16  Score=149.99  Aligned_cols=268  Identities=13%  Similarity=0.132  Sum_probs=199.5

Q ss_pred             cCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcE
Q 047977           17 GTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTH   96 (569)
Q Consensus        17 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   96 (569)
                      .-+..++.+.+.+. ++.+...+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+..+...+|.+|++|+.
T Consensus       110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence            34477788887764 555677778776 6888888765 555566677775 688888875 567777778888888888


Q ss_pred             EEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCc
Q 047977           97 LSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNK  176 (569)
Q Consensus        97 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  176 (569)
                      +++.++.+......+|. +.+|+.+.+..+ ++ .++..+|.++++|+.+.+..+ +......+|.. .+|+.+.+.. .
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~  258 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-G  258 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-T
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-C
Confidence            88888877755555555 578888888754 44 566777888888888888764 45455566666 6788888854 4


Q ss_pred             cccCCCcCcCCCCCCcEEEcccCcce-----ecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEccccccee
Q 047977          177 FSGPIPGDIGLMSNIQLVELFNNSFT-----GQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSG  251 (569)
Q Consensus       177 ~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  251 (569)
                      +.......|..|++|+.+.+.++...     ..-..+|..|++|+.+.+.+ .+..+...+|.+|++|+.+.+..+ ++.
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~  336 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ  336 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred             ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence            55566778888888998888876654     35567788899999999984 577777888999999999999654 666


Q ss_pred             ccCccCcCCCCCCEEeCcCCcCccccCccccCCCC-CCcEEEccCCcce
Q 047977          252 GLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWT-ELESLQIQNNSFM  299 (569)
Q Consensus       252 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~  299 (569)
                      ....+|.++ +|+.+.+.++... .+....+.+++ .++.+++..+.+.
T Consensus       337 I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          337 INFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             ECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             EcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHHHHH
Confidence            777888888 9999999988776 45555577775 6889988876543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=1.3e-16  Score=139.75  Aligned_cols=132  Identities=22%  Similarity=0.272  Sum_probs=108.3

Q ss_pred             ceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCc-cccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcC
Q 047977          434 INVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPA-CMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSG  512 (569)
Q Consensus       434 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  512 (569)
                      +.++++++.+. .+|..+..  ++++|++++|.+....+. .+..+++|++|++++|.+++..|..|+.+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            66777777775 56654433  788888888888754443 478888999999999999888888888999999999999


Q ss_pred             CcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccCC
Q 047977          513 NHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKNS  568 (569)
Q Consensus       513 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  568 (569)
                      |.+.+..+..|+.+++|+.|++++|++++..|..+..+++|++|++++|++.+..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99887777778889999999999999998888888899999999999999887643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=3.1e-16  Score=141.50  Aligned_cols=152  Identities=26%  Similarity=0.282  Sum_probs=109.4

Q ss_pred             CCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEccc
Q 047977           22 LTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCY  101 (569)
Q Consensus        22 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  101 (569)
                      -+.++.+++.+. .+|..+.  ++|++|++++|.+.+..+..|..+++|++|++++|.+..+....|..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            456777777666 4454443  6777777777777766677777777777777777777776666677777777777777


Q ss_pred             ccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccc
Q 047977          102 NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFS  178 (569)
Q Consensus       102 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  178 (569)
                      |.+....+..+..+++|++|++++|.++ .+|..+ ..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTG-GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCccc-ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            7777555556677777888888777776 555554 67777888888887777555556777778888888877664

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=9.6e-17  Score=141.41  Aligned_cols=150  Identities=13%  Similarity=0.142  Sum_probs=86.2

Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEE
Q 047977          382 ASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELT  461 (569)
Q Consensus       382 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  461 (569)
                      ++|+.+++++|.+. .++ .+..+++|+.|++++|.++  .+..+..++ +|++|++++|.+.+..+..+..+++|++|+
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCC-CCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            33444444444443 222 3444444444444444332  112333333 666666666666554555566666777777


Q ss_pred             ccCCcceeeCCccccCCCCCcEEEccCCc-cccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcce
Q 047977          462 VNGNNFTGSLPACMRNCSNLNRVRFDGNQ-FTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS  540 (569)
Q Consensus       462 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  540 (569)
                      +++|.+++..+..+..+++|++|++++|. +.. ++ .++.+++|++|++++|.+.+. + .+..+++|+.|++++|++.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence            77777765556666777777777777776 443 33 467777777777777777643 2 6777777777777777765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=1.9e-16  Score=153.71  Aligned_cols=176  Identities=18%  Similarity=0.109  Sum_probs=98.6

Q ss_pred             CEEEccCCccccccCcccccCCCCCEEEcccCcccccCCcccc-CCCCCCEEEccCCcccccCCccccCCCCCCEEEccC
Q 047977          337 EKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIG-SMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFT  415 (569)
Q Consensus       337 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~  415 (569)
                      +.++++++.+. .+|..+.  +.++.|++++|.++......+. .+++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            45666666665 3333332  3466677777766655555555 666666666666666654445566666666666666


Q ss_pred             CcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccc---cCCCCCcEEEccCCccc
Q 047977          416 NNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACM---RNCSNLNRVRFDGNQFT  492 (569)
Q Consensus       416 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~  492 (569)
                      |.++...+..+..+. +|+.|++++|.+.+..+..+..+++|+.|++++|.++...+..+   ..+++|+.|+|++|.+.
T Consensus        98 N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQ-ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCc-CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            666544444444444 66666666666654445555555666666666666552222222   34556666666666665


Q ss_pred             cchhhhhcCCCC--CcEEeCcCCccc
Q 047977          493 GNITRAFGVHPR--LDFIRLSGNHFI  516 (569)
Q Consensus       493 ~~~~~~l~~l~~--L~~L~l~~~~~~  516 (569)
                      ...+..+..++.  ++.|++++|++.
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ccCHHHhhhccHhhcceEEecCCCcc
Confidence            544455555554  255666665543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=8.9e-17  Score=148.29  Aligned_cols=171  Identities=16%  Similarity=0.280  Sum_probs=118.8

Q ss_pred             cCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCce
Q 047977          356 NLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLIN  435 (569)
Q Consensus       356 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~  435 (569)
                      .+.++..++++++.+++..  .+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+++..+  +..++ +|+.
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~-~L~~   89 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLT-KLEE   89 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCS-SCCE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCC-CCCE
Confidence            3455666677777766332  4667788888888888776 444 57778888888888887775433  55555 7888


Q ss_pred             EEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcc
Q 047977          436 VSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHF  515 (569)
Q Consensus       436 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  515 (569)
                      |++++|++.+ ++. +.. ++|+.|++++|++++ . ..+..+++|++|++++|.+++. + .++.+++|++|++++|++
T Consensus        90 L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A           90 LSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             EECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred             EECCCCccCC-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence            8888887764 332 222 677888888887773 3 3477777788888888777754 2 567777888888888877


Q ss_pred             cccCCcCcccCCCCCEEECCCCcceec
Q 047977          516 IGEISPDWGECRNLSNLQLDRNKISGG  542 (569)
Q Consensus       516 ~~~~~~~l~~~~~L~~L~l~~n~~~~~  542 (569)
                      .+.  ..+..+++|+.|++++|.++..
T Consensus       163 ~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          163 TNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cch--HHhccCCCCCEEeCCCCcccCC
Confidence            655  5677777788888877777743

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.68  E-value=5.7e-15  Score=144.27  Aligned_cols=268  Identities=16%  Similarity=0.119  Sum_probs=217.7

Q ss_pred             ccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCC
Q 047977           40 MGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT  119 (569)
Q Consensus        40 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  119 (569)
                      +..+..++.+.+.+. ++.....+|.++ +|+.+++..+ +..+...+|.++ +|+.+.+.+ .+......+|..|++|+
T Consensus       109 ~~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          109 TEILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK  183 (401)
T ss_dssp             EEECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred             EEecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence            445688999999864 665667788886 8999999866 777888889884 799999987 56656678899999999


Q ss_pred             EEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccC
Q 047977          120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNN  199 (569)
Q Consensus       120 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  199 (569)
                      .+++..+.++ .++...|. +.+|+.+.+..+ +......+|..+++|+.+.+..+ +..+....|.. .+|+.+.+. +
T Consensus       184 ~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~  257 (401)
T 4fdw_A          184 KADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-N  257 (401)
T ss_dssp             EEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-T
T ss_pred             eeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-C
Confidence            9999999887 67777777 589999999854 66677788999999999999874 55566677777 789999994 4


Q ss_pred             cceecCCccccCCCCCCEEEcccCCCC-----cCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCc
Q 047977          200 SFTGQIPSSLGQLKNLQHLDLRMNALN-----STIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLS  274 (569)
Q Consensus       200 ~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  274 (569)
                      .+...-..+|..|++|+.+.+.++...     .....+|..|++|+.+.+.. .++.....+|.++++|+.+.+..+ +.
T Consensus       258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~  335 (401)
T 4fdw_A          258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT  335 (401)
T ss_dssp             TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred             CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc
Confidence            455566788999999999999887664     46678899999999999984 577777888999999999999665 43


Q ss_pred             cccCccccCCCCCCcEEEccCCcceeeCCccccCCC-CCcEEecccccc
Q 047977          275 GEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLT-KLQYLFLYRNHF  322 (569)
Q Consensus       275 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~  322 (569)
                       .+...+|.++ +|+.+++.++.........|..++ .++.+++..+.+
T Consensus       336 -~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          336 -QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             -EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             -EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence             6677779999 999999999987765566677774 788999987654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=5.6e-16  Score=142.95  Aligned_cols=160  Identities=23%  Similarity=0.332  Sum_probs=84.8

Q ss_pred             CCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCC
Q 047977            3 LSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLET   82 (569)
Q Consensus         3 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~   82 (569)
                      ++++.+.++.  .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+..
T Consensus        26 l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~   99 (263)
T 1xeu_A           26 LGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN   99 (263)
T ss_dssp             HTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC
T ss_pred             hcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC
Confidence            4455555433  35566666666666666552 23 45556666666666666653332  5566666666666665554


Q ss_pred             CCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCC
Q 047977           83 PDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVS  162 (569)
Q Consensus        83 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  162 (569)
                      ...  +.. ++|++|++++|.+.+ . ..+..+++|++|++++|.+++. +  .+..+++|++|++++|.+.+.  ..+.
T Consensus       100 l~~--~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~--~l~~l~~L~~L~L~~N~i~~~--~~l~  169 (263)
T 1xeu_A          100 LNG--IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V--MLGFLSKLEVLDLHGNEITNT--GGLT  169 (263)
T ss_dssp             CTT--CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G--GGGGCTTCCEEECTTSCCCBC--TTST
T ss_pred             cCc--ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h--HHccCCCCCEEECCCCcCcch--HHhc
Confidence            332  222 556666666665552 2 2355555555555555555532 2  235555555555555555433  3444


Q ss_pred             CCCCCCEEEccCCccc
Q 047977          163 KLSNLTVLRLATNKFS  178 (569)
Q Consensus       163 ~~~~L~~L~l~~~~~~  178 (569)
                      .+++|+.|++++|.+.
T Consensus       170 ~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          170 RLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             TCCCCCEEEEEEEEEE
T ss_pred             cCCCCCEEeCCCCccc
Confidence            5555555555555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=5.6e-16  Score=148.48  Aligned_cols=103  Identities=12%  Similarity=0.048  Sum_probs=84.3

Q ss_pred             CCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCC-EEEcccCCCCcCCCcCCcCCCCCCEE
Q 047977          164 LSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQ-HLDLRMNALNSTIPPELGLCTNLSFL  242 (569)
Q Consensus       164 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~l  242 (569)
                      +++|+.++++++.+..+....|..|.+|+.+++..+ +..+-+.+|..+++|+ .+++.+ .+..+...+|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            678888888888887777778888888888888886 6656667788888888 888887 6777777888888888888


Q ss_pred             EcccccceeccCccCcCCCCCCEEeC
Q 047977          243 ALAMNQLSGGLPLSLSNLSRLNELGL  268 (569)
Q Consensus       243 ~l~~~~~~~~~~~~l~~~~~L~~L~l  268 (569)
                      ++..+.++.....+|.++++|+.++.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            88888888777788888888888764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=2e-19  Score=183.90  Aligned_cols=209  Identities=14%  Similarity=0.091  Sum_probs=134.7

Q ss_pred             cCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 047977          331 GKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNK  410 (569)
Q Consensus       331 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  410 (569)
                      ..++.|+.|++++|.+. .+|..++.+++|++|++++|......+...           ..+...+..|..+..+++|+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhccc
Confidence            45677888888888776 567777778888888776553110000000           001122233334444455555


Q ss_pred             EE-ccCCcccccC--------CchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCC
Q 047977          411 FS-VFTNNFSGSI--------PGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNL  481 (569)
Q Consensus       411 l~-l~~~~~~~~~--------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  481 (569)
                      ++ ++.+.+....        ...+..  ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+.++++|
T Consensus       414 L~~l~~n~~~~L~~l~l~~n~i~~l~~--~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L  488 (567)
T 1dce_A          414 VDPMRAAYLDDLRSKFLLENSVLKMEY--ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCL  488 (567)
T ss_dssp             HCGGGHHHHHHHHHHHHHHHHHHHHHH--TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred             CcchhhcccchhhhhhhhcccccccCc--cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCC
Confidence            44 3332221000        001111  267888888888874 564 777888888888888888 778888888888


Q ss_pred             cEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccC-CcCcccCCCCCEEECCCCcceecCCcC---ccCCCCCCeEe
Q 047977          482 NRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEI-SPDWGECRNLSNLQLDRNKISGGIPAE---LGNLTRLGVLS  557 (569)
Q Consensus       482 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~~---l~~l~~L~~L~  557 (569)
                      +.|++++|.+++ +| .++.+++|++|++++|.+++.. |..++.+++|+.|++++|++++..+..   +..+++|+.|+
T Consensus       489 ~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          489 EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            888888888885 45 6888888888888888887665 788888888888888888888654432   23478888876


Q ss_pred             C
Q 047977          558 L  558 (569)
Q Consensus       558 l  558 (569)
                      +
T Consensus       567 l  567 (567)
T 1dce_A          567 T  567 (567)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=1e-15  Score=133.87  Aligned_cols=128  Identities=24%  Similarity=0.290  Sum_probs=95.0

Q ss_pred             ceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCC
Q 047977          434 INVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGN  513 (569)
Q Consensus       434 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  513 (569)
                      +.++++++.+. .+|..+  .+++++|++++|.++ .+|..+.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            45666666665 455433  247777888887777 56677777888888888888887777777788888888888888


Q ss_pred             cccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcc
Q 047977          514 HFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG  565 (569)
Q Consensus       514 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  565 (569)
                      .++...+..|..+++|+.|++++|.++...+..+..+++|++|++++|++..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            8776666678888888888888888886666667778888888888888754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=3.4e-16  Score=134.12  Aligned_cols=131  Identities=16%  Similarity=0.146  Sum_probs=79.4

Q ss_pred             CCceEEcccCcCc-cccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeC
Q 047977          432 SLINVSFSNNSFS-GELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRL  510 (569)
Q Consensus       432 ~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  510 (569)
                      +++.|++++|.+. +.+|..+..+++|+.|++++|.++..  ..+..+++|++|++++|.+.+..|..++.+++|++|++
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            5666666666654 34455555566666666666666533  55566666666666666666555555556666666666


Q ss_pred             cCCcccccC-CcCcccCCCCCEEECCCCcceecCC---cCccCCCCCCeEeCcCCcCc
Q 047977          511 SGNHFIGEI-SPDWGECRNLSNLQLDRNKISGGIP---AELGNLTRLGVLSLDSNELT  564 (569)
Q Consensus       511 ~~~~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n~~~  564 (569)
                      ++|.+.+.. +..+..+++|+.|++++|.+++..+   ..+..+++|++|++++|++.
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            666665431 1456666666666666666664333   35566666666666666653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.64  E-value=7.1e-14  Score=137.39  Aligned_cols=159  Identities=12%  Similarity=0.090  Sum_probs=81.2

Q ss_pred             CcccCCcCccCCC-CCCEEeCCCCcCcccCCccccCCCCCcEEEccCCc---cccCcchhccCCCCCCEEECCCCCCCCC
Q 047977            8 ISGPIPPAIGTLS-NLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNS---LNGAFPFQLSNLRKVRYLDLGGNFLETP   83 (569)
Q Consensus         8 ~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~   83 (569)
                      ++.+...+|.+++ .|+.+.+..+ ++.+...+|.+|.+|+.+.+..+.   ++..-..+|.++.+|+.+.+..+ +..+
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I  128 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI  128 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence            4455566676664 4777777654 554666677777777777765542   33333455666666666655433 3444


Q ss_pred             CCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCC
Q 047977           84 DWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSK  163 (569)
Q Consensus        84 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  163 (569)
                      ...+|..+.+|+.+.+...... .....+..+..|+.+.+..+. + .+...+|.+ ..|+.+.+...-. .....++..
T Consensus       129 ~~~aF~~c~~L~~i~lp~~~~~-I~~~~F~~c~~L~~i~~~~~~-~-~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~  203 (394)
T 4gt6_A          129 DSEAFHHCEELDTVTIPEGVTS-VADGMFSYCYSLHTVTLPDSV-T-AIEERAFTG-TALTQIHIPAKVT-RIGTNAFSE  203 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTTC-C-EECTTTTTT-CCCSEEEECTTCC-EECTTTTTT
T ss_pred             hhhhhhhhcccccccccceeee-ecccceeccccccccccccee-e-Eeccccccc-cceeEEEECCccc-ccccchhhh
Confidence            4455556666666665443222 333445555555555554431 1 233333332 3455555443221 133334444


Q ss_pred             CCCCCEEEcc
Q 047977          164 LSNLTVLRLA  173 (569)
Q Consensus       164 ~~~L~~L~l~  173 (569)
                      +.+++.....
T Consensus       204 c~~l~~~~~~  213 (394)
T 4gt6_A          204 CFALSTITSD  213 (394)
T ss_dssp             CTTCCEEEEC
T ss_pred             ccccceeccc
Confidence            4455444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=1.8e-15  Score=130.75  Aligned_cols=133  Identities=16%  Similarity=0.208  Sum_probs=102.7

Q ss_pred             CCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCc
Q 047977          432 SLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLS  511 (569)
Q Consensus       432 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  511 (569)
                      ..+.++++++.+. .+|..+  .++|++|++++|++.+..+..+.++++|++|++++|.+++..+..++.+++|++|+++
T Consensus         8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            3456777777665 444333  3578888888888875555567888888888888888887767777888888888888


Q ss_pred             CCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccC
Q 047977          512 GNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKN  567 (569)
Q Consensus       512 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  567 (569)
                      +|.+++..+..++.+++|+.|++++|.+++..+..+..+++|++|++++|++.+..
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            88888666666788888888888888888766666788888888999888888754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=4.3e-16  Score=130.54  Aligned_cols=128  Identities=19%  Similarity=0.168  Sum_probs=104.9

Q ss_pred             CCCceEEcccCcCc-cccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEe
Q 047977          431 PSLINVSFSNNSFS-GELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIR  509 (569)
Q Consensus       431 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  509 (569)
                      ++++.|++++|.+. +.+|..+..+++|+.|++++|.+++.  ..+.++++|++|++++|.+.+.+|..++.+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            47888888888887 56777777788899999999988744  6788889999999999999877788888899999999


Q ss_pred             CcCCccccc-CCcCcccCCCCCEEECCCCcceecCC---cCccCCCCCCeEeCcC
Q 047977          510 LSGNHFIGE-ISPDWGECRNLSNLQLDRNKISGGIP---AELGNLTRLGVLSLDS  560 (569)
Q Consensus       510 l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~  560 (569)
                      +++|++.+. .+..++.+++|+.|++++|.+++..+   ..+..+++|++|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999998753 34678889999999999999886555   4678899999998864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=3.6e-18  Score=174.64  Aligned_cols=204  Identities=16%  Similarity=0.151  Sum_probs=144.0

Q ss_pred             cCCCCCcEEecccccccccCCccccCCCCCCEEEccCCc-------------cccccCcccccCCCCCEEE-cccCcccc
Q 047977          307 GLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQ-------------LSGTIPPTLWNLTNLLSLQ-LFFNNLSG  372 (569)
Q Consensus       307 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~  372 (569)
                      ...+.|+.|++++|.+. .+|..++.+++|++|++++|.             .....+..+..+++|+.|+ ++.+.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            34567777777777766 566667777777777775543             2223344556666666666 4444322 


Q ss_pred             cCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhh
Q 047977          373 TIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELC  452 (569)
Q Consensus       373 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  452 (569)
                                .|+.+.+.+|.+.. ++     ...|+.|++++|.+++ +|. +..++ +|+.|++++|.+. .+|..+.
T Consensus       424 ----------~L~~l~l~~n~i~~-l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~-~L~~L~Ls~N~l~-~lp~~~~  483 (567)
T 1dce_A          424 ----------DLRSKFLLENSVLK-ME-----YADVRVLHLAHKDLTV-LCH-LEQLL-LVTHLDLSHNRLR-ALPPALA  483 (567)
T ss_dssp             ----------HHHHHHHHHHHHHH-HH-----HTTCSEEECTTSCCSS-CCC-GGGGT-TCCEEECCSSCCC-CCCGGGG
T ss_pred             ----------hhhhhhhhcccccc-cC-----ccCceEEEecCCCCCC-CcC-ccccc-cCcEeecCccccc-ccchhhh
Confidence                      23333334444432 11     1247788888888875 454 66666 8888999988887 7788888


Q ss_pred             CCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccch-hhhhcCCCCCcEEeCcCCcccccCCcC---cccCCC
Q 047977          453 SGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNI-TRAFGVHPRLDFIRLSGNHFIGEISPD---WGECRN  528 (569)
Q Consensus       453 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~---l~~~~~  528 (569)
                      .+++|+.|++++|.+++ +| .+.++++|+.|++++|.+++.. |..++.+++|+.|++++|++.+..+..   +..+|+
T Consensus       484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~  561 (567)
T 1dce_A          484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS  561 (567)
T ss_dssp             GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred             cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence            89999999999999984 56 7889999999999999998776 888999999999999999988654432   445889


Q ss_pred             CCEEEC
Q 047977          529 LSNLQL  534 (569)
Q Consensus       529 L~~L~l  534 (569)
                      |+.|++
T Consensus       562 L~~L~l  567 (567)
T 1dce_A          562 VSSILT  567 (567)
T ss_dssp             CSEEEC
T ss_pred             cCccCC
Confidence            998864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=4.2e-15  Score=127.24  Aligned_cols=133  Identities=16%  Similarity=0.116  Sum_probs=87.7

Q ss_pred             CCCCEEEccCCccc-ccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEE
Q 047977          406 VNLNKFSVFTNNFS-GSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRV  484 (569)
Q Consensus       406 ~~L~~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  484 (569)
                      ++++.+++++|.++ +.+|..+..++ +|++|++++|.+.+.  ..+..+++|++|++++|.+.+..|..+.++++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            45556666666555 34444444444 666666666666533  455666777777777777775566666667777777


Q ss_pred             EccCCccccch-hhhhcCCCCCcEEeCcCCcccccCC---cCcccCCCCCEEECCCCccee
Q 047977          485 RFDGNQFTGNI-TRAFGVHPRLDFIRLSGNHFIGEIS---PDWGECRNLSNLQLDRNKISG  541 (569)
Q Consensus       485 ~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~n~~~~  541 (569)
                      ++++|.+++.. +..++.+++|++|++++|++.+..+   ..+..+++|+.|++++|.+..
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            77777776532 2567777778888887777774433   357777778888887777763

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.58  E-value=8.1e-16  Score=162.36  Aligned_cols=223  Identities=18%  Similarity=0.180  Sum_probs=109.3

Q ss_pred             CCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEc
Q 047977          310 TKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDV  389 (569)
Q Consensus       310 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  389 (569)
                      +.++.|++.++.+.. .+..     .|+.++++.+.+.              .+++..|.+. ..+..+..++.|+.|++
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~-----~l~~l~Ls~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L~L  231 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQA-----LLQHKKLSQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHALDL  231 (727)
T ss_dssp             ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred             CccceEEeeCCCCCc-chhh-----HhhcCccCccccc--------------Ccccccccee-cChhhhccCCCCcEEEC
Confidence            456777777776653 2222     2344444444433              1222233333 34555666777777777


Q ss_pred             cCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCccee
Q 047977          390 NTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTG  469 (569)
Q Consensus       390 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  469 (569)
                      ++|.+. .++..+..+++|+.|++++|.++ .+|..+..+. +|+.|+|++|.++ .+|..+..+++|+.|+|++|.++ 
T Consensus       232 s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-  306 (727)
T 4b8c_D          232 SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLS-NLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-  306 (727)
T ss_dssp             TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGT-TCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-
T ss_pred             CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCC-CCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-
Confidence            777776 56666667788888888888877 6777777776 8888888888887 67888888889999999999887 


Q ss_pred             eCCccccCCCCCcEEEccCCccccchhhhhcCCCC-CcEEeCcCCcccccCCcCcccCCCCCEEECCCC--------cce
Q 047977          470 SLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPR-LDFIRLSGNHFIGEISPDWGECRNLSNLQLDRN--------KIS  540 (569)
Q Consensus       470 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n--------~~~  540 (569)
                      .+|..|.++++|+.|+|++|.+++.+|..+..+.. ...+++++|.+.+.+|..      |+.|+++.|        .+.
T Consensus       307 ~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~  380 (727)
T 4b8c_D          307 TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQ  380 (727)
T ss_dssp             CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------------------
T ss_pred             ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCcc
Confidence            77878888999999999999998888877755432 233678888887666643      556666666        333


Q ss_pred             ecCCcCccCCCCCCeEeCcCCcCc
Q 047977          541 GGIPAELGNLTRLGVLSLDSNELT  564 (569)
Q Consensus       541 ~~~~~~l~~l~~L~~L~l~~n~~~  564 (569)
                      +..+..+..+..++...++.|.+.
T Consensus       381 ~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          381 QSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             ---------------------CCC
T ss_pred             ccccchhhcccccceeeeeccccc
Confidence            344444555666677777777775

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.57  E-value=7.4e-13  Score=130.13  Aligned_cols=124  Identities=15%  Similarity=0.212  Sum_probs=63.4

Q ss_pred             CCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCc
Q 047977          432 SLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLS  511 (569)
Q Consensus       432 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  511 (569)
                      .|+.+.+.+.... .....+..+.+|+.+.+.. .+......+|.+|.+|+.++|..+ ++.....+|.+|++|+++.+.
T Consensus       266 ~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip  342 (394)
T 4gt6_A          266 YLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP  342 (394)
T ss_dssp             SCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred             cccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence            4555554433221 2223445556666666643 333344456666777777776543 444455666677777777765


Q ss_pred             CCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCc
Q 047977          512 GNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNE  562 (569)
Q Consensus       512 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  562 (569)
                      .+ ++.....+|.+|++|+.+++.++....   .++..+++|+.+.+..+.
T Consensus       343 ~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          343 SS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             TT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred             cc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence            43 443444557777777777776665432   345566666666665543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.57  E-value=2.5e-14  Score=125.13  Aligned_cols=127  Identities=25%  Similarity=0.295  Sum_probs=69.2

Q ss_pred             cCCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCc-cccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCC
Q 047977            2 DLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPS-EMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFL   80 (569)
Q Consensus         2 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~   80 (569)
                      +++++++.. +|..+..  ++++|++++|.+....+. .+.++++|++|++++|.+++..|..|.++++|++|++++|.+
T Consensus        14 ~~s~~~l~~-ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l   90 (192)
T 1w8a_A           14 DCTGRGLKE-IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             ECTTSCCSS-CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             EcCCCCcCc-CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence            455555542 2332222  556666666655544332 355555666666666655555555555556666666666655


Q ss_pred             CCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccC
Q 047977           81 ETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGL  131 (569)
Q Consensus        81 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  131 (569)
                      ....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            555555555555566666665555555555555555555555555555433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=5.4e-15  Score=123.78  Aligned_cols=127  Identities=17%  Similarity=0.186  Sum_probs=78.2

Q ss_pred             CCCCEEEccCCccc-ccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEE
Q 047977          406 VNLNKFSVFTNNFS-GSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRV  484 (569)
Q Consensus       406 ~~L~~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  484 (569)
                      ++++.+++++|.++ +.+|..+..++ +|+.|++++|.+.+.  ..+..+++|+.|++++|.+++..|..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFE-ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCT-TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcC-CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            44455555555544 34444444443 555556655555433  445556677777777777764455556667777777


Q ss_pred             EccCCccccc-hhhhhcCCCCCcEEeCcCCcccccCC---cCcccCCCCCEEECC
Q 047977          485 RFDGNQFTGN-ITRAFGVHPRLDFIRLSGNHFIGEIS---PDWGECRNLSNLQLD  535 (569)
Q Consensus       485 ~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~  535 (569)
                      ++++|.+++. .+..++.+++|++|++++|++.+..+   ..+..+++|+.|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            7777777653 33667777777777777777765544   357777777777765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=5.1e-14  Score=123.03  Aligned_cols=108  Identities=19%  Similarity=0.238  Sum_probs=66.2

Q ss_pred             CCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCc
Q 047977          432 SLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLS  511 (569)
Q Consensus       432 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  511 (569)
                      +++.|++++|.+. .+|..+..+++|+.|++++|.++...+..|.++++|++|++++|.++...+..|+.+++|++|+++
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            5566666666554 445555556666666666666664444556666666666666666665555566666666666666


Q ss_pred             CCcccccCCcCcccCCCCCEEECCCCcce
Q 047977          512 GNHFIGEISPDWGECRNLSNLQLDRNKIS  540 (569)
Q Consensus       512 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  540 (569)
                      +|.+....+..|..+++|+.|++++|++.
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            66666444445666666666666666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=1.6e-14  Score=124.63  Aligned_cols=132  Identities=13%  Similarity=0.116  Sum_probs=59.9

Q ss_pred             ccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCC
Q 047977          402 ISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNL  481 (569)
Q Consensus       402 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  481 (569)
                      +..+.+++.+++++|.++. ++ .+....++|+.|++++|.+.+.  ..+..+++|+.|++++|.++...+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCch-hH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            3445555666666655552 22 2333333555555555554432  234444455555555555542222223444555


Q ss_pred             cEEEccCCccccchhh--hhcCCCCCcEEeCcCCcccccCCcC----cccCCCCCEEECCCCcc
Q 047977          482 NRVRFDGNQFTGNITR--AFGVHPRLDFIRLSGNHFIGEISPD----WGECRNLSNLQLDRNKI  539 (569)
Q Consensus       482 ~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~n~~  539 (569)
                      ++|++++|.+.. ++.  .++.+++|++|++++|++. ..|..    +..+++|+.|++++|..
T Consensus        91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            555555554432 222  3444555555555555544 22322    44444555555544443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=1.9e-13  Score=117.99  Aligned_cols=128  Identities=23%  Similarity=0.262  Sum_probs=66.7

Q ss_pred             CEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccc
Q 047977           23 TFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYN  102 (569)
Q Consensus        23 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  102 (569)
                      +.++++++++. .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+.......|..+++|++|++++|
T Consensus        10 ~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            45555555554 2232222  45555555555555444444555555555555555555554444555555555555555


Q ss_pred             cccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCccc
Q 047977          103 ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQ  154 (569)
Q Consensus       103 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  154 (569)
                      .+.+..+..+..+++|++|++++|.++ .++...|..+++|++|++++|.+.
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCee
Confidence            555444444455555555555555555 334444455555555555555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=3e-16  Score=138.35  Aligned_cols=132  Identities=14%  Similarity=0.168  Sum_probs=71.9

Q ss_pred             hhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCC
Q 047977          425 DFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPR  504 (569)
Q Consensus       425 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~  504 (569)
                      .+..++ +|++|++++|.+.+ +| .+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++ ++ .++.+++
T Consensus        43 ~~~~l~-~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLK-ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHTT-TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HHhcCC-CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence            444444 55555555555543 34 4555556666666666555 445445555566666666666554 22 3555666


Q ss_pred             CcEEeCcCCcccccCC-cCcccCCCCCEEECCCCcceecCCcC----------ccCCCCCCeEeCcCCcCc
Q 047977          505 LDFIRLSGNHFIGEIS-PDWGECRNLSNLQLDRNKISGGIPAE----------LGNLTRLGVLSLDSNELT  564 (569)
Q Consensus       505 L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~----------l~~l~~L~~L~l~~n~~~  564 (569)
                      |++|++++|.+.+..+ ..+..+++|+.|++++|++.+..|..          +..+++|++|+  +|+++
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            6666666666553221 24555666666666666665443332          55566666665  55554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.49  E-value=8.8e-15  Score=154.48  Aligned_cols=142  Identities=27%  Similarity=0.248  Sum_probs=77.2

Q ss_pred             CccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCC
Q 047977          303 PPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMA  382 (569)
Q Consensus       303 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  382 (569)
                      +..+..++.|+.|++++|.+. .++..+..+++|++|+|++|.+. .++..|..+++|++|++++|.++ .++..+..++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence            344555556666666666555 44444445566666666666655 44555566666666666666655 4455556666


Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccC
Q 047977          383 SLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELP  448 (569)
Q Consensus       383 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  448 (569)
                      +|+.|++++|.+. .+|..+..+++|+.|++++|.+++.+|..+.........+++++|.+.+.+|
T Consensus       294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            6666666666555 5555566666666666666666655555443322122234555555554444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.49  E-value=1.5e-13  Score=117.35  Aligned_cols=107  Identities=18%  Similarity=0.194  Sum_probs=71.8

Q ss_pred             CcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCC
Q 047977          457 LEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDR  536 (569)
Q Consensus       457 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  536 (569)
                      .+.++++++.++ .+|..+.  ++|++|++++|.+++..+..|+.+++|++|++++|.+.+..+..|..+++|+.|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            356666666666 4554442  6677777777777766666677777777777777777655555567777777777777


Q ss_pred             CcceecCCcCccCCCCCCeEeCcCCcCccc
Q 047977          537 NKISGGIPAELGNLTRLGVLSLDSNELTGK  566 (569)
Q Consensus       537 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  566 (569)
                      |++++..+..+..+++|++|++++|+++..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            777765555677777777777777777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=9.9e-14  Score=119.56  Aligned_cols=127  Identities=13%  Similarity=0.145  Sum_probs=90.7

Q ss_pred             CCceEEcccCcCccccChhhhCC-CCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeC
Q 047977          432 SLINVSFSNNSFSGELPYELCSG-FALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRL  510 (569)
Q Consensus       432 ~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  510 (569)
                      +|+.|++++|.+. .++. +..+ ++|+.|++++|.+++.  ..+..+++|++|++++|.+++..+..++.+++|++|++
T Consensus        20 ~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           20 RDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             SCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            7788888888776 3343 3343 4788888888877743  56777788888888888887655555677888888888


Q ss_pred             cCCcccccCCc--CcccCCCCCEEECCCCcceecCCc----CccCCCCCCeEeCcCCcCc
Q 047977          511 SGNHFIGEISP--DWGECRNLSNLQLDRNKISGGIPA----ELGNLTRLGVLSLDSNELT  564 (569)
Q Consensus       511 ~~~~~~~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~~~  564 (569)
                      ++|.+. .+|.  .++.+++|+.|++++|+++. .|.    .+..+++|+.|++++|++.
T Consensus        96 ~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           96 TNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            888775 3444  67778888888888888773 444    3677888888888777653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.45  E-value=4.4e-13  Score=114.81  Aligned_cols=105  Identities=18%  Similarity=0.224  Sum_probs=57.2

Q ss_pred             cEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCC
Q 047977          458 EELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRN  537 (569)
Q Consensus       458 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n  537 (569)
                      +.+++++++++ .+|..+.  ++|++|++++|.+.+..+..|+.+++|++|++++|.+++..+..|+.+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            44555555554 4444332  55555555555555555555555555666666655555443334555556666666666


Q ss_pred             cceecCCcCccCCCCCCeEeCcCCcCcc
Q 047977          538 KISGGIPAELGNLTRLGVLSLDSNELTG  565 (569)
Q Consensus       538 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~  565 (569)
                      ++++..+..+..+++|++|++++|++..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccc
Confidence            5554444445556666666666665543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.42  E-value=1.3e-10  Score=113.47  Aligned_cols=118  Identities=17%  Similarity=0.176  Sum_probs=68.5

Q ss_pred             CCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCc
Q 047977          432 SLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLS  511 (569)
Q Consensus       432 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  511 (569)
                      .|+.+.+..+ +.......+..+.+|+.+.+..+ +.......|.+|++|+.+++.++.+......+|.+|++|+.+++.
T Consensus       241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            5555555443 22122334455566666666543 332444566677777777776666665556667777777777775


Q ss_pred             CCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCC
Q 047977          512 GNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRL  553 (569)
Q Consensus       512 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L  553 (569)
                      .+ ++.....+|.+|++|+.+.+..+ ++.+...+|.+++.+
T Consensus       319 ~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          319 TA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             TT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             cc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence            43 44344456777777777777544 555566666666433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=4.4e-15  Score=130.80  Aligned_cols=132  Identities=20%  Similarity=0.234  Sum_probs=87.0

Q ss_pred             cccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCC
Q 047977          401 NISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSN  480 (569)
Q Consensus       401 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  480 (569)
                      .+..+++|+.|++++|.+++ +| .+..++ +|+.|++++|.+. .+|..+..+++|+.|++++|++++ ++ .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~-~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGME-NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHT-TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCC-CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence            55566666666666666654 44 555554 7777777777665 455555556677777777777763 33 4667777


Q ss_pred             CcEEEccCCccccchh-hhhcCCCCCcEEeCcCCcccccCCcC----------cccCCCCCEEECCCCcce
Q 047977          481 LNRVRFDGNQFTGNIT-RAFGVHPRLDFIRLSGNHFIGEISPD----------WGECRNLSNLQLDRNKIS  540 (569)
Q Consensus       481 L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~----------l~~~~~L~~L~l~~n~~~  540 (569)
                      |++|++++|.+....+ ..+..+++|++|++++|++.+..|..          +..+++|+.|+  ++.++
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            7777777777765332 46777778888888888776554432          67777888776  55554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.41  E-value=1.5e-10  Score=113.15  Aligned_cols=308  Identities=9%  Similarity=0.041  Sum_probs=207.8

Q ss_pred             ccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCC
Q 047977          207 SSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWT  286 (569)
Q Consensus       207 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  286 (569)
                      .|+....+|+++.+.+ .++.+...+|.+|.+|+.+.+..+ ++.....+|.++ +|+.+.+..+ +. .+...++..+ 
T Consensus        40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-  113 (379)
T 4h09_A           40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-  113 (379)
T ss_dssp             TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-
T ss_pred             cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-
Confidence            4666778899999975 566677888999999999998754 565667777776 6777776543 22 4455556554 


Q ss_pred             CCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCcccc------------ccCccc
Q 047977          287 ELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSG------------TIPPTL  354 (569)
Q Consensus       287 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------------~~~~~~  354 (569)
                      +|+.+.+.... ......+|..+ +++.+.+..+ ++......|..+..++.+.+.......            .....+
T Consensus       114 ~L~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (379)
T 4h09_A          114 DLDDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY  190 (379)
T ss_dssp             CCSEEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred             CcccccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccc
Confidence            78999887643 33444555554 5777666553 333445677788888888876653321            112234


Q ss_pred             ccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCc
Q 047977          355 WNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLI  434 (569)
Q Consensus       355 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~  434 (569)
                      ..+..+..+.+...... .....+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++..-...+..+. .|+
T Consensus       191 ~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~-~l~  266 (379)
T 4h09_A          191 PAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCT-ALK  266 (379)
T ss_dssp             CTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCT-TCC
T ss_pred             cccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceee-hhc
Confidence            45566666666554332 44556677788888888654 33234456778888999888765 4434445555555 888


Q ss_pred             eEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCc
Q 047977          435 NVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNH  514 (569)
Q Consensus       435 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  514 (569)
                      .+.+... +.......+..|.+|+.+.+.++.+......+|.+|.+|+.++|..+ +......+|.+|++|+++.+..+ 
T Consensus       267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-  343 (379)
T 4h09_A          267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-  343 (379)
T ss_dssp             EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-
T ss_pred             ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-
Confidence            8888654 33233446677889999999888887666788999999999999754 66566788999999999988654 


Q ss_pred             ccccCCcCcccCCCCC
Q 047977          515 FIGEISPDWGECRNLS  530 (569)
Q Consensus       515 ~~~~~~~~l~~~~~L~  530 (569)
                      ++.....+|.++..++
T Consensus       344 v~~I~~~aF~~c~~~~  359 (379)
T 4h09_A          344 ITLIESGAFEGSSITK  359 (379)
T ss_dssp             CCEECTTTTTTSSCCC
T ss_pred             cCEEchhHhhCCCCCc
Confidence            5545566788775443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.37  E-value=2.5e-14  Score=138.31  Aligned_cols=160  Identities=13%  Similarity=0.102  Sum_probs=86.2

Q ss_pred             CCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhh-----hCCCCCcEEEccCCcceee----CCcccc
Q 047977          406 VNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYEL-----CSGFALEELTVNGNNFTGS----LPACMR  476 (569)
Q Consensus       406 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~----~~~~l~  476 (569)
                      .+|+.|++++|.++......+....++|+.|++++|.+++.....+     ...++|++|++++|.++..    +...+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            3444455555444322222222211256666666666654332222     1345677777777766532    223345


Q ss_pred             CCCCCcEEEccCCccccc----hhhhhcCCCCCcEEeCcCCccccc----CCcCcccCCCCCEEECCCCcceecCCcCcc
Q 047977          477 NCSNLNRVRFDGNQFTGN----ITRAFGVHPRLDFIRLSGNHFIGE----ISPDWGECRNLSNLQLDRNKISGGIPAELG  548 (569)
Q Consensus       477 ~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~  548 (569)
                      .+++|++|+|++|.+...    +...+..+++|++|++++|.+++.    +...+..+++|+.|++++|.++......+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence            667777777777777543    245566677777777777777643    223345567778888888777754444443


Q ss_pred             CC---C--CCCeEe--CcCCcCcc
Q 047977          549 NL---T--RLGVLS--LDSNELTG  565 (569)
Q Consensus       549 ~l---~--~L~~L~--l~~n~~~~  565 (569)
                      .+   .  .|+.+.  +.+|.++.
T Consensus       261 ~~~~~~~~~L~~l~~ll~~~~~~~  284 (372)
T 3un9_A          261 DLGGAAEGGARVVVSLTEGTAVSE  284 (372)
T ss_dssp             HCC------CEEECCCC----CHH
T ss_pred             HHhcCCCccchhhHhhhcCCccCH
Confidence            32   1  156666  66665543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.36  E-value=3e-12  Score=109.23  Aligned_cols=103  Identities=16%  Similarity=0.179  Sum_probs=47.9

Q ss_pred             CEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccC
Q 047977          409 NKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDG  488 (569)
Q Consensus       409 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  488 (569)
                      +.++++++.++. +|..+.   +.++.|++++|.+.+..+..+..+++|++|++++|+++...+..|.++++|++|++++
T Consensus        12 ~~l~~s~n~l~~-ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TEEECTTSCCSS-CCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            445555555442 333221   2455555555555443344444445555555555554433333344445555555555


Q ss_pred             CccccchhhhhcCCCCCcEEeCcCCcc
Q 047977          489 NQFTGNITRAFGVHPRLDFIRLSGNHF  515 (569)
Q Consensus       489 ~~~~~~~~~~l~~l~~L~~L~l~~~~~  515 (569)
                      |.+.+..+..|+.+++|++|++++|++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            555444444444455555555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.36  E-value=7.4e-14  Score=135.04  Aligned_cols=162  Identities=14%  Similarity=0.123  Sum_probs=120.5

Q ss_pred             CCCCCEEEccCCcccccCCchhhcc----CCCCceEEcccCcCccccChhhh-CCCCCcEEEccCCcceeeCCccc----
Q 047977          405 LVNLNKFSVFTNNFSGSIPGDFGKF----SPSLINVSFSNNSFSGELPYELC-SGFALEELTVNGNNFTGSLPACM----  475 (569)
Q Consensus       405 l~~L~~l~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l----  475 (569)
                      ++.++.+++++|.++......+...    +++|+.|++++|.+++.....+. .+.+|+.|++++|.+++.....+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            3567777777777664333333322    24999999999998754433333 35689999999999875433333    


Q ss_pred             -cCCCCCcEEEccCCccccc----hhhhhcCCCCCcEEeCcCCcccccC----CcCcccCCCCCEEECCCCcceecC---
Q 047977          476 -RNCSNLNRVRFDGNQFTGN----ITRAFGVHPRLDFIRLSGNHFIGEI----SPDWGECRNLSNLQLDRNKISGGI---  543 (569)
Q Consensus       476 -~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~n~~~~~~---  543 (569)
                       ...++|++|+|++|.++..    +...+..+++|++|++++|.+.+..    +..+..+++|+.|++++|.+++..   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             3578999999999999753    4455678999999999999987543    456788899999999999998643   


Q ss_pred             -CcCccCCCCCCeEeCcCCcCccc
Q 047977          544 -PAELGNLTRLGVLSLDSNELTGK  566 (569)
Q Consensus       544 -~~~l~~l~~L~~L~l~~n~~~~~  566 (569)
                       +.++..+++|++|++++|+|++.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHH
Confidence             34455679999999999999753

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.33  E-value=5e-12  Score=108.17  Aligned_cols=104  Identities=17%  Similarity=0.193  Sum_probs=50.5

Q ss_pred             CEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccC
Q 047977          409 NKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDG  488 (569)
Q Consensus       409 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  488 (569)
                      +.++++++.+. .+|..+.   ++|+.|++++|.+.+..+..+..+++|+.|++++|+++...+..|.++++|++|++++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            44555555543 3333322   2555555555555544444444555555555555555532223344555555555555


Q ss_pred             CccccchhhhhcCCCCCcEEeCcCCccc
Q 047977          489 NQFTGNITRAFGVHPRLDFIRLSGNHFI  516 (569)
Q Consensus       489 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~  516 (569)
                      |.+.+..+..|+.+++|++|++++|++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            5555444444555555555555555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.19  E-value=6.1e-11  Score=114.45  Aligned_cols=102  Identities=19%  Similarity=0.156  Sum_probs=51.0

Q ss_pred             EEcccC-cCccccChhhhCCCCCcEEEccC-CcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCC
Q 047977          436 VSFSNN-SFSGELPYELCSGFALEELTVNG-NNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGN  513 (569)
Q Consensus       436 L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  513 (569)
                      ++++++ .+. .+|. +..+++|+.|+|++ |.+....+..|.++++|+.|+|++|.+++..+..|+.+++|++|+|++|
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            445544 444 3444 44455555555553 5555433344555555555555555555555555555555555555555


Q ss_pred             cccccCCcCcccCCCCCEEECCCCcce
Q 047977          514 HFIGEISPDWGECRNLSNLQLDRNKIS  540 (569)
Q Consensus       514 ~~~~~~~~~l~~~~~L~~L~l~~n~~~  540 (569)
                      .+.+..+..|..++ |+.|++.+|.+.
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            55433333344333 555555555444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.07  E-value=4.8e-10  Score=108.10  Aligned_cols=102  Identities=16%  Similarity=0.120  Sum_probs=56.2

Q ss_pred             EEccCC-cccccCCchhhccCCCCceEEccc-CcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccC
Q 047977          411 FSVFTN-NFSGSIPGDFGKFSPSLINVSFSN-NSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDG  488 (569)
Q Consensus       411 l~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  488 (569)
                      ++.+++ .++ .+|. +..+. +|+.|+|++ |.+.+..+..+..+++|+.|+|++|++++..+..|.++++|++|+|++
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEcCCCCCCC-ccCC-CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            444444 444 2444 44443 566666664 555544444555566666666666666655555556666666666666


Q ss_pred             CccccchhhhhcCCCCCcEEeCcCCccc
Q 047977          489 NQFTGNITRAFGVHPRLDFIRLSGNHFI  516 (569)
Q Consensus       489 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~  516 (569)
                      |.+++..+..+..++ |++|++.+|++.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            666554444444444 666666666554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.94  E-value=5.3e-10  Score=106.96  Aligned_cols=156  Identities=15%  Similarity=0.204  Sum_probs=93.2

Q ss_pred             cccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhh--CCCCCcEEEccCC--cc-ee----eC
Q 047977          401 NISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELC--SGFALEELTVNGN--NF-TG----SL  471 (569)
Q Consensus       401 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~~-~~----~~  471 (569)
                      .+..+++|+.|.+.++.-. ..+. + .. ++|+.|++..|.+.+.....+.  .+++|+.|+|+.+  .. ..    .+
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~~-~-~~-~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIGK-K-PR-PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCCS-C-BC-TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHhcCCCCcEEEEeCCCCc-eecc-c-cC-CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            3455666666666655211 1121 1 22 3777887777776544333443  5778888877531  11 10    11


Q ss_pred             Cccc--cCCCCCcEEEccCCccccchhhhh---cCCCCCcEEeCcCCccccc----CCcCcccCCCCCEEECCCCcceec
Q 047977          472 PACM--RNCSNLNRVRFDGNQFTGNITRAF---GVHPRLDFIRLSGNHFIGE----ISPDWGECRNLSNLQLDRNKISGG  542 (569)
Q Consensus       472 ~~~l--~~~~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~  542 (569)
                      ...+  ..+|+|+.|++++|.+....+..+   ..+++|++|+++.|.+.+.    ++..++.+++|+.|++++|.++..
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            1122  357888888888888765433333   3578888888888887653    334456678888888888887754


Q ss_pred             CCcCccC-CCCCCeEeCcCCc
Q 047977          543 IPAELGN-LTRLGVLSLDSNE  562 (569)
Q Consensus       543 ~~~~l~~-l~~L~~L~l~~n~  562 (569)
                      ....+.. +  ..++++++++
T Consensus       323 ~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          323 MKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHHHc--CCEEEecCCc
Confidence            4444443 3  4557777765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.91  E-value=5.8e-10  Score=106.73  Aligned_cols=137  Identities=11%  Similarity=0.176  Sum_probs=96.3

Q ss_pred             hhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCcccc--CCCCCcEEEccCC--cc-cc----chh
Q 047977          426 FGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMR--NCSNLNRVRFDGN--QF-TG----NIT  496 (569)
Q Consensus       426 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~~-~~----~~~  496 (569)
                      +..+ |+|+.|.+++|.-. .++. + ..++|+.|++..|.++......+.  .+|+|++|+|+.+  .. ..    .+.
T Consensus       168 l~~~-P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          168 LDAM-PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHTC-TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HhcC-CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            3344 49999999988311 2232 2 378999999999987644333343  7899999999642  11 11    111


Q ss_pred             hhh--cCCCCCcEEeCcCCcccccCCcCc---ccCCCCCEEECCCCcceecC----CcCccCCCCCCeEeCcCCcCccc
Q 047977          497 RAF--GVHPRLDFIRLSGNHFIGEISPDW---GECRNLSNLQLDRNKISGGI----PAELGNLTRLGVLSLDSNELTGK  566 (569)
Q Consensus       497 ~~l--~~l~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~~~  566 (569)
                      ..+  ..+|+|++|++++|.+.+..+..+   ..+++|+.|+++.|.+.+..    +.++..+++|+.|++++|.++.+
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            223  358999999999999875443333   35789999999999998643    44556789999999999998753

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.77  E-value=1.4e-09  Score=93.92  Aligned_cols=114  Identities=13%  Similarity=0.193  Sum_probs=57.9

Q ss_pred             hhCCCCCcEEEccCC-cceee----CCccccCCCCCcEEEccCCccccc----hhhhhcCCCCCcEEeCcCCccccc---
Q 047977          451 LCSGFALEELTVNGN-NFTGS----LPACMRNCSNLNRVRFDGNQFTGN----ITRAFGVHPRLDFIRLSGNHFIGE---  518 (569)
Q Consensus       451 ~~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~---  518 (569)
                      +...++|++|++++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|++++|.+.+.   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            334455555555555 44321    122344455566666666655432    223344455666666666665432   


Q ss_pred             -CCcCcccCCCCCEEEC--CCCcceecC----CcCccCCCCCCeEeCcCCcCc
Q 047977          519 -ISPDWGECRNLSNLQL--DRNKISGGI----PAELGNLTRLGVLSLDSNELT  564 (569)
Q Consensus       519 -~~~~l~~~~~L~~L~l--~~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~  564 (569)
                       +...+...++|++|++  ++|.+....    ...+...++|++|++++|.+.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence             2334555566666666  556655322    233344456666666666553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.61  E-value=7.7e-09  Score=86.41  Aligned_cols=87  Identities=8%  Similarity=0.045  Sum_probs=68.3

Q ss_pred             CCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCc-cccchhhhhcCC----CCCcEEeCcCCc-ccccCCcCcccCC
Q 047977          454 GFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQ-FTGNITRAFGVH----PRLDFIRLSGNH-FIGEISPDWGECR  527 (569)
Q Consensus       454 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~l----~~L~~L~l~~~~-~~~~~~~~l~~~~  527 (569)
                      ...|++|++++|.+++.-...+.+|++|++|+|++|. +++.....+..+    ++|++|++++|. +++.....+..++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            3578999999998876666677889999999999985 676666666664    579999999985 7766556678889


Q ss_pred             CCCEEECCCCc-ce
Q 047977          528 NLSNLQLDRNK-IS  540 (569)
Q Consensus       528 ~L~~L~l~~n~-~~  540 (569)
                      +|+.|++++|. ++
T Consensus       140 ~L~~L~L~~c~~It  153 (176)
T 3e4g_A          140 NLKYLFLSDLPGVK  153 (176)
T ss_dssp             TCCEEEEESCTTCC
T ss_pred             CCCEEECCCCCCCC
Confidence            99999999885 55

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.61  E-value=1.6e-08  Score=87.21  Aligned_cols=109  Identities=13%  Similarity=0.182  Sum_probs=67.1

Q ss_pred             CCceEEcccC-cCccc----cChhhhCCCCCcEEEccCCcceee----CCccccCCCCCcEEEccCCccccc----hhhh
Q 047977          432 SLINVSFSNN-SFSGE----LPYELCSGFALEELTVNGNNFTGS----LPACMRNCSNLNRVRFDGNQFTGN----ITRA  498 (569)
Q Consensus       432 ~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~  498 (569)
                      .|++|++++| .+.+.    +...+...++|++|++++|.+.+.    +...+...++|++|+|++|.+...    +..+
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~  116 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA  116 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence            5666666666 55432    223344456677777777766532    223445556777777777777643    3455


Q ss_pred             hcCCCCCcEEeC--cCCccccc----CCcCcccCCCCCEEECCCCcce
Q 047977          499 FGVHPRLDFIRL--SGNHFIGE----ISPDWGECRNLSNLQLDRNKIS  540 (569)
Q Consensus       499 l~~l~~L~~L~l--~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~  540 (569)
                      +...++|++|++  ++|.+.+.    +...+..+++|++|++++|.+.
T Consensus       117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            666777888888  66776543    2334566677888888877765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.57  E-value=1.9e-08  Score=84.09  Aligned_cols=83  Identities=7%  Similarity=-0.018  Sum_probs=65.7

Q ss_pred             CCceEEcccCcCccccChhhhCCCCCcEEEccCCc-ceeeCCccccCC----CCCcEEEccCCc-cccchhhhhcCCCCC
Q 047977          432 SLINVSFSNNSFSGELPYELCSGFALEELTVNGNN-FTGSLPACMRNC----SNLNRVRFDGNQ-FTGNITRAFGVHPRL  505 (569)
Q Consensus       432 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~----~~L~~L~l~~~~-~~~~~~~~l~~l~~L  505 (569)
                      .|+.|++++|.+++.....+..+++|++|++++|. +++.-...+..+    ++|++|+|++|. +++.....+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            78899999998887766777888999999999984 665444455553    479999999885 777666778888999


Q ss_pred             cEEeCcCCc
Q 047977          506 DFIRLSGNH  514 (569)
Q Consensus       506 ~~L~l~~~~  514 (569)
                      ++|++++|+
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            999999986

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.30  E-value=1.5e-07  Score=85.07  Aligned_cols=80  Identities=21%  Similarity=0.334  Sum_probs=63.8

Q ss_pred             cCCCCCcEEEccCCcccc--chhhhhcCCCCCcEEeCcCCcccccCCcCcccCC--CCCEEECCCCcceecCCc------
Q 047977          476 RNCSNLNRVRFDGNQFTG--NITRAFGVHPRLDFIRLSGNHFIGEISPDWGECR--NLSNLQLDRNKISGGIPA------  545 (569)
Q Consensus       476 ~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~~------  545 (569)
                      .++++|+.|+|++|.+++  .++..++.+++|+.|+|++|.+.+.  ..+..+.  +|++|++++|++.+..|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            578999999999999987  4456778899999999999998755  3344444  899999999999865552      


Q ss_pred             -CccCCCCCCeEe
Q 047977          546 -ELGNLTRLGVLS  557 (569)
Q Consensus       546 -~l~~l~~L~~L~  557 (569)
                       .+..+|+|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             367789999876

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.24  E-value=6.5e-07  Score=80.93  Aligned_cols=80  Identities=18%  Similarity=0.259  Sum_probs=60.8

Q ss_pred             hCCCCCcEEEccCCccee--eCCccccCCCCCcEEEccCCccccchhhhhcCCC--CCcEEeCcCCcccccCCc------
Q 047977          452 CSGFALEELTVNGNNFTG--SLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHP--RLDFIRLSGNHFIGEISP------  521 (569)
Q Consensus       452 ~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~------  521 (569)
                      ..+++|++|+|++|++++  .++..+..+++|+.|+|++|.+.+.  ..+..+.  +|++|++++|++.+..|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            457889999999999885  3445667889999999999998864  2233334  899999999998765542      


Q ss_pred             -CcccCCCCCEEE
Q 047977          522 -DWGECRNLSNLQ  533 (569)
Q Consensus       522 -~l~~~~~L~~L~  533 (569)
                       .+..+|+|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             367888998886

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.72  E-value=2e-05  Score=67.15  Aligned_cols=107  Identities=15%  Similarity=0.179  Sum_probs=46.6

Q ss_pred             CCceEEcccC-cCccc----cChhhhCCCCCcEEEccCCcceeeC----CccccCCCCCcEEEccCCccccc----hhhh
Q 047977          432 SLINVSFSNN-SFSGE----LPYELCSGFALEELTVNGNNFTGSL----PACMRNCSNLNRVRFDGNQFTGN----ITRA  498 (569)
Q Consensus       432 ~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~----~~~~  498 (569)
                      .|+.|+++++ .+.+.    +...+.....|+.|+|++|.+.+.-    .+.+..-+.|++|+|++|.+...    +.++
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a  121 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS  121 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence            4555555543 44322    2223333445555555555554321    12233334555555555555432    2233


Q ss_pred             hcCCCCCcEEeCcCCc---ccc----cCCcCcccCCCCCEEECCCCc
Q 047977          499 FGVHPRLDFIRLSGNH---FIG----EISPDWGECRNLSNLQLDRNK  538 (569)
Q Consensus       499 l~~l~~L~~L~l~~~~---~~~----~~~~~l~~~~~L~~L~l~~n~  538 (569)
                      +...+.|++|++++|.   +..    .+.+.+...+.|+.|+++.|.
T Consensus       122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            4444555555555431   111    122234445555555555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.67  E-value=1.5e-05  Score=67.81  Aligned_cols=115  Identities=10%  Similarity=0.170  Sum_probs=86.6

Q ss_pred             hhhhCCCCCcEEEccCC-cceee----CCccccCCCCCcEEEccCCcccc----chhhhhcCCCCCcEEeCcCCccccc-
Q 047977          449 YELCSGFALEELTVNGN-NFTGS----LPACMRNCSNLNRVRFDGNQFTG----NITRAFGVHPRLDFIRLSGNHFIGE-  518 (569)
Q Consensus       449 ~~~~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~-  518 (569)
                      ..+..-+.|++|+++++ .+.+.    +.+.+..-+.|++|+|++|.+..    .+.+.+...+.|++|+|++|.+.+. 
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            34455678999999986 77542    33556677899999999999975    3445566889999999999999754 


Q ss_pred             ---CCcCcccCCCCCEEECCCCc---cee----cCCcCccCCCCCCeEeCcCCcC
Q 047977          519 ---ISPDWGECRNLSNLQLDRNK---ISG----GIPAELGNLTRLGVLSLDSNEL  563 (569)
Q Consensus       519 ---~~~~l~~~~~L~~L~l~~n~---~~~----~~~~~l~~l~~L~~L~l~~n~~  563 (569)
                         +.+.+...+.|++|++++|.   +..    .+..++..-++|++|+++.|.+
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence               33447888999999998764   342    2345567788999999987764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.02  E-value=0.0012  Score=52.51  Aligned_cols=55  Identities=16%  Similarity=0.101  Sum_probs=27.7

Q ss_pred             EEEccCCccc-cchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcc
Q 047977          483 RVRFDGNQFT-GNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKI  539 (569)
Q Consensus       483 ~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~  539 (569)
                      .++.+++.++ ..+|..  -.++|++|+|++|.++...+..|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555555554 123322  223556666666665544444455555566665555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.27  E-value=0.0065  Score=48.10  Aligned_cols=55  Identities=22%  Similarity=0.370  Sum_probs=26.4

Q ss_pred             eEEcccCcCc-cccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCcc
Q 047977          435 NVSFSNNSFS-GELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQF  491 (569)
Q Consensus       435 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  491 (569)
                      .++.++..++ ..+|..+  ..+++.|+|++|+++...+..|..+++|+.|+|++|++
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4455555443 1333222  12455555555555533334455555555555555544

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=91.04  E-value=0.28  Score=36.37  Aligned_cols=50  Identities=8%  Similarity=0.024  Sum_probs=36.8

Q ss_pred             CCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCC
Q 047977            4 SHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNN   54 (569)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   54 (569)
                      .|-.++.+-..+|..|..|+.+.+..+ ++.+...+|.+|.+|+.+.+...
T Consensus         4 ~g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            4 EGEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            355677777888888888888888775 44466777888888888887653

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=84.74  E-value=1.8  Score=31.87  Aligned_cols=49  Identities=16%  Similarity=0.109  Sum_probs=30.0

Q ss_pred             CCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCC
Q 047977           29 NNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGN   78 (569)
Q Consensus        29 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~   78 (569)
                      +.+++.+...+|.+|.+|+.+.+..+ ++.+-..+|.+|.+|+.+.+.+.
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            34455556667777777777777653 44344556667777776666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	569
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-21
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-13
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-12
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	9e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	9e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	6e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 92.8 bits (229), Expect = 6e-21
 Identities = 81/375 (21%), Positives = 134/375 (35%), Gaps = 31/375 (8%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
             L   N++  +      L  +T L  +    + SI   +  L+ L  ++  NN L    
Sbjct: 27  TVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDIT 82

Query: 61  PF-QLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119
           P   L+ L  +   +     +            +L +  +   +      +      +  
Sbjct: 83  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142

Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV---------SKLSNLTVL 170
            +            ++L       +   L +     +L  +          +KL+NL  L
Sbjct: 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 202

Query: 171 RLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIP 230
               N+ S   P  I  ++N+  + L  N        +L  L NL  LDL  N +++  P
Sbjct: 203 IATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 258

Query: 231 PELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELES 290
             L   T L+ L L  NQ+S      +S L+ L  L   +   +     + I N   L  
Sbjct: 259 --LSGLTKLTELKLGANQISN-----ISPLAGLTALTNLELNENQLEDISPISNLKNLTY 311

Query: 291 LQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTI 350
           L +  N+     P  +  LTKLQ LF   N  S    S +  LT++  L    NQ+S   
Sbjct: 312 LTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLT 367

Query: 351 PPTLWNLTNLLSLQL 365
           P  L NLT +  L L
Sbjct: 368 P--LANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 81.2 bits (199), Expect = 4e-17
 Identities = 75/383 (19%), Positives = 130/383 (33%), Gaps = 67/383 (17%)

Query: 62  FQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYL 121
           F  + L +     LG       D    +++  +T L      +       +    NLT +
Sbjct: 16  FTDTALAEKMKTVLGKT--NVTDTVSQTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQI 71

Query: 122 DLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPI 181
           + S N+L+ + P +  T L  +   N          +        L   ++        +
Sbjct: 72  NFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 182 PG---------DIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNS----- 227
                       I  +S +  +        G   + L  L NL  L+    + N      
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191

Query: 228 ------------------TIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLS 269
                             +    LG+ TNL  L+L  NQL      +L++L+ L +L L+
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 270 DNFLSGEISANLIGNWTELESLQIQNNSFMGNIP--------------------PEIGLL 309
           +N +S       +   T+L  L++  N      P                      I  L
Sbjct: 250 NNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306

Query: 310 TKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNN 369
             L YL LY N+ S   P  +  LT L++L  + N++S     +L NLTN+  L    N 
Sbjct: 307 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ 362

Query: 370 LSGTIPPEIGSMASLVAFDVNTN 392
           +S   P  + ++  +    +N  
Sbjct: 363 ISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 79.3 bits (194), Expect = 2e-16
 Identities = 59/224 (26%), Positives = 89/224 (39%), Gaps = 41/224 (18%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L  ++N IS   P  I T  NL  L LN N  +      +  L+ L  L + NN ++   
Sbjct: 202 LIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 257

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           P   S L K+  L LG N +   + S  + + +LT+L L  N+L    P   L    LTY
Sbjct: 258 PL--SGLTKLTELKLGANQI--SNISPLAGLTALTNLELNENQLEDISPISNLKN--LTY 311

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           L L  N +S + P    ++L KL+ L   +N+       +++ L+N+  L    N+ S  
Sbjct: 312 LTLYFNNISDISP---VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDL 366

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA 224
            P                          L  L  +  L L   A
Sbjct: 367 TP--------------------------LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.7 bits (190), Expect = 5e-16
 Identities = 77/392 (19%), Positives = 134/392 (34%), Gaps = 34/392 (8%)

Query: 19  LSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGN 78
           L+      L       ++     DL ++  L      +      +   L  +  ++   N
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSNN 76

Query: 79  FLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFT 138
            L   D +   N+  L  + +  N++    P   LT      L  +       +      
Sbjct: 77  QLT--DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 139 NLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFN 198
           N  +L    ++D      L+                  F   +     L +   L  L  
Sbjct: 135 NRLELSSNTISDISALSGLTSLQ------------QLSFGNQVTDLKPLANLTTLERLDI 182

Query: 199 NSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLS 258
           +S      S L +L NL+ L    N ++   P  +   TNL  L+L  NQL      +L+
Sbjct: 183 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLA 238

Query: 259 NLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLY 318
           +L+ L +L L++N +S       +   T+L  L++  N      P    L        L 
Sbjct: 239 SLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP----LAGLTALTNLE 291

Query: 319 RNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEI 378
            N       S I  L +L  L L  N +S   P  + +LT L  L    N +S      +
Sbjct: 292 LNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSL 347

Query: 379 GSMASLVAFDVNTNQLHGELP-ENISRLVNLN 409
            ++ ++       NQ+    P  N++R+  L 
Sbjct: 348 ANLTNINWLSAGHNQISDLTPLANLTRITQLG 379

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.2 bits (173), Expect = 8e-14
 Identities = 80/388 (20%), Positives = 132/388 (34%), Gaps = 39/388 (10%)

Query: 188 MSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMN 247
           ++      L   + T  +  +   L  +  L      + S     +    NL+ +  + N
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN 76

Query: 248 QLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTEL--------------ESLQI 293
           QL+   PL   NL++L ++ +++N ++       + N T L                  +
Sbjct: 77  QLTDITPLK--NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 294 QNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPT 353
                  N   +I  L+ L  L              +  LT+LE+LD+S N+   +    
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK--VSDISV 192

Query: 354 LWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSV 413
           L  LTNL SL    N +S   P  I  + +L    +N NQL       ++ L NL    +
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 248

Query: 414 FTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPA 473
             N  S   P         L  +    N  S   P    +     EL  N         +
Sbjct: 249 ANNQISNLAPL---SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED----IS 301

Query: 474 CMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQ 533
            + N  NL  +    N  +           +L  +  + N              N++ L 
Sbjct: 302 PISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLS 357

Query: 534 LDRNKISGGIPAELGNLTRLGVLSLDSN 561
              N+IS   P  L NLTR+  L L+  
Sbjct: 358 AGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.3 bits (124), Expect = 8e-08
 Identities = 52/357 (14%), Positives = 103/357 (28%), Gaps = 49/357 (13%)

Query: 242 LALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGN 301
           +   + + +    +S ++L ++  L      +    S + +     L  +   NN     
Sbjct: 25  MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQLTDI 81

Query: 302 IPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSL------EKLDLSGNQLSGTIPPTLW 355
            P  +  LTKL  + +  N  +   P       +       +  D+   +    +     
Sbjct: 82  TP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139

Query: 356 NLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPEN-------ISRLVNL 408
           +   +  +       S         +  L      T     ++  N       +++L NL
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199

Query: 409 NKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFT 468
                  N  S   P        +L  +S + N         L S   L +L +  N  +
Sbjct: 200 ESLIATNNQISDITPLG---ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 254

Query: 469 GSLPACMRNCSNLNRVRFDGNQFTGNI--------------------TRAFGVHPRLDFI 508
              P  +   + L  ++   NQ +                                L ++
Sbjct: 255 NLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 312

Query: 509 RLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565
            L  N+              L  L    NK+S    + L NLT +  LS   N+++ 
Sbjct: 313 TLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD 365

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 45/269 (16%), Positives = 84/269 (31%), Gaps = 24/269 (8%)

Query: 309 LTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFN 368
           L +     L + + +  +      L  +  L      +       +  L NL  +    N
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN 76

Query: 369 NLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGK 428
            L+   P  + ++  LV   +N NQ+    P      +               +      
Sbjct: 77  QLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 429 FSPSLINVSFSNNSFSGELPYELCS------------GFALEELTVNGNNFTGSLPACMR 476
               L + + S+ S    L                          ++ ++   S  + + 
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 477 NCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDR 536
             +NL  +    NQ +            LD + L+GN              NL++L L  
Sbjct: 195 KLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 250

Query: 537 NKISGGIPAELGNLTRLGVLSLDSNELTG 565
           N+IS   P  L  LT+L  L L +N+++ 
Sbjct: 251 NQISNLAP--LSGLTKLTELKLGANQISN 277

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.9 bits (211), Expect = 5e-19
 Identities = 59/260 (22%), Positives = 91/260 (35%), Gaps = 6/260 (2%)

Query: 186 GLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALA 245
            L  +  L++L NN  T         LKNL  L L  N ++   P        L  L L+
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 246 MNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPE 305
            NQL          L  L         +   +   L  N   +  L        G     
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGA 145

Query: 306 IGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQL 365
              + KL Y+ +   + +  IP  +    SL +L L GN+++     +L  L NL  L L
Sbjct: 146 FQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 366 FFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGD 425
            FN++S      + +   L    +N N+L    P  ++    +    +  NN S     D
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 426 FGKFSPSLINVSFSNNSFSG 445
           F     +    S+S  S   
Sbjct: 262 FCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.7 bits (208), Expect = 1e-18
 Identities = 48/264 (18%), Positives = 94/264 (35%), Gaps = 12/264 (4%)

Query: 307 GLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLF 366
            L      L L  N  +     +   L +L  L L  N++S   P     L  L  L L 
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 367 FNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDF 426
            N L         ++  L   +    ++   +   +++++ +   +      SG   G F
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIENGAF 146

Query: 427 GKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRF 486
                 L  +  ++ + +  +P  L    +L EL ++GN  T    A ++  +NL ++  
Sbjct: 147 QGM-KKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 487 DGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISG----- 541
             N  +     +    P L  + L+ N+ + ++     + + +  + L  N IS      
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLN-NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 542 -GIPAELGNLTRLGVLSLDSNELT 564
              P           +SL SN + 
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.9 bits (206), Expect = 2e-18
 Identities = 54/276 (19%), Positives = 105/276 (38%), Gaps = 14/276 (5%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           LDL +N I+         L NL  L L NN      P     L +L+ L +  N L    
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 95

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
                 L+++R  +     +    ++  + M  +  L     + +          + L+Y
Sbjct: 96  EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGMKKLSY 154

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
           + ++   ++  IP+ L  +   L  L+L  N+     + ++  L+NL  L L+ N  S  
Sbjct: 155 IRIADTNITT-IPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 210

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNS------TIPPELG 234
             G +    +++ + L NN    ++P  L   K +Q + L  N +++        P    
Sbjct: 211 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 269

Query: 235 LCTNLSFLALAMNQLSGG--LPLSLSNLSRLNELGL 268
              + S ++L  N +      P +   +     + L
Sbjct: 270 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.8 bits (190), Expect = 3e-16
 Identities = 54/269 (20%), Positives = 95/269 (35%), Gaps = 14/269 (5%)

Query: 12  IPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVR 71
           +P  +    +   LDL NN        +  +L  L  L + NN ++   P   + L K+ 
Sbjct: 25  VPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 72  YLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGL 131
            L L  N L+         +  L        ++     +  L    +  L  +  K SG+
Sbjct: 83  RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG-LNQMIVVELGTNPLKSSGI 141

Query: 132 IPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNI 191
                F  + KL Y+ + D       +       +LT L L  NK +      +  ++N+
Sbjct: 142 ENG-AFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 192 QLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSG 251
             + L  NS +     SL    +L+ L L  N L   +P  L     +  + L  N +S 
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256

Query: 252 ------GLPLSLSNLSRLNELGLSDNFLS 274
                   P   +  +  + + L  N + 
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 40/193 (20%), Positives = 69/193 (35%), Gaps = 7/193 (3%)

Query: 373 TIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPS 432
            +P ++         D+  N++      +   L NL+   +  N  S   PG F      
Sbjct: 24  KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL-VK 80

Query: 433 LINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFT 492
           L  +  S N    ELP ++        +  N             N   +  +  +  + +
Sbjct: 81  LERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 139

Query: 493 GNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTR 552
           G    AF    +L +IR++  +     +   G   +L+ L LD NKI+    A L  L  
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNN 196

Query: 553 LGVLSLDSNELTG 565
           L  L L  N ++ 
Sbjct: 197 LAKLGLSFNSISA 209

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 24/95 (25%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 472 PACMRNCS-NLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLS 530
           P C   C  +L  V+               + P    + L  N        D+   +NL 
Sbjct: 2   PVCPFRCQCHLRVVQCSDLGLE---KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLH 58

Query: 531 NLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565
            L L  NKIS   P     L +L  L L  N+L  
Sbjct: 59  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 93

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.6 bits (202), Expect = 4e-18
 Identities = 59/252 (23%), Positives = 94/252 (37%), Gaps = 6/252 (2%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGA- 59
           + L  N IS     +     NLT L L++N+      +    L+ L+ L + +N+   + 
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 60  FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119
            P     L ++  L L    L+      F  + +L +L L  N L            NLT
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156

Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSG 179
           +L L  N++S  +PER F  L  L+ L L  N+           L  L  L L  N  S 
Sbjct: 157 HLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215

Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNL 239
                +  +  +Q + L +N +      +      LQ      + +  ++P  L      
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRL---AGR 271

Query: 240 SFLALAMNQLSG 251
               LA N L G
Sbjct: 272 DLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (200), Expect = 8e-18
 Identities = 53/276 (19%), Positives = 83/276 (30%), Gaps = 9/276 (3%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQ-YLSVYNNSLNGA 59
                  +   +P  I        + L+ N       +       L       N      
Sbjct: 16  TSCPQQGLQA-VPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 60  FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119
                      +        L + D + F  +  L  L L    L    P        L 
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSG 179
           YL L  N L  L  +  F +LG L +L L  N+           L +L  L L  N+ + 
Sbjct: 133 YLYLQDNALQALPDD-TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNL 239
             P     +  +  + LF N+ +     +L  L+ LQ+L L  N           L   L
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWL 250

Query: 240 SFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSG 275
                + +++   LP  L+         L+ N L G
Sbjct: 251 QKFRGSSSEVPCSLPQRLAGRDLKR---LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (192), Expect = 8e-17
 Identities = 57/255 (22%), Positives = 84/255 (32%), Gaps = 5/255 (1%)

Query: 70  VRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLS 129
            + + L GN +     + F    +LT L L  N L     +       L  LDLS N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 130 GLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMS 189
             +    F  LG+L  L+L     Q         L+ L  L L  N            + 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 190 NIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQL 249
           N+  + L  N  +     +   L +L  L L  N +    P        L  L L  N L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 250 SGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLL 309
           S     +L+ L  L  L L+DN    +        W  L+  +  ++    ++P     L
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVCDC--RARPLWAWLQKFRGSSSEVPCSLPQR---L 268

Query: 310 TKLQYLFLYRNHFSG 324
                  L  N   G
Sbjct: 269 AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (185), Expect = 8e-16
 Identities = 61/261 (23%), Positives = 96/261 (36%), Gaps = 7/261 (2%)

Query: 186 GLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALA 245
           G+ +  Q + L  N  +    +S    +NL  L L  N L             L  L L+
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 246 MNQLSGGL-PLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPP 304
            N     + P +   L RL+ L L       E+   L      L+ L +Q+N+       
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 305 EIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQ 364
               L  L +LFL+ N  S         L SL++L L  N+++   P    +L  L++L 
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 365 LFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPG 424
           LF NNLS      +  + +L    +N N    +          L KF   ++    S+P 
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVPCSLPQ 266

Query: 425 DFGKFSPSLINVSFSNNSFSG 445
                   L  ++   N   G
Sbjct: 267 RLAGR--DLKRLAA--NDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (178), Expect = 6e-15
 Identities = 53/267 (19%), Positives = 87/267 (32%), Gaps = 7/267 (2%)

Query: 227 STIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWT 286
             +P  +        + L  N++S     S      L  L L  N L+   +A   G   
Sbjct: 24  QAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 287 ELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQL 346
             +     N       P     L +L  L L R       P     L +L+ L L  N L
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 347 SGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLV 406
                 T  +L NL  L L  N +S         + SL    ++ N++    P     L 
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 407 NLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNN 466
            L    +F NN S ++P +      +L  +  ++N +  +        + L++   + + 
Sbjct: 202 RLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW-LQKFRGSSSE 259

Query: 467 FTGSLPACMRNCSNLNRVRFDGNQFTG 493
              SLP  +             N   G
Sbjct: 260 VPCSLPQRLAGRDLKR---LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (176), Expect = 1e-14
 Identities = 48/265 (18%), Positives = 84/265 (31%), Gaps = 8/265 (3%)

Query: 302 IPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLL 361
           +P  I      Q +FL+ N  S    +      +L  L L  N L+         L  L 
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 362 SLQLFFNNLSGTIPP-EIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSG 420
            L L  N    ++ P     +  L    ++   L    P     L  L    +  N    
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 421 SIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSN 480
                F     +L ++    N  S           +L+ L ++ N      P   R+   
Sbjct: 144 LPDDTFRDL-GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 481 LNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS 540
           L  +    N  +   T A      L ++RL+ N ++ +          L   +   +++ 
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVP 261

Query: 541 GGIPAELGNLTRLGVLSLDSNELTG 565
             +P  L       +  L +N+L G
Sbjct: 262 CSLPQRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 6e-05
 Identities = 28/169 (16%), Positives = 44/169 (26%), Gaps = 2/169 (1%)

Query: 397 ELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFA 456
            +P  I       +  +  N  S      F       I    SN     +          
Sbjct: 25  AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 457 LEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFI 516
            +    +        PA       L+ +  D           F     L ++ L  N   
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 517 GEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565
                 + +  NL++L L  N+IS         L  L  L L  N +  
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 82.1 bits (201), Expect = 1e-17
 Identities = 63/259 (24%), Positives = 99/259 (38%), Gaps = 6/259 (2%)

Query: 1   LDLSHNNISG--PIPPAIGTLSNLTFLDLNNNL-FEGSIPSEMGDLSELQYLSVYNNSLN 57
           LDLS  N+    PIP ++  L  L FL +       G IP  +  L++L YL + + +++
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 58  GAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRN 117
           GA P  LS ++ +  LD   N L        S++P+L  ++   N ++   P    +   
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 118 LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKF 177
           L          + L  +   T                   +  +      T         
Sbjct: 175 LFTSMTISR--NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232

Query: 178 SGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCT 237
                G +GL  N+  ++L NN   G +P  L QLK L  L++  N L   I P+ G   
Sbjct: 233 LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQ 291

Query: 238 NLSFLALAMNQLSGGLPLS 256
                A A N+   G PL 
Sbjct: 292 RFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 79.4 bits (194), Expect = 6e-17
 Identities = 67/256 (26%), Positives = 105/256 (41%), Gaps = 6/256 (2%)

Query: 309 LTKLQYLFLYRNHFSG--PIPSEIGKLTSLEKLDLSGN-QLSGTIPPTLWNLTNLLSLQL 365
             ++  L L   +     PIPS +  L  L  L + G   L G IPP +  LT L  L +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 366 FFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGD 425
              N+SG IP  +  + +LV  D + N L G LP +IS L NL   +   N  SG+IP  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 426 FGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVR 485
           +G FS    +++ S N  +G++P    +            N      + +       +  
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD--LSRNMLEGDASVLFGSDKNTQKI 226

Query: 486 FDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPA 545
                         G+   L+ + L  N   G +     + + L +L +  N + G IP 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP- 285

Query: 546 ELGNLTRLGVLSLDSN 561
           + GNL R  V +  +N
Sbjct: 286 QGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.4 bits (181), Expect = 3e-15
 Identities = 60/262 (22%), Positives = 96/262 (36%), Gaps = 7/262 (2%)

Query: 117 NLTYLDLSLNKLSGLIP-ERLFTNLGKLEYLNLTDN-QFQGKLSPNVSKLSNLTVLRLAT 174
            +  LDLS   L    P      NL  L +L +       G + P ++KL+ L  L +  
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 175 NKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELG 234
              SG IP  +  +  +  ++   N+ +G +P S+  L NL  +    N ++  IP   G
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 235 LCTNLSFLALAM-NQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQI 293
             + L        N+L+G +P + +NL+        +               T+   L  
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 294 QNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPT 353
            + +F             L  L L  N   G +P  + +L  L  L++S N L G I P 
Sbjct: 231 NSLAFDLGKVGLS---KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQ 286

Query: 354 LWNLTNLLSLQLFFNNLSGTIP 375
             NL          N      P
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.1 bits (175), Expect = 2e-14
 Identities = 56/267 (20%), Positives = 93/267 (34%), Gaps = 6/267 (2%)

Query: 160 NVSKLSNLTVLRLATNKFSG--PIPGDIGLMSNIQLVELFNN-SFTGQIPSSLGQLKNLQ 216
             ++   +  L L+        PIP  +  +  +  + +    +  G IP ++ +L  L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 217 HLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGE 276
           +L +    ++  IP  L     L  L  + N LSG LP S+S+L  L  +    N +SG 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 277 ISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSL 336
           I  +         S+ I  N   G IPP    L                           
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN-- 222

Query: 337 EKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHG 396
            +               +    NL  L L  N + GT+P  +  +  L + +V+ N L G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 397 ELPENISRLVNLNKFSVFTNNFSGSIP 423
           E+P+    L   +  +   N      P
Sbjct: 283 EIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 70.9 bits (172), Expect = 4e-14
 Identities = 53/242 (21%), Positives = 80/242 (33%), Gaps = 5/242 (2%)

Query: 328 SEIGKLTSLEKLDLSGNQLSG--TIPPTLWNLTNLLSLQLFFN-NLSGTIPPEIGSMASL 384
               +   +  LDLSG  L     IP +L NL  L  L +    NL G IPP I  +  L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 385 VAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFS 444
               +    + G +P+ +S++  L       N  SG++P         +    F  N  S
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT-FDGNRIS 162

Query: 445 GELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPR 504
           G +P    S   L        N            +                        +
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTG-KIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 505 LDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT 564
                    + +       G  +NL+ L L  N+I G +P  L  L  L  L++  N L 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 565 GK 566
           G+
Sbjct: 282 GE 283

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 69.0 bits (167), Expect = 2e-13
 Identities = 59/257 (22%), Positives = 96/257 (37%), Gaps = 5/257 (1%)

Query: 237 TNLSFLALAMNQLSGGLPL--SLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQ 294
             ++ L L+   L    P+  SL+NL  LN L +             I   T+L  L I 
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 295 NNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTL 354
           + +  G IP  +  +  L  L    N  SG +P  I  L +L  +   GN++SG IP + 
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 355 WNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVF 414
            + + L +      N          + A+L    V+ ++   E   ++    + N   + 
Sbjct: 170 GSFSKLFTSMTISRN--RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 415 TNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPAC 474
               S +        S +L  +   NN   G LP  L     L  L V+ NN  G +P  
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

Query: 475 MRNCSNLNRVRFDGNQF 491
             N    +   +  N+ 
Sbjct: 288 -GNLQRFDVSAYANNKC 303

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (156), Expect = 4e-12
 Identities = 46/272 (16%), Positives = 93/272 (34%), Gaps = 16/272 (5%)

Query: 119 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFS 178
             LDL+   L   +  RL +    +       +     L+ + S    +  + L+ +   
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ--GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIE 59

Query: 179 G-PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPE----- 232
              + G +   S +Q + L     +  I ++L +  NL  L+L   +  S    +     
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 233 ---LGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELE 289
              L               +   +      +++LN  G   N    ++S  +      + 
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 290 SLQIQNNSFMGNIPPEIGLLTKLQYLFLYR-NHFSGPIPSEIGKLTSLEKLDLSGNQLSG 348
                +     +   E   L  LQ+L L R          E+G++ +L+ L + G    G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 349 TIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGS 380
           T+      L +L   Q+  ++ +    P IG+
Sbjct: 240 TLQLLKEALPHL---QINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 3e-09
 Identities = 34/278 (12%), Positives = 86/278 (30%), Gaps = 15/278 (5%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNG-A 59
           LDL+  N+   +   +     +       +  +  +         +Q++ + N+ +    
Sbjct: 5   LDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 60  FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL--CYNELTLEFPSFILTCRN 117
               LS   K++ L L G  L  P  +  +   +L  L+L  C         + + +C  
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 118 LTYLDL------SLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLR 171
           L  L+L      +   +   +     T           + Q     +      + + +  
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 172 LATNKFSGPIPGDIGLMSNIQLVELFN-NSFTGQIPSSLGQLKNLQHLDLRMNALNSTIP 230
             +         +   ++ +Q + L        +    LG++  L+ L +     + T+ 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 231 PELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGL 268
                  +L    +  +  +     ++ N       G+
Sbjct: 243 LLKEALPHLQ---INCSHFTTIARPTIGNKKNQEIWGI 277

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 49/301 (16%), Positives = 92/301 (30%), Gaps = 30/301 (9%)

Query: 73  LDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLI 132
           LDL G  L  PD +       +       + +         +   + ++DLS + +    
Sbjct: 5   LDLTGKNL-HPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST 62

Query: 133 PERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQ 192
              + +   KL+ L+L   +    +   ++K SNL  L                 +S   
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN----------------LSGCS 106

Query: 193 LVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGG 252
               F         S L +L      D     +   +       T L+      N     
Sbjct: 107 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 166

Query: 253 LPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFM-GNIPPEIGLLTK 311
           L   +     L  L LSD+ +              L+ L +     +      E+G +  
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 312 LQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTL--------WNLTNLLSL 363
           L+ L ++     G +        +L  L ++ +  +    PT+        W +   L+L
Sbjct: 227 LKTLQVFGIVPDGTLQLLK---EALPHLQINCSHFTTIARPTIGNKKNQEIWGIKCRLTL 283

Query: 364 Q 364
           Q
Sbjct: 284 Q 284

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 9e-11
 Identities = 42/177 (23%), Positives = 61/177 (34%), Gaps = 5/177 (2%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L LS N +       +   + LT L+L+    E +     G L  L  L + +N L    
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDR--AELTKLQVDGTLPVLGTLDLSHNQLQSLP 93

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
                 L  +  LD+  N L +        +  L  L L  NEL    P  +     L  
Sbjct: 94  LLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKF 177
           L L+ N L+ L    L   L  L+ L L +N     +         L    L  N +
Sbjct: 153 LSLANNNLTELPAG-LLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 2e-09
 Identities = 43/210 (20%), Positives = 73/210 (34%), Gaps = 8/210 (3%)

Query: 161 VSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDL 220
           VSK+++   +       +  +P D+    +  ++ L  N       ++L     L  L+L
Sbjct: 6   VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 221 RMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISAN 280
                  T     G    L  L L+ NQL     L  +  +        +   S  +   
Sbjct: 63  DRA--ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS--LPLG 118

Query: 281 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLD 340
            +    EL+ L ++ N      P  +    KL+ L L  N+ +      +  L +L+ L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 341 LSGNQLSGTIPPTLWNLTNLLSLQLFFNNL 370
           L  N L  TIP   +    L    L  N  
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 1e-08
 Identities = 48/211 (22%), Positives = 75/211 (35%), Gaps = 8/211 (3%)

Query: 39  EMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLS 98
           E+  ++    ++    +L  A P  L   +    L L  N L T   +       LT L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 99  LCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLS 158
           L   ELT       L       L  +  +   L+ + L         L+++ N+      
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL----TVLDVSFNRLTSLPL 117

Query: 159 PNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHL 218
             +  L  L  L L  N+     PG +     ++ + L NN+ T      L  L+NL  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 219 DLRMNALNSTIPPELGLCTNLSFLALAMNQL 249
            L+ N+   TIP        L F  L  N  
Sbjct: 178 LLQENS-LYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 43/191 (22%), Positives = 65/191 (34%), Gaps = 7/191 (3%)

Query: 326 IPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLV 385
           +P ++ K      L LS N L      TL   T L  L L  +    T     G++  L 
Sbjct: 25  LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQVDGTLPVLG 80

Query: 386 AFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG 445
             D++ NQL        +           + N   S+P    +    L  +    N    
Sbjct: 81  TLDLSHNQLQSLPLLGQTL--PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 446 ELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRL 505
             P  L     LE+L++  NN T      +    NL+ +    N     I + F     L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

Query: 506 DFIRLSGNHFI 516
            F  L GN ++
Sbjct: 198 PFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 37/211 (17%), Positives = 68/211 (32%), Gaps = 8/211 (3%)

Query: 16  IGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDL 75
           +  +++   ++ +      ++P ++    +   L +  N L       L    ++  L+L
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 76  GGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPER 135
                E         +P L  L L +N+L                        S  +P  
Sbjct: 63  DRA--ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS--LPLG 118

Query: 136 LFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVE 195
               LG+L+ L L  N+ +      ++    L  L LA N  +    G +  + N+  + 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 196 LFNNSFTGQIPSSLGQLKNLQHLDLRMNALN 226
           L  NS    IP        L    L  N   
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 5e-08
 Identities = 35/210 (16%), Positives = 64/210 (30%), Gaps = 8/210 (3%)

Query: 282 IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDL 341
           +        +     +    +PP++        L L  N       + +   T L +L+L
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 342 SGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPEN 401
              +   T       L  L +L L  N L           A  +     +      LP  
Sbjct: 63  DRAE--LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPA--LTVLDVSFNRLTSLPLG 118

Query: 402 ISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELT 461
             R +   +      N   ++P      +P L  +S +NN+ +      L     L+ L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 462 VNGNNFTGSLPACMRNCSNLNRVRFDGNQF 491
           +  N+   ++P        L      GN +
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 37/233 (15%), Positives = 61/233 (26%), Gaps = 32/233 (13%)

Query: 329 EIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFD 388
           E+ K+ S  +++     L+  +PP L    +   L L  N L       +     L   +
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 389 VNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELP 448
           ++  +L     +    L  L    +  N             +     +  S N  +    
Sbjct: 62  LDRAELTK--LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL--TVLDVSFNRLTSLPL 117

Query: 449 YELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFI 508
             L     L+EL + GN      P  +     L ++    N  T            LD +
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 509 RLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSN 561
            L  N                             IP        L    L  N
Sbjct: 178 LLQENSLYT-------------------------IPKGFFGSHLLPFAFLHGN 205

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 3e-07
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L L+H +++  +   +  L  +T LDL++N      P+ +  L  L+ L   +N+L    
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD 59

Query: 61  PFQLSNLRKVRYLDLGGNFLET-PDWSKFSNMPSLTHLSLCYNELT 105
                NL +++ L L  N L+         + P L  L+L  N L 
Sbjct: 60  GVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 5e-06
 Identities = 24/110 (21%), Positives = 36/110 (32%), Gaps = 5/110 (4%)

Query: 47  QYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTL 106
           + L + +  L       L  L  V +LDL  N L        + +  L  L    N L  
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALE- 56

Query: 107 EFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGK 156
                +     L  L L  N+L      +   +  +L  LNL  N    +
Sbjct: 57  -NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 31/128 (24%), Positives = 47/128 (36%), Gaps = 13/128 (10%)

Query: 242 LALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGN 301
           L LA   L+      L  L  +  L LS N L     A  +     LE LQ  +N+    
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALE-- 56

Query: 302 IPPEIGLLTKLQYLFLYRNHF-SGPIPSEIGKLTSLEKLDLSGNQLSG------TIPPTL 354
               +  L +LQ L L  N          +     L  L+L GN L         +   L
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 355 WNLTNLLS 362
            +++++L+
Sbjct: 117 PSVSSILT 124

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 7/107 (6%)

Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSG 179
            L L+   L+ L        L  + +L+L+ N+ +    P ++ L  L VL+ + N    
Sbjct: 2   VLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALEN 57

Query: 180 PIPGDIGLMSNIQLVELFNNSFTG-QIPSSLGQLKNLQHLDLRMNAL 225
                   +  +Q + L NN          L     L  L+L+ N+L
Sbjct: 58  VDGVAN--LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 6/108 (5%)

Query: 145 YLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQ 204
            L+L           ++ +L  +T L L+ N+     P    L +   L  L  +    +
Sbjct: 2   VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA---LAALRCLEVLQASDNALE 56

Query: 205 IPSSLGQLKNLQHLDLRMNALNSTIPPE-LGLCTNLSFLALAMNQLSG 251
               +  L  LQ L L  N L  +   + L  C  L  L L  N L  
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 192 QLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSG 251
           +++ L +   T  +   L QL  + HLDL  N L +  P    L        L  +  + 
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP---ALAALRCLEVLQASDNAL 55

Query: 252 GLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTK 311
                ++NL RL EL L +N L    +   + +   L  L +Q NS           L +
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAE 114

Query: 312 L 312
           +
Sbjct: 115 M 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 5/112 (4%)

Query: 339 LDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL 398
           L L+   L  T+   L  L  +  L L  N L   +PP + ++  L    +  +    E 
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCL--EVLQASDNALEN 57

Query: 399 PENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYE 450
            + ++ L  L +  +  N    S         P L+ ++   NS   E   +
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 109

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 7e-07
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 70  VRYLDLGGNFLETPDWSK-FSNMPSLTHLSLCYNELTLE----FPSFILTCRNLTYLDLS 124
           ++ LD+    L    W++    +     + L    LT        S +     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 125 LNKLSG----LIPERLFTNLGKLEYLNLTDNQFQ 154
            N+L       + + L T   K++ L+L +    
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 4/74 (5%)

Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGK----LSPNVSKLSNLTVLRL 172
           ++  LD+   +LS      L   L + + + L D          +S  +     L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 173 ATNKFSGPIPGDIG 186
            +N+        + 
Sbjct: 63  RSNELGDVGVHCVL 76

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 12/102 (11%)

Query: 81  ETPDWSKFSNMPSLTHLSLCYNELTLE----FPSFILTCRNLTYLDLSLNKLSG----LI 132
                        L  L L   +++        + +L   +L  LDLS N L       +
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 133 PERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLS----NLTVL 170
            E +      LE L L D  +  ++   +  L     +L V+
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 5e-06
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 287 ELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNHFSG----PIPSEIGKLTSLEKLDL 341
           +++SL IQ          E+  LL + Q + L     +      I S +    +L +L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 342 SGNQLSGTIPPTLWNLTNLLSLQLFFNNLSG 372
             N+L       +       S ++   +L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 3e-05
 Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 263 LNELGLSDNFLSGEISANLIGNWTELESLQIQNNSF----MGNIPPEIGLLTKLQYLFLY 318
           +  L +    LS    A L+    + + +++ +         +I   + +   L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 319 RNHFSGPIPSEIGKL-----TSLEKLDLSGNQ 345
            N         + +        ++KL L    
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 3e-05
 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 9/81 (11%)

Query: 310 TKLQYLFLYRNHFSG----PIPSEIGKLTSLEKLDLSGNQLSGTIPPTL-----WNLTNL 360
           + L+ L+L     S      + + +    SL +LDLS N L       L          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 361 LSLQLFFNNLSGTIPPEIGSM 381
             L L+    S  +   + ++
Sbjct: 429 EQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 5e-05
 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 9/78 (11%)

Query: 1   LDLSHNNISG----PIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGD-----LSELQYLSV 51
           L L+  ++S      +   +    +L  LDL+NN    +   ++ +        L+ L +
Sbjct: 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 433

Query: 52  YNNSLNGAFPFQLSNLRK 69
           Y+   +     +L  L K
Sbjct: 434 YDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 9e-05
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 10/120 (8%)

Query: 190 NIQLVELFNNSFT-GQIPSSLGQLKNLQHLDLRMNALN----STIPPELGLCTNLSFLAL 244
           +IQ +++     +  +    L  L+  Q + L    L       I   L +   L+ L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 245 AMNQLSGGLPLSL-----SNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFM 299
             N+L       +     +   ++ +L L +  L+G     L      L +LQ  + S  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 5/75 (6%)

Query: 312 LQYLFLYRNHFSGPIPSEI-GKLTSLEKLDLSGNQLSG----TIPPTLWNLTNLLSLQLF 366
           +Q L +     S    +E+   L   + + L    L+      I   L     L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 367 FNNLSGTIPPEIGSM 381
            N L       +   
Sbjct: 64  SNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 10/93 (10%)

Query: 166 NLTVLRLATNKFS-GPIPGDIGLMSNIQLVELFNNSFTGQ----IPSSLGQLKNLQHLDL 220
           ++  L +   + S       + L+   Q+V L +   T      I S+L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 221 RMNALNSTIPPELG-----LCTNLSFLALAMNQ 248
           R N L       +          +  L+L    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 8/84 (9%)

Query: 236 CTNLSFLALAMNQLSG----GLPLSLSNLSRLNELGLSDNFLSGE----ISANLIGNWTE 287
            + L  L LA   +S      L  +L     L EL LS+N L       +  ++      
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 288 LESLQIQNNSFMGNIPPEIGLLTK 311
           LE L + +  +   +   +  L K
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 182 PGDIGLMSNIQLVELFNNSFTGQ----IPSSLGQLKNLQHLDLRMNALNSTIPPELG--- 234
            G     S ++++ L +   +      + ++L    +L+ LDL  N L      +L    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 235 --LCTNLSFLALAMNQLSGGLPLSLSNLSRLN 264
                 L  L L     S  +   L  L +  
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 213 KNLQHLDLRMNALNST----IPPELGLCTNLSFLALAMNQLSGGLPLSLS-----NLSRL 263
             L+ L L    ++ +    +   L    +L  L L+ N L     L L          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 264 NELGLSDNFLSGEISANLIGNWTELESLQI 293
            +L L D + S E+   L     +  SL++
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 10/93 (10%)

Query: 137 FTNLGKLEYLNLTDNQFQGK----LSPNVSKLSNLTVLRLATNKFSGPIPGDIG-----L 187
                 L  L L D          L+  +    +L  L L+ N         +       
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 188 MSNIQLVELFNNSFTGQIPSSLGQL-KNLQHLD 219
              ++ + L++  ++ ++   L  L K+   L 
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 10/92 (10%)

Query: 21  NLTFLDL-NNNLFEGSIPSEMGDLSELQYLSVYNNSLNG----AFPFQLSNLRKVRYLDL 75
           ++  LD+    L +      +  L + Q + + +  L           L     +  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 76  GGNFLETPDWSKF-----SNMPSLTHLSLCYN 102
             N L             +    +  LSL   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 78  NFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLF 137
           N       S     PSL  L++  N+L  E P+       L  L  S N L+ +      
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLAEVPEL--- 322

Query: 138 TNLGKLEYLNLTDNQFQGKLSPNVSKLSNL 167
                L+ L++  N  + +       + +L
Sbjct: 323 --PQNLKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 5e-06
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 316 FLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIP 375
             Y N  S  I S      SLE+L++S N+L   +P     L     L   FN+L+  +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVP 320

Query: 376 PEIGSMASLVAFDVNTNQLHGELPENISRLVNLN 409
               ++  L    V  N L  E P+    + +L 
Sbjct: 321 ELPQNLKQL---HVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 9/77 (11%)

Query: 284 NWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSG 343
               LE L + NN  +  +P       +L+ L    NH +  +P       +L++L +  
Sbjct: 282 LPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLAE-VPELPQ---NLKQLHVEY 333

Query: 344 NQLSGTIPPTLWNLTNL 360
           N L    P    ++ +L
Sbjct: 334 NPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 10/109 (9%)

Query: 85  WSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLE 144
            + FS +  L       N  + E  S      +L  L++S NKL  L          +LE
Sbjct: 253 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL-----PPRLE 307

Query: 145 YLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQL 193
            L  + N    ++        NL  L +  N      P     + ++++
Sbjct: 308 RLIASFNHLA-EVPEL---PQNLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 10/70 (14%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNG-- 58
           L++S+N +   +P        L  L  + N     +P        L+ L V  N L    
Sbjct: 289 LNVSNNKLIE-LPALPP---RLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLREFP 340

Query: 59  AFPFQLSNLR 68
             P  + +LR
Sbjct: 341 DIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 48/323 (14%), Positives = 86/323 (26%), Gaps = 25/323 (7%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           L+L++  +S  +P       +L  L  + N     +P     L  L   +    +L+   
Sbjct: 43  LELNNLGLSS-LPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLP 97

Query: 61  P--FQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNL 118
           P    L                         N        L  +   +   +  L     
Sbjct: 98  PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE 157

Query: 119 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFS 178
                 L  +              L   ++       +  P +  L  LT +    N   
Sbjct: 158 LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK 217

Query: 179 GPIPGDIGLMSNIQLVELFNN--------SFTGQIPSSLGQLKNLQHLDLRMNALNSTIP 230
                   L +         +        +F     +    L  L      +NA ++ I 
Sbjct: 218 TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR 277

Query: 231 PELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELES 290
               L  +L  L ++ N+L   LP     L RL     S N L+      +      L+ 
Sbjct: 278 SLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLA-----EVPELPQNLKQ 328

Query: 291 LQIQNNSFMGNIPPEIGLLTKLQ 313
           L ++ N      P     +  L+
Sbjct: 329 LHVEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 14/98 (14%)

Query: 3   LSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPF 62
              N  S  I        +L  L+++NN     +P+       L+ L    N L    P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPE 321

Query: 63  QLSNLRKVRYLDLGGNFLET-PDWSKFSNMPSLTHLSL 99
              NL   + L +  N L   PD        S+  L +
Sbjct: 322 LPQNL---KQLHVEYNPLREFPDI-----PESVEDLRM 351

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 3e-06
 Identities = 28/215 (13%), Positives = 55/215 (25%), Gaps = 6/215 (2%)

Query: 165 SNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA 224
            N   LR    K      G      +++ +E+  N     I + +       H      A
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 225 LNSTIPPELGLCTNLSFLALAMNQL---SGGLPLSLSNLSRLNELGLSDNFLSGEISANL 281
            N             +   L ++            + +L ++      +  +      + 
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 282 IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDL 341
           +G   E   L +  N                +      N+            +    LD+
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208

Query: 342 SGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPP 376
           S  ++       L NL  L +      NL   +P 
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARST--YNLK-KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 8e-05
 Identities = 23/234 (9%), Positives = 51/234 (21%), Gaps = 9/234 (3%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGA- 59
                + ++  IP  +    N   L                   +L+ + +  N +    
Sbjct: 13  FLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 60  --FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRN 117
               F          ++   N L     +  +       L        L     I + + 
Sbjct: 70  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129

Query: 118 LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKF 177
           +         +  +          +   L L  N  Q   +   +      +     N  
Sbjct: 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189

Query: 178 SGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPP 231
                      S   ++++            L  LK L+            +P 
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---LKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 26/231 (11%), Positives = 58/231 (25%), Gaps = 6/231 (2%)

Query: 335 SLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQL 394
           S        ++++  IP  L    N + L+     L             L   +++ N +
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 395 HGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSG 454
              +  ++   +            +          +   +     +N+    LP      
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 455 FALEELTVNGNNFTGSLPACMRNCS---NLNRVRFDGNQFTGNITRAFGVHPRLDFIRLS 511
              + L    +N                    +  + N        AF      +     
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 512 GNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNE 562
            N+     +  +        L + R +I       L NL +L   S  + +
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 9e-06
 Identities = 38/194 (19%), Positives = 66/194 (34%), Gaps = 23/194 (11%)

Query: 188 MSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMN 247
            +      L   S T  +  +  +L ++  +    + + S     +    N++ L L  N
Sbjct: 23  FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78

Query: 248 QLSGGLPLSLSNLSRLNELGLSDNFLS---------------GEISANLIGNWTELESLQ 292
           +L+   PL+         L  +                        +++ G     +   
Sbjct: 79  KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138

Query: 293 IQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPP 352
           +   +        +  LTKL  L L  N  S  +P  +  LT L+ L LS N +S     
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LR 194

Query: 353 TLWNLTNLLSLQLF 366
            L  L NL  L+LF
Sbjct: 195 ALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 33/206 (16%), Positives = 66/206 (32%), Gaps = 17/206 (8%)

Query: 138 TNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELF 197
               +    NL        ++   ++L+++  +    +         I  + N+  + L 
Sbjct: 21  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76

Query: 198 NNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSL 257
            N  T         L NL++L       N                    +     +   L
Sbjct: 77  GNKLTDIK-----PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-GL 130

Query: 258 SNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFL 317
            +L +L  L L +N ++     + +          +       +    +  LTKLQ L+L
Sbjct: 131 VHLPQLESLYLGNNKITDITVLSRLTKLDT-----LSLEDNQISDIVPLAGLTKLQNLYL 185

Query: 318 YRNHFSGPIPSEIGKLTSLEKLDLSG 343
            +NH S      +  L +L+ L+L  
Sbjct: 186 SKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 15/172 (8%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           +  ++++I       I  L N+T L LN N         +  L+ L+ L       N   
Sbjct: 51  IIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTD-----IKPLANLKNLGWLFLDENKVK 103

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
                   K        +   +            +          +   S +     L+ 
Sbjct: 104 DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL 163

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRL 172
            D  ++ +           L KL+ L L+ N         ++ L NL VL L
Sbjct: 164 EDNQISDIVP------LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 207

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 33/189 (17%), Positives = 60/189 (31%), Gaps = 19/189 (10%)

Query: 188 MSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMN 247
           ++      L   + T  +  +   L  +  L      + S     +    NL+ +  + N
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN 72

Query: 248 QLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIG 307
           QL+   PL          +  +       ++         L + QI +   + N+     
Sbjct: 73  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 132

Query: 308 LLTKLQYLFLYRNHFSGPI-------------PSEIGKLTSLEKLDLSGNQLSGTIPPTL 354
           L      +                           +  LT+LE+LD+S N++S      L
Sbjct: 133 LELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVL 190

Query: 355 WNLTNLLSL 363
             LTNL SL
Sbjct: 191 AKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 35/186 (18%), Positives = 65/186 (34%), Gaps = 25/186 (13%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
             L   N++  +      L  +T L  +    + SI   +  L+ L  ++  NN L    
Sbjct: 23  TVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDIT 78

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTH----------------LSLCYNEL 104
           P +         ++       TP  +  +                         L  +  
Sbjct: 79  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 138

Query: 105 TLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKL 164
           T+   S +    +L  L+ S N+++ L P     NL  LE L+++ N+        ++KL
Sbjct: 139 TISDISALSGLTSLQQLNFSSNQVTDLKP---LANLTTLERLDISSNKVSD--ISVLAKL 193

Query: 165 SNLTVL 170
           +NL  L
Sbjct: 194 TNLESL 199

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 23/128 (17%), Positives = 31/128 (24%), Gaps = 7/128 (5%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           LDL    I   I     TL     +D ++N            L  L+ L V NN +    
Sbjct: 23  LDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLLVNNNRICRIG 79

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSF----ILTCR 116
                 L  +  L L  N L                              +    I    
Sbjct: 80  EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP 139

Query: 117 NLTYLDLS 124
            +  LD  
Sbjct: 140 QVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 9e-05
 Identities = 23/140 (16%), Positives = 52/140 (37%), Gaps = 8/140 (5%)

Query: 86  SKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY 145
           ++++N      L L   ++     +   T      +D S N++  L     F  L +L+ 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG---FPLLRRLKT 67

Query: 146 LNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSG-PIPGDIGLMSNIQLVELFNNSFTGQ 204
           L + +N+           L +LT L L  N          +  + ++  + +  N  T +
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 205 I---PSSLGQLKNLQHLDLR 221
                  + ++  ++ LD +
Sbjct: 128 KHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 3/87 (3%)

Query: 309 LTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFN 368
             + + L L        I +    L   + +D S N++          L  L +L +  N
Sbjct: 17  AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNN 73

Query: 369 NLSGTIPPEIGSMASLVAFDVNTNQLH 395
            +         ++  L    +  N L 
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLV 100

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 33/230 (14%), Positives = 62/230 (26%), Gaps = 20/230 (8%)

Query: 19  LSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGN 78
           L+N   +    +    ++     DL  +  LS +   +      Q   L  +  L+L  N
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDN 73

Query: 79  FLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFT 138
            +      K     +   LS    +                      +         L  
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 139 NLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFN 198
               L  +              +S                      +  +S +  ++  +
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSI-----------GNAQVSDLTPLANLSKLTTLKADD 182

Query: 199 NSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQ 248
           N  +   P  L  L NL  + L+ N ++   P  L   +NL  + L  NQ
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 37/215 (17%), Positives = 66/215 (30%), Gaps = 21/215 (9%)

Query: 164 LSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 223
           L+N   +    +  +  +      +  I  +  F    T      +  L NL  L+L+ N
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN 73

Query: 224 ALNSTIPPE---LGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISAN 280
            +    P +         LS   L       GL    +      ++              
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 281 LIGNWTELESLQIQNNSFMGNI----------PPEIGLLTKLQYLFLYRNHFSGPIPSEI 330
           L  +  ++ ++                        +  L+KL  L    N  S   P  +
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 331 GKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQL 365
             L +L ++ L  NQ+S   P  L N +NL  + L
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 30/226 (13%), Positives = 71/226 (31%), Gaps = 19/226 (8%)

Query: 333 LTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTN 392
           L +  K+    + ++ T+  T  +L  + +L  F   ++      +  + +L+  ++  N
Sbjct: 18  LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN 73

Query: 393 QLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELC 452
           Q+      +++ L NL K +    + +            S+  +  ++   +        
Sbjct: 74  QIT-----DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD------V 122

Query: 453 SGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSG 512
           +  A              +          N           +         +L  ++   
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 513 NHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSL 558
           N              NL  + L  N+IS   P  L N + L +++L
Sbjct: 183 NKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 37/221 (16%), Positives = 62/221 (28%), Gaps = 19/221 (8%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
           +    +N++  +  A   L  +T L              +  L+ L  L + +N +    
Sbjct: 24  IAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA 79

Query: 61  PFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTY 120
           P +         L        +      S        +   +   L   S     + L  
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN---LQVLYL 136

Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
               +  +S L        L                     + LS LT L+   NK S  
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPL--------ANLSKLTTLKADDNKISDI 188

Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 221
            P  +  + N+  V L NN  +   P  L    NL  + L 
Sbjct: 189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 8e-05
 Identities = 38/219 (17%), Positives = 74/219 (33%), Gaps = 22/219 (10%)

Query: 188 MSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMN 247
           ++N   +    ++ T  +  +   L  +  L      + +     +    NL  L L  N
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN 73

Query: 248 QLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIG 307
           Q++   PL         EL  +       I+        +L S QI + + +  +     
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 308 LLTKLQYLFLYRN-------------HFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTL 354
           L   L  +                  +      + +  L+ L  L    N++S   P  L
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 355 WNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQ 393
            +L NL+ + L  N +S   P  + + ++L    +  NQ
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 37/228 (16%), Positives = 64/228 (28%), Gaps = 19/228 (8%)

Query: 43  LSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYN 102
           L+    ++   +++        ++L  +  L   G  +          + +L  L L  N
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT--TIEGVQYLNNLIGLELKDN 73

Query: 103 ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVS 162
           ++T   P   LT                 +      N+  +  L                
Sbjct: 74  QITDLAPLKNLTKITELE-----------LSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 163 KLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRM 222
                             I     L     L  L   +      + L  L  L  L    
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 223 NALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSD 270
           N ++   P  L    NL  + L  NQ+S   P  L+N S L  + L++
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 45/234 (19%), Positives = 77/234 (32%), Gaps = 20/234 (8%)

Query: 62  FQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYL 121
           F    L     +  G + +   D    +++  +T LS     +T      +    NL  L
Sbjct: 13  FPDPALANAIKIAAGKSNVT--DTVTQADLDGITTLSAFGTGVT--TIEGVQYLNNLIGL 68

Query: 122 DLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPI 181
           +L  N+          T+L  L+ L                            +  S  I
Sbjct: 69  ELKDNQ---------ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI 119

Query: 182 PGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSF 241
                L     L  L+ +       S L  L NLQ+L +       +    L   + L+ 
Sbjct: 120 TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA--QVSDLTPLANLSKLTT 177

Query: 242 LALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQN 295
           L    N++S   PL+  +L  L E+ L +N +S       + N + L  + + N
Sbjct: 178 LKADDNKISDISPLA--SLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTN 226

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 50/341 (14%), Positives = 92/341 (26%), Gaps = 39/341 (11%)

Query: 93  SLTHLSLCYNELTLE----FPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGK---LEY 145
           S+   SL  + +T E      + +L   ++  + LS N +       L  N+     LE 
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 146 LNLTDNQ----------FQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVE 195
              +D                L   + K   L  +RL+ N F       +    +     
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 196 LFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPL 255
                    +    G        +L +N      PP   +    + L     +       
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 256 SLSNLSRLNELGLSDNFLSGEISA-----NLIGNWTELESLQIQNNSFMGNIPPEIGLLT 310
           S   L  +  +         E                        +     +   +    
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 311 KLQYLFLYRNHFSGPIPSEIG------KLTSLEKLDLSGNQLSGTIPPTLW-----NLTN 359
            L+ L L     S    + +       +   L+ L L  N++      TL       + +
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 360 LLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPE 400
           LL L+L  N  S      +  +  +      + +  GEL E
Sbjct: 304 LLFLELNGNRFSE-EDDVVDEIREVF-----STRGRGELDE 338

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 11/97 (11%)

Query: 85  WSKFSNMPSLTHLSLCYNELTLEFPSFILTC------RNLTYLDLSLNKLSG----LIPE 134
                + P+L  L L    L+    + ++          L  L L  N++       +  
Sbjct: 236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 295

Query: 135 RLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLR 171
            +   +  L +L L  N+F  +    V ++  +   R
Sbjct: 296 VIDEKMPDLLFLELNGNRF-SEEDDVVDEIREVFSTR 331

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 37/348 (10%), Positives = 88/348 (25%), Gaps = 25/348 (7%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEG----SIPSEMGDLSELQYLSVYNNSL 56
             ++  +    +   +    ++  + L+ N         +   +    +L+     +   
Sbjct: 13  DAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71

Query: 57  NGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCR 116
                     LR +    L    L T   S  +  P+     + +           L   
Sbjct: 72  GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 131

Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNK 176
            L     +    +                 ++   + + +              RL    
Sbjct: 132 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 191

Query: 177 FSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLC 236
                      + ++ L  L        +        +L    L +   +     ELGL 
Sbjct: 192 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251

Query: 237 TNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGE----ISANLIGNWTELESLQ 292
                 A     +      S      L  L L  N +  +    +   +     +L  L+
Sbjct: 252 DC-LLSARGAAAVVD--AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 293 IQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLD 340
           +  N        E  ++ +++ +F  R           G+L  L+ ++
Sbjct: 309 LNGN----RFSEEDDVVDEIREVFSTRGR---------GELDELDDME 343

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 0.004
 Identities = 43/307 (14%), Positives = 80/307 (26%), Gaps = 30/307 (9%)

Query: 86  SKFSNMPSLTHLSLCYNELTLE----FPSFILTCRNLTYLDLSLNKLSGLIPE------- 134
           +      S+  + L  N +  E        I + ++L   + S      +  E       
Sbjct: 25  AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 84

Query: 135 --RLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQ 192
             +      KL  + L+DN F       +    +           +  +    G      
Sbjct: 85  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 144

Query: 193 LVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGG 252
           L EL  N      P     +     L+       +       L   +  +   +      
Sbjct: 145 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE 204

Query: 253 LPLSLS-----NLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIG 307
             L         L  L+    +   L     A  + +W  L  L + +          + 
Sbjct: 205 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 264

Query: 308 ------LLTKLQYLFLYRNHFSGPIPSEI-----GKLTSLEKLDLSGNQLSGTIPPTLWN 356
                     LQ L L  N         +      K+  L  L+L+GN+ S      +  
Sbjct: 265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE-EDDVVDE 323

Query: 357 LTNLLSL 363
           +  + S 
Sbjct: 324 IREVFST 330

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.1 bits (97), Expect = 5e-05
 Identities = 35/172 (20%), Positives = 61/172 (35%), Gaps = 4/172 (2%)

Query: 93  SLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQ 152
             T +      L  E P  I    + T L L+ N+L  +  + LF  L  L  L L  NQ
Sbjct: 9   EGTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65

Query: 153 FQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQL 212
             G         S++  L+L  NK           +  ++ + L++N  +  +P S   L
Sbjct: 66  LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125

Query: 213 KNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLN 264
            +L  L+   +   +           L   +L       G P  + ++   +
Sbjct: 126 NSLTSLN-LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKD 176

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 6/154 (3%)

Query: 1   LDLSHNNISGPIPPAI-GTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGA 59
           L L+ N +       + G L +L  L+L  N   G  P+     S +Q L +  N +   
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93

Query: 60  FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119
                  L +++ L+L  N +       F ++ SLT L+L  N               L 
Sbjct: 94  SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLR 152

Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQF 153
              L+        P    + +  ++  +L  ++F
Sbjct: 153 KKSLNGGAARCGAP----SKVRDVQIKDLPHSEF 182

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 14/131 (10%)

Query: 1   LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNG-- 58
           LDL          P +   +    L+  +++   ++     ++ EL  L++ NN L    
Sbjct: 27  LDLKGL----RSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLD 81

Query: 59  AFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSF------- 111
                +     ++ L+L GN L++           L  L L  N L+  F          
Sbjct: 82  DMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141

Query: 112 ILTCRNLTYLD 122
                 L  LD
Sbjct: 142 RERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 6e-04
 Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 26/160 (16%)

Query: 204 QIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRL 263
           Q+   + +  +     L +  L S   P+L        L    + ++  L +   N+  L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGLRS--DPDLVAQNIDVVLNRR-SSMAATLRIIEENIPEL 67

Query: 264 NELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFS 323
             L LS+N L                         + ++   +     L+ L L  N   
Sbjct: 68  LSLNLSNNRLYR-----------------------LDDMSSIVQKAPNLKILNLSGNELK 104

Query: 324 GPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSL 363
                +  K   LE+L L GN LS T       ++ +   
Sbjct: 105 SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER 144

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.003
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 12/154 (7%)

Query: 2   DLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFP 61
           +L    +   +   +    + +   L+          ++   +    L+  ++       
Sbjct: 3   ELKPEQVEQ-LKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAA-TLR 58

Query: 62  FQLSNLRKVRYLDLGGNFLETPD--WSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119
               N+ ++  L+L  N L   D   S     P+L  L+L  NEL  E     +    L 
Sbjct: 59  IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118

Query: 120 YLDLSLNKLSGLIPER------LFTNLGKLEYLN 147
            L L  N LS    ++      +     KL  L+
Sbjct: 119 ELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 28/162 (17%), Positives = 43/162 (26%), Gaps = 19/162 (11%)

Query: 1   LDLSHNNISGPIPP------AIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNN 54
            +     + G IPP       + TL     L L+ N  E  I S +  +  L+ LS+  N
Sbjct: 23  TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRN 80

Query: 55  SLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILT 114
            +                              K  N+  L                 +  
Sbjct: 81  LIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYM--SNNKITNWGEIDKLAA 138

Query: 115 CRNLTYLDLSLNKLSGLIPE---------RLFTNLGKLEYLN 147
              L  L L+ N L     E          +   L  L+ L+
Sbjct: 139 LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 24/141 (17%), Positives = 42/141 (29%)

Query: 100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSP 159
           C  +  L+    +    NLT L +   +    +  R    LG+L  L +  +  +     
Sbjct: 15  CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74

Query: 160 NVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLD 219
                  L+ L L+ N         +  +S  +LV   N          L + +      
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGG 134

Query: 220 LRMNALNSTIPPELGLCTNLS 240
           +    L       L    N S
Sbjct: 135 VPEQKLQCHGQGPLAHMPNAS 155

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	569
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.62
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.27
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.16
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.51
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.2
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.16
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.07
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.72
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.56

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=1.7e-27  Score=225.13  Aligned_cols=255  Identities=29%  Similarity=0.470  Sum_probs=187.1

Q ss_pred             CCcEEecccccccc--cCCccccCCCCCCEEEccC-CccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEE
Q 047977          311 KLQYLFLYRNHFSG--PIPSEIGKLTSLEKLDLSG-NQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAF  387 (569)
Q Consensus       311 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  387 (569)
                      ++++|+++++.+.+  .+|..+..+++|++|++++ |.+...+|..+.++++|++|++++|.+.+..+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            45556666655543  2455666666666666664 45555556666666666666666666666566666666677777


Q ss_pred             EccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcc
Q 047977          388 DVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNF  467 (569)
Q Consensus       388 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  467 (569)
                      +++.|.....+|..+..++.++.+++++|.+.+.+|..+..+...++.++++.|++.+..+..+..+. ...+++.++..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            77777666666667777777777777777777777777766664457777888877766666665553 44788888888


Q ss_pred             eeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCc
Q 047977          468 TGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAEL  547 (569)
Q Consensus       468 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l  547 (569)
                      .+..+..+..+++++.+++++|.+.+.++ .++.+++|+.|++++|++++.+|..|+.+++|+.|++++|++++.+|. +
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~  287 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G  287 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred             ccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-c
Confidence            87788888888899999999998876554 578889999999999999888898999999999999999999988885 5


Q ss_pred             cCCCCCCeEeCcCCc-Cccc-CC
Q 047977          548 GNLTRLGVLSLDSNE-LTGK-NS  568 (569)
Q Consensus       548 ~~l~~L~~L~l~~n~-~~~~-~~  568 (569)
                      .++++|+.+++++|+ +.|. +|
T Consensus       288 ~~L~~L~~l~l~~N~~l~g~plp  310 (313)
T d1ogqa_         288 GNLQRFDVSAYANNKCLCGSPLP  310 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEESTTSS
T ss_pred             ccCCCCCHHHhCCCccccCCCCC
Confidence            788889999999998 5553 54

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2.9e-25  Score=216.80  Aligned_cols=342  Identities=25%  Similarity=0.303  Sum_probs=198.2

Q ss_pred             CCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEE
Q 047977          163 KLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFL  242 (569)
Q Consensus       163 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  242 (569)
                      .+.+|++|+++++.+...  +.+..+++|++|++++|.+++. + .+..+++|++|++++|.+.+..  .++.+++|+.+
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L  115 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGL  115 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccccccc--ccccccccccc
Confidence            345677777777776532  3455666666666666666543 2 2556666666666666654321  24455555555


Q ss_pred             EcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccc
Q 047977          243 ALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHF  322 (569)
Q Consensus       243 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  322 (569)
                      ++.++.+++...                           ......+.......+.+........  ....+...... ..
T Consensus       116 ~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~-~~  165 (384)
T d2omza2         116 TLFNNQITDIDP---------------------------LKNLTNLNRLELSSNTISDISALSG--LTSLQQLSFGN-QV  165 (384)
T ss_dssp             ECCSSCCCCCGG---------------------------GTTCTTCSEEEEEEEEECCCGGGTT--CTTCSEEEEEE-SC
T ss_pred             cccccccccccc---------------------------ccccccccccccccccccccccccc--ccccccccccc-cc
Confidence            555444432211                           1122233333333322221111000  00111111100 00


Q ss_pred             cccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccc
Q 047977          323 SGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENI  402 (569)
Q Consensus       323 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  402 (569)
                        .....+.............+...  ....+..+++++.+++++|.++...  ....+++|+++++++|.+.. + ..+
T Consensus       166 --~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~--~~~~~~~L~~L~l~~n~l~~-~-~~l  237 (384)
T d2omza2         166 --TDLKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKD-I-GTL  237 (384)
T ss_dssp             --CCCGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCC-C-GGG
T ss_pred             --chhhhhccccccccccccccccc--cccccccccccceeeccCCccCCCC--cccccCCCCEEECCCCCCCC-c-chh
Confidence              11122233333344444333322  2233455566666666666555322  23445566666666666552 2 245


Q ss_pred             cCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCc
Q 047977          403 SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLN  482 (569)
Q Consensus       403 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  482 (569)
                      ..+++++.+++++|.+++..  .+..++ +|+.|+++++++.+..  .+..++.++.+.+++|.+.+  ...+..+++++
T Consensus       238 ~~l~~L~~L~l~~n~l~~~~--~~~~~~-~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~  310 (384)
T d2omza2         238 ASLTNLTDLDLANNQISNLA--PLSGLT-KLTELKLGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLT  310 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCG--GGTTCT-TCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCS
T ss_pred             hcccccchhccccCccCCCC--cccccc-cCCEeeccCcccCCCC--cccccccccccccccccccc--ccccchhcccC
Confidence            56677777777777666433  244444 7888888877776322  36677788888888888873  34578888899


Q ss_pred             EEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCC
Q 047977          483 RVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSN  561 (569)
Q Consensus       483 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  561 (569)
                      +|++++|.+.+..+  +..+++|++|++++|++++.  ..++.+++|++|++++|++++..|  ++++++|+.|+|++|
T Consensus       311 ~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l--~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         311 YLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             eEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCC--hhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            99999998886543  77889999999999988743  368889999999999999886544  788999999999887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.5e-24  Score=211.66  Aligned_cols=342  Identities=23%  Similarity=0.288  Sum_probs=180.2

Q ss_pred             cCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEE
Q 047977          139 NLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHL  218 (569)
Q Consensus       139 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  218 (569)
                      .+.+|++|+++++.+++.  +.+..+++|++|++++|++++.  ..++.+++|++|++++|.+.+.  ..+..+++|+.+
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l--~~l~~L~~L~~L~L~~n~i~~i--~~l~~l~~L~~L  115 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADI--TPLANLTNLTGL  115 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC--ccccCCcccccccccccccccc--cccccccccccc
Confidence            445677777777766532  3466667777777777766543  2366777777777777776643  236677777777


Q ss_pred             EcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcc
Q 047977          219 DLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSF  298 (569)
Q Consensus       219 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  298 (569)
                      ++.++.+.....  ......+.......+.+......................      ....+...+.........+..
T Consensus       116 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  187 (384)
T d2omza2         116 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT------DLKPLANLTTLERLDISSNKV  187 (384)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC------CCGGGTTCTTCCEEECCSSCC
T ss_pred             cccccccccccc--ccccccccccccccccccccccccccccccccccccccc------hhhhhcccccccccccccccc
Confidence            777776654322  233344445544444433222111111111111111100      001122233333333333322


Q ss_pred             eeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccc
Q 047977          299 MGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEI  378 (569)
Q Consensus       299 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  378 (569)
                      .  ....+..+++++.+.+++|.+++..  .+...++|++|++++|.+.+.  ..+..+++|+.+++++|.+++..  .+
T Consensus       188 ~--~~~~~~~l~~~~~l~l~~n~i~~~~--~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~  259 (384)
T d2omza2         188 S--DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PL  259 (384)
T ss_dssp             C--CCGGGGGCTTCSEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GG
T ss_pred             c--cccccccccccceeeccCCccCCCC--cccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cc
Confidence            2  1233444556666666666555332  233445566666666655422  23445555555555555544211  23


Q ss_pred             cCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCc
Q 047977          379 GSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALE  458 (569)
Q Consensus       379 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  458 (569)
                      ..+++|+.++++++.+.                        +..  .+..+. .++.+.++.|.+.+  ...+..+++++
T Consensus       260 ~~~~~L~~L~l~~~~l~------------------------~~~--~~~~~~-~l~~l~~~~n~l~~--~~~~~~~~~l~  310 (384)
T d2omza2         260 SGLTKLTELKLGANQIS------------------------NIS--PLAGLT-ALTNLELNENQLED--ISPISNLKNLT  310 (384)
T ss_dssp             TTCTTCSEEECCSSCCC------------------------CCG--GGTTCT-TCSEEECCSSCCSC--CGGGGGCTTCS
T ss_pred             cccccCCEeeccCcccC------------------------CCC--cccccc-cccccccccccccc--ccccchhcccC
Confidence            44445555555444443                        221  122232 55555565555542  22355566777


Q ss_pred             EEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCC
Q 047977          459 ELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRN  537 (569)
Q Consensus       459 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n  537 (569)
                      .|++++|++++. + .+..+++|++|++++|++++. + .++.+++|++|++++|++++..|  ++++++|+.|+|++|
T Consensus       311 ~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         311 YLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSDV-S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             EEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             eEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCCC-h-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            777777777632 2 366777777777777777642 2 46777777777777777765432  677777777777766

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=3.9e-26  Score=215.72  Aligned_cols=250  Identities=26%  Similarity=0.448  Sum_probs=215.8

Q ss_pred             CCcEEEccCCccee--eCCccccCCCCCcEEeccc-ccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEE
Q 047977          287 ELESLQIQNNSFMG--NIPPEIGLLTKLQYLFLYR-NHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSL  363 (569)
Q Consensus       287 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  363 (569)
                      .++.|+++++.+.+  .+|..++.+++|++|++++ |.+++.+|..+.++++|++|++++|.+....+..+..++.|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            57778888777654  4677888889999999986 67887888888999999999999999887777888888999999


Q ss_pred             EcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCC-CEEEccCCcccccCCchhhccCCCCceEEcccCc
Q 047977          364 QLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNL-NKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNS  442 (569)
Q Consensus       364 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L-~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  442 (569)
                      ++++|.+...++..+..++.++.+++++|.+.+.+|..+..+..+ +.+.+++|++++..+..+...  ....+++..+.
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l--~~~~l~l~~~~  208 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNM  208 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--CCSEEECCSSE
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc--ccccccccccc
Confidence            999998887888888999999999999999988888888887776 788999999998888777665  55679999998


Q ss_pred             CccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcC
Q 047977          443 FSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPD  522 (569)
Q Consensus       443 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  522 (569)
                      ..+.++.....+++++.+++++|.+.+. +..+..+++|+.|++++|.+++.+|+.++.+++|++|++++|.+++.+|. 
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-  286 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-  286 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-
T ss_pred             cccccccccccccccccccccccccccc-ccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-
Confidence            8888888888899999999999999854 44688889999999999999999999999999999999999999988885 


Q ss_pred             cccCCCCCEEECCCCcce
Q 047977          523 WGECRNLSNLQLDRNKIS  540 (569)
Q Consensus       523 l~~~~~L~~L~l~~n~~~  540 (569)
                      ++.+++|+.+++++|+..
T Consensus       287 ~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         287 GGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             STTGGGSCGGGTCSSSEE
T ss_pred             cccCCCCCHHHhCCCccc
Confidence            578899999999999844

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=6.5e-24  Score=199.62  Aligned_cols=267  Identities=20%  Similarity=0.254  Sum_probs=190.0

Q ss_pred             CCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcc
Q 047977          287 ELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLF  366 (569)
Q Consensus       287 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  366 (569)
                      ..+.++-++..++ .+|..+  .+++++|++++|+++...+..|.++++|++|++++|.+....+..|.+++.|++++++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCC-ccCCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            3455666665555 345444  3567777887777774444567777778888888777776666677777788888888


Q ss_pred             cCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccc--ccCCchhhccCCCCceEEcccCcCc
Q 047977          367 FNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFS--GSIPGDFGKFSPSLINVSFSNNSFS  444 (569)
Q Consensus       367 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~  444 (569)
                      +|+++. ++..  ....++.+...+|.+....+..+........+....+...  ...+..+..+. +|+.+++++|.+.
T Consensus        88 ~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~-~L~~l~l~~n~l~  163 (305)
T d1xkua_          88 KNQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-KLSYIRIADTNIT  163 (305)
T ss_dssp             SSCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT-TCCEEECCSSCCC
T ss_pred             CCccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCcccccccc-ccCccccccCCcc
Confidence            777763 3322  2356777777777776544445566667777777666432  23344555554 7888888888775


Q ss_pred             cccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcc
Q 047977          445 GELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWG  524 (569)
Q Consensus       445 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~  524 (569)
                       .++..  .+++|+.|++++|......+..+.+++.+++|++++|.+.+..+..+..+++|++|++++|+++ .+|.+|.
T Consensus       164 -~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~  239 (305)
T d1xkua_         164 -TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA  239 (305)
T ss_dssp             -SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred             -ccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccc
Confidence             34433  3568888888888888777778888888888888888888777888888888888888888887 5577888


Q ss_pred             cCCCCCEEECCCCcceecCCcC------ccCCCCCCeEeCcCCcCc
Q 047977          525 ECRNLSNLQLDRNKISGGIPAE------LGNLTRLGVLSLDSNELT  564 (569)
Q Consensus       525 ~~~~L~~L~l~~n~~~~~~~~~------l~~l~~L~~L~l~~n~~~  564 (569)
                      .+++|+.|++++|+++......      ...+++|+.|++++||+.
T Consensus       240 ~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         240 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            8888889988888888654333      345778888999999885

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.4e-22  Score=190.43  Aligned_cols=259  Identities=20%  Similarity=0.249  Sum_probs=146.3

Q ss_pred             CcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEccc
Q 047977          288 LESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFF  367 (569)
Q Consensus       288 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  367 (569)
                      ++.|++++|.+....+.+|..+++|++|++++|.+....+..|..++.|++|++++|+++.. +..  ..+.++.+...+
T Consensus        33 l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l-~~~--~~~~l~~L~~~~  109 (305)
T d1xkua_          33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEK--MPKTLQELRVHE  109 (305)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CSS--CCTTCCEEECCS
T ss_pred             CCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcC-ccc--hhhhhhhhhccc
Confidence            44444444444322222344444444444444444433333444444444444444444321 111  123444444444


Q ss_pred             CcccccCCccccCCCCCCEEEccCCccc--ccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCcc
Q 047977          368 NNLSGTIPPEIGSMASLVAFDVNTNQLH--GELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG  445 (569)
Q Consensus       368 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  445 (569)
                      |.+.......+........+++..+...  ...+..+..+++|+.+.+.+|.++. ++..+   .++++.|++++|....
T Consensus       110 n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~---~~~L~~L~l~~n~~~~  185 (305)
T d1xkua_         110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL---PPSLTELHLDGNKITK  185 (305)
T ss_dssp             SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC---CTTCSEEECTTSCCCE
T ss_pred             cchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCccc---CCccCEEECCCCcCCC
Confidence            4444333333344444555555444222  1223345556666666666665552 23222   2377777777777766


Q ss_pred             ccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcC---
Q 047977          446 ELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPD---  522 (569)
Q Consensus       446 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---  522 (569)
                      ..+..+..++.++.|++++|.+.+..+..+.++++|++|+|++|+++ .+|.++..+++|++|++++|+++......   
T Consensus       186 ~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~  264 (305)
T d1xkua_         186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP  264 (305)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             CChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccC
Confidence            66667777778888888888887666777788888888888888887 45667888888888888888877543333   


Q ss_pred             ---cccCCCCCEEECCCCcce--ecCCcCccCCCCCC
Q 047977          523 ---WGECRNLSNLQLDRNKIS--GGIPAELGNLTRLG  554 (569)
Q Consensus       523 ---l~~~~~L~~L~l~~n~~~--~~~~~~l~~l~~L~  554 (569)
                         +...++|+.|++++|++.  ...|.+|+.+-...
T Consensus       265 ~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~  301 (305)
T d1xkua_         265 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA  301 (305)
T ss_dssp             SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGG
T ss_pred             cchhcccCCCCEEECCCCcCccCcCCHhHhcccccCc
Confidence               345677888888888775  34555555544433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.5e-22  Score=187.83  Aligned_cols=267  Identities=18%  Similarity=0.210  Sum_probs=179.7

Q ss_pred             EEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEccc-Cc
Q 047977          291 LQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFF-NN  369 (569)
Q Consensus       291 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~  369 (569)
                      ++.++++++ .+|..+  .+.+++|++++|.+++..+..|..+++|++|+++++.+.......+..++.++.+.+.. +.
T Consensus        16 v~c~~~~L~-~iP~~i--p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCC--CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            344444444 334333  24567777777777655555667777777777777777666666666667777766543 34


Q ss_pred             ccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccCh
Q 047977          370 LSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPY  449 (569)
Q Consensus       370 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  449 (569)
                      +....+..+..+++|++++++.|.+....+..+....+|+.+++++|.+++..+..+.... +|+.|++++|.+.+..+.
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~-~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-NLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCEECTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcccc-chhhcccccCcccccchh
Confidence            4444456677777777777777777654555666677778888888777755555555555 788888888888765666


Q ss_pred             hhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCC
Q 047977          450 ELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNL  529 (569)
Q Consensus       450 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L  529 (569)
                      .+..+++|+.+++++|+++...|..|.++++|++|++++|.+.+..+..|+.+++|++|++++|++...-+ .-.-...+
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~-~~~l~~~l  250 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWL  250 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG-GHHHHHHH
T ss_pred             hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc-chHHHHHH
Confidence            77778889999999998887778888888999999999999988888888889999999999988763211 11111234


Q ss_pred             CEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcc
Q 047977          530 SNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG  565 (569)
Q Consensus       530 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  565 (569)
                      +.+....+++.-..|..+++   .+..++..+.++|
T Consensus       251 ~~~~~~~~~~~C~~p~~l~g---~~l~~l~~~~l~g  283 (284)
T d1ozna_         251 QKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG  283 (284)
T ss_dssp             HHCCSEECCCBEEESGGGTT---CBGGGSCGGGSCC
T ss_pred             HhCcCCCCceEeCCchHHcC---CccccCCHHHCCC
Confidence            55555566666556665543   3334455555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.1e-22  Score=184.22  Aligned_cols=223  Identities=20%  Similarity=0.200  Sum_probs=146.6

Q ss_pred             EEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccC-C
Q 047977          314 YLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNT-N  392 (569)
Q Consensus       314 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~  392 (569)
                      .+..++++++ .+|..+.  +++++|+|++|.++...+..|.++++|+++++++|.+.......+..+..++.+.+.. +
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            3455555555 5555443  4778888888888866667788888888888888888777777777777888877654 3


Q ss_pred             cccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCC
Q 047977          393 QLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLP  472 (569)
Q Consensus       393 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  472 (569)
                      .+....+..+..+++|+.+++++|.+....+..+.... +|+.+++++|.+++..+..+..+++|+.|++++|++....+
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~  170 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhc-ccchhhhccccccccChhHhccccchhhcccccCcccccch
Confidence            44433355677777777777777776644444444443 66667777666664444445556666666666666665555


Q ss_pred             ccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcce
Q 047977          473 ACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS  540 (569)
Q Consensus       473 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  540 (569)
                      ..+.++++|+++++++|.+++..|..|+.+++|++|++++|.+.+..+..|+.+++|+.|++++|++.
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            56666666666666666666666666666666666666666666555555666666666666666655

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.2e-21  Score=173.51  Aligned_cols=198  Identities=20%  Similarity=0.212  Sum_probs=127.3

Q ss_pred             CCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEc
Q 047977          359 NLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSF  438 (569)
Q Consensus       359 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l  438 (569)
                      .+.+++.+++.++ .+|..+.  +.+++|++++|.+.+..+..+..+++|++|++++|+++.. + .+..+ ++|++|++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l-~~L~~L~L   84 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTL-PVLGTLDL   84 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCC-TTCCEEEC
T ss_pred             CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccc-cccccccc
Confidence            3444455555544 2333221  3455555555555533334455555555565555555422 1 12223 26667777


Q ss_pred             ccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCccccc
Q 047977          439 SNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGE  518 (569)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  518 (569)
                      ++|++. ..+..+..+++|+.|++++|.+....+..+..+.++++|++++|.+....+..+..+++++.+++++|.+++.
T Consensus        85 s~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             cccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            766665 3344556667777777777777655556667777788888888877766667777778888888888887766


Q ss_pred             CCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCc
Q 047977          519 ISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT  564 (569)
Q Consensus       519 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  564 (569)
                      .+..|+.+++|++|++++|+++ .+|+++..+++|+.|++++||+.
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            6666777888888888888877 56777777788888888888765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1e-19  Score=166.40  Aligned_cols=201  Identities=22%  Similarity=0.259  Sum_probs=150.1

Q ss_pred             cCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcE
Q 047977           17 GTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTH   96 (569)
Q Consensus        17 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   96 (569)
                      .+...+.+++.++++++ .+|..+.  +++++|++++|.+++..+.+|.++++|++|++++|.+..+.  .++.+++|++
T Consensus         7 ~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~   81 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGT   81 (266)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCE
T ss_pred             cccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--cccccccccc
Confidence            45566777788888888 4566554  57888888888888666677888888888888888877543  4567788888


Q ss_pred             EEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCc
Q 047977           97 LSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNK  176 (569)
Q Consensus        97 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  176 (569)
                      |++++|.+. ..+..+..+++|++|+++++.+. .++...+..+.+++++++.+|.+....+..+..+++++.+++++|+
T Consensus        82 L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccccccccc-ccccccccccccccccccccccc-eeeccccccccccccccccccccceeccccccccccchhccccccc
Confidence            888888877 45666777888888888888776 3444555777888888888887776666666777788888888887


Q ss_pred             cccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCC
Q 047977          177 FSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL  225 (569)
Q Consensus       177 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  225 (569)
                      ++...+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|+.
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            77666666777777777777777776 5666666777777777777764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=3e-15  Score=143.10  Aligned_cols=180  Identities=24%  Similarity=0.283  Sum_probs=107.4

Q ss_pred             CCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEc
Q 047977           20 SNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL   99 (569)
Q Consensus        20 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l   99 (569)
                      .++++|++++++++ .+|+.   .++|++|++++|+++ .+|..   ..+|+.|++++|.+..+..  +  .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALSD--L--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCCS--C--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchhhh--h--ccccccccc
Confidence            46788888888887 45643   467888888888887 55543   3578888888887765431  1  245888888


Q ss_pred             ccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCcccc
Q 047977          100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSG  179 (569)
Q Consensus       100 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  179 (569)
                      ++|.+. .+|. ++.+++|++++++++.+... +    .....+..+.+..+...  ....+..++.++.+.+.++....
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~-~----~~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKL-P----DLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCSCC-C----CCCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred             cccccc-cccc-hhhhccceeecccccccccc-c----cccccccchhhcccccc--ccccccccccceecccccccccc
Confidence            888776 4443 46677888888877766522 2    22355666666555443  23445666777777777765542


Q ss_pred             CCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCC
Q 047977          180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN  226 (569)
Q Consensus       180 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  226 (569)
                      .. .   .....+.+......+. .. .....++.++.++++++...
T Consensus       177 ~~-~---~~~~~~~l~~~~~~~~-~~-~~~~~l~~L~~l~l~~n~~~  217 (353)
T d1jl5a_         177 LP-D---LPLSLESIVAGNNILE-EL-PELQNLPFLTTIYADNNLLK  217 (353)
T ss_dssp             CC-C---CCTTCCEEECCSSCCS-SC-CCCTTCTTCCEEECCSSCCS
T ss_pred             cc-c---cccccccccccccccc-cc-cccccccccccccccccccc
Confidence            21 1   1122233444433332 12 22445566666666665543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=1.5e-15  Score=145.31  Aligned_cols=253  Identities=24%  Similarity=0.280  Sum_probs=122.4

Q ss_pred             CCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEc
Q 047977          262 RLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDL  341 (569)
Q Consensus       262 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  341 (569)
                      .|++|++++|.+. .++.  ++.+++|+.++++++.+... +.   ..+.+..+.+..+....  ...+..++.++.+.+
T Consensus        99 ~L~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l  169 (353)
T d1jl5a_          99 LLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYA  169 (353)
T ss_dssp             TCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEEC
T ss_pred             ccccccccccccc-cccc--hhhhccceeecccccccccc-cc---ccccccchhhccccccc--cccccccccceeccc
Confidence            3555555555444 2322  34455555555555544321 11   12344455544443331  123444555555655


Q ss_pred             cCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccccc
Q 047977          342 SGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGS  421 (569)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~  421 (569)
                      .++......    ......+.+...++.+. .. ..+..++.++.++++.|... ..+   ....++..+.+.++.+...
T Consensus       170 ~~n~~~~~~----~~~~~~~~l~~~~~~~~-~~-~~~~~l~~L~~l~l~~n~~~-~~~---~~~~~l~~~~~~~~~~~~~  239 (353)
T d1jl5a_         170 DNNSLKKLP----DLPLSLESIVAGNNILE-EL-PELQNLPFLTTIYADNNLLK-TLP---DLPPSLEALNVRDNYLTDL  239 (353)
T ss_dssp             CSSCCSSCC----CCCTTCCEEECCSSCCS-SC-CCCTTCTTCCEEECCSSCCS-SCC---SCCTTCCEEECCSSCCSCC
T ss_pred             ccccccccc----ccccccccccccccccc-cc-cccccccccccccccccccc-ccc---ccccccccccccccccccc
Confidence            555543211    11122233333333332 11 12344556666666655544 222   2234455555555544421


Q ss_pred             CCchhhccCCCCceEEcccCcCccccChhhhC-CCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhc
Q 047977          422 IPGDFGKFSPSLINVSFSNNSFSGELPYELCS-GFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFG  500 (569)
Q Consensus       422 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~  500 (569)
                      .     ..++.+...++..+.+.+.     .. .......++..+.+.. .+   ..+++|++|++++|.+.. +|.   
T Consensus       240 ~-----~~~~~l~~~~~~~~~~~~l-----~~l~~~~~~~~~~~~~~~~-~~---~~~~~L~~L~Ls~N~l~~-lp~---  301 (353)
T d1jl5a_         240 P-----ELPQSLTFLDVSENIFSGL-----SELPPNLYYLNASSNEIRS-LC---DLPPSLEELNVSNNKLIE-LPA---  301 (353)
T ss_dssp             C-----CCCTTCCEEECCSSCCSEE-----SCCCTTCCEEECCSSCCSE-EC---CCCTTCCEEECCSSCCSC-CCC---
T ss_pred             c-----ccccccccccccccccccc-----ccccchhcccccccCcccc-cc---ccCCCCCEEECCCCccCc-ccc---
Confidence            1     1122455555554443311     11 1234555666665542 22   335678888888887763 443   


Q ss_pred             CCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCc
Q 047977          501 VHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLD  559 (569)
Q Consensus       501 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  559 (569)
                      .+++|+.|++++|.++ .+|+.   +++|++|++++|+++ .+|..   ..+|+.|.+.
T Consensus       302 ~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         302 LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDI---PESVEDLRMN  352 (353)
T ss_dssp             CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECC
T ss_pred             ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcc---ccccCeeECc
Confidence            3577888888888776 44543   456888888888876 34543   2346666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=2.5e-17  Score=146.59  Aligned_cols=204  Identities=16%  Similarity=0.235  Sum_probs=117.4

Q ss_pred             EEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCc
Q 047977          314 YLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQ  393 (569)
Q Consensus       314 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  393 (569)
                      .+++..+.+++.  ..+..+.+|+.|++.+|.+.+.  ..+.++++|++|++++|.++..  ..+..+++++.+++++|.
T Consensus        23 ~~~l~~~~~~d~--~~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~--~~l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          23 KIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNP   96 (227)
T ss_dssp             HHHTTCSSTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC--GGGTTCCSCCEEECCSCC
T ss_pred             HHHhCCCCcCCc--CCHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecc--cccccccccccccccccc
Confidence            344444555433  2334556677777777766533  3466667777777766666532  225556666666666655


Q ss_pred             ccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCc
Q 047977          394 LHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPA  473 (569)
Q Consensus       394 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  473 (569)
                      ++ .+ ..+..++.|+.+.+                         +++...+.  ..+...+.++.+.++++.+..  ..
T Consensus        97 ~~-~i-~~l~~l~~L~~l~l-------------------------~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~--~~  145 (227)
T d1h6ua2          97 LK-NV-SAIAGLQSIKTLDL-------------------------TSTQITDV--TPLAGLSNLQVLYLDLNQITN--IS  145 (227)
T ss_dssp             CS-CC-GGGTTCTTCCEEEC-------------------------TTSCCCCC--GGGTTCTTCCEEECCSSCCCC--CG
T ss_pred             cc-cc-cccccccccccccc-------------------------cccccccc--chhccccchhhhhchhhhhch--hh
Confidence            54 22 23444445555544                         44443321  223445566666666665542  22


Q ss_pred             cccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCC
Q 047977          474 CMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRL  553 (569)
Q Consensus       474 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L  553 (569)
                      .+.++++|++|++++|.+....  .++.+++|++|++++|++++.  ..++.+++|++|++++|++++..  .++++++|
T Consensus       146 ~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L  219 (227)
T d1h6ua2         146 PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS--PLANTSNL  219 (227)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTC
T ss_pred             hhccccccccccccccccccch--hhcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCc--ccccCCCC
Confidence            3556667777777777665322  266777777777777776643  34677777777777777777433  26777777


Q ss_pred             CeEeCcC
Q 047977          554 GVLSLDS  560 (569)
Q Consensus       554 ~~L~l~~  560 (569)
                      +.|++++
T Consensus       220 ~~L~lsn  226 (227)
T d1h6ua2         220 FIVTLTN  226 (227)
T ss_dssp             CEEEEEE
T ss_pred             CEEEeeC
Confidence            7777753

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.9e-20  Score=186.95  Aligned_cols=185  Identities=16%  Similarity=0.070  Sum_probs=79.6

Q ss_pred             cCCCCCEEEcccCccccc-----CCccccCCCCCCEEEccCCccccc----CCccccCCCCCCEEEccCCcccccCCch-
Q 047977          356 NLTNLLSLQLFFNNLSGT-----IPPEIGSMASLVAFDVNTNQLHGE----LPENISRLVNLNKFSVFTNNFSGSIPGD-  425 (569)
Q Consensus       356 ~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~~~~~-  425 (569)
                      ..+.++.+++.+|.+...     ..........++.+++++|.+...    ....+...+.++.+++++|.++...... 
T Consensus       224 ~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l  303 (460)
T d1z7xw1         224 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  303 (460)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             ccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            445555666655543211     111222344555666655554321    1122334455555555555543221111 


Q ss_pred             ---hhccCCCCceEEcccCcCccccCh----hhhCCCCCcEEEccCCcceee----CCccc-cCCCCCcEEEccCCcccc
Q 047977          426 ---FGKFSPSLINVSFSNNSFSGELPY----ELCSGFALEELTVNGNNFTGS----LPACM-RNCSNLNRVRFDGNQFTG  493 (569)
Q Consensus       426 ---~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~----~~~~l-~~~~~L~~L~l~~~~~~~  493 (569)
                         +......|+.+++++|.+.+....    .+...++|++|++++|.+++.    +...+ ...+.|++|++++|.++.
T Consensus       304 ~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~  383 (460)
T d1z7xw1         304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  383 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             hccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh
Confidence               111122455555555555432211    222334555555555554421    11112 233445555555555543


Q ss_pred             c----hhhhhcCCCCCcEEeCcCCcccccCCcCc----c-cCCCCCEEECCCCcce
Q 047977          494 N----ITRAFGVHPRLDFIRLSGNHFIGEISPDW----G-ECRNLSNLQLDRNKIS  540 (569)
Q Consensus       494 ~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l----~-~~~~L~~L~l~~n~~~  540 (569)
                      .    +.+.+..+++|++|++++|++++.....+    . ....|+.|++.+|.+.
T Consensus       384 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         384 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            2    22334445555555555555543222221    1 1224555555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=6.8e-20  Score=182.86  Aligned_cols=305  Identities=17%  Similarity=0.166  Sum_probs=188.8

Q ss_pred             CCCCEEeCcCCcCccccC---ccccCCCCCCcEEEccCCcceeeCCcc----cc-CCCCCcEEeccccccccc----CCc
Q 047977          261 SRLNELGLSDNFLSGEIS---ANLIGNWTELESLQIQNNSFMGNIPPE----IG-LLTKLQYLFLYRNHFSGP----IPS  328 (569)
Q Consensus       261 ~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~-~~~~L~~L~l~~~~~~~~----~~~  328 (569)
                      .+|+.|++++|.+++...   ...+..+++|+.|++++|.+.+.....    +. ..............+...    ...
T Consensus        84 ~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (460)
T d1z7xw1          84 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS  163 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccc
Confidence            356666666665543221   122445566666666666554221111    11 111223333333322211    112


Q ss_pred             cccCCCCCCEEEccCCccccccCc----cc-ccCCCCCEEEcccCccccc----CCccccCCCCCCEEEccCCcccc---
Q 047977          329 EIGKLTSLEKLDLSGNQLSGTIPP----TL-WNLTNLLSLQLFFNNLSGT----IPPEIGSMASLVAFDVNTNQLHG---  396 (569)
Q Consensus       329 ~l~~~~~L~~L~l~~~~~~~~~~~----~~-~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~---  396 (569)
                      .+.....++.+.++++...+....    .+ ........+...++.+...    ....+...+.++.+++.++....   
T Consensus       164 ~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~  243 (460)
T d1z7xw1         164 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM  243 (460)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccccc
Confidence            234567788888888776532111    11 1223566777777765421    11234457889999999987643   


Q ss_pred             --cCCccccCCCCCCEEEccCCcccccCC----chhhccCCCCceEEcccCcCccccChhh----h-CCCCCcEEEccCC
Q 047977          397 --ELPENISRLVNLNKFSVFTNNFSGSIP----GDFGKFSPSLINVSFSNNSFSGELPYEL----C-SGFALEELTVNGN  465 (569)
Q Consensus       397 --~~~~~~~~l~~L~~l~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~-~~~~L~~L~l~~~  465 (569)
                        ...........++.+++++|.+.....    ..+... +.++.+++++|.+.+.....+    . ....|+.+++++|
T Consensus       244 ~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~-~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             chhhccccccccccccccccccccccccccccccccccc-ccccccccccccccccccchhhcccccccccccccccccc
Confidence              122344567899999999998764322    223334 489999999999875433322    2 3468999999999


Q ss_pred             cceeeCC----ccccCCCCCcEEEccCCccccc----hhhhhc-CCCCCcEEeCcCCccccc----CCcCcccCCCCCEE
Q 047977          466 NFTGSLP----ACMRNCSNLNRVRFDGNQFTGN----ITRAFG-VHPRLDFIRLSGNHFIGE----ISPDWGECRNLSNL  532 (569)
Q Consensus       466 ~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~----~~~~l~-~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L  532 (569)
                      .++....    ..+..+++|++|+|++|.+.+.    +.+.+. ..+.|++|++++|.+++.    ++..+..+++|++|
T Consensus       323 ~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L  402 (460)
T d1z7xw1         323 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL  402 (460)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred             chhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEE
Confidence            8874332    2345678999999999998753    333343 578899999999999753    34457788999999


Q ss_pred             ECCCCcceecCCcCc----c-CCCCCCeEeCcCCcCccc
Q 047977          533 QLDRNKISGGIPAEL----G-NLTRLGVLSLDSNELTGK  566 (569)
Q Consensus       533 ~l~~n~~~~~~~~~l----~-~l~~L~~L~l~~n~~~~~  566 (569)
                      ++++|.++..+...+    . ..+.|+.|++.+|.+..+
T Consensus       403 ~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         403 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             ECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             ECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence            999999986444333    2 345799999999998754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=4e-17  Score=145.23  Aligned_cols=200  Identities=27%  Similarity=0.364  Sum_probs=110.5

Q ss_pred             CCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCC
Q 047977            3 LSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLET   82 (569)
Q Consensus         3 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~   82 (569)
                      ++.+++++..  .++.+.+|+.|++.+|+++. + +.+..+++|++|++++|.+++..+  +..+++++++++++|.+..
T Consensus        26 l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~   99 (227)
T d1h6ua2          26 AGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN   99 (227)
T ss_dssp             TTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC
T ss_pred             hCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc
Confidence            4455555443  34566677777777777763 3 346677777777777777664332  6667777777777666654


Q ss_pred             CCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCC
Q 047977           83 PDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVS  162 (569)
Q Consensus        83 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  162 (569)
                      +  ..+.++++|+.++++++....  ...+...+.++.+.++.+.+....+   +.++++|++|++.++.+...  ..+.
T Consensus       100 i--~~l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~L~~L~l~~n~~~~~--~~l~  170 (227)
T d1h6ua2         100 V--SAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDL--TPLA  170 (227)
T ss_dssp             C--GGGTTCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGT
T ss_pred             c--ccccccccccccccccccccc--cchhccccchhhhhchhhhhchhhh---hccccccccccccccccccc--hhhc
Confidence            3  245666667777766665542  2234455666666666665542211   35556666666666655421  2345


Q ss_pred             CCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcc
Q 047977          163 KLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLR  221 (569)
Q Consensus       163 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  221 (569)
                      .+++|+.|++++|.+...  ..++.+++|+.|++++|++++. + .+..+++|++|+++
T Consensus       171 ~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         171 NLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLT  225 (227)
T ss_dssp             TCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEE
T ss_pred             ccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEee
Confidence            555666666665554422  2244445555555555544432 1 24444555555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.8e-16  Score=142.81  Aligned_cols=216  Identities=16%  Similarity=0.084  Sum_probs=120.7

Q ss_pred             CEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCC-CCCccCCCCCCCcEEEccc
Q 047977           23 TFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLET-PDWSKFSNMPSLTHLSLCY  101 (569)
Q Consensus        23 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~  101 (569)
                      ++++.++.+++ .+|..+.  +++++|++++|.++...+.+|.++++|++|++++|.+.. .....|.++++++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            56777776666 4554443  467778887777775555567777778888877776654 3455566777777777654


Q ss_pred             -ccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCC-CCCEEEccCCcccc
Q 047977          102 -NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLS-NLTVLRLATNKFSG  179 (569)
Q Consensus       102 -~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~  179 (569)
                       +.+....+..+..+++|++++++++.+....+...+..+..++.+...++.+.......+..++ .++.++++++.+..
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             3455455566777777777777777665332222223344444444455554433334444433 56666666666554


Q ss_pred             CCCcCcCCCCCCcEE-EcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEE
Q 047977          180 PIPGDIGLMSNIQLV-ELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFL  242 (569)
Q Consensus       180 ~~~~~l~~~~~L~~L-~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  242 (569)
                      .....+ ...+++.+ .+.++.++..-+..|..+++|++|++++|++....+..+.++++|+.+
T Consensus       168 i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         168 IHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             ECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESS
T ss_pred             cccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccC
Confidence            333322 23333333 334444443223335556666666666666554444444444444433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2e-16  Score=142.41  Aligned_cols=104  Identities=17%  Similarity=0.216  Sum_probs=54.8

Q ss_pred             cEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCcccccc-CcccccCCCCCEEEccc
Q 047977          289 ESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTI-PPTLWNLTNLLSLQLFF  367 (569)
Q Consensus       289 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~  367 (569)
                      +.++.++..++ .+|..+  ++++++|++++|.++...+..|.++++|++|++++|.+.+.. +..|..++.++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            45555555544 344332  235666666666665444445566666666666666554322 33455566666665543


Q ss_pred             -CcccccCCccccCCCCCCEEEccCCccc
Q 047977          368 -NNLSGTIPPEIGSMASLVAFDVNTNQLH  395 (569)
Q Consensus       368 -~~~~~~~~~~~~~~~~L~~L~l~~~~~~  395 (569)
                       +.+....+..+.++++|+.++++++.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             cccccccccccccccccccccccchhhhc
Confidence             3344344444555555555555555443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=2.1e-16  Score=136.19  Aligned_cols=130  Identities=23%  Similarity=0.287  Sum_probs=92.4

Q ss_pred             CceEEcccCcCccccChhhhCCCCCcEEEccCCccee-eCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCc
Q 047977          433 LINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTG-SLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLS  511 (569)
Q Consensus       433 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  511 (569)
                      .+.+++++++++ .+|..+.  +++++|++++|+++. ..+..|.++++|++|++++|.+....+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            345666666665 5555442  467777777777754 234556777777777777777777777777777777777777


Q ss_pred             CCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcc
Q 047977          512 GNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG  565 (569)
Q Consensus       512 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  565 (569)
                      +|++....+..|.++++|+.|+|++|++++..+++|+.+++|++|++++|++..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            777776666667777777777777777777777777777777777777777764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=6.9e-16  Score=133.73  Aligned_cols=147  Identities=27%  Similarity=0.342  Sum_probs=65.6

Q ss_pred             CCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEE
Q 047977           18 TLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHL   97 (569)
Q Consensus        18 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L   97 (569)
                      .++++++|+++++++...  +.++.+++|++|++++|++++..+  +.++++|++|++++|.+....  .+.++++|++|
T Consensus        38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--ccccccccccc
Confidence            345555555555555422  234455555555555555543221  445555555555555443322  24444555555


Q ss_pred             EcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCcc
Q 047977           98 SLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKF  177 (569)
Q Consensus        98 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  177 (569)
                      +++++....  ...+..+++|+.+++++|.+. .++.  +..++++++|++.+|++++.  +.++.+++|++|++++|++
T Consensus       112 ~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~-~~~~--l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         112 TLFNNQITD--IDPLKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKV  184 (199)
T ss_dssp             ECCSSCCCC--CGGGTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccc--ccccchhhhhHHhhhhhhhhc-cccc--ccccccccccccccccccCC--ccccCCCCCCEEECCCCCC
Confidence            555444431  122344444555554444443 2221  24444444444444444321  1234444444444444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=9.2e-16  Score=134.09  Aligned_cols=163  Identities=21%  Similarity=0.264  Sum_probs=98.6

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEc
Q 047977          383 SLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTV  462 (569)
Q Consensus       383 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  462 (569)
                      +++.+++++|.+.. + ..+..+++|++|++++|++++..  .+..++ +|++|++++|++++ ++ .+..+++|+.|++
T Consensus        47 ~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~-~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          47 SIDQIIANNSDIKS-V-QGIQYLPNVTKLFLNGNKLTDIK--PLANLK-NLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             TCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCT-TCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             CccEEECcCCCCCC-c-hhHhhCCCCCEEeCCCccccCcc--ccccCc-cccccccccccccc-cc-ccccccccccccc
Confidence            44444444444432 1 12344555555555555544322  122333 66666666666542 33 4566677777777


Q ss_pred             cCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceec
Q 047977          463 NGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGG  542 (569)
Q Consensus       463 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~  542 (569)
                      ++|.+. . ...+.++++++.+++++|.++..  ..+..+++|+++++++|.+.+.  ..+..+++|+.|++++|.+++ 
T Consensus       120 ~~~~~~-~-~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i--~~l~~l~~L~~L~Ls~N~i~~-  192 (210)
T d1h6ta2         120 EHNGIS-D-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISD-  192 (210)
T ss_dssp             TTSCCC-C-CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB-
T ss_pred             cccccc-c-ccccccccccccccccccccccc--cccccccccccccccccccccc--ccccCCCCCCEEECCCCCCCC-
Confidence            777665 2 23466777778888877777642  3356777888888888877643  247777888888888887774 


Q ss_pred             CCcCccCCCCCCeEeCcC
Q 047977          543 IPAELGNLTRLGVLSLDS  560 (569)
Q Consensus       543 ~~~~l~~l~~L~~L~l~~  560 (569)
                      ++ ++.++++|++|++++
T Consensus       193 l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG-GGTTCTTCSEEEEEE
T ss_pred             Ch-hhcCCCCCCEEEccC
Confidence            33 477788888887764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.4e-15  Score=132.83  Aligned_cols=164  Identities=26%  Similarity=0.334  Sum_probs=83.4

Q ss_pred             CCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEE
Q 047977           43 LSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLD  122 (569)
Q Consensus        43 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  122 (569)
                      +.+|++|++++|.++.. + .+..+++|++|++++|.+....  .++.+++|++|++++|.+. .++ .+..+++|+.++
T Consensus        45 L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc-ccc-cccccccccccc
Confidence            34455555555555422 1 2445555555555555554432  2344555555555555554 222 344555555555


Q ss_pred             cccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcce
Q 047977          123 LSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFT  202 (569)
Q Consensus       123 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  202 (569)
                      ++++.+. .++.  +..++.++.+++.++.+.+  ...+..+++|+.+++++|.+.+.  ..+..+++|++|++++|.++
T Consensus       119 l~~~~~~-~~~~--l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i--~~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         119 LEHNGIS-DING--LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             CTTSCCC-CCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccc-cccc--ccccccccccccccccccc--ccccccccccccccccccccccc--ccccCCCCCCEEECCCCCCC
Confidence            5555543 2221  3455555555555555532  22344455666666666555432  23555666666666666655


Q ss_pred             ecCCccccCCCCCCEEEcc
Q 047977          203 GQIPSSLGQLKNLQHLDLR  221 (569)
Q Consensus       203 ~~~~~~l~~l~~L~~L~l~  221 (569)
                      + ++ .+..+++|++|+++
T Consensus       192 ~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         192 D-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             B-CG-GGTTCTTCSEEEEE
T ss_pred             C-Ch-hhcCCCCCCEEEcc
Confidence            3 22 45666666666664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.8e-15  Score=129.83  Aligned_cols=162  Identities=23%  Similarity=0.311  Sum_probs=89.5

Q ss_pred             cCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCce
Q 047977          356 NLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLIN  435 (569)
Q Consensus       356 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~  435 (569)
                      .++++++|++++|.++..  ..+..+++|++|++++|.+++. + .+..++                         +|+.
T Consensus        38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~-------------------------~L~~   88 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLT-------------------------KLVD   88 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCT-------------------------TCCE
T ss_pred             HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCc-c-cccCCc-------------------------cccc
Confidence            345566666666655421  2244455555555555554421 1 134444                         4555


Q ss_pred             EEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcc
Q 047977          436 VSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHF  515 (569)
Q Consensus       436 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  515 (569)
                      |++++|.+. .++ .+..+++|+.|++++|....  ...+..+++|+.|++++|.+...  ..+..+++|++|++++|++
T Consensus        89 L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l  162 (199)
T d2omxa2          89 ILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQV  162 (199)
T ss_dssp             EECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCC
T ss_pred             ccccccccc-ccc-cccccccccccccccccccc--ccccchhhhhHHhhhhhhhhccc--ccccccccccccccccccc
Confidence            555555443 121 34555666666666665552  22355666777777777766532  2356667777777777766


Q ss_pred             cccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeE
Q 047977          516 IGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVL  556 (569)
Q Consensus       516 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  556 (569)
                      ++.  ..++++++|+.|++++|++++.  ..++++++|++|
T Consensus       163 ~~l--~~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         163 TDL--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             CCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             cCC--ccccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence            543  3466677777777777776642  246666666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2e-16  Score=145.48  Aligned_cols=142  Identities=11%  Similarity=0.098  Sum_probs=73.7

Q ss_pred             CCCCCCEEEccCCc-cccc-CCchhhccCCCCceEEcccCc--Cccc-cChhhhCCCCCcEEEccCC-cceeeCCccccC
Q 047977          404 RLVNLNKFSVFTNN-FSGS-IPGDFGKFSPSLINVSFSNNS--FSGE-LPYELCSGFALEELTVNGN-NFTGSLPACMRN  477 (569)
Q Consensus       404 ~l~~L~~l~l~~~~-~~~~-~~~~~~~~~~~L~~L~l~~~~--~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~  477 (569)
                      .+++|+++++++|. ++.. +...+....+.|+.|+++++.  +++. +......+++|++|++++| .+++.....+..
T Consensus       119 ~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~  198 (284)
T d2astb2         119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ  198 (284)
T ss_dssp             HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred             HHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcc
Confidence            34555555555542 2111 111222333466666666542  2222 2222344677777777776 355455556667


Q ss_pred             CCCCcEEEccCC-ccccchhhhhcCCCCCcEEeCcCCcccccCCcC-cccCCCCCEEECCCCcceecCCcCccC
Q 047977          478 CSNLNRVRFDGN-QFTGNITRAFGVHPRLDFIRLSGNHFIGEISPD-WGECRNLSNLQLDRNKISGGIPAELGN  549 (569)
Q Consensus       478 ~~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~~~~~~~~~l~~  549 (569)
                      +++|++|++++| .+++.....++.+|+|++|++++| +.+..-.. ...+|.|   .+..+.+++..+..++.
T Consensus       199 ~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L---~i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         199 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHL---QINCSHFTTIARPTIGN  268 (284)
T ss_dssp             CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTS---EESCCCSCCTTCSSCSS
T ss_pred             cCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccc---cccCccCCCCCCCccCc
Confidence            777777777775 355555555677777777777776 22111111 2334444   34566666554444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=5.2e-16  Score=133.68  Aligned_cols=171  Identities=18%  Similarity=0.261  Sum_probs=104.7

Q ss_pred             EEEccCCcccccCCccccCCCCCCEEEccCCcccccC-CchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccC
Q 047977          386 AFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSI-PGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNG  464 (569)
Q Consensus       386 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  464 (569)
                      +++.+++.++ .+|..+.  +++++|++++|.+++.. +..|..++ +|+.|++++|.+....+..+..+++|++|++++
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~-~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCc-eEeeeeccccccccccccccccccccceeeecc
Confidence            4555555555 4454442  45666666666665433 33344444 777777777776655556666677777777777


Q ss_pred             CcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCC
Q 047977          465 NNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIP  544 (569)
Q Consensus       465 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~  544 (569)
                      |++....+..|.++++|++|+|++|.++...+++|..+++|++|++++|++.... ....-...++.+.+..+.++...|
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~-~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC-HLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG-GGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc-chHHHhhhhhhhcccCCCeEeCCC
Confidence            7777555666777777777777777777777777777777777777777765221 111111234555566666665455


Q ss_pred             cCccCCCCCCeEeCcCCcCc
Q 047977          545 AELGNLTRLGVLSLDSNELT  564 (569)
Q Consensus       545 ~~l~~l~~L~~L~l~~n~~~  564 (569)
                      ..+   ..++.++++.|.+.
T Consensus       167 ~~l---~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         167 SKV---RDVQIKDLPHSEFK  183 (192)
T ss_dssp             TTT---TTSBGGGSCTTTCC
T ss_pred             hhh---cCCEeeecCHhhCc
Confidence            443   34455666666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.3e-16  Score=143.13  Aligned_cols=213  Identities=15%  Similarity=0.175  Sum_probs=131.0

Q ss_pred             CCCCcEEeccccccccc-CCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCc-cccc-CCccccCCCCCC
Q 047977          309 LTKLQYLFLYRNHFSGP-IPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNN-LSGT-IPPEIGSMASLV  385 (569)
Q Consensus       309 ~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~  385 (569)
                      ..+|++|++++|.++.. +...+..+++|++|++++|.+.+.....+.++++|++|++++|. ++.. +......+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            44667777776665532 22345666777777777776665555566667777777777753 3211 111234567777


Q ss_pred             EEEccCCc-cccc-CCccc-cCCCCCCEEEccCCc--ccccCCchh-hccCCCCceEEcccCc-CccccChhhhCCCCCc
Q 047977          386 AFDVNTNQ-LHGE-LPENI-SRLVNLNKFSVFTNN--FSGSIPGDF-GKFSPSLINVSFSNNS-FSGELPYELCSGFALE  458 (569)
Q Consensus       386 ~L~l~~~~-~~~~-~~~~~-~~l~~L~~l~l~~~~--~~~~~~~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~  458 (569)
                      +|++++|. ++.. +...+ ..++.|+.+.++++.  ++......+ ..++ +|++|++++|. +++.....+.++++|+
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~-~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP-NLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT-TCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccc-cccccccccccCCCchhhhhhcccCcCC
Confidence            77777763 2211 11112 234678888887653  222212222 3344 89999998874 6666677788889999


Q ss_pred             EEEccCC-cceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCccc
Q 047977          459 ELTVNGN-NFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGE  525 (569)
Q Consensus       459 ~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~  525 (569)
                      +|++++| .+++.....+.++++|++|++++|--.+........+|+|+   +..++++...++.++.
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN  268 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred             EEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCCCCccCc
Confidence            9999997 56655566788899999999998832223333345677766   4556666555555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.57  E-value=5.7e-16  Score=147.27  Aligned_cols=136  Identities=19%  Similarity=0.255  Sum_probs=89.3

Q ss_pred             CCCceEEcccCcCccc----cChhhhCCCCCcEEEccCCcceee-----CCccccCCCCCcEEEccCCccccc----hhh
Q 047977          431 PSLINVSFSNNSFSGE----LPYELCSGFALEELTVNGNNFTGS-----LPACMRNCSNLNRVRFDGNQFTGN----ITR  497 (569)
Q Consensus       431 ~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~----~~~  497 (569)
                      +.|+.+.++++.+.+.    +...+..++.|++|++++|.+...     +...+..+++|+.|++++|.++..    +..
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~  237 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  237 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence            3677777777766533    223345567788888888876532     234466778888888888877542    334


Q ss_pred             hhcCCCCCcEEeCcCCcccccCCcC----cc--cCCCCCEEECCCCcceecC----CcCcc-CCCCCCeEeCcCCcCccc
Q 047977          498 AFGVHPRLDFIRLSGNHFIGEISPD----WG--ECRNLSNLQLDRNKISGGI----PAELG-NLTRLGVLSLDSNELTGK  566 (569)
Q Consensus       498 ~l~~l~~L~~L~l~~~~~~~~~~~~----l~--~~~~L~~L~l~~n~~~~~~----~~~l~-~l~~L~~L~l~~n~~~~~  566 (569)
                      .+..++.|++|++++|++.+.....    +.  ..+.|+.|++++|.+....    ..++. +++.|++|++++|++..+
T Consensus       238 ~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            5677888888888888876442222    22  2467888888888876432    23332 467888888888888654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=2.6e-14  Score=112.30  Aligned_cols=118  Identities=16%  Similarity=0.202  Sum_probs=86.4

Q ss_pred             ceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCC
Q 047977          434 INVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGN  513 (569)
Q Consensus       434 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  513 (569)
                      |.|++++|+++ .++ .+..+++|++|++++|+++ .+|..+..+++|+.|++++|.++.. + .++.+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            56888888886 333 4777888888888888887 5677788888888888888888743 3 4778888888888888


Q ss_pred             cccccC-CcCcccCCCCCEEECCCCcceec---CCcCccCCCCCCeE
Q 047977          514 HFIGEI-SPDWGECRNLSNLQLDRNKISGG---IPAELGNLTRLGVL  556 (569)
Q Consensus       514 ~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~---~~~~l~~l~~L~~L  556 (569)
                      ++.+.. ...+..+++|+.|++++|+++..   .....+.+|+|++|
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            887443 24578888888888888887732   12223446777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.2e-14  Score=120.29  Aligned_cols=123  Identities=11%  Similarity=0.068  Sum_probs=72.1

Q ss_pred             CCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCc
Q 047977          432 SLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLS  511 (569)
Q Consensus       432 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  511 (569)
                      .++.|++++|+++ .++.....+++|+.|++++|.+.. + +.+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus        19 ~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          19 RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             SCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             cCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            5556666666655 233333445666666666666662 3 235666667777777776665555555566677777777


Q ss_pred             CCcccccCC-cCcccCCCCCEEECCCCcceecC---CcCccCCCCCCeEe
Q 047977          512 GNHFIGEIS-PDWGECRNLSNLQLDRNKISGGI---PAELGNLTRLGVLS  557 (569)
Q Consensus       512 ~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~---~~~l~~l~~L~~L~  557 (569)
                      +|.+.+... ..+..+++|+.|++++|+++...   +..+..+|+|+.||
T Consensus        96 ~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          96 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            776653211 34666677777777777665321   12355667777665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.50  E-value=4.2e-15  Score=141.13  Aligned_cols=247  Identities=19%  Similarity=0.158  Sum_probs=127.6

Q ss_pred             cCCCCCCcEEEccCCcceee----CCccccCCCCCcEEeccccccccc----------CCccccCCCCCCEEEccCCccc
Q 047977          282 IGNWTELESLQIQNNSFMGN----IPPEIGLLTKLQYLFLYRNHFSGP----------IPSEIGKLTSLEKLDLSGNQLS  347 (569)
Q Consensus       282 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----------~~~~l~~~~~L~~L~l~~~~~~  347 (569)
                      +...+.++.|++++|.+...    +...+...++|+.+.++++.....          +...+..+++|++|++++|.+.
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            34455666666666655332    112344456666666665533211          1122334555555555555544


Q ss_pred             ccc----CcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCC
Q 047977          348 GTI----PPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIP  423 (569)
Q Consensus       348 ~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  423 (569)
                      ...    ...+..+++|++|++++|.+.......+..  .+..         ..........+.++.+.++++.+.....
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~---------~~~~~~~~~~~~L~~l~l~~n~i~~~~~  175 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQE---------LAVNKKAKNAPPLRSIICGRNRLENGSM  175 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHH---------HHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred             cccccchhhhhcccccchheecccccccccccccccc--cccc---------cccccccccCcccceeeccccccccccc
Confidence            321    122234455555555555443110000000  0000         0000011234556666666665543221


Q ss_pred             ----chhhccCCCCceEEcccCcCccc-----cChhhhCCCCCcEEEccCCcceee----CCccccCCCCCcEEEccCCc
Q 047977          424 ----GDFGKFSPSLINVSFSNNSFSGE-----LPYELCSGFALEELTVNGNNFTGS----LPACMRNCSNLNRVRFDGNQ  490 (569)
Q Consensus       424 ----~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~  490 (569)
                          ..+.... .++.|+++.|.+.+.     +...+..+++|+.|++++|.++..    +...+..+++|++|++++|.
T Consensus       176 ~~l~~~l~~~~-~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         176 KEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             HHHHHHHHHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             ccccchhhhhh-hhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc
Confidence                1222333 677777777776532     223455667788888888876532    33456777888888888888


Q ss_pred             cccchhhh----hc--CCCCCcEEeCcCCcccccC----CcCcc-cCCCCCEEECCCCcce
Q 047977          491 FTGNITRA----FG--VHPRLDFIRLSGNHFIGEI----SPDWG-ECRNLSNLQLDRNKIS  540 (569)
Q Consensus       491 ~~~~~~~~----l~--~l~~L~~L~l~~~~~~~~~----~~~l~-~~~~L~~L~l~~n~~~  540 (569)
                      +.+.....    +.  ..+.|++|++++|.+....    ...+. .++.|+.|++++|++.
T Consensus       255 i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         255 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            76543322    33  2467888888888875432    22232 4678888888888876

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=6.2e-14  Score=110.10  Aligned_cols=102  Identities=19%  Similarity=0.221  Sum_probs=53.3

Q ss_pred             EEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCc
Q 047977          459 ELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNK  538 (569)
Q Consensus       459 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~  538 (569)
                      .|++++|+++ .++ .+.++++|++|++++|.+.. +|..++.+++|++|++++|.+++.  ++++.+++|+.|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccccc--CccccccccCeEECCCCc
Confidence            4555555555 232 24555555555555555552 344455555555555555555432  235555555555555555


Q ss_pred             ceecC-CcCccCCCCCCeEeCcCCcCcc
Q 047977          539 ISGGI-PAELGNLTRLGVLSLDSNELTG  565 (569)
Q Consensus       539 ~~~~~-~~~l~~l~~L~~L~l~~n~~~~  565 (569)
                      +++.. ...+..+++|+.|++++|++++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            55322 2344555555555555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.3e-14  Score=117.68  Aligned_cols=113  Identities=18%  Similarity=0.171  Sum_probs=96.7

Q ss_pred             hhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCC
Q 047977          451 LCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLS  530 (569)
Q Consensus       451 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~  530 (569)
                      +....++++|++++|+++ .++..+..+++|+.|++++|.+...  +.++.+++|++|++++|.+....+..++.+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            445678999999999999 5666678899999999999999854  3588999999999999999866555578899999


Q ss_pred             EEECCCCcceecCC-cCccCCCCCCeEeCcCCcCccc
Q 047977          531 NLQLDRNKISGGIP-AELGNLTRLGVLSLDSNELTGK  566 (569)
Q Consensus       531 ~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~  566 (569)
                      .|++++|+++.... ..+..+++|++|++++|+++..
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~  127 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK  127 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccc
Confidence            99999999985432 5688999999999999999753

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.2e-12  Score=104.73  Aligned_cols=104  Identities=14%  Similarity=0.071  Sum_probs=51.1

Q ss_pred             cEEEccCCcceeeCCccccCCCCCcEEEccCC-ccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCC
Q 047977          458 EELTVNGNNFTGSLPACMRNCSNLNRVRFDGN-QFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDR  536 (569)
Q Consensus       458 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  536 (569)
                      +.++.+++.+. ..|..+..+++|++|+++++ .+....+.+|.++++|+.|++++|+++...+.+|..+++|+.|++++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            34444444444 33444455555555555433 24444444455555555555555555544444455555555555555


Q ss_pred             CcceecCCcCccCCCCCCeEeCcCCcC
Q 047977          537 NKISGGIPAELGNLTRLGVLSLDSNEL  563 (569)
Q Consensus       537 n~~~~~~~~~l~~l~~L~~L~l~~n~~  563 (569)
                      |+++...+..+.. .+|++|++++|||
T Consensus        90 N~l~~l~~~~~~~-~~l~~L~L~~Np~  115 (156)
T d2ifga3          90 NALESLSWKTVQG-LSLQELVLSGNPL  115 (156)
T ss_dssp             SCCSCCCSTTTCS-CCCCEEECCSSCC
T ss_pred             CCCcccChhhhcc-ccccccccCCCcc
Confidence            5555333333322 2455555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.27  E-value=4.4e-14  Score=121.35  Aligned_cols=113  Identities=19%  Similarity=0.229  Sum_probs=58.5

Q ss_pred             CCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccC
Q 047977          398 LPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRN  477 (569)
Q Consensus       398 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  477 (569)
                      ++..+..+++|+.|++++|+++.. + .+..+. +|+.|++++|.+. .++.....+++|++|++++|.++. + ..+.+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~-~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~  113 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKI-S-SLSGME-NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEK  113 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCC-C-CHHHHT-TCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHH
T ss_pred             hhhHHhcccccceeECcccCCCCc-c-cccCCc-cccChhhcccccc-cccccccccccccccccccccccc-c-ccccc
Confidence            334455566666666666666532 2 344444 5666666666554 233222333455666666655552 2 23445


Q ss_pred             CCCCcEEEccCCccccchh-hhhcCCCCCcEEeCcCCccc
Q 047977          478 CSNLNRVRFDGNQFTGNIT-RAFGVHPRLDFIRLSGNHFI  516 (569)
Q Consensus       478 ~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~  516 (569)
                      +++|+.|++++|.++.... ..++.+++|++|++++|++.
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            5556666666555553221 34555556666666655554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=4.4e-13  Score=114.98  Aligned_cols=128  Identities=15%  Similarity=0.156  Sum_probs=74.8

Q ss_pred             chhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCC
Q 047977          424 GDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHP  503 (569)
Q Consensus       424 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~  503 (569)
                      ..+..+. +|++|++++|.+.+ ++ .+..+++|+.|++++|.++ .++.....+++|++|++++|.++..  ..+..++
T Consensus        42 ~sl~~L~-~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~  115 (198)
T d1m9la_          42 ATLSTLK-ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLV  115 (198)
T ss_dssp             HHHHHTT-TCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHH
T ss_pred             hHHhccc-ccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccccc
Confidence            3444554 67777777766653 32 3556666777777777665 3444344445667777777666632  2355666


Q ss_pred             CCcEEeCcCCcccccCC-cCcccCCCCCEEECCCCcceecCCcC----------ccCCCCCCeEe
Q 047977          504 RLDFIRLSGNHFIGEIS-PDWGECRNLSNLQLDRNKISGGIPAE----------LGNLTRLGVLS  557 (569)
Q Consensus       504 ~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~----------l~~l~~L~~L~  557 (569)
                      +|++|++++|+++.... ..+..+++|+.|++++|++....+..          +..+|+|++||
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            67777777766653311 34566667777777777665433322          34566666665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1e-10  Score=95.60  Aligned_cols=110  Identities=21%  Similarity=0.083  Sum_probs=70.6

Q ss_pred             CCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCC-ccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcE
Q 047977           18 TLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNN-SLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTH   96 (569)
Q Consensus        18 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   96 (569)
                      .+...+.++.+++.+. ..|..+..+++|++|+++++ .++...+.+|.++++|+.|++++|.+..+...+|..+++|++
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            3344556677766666 45566667777777777654 365555566777777777777777777766667777777777


Q ss_pred             EEcccccccccCCccccCCCCCCEEEcccCccc
Q 047977           97 LSLCYNELTLEFPSFILTCRNLTYLDLSLNKLS  129 (569)
Q Consensus        97 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  129 (569)
                      |++++|.+....+..+. ..+|+.|++++|.+.
T Consensus        85 L~Ls~N~l~~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             eeccCCCCcccChhhhc-cccccccccCCCccc
Confidence            77777777633333333 345777777777653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2.6e-09  Score=87.75  Aligned_cols=82  Identities=23%  Similarity=0.228  Sum_probs=43.4

Q ss_pred             cCCCCCcEEEccCCccccch--hhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCc-------C
Q 047977          476 RNCSNLNRVRFDGNQFTGNI--TRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPA-------E  546 (569)
Q Consensus       476 ~~~~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-------~  546 (569)
                      .+++.|++|++++|.++...  +..++.+++|+.|++++|.+.+..+-.+-....|+.|++++|++......       .
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            44566666666666665422  33455566666666666666533222222334566666666666533221       1


Q ss_pred             ccCCCCCCeEe
Q 047977          547 LGNLTRLGVLS  557 (569)
Q Consensus       547 l~~l~~L~~L~  557 (569)
                      ++.+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            34566666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=5e-08  Score=79.86  Aligned_cols=106  Identities=18%  Similarity=0.072  Sum_probs=72.2

Q ss_pred             CCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccC--CcCcccCCCCCEEE
Q 047977          456 ALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEI--SPDWGECRNLSNLQ  533 (569)
Q Consensus       456 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~  533 (569)
                      ..+.|++++....    ..+..+..+..+....+.. ..++..+..++.|++|++++|++++..  +..++.+++|+.|+
T Consensus        23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~-~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~   97 (162)
T d1koha1          23 SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMA-ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN   97 (162)
T ss_dssp             SSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHH-HHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred             hhCeeecccCCCC----chhhhccchhhcchhhhHh-hhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence            4555666655332    1233333344444443333 244555678999999999999998653  34478899999999


Q ss_pred             CCCCcceecCCcCccCCCCCCeEeCcCCcCccc
Q 047977          534 LDRNKISGGIPAELGNLTRLGVLSLDSNELTGK  566 (569)
Q Consensus       534 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  566 (569)
                      +++|.++...+........|++|++++||+++.
T Consensus        98 Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          98 LSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             CTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             cccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            999999965443444566899999999999864

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.16  E-value=3.8e-07  Score=74.86  Aligned_cols=84  Identities=17%  Similarity=0.218  Sum_probs=39.3

Q ss_pred             CCCceEEcccC-cCccc----cChhhhCCCCCcEEEccCCcceeeC----CccccCCCCCcEEEccCCccccc----hhh
Q 047977          431 PSLINVSFSNN-SFSGE----LPYELCSGFALEELTVNGNNFTGSL----PACMRNCSNLNRVRFDGNQFTGN----ITR  497 (569)
Q Consensus       431 ~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~----~~~  497 (569)
                      +.|++|+++++ .+.+.    +...+...++|++|++++|.+....    ...+...+.|++|+|++|.+...    +..
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            35666666653 33322    1223344455566666555554311    12233445555555555555432    222


Q ss_pred             hhcCCCCCcEEeCcCCc
Q 047977          498 AFGVHPRLDFIRLSGNH  514 (569)
Q Consensus       498 ~l~~l~~L~~L~l~~~~  514 (569)
                      ++...++|++|++++|.
T Consensus        95 aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          95 STLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HTTTTCCCSEEECCCCS
T ss_pred             HHHhCCcCCEEECCCCc
Confidence            34445555555555553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.07  E-value=1.2e-06  Score=71.79  Aligned_cols=110  Identities=11%  Similarity=0.166  Sum_probs=66.4

Q ss_pred             CCCCCcEEEccCC-cceee----CCccccCCCCCcEEEccCCcccc----chhhhhcCCCCCcEEeCcCCcccccC----
Q 047977          453 SGFALEELTVNGN-NFTGS----LPACMRNCSNLNRVRFDGNQFTG----NITRAFGVHPRLDFIRLSGNHFIGEI----  519 (569)
Q Consensus       453 ~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~----  519 (569)
                      ..++|++|+++++ .++..    +...+...++|++|+|++|.+..    .+...+...+.|++|++++|++.+..    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3467777777764 34321    22345566777777777777653    22344556677777777777765432    


Q ss_pred             CcCcccCCCCCEEECCCCcceec-------CCcCccCCCCCCeEeCcCCc
Q 047977          520 SPDWGECRNLSNLQLDRNKISGG-------IPAELGNLTRLGVLSLDSNE  562 (569)
Q Consensus       520 ~~~l~~~~~L~~L~l~~n~~~~~-------~~~~l~~l~~L~~L~l~~n~  562 (569)
                      ..++...++|++|++++|.+...       +..++...++|++|+++.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            22366677777777777754421       23444556777777776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.72  E-value=4.5e-06  Score=68.26  Aligned_cols=87  Identities=14%  Similarity=0.221  Sum_probs=37.4

Q ss_pred             cCCCCCcEEEccCCccccc----hhhhhcCCCCCcEEeCcCCccccc----CCcCcccCCCCCEEECC--CCccee----
Q 047977          476 RNCSNLNRVRFDGNQFTGN----ITRAFGVHPRLDFIRLSGNHFIGE----ISPDWGECRNLSNLQLD--RNKISG----  541 (569)
Q Consensus       476 ~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~--~n~~~~----  541 (569)
                      ...++|++|++++|.+...    +...+...++++.+++++|.+...    +...+...++|+.++|+  +|.+..    
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~  122 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  122 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHH
Confidence            3444555555555544321    122233445555555555544322    12234445555544432  333332    


Q ss_pred             cCCcCccCCCCCCeEeCcCCc
Q 047977          542 GIPAELGNLTRLGVLSLDSNE  562 (569)
Q Consensus       542 ~~~~~l~~l~~L~~L~l~~n~  562 (569)
                      .+..+++..+.|++|+++.+.
T Consensus       123 ~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         123 EIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCCCcCEEeCcCCC
Confidence            122233445555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.56  E-value=1.5e-05  Score=65.10  Aligned_cols=109  Identities=15%  Similarity=0.215  Sum_probs=65.8

Q ss_pred             CCCceEEccc-CcCccc----cChhhhCCCCCcEEEccCCcceee----CCccccCCCCCcEEEccCCccccc----hhh
Q 047977          431 PSLINVSFSN-NSFSGE----LPYELCSGFALEELTVNGNNFTGS----LPACMRNCSNLNRVRFDGNQFTGN----ITR  497 (569)
Q Consensus       431 ~~L~~L~l~~-~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~  497 (569)
                      |.|++|++++ +.+++.    +...+...+.|++|++++|.++..    +...+...++++.+++++|.+...    +..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            3666666665 334332    223444567777777777766542    223455667788888888777532    335


Q ss_pred             hhcCCCCCcEEeCc--CCcccc----cCCcCcccCCCCCEEECCCCcc
Q 047977          498 AFGVHPRLDFIRLS--GNHFIG----EISPDWGECRNLSNLQLDRNKI  539 (569)
Q Consensus       498 ~l~~l~~L~~L~l~--~~~~~~----~~~~~l~~~~~L~~L~l~~n~~  539 (569)
                      .+...++|++++|.  +|++.+    .+...+..++.|+.|+++.+..
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            56677888876554  445543    2333456788888888877654