Citrus Sinensis ID: 047983

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ
Secondary Structure (PSIPRED)
cHHHHHHHHcccEEEEcccccccccccccccccccccccccEEEEcccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccccccccccccccccccccHHHHHHHHHHHccEEEEccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccEEEEEHHHHHHHEEccccEEEEEEEcccccEEEEEcccHcEcccccEEEEEEccccHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEcccHHHHccccccccccccccccHHHHHHHHHHccEEEEEcccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
FCIEETTKKLGIMVIADEVYghlvfgnthfvpmgvfgsIVPVltlgsiskrwivpgwrlgwlvtsdpngilqDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCdrlkeipcitcpkkpegsmfvmycgsedkcLLKLNYSLLEGINSDTEFALKLAKeesiivlpgitvgLKDWLRITfavepsafeIGLGRMKAFYYRHAKKQ
Flexible Loop (DISEMBL)
fcieettkklgIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ
Low Complexity Region (SEG)
FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ
Disordered region (IsUnstruct)
******TKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYR*****
Disordered Region (DISOPRED)
FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRH****
Disordered Region (DISEMBL)
FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ
Disordered Region (DISPRO)
FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHA***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
Q9FN30	414	Probable aminotransferase	yes	no	0.918	0.516	0.547	5e-66
Q9LVY1	420	Tyrosine aminotransferase	no	no	0.922	0.511	0.523	8e-61
Q9ST03	551	Nicotianamine aminotransf	N/A	no	0.922	0.390	0.497	4e-60
Q9ST02	461	Nicotianamine aminotransf	N/A	no	0.922	0.466	0.489	5e-58
Q9SIV0	462	S-alkyl-thiohydroximate l	no	no	0.918	0.463	0.460	3e-55
Q9SK47	445	Probable aminotransferase	no	no	0.905	0.474	0.436	9e-53
Q67Y55	449	Probable aminotransferase	no	no	0.918	0.476	0.465	1e-52
Q9SUR6	422	Cystine lyase CORI3 OS=Ar	no	no	0.918	0.507	0.409	2e-42
Q8VYP2	424	Probable aminotransferase	no	no	0.888	0.488	0.426	6e-42
Q8QZR1	454	Tyrosine aminotransferase	yes	no	0.841	0.431	0.279	3e-23

>sp|Q9FN30|TAT2_ARATH Probable aminotransferase TAT2 OS=Arabidopsis thaliana GN=At5g53970 PE=2 SV=1

 Score =  250 bits (639), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 127/232 (54%), Positives = 157/232 (67%), Gaps = 18/232 (7%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           I E+ KKLG +VIADEVYGHL FG+  FVPMGVFGSIVPVLTLGS+SKRWIVPGWRLGW 
Sbjct: 196 IAESAKKLGFLVIADEVYGHLAFGSKPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWF 255

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKIT 121
           VT+DP+G  +D  +          R   Y  +L         AVP ILE+T+E FF K  
Sbjct: 256 VTTDPSGSFKDPKII--------ERFKKYFDILGGPATFIQAAVPTILEQTDESFFKKTL 307

Query: 122 DILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFA 181
           + L+ ++DICCD +KEIPCI    +PEGSM +M         +KLN SLLE ++ D +F 
Sbjct: 308 NSLKNSSDICCDWIKEIPCIDSSHRPEGSMAMM---------VKLNLSLLEDVSDDIDFC 358

Query: 182 LKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ 233
            KLA+EES+I+LPG  VGLK+WLRITFA + ++ E    R+K FY RHAK Q
Sbjct: 359 FKLAREESVILLPGTAVGLKNWLRITFAADATSIEEAFKRIKCFYLRHAKTQ 410

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q9LVY1|TAT_ARATH Tyrosine aminotransferase OS=Arabidopsis thaliana GN=TAT PE=2 SV=1

 Score =  233 bits (594), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 121/231 (52%), Positives = 152/231 (65%), Gaps = 16/231 (6%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           I ET  KLGI+VIADEVY H  FG+  FV M  F  +VPV+ LG+ISKRW VPGWRLGW+
Sbjct: 205 IAETACKLGILVIADEVYDHFAFGDKPFVSMAEFAELVPVIVLGAISKRWFVPGWRLGWM 264

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
           VT DP+GI++D G        +NM  D    +        GA+P I+  T+EEFFS   +
Sbjct: 265 VTLDPHGIMKDSGFVQTLINVVNMSTDPATFIQ-------GAMPDIIGNTKEEFFSSKLE 317

Query: 123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
           ++++ A+IC + L +IPCITCP KPEGSMF M         +KLN+SLLE I+ D +F  
Sbjct: 318 MVKKCAEICYEELMKIPCITCPCKPEGSMFTM---------VKLNFSLLEDISDDLDFCS 368

Query: 183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ 233
           KLAKEES+I+LPG  VGLK+WLRITFAVE      G  R+K F  RH+K Q
Sbjct: 369 KLAKEESMIILPGQAVGLKNWLRITFAVELELLIEGFSRLKNFTERHSKNQ 419

Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. Can catalyze the reverse reaction, using L-glutamate in vitro. Can convert phenylalanine to phenylpyruvate and catalyze the reverse reaction in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 5

>sp|Q9ST03|NAATB_HORVU Nicotianamine aminotransferase B OS=Hordeum vulgare GN=naat-B PE=1 SV=2

 Score =  231 bits (588), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 115/231 (49%), Positives = 155/231 (67%), Gaps = 16/231 (6%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           + E  K+LGI+VIADEVYG LV G+  F+PMGVFG I PVL++GS+SK WIVPGWRLGW+
Sbjct: 332 VAEVAKRLGILVIADEVYGKLVLGSAPFIPMGVFGHITPVLSIGSLSKSWIVPGWRLGWV 391

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
              DP  ILQ+  ++   +  LN+  D    +         A+PQILE T+E+FF  I  
Sbjct: 392 AVYDPRKILQETKISTSITNYLNVSTDPATFIQ-------AALPQILENTKEDFFKAIIG 444

Query: 123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
           +L+E+++IC  ++KE   ITCP KPEGSMFVM         +KLN  LLE I+ D +F  
Sbjct: 445 LLKESSEICYKQIKENKYITCPHKPEGSMFVM---------VKLNLHLLEEIDDDIDFCC 495

Query: 183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ 233
           KLAKEES+I+ PG  +G+ +W+RITFA  PS+ + GLGR+K+F  R+ K+ 
Sbjct: 496 KLAKEESVILCPGSVLGMANWVRITFACVPSSLQDGLGRIKSFCQRNKKRN 546

Involved in biosynthesis of mugineic acid family phytosiderophores.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 8

EC: 0

>sp|Q9ST02|NAATA_HORVU Nicotianamine aminotransferase A OS=Hordeum vulgare GN=naat-A PE=1 SV=2

 Score =  224 bits (570), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 113/231 (48%), Positives = 154/231 (66%), Gaps = 16/231 (6%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           + E  +KLGI+VIADEVYG LV G+  F+PMGVFG I PVL++GS+SK WIVPGWRLGW+
Sbjct: 242 VAEVARKLGILVIADEVYGKLVLGSAPFIPMGVFGHIAPVLSIGSLSKSWIVPGWRLGWV 301

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
              DP  IL+   ++   +  LN+  D    + E       A+P+ILE T+ +FF +I  
Sbjct: 302 AVYDPTKILEKTKISTSITNYLNVSTDPATFVQE-------ALPKILENTKADFFKRIIG 354

Query: 123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
           +L+E+++IC   +KE   ITCP KPEGSMFVM         +KLN  LLE I+ D +F  
Sbjct: 355 LLKESSEICYREIKENKYITCPHKPEGSMFVM---------VKLNLHLLEEIHDDIDFCC 405

Query: 183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ 233
           KLAKEES+I+ PG  +G+++W+RITFA  PS+ + GL R+K+F  R+ KK 
Sbjct: 406 KLAKEESVILCPGSVLGMENWVRITFACVPSSLQDGLERVKSFCQRNKKKN 456

Involved in biosynthesis of mugineic acid family phytosiderophores.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 8

EC: 0

>sp|Q9SIV0|SUR1_ARATH S-alkyl-thiohydroximate lyase SUR1 OS=Arabidopsis thaliana GN=SUR1 PE=1 SV=1

 Score =  214 bits (546), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 106/230 (46%), Positives = 143/230 (62%), Gaps = 16/230 (6%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           + ET +KLGIMVI+DEVY   +FG+  FV MG F SIVPVLTL  ISK W+VPGW++GW+
Sbjct: 229 VAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWI 288

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
             +DP G+ +   V    SI  N+      +  +       A+P ILEK ++ FF+K   
Sbjct: 289 ALNDPEGVFETTKV--LQSIKQNLD-----VTPDPATIIQAALPAILEKADKNFFAKKNK 341

Query: 123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
           IL+   D+ CDRLK+IPC+ CPKKPE   ++         L KL  SL++ I  D +F +
Sbjct: 342 ILKHNVDLVCDRLKDIPCVVCPKKPESCTYL---------LTKLELSLMDNIKDDIDFCV 392

Query: 183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKK 232
           KLA+EE+++ LPG  +GLK+W+RIT  VE    E  L R+K F  RHAKK
Sbjct: 393 KLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDALERLKGFCTRHAKK 442

C-S lyase involved in glucosinolate biosynthesis. Converts S-(alkylacetohydroximoyl)-L-cysteine to thiohydroximate. Functions in auxin homeostasis. Probably required for glucosinolate activation in response to pathogens.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SK47|TAT3_ARATH Probable aminotransferase TAT3 OS=Arabidopsis thaliana GN=TAT3 PE=2 SV=1

 Score =  206 bits (525), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 100/229 (43%), Positives = 144/229 (62%), Gaps = 18/229 (7%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           + E  +KLGIM+I+DEVY H+V+G+  F+PMG F SI PV+TLGSISK W+ PGWR+GW+
Sbjct: 213 VAEMARKLGIMIISDEVYDHVVYGDKPFIPMGKFASIAPVITLGSISKGWVNPGWRVGWI 272

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKIT 121
             +DPNGI    GV           ++D+L L  +  +    A+P ILEKT +EFF K  
Sbjct: 273 AMNDPNGIFVSTGVV--------QAIEDFLDLTPQPSFILQEALPDILEKTPKEFFEKKI 324

Query: 122 DILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFA 181
             +R   ++ C+RLK+IPC+ CPKKPE   ++          LKL+ S+L  I +D +F 
Sbjct: 325 KAMRRNVELSCERLKDIPCLFCPKKPESCSYLW---------LKLDTSMLNNIKNDFDFC 375

Query: 182 LKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHA 230
            KL  EES+I++PG+ +G ++W+RI+   + S  +    R+K FY RHA
Sbjct: 376 TKLVSEESLILIPGVALGAENWVRISIGTDESVVQEIFDRLKGFYDRHA 424

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q67Y55|TAT1_ARATH Probable aminotransferase TAT1 OS=Arabidopsis thaliana GN=At4g28420 PE=2 SV=1

 Score =  206 bits (523), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/230 (46%), Positives = 143/230 (62%), Gaps = 16/230 (6%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           + ET KKLGIMVI DEVY   +FG+  FVPMG F SI PV+TLG ISK WIVPGWR+GW+
Sbjct: 223 VAETAKKLGIMVITDEVYCQTIFGDKPFVPMGEFSSITPVITLGGISKGWIVPGWRIGWI 282

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
             +DP GIL+  G     SI  N+      +  ++      A+P+IL K  +E F+K   
Sbjct: 283 ALNDPRGILKSTG--MVQSIQQNLD-----ITPDATTIVQAALPEILGKANKELFAKKNS 335

Query: 123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
           +L++  ++ CDRLKEIPC+ C KKPE   +++          KL   LLE I  D +F +
Sbjct: 336 MLKQNVELVCDRLKEIPCLVCNKKPESCTYLL---------TKLKLPLLEDIEDDMDFCM 386

Query: 183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKK 232
           KLAKEE++++LPG+ +GLK+W+RIT  VE    E  L R+  F  RH KK
Sbjct: 387 KLAKEENLVLLPGVALGLKNWIRITIGVEAQMLEDALERLNGFCKRHLKK 436

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SUR6|CORI3_ARATH Cystine lyase CORI3 OS=Arabidopsis thaliana GN=CORI3 PE=1 SV=1

 Score =  172 bits (436), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/232 (40%), Positives = 133/232 (57%), Gaps = 18/232 (7%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           + E  K+L IMV++DEV+   +FG+  FVPMG F SIVPV+TLGSISK W VPGWR GWL
Sbjct: 198 LAELAKELKIMVVSDEVFRWTLFGSNPFVPMGKFSSIVPVVTLGSISKGWKVPGWRTGWL 257

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKIT 121
              D +G+        F +  +     D+L ++ +  T +  A+P ILEKT +EFF K  
Sbjct: 258 TLHDLDGV--------FRNTKVLQAAQDFLQINNNPPTVIQAAIPDILEKTPQEFFDKRQ 309

Query: 122 DILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFA 181
             L++  +    +LK IP +TC  KPE   F+           +L+ S    I  D +F 
Sbjct: 310 SFLKDKVEFGYSKLKYIPSLTCYMKPEACTFLW---------TELDLSSFVDIEDDQDFC 360

Query: 182 LKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ 233
            KLAKEE+++VLPGI    K+WLR +  +E    E  L R+K+F  RH+ K+
Sbjct: 361 NKLAKEENLVVLPGIAFSQKNWLRHSIDMETPVLEDALERLKSFCDRHSNKK 412

Possesses cystine lyase and tyrosine aminotransferase activities in vitro. May be required for the synthesis of homogentisate a precursor of tocopherols and plastoquinones.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q8VYP2|TAT4_ARATH Probable aminotransferase TAT4 OS=Arabidopsis thaliana GN=At4g23590 PE=2 SV=1

 Score =  171 bits (432), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 96/225 (42%), Positives = 128/225 (56%), Gaps = 18/225 (8%)

Query: 7   TKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 66
            ++LGIMV++DEVY   VFG+  FVPMG F SIVPV+TLGSISK WIVPGWR GWL   D
Sbjct: 202 ARELGIMVVSDEVYRWSVFGSNPFVPMGKFSSIVPVITLGSISKGWIVPGWRTGWLALHD 261

Query: 67  PNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILR 125
            NG+        F S  +     ++L ++    T +  A+P ILEKT ++FF K    L+
Sbjct: 262 LNGV--------FRSTKVLKAAKEFLEITSKPPTVIQAAIPTILEKTPQDFFEKRGIFLK 313

Query: 126 EAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLA 185
           +  D    +LK IP +TC  KPE   F+           KL+      I  D +F  KLA
Sbjct: 314 DKVDFGYSKLKNIPTLTCYMKPESCTFLW---------TKLDPLHFVDIEDDHDFCRKLA 364

Query: 186 KEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHA 230
           KEE+++VLPGI  G  +WLR +  +E    E    R+K+F  RH+
Sbjct: 365 KEENLVVLPGIAFGQNNWLRHSIDMETPRLEDAFERLKSFCERHS 409

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8QZR1|ATTY_MOUSE Tyrosine aminotransferase OS=Mus musculus GN=Tat PE=1 SV=1

 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 26/222 (11%)

Query: 12  IMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL 71
           + ++ADE+YG +VF +  + PM    + VP+L+ G ++KRW+VPGWRLGW++  D   I 
Sbjct: 242 VPILADEIYGDMVFSDCKYEPMATLSTNVPILSCGGLAKRWLVPGWRLGWILIHDRRDIF 301

Query: 72  QDLGVAFFHSISLNMRMDDYLLLSESVYTTV----GAVPQILEKTEEEFFSKITDILREA 127
                        N   D  + LS+ +        GA+  IL++T +EF+      L+  
Sbjct: 302 G------------NEIRDGLVKLSQRILGPCTIVQGALKSILQRTPQEFYQDTLSFLKSN 349

Query: 128 ADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKE 187
           AD+C   L  IP +  P +P G+M++M         + +         +D EF  +L  E
Sbjct: 350 ADLCYGALSAIPGLQ-PVRPSGAMYLM---------VGIEMEHFPEFENDVEFTERLIAE 399

Query: 188 ESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRH 229
           +S+  LP       ++ R+   V          R++ F  +H
Sbjct: 400 QSVHCLPATCFEYPNFFRVVITVPEVMMLEACSRIQEFCEQH 441

Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. Can catalyze the reverse reaction, using glutamic acid, with 2-oxoglutarate as cosubstrate (in vitro). Has no transaminase activity towards phenylalanine.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
224133454	418	aminotransferase family protein [Populus	0.922	0.514	0.649	7e-80
224100097	289	aminotransferase family protein [Populus	0.918	0.740	0.637	5e-78
255553657	419	tyrosine aminotransferase, putative [Ric	0.922	0.513	0.636	1e-77
224133458	418	aminotransferase family protein [Populus	0.914	0.509	0.623	2e-76
225446437	419	PREDICTED: tyrosine aminotransferase [Vi	0.922	0.513	0.614	4e-76
224133450	417	aminotransferase family protein [Populus	0.914	0.510	0.593	9e-74
225446431	419	PREDICTED: tyrosine aminotransferase [Vi	0.922	0.513	0.614	1e-73
224092914	419	aminotransferase family protein [Populus	0.918	0.510	0.621	2e-73
147844187	424	hypothetical protein VITISV_034250 [Viti	0.922	0.507	0.614	6e-73
325516250	422	tyrosine aminotransferase 2 [Solanum pen	0.922	0.509	0.593	8e-73

>gi|224133454|ref|XP_002328046.1| aminotransferase family protein [Populus trichocarpa] gi|222837455|gb|EEE75834.1| aminotransferase family protein [Populus trichocarpa]

 Score =  302 bits (774), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 150/231 (64%), Positives = 178/231 (77%), Gaps = 16/231 (6%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           I ET +KLGIMVIADEVYGHL FGN+ FVPMGVFGSIVPVLTLGSISKRWIVPGWR+GWL
Sbjct: 204 IAETARKLGIMVIADEVYGHLTFGNSPFVPMGVFGSIVPVLTLGSISKRWIVPGWRIGWL 263

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
           VTSDPNGILQ+ GV       LN+  D    +        GA+PQI++ T E+FF+KI +
Sbjct: 264 VTSDPNGILQESGVVESIKGCLNISSDPVTFIQ-------GAIPQIIDNTTEDFFTKINN 316

Query: 123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
           ILREAADIC +++++IPCIT P KPEGSMFVM         +KLN S LEGI  D +F L
Sbjct: 317 ILREAADICYEKIQDIPCITLPHKPEGSMFVM---------VKLNLSSLEGIGDDMDFCL 367

Query: 183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ 233
           KLAKEES+++LPG  VG+K++LRITFA+EPSA E+GL R+KAFY RHAK Q
Sbjct: 368 KLAKEESVMILPGTAVGMKNFLRITFAIEPSALEVGLERLKAFYERHAKIQ 418

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100097|ref|XP_002334409.1| aminotransferase family protein [Populus trichocarpa] gi|222872039|gb|EEF09170.1| aminotransferase family protein [Populus trichocarpa]

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 148/232 (63%), Positives = 177/232 (76%), Gaps = 18/232 (7%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           + ET +KLGIMVI+DEVYGHL FG+  FVPMGVF S VPVLTLGSISKRWIVPGWR+GWL
Sbjct: 75  VAETARKLGIMVISDEVYGHLTFGSAPFVPMGVFASTVPVLTLGSISKRWIVPGWRMGWL 134

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKIT 121
           VT+DPNGILQD G+           + DYL +S    T +  AVPQI+E T++ FFSKI 
Sbjct: 135 VTNDPNGILQDSGIV--------ASIKDYLNISSDPPTFIQAAVPQIIENTKDGFFSKIN 186

Query: 122 DILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFA 181
           +IL EAADIC  ++++IPCI CP KPEGSMFVM         +KLN +LLEGI+ D +F 
Sbjct: 187 NILGEAADICYGKIQDIPCIICPHKPEGSMFVM---------VKLNLTLLEGIDDDVDFC 237

Query: 182 LKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ 233
           LKLAKEES++VLPGI VG+K+WLRITFA+EPSA E+GL R+K F  RHAKKQ
Sbjct: 238 LKLAKEESVMVLPGIAVGMKNWLRITFAIEPSALEVGLERLKVFCQRHAKKQ 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553657|ref|XP_002517869.1| tyrosine aminotransferase, putative [Ricinus communis] gi|223542851|gb|EEF44387.1| tyrosine aminotransferase, putative [Ricinus communis]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 147/231 (63%), Positives = 177/231 (76%), Gaps = 16/231 (6%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           I ET +KLGI+VIADEVY HL FG+T FVPMGVFGS+VPVLTLGSISKRWIVPGWRLGWL
Sbjct: 205 IAETARKLGILVIADEVYAHLTFGSTPFVPMGVFGSVVPVLTLGSISKRWIVPGWRLGWL 264

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
           V SDP GILQ+ GV    +  LN+  D    +        GA+PQIL  T+++FF KI +
Sbjct: 265 VLSDPKGILQETGVVDSITSCLNISSDPATFIQ-------GAIPQILTNTKKDFFFKINN 317

Query: 123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
           +L+EAA++C DR+++IPCITC +KPEGSMF+M          KLN S L+GI  D +F L
Sbjct: 318 LLQEAAELCYDRIQDIPCITCLRKPEGSMFLMA---------KLNLSSLKGIEDDMDFCL 368

Query: 183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ 233
           KLAKEES+IVLPGITVGLK+WLRITFA+E S  E+GLGR++AFY RHAKKQ
Sbjct: 369 KLAKEESVIVLPGITVGLKNWLRITFAIELSTLEVGLGRIRAFYERHAKKQ 419

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133458|ref|XP_002328047.1| aminotransferase family protein [Populus trichocarpa] gi|222837456|gb|EEE75835.1| aminotransferase family protein [Populus trichocarpa]

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 144/231 (62%), Positives = 174/231 (75%), Gaps = 18/231 (7%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           + ET + LGIMVI+DEVYGHL FG+  FVPMGVF S VPVLTLGSISKRWIVPGWR+GWL
Sbjct: 205 VAETARMLGIMVISDEVYGHLTFGSAPFVPMGVFASTVPVLTLGSISKRWIVPGWRMGWL 264

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKIT 121
           VT+DPNGILQD G+           + DYL +S    T +  AVPQI+E T++ FFSKI 
Sbjct: 265 VTNDPNGILQDSGIV--------ASIKDYLNISSDPPTFIQAAVPQIIENTKDGFFSKIN 316

Query: 122 DILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFA 181
           +IL EAADIC  ++++IPCI CP KPEGSMFVM         +KLN +LLEGI+ D +F 
Sbjct: 317 NILGEAADICYGKIQDIPCIICPHKPEGSMFVM---------VKLNLTLLEGIDDDVDFC 367

Query: 182 LKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKK 232
           LKLAKEES++VLPGI VG+K+WLRITFA+EPSA E+G  R+K F  RHAK+
Sbjct: 368 LKLAKEESVMVLPGIAVGMKNWLRITFAIEPSALEVGFERLKVFCQRHAKQ 418

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446437|ref|XP_002276551.1| PREDICTED: tyrosine aminotransferase [Vitis vinifera] gi|302143331|emb|CBI21892.3| unnamed protein product [Vitis vinifera]

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 142/231 (61%), Positives = 174/231 (75%), Gaps = 16/231 (6%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           + ET + LGIMVI+DEVYGHL FG+  FVPMGVFGSIVP++T+GSISKRW+VPGWRLGWL
Sbjct: 205 VAETARNLGIMVISDEVYGHLAFGSKPFVPMGVFGSIVPIVTVGSISKRWVVPGWRLGWL 264

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
           VT+D NGIL   GV       LN+  D    +        GA+P+ILEKT+E+FFS    
Sbjct: 265 VTNDLNGILHKSGVVESIISCLNISSDPATFIQ-------GAIPEILEKTKEDFFSNTIS 317

Query: 123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
           ILRE ADI  DR+K IPCITCP+KPEGSMFVM         +KLN SLLE I+ D EF +
Sbjct: 318 ILRECADIIHDRIKGIPCITCPQKPEGSMFVM---------VKLNLSLLEDIDDDVEFCM 368

Query: 183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ 233
           KL+KEES+IVLPG++VG+K+WLR+TFA++P + E GLGR+KAFY RHAKK+
Sbjct: 369 KLSKEESVIVLPGVSVGMKNWLRVTFAIDPPSLEDGLGRIKAFYQRHAKKE 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133450|ref|XP_002328045.1| aminotransferase family protein [Populus trichocarpa] gi|222837454|gb|EEE75833.1| aminotransferase family protein [Populus trichocarpa]

 Score =  282 bits (721), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 137/231 (59%), Positives = 171/231 (74%), Gaps = 18/231 (7%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           + ET +KLGI VIADEVYGH+ FG+  +VPMG FGSIVPVL+LGSISKRWIVPGWRLGW+
Sbjct: 204 VAETARKLGIFVIADEVYGHIAFGSNPYVPMGEFGSIVPVLSLGSISKRWIVPGWRLGWI 263

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKIT 121
            T DPNGIL+  G+           +  Y  +S +  T V  A+PQI EKT+E+FFSK  
Sbjct: 264 ATCDPNGILKKYGIV--------DSIKSYFNISSNPATFVQAAIPQIFEKTKEDFFSKTI 315

Query: 122 DILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFA 181
           +I+REAADIC ++ KEIPC+TCP KP+GSMF M         +KLN SLLE I+ D +F 
Sbjct: 316 NIMREAADICYEKTKEIPCVTCPHKPDGSMFAM---------VKLNLSLLEDISDDMDFC 366

Query: 182 LKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKK 232
           LKLA+EES+I+LPG+ VGLK+WLRITF++EP + E GL RMKAF  RH++K
Sbjct: 367 LKLAREESVIILPGVAVGLKNWLRITFSIEPQSLEQGLDRMKAFCQRHSRK 417

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446431|ref|XP_002275047.1| PREDICTED: tyrosine aminotransferase [Vitis vinifera] gi|302143327|emb|CBI21888.3| unnamed protein product [Vitis vinifera]

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 142/231 (61%), Positives = 170/231 (73%), Gaps = 16/231 (6%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           + ET + LGI+VIADEVYGHLVFG+  +VPMGVFGSI PV+TLGSISKRWIVPGWRLGWL
Sbjct: 205 VAETARMLGILVIADEVYGHLVFGSNPYVPMGVFGSITPVITLGSISKRWIVPGWRLGWL 264

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
           VT+DPNGIL   GV      SLN+  D    +        GAVPQI+EKT ++FFS+I  
Sbjct: 265 VTNDPNGILCKSGVVETIVSSLNICTDPATFIH-------GAVPQIIEKTTDDFFSRIIG 317

Query: 123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
           +LR+ ADIC D L +IPCITCP KPEG+M VM         + LN SLLE I  D +F +
Sbjct: 318 LLRKTADICFDGLADIPCITCPHKPEGAMSVM---------VNLNVSLLEDIEDDMDFCV 368

Query: 183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ 233
           KL+KEES+I+LPG TVG+++WLRITFA EP + E GLGR+KAF  RHAKKQ
Sbjct: 369 KLSKEESVIILPGFTVGMENWLRITFATEPPSLEDGLGRIKAFCQRHAKKQ 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092914|ref|XP_002309751.1| aminotransferase family protein [Populus trichocarpa] gi|222852654|gb|EEE90201.1| aminotransferase family protein [Populus trichocarpa]

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 143/230 (62%), Positives = 172/230 (74%), Gaps = 16/230 (6%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           I ET +KLGI+V+ADEVYGH+VFG+  FVPMGVFGS VPV+TLGSISKRW+VPGWRLGWL
Sbjct: 205 IAETARKLGILVVADEVYGHIVFGSKPFVPMGVFGSTVPVITLGSISKRWMVPGWRLGWL 264

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
           VTSDP G+LQ  G+A     +LN        +         AVP+ILEKT EEFFSK  +
Sbjct: 265 VTSDPTGLLQICGIADSIKSALNPAPFSPTFIQ-------AAVPEILEKTTEEFFSKTIN 317

Query: 123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
           ILR A+  C D+LKEIPCITCP++ EG+MFV         L+KLN SLLE I  D EF L
Sbjct: 318 ILRAASAFCYDKLKEIPCITCPQRAEGAMFV---------LVKLNLSLLEDIEDDMEFCL 368

Query: 183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKK 232
           KLAKEES+++LPG+TVGLK+WLRITF+VE S+ E GLGR+++F  RHAKK
Sbjct: 369 KLAKEESLVILPGVTVGLKNWLRITFSVEQSSLEDGLGRLRSFCGRHAKK 418

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147844187|emb|CAN80557.1| hypothetical protein VITISV_034250 [Vitis vinifera]

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 142/231 (61%), Positives = 169/231 (73%), Gaps = 16/231 (6%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           + ET + LGI+VIADEVYGHLVFG+  +VPMGVFGSI PV+TLGSISKRWIVPGWRLGWL
Sbjct: 210 VAETARMLGILVIADEVYGHLVFGSNPYVPMGVFGSITPVITLGSISKRWIVPGWRLGWL 269

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
           VT+DPNGIL   GV      SLN+  D    +        GAVPQI+EKT ++FFS+I  
Sbjct: 270 VTNDPNGILCKSGVVETIVSSLNICTDPATFIX-------GAVPQIIEKTTDDFFSRIIG 322

Query: 123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
           +LR+ ADIC D L +IPCITCP KPEG+M VM         + LN SLLE I  D +F +
Sbjct: 323 LLRKTADICFDGLADIPCITCPHKPEGAMSVM---------VNLNVSLLEDIEDDMDFCV 373

Query: 183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ 233
           KL+KEES+I+LPG TVG+K+WLRITFA E  + E GLGR+KAF  RHAKKQ
Sbjct: 374 KLSKEESVIILPGFTVGMKNWLRITFATEXPSLEDGLGRIKAFCQRHAKKQ 424

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|325516250|gb|ADZ24703.1| tyrosine aminotransferase 2 [Solanum pennellii]

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 137/231 (59%), Positives = 171/231 (74%), Gaps = 16/231 (6%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           + ET +KLGI+VI+DEVY HL FG+  FVPMG+FGSI PV+TLGSISKRWIVPGWRLGWL
Sbjct: 208 VAETARKLGILVISDEVYAHLAFGSKPFVPMGIFGSIAPVVTLGSISKRWIVPGWRLGWL 267

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
           VT+DPNGIL++ G        LN+  D    +        GA+PQIL +T+++FFSKI +
Sbjct: 268 VTNDPNGILKEHGDIDSIMGYLNISTDPATFIQ-------GAIPQILHETKDDFFSKIVN 320

Query: 123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
           +LRE ADIC +R+K+IPCITCP KP+GSMF+M         ++L+ +LLE I  D +F  
Sbjct: 321 MLREDADICYERIKDIPCITCPSKPQGSMFLM---------VQLHLNLLEDIEDDLDFCA 371

Query: 183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ 233
           KLAKEES+I+LPG+ VGLK+WLRITFA EPS  E G  R+ AFY RHAKKQ
Sbjct: 372 KLAKEESLIILPGVAVGLKNWLRITFACEPSYLEDGFQRLNAFYKRHAKKQ 422

Source: Solanum pennellii

Species: Solanum pennellii

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TAIR|locus:2154714	414	TAT7 "tyrosine aminotransferas	0.918	0.516	0.547	3.1e-60
TAIR|locus:2158926	420	AT5G36160 [Arabidopsis thalian	0.922	0.511	0.523	2e-56
UNIPROTKB|Q9ST03	551	naat-B "Nicotianamine aminotra	0.914	0.386	0.510	3.7e-55
UNIPROTKB|Q9ST02	461	naat-A "Nicotianamine aminotra	0.918	0.464	0.491	2.4e-53
TAIR|locus:2121407	449	AT4G28420 [Arabidopsis thalian	0.918	0.476	0.473	5.6e-52
TAIR|locus:2046056	462	SUR1 "SUPERROOT 1" [Arabidopsi	0.918	0.463	0.465	5.1e-51
TAIR|locus:2121382	447	AT4G28410 [Arabidopsis thalian	0.918	0.478	0.456	7.4e-50
TAIR|locus:2047441	445	TAT3 "tyrosine aminotransferas	0.905	0.474	0.436	3.2e-49
TAIR|locus:2128459	422	CORI3 "CORONATINE INDUCED 1" [	0.918	0.507	0.409	6.8e-40
TAIR|locus:2128434	424	AT4G23590 [Arabidopsis thalian	0.884	0.485	0.428	1.1e-39

TAIR|locus:2154714 TAT7 "tyrosine aminotransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 127/232 (54%), Positives = 158/232 (68%)

Query:     3 IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
             I E+ KKLG +VIADEVYGHL FG+  FVPMGVFGSIVPVLTLGS+SKRWIVPGWRLGW 
Sbjct:   196 IAESAKKLGFLVIADEVYGHLAFGSKPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWF 255

Query:    63 VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKIT 121
             VT+DP+G  +D  +          R   Y  +     T +  AVP ILE+T+E FF K  
Sbjct:   256 VTTDPSGSFKDPKII--------ERFKKYFDILGGPATFIQAAVPTILEQTDESFFKKTL 307

Query:   122 DILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFA 181
             + L+ ++DICCD +KEIPCI    +PEGSM +M         +KLN SLLE ++ D +F 
Sbjct:   308 NSLKNSSDICCDWIKEIPCIDSSHRPEGSMAMM---------VKLNLSLLEDVSDDIDFC 358

Query:   182 LKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ 233
              KLA+EES+I+LPG  VGLK+WLRITFA + ++ E    R+K FY RHAK Q
Sbjct:   359 FKLAREESVILLPGTAVGLKNWLRITFAADATSIEEAFKRIKCFYLRHAKTQ 410

GO:0005737 "cytoplasm" evidence=ISM

GO:0008483 "transaminase activity" evidence=ISS

GO:0009058 "biosynthetic process" evidence=ISS

GO:0004838 "L-tyrosine:2-oxoglutarate aminotransferase activity" evidence=IGI;IMP;IDA;TAS

GO:0010189 "vitamin E biosynthetic process" evidence=IEP;IMP

TAIR|locus:2158926 AT5G36160 [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 121/231 (52%), Positives = 152/231 (65%)

Query:     3 IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
             I ET  KLGI+VIADEVY H  FG+  FV M  F  +VPV+ LG+ISKRW VPGWRLGW+
Sbjct:   205 IAETACKLGILVIADEVYDHFAFGDKPFVSMAEFAELVPVIVLGAISKRWFVPGWRLGWM 264

Query:    63 VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
             VT DP+GI++D G        +NM  D    +        GA+P I+  T+EEFFS   +
Sbjct:   265 VTLDPHGIMKDSGFVQTLINVVNMSTDPATFIQ-------GAMPDIIGNTKEEFFSSKLE 317

Query:   123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
             ++++ A+IC + L +IPCITCP KPEGSMF M         +KLN+SLLE I+ D +F  
Sbjct:   318 MVKKCAEICYEELMKIPCITCPCKPEGSMFTM---------VKLNFSLLEDISDDLDFCS 368

Query:   183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ 233
             KLAKEES+I+LPG  VGLK+WLRITFAVE      G  R+K F  RH+K Q
Sbjct:   369 KLAKEESMIILPGQAVGLKNWLRITFAVELELLIEGFSRLKNFTERHSKNQ 419

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA;IDA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0004838 "L-tyrosine:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0006559 "L-phenylalanine catabolic process" evidence=IGI

GO:0006572 "tyrosine catabolic process" evidence=IGI

UNIPROTKB|Q9ST03 naat-B "Nicotianamine aminotransferase B" [Hordeum vulgare (taxid:4513)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 118/231 (51%), Positives = 158/231 (68%)

Query:     3 IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
             + E  K+LGI+VIADEVYG LV G+  F+PMGVFG I PVL++GS+SK WIVPGWRLGW+
Sbjct:   332 VAEVAKRLGILVIADEVYGKLVLGSAPFIPMGVFGHITPVLSIGSLSKSWIVPGWRLGWV 391

Query:    63 VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKIT 121
                DP  ILQ+  +    S S+     +YL +S    T +  A+PQILE T+E+FF  I 
Sbjct:   392 AVYDPRKILQETKI----STSIT----NYLNVSTDPATFIQAALPQILENTKEDFFKAII 443

Query:   122 DILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFA 181
              +L+E+++IC  ++KE   ITCP KPEGSMFVM         +KLN  LLE I+ D +F 
Sbjct:   444 GLLKESSEICYKQIKENKYITCPHKPEGSMFVM---------VKLNLHLLEEIDDDIDFC 494

Query:   182 LKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKK 232
              KLAKEES+I+ PG  +G+ +W+RITFA  PS+ + GLGR+K+F  R+ K+
Sbjct:   495 CKLAKEESVILCPGSVLGMANWVRITFACVPSSLQDGLGRIKSFCQRNKKR 545

GO:0033855 "nicotianamine aminotransferase activity" evidence=IDA

UNIPROTKB|Q9ST02 naat-A "Nicotianamine aminotransferase A" [Hordeum vulgare (taxid:4513)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 113/230 (49%), Positives = 154/230 (66%)

Query:     3 IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
             + E  +KLGI+VIADEVYG LV G+  F+PMGVFG I PVL++GS+SK WIVPGWRLGW+
Sbjct:   242 VAEVARKLGILVIADEVYGKLVLGSAPFIPMGVFGHIAPVLSIGSLSKSWIVPGWRLGWV 301

Query:    63 VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
                DP  IL+   ++   +  LN+  D    + E       A+P+ILE T+ +FF +I  
Sbjct:   302 AVYDPTKILEKTKISTSITNYLNVSTDPATFVQE-------ALPKILENTKADFFKRIIG 354

Query:   123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
             +L+E+++IC   +KE   ITCP KPEGSMFVM         +KLN  LLE I+ D +F  
Sbjct:   355 LLKESSEICYREIKENKYITCPHKPEGSMFVM---------VKLNLHLLEEIHDDIDFCC 405

Query:   183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKK 232
             KLAKEES+I+ PG  +G+++W+RITFA  PS+ + GL R+K+F  R+ KK
Sbjct:   406 KLAKEESVILCPGSVLGMENWVRITFACVPSSLQDGLERVKSFCQRNKKK 455

GO:0033855 "nicotianamine aminotransferase activity" evidence=IDA

TAIR|locus:2121407 AT4G28420 [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 109/230 (47%), Positives = 145/230 (63%)

Query:     3 IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
             + ET KKLGIMVI DEVY   +FG+  FVPMG F SI PV+TLG ISK WIVPGWR+GW+
Sbjct:   223 VAETAKKLGIMVITDEVYCQTIFGDKPFVPMGEFSSITPVITLGGISKGWIVPGWRIGWI 282

Query:    63 VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
               +DP GIL+  G+    SI  N+   D  +  ++      A+P+IL K  +E F+K   
Sbjct:   283 ALNDPRGILKSTGMV--QSIQQNL---D--ITPDATTIVQAALPEILGKANKELFAKKNS 335

Query:   123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
             +L++  ++ CDRLKEIPC+ C KKPE   ++         L KL   LLE I  D +F +
Sbjct:   336 MLKQNVELVCDRLKEIPCLVCNKKPESCTYL---------LTKLKLPLLEDIEDDMDFCM 386

Query:   183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKK 232
             KLAKEE++++LPG+ +GLK+W+RIT  VE    E  L R+  F  RH KK
Sbjct:   387 KLAKEENLVLLPGVALGLKNWIRITIGVEAQMLEDALERLNGFCKRHLKK 436

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

TAIR|locus:2046056 SUR1 "SUPERROOT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 107/230 (46%), Positives = 144/230 (62%)

Query:     3 IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
             + ET +KLGIMVI+DEVY   +FG+  FV MG F SIVPVLTL  ISK W+VPGW++GW+
Sbjct:   229 VAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWI 288

Query:    63 VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
               +DP G+ +   V    SI  N+   D  +  +       A+P ILEK ++ FF+K   
Sbjct:   289 ALNDPEGVFETTKV--LQSIKQNL---D--VTPDPATIIQAALPAILEKADKNFFAKKNK 341

Query:   123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
             IL+   D+ CDRLK+IPC+ CPKKPE   ++         L KL  SL++ I  D +F +
Sbjct:   342 ILKHNVDLVCDRLKDIPCVVCPKKPESCTYL---------LTKLELSLMDNIKDDIDFCV 392

Query:   183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKK 232
             KLA+EE+++ LPG  +GLK+W+RIT  VE    E  L R+K F  RHAKK
Sbjct:   393 KLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDALERLKGFCTRHAKK 442

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA;RCA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0016846 "carbon-sulfur lyase activity" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP

GO:0080108 "S-alkylthiohydroximate lyase activity" evidence=IMP

GO:0001560 "regulation of cell growth by extracellular stimulus" evidence=IMP

GO:0048830 "adventitious root development" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=IMP;RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

TAIR|locus:2121382 AT4G28410 [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 106/232 (45%), Positives = 146/232 (62%)

Query:     3 IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
             + E  +KLGIMVI+DEVY   ++G   FVPMG+F SI PV+TLGSISK W+VPGWR+GW+
Sbjct:   231 VAEVARKLGIMVISDEVYNQTIYGENKFVPMGIFSSITPVVTLGSISKGWLVPGWRIGWI 290

Query:    63 VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVG-AVPQILEKTEEEFFSKIT 121
               +DP  + +   V    SI       ++L +S    T +  A+P ILEKT++EFF K  
Sbjct:   291 AMNDPKNVFKTTRVV--ESIK------EHLDISPDPSTILQFALPNILEKTKKEFFEKNN 342

Query:   122 DILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFA 181
              IL +  D   D LK+IPC+TCPKKPE   +++          KL+ SLLE I +D +F 
Sbjct:   343 SILSQNVDFAFDALKDIPCLTCPKKPESCTYLV---------TKLDLSLLEDITNDFDFC 393

Query:   182 LKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ 233
             +KLA+EE+++ LPG  +GLK+W+R +  VE S  E    R+K F+ RH K Q
Sbjct:   394 MKLAQEENLVFLPGEVLGLKNWVRFSIGVERSMLEDAFMRLKGFFARHTKTQ 445

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

TAIR|locus:2047441 TAT3 "tyrosine aminotransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 100/229 (43%), Positives = 144/229 (62%)

Query:     3 IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
             + E  +KLGIM+I+DEVY H+V+G+  F+PMG F SI PV+TLGSISK W+ PGWR+GW+
Sbjct:   213 VAEMARKLGIMIISDEVYDHVVYGDKPFIPMGKFASIAPVITLGSISKGWVNPGWRVGWI 272

Query:    63 VTSDPNGILQDLGVAFFHSISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKIT 121
               +DPNGI    GV           ++D+L L  +  +    A+P ILEKT +EFF K  
Sbjct:   273 AMNDPNGIFVSTGVV--------QAIEDFLDLTPQPSFILQEALPDILEKTPKEFFEKKI 324

Query:   122 DILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFA 181
               +R   ++ C+RLK+IPC+ CPKKPE   ++          LKL+ S+L  I +D +F 
Sbjct:   325 KAMRRNVELSCERLKDIPCLFCPKKPESCSYLW---------LKLDTSMLNNIKNDFDFC 375

Query:   182 LKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHA 230
              KL  EES+I++PG+ +G ++W+RI+   + S  +    R+K FY RHA
Sbjct:   376 TKLVSEESLILIPGVALGAENWVRISIGTDESVVQEIFDRLKGFYDRHA 424

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0004838 "L-tyrosine:2-oxoglutarate aminotransferase activity" evidence=ISS

TAIR|locus:2128459 CORI3 "CORONATINE INDUCED 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 95/232 (40%), Positives = 133/232 (57%)

Query:     3 IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
             + E  K+L IMV++DEV+   +FG+  FVPMG F SIVPV+TLGSISK W VPGWR GWL
Sbjct:   198 LAELAKELKIMVVSDEVFRWTLFGSNPFVPMGKFSSIVPVVTLGSISKGWKVPGWRTGWL 257

Query:    63 VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKIT 121
                D +G+        F +  +     D+L ++ +  T +  A+P ILEKT +EFF K  
Sbjct:   258 TLHDLDGV--------FRNTKVLQAAQDFLQINNNPPTVIQAAIPDILEKTPQEFFDKRQ 309

Query:   122 DILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFA 181
               L++  +    +LK IP +TC  KPE   F+           +L+ S    I  D +F 
Sbjct:   310 SFLKDKVEFGYSKLKYIPSLTCYMKPEACTFLW---------TELDLSSFVDIEDDQDFC 360

Query:   182 LKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ 233
              KLAKEE+++VLPGI    K+WLR +  +E    E  L R+K+F  RH+ K+
Sbjct:   361 NKLAKEENLVVLPGIAFSQKNWLRHSIDMETPVLEDALERLKSFCDRHSNKK 412

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA;IEP

GO:0008483 "transaminase activity" evidence=IEA;ISS;NAS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010188 "response to microbial phytotoxin" evidence=IEP

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0004121 "cystathionine beta-lyase activity" evidence=IDA

GO:0004838 "L-tyrosine:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0042538 "hyperosmotic salinity response" evidence=TAS

GO:0050362 "L-tryptophan:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0048046 "apoplast" evidence=IDA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2128434 AT4G23590 [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 96/224 (42%), Positives = 128/224 (57%)

Query:     8 KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 67
             ++LGIMV++DEVY   VFG+  FVPMG F SIVPV+TLGSISK WIVPGWR GWL   D 
Sbjct:   203 RELGIMVVSDEVYRWSVFGSNPFVPMGKFSSIVPVITLGSISKGWIVPGWRTGWLALHDL 262

Query:    68 NGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILRE 126
             NG+        F S  +     ++L ++    T +  A+P ILEKT ++FF K    L++
Sbjct:   263 NGV--------FRSTKVLKAAKEFLEITSKPPTVIQAAIPTILEKTPQDFFEKRGIFLKD 314

Query:   127 AADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAK 186
               D    +LK IP +TC  KPE   F+           KL+      I  D +F  KLAK
Sbjct:   315 KVDFGYSKLKNIPTLTCYMKPESCTFLW---------TKLDPLHFVDIEDDHDFCRKLAK 365

Query:   187 EESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHA 230
             EE+++VLPGI  G  +WLR +  +E    E    R+K+F  RH+
Sbjct:   366 EENLVVLPGIAFGQNNWLRHSIDMETPRLEDAFERLKSFCERHS 409

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	233
PLN00145	430	PLN00145, PLN00145, tyrosine/nicotianamine aminotr	1e-111
PLN00143	409	PLN00143, PLN00143, tyrosine/nicotianamine aminotr	1e-102
PLN02656	409	PLN02656, PLN02656, tyrosine transaminase	1e-102
TIGR01265	403	TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine	2e-86
PLN02187	462	PLN02187, PLN02187, rooty/superroot1	3e-66
TIGR01264	401	TIGR01264, tyr_amTase_E, tyrosine aminotransferase	1e-43
PTZ00433	412	PTZ00433, PTZ00433, tyrosine aminotransferase; Pro	8e-38
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	3e-28
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	1e-27
PRK05764	393	PRK05764, PRK05764, aspartate aminotransferase; Pr	4e-21
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	3e-16
PRK06108	382	PRK06108, PRK06108, aspartate aminotransferase; Pr	3e-15
PRK13355	517	PRK13355, PRK13355, bifunctional HTH-domain contai	1e-11
PRK08363	398	PRK08363, PRK08363, alanine aminotransferase; Vali	3e-11
PRK06107	402	PRK06107, PRK06107, aspartate aminotransferase; Pr	5e-11
PRK08361	391	PRK08361, PRK08361, aspartate aminotransferase; Pr	4e-10
PRK09265	404	PRK09265, PRK09265, aminotransferase AlaT; Validat	5e-10
PRK06348	384	PRK06348, PRK06348, aspartate aminotransferase; Pr	1e-09
PRK05957	389	PRK05957, PRK05957, aspartate aminotransferase; Pr	5e-09
PRK07568	397	PRK07568, PRK07568, aspartate aminotransferase; Pr	2e-08
PRK07324	373	PRK07324, PRK07324, transaminase; Validated	6e-07
COG1167	459	COG1167, ARO8, Transcriptional regulators containi	3e-06
PRK07777	387	PRK07777, PRK07777, aminotransferase; Validated	1e-05
PLN00175	413	PLN00175, PLN00175, aminotransferase family protei	2e-05
TIGR03947	359	TIGR03947, viomycin_VioD, capreomycidine synthase	2e-05
PRK06855	433	PRK06855, PRK06855, aminotransferase; Validated	6e-05
TIGR03540	383	TIGR03540, DapC_direct, LL-diaminopimelate aminotr	2e-04
PRK08175	395	PRK08175, PRK08175, aminotransferase; Validated	7e-04
COG1168	388	COG1168, MalY, Bifunctional PLP-dependent enzyme w	0.001
PRK06836	394	PRK06836, PRK06836, aspartate aminotransferase; Pr	0.001
PRK08912	387	PRK08912, PRK08912, hypothetical protein; Provisio	0.003
PRK07682	378	PRK07682, PRK07682, hypothetical protein; Validate	0.003
PRK08056	356	PRK08056, PRK08056, threonine-phosphate decarboxyl	0.004

>gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional

 Score =  326 bits (838), Expect = e-111
 Identities = 134/231 (58%), Positives = 166/231 (71%), Gaps = 18/231 (7%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           I ET +KLGI+VIADEVY HL FG+  FVPMGVFG + PVLTLGSISKRW+VPGWRLGW+
Sbjct: 215 IAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWI 274

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKIT 121
            T DPNGIL++  V    SI       +YL +S    T V GA+PQI+  T+EEFF+K  
Sbjct: 275 ATCDPNGILKETKVV--DSIR------NYLNISTDPATFVQGAIPQIIANTKEEFFTKTL 326

Query: 122 DILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFA 181
            +L+E ADIC +++KEI CITCP KPEGSMFVM         +KL+ S L GI  D +F 
Sbjct: 327 GLLKETADICYEKIKEIKCITCPHKPEGSMFVM---------VKLDLSCLSGIKDDMDFC 377

Query: 182 LKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKK 232
            KLAKEES++VLPG  +G+K+WLRITFA++P + E GL R+K+F  RHAK 
Sbjct: 378 CKLAKEESVVVLPGSALGMKNWLRITFAIDPPSLEDGLERLKSFCLRHAKL 428

Length = 430

>gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional

 Score =  303 bits (776), Expect = e-102
 Identities = 136/230 (59%), Positives = 165/230 (71%), Gaps = 16/230 (6%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           I ET +KLGI+VIADEVYGH+VFG+  FVPMG+F SIVPV+TLGSISKRW++PGW LGWL
Sbjct: 195 IAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWL 254

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
           VT DP+G+LQ   +A     +LN           +      A+P+ILEKT E+FFSK  +
Sbjct: 255 VTCDPSGLLQICEIADSIKKALN-----PAPFPPTFIQ--AAIPEILEKTTEDFFSKTIN 307

Query: 123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
           ILR A   C D+LKEIPCI CP+K EG+ F +         +KLN  LLE I  D EF L
Sbjct: 308 ILRAALAFCYDKLKEIPCIMCPQKAEGAFFAL---------VKLNLLLLEDIEDDMEFCL 358

Query: 183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKK 232
           KLAKEES+I+LPG+TVGLK+WLRITFAVE S+ E GLGR+K+F  RHAKK
Sbjct: 359 KLAKEESLIILPGVTVGLKNWLRITFAVEQSSLEDGLGRLKSFCGRHAKK 408

Length = 409

>gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase

 Score =  302 bits (774), Expect = e-102
 Identities = 138/232 (59%), Positives = 168/232 (72%), Gaps = 18/232 (7%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           I ET +KL I+VIADEVYGHL FG+  FVPMGVFGSIVPVLTLGS+SKRWIVPGWRLGW 
Sbjct: 194 IAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWF 253

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKIT 121
           VT+DP+G  +D  +          R+  Y  +L         AVP ILE+T+E FF K  
Sbjct: 254 VTTDPSGSFRDPKIV--------ERIKKYFDILGGPATFIQAAVPTILEQTDESFFKKTI 305

Query: 122 DILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFA 181
           +IL++++DICCDR+KEIPCITCP KPEGSM VM         +KLN SLLE I+ D +F 
Sbjct: 306 NILKQSSDICCDRIKEIPCITCPHKPEGSMAVM---------VKLNLSLLEDISDDIDFC 356

Query: 182 LKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ 233
            KLA+EES+I+LPG  VGLK+WLRITFA +PS+ E  LGR+K+FY RH+K Q
Sbjct: 357 FKLAREESVIILPGTAVGLKNWLRITFAADPSSLEEALGRIKSFYLRHSKTQ 408

Length = 409

>gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase

 Score =  261 bits (669), Expect = 2e-86
 Identities = 105/229 (45%), Positives = 138/229 (60%), Gaps = 20/229 (8%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           I E  +KLGI +IADE+YGH+VFG+  F+PM  F SIVPVL+LG ISKRW+VPGWRLGW+
Sbjct: 194 IAEVAEKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLGWI 253

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKIT 121
           +  DP+GI +D        +       + L       T V GA+P ILE T +EFF    
Sbjct: 254 IIHDPHGIFRD---TVLQGLK------NLLQRILGPATIVQGALPDILENTPQEFFDGKI 304

Query: 122 DILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFA 181
            +L+  A++C + LK+IP + CP KPEG+M++M         +KL   L   I  D +F 
Sbjct: 305 SVLKSNAELCYEELKDIPGLVCP-KPEGAMYLM---------VKLELELFPEIKDDVDFC 354

Query: 182 LKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHA 230
            KLA+EES+I LPG   GL +W+RIT  V  S  E    R+K F  RHA
Sbjct: 355 EKLAREESVICLPGSAFGLPNWVRITITVPESMLEEACSRIKEFCERHA 403

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403

>gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1

 Score =  211 bits (537), Expect = 3e-66
 Identities = 106/230 (46%), Positives = 143/230 (62%), Gaps = 16/230 (6%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           + ET +KLGIMVI+DEVY   +FG+  FV MG F SIVPVLTL  ISK W+VPGW++GW+
Sbjct: 229 VAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWI 288

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
             +DP G+ +   V    SI  N+ +       +       A+P ILEK ++ FF+K   
Sbjct: 289 ALNDPEGVFETTKV--LQSIKQNLDVT-----PDPATIIQAALPAILEKADKNFFAKKNK 341

Query: 123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
           IL+   D+ CDRLK+IPC+ CPKKPE   ++         L KL  SL++ I  D +F +
Sbjct: 342 ILKHNVDLVCDRLKDIPCVVCPKKPESCTYL---------LTKLELSLMDNIKDDIDFCV 392

Query: 183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKK 232
           KLA+EE+++ LPG  +GLK+W+RIT  VE    E  L R+K F  RHAKK
Sbjct: 393 KLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDALERLKGFCTRHAKK 442

Length = 462

>gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic

 Score =  150 bits (381), Expect = 1e-43
 Identities = 67/217 (30%), Positives = 106/217 (48%), Gaps = 19/217 (8%)

Query: 14  VIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 73
           +IADE+YG +VF    F P+    S VP+L+ G ++KRW+VPGWRLGW++  D  GIL+D
Sbjct: 204 IIADEIYGDMVFSGATFEPVASLSSNVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRD 263

Query: 74  LGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCD 133
           +       + L+ R+     + +      GA+P IL +T +E+F     +L   A +C  
Sbjct: 264 IRDGL---VKLSQRILGPCTIVQ------GALPSILLRTPQEYFDGTLSVLESNAMLCYG 314

Query: 134 RLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVL 193
            L  +P +  P  P G+M++M         + +         +D EF  +L  E+S+  L
Sbjct: 315 ALAAVPGLQ-PVMPSGAMYMM---------VGIEMEHFPEFKNDVEFTERLIAEQSVFCL 364

Query: 194 PGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHA 230
           PG       + R+   V     E    R++ F  RH 
Sbjct: 365 PGSCFEYPGFFRVVLTVPVVMMEEACSRIQEFCERHY 401

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401

>gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional

 Score =  135 bits (342), Expect = 8e-38
 Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 21/225 (9%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 67
           ++L + +I+DE+Y  +VF    F  +  F + VP + LG  +K  +VPGWRLGWL+  DP
Sbjct: 207 EELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDP 266

Query: 68  NGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILRE 126
           +G          +       M    +L     + V  A+ + L  T +E   +I   L E
Sbjct: 267 HG----------NGGDFLDGMKRLGMLVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEE 316

Query: 127 AADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAK 186
            A +  + + E   ++    P GSMF+M          +L+      I SD EF  KL +
Sbjct: 317 GAMVLYNHIGECIGLSP-TMPRGSMFLM---------SRLDLEKFRDIKSDVEFYEKLLE 366

Query: 187 EESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAK 231
           EE++ VLPG    +  + R+T +         + R+KAF  RH K
Sbjct: 367 EENVQVLPGEIFHMPGFTRLTISRPVEVLREAVERIKAFCERHKK 411

Length = 412

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score =  108 bits (273), Expect = 3e-28
 Identities = 52/219 (23%), Positives = 85/219 (38%), Gaps = 32/219 (14%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 67
           KK GI++I+DE Y  LV+       + +  +   V+ L S SK + +PG R+G+L+    
Sbjct: 162 KKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPE 221

Query: 68  NGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREA 127
                         +    ++  Y     S   +  A    L    EE   ++ +  R  
Sbjct: 222 ------------ELLERLKKLLPYTTSGPST-LSQAAAAAAL-DDGEEHLEELRERYRRR 267

Query: 128 ADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKE 187
            D   + LKE+  +    KP G  F+          L L          D EF  +L  E
Sbjct: 268 RDALLEALKELGPLVVV-KPSGGFFL---------WLDLP------EGDDEEFLERLLLE 311

Query: 188 ESIIVLPGITVG--LKDWLRITFAVEPSAFEIGLGRMKA 224
             ++V PG   G   + ++R++FA      E  L R+  
Sbjct: 312 AGVVVRPGSAFGEGGEGFVRLSFATPEEELEEALERLAE 350

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score =  108 bits (271), Expect = 1e-27
 Identities = 49/222 (22%), Positives = 91/222 (40%), Gaps = 30/222 (13%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMG-VFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 66
           ++  I++I+DE+Y  LV+       +  + G+    +T+ S SK + + GWR+GW+V   
Sbjct: 193 REHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPP 252

Query: 67  PNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILRE 126
                          I+   ++  YL           A+  +     +E   ++ +  RE
Sbjct: 253 E------------ELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRE 300

Query: 127 AADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAK 186
             D+  + L EI  ++  K PEG+ ++                    +    EFA KL +
Sbjct: 301 RRDLLVEALNEIGGLSVVKPPEGAFYLF-----------PKIP---ELLDSEEFAKKLLE 346

Query: 187 EESIIVLPGITVGL---KDWLRITFAVEPSAFEIGLGRMKAF 225
           E  + V+PG   G    + ++R++ A      E  L R+  F
Sbjct: 347 EAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLARF 388

Length = 393

>gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional

 Score = 90.2 bits (225), Expect = 4e-21
 Identities = 66/238 (27%), Positives = 98/238 (41%), Gaps = 69/238 (28%)

Query: 11  GIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLGWLV-- 63
            I V++DE+Y  LV+    F  +    S+ P      +T+   SK + + GWRLG+    
Sbjct: 197 DIWVLSDEIYEKLVYDGAEFTSI---ASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGP 253

Query: 64  --------------TSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQIL 109
                         TS+P  I Q   VA     +LN   D+                  +
Sbjct: 254 KELIKAMSKLQSHSTSNPTSIAQYAAVA-----ALNGPQDE------------------V 290

Query: 110 EKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYS 169
           E+  + F         E  D+  D L EIP + CP KPEG+ F ++           N S
Sbjct: 291 EEMRQAF--------EERRDLMVDGLNEIPGLECP-KPEGA-FYVF----------PNVS 330

Query: 170 LLEG--INSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAF 225
            L G  I    EFA  L +E  + V+PGI  G   ++R+++A      E GL R++ F
Sbjct: 331 KLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYATSLEDLEEGLERIERF 388

Length = 393

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score = 76.2 bits (188), Expect = 3e-16
 Identities = 41/212 (19%), Positives = 73/212 (34%), Gaps = 40/212 (18%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGW 61
           + +  K+  I+++ DE Y   VFG+   V      +    +L +GS SK + + GWR+G+
Sbjct: 167 LLDLAKEHNILLLVDEAYAGFVFGSLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGY 226

Query: 62  LVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEE--EFFSK 119
           ++ +                IS   ++      S        A    L           +
Sbjct: 227 ILGNAA-------------VISQLRKLARPFYSSTH---LQAAAAAALSDPLLVASELEE 270

Query: 120 ITDILREAADICCDRLKEI--PCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSD 177
           +   ++E  D   D L+      +      +   F++     +                 
Sbjct: 271 MRQRIKERRDYLRDGLEAAGLSVL----PSQAGFFLLTGLDPEAA--------------- 311

Query: 178 TEFALKLAKEESIIVLPGITVGLKDWLRITFA 209
              A  L +E  + V PG + G   WLRIT A
Sbjct: 312 LALAQVLLEEVGVYVTPGSSFGGPGWLRITVA 343

Length = 357

>gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional

 Score = 73.4 bits (181), Expect = 3e-15
 Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 38/221 (17%)

Query: 11  GIMVIADEVYGHLVFGNTHFVPMGVFGSIVP----VLTLGSISKRWIVPGWRLGWLVTSD 66
           G+ ++ADEVY  L +      P   F  I      ++ + S SK W + GWRLGWLV   
Sbjct: 191 GLWIVADEVYERLYYAPGGRAPS--FLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVA-- 246

Query: 67  PNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILRE 126
           P  + Q L     ++ S             + +    AV  + E   E+F +++   LR 
Sbjct: 247 PPALGQVLEKLIEYNTS-----------CVAQFVQRAAVAALDE--GEDFVAELVARLRR 293

Query: 127 AADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAK 186
           + D   D L+ +P +    KP+G+M+            +     + G+      A +L  
Sbjct: 294 SRDHLVDALRALPGVEVA-KPDGAMYA---------FFR-----IPGVTDSLALAKRLVD 338

Query: 187 EESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAF 225
           E  + + PG   G   + +LR  FA +P+  +  + R++ F
Sbjct: 339 EAGLGLAPGTAFGPGGEGFLRWCFARDPARLDEAVERLRRF 379

Length = 382

>gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 45/232 (19%), Positives = 95/232 (40%), Gaps = 27/232 (11%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           I +  ++  +++ +DE+Y  LV        +      +  +T   +SK  ++ G+R+GW+
Sbjct: 306 IVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWM 365

Query: 63  VTSDPNGILQDLGVAFFHSISL--NMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKI 120
           + S    I +D    +   +++  NMR+   +     V T +G    + +          
Sbjct: 366 ILSGNKRIAKD----YIEGLNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVP------ 415

Query: 121 TDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEF 180
              + E  ++  + L  IP I+   KP+ + +            K++      I+ D +F
Sbjct: 416 GGRVYEQRELVYNALNAIPGISA-VKPKAAFY---------IFPKIDVKKFN-IHDDEQF 464

Query: 181 ALKLAKEESIIVLPGITVGLK--DWLRITFAVEPSAFEIGLGRMKAF--YYR 228
           AL L  ++ ++++ G        D  R+ +       E  + R+  F  YYR
Sbjct: 465 ALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRLEDLEDAMDRLADFFSYYR 516

Length = 517

>gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 55/219 (25%), Positives = 87/219 (39%), Gaps = 30/219 (13%)

Query: 11  GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI 70
            + VI+DE+Y  + +   H  P G     VPV+ +  +SK +   GWRLG++   DP G 
Sbjct: 199 DLPVISDEIYDLMTYEGKHVSP-GSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGK 257

Query: 71  LQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTE--EEFFSKITDILREAA 128
           L ++  A    I    R+     L  +      A+  +    +  EE+  K    L+E  
Sbjct: 258 LAEVREA----IDKLARIR----LCPNTPAQFAAIAGLTGPMDYLEEYMKK----LKERR 305

Query: 129 DICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEE 188
           D    RL EIP I+   KP+G+ ++     E                 D EF L +  E 
Sbjct: 306 DYIYKRLNEIPGISTT-KPQGAFYIFPRIEEGP------------WKDDKEFVLDVLHEA 352

Query: 189 SIIVLPGITVG-LKDW-LRITFAVEPSAFEIGLGRMKAF 225
            ++ + G   G       R+ F       E  + R + F
Sbjct: 353 HVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMDRFEEF 391

Length = 398

>gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional

 Score = 61.3 bits (149), Expect = 5e-11
 Identities = 47/236 (19%), Positives = 85/236 (36%), Gaps = 63/236 (26%)

Query: 12  IMVIADEVYGHLVFGNTHFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLGWLV--- 63
           ++V+ D++Y H+ F +    P     +  P     VL    +SK + + GWR+G+     
Sbjct: 201 VLVLTDDIYDHIRFDDE---PTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPA 257

Query: 64  -------------TSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILE 110
                        +S P+ I Q    A  +         D   ++ESV            
Sbjct: 258 DLIAAINKLQSQSSSCPSSISQAAAAAALNG--------DQSFVTESV------------ 297

Query: 111 KTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSL 170
                       + ++  D     L  IP ++C   P+G+ F +Y      C   +  + 
Sbjct: 298 -----------AVYKQRRDYALALLNAIPGLSC-LVPDGA-FYLYVN----CAGLIGKTT 340

Query: 171 LEG--INSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKA 224
            EG  + +D +  L L     + V+ G   GL  + R++ A      E    R++ 
Sbjct: 341 PEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIATSLETLEEACARIER 396

Length = 402

>gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional

 Score = 58.4 bits (141), Expect = 4e-10
 Identities = 46/223 (20%), Positives = 100/223 (44%), Gaps = 30/223 (13%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           I +  +   I +++DE Y H ++      PM  +     +L   S SK + + GWRLG++
Sbjct: 191 IADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILA-NSFSKTFAMTGWRLGFV 249

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
           +   P  +++D+           +++  Y++ + + +  +  +  +  K   +   ++  
Sbjct: 250 IA--PEQVIKDM-----------IKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRK 296

Query: 123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
              E   +   RLKE+P I    +P+G+ +V     E             G++S+ +FA 
Sbjct: 297 EYNERRKLVLKRLKEMPHIK-VFEPKGAFYVFANIDE------------TGMSSE-DFAE 342

Query: 183 KLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMK 223
            L ++  ++V+PG   G   + ++RI++A         + RM+
Sbjct: 343 WLLEKARVVVIPGTAFGKAGEGYIRISYATSKEKLIEAMERME 385

Length = 391

>gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated

 Score = 58.3 bits (142), Expect = 5e-10
 Identities = 51/238 (21%), Positives = 99/238 (41%), Gaps = 39/238 (16%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           I E  ++  +++ ADE+Y  +++     + +      +  +T   +SK + V G+R+GW+
Sbjct: 193 IVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWM 252

Query: 63  VTSDPNGILQDLGVAFFHSISL--NMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKI 120
           V S P    +     +   + +  +MR+   +    ++ T +G   Q            I
Sbjct: 253 VLSGPKKHAKG----YIEGLDMLASMRLCANVPAQHAIQTALGG-YQ-----------SI 296

Query: 121 TDI------LREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGI 174
            ++      L E  D   + L  IP ++C  KP+G+++            KL+  +   I
Sbjct: 297 NELILPGGRLYEQRDRAWELLNAIPGVSC-VKPKGALY---------AFPKLDPKVYP-I 345

Query: 175 NSDTEFALKLAKEESIIVLPGITVGLK--DWLRITFAVEPSAFEIGLGRMKAF--YYR 228
           + D +F L L  +E ++++ G        D  RI         E  +GR+  F   YR
Sbjct: 346 HDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLPRVDDLEEAIGRIGRFLSGYR 403

Length = 404

>gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 37/201 (18%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGW 61
           I +   +  + +I+DEVY    F    FVPM     +    +T GS SK + + GWR+G+
Sbjct: 187 IAKIAIEYDLFIISDEVYDGFSFYED-FVPMATLAGMPERTITFGSFSKDFAMTGWRIGY 245

Query: 62  LVTSD-PNGILQDL--GVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFS 118
           ++  D      + +  G+ F  + +++ R   Y L                 K  +    
Sbjct: 246 VIAPDYIIETAKIINEGICF-SAPTISQRAAIYAL-----------------KHRDTIVP 287

Query: 119 KITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDT 178
            I +  ++  +    R++ IP ++    P+GS    +   +   L            S  
Sbjct: 288 LIKEEFQKRLEYAYKRIESIPNLSL-HPPKGS-IYAFINIKKTGL------------SSV 333

Query: 179 EFALKLAKEESIIVLPGITVG 199
           EF  KL KE  ++V+PG   G
Sbjct: 334 EFCEKLLKEAHVLVIPGKAFG 354

Length = 384

>gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional

 Score = 55.1 bits (133), Expect = 5e-09
 Identities = 53/221 (23%), Positives = 99/221 (44%), Gaps = 39/221 (17%)

Query: 11  GIMVIADEVYGHLVFGNT-HFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNG 69
           GI  I+DE Y +  +    HF P  + GS    ++L S+SK +    WR+G++V   P  
Sbjct: 193 GIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVI--PIH 250

Query: 70  ILQDLGVAFFHSISLNMRMDDYLLLSESV---YTTVGAVPQILEKTEEEFFSKITDILRE 126
           +L+ +            ++ D +L+   V   Y  +GA+ Q+ +   ++   +I  +   
Sbjct: 251 LLEAIK-----------KIQDTILICPPVVSQYAALGAL-QVGKSYCQQHLPEIAQV--- 295

Query: 127 AADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAK 186
              I    L ++          G+ +         C LK+N  L     +D E   +L +
Sbjct: 296 -RQILLKSLGQLQDRCTLHPANGAFY---------CFLKVNTDL-----NDFELVKQLIR 340

Query: 187 EESIIVLPGITVGLKD--WLRITF-AVEPSAFEIGLGRMKA 224
           E  + V+PG T G+K+  +LRI + A++ +  + G+ R+  
Sbjct: 341 EYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQ 381

Length = 389

>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 17/153 (11%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGW 61
           + E  KK  + +I+DEVY   V+    +        +   V+ + S+SKR+   G R+G 
Sbjct: 187 LAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGC 246

Query: 62  LVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKIT 121
           L++ +   I   + +          R      LS      +GA    L  T E +F ++ 
Sbjct: 247 LISKNKELIAAAMKLC-------QAR------LSPPTLEQIGAAA--LLDTPESYFDEVR 291

Query: 122 DILREAADICCDRLKEIPCITCPKKPEGSMFVM 154
           +  ++  DI  + L +IP + C  KP+G+ +++
Sbjct: 292 EEYKKRRDILYEELNKIPGVVCE-KPKGAFYII 323

Length = 397

>gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 47/233 (20%), Positives = 90/233 (38%), Gaps = 53/233 (22%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPV----LTLGSISKRWIVPGWR 58
           I E  + +   V++DEVY             G   SI  +    ++  S+SK + +PG R
Sbjct: 178 IVEIARSVDAYVLSDEVY-------RPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGIR 230

Query: 59  LGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAV------PQILEKT 112
           +GW+  +      +++            +  DY ++   V+  + A         ILE+ 
Sbjct: 231 VGWIAAN------EEVIDILR-------KYRDYTMICAGVFDDMLASLALEHRDAILERN 277

Query: 113 EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLE 172
                     I+R    I  + + + P ++  K    S             +KL+  +  
Sbjct: 278 R--------KIVRTNLAILDEWVAKEPRVSYVKPKAVST----------SFVKLDVDM-- 317

Query: 173 GINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAF 225
                 +F LKL KE  ++++PG    L+  +RI +  +    + GL ++  F
Sbjct: 318 ---PSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCCDTETLKKGLKKLSEF 367

Length = 373

>gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 53/232 (22%), Positives = 85/232 (36%), Gaps = 58/232 (25%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP---------VLTLGSISKRWIVPGWR 58
           +K  +++I D+ YG L +               P         V+ LGS SK  + PG R
Sbjct: 257 EKYDVLIIEDDYYGELRYDG---------PPPPPLKALDAPGRVIYLGSFSKT-LAPGLR 306

Query: 59  LGWLVTSDPN--GILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEF 116
           LG++V        +L+    A     SL+       LLS       G   + L       
Sbjct: 307 LGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLS-------GHYDRHLR------ 353

Query: 117 FSKITDILREAADICCDRLKEI-PCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGIN 175
             ++        D   + L E  P +    +PEG +F+          L+L     EGI+
Sbjct: 354 --RLRREYARRRDALLEALAEYLPELATWTRPEGGLFLW---------LELP----EGID 398

Query: 176 SDTEFALKLAKEESIIVLPGITVGLKD-----WLRITFA-VEPSAFEIGLGR 221
           +    A   A E+ ++V P  +    D      LR++F+       E G+ R
Sbjct: 399 ARELLA--AALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKR 448

Length = 459

>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 12  IMVIADEVYGHLVFGNTHFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGW 61
           ++VI DEVY HLVF     +P+    G     +T+ S +K + V GW++GW
Sbjct: 193 LLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGW 243

Length = 387

>gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 49/227 (21%), Positives = 85/227 (37%), Gaps = 39/227 (17%)

Query: 2   CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGW 61
           C E       ++   DEVY  L F   H     + G     +T+ S+ K + + GW++GW
Sbjct: 216 CKEND-----VLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGW 270

Query: 62  LVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKIT 121
            +   P  +    GV   HS         +L  + +      AV  +  +  E ++ ++ 
Sbjct: 271 AIA--PPHLTW--GVRQAHS---------FLTFATATPMQWAAVAAL--RAPESYYEELK 315

Query: 122 DILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFA 181
                  DI  + LKE+     P    G+ FVM           ++++   G  +D  F 
Sbjct: 316 RDYSAKKDILVEGLKEVGFKVYP--SSGTYFVM-----------VDHTPF-GFENDIAFC 361

Query: 182 LKLAKEESIIVLPGITVGL-----KDWLRITFAVEPSAFEIGLGRMK 223
             L +E  +  +P     L     K+ +R  F  +       + RMK
Sbjct: 362 EYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERMK 408

Length = 413

>gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 47/190 (24%), Positives = 74/190 (38%), Gaps = 41/190 (21%)

Query: 42  VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTT 101
           V++ G++SK + +PG R+GW V   P  +L +L           +R+ DY  LS S    
Sbjct: 204 VISFGTLSKAFGLPGLRVGWCVG--PADLLAEL-----------VRLRDYTTLSLSPLVE 250

Query: 102 VGAVPQILEKTEEEFFSKITDILREAAD---ICCDRLKEIP-CITCPKKPEGSM--FVMY 155
           + A    +E  +      I   L EA        D     P  + C   PEG +  F  +
Sbjct: 251 LLAE-VAVEHADA----LIGPRLAEARANRRRLLDWAAAHPDVVRCTP-PEGGVAAFPRF 304

Query: 156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAF 215
            G  D                 T+   +L     ++++PG   G  D +R+ F    +  
Sbjct: 305 PGHADV----------------TDLCRRLLARHGVLLVPGSCFGAADRMRLGFGGSSAEL 348

Query: 216 EIGLGRMKAF 225
             GL R+ AF
Sbjct: 349 RAGLARLSAF 358

Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359

>gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMG-VFGSIVPVLTLGSISKRWIVPGWRLGW 61
           I +  ++  + +I DE+Y ++V+     VP+  V G  VP + L  ISK    PG R GW
Sbjct: 196 IVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGD-VPGIALKGISKELPWPGSRCGW 254

Query: 62  L 62
           +
Sbjct: 255 I 255

Length = 433

>gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 51/223 (22%), Positives = 92/223 (41%), Gaps = 38/223 (17%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVP---MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVT 64
           K+  I+V  D  Y  + F    +     + V G+    +   S+SK + + GWR+G  V 
Sbjct: 194 KEYNIIVCHDNAYSEITFDG--YKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVG 251

Query: 65  SDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDIL 124
           +       DL +A    +  N+   D  +     Y  + A+        ++   +I  I 
Sbjct: 252 N------ADL-IAGLGKVKTNV---DSGVFQAIQYAAIAAL-----NGPQDVVKEIRKIY 296

Query: 125 REAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKL 184
           +   D+  + LK+I  I   +KP+ + +V                + EG  S  EFA +L
Sbjct: 297 QRRRDLLLEALKKIG-IDV-EKPKATFYVWV-------------PVPEGYTS-AEFAARL 340

Query: 185 AKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAF 225
            +E  ++V PG+  G   + ++RI+  V     E  + R+K  
Sbjct: 341 LEETGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKKL 383

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383

>gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 31/194 (15%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVP--MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTS 65
           K+  ++V+ D  Y  +V+ +    P  M V G+    +   ++SK + + GWR+G++V +
Sbjct: 194 KRYDVLVVHDLAYADIVY-DGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGN 252

Query: 66  DPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILR 125
                  +L       +S   R+  Y          V A+  +  + +++    I +  +
Sbjct: 253 ------PEL-------VSALARIKSYHDYGTFTPLQVAAIAAL--EGDQQCVRDIAEQYK 297

Query: 126 EAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLA 185
              D+    L E   +   + P+ SM+V          +   Y+ +  +    EFA KL 
Sbjct: 298 RRRDVLVKGLHEAGWMV--EMPKASMYVW-------AKIPEPYAAMGSL----EFAKKLL 344

Query: 186 KEESIIVLPGITVG 199
            E  + V PGI  G
Sbjct: 345 NEAKVCVSPGIGFG 358

Length = 395

>gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 44/233 (18%)

Query: 3   IEETTKKLGIMVIADEVYGHLVF-GNTHFVPMGV---FGSIVPVLTLGSISKRWIVPGWR 58
           I E   + G+ VI+DE++  LV  G+ H     +   F      +TL S SK + + G +
Sbjct: 183 IAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADN--SITLTSASKTFNLAGLK 240

Query: 59  LGWLVTSDP---NGILQDLGVAFFHSIS-LNMRMDDYLLLSESVYTTVGAVPQILEKTEE 114
             +++ S+       L+ L     H  S L +        +E+ Y              E
Sbjct: 241 CAYIIISNRELRAKFLKRLKRNGLHGPSALGIIA------TEAAY-----------NQGE 283

Query: 115 EFFSKITDILREAADICCDRL-KEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEG 173
            +  ++ + L++  D   D L K +P +    +P+G+    Y       L  L+   L G
Sbjct: 284 PWLDELLEYLKDNRDYVADFLNKHLPGVKV-TEPQGT----Y-------LAWLDCREL-G 330

Query: 174 INSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKA 224
           +  D+E A  L +E  + + PG T G     ++R+ FA   +  E  L R+K 
Sbjct: 331 L-DDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFACPRAILEEALERLKR 382

Length = 388

>gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional

 Score = 39.0 bits (92), Expect = 0.001
 Identities = 50/237 (21%), Positives = 90/237 (37%), Gaps = 78/237 (32%)

Query: 4   EETTKKLG-------------IMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISK 50
           EET K L              I +I+DE Y  +V+     VP  +F      + + S SK
Sbjct: 187 EETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAE-VPY-IFKYYDNSIVVYSFSK 244

Query: 51  RWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSES-VYT--TVGAV-- 105
              +PG R+G++                     +N  M+D   L  + V+    +G V  
Sbjct: 245 SLSLPGERIGYIA--------------------VNPEMEDADDLVAALVFANRILGFVNA 284

Query: 106 PQILEKTEEEFFSKITDILREAADI---------CCDRLKEI--PCITCPKKPEGSMFVM 154
           P ++++        +   L    D+           D L E+   C+    KP+G+ ++ 
Sbjct: 285 PALMQRV-------VAKCLDATVDVSIYKRNRDLLYDGLTELGFECV----KPQGAFYLF 333

Query: 155 YCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVE 211
                     K   S  E    D  F  + AK+ +++++PG   G   + R+++ V+
Sbjct: 334 ---------PK---SPEE---DDVAF-CEKAKKHNLLLVPGSGFGCPGYFRLSYCVD 374

Length = 394

>gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 15  IADEVYGHLVFGNTHFVP-MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 67
           I DEV+ H+VF     +P M + G     + +GS  K + + GW++G+ V + P
Sbjct: 196 ICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGF-VCAAP 248

Length = 387

>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 32/228 (14%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           I    +K  ++V++DE+Y  L +   +     + G     + +   SK + + GWRLG+ 
Sbjct: 179 IAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGF- 237

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
             + P    + +           +++  Y ++         A+  +  +   +   ++ D
Sbjct: 238 -IAAPVYFSEAM-----------LKIHQYSMMCAPTMAQFAALEAL--RAGNDDVIRMRD 283

Query: 123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
             R+  +       EI  +TC   P G+ +     S              G++S+ EFA 
Sbjct: 284 SYRKRRNFFVTSFNEIG-LTCH-VPGGAFYAFPSISS------------TGLSSE-EFAE 328

Query: 183 KLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYR 228
           +L  EE + V+PG   G   + ++R ++A      +  + RMK F   
Sbjct: 329 QLLLEEKVAVVPGSVFGESGEGFIRCSYATSLEQLQEAMKRMKRFVEN 376

Length = 378

>gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           I E  K L I +I DE +   +   T F+P       + VL   S++K + +PG RLG+L
Sbjct: 167 IAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLR--SLTKFYAIPGLRLGYL 224

Query: 63  VTSDPNGILQ 72
           V SD   + +
Sbjct: 225 VNSDDAAVAR 234

Length = 356

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	100.0
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	100.0
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	100.0
PLN02187	462	rooty/superroot1	100.0
PLN02656	409	tyrosine transaminase	100.0
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	100.0
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	100.0
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.98
PTZ00433	412	tyrosine aminotransferase; Provisional	99.97
PRK06855	433	aminotransferase; Validated	99.97
PRK06107	402	aspartate aminotransferase; Provisional	99.97
PRK08636	403	aspartate aminotransferase; Provisional	99.97
PLN00175	413	aminotransferase family protein; Provisional	99.97
PRK06207	405	aspartate aminotransferase; Provisional	99.97
PRK07324	373	transaminase; Validated	99.97
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.97
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.97
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.97
PRK09148	405	aminotransferase; Validated	99.97
PRK06348	384	aspartate aminotransferase; Provisional	99.97
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.97
PRK05957	389	aspartate aminotransferase; Provisional	99.97
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.96
PTZ00377	481	alanine aminotransferase; Provisional	99.96
PRK09082	386	methionine aminotransferase; Validated	99.96
PRK07681	399	aspartate aminotransferase; Provisional	99.96
PRK07682	378	hypothetical protein; Validated	99.96
PRK12414	384	putative aminotransferase; Provisional	99.96
PLN02231	534	alanine transaminase	99.96
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.96
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.96
PRK08912	387	hypothetical protein; Provisional	99.96
PRK09265	404	aminotransferase AlaT; Validated	99.96
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.96
PRK08960	387	hypothetical protein; Provisional	99.96
PRK07568	397	aspartate aminotransferase; Provisional	99.96
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.96
PRK08175	395	aminotransferase; Validated	99.96
PRK08068	389	transaminase; Reviewed	99.96
PRK07683	387	aminotransferase A; Validated	99.96
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.96
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.96
PRK08363	398	alanine aminotransferase; Validated	99.96
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.96
PRK07777	387	aminotransferase; Validated	99.96
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.96
PRK08361	391	aspartate aminotransferase; Provisional	99.96
PRK06108	382	aspartate aminotransferase; Provisional	99.96
PRK07337	388	aminotransferase; Validated	99.96
PRK05764	393	aspartate aminotransferase; Provisional	99.96
PRK09275	527	aspartate aminotransferase; Provisional	99.96
PRK05942	394	aspartate aminotransferase; Provisional	99.96
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.96
PRK05839	374	hypothetical protein; Provisional	99.95
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.95
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.95
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.95
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.95
PRK07550	386	hypothetical protein; Provisional	99.95
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.95
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.94
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.94
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.94
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.94
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.94
PRK06290	410	aspartate aminotransferase; Provisional	99.94
PLN02672	1082	methionine S-methyltransferase	99.94
PRK06836	394	aspartate aminotransferase; Provisional	99.94
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.94
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.94
PLN02397	423	aspartate transaminase	99.93
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.93
PTZ00376	404	aspartate aminotransferase; Provisional	99.93
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.92
PRK07908	349	hypothetical protein; Provisional	99.92
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.92
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.92
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.92
PRK08637	388	hypothetical protein; Provisional	99.92
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.91
PRK06225	380	aspartate aminotransferase; Provisional	99.91
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.91
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.91
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.91
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.9
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.9
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.9
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.9
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.89
PRK08354	311	putative aminotransferase; Provisional	99.89
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.88
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.88
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.88
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.88
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.88
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.87
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.87
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.86
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.86
PLN02368	407	alanine transaminase	99.86
PRK03321	352	putative aminotransferase; Provisional	99.86
PRK09105	370	putative aminotransferase; Provisional	99.86
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.85
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.85
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.85
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.84
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.84
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.83
PLN02822	481	serine palmitoyltransferase	99.79
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.78
PLN02483	489	serine palmitoyltransferase	99.78
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.77
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.76
PRK02627	396	acetylornithine aminotransferase; Provisional	99.76
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.76
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.75
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.75
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.75
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.74
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.73
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.73
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.73
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.71
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.7
PRK13392	410	5-aminolevulinate synthase; Provisional	99.69
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.68
PLN00144	382	acetylornithine transaminase	99.68
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.67
PRK04260	375	acetylornithine aminotransferase; Provisional	99.67
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.66
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.66
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.66
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.65
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	99.64
PRK09064	407	5-aminolevulinate synthase; Validated	99.64
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.63
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.61
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.61
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.6
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.6
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.6
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.6
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.59
PRK07505	402	hypothetical protein; Provisional	99.58
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.57
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.57
PRK10534	333	L-threonine aldolase; Provisional	99.57
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.57
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.57
PRK07179	407	hypothetical protein; Provisional	99.56
PRK13393	406	5-aminolevulinate synthase; Provisional	99.55
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.55
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.54
PLN02624	474	ornithine-delta-aminotransferase	99.54
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.53
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.53
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.53
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.52
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.52
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.51
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.51
PLN02955	476	8-amino-7-oxononanoate synthase	99.5
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.5
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.5
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.5
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.49
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.49
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.47
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.46
PLN02721	353	threonine aldolase	99.45
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.44
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.41
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.41
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.4
PRK02948	381	cysteine desulfurase; Provisional	99.36
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.36
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.34
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.33
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.33
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.33
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.32
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.31
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.29
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.29
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.29
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.29
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.27
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.27
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.27
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.26
PLN02242	418	methionine gamma-lyase	99.25
PRK06460	376	hypothetical protein; Provisional	99.24
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.24
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.23
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.22
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.22
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.22
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.21
PRK07049	427	methionine gamma-lyase; Validated	99.21
PRK06541	460	hypothetical protein; Provisional	99.18
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.18
PRK07678	451	aminotransferase; Validated	99.17
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.16
PLN02409	401	serine--glyoxylate aminotransaminase	99.16
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.14
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.13
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.11
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.11
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.1
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.1
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.1
PRK07582	366	cystathionine gamma-lyase; Validated	99.1
PRK08776	405	cystathionine gamma-synthase; Provisional	99.08
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.07
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.06
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.04
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.03
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.03
PRK06767	386	methionine gamma-lyase; Provisional	99.02
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.02
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.02
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.02
PRK06105	460	aminotransferase; Provisional	99.02
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.01
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.01
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.01
PRK07480	456	putative aminotransferase; Validated	99.01
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.0
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.0
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.0
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.0
PRK08297	443	L-lysine aminotransferase; Provisional	98.98
PTZ00094	452	serine hydroxymethyltransferase; Provisional	98.97
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	98.97
PRK08249	398	cystathionine gamma-synthase; Provisional	98.97
PRK07046	453	aminotransferase; Validated	98.96
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	98.95
PRK12403	460	putative aminotransferase; Provisional	98.95
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	98.95
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	98.94
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	98.93
PRK06062	451	hypothetical protein; Provisional	98.93
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	98.93
PRK06234	400	methionine gamma-lyase; Provisional	98.93
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	98.92
PRK07481	449	hypothetical protein; Provisional	98.92
PRK07483	443	hypothetical protein; Provisional	98.92
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	98.92
PRK07482	461	hypothetical protein; Provisional	98.91
PRK06148	1013	hypothetical protein; Provisional	98.91
PRK06149	972	hypothetical protein; Provisional	98.91
PRK06917	447	hypothetical protein; Provisional	98.9
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	98.9
PRK05965	459	hypothetical protein; Provisional	98.9
PLN03226	475	serine hydroxymethyltransferase; Provisional	98.89
PRK07036	466	hypothetical protein; Provisional	98.89
PRK14012	404	cysteine desulfurase; Provisional	98.89
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	98.88
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	98.88
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	98.88
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	98.87
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	98.86
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	98.85
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	98.85
PRK07811	388	cystathionine gamma-synthase; Provisional	98.85
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	98.85
PRK05968	389	hypothetical protein; Provisional	98.84
PRK08045	386	cystathionine gamma-synthase; Provisional	98.83
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	98.83
PRK07503	403	methionine gamma-lyase; Provisional	98.82
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	98.8
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	98.79
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	98.79
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	98.78
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	98.77
PRK07269	364	cystathionine gamma-synthase; Reviewed	98.76
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	98.75
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	98.73
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	98.73
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	98.69
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	98.64
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	98.63
TIGR01814	406	kynureninase kynureninase. This model describes ky	98.62
PRK08574	385	cystathionine gamma-synthase; Provisional	98.62
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	98.62
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	98.61
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	98.59
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	98.59
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	98.58
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	98.58
PRK08861	388	cystathionine gamma-synthase; Provisional	98.57
PLN02651	364	cysteine desulfurase	98.56
PRK05939	397	hypothetical protein; Provisional	98.56
PRK08064	390	cystathionine beta-lyase; Provisional	98.55
PRK09028	394	cystathionine beta-lyase; Provisional	98.55
PRK07671	377	cystathionine beta-lyase; Provisional	98.54
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	98.52
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	98.51
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	98.51
PRK07050	394	cystathionine beta-lyase; Provisional	98.5
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	98.49
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	98.48
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	98.48
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	98.46
PLN02590	539	probable tyrosine decarboxylase	98.46
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	98.44
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	98.43
PRK05967	395	cystathionine beta-lyase; Provisional	98.41
PLN02509	464	cystathionine beta-lyase	98.41
PRK03080	378	phosphoserine aminotransferase; Provisional	98.4
PLN02271	586	serine hydroxymethyltransferase	98.39
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	98.38
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	98.38
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	98.35
PLN02880	490	tyrosine decarboxylase	98.33
PRK04366	481	glycine dehydrogenase subunit 2; Validated	98.31
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	98.29
PRK15029	755	arginine decarboxylase; Provisional	98.26
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	98.25
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	98.23
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	98.22
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	98.19
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	98.17
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	98.13
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	98.12
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	98.0
PRK08114	395	cystathionine beta-lyase; Provisional	97.99
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	97.97
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	97.97
PLN02452	365	phosphoserine transaminase	97.91
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	97.9
PRK13578	720	ornithine decarboxylase; Provisional	97.88
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	97.87
PLN02724	805	Molybdenum cofactor sulfurase	97.85
PRK13237	460	tyrosine phenol-lyase; Provisional	97.84
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	97.83
PLN02414	993	glycine dehydrogenase (decarboxylating)	97.81
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	97.78
PRK04311	464	selenocysteine synthase; Provisional	97.78
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	97.72
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	97.69
PRK05367	954	glycine dehydrogenase; Provisional	97.69
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	97.67
PRK15400	714	lysine decarboxylase CadA; Provisional	97.65
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	97.63
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	97.62
PRK12566	954	glycine dehydrogenase; Provisional	97.62
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	97.56
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	97.54
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	97.53
PRK02769	380	histidine decarboxylase; Provisional	97.5
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	97.49
PRK15399	713	lysine decarboxylase LdcC; Provisional	97.49
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	97.47
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	97.47
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	97.38
PRK05367	954	glycine dehydrogenase; Provisional	97.35
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	97.34
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	97.32
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	97.29
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	97.28
PRK06434	384	cystathionine gamma-lyase; Validated	97.12
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	97.11
KOG1368	384	consensus Threonine aldolase [Amino acid transport	97.09
PLN02263	470	serine decarboxylase	96.86
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	96.81
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	96.75
PRK12462	364	phosphoserine aminotransferase; Provisional	96.68
PLN02414	993	glycine dehydrogenase (decarboxylating)	96.6
PLN03032	374	serine decarboxylase; Provisional	96.46
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	96.43
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	96.32
COG3844	407	Kynureninase [Amino acid transport and metabolism]	96.02
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	95.97
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	95.92
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	95.65
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	94.86
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	94.82
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	94.33
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	93.56
KOG0629	510	consensus Glutamate decarboxylase and related prot	91.97
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	91.75
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	88.76
PRK12566	954	glycine dehydrogenase; Provisional	81.65

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.8e-37  Score=258.65  Aligned_cols=215  Identities=57%  Similarity=1.011  Sum_probs=200.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      .+|+++|++++++||.||+|.+++|++.++.|+..+....++|+++|+||.|..||||+||++..++..++++...+   
T Consensus       222 ~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~---  298 (447)
T KOG0259|consen  222 KKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKVV---  298 (447)
T ss_pred             HHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCceeeeEEEecccccccchHHH---
Confidence            37999999999999999999999999999999999999999999999999999999999999999987788765555   


Q ss_pred             hhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..+..+.....++.+.. +|+..+|+...++++......++.+.+...+.|+++|++.++.+|+|.+|+|     
T Consensus       299 -----q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylm-----  368 (447)
T KOG0259|consen  299 -----QGIKNFLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLM-----  368 (447)
T ss_pred             -----HHHHHHHhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEE-----
Confidence                 67777777777777777 9999999888999999999999999999999999999999889999999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHhhc
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKK  232 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~~  232 (233)
                          +.++.+-++.+.||.+|+.++.+|+.+.+.||..|+..+|+|++++.+.+.++++++||+.+..++.++
T Consensus       369 ----v~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~~~~~~leea~~Rik~Fc~RH~~~  437 (447)
T KOG0259|consen  369 ----VKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIVITVEEEMLEEAFSRIKEFCDRHSKE  437 (447)
T ss_pred             ----eccchhhhccccccHHHHHHHhhhcceEEeccccccCCCeEEEEEccChHHHHHHHHHHHHHHHhhhhc
Confidence                888888777888999999999999999999999999999999999999999999999999999999854

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=1.8e-34  Score=255.66  Aligned_cols=216  Identities=61%  Similarity=1.089  Sum_probs=170.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|+++|++||+||+|.++.|++..+.++..+...+++|+++||||.|++||||+||++++++..+++..+++   
T Consensus       213 ~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~---  289 (430)
T PLN00145        213 AKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVV---  289 (430)
T ss_pred             HHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHH---
Confidence            36889999999999999999999987755566666666679999999999999999999999986433444321122   


Q ss_pred             hhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..+..+...+.++++.. .++..++....++++++.++.++++++.+.+.|++++++.++..|+||+|+|     
T Consensus       290 -----~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~-----  359 (430)
T PLN00145        290 -----DSIRNYLNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVM-----  359 (430)
T ss_pred             -----HHHHHHhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEE-----
Confidence                 33444433333333433 6666666554578999999999999999999999887776545799999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHhhcC
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ  233 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~~~  233 (233)
                          ++++...+++..++.+++.++++++||.+.||+.|+..+|+||+++.+.+.++++++||.+++.++++++
T Consensus       360 ----v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~~~~~~l~~al~rl~~~~~~~~~~~  429 (430)
T PLN00145        360 ----VKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFAIDPPSLEDGLERLKSFCLRHAKLA  429 (430)
T ss_pred             ----eccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhcccc
Confidence                7776432223335788999999999999999999998899999999999999999999999999998653

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=7.4e-35  Score=254.60  Aligned_cols=202  Identities=25%  Similarity=0.466  Sum_probs=167.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||++||+||+|.++.|++..+.++..+.+ .+++|++.||||.|+++|||+||+++++. .+++   .+  
T Consensus       186 ~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~-~l~~---~~--  259 (393)
T COG0436         186 KAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPE-ELIA---AL--  259 (393)
T ss_pred             HHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChH-HHHH---HH--
Confidence            37999999999999999999999999865566665554 58999999999999999999999999952 4553   23  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcH-HHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTE-EEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                            .+++++...+.+...|.++.+++ +... ..+.+.+++.+++||+.+.+.|++++++.++.+|+|++|+|    
T Consensus       260 ------~~~~~~~~~~~~~~~Q~aa~~aL-~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~----  328 (393)
T COG0436         260 ------RKLKSYLTSCAPTPAQYAAIAAL-NGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLF----  328 (393)
T ss_pred             ------HHHHHhcccCCCHHHHHHHHHHh-cCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEE----
Confidence                  45666666777777775666665 3332 46888899999999999999999988888755599999999    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCC---CcEEEEeecCHHHHHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLK---DWLRITFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~---~~~Rl~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                           ++++..     .|+.+++.++|+++||.|+||+.|+..   +|+|+|++.+.+.++++++++.++++.+
T Consensus       329 -----~~i~~~-----~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~~~~~l~~a~~rl~~~~~~~  392 (393)
T COG0436         329 -----PKIPEL-----LDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLARFLAEY  392 (393)
T ss_pred             -----eecCCC-----CCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEecCHHHHHHHHHHHHHHHHhc
Confidence                 555532     369999999999999999999999964   8999999998899999999999998764

>PLN02187 rooty/superroot1

Probab=100.00  E-value=1.4e-33  Score=251.78  Aligned_cols=215  Identities=48%  Similarity=0.929  Sum_probs=165.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|.++.|++..+.++..+....++|+++||||.|++||+|+||+++++++.+++.++.+   
T Consensus       227 ~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~---  303 (462)
T PLN02187        227 KKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVL---  303 (462)
T ss_pred             HHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCccceeEEEEecCchhHHHHHHHH---
Confidence            36899999999999999999999997755556665655567999999999999999999999996532222100111   


Q ss_pred             hhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..++....++.+++... .+++++++...++|+++.++.++++++.+.+.|++++....+..|+||+|+|     
T Consensus       304 -----~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~-----  373 (462)
T PLN02187        304 -----QSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLL-----  373 (462)
T ss_pred             -----HHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEE-----
Confidence                 33333333333333433 6666666544568999999999999999999999886554345799999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHhhc
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKK  232 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~~  232 (233)
                          ++++.....++.++.+++.++++++||.+.||+.|+..+|+||+++.+++.++++++||.++++++.++
T Consensus       374 ----~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~~~~e~l~~al~rL~~~l~~~~~~  442 (462)
T PLN02187        374 ----TKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDALERLKGFCTRHAKK  442 (462)
T ss_pred             ----eecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhhhc
Confidence                666533222333467888899999999999999998889999999999999999999999999988765

>PLN02656 tyrosine transaminase

Probab=100.00  E-value=2.3e-32  Score=240.91  Aligned_cols=215  Identities=64%  Similarity=1.150  Sum_probs=162.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|.+|.|++..+.++..++..+++|+++||||.|++||+|+||++++++..++..-.++   
T Consensus       192 ~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~---  268 (409)
T PLN02656        192 KKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIV---  268 (409)
T ss_pred             HHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEEEEEeCcccccccHHHH---
Confidence            36899999999999999999999998755556655666678999999999999999999999996421111000222   


Q ss_pred             hhhhHHhhhhhhhh--ccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           81 SISLNMRMDDYLLL--SESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        81 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                           .++......  +.+...| .++..+++...+.++++.++.++++++.+.+.|+++++...+..|+||+|+|    
T Consensus       269 -----~~~~~~~~~~~~~s~~~q-~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w----  338 (409)
T PLN02656        269 -----ERIKKYFDILGGPATFIQ-AAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVM----  338 (409)
T ss_pred             -----HHHHHHHhhhcCCCHHHH-HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEE----
Confidence                 333322222  2223333 6666666544567899999999999999999998876544335799999999    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHhhcC
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ  233 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~~~  233 (233)
                           ++++........++.+++.++++++||.++||+.|+..+|+||+++.+++.++++++||++++.++..+|
T Consensus       339 -----~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~~~e~l~eal~rl~~~~~~~~~~~  408 (409)
T PLN02656        339 -----VKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFAADPSSLEEALGRIKSFYLRHSKTQ  408 (409)
T ss_pred             -----EecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhcccc
Confidence                 6665321112223567888899999999999999988899999999999999999999999998887654

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=4.1e-32  Score=239.33  Aligned_cols=214  Identities=63%  Similarity=1.074  Sum_probs=161.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|.++.+++..+.++..+...+++|+++||||.|++||+|+||++++++..+++.+..+   
T Consensus       193 ~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~---  269 (409)
T PLN00143        193 NKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIA---  269 (409)
T ss_pred             HHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHHH---
Confidence            36899999999999999999999987654455555666678999999999999999999999995432333211112   


Q ss_pred             hhhhHHhhhhhhhh--ccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           81 SISLNMRMDDYLLL--SESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        81 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                           ..+......  ..+...| .+++.++++....++++.++.++++++.+.+.|++++....+..|+||+|+|    
T Consensus       270 -----~~~~~~~~~~~~~~~~~q-~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w----  339 (409)
T PLN00143        270 -----DSIKKALNPAPFPPTFIQ-AAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFAL----  339 (409)
T ss_pred             -----HHHHHHHhccCCCCchHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEE----
Confidence                 223222211  1223333 5666666544567899999999999999999998875544335799999999    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHhhc
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKK  232 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~~  232 (233)
                           ++++....++..++.+++.++++++||.++||+.|+.++|+||+++.+.++++++++||.++++++.++
T Consensus       340 -----~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~~~~~l~~al~rl~~~l~~~~~~  408 (409)
T PLN00143        340 -----VKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAVEQSSLEDGLGRLKSFCGRHAKK  408 (409)
T ss_pred             -----EecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEcCCHHHHHHHHHHHHHHHHHhccC
Confidence                 655421111222477888889899999999999998889999999999999999999999999988754

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=100.00  E-value=3.7e-31  Score=232.92  Aligned_cols=211  Identities=49%  Similarity=0.900  Sum_probs=160.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|+++|++||+||+|.++.+++..+.++..+....++|+++||||.|++||+|+||+++++++.++.. .++   
T Consensus       192 ~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~-~~~---  267 (403)
T TIGR01265       192 QKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRD-TVL---  267 (403)
T ss_pred             HHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcceEEEEEEeCchhhhHH-HHH---
Confidence            3689999999999999999999998875555666666666899999999999999999999999643122211 122   


Q ss_pred             hhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..+..+.....+++... .+++.++....+.++++.++.++++++.+.+.|+.++++. +..|+||+|+|     
T Consensus       268 -----~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~p~~g~f~~-----  336 (403)
T TIGR01265       268 -----QGLKNLLQRILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLV-CPKPEGAMYLM-----  336 (403)
T ss_pred             -----HHHHHHhhhhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCce-ecCCCceeEEE-----
Confidence                 33333322222233333 6666666555568999999999999999999998876665 36799999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                          ++++.....+..++.+++.++++++||.|.||+.|+..+|+|+|++.+++++++++++|.+++++++
T Consensus       337 ----~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~~~~~l~~~l~~l~~~~~~~~  403 (403)
T TIGR01265       337 ----VKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITITVPESMLEEACSRIKEFCERHA  403 (403)
T ss_pred             ----EeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHhcC
Confidence                6665321111224677778888899999999999988899999999988999999999999997763

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.98  E-value=8e-31  Score=230.57  Aligned_cols=207  Identities=32%  Similarity=0.674  Sum_probs=157.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|+++|++||+||+|.+|.+++..+.++..+....++|+++||||.|++||+|+||++++++...+.  .++    
T Consensus       192 ~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~--~~~----  265 (401)
T TIGR01264       192 EILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILR--DIR----  265 (401)
T ss_pred             HHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEEEEecCcchhHH--HHH----
Confidence            68999999999999999999999877555566666555579999999999999999999999986322221  122    


Q ss_pred             hhhHHhhhhhh--hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           82 ISLNMRMDDYL--LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        82 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                          ..+....  ..+.+...| .++..++.+..++++++.++.++++++.+.+.|++++++. +..|+||+|+|     
T Consensus       266 ----~~~~~~~~~~~~~~~~~q-~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~-~~~p~~g~f~~-----  334 (401)
T TIGR01264       266 ----DGLVKLSQRILGPCTIVQ-GALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLR-PVMPSGAMYMM-----  334 (401)
T ss_pred             ----HHHHHHhhccCCCCcHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccCCCeeeEEE-----
Confidence                3332222  223333344 5556666544568999999999999999999999886655 36799999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                          ++++....++..++.+++.++++++||.|.||+.|+..+|+|++++.+++++++++++|.++++++
T Consensus       335 ----~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~~~~~l~~~l~rl~~~~~~~  400 (401)
T TIGR01264       335 ----VGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTVPVVMMEEACSRIQEFCERH  400 (401)
T ss_pred             ----EEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence                655421111222467778888888999999999998789999999998899999999999998754

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.97  E-value=1.7e-30  Score=229.26  Aligned_cols=210  Identities=32%  Similarity=0.522  Sum_probs=158.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|.+|.+++....++..++...++|+++||||.|++||+|+||+++++++...+  .++   
T Consensus       200 ~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~--~~~---  274 (412)
T PTZ00433        200 EDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGG--DFL---  274 (412)
T ss_pred             HHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCCCeeEEEEEEeCCcccHH--HHH---
Confidence            368999999999999999999999876544556556554578999999999999999999999842211111  122   


Q ss_pred             hhhhHHhhhhhhh--hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           81 SISLNMRMDDYLL--LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        81 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                           ..+.....  .+.+...| .++..++.+..+.++++.++.++++++.+.+.|++..++. +..|+||+|+|    
T Consensus       275 -----~~~~~~~~~~~~~~~~~q-~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~p~gg~f~~----  343 (412)
T PTZ00433        275 -----DGMKRLGMLVCGPCSVVQ-AALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLS-PTMPRGSMFLM----  343 (412)
T ss_pred             -----HHHHHHhhccCCCChHHH-HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-ccCCCeeEEEE----
Confidence                 33333222  23333333 5555555444568999999999999999999998864555 37899999999    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHhh
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                           ++++...+.+..++.+++.++++++||.|.||+.|+..+|+|+|++.+++++++++++|.++++++++
T Consensus       344 -----~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~l~~al~~l~~~~~~~~~  411 (412)
T PTZ00433        344 -----SRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISRPVEVLREAVERIKAFCERHKK  411 (412)
T ss_pred             -----EEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhcc
Confidence                 77654222122246778888887889999999999888999999999889999999999999988764

>PRK06855 aminotransferase; Validated

Probab=99.97  E-value=3.5e-30  Score=228.58  Aligned_cols=208  Identities=18%  Similarity=0.348  Sum_probs=156.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCC--Cccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP--NGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~--~~~~~~~~~~~   78 (233)
                      ++|+++|++||++||+||+|.++.|++..+.++..+.++.++|+++||||.|++||+|+||+++++.  ...+.  .++ 
T Consensus       194 ~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~--~~~-  270 (433)
T PRK06855        194 REIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFK--KYI-  270 (433)
T ss_pred             HHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEeCCchhhHHH--HHH-
Confidence            3689999999999999999999999775556666665545789999999999999999999998531  01111  122 


Q ss_pred             hhhhhhHHhhhhhh--hhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEE
Q 047983           79 FHSISLNMRMDDYL--LLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        79 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~  155 (233)
                             ..+....  ..+.+...| .+++.++++. .+++++++++.+++|++.+.+.|++++++.. .+|+||||+| 
T Consensus       271 -------~~~~~~~~~~~~~~~~~Q-~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~-~~p~gg~~~w-  340 (433)
T PRK06855        271 -------NSILNAKMIEVCSTTLPQ-MAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLKV-NRTNGAFYMT-  340 (433)
T ss_pred             -------HHHHHhhccccCCChHHH-HHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCeec-cCCCeeEEEe-
Confidence                   2222221  123333333 6666666554 4789999999999999999999988766653 7899999999 


Q ss_pred             ecCCCccccccccccc-----CC-----------------CCChHHHHHHHHhccCEEEECCcccCC-CCcEEEEeec-C
Q 047983          156 CGSEDKCLLKLNYSLL-----EG-----------------INSDTEFALKLAKEESIIVLPGITVGL-KDWLRITFAV-E  211 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~-----~~-----------------~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~Rl~~~~-~  211 (233)
                              ++++....     ..                 ..++.+++..+++++||.+.||+.|+. .+++|+|++. +
T Consensus       341 --------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~~~  412 (433)
T PRK06855        341 --------VVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLLERD  412 (433)
T ss_pred             --------eccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEECCCc
Confidence                    55543210     00                 114678888999999999999999975 4579999996 8


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 047983          212 PSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       212 ~~~l~~~~~~l~~~l~~~  229 (233)
                      .+++++++++|.++++++
T Consensus       413 ~~~i~~~~~~l~~~~~~~  430 (433)
T PRK06855        413 EEKFEWIYQTLAEKIEEY  430 (433)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999875

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.97  E-value=6.2e-30  Score=225.06  Aligned_cols=203  Identities=17%  Similarity=0.363  Sum_probs=157.2

Q ss_pred             hHHHHHHHc-CcEEEEccccCccccCCCccccccccCC--ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            2 CIEETTKKL-GIMVIADEVYGHLVFGNTHFVPMGVFGS--IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         2 ~i~~l~~~~-~~~lI~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      +|+++|++| ++++|+||+|.++.|++..+.++..+..  .+++|+++||||.|++||+|+||+++++  ++++.   + 
T Consensus       190 ~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~--~~~~~---~-  263 (402)
T PRK06107        190 ALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPA--DLIAA---I-  263 (402)
T ss_pred             HHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCH--HHHHH---H-
Confidence            678999998 9999999999999887755555555533  4689999999999999999999999987  44421   1 


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                             ..+......+.+...| .+++.++.. .+.++++.++.++++++.+.+.|++++++.. .+|+||+|+|    
T Consensus       264 -------~~~~~~~~~~~s~~~q-~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~-~~p~gg~~~~----  329 (402)
T PRK06107        264 -------NKLQSQSSSCPSSISQ-AAAAAALNG-DQSFVTESVAVYKQRRDYALALLNAIPGLSC-LVPDGAFYLY----  329 (402)
T ss_pred             -------HHHHHhcccCCChHHH-HHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-cCCCcceEEe----
Confidence                   2333333334444444 666666643 3678999999999999999999988766664 7899999999    


Q ss_pred             CCcccccccc------cccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNY------SLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       159 ~~~~~~~~~~------~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                           ++++.      +......++.+++.++++++||.++||+.|+..+|+|++++.+.+++++++++|.+++++.
T Consensus       330 -----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~~~~e~l~~~l~~l~~~l~~~  401 (402)
T PRK06107        330 -----VNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIATSLETLEEACARIERAVAAL  401 (402)
T ss_pred             -----eecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence                 55421      1000112467888899999999999999998889999999999999999999999988653

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.97  E-value=1.3e-29  Score=223.03  Aligned_cols=203  Identities=19%  Similarity=0.298  Sum_probs=154.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||++||+||+|.++.+++....++..++. .+++|+++||||.|++||+|+||+++++  .+++.   +  
T Consensus       198 ~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~~--~li~~---~--  270 (403)
T PRK08636        198 ERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGNK--KLVGA---L--  270 (403)
T ss_pred             HHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccceeeeeeCCH--HHHHH---H--
Confidence            36899999999999999999999987655556666644 3578899999999999999999999987  44421   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                            .++......+.+.+.+ .+...++ ...++++++.++.++++++.+.+.|++. ++. +..|+||+|+|     
T Consensus       271 ------~~~~~~~~~~~~~~~q-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~p~~g~~~~-----  335 (403)
T PRK08636        271 ------KKIKSWLDYGMFTPIQ-VAATIAL-DGDQSCVEEIRETYRKRRDVLIESFANA-GWE-LQKPRASMFVW-----  335 (403)
T ss_pred             ------HHHHHHhcccCChHHH-HHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCCCcceEEE-----
Confidence                  2222222233333344 3333333 2346789999999999999999999887 454 36899999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHHhh
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                          ++++... ..+ ++.+++.++++++||.+.||+.|+.  .+|+||+++.+.+++++++++|.++++++++
T Consensus       336 ----~~l~~~~-~~~-~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~~~rl~~~l~~~~~  403 (403)
T PRK08636        336 ----AKIPEPA-RHL-GSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIENENRIRQAARNIKKFLKELEG  403 (403)
T ss_pred             ----EECCCcc-CCC-CHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEecCCHHHHHHHHHHHHHHHHhhcC
Confidence                6654211 011 3567777888889999999999975  5899999998999999999999999988653

>PLN00175 aminotransferase family protein; Provisional

Probab=99.97  E-value=7.3e-30  Score=225.27  Aligned_cols=196  Identities=21%  Similarity=0.399  Sum_probs=153.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++|+++||+||+|.++.+++. +.++..+.. .+++|+++||||.|++||+|+||+++++  ++++.   +   
T Consensus       211 ~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~--~l~~~---l---  281 (413)
T PLN00175        211 LIASLCKENDVLAFTDEVYDKLAFEGD-HISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP--HLTWG---V---  281 (413)
T ss_pred             HHHHHHHHcCcEEEEecccCccccCCc-ccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCH--HHHHH---H---
Confidence            689999999999999999999998753 335555543 5789999999999999999999999987  44431   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                           ........++.+.+.| .+++.+++. .+.++++.++.+++|++.+.+.|++. ++.. ..|+||+|+|      
T Consensus       282 -----~~~~~~~~~~~s~~~Q-~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~p~g~~f~~------  346 (413)
T PLN00175        282 -----RQAHSFLTFATATPMQ-WAAVAALRA-PESYYEELKRDYSAKKDILVEGLKEV-GFKV-YPSSGTYFVM------  346 (413)
T ss_pred             -----HHHHhhccCCCCHHHH-HHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHC-CCee-cCCCeeEEEE------
Confidence                 3333333445555555 555555543 36789999999999999999999887 4553 6899999999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-----CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-----KDWLRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----~~~~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                         ++++..   +..++.+++.++++++||.+.||+.|+.     .+|+|++++.+++++++++++|.++++
T Consensus       347 ---~~~~~~---~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~~~e~l~~~~~rL~~~~~  412 (413)
T PLN00175        347 ---VDHTPF---GFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERMKTKLK  412 (413)
T ss_pred             ---Eecccc---CCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHh
Confidence               554211   2224678888888889999999999952     479999999999999999999998875

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.97  E-value=1.3e-29  Score=223.31  Aligned_cols=200  Identities=19%  Similarity=0.312  Sum_probs=152.2

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccC-CccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||++||+||+|.++.|++..+.++..+. ..+++|+++||||.|++||+|+||+++++  .+++.+      
T Consensus       202 ~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~~--~l~~~~------  273 (405)
T PRK06207        202 QIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGSP--AIIDRM------  273 (405)
T ss_pred             HHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcCH--HHHHHH------
Confidence            689999999999999999999998775444454443 35799999999999999999999999887  444321      


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                           .........+.+...| .++..+++. ...++++.++.++++++.+.+.|++++++.. ..|+||+|+|      
T Consensus       274 -----~~~~~~~~~~~~~~~q-~a~~~~l~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~~p~gg~fl~------  339 (405)
T PRK06207        274 -----EKLQAIVSLRAAGYSQ-AVLRTWFSE-PDGWMKDRIARHQAIRDDLLRVLRGVEGVFV-RAPQAGSYLF------  339 (405)
T ss_pred             -----HHHHhHhccCCCHHHH-HHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHhcCCCcee-cCCCeeEEEE------
Confidence                 2222322333333344 555556543 2356777788889999999999988766653 6799999999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                         ++++..   +. ++.+++..+++++||.|.||+.|+.  .+|+|||++.+.++++++++||.+++++++
T Consensus       340 ---~~l~~~---~~-~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~~~~~l~~al~rl~~~l~~~~  404 (405)
T PRK06207        340 ---PRLPRL---AV-SLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQDHAAAVAAAERIAQLIERYR  404 (405)
T ss_pred             ---EeCccc---CC-CHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence               665421   11 3567777777788999999999975  689999999989999999999999998875

>PRK07324 transaminase; Validated

Probab=99.97  E-value=9.5e-30  Score=221.82  Aligned_cols=197  Identities=22%  Similarity=0.417  Sum_probs=155.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|.++.+++. +.++.  +..+++|+++||||.|++||+|+||+++++  .+++.   +   
T Consensus       176 ~~i~~~a~~~~~~ii~De~y~~l~~~~~-~~s~~--~~~~~~I~~~s~SK~~~~~G~RiG~i~~~~--~li~~---~---  244 (373)
T PRK07324        176 EEIVEIARSVDAYVLSDEVYRPLDEDGS-TPSIA--DLYEKGISTNSMSKTYSLPGIRVGWIAANE--EVIDI---L---  244 (373)
T ss_pred             HHHHHHHHHCCCEEEEEccccccccCCC-CCChh--hccCCEEEEecchhhcCCccceeEEEecCH--HHHHH---H---
Confidence            3688999999999999999999988653 33333  234678999999999999999999999976  45532   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                           .+++.+.+++.+..++..+... + ...+.++++.++.+++|++.+.+.|++.+++. +..|+||+|+|      
T Consensus       245 -----~~~~~~~~~~~~~~~q~~a~~~-l-~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~-~~~p~gg~~~~------  310 (373)
T PRK07324        245 -----RKYRDYTMICAGVFDDMLASLA-L-EHRDAILERNRKIVRTNLAILDEWVAKEPRVS-YVKPKAVSTSF------  310 (373)
T ss_pred             -----HHHhCcEEecCChHHHHHHHHH-H-cCHHHHHHHHHHHHHHHHHHHHHHHhcCCCce-EECCCceEEEE------
Confidence                 3334433444444444333333 3 34567899999999999999999998876665 37899999999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                         ++++.+.     ++.+++.++++++||.|.||+.|+.++|+|++++.+++.++++++||.++++++.
T Consensus       311 ---i~~~~~~-----~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~~~~~~l~~~l~rl~~~l~~~~  372 (373)
T PRK07324        311 ---VKLDVDM-----PSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCCDTETLKKGLKKLSEFLREFD  372 (373)
T ss_pred             ---EEeCCCC-----CHHHHHHHHHHhcCEEEECccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHhcc
Confidence               6676432     4788999999999999999999998899999999999999999999999998763

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.97  E-value=1e-29  Score=226.54  Aligned_cols=200  Identities=25%  Similarity=0.439  Sum_probs=163.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++||++||+||.|++|.+++.+..++.+++..++||+++||||. ..||+|+||+++|+  .+++.   .    
T Consensus       251 ~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~-l~PglRlG~vv~p~--~~~~~---~----  320 (459)
T COG1167         251 ALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKT-LAPGLRLGYVVAPP--ELIEK---L----  320 (459)
T ss_pred             HHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhh-cccccceeeeeCCH--HHHHH---H----
Confidence            78999999999999999999999998777788889989999999999999 89999999999998  45532   1    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCCccEEEEEecCC
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKE-IPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                          ...+.......+...| .+++..+.++ .++|++++++.|++|++.+.++|++ .++...+..|+||+|+|     
T Consensus       321 ----~~~k~~~~~~~s~~~Q-~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flw-----  390 (459)
T COG1167         321 ----LRLKQAADLGPSSLSQ-AALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLW-----  390 (459)
T ss_pred             ----HHHHHHhcCCCChHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEE-----
Confidence                3444444444444444 6666666654 6899999999999999999999999 55455578999999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEEC-CcccCC----CCcEEEEeec-CHHHHHHHHHHHHHHHHHHhh
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLP-GITVGL----KDWLRITFAV-EPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~----~~~~Rl~~~~-~~~~l~~~~~~l~~~l~~~~~  231 (233)
                          ++++.+.      +...+...+.++||.+.| |..|..    .+++|++++. +.+++++++.+|.+.+.+...
T Consensus       391 ----l~l~~~~------~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~~~~  458 (459)
T COG1167         391 ----LELPEGI------DARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLREAAA  458 (459)
T ss_pred             ----EEcCCCC------CHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHhc
Confidence                7776532      455555556677999999 988875    3589999998 899999999999999988754

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.97  E-value=2.4e-29  Score=227.71  Aligned_cols=207  Identities=19%  Similarity=0.415  Sum_probs=152.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|.+|.|++..+.++..+.++..+++++||||.|++||||+||++++.+..+++  .++   
T Consensus       304 ~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~--~~~---  378 (517)
T PRK13355        304 QQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAK--DYI---  378 (517)
T ss_pred             HHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccceEEEEeeCchhhHH--HHH---
Confidence            368999999999999999999999987555566656554568889999999999999999999764323322  122   


Q ss_pred             hhhhHHhhhhh--hhhccCcchHHHHHHHHhhhc--HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           81 SISLNMRMDDY--LLLSESVYTTVGAVPQILEKT--EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                           ..+...  ...+.+...| .+....+...  .++++...++. .++++.+.+.|++++++.+ .+|+|+||+|  
T Consensus       379 -----~~l~~~~~~~~~~~~~~q-~a~~~aL~~~~~~~~~~~~~~~~-~~~r~~l~~~L~~~~g~~~-~~p~g~fy~~--  448 (517)
T PRK13355        379 -----EGLNMLANMRLCSNVPAQ-SIVQTALGGHQSVKDYLVPGGRV-YEQRELVYNALNAIPGISA-VKPKAAFYIF--  448 (517)
T ss_pred             -----HHHHHHhcCcCCcChHHH-HHHHHHhcCCccHHHHHHHHHHH-HHHHHHHHHHHhcCCCccc-CCCCeeeEEE--
Confidence                 222211  1233333444 3334444322  34566665444 4568999999998877775 7999999999  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                             ++++.... ++.++.+++.++|+++||.|+||+.|+.  ++|+|++++.++++++++++||.+++++++
T Consensus       449 -------~~l~~~~~-~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~~~~~~l~~a~~rl~~~~~~~~  516 (517)
T PRK13355        449 -------PKIDVKKF-NIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRLEDLEDAMDRLADFFSYYR  516 (517)
T ss_pred             -------eecCcccC-CCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeCCCHHHHHHHHHHHHHHHHHhh
Confidence                   66653221 2235778999999999999999999974  689999998899999999999999998764

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.97  E-value=1.7e-29  Score=221.31  Aligned_cols=197  Identities=18%  Similarity=0.291  Sum_probs=148.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCc-cccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTH-FVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~-~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++|++||++||+||+|.++.+++.. +.++..++. .+++|+++||||.|++||+|+||+++++  ++++.   + 
T Consensus       188 ~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~--~li~~---l-  261 (388)
T PRK07366        188 QEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNA--QLIQA---L-  261 (388)
T ss_pred             HHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcCCH--HHHHH---H-
Confidence            36899999999999999999999987643 445555544 3578999999999999999999999887  34421   1 


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                             ..++.....+.....+..+++.+.  ..++++++.++.++++++.+.+.|+++ ++. +..|+||+|+|    
T Consensus       262 -------~~~~~~~~~~~~~~~~~~a~~~l~--~~~~~l~~~~~~~~~~r~~l~~~L~~~-~~~-~~~p~~g~f~~----  326 (388)
T PRK07366        262 -------RQVKAVVDFNQYRGILNGAIAALT--GPQATVQQTVQIFRQRRDAFINALHQI-GWP-VPLPEATMYVW----  326 (388)
T ss_pred             -------HHHHhhcccCCCHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCCCeeEEEE----
Confidence                   222222222211111225566653  246799999999999999999999887 554 36799999999    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                           ++++...  . .++.+++.++++++||.|+||+.|+.  .+|+||+++.+.+++++++++|.+++
T Consensus       327 -----~~~~~~~--~-~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl~~~l  388 (388)
T PRK07366        327 -----AKLPEPW--Q-GNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVHDPDILEEAVERIAAFL  388 (388)
T ss_pred             -----EECCccc--C-CCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecCCHHHHHHHHHHHHHhC
Confidence                 6554210  1 13567777888899999999999975  58999999988999999999998763

>PRK09148 aminotransferase; Validated

Probab=99.97  E-value=4.6e-29  Score=219.75  Aligned_cols=202  Identities=17%  Similarity=0.321  Sum_probs=154.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||++||+||+|.++.+++..+.++..++. .+++|+++||||.|++||+|+||+++++  .+++.   +   
T Consensus       189 ~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~~~--~~i~~---l---  260 (405)
T PRK09148        189 DVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGNE--RLIAA---L---  260 (405)
T ss_pred             HHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeCCH--HHHHH---H---
Confidence            6899999999999999999999887644444544432 4578999999999999999999999977  44431   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                           .+++.+...+.+.+.| .++..+++. .++++++.++.++++++.+.+.|+++ ++. +..|+||+|+|      
T Consensus       261 -----~~~~~~~~~~~~~~~q-~~~~~~L~~-~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~-~~~p~~g~f~~------  325 (405)
T PRK09148        261 -----TRVKSYLDYGAFTPIQ-VAATAALNG-PQDCIAEMRELYKKRRDVLVESFGRA-GWD-IPPPAASMFAW------  325 (405)
T ss_pred             -----HHHHHHhccCCChHHH-HHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHc-CCc-cCCCCeeEEEE------
Confidence                 3333333444444444 444555543 36789999999999999999999886 454 36799999999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHHhh
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                         ++++... ... ++.++...+++++||.|+||+.|+.  ++|+||+++.+.+.+.+++++|.+++.++..
T Consensus       326 ---~~l~~~~-~~~-~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~~~~~l~~al~~l~~~l~~~~~  393 (405)
T PRK09148        326 ---APIPEAF-RHL-GSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVENEQRIRQAARNIKRFLSSADE  393 (405)
T ss_pred             ---EECCCcc-CCC-CHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence               6554211 011 2567777788889999999999975  5899999998899999999999999988753

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.97  E-value=3.4e-29  Score=219.12  Aligned_cols=195  Identities=25%  Similarity=0.500  Sum_probs=149.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccC-CccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++|+++||+||+|.++.+++ .+.++..+. ..+++|+++||||.|++||+|+||+++++  .+++.   +  
T Consensus       185 ~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~--~~~~~---~--  256 (384)
T PRK06348        185 EEIAKIAIEYDLFIISDEVYDGFSFYE-DFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPD--YIIET---A--  256 (384)
T ss_pred             HHHHHHHHHCCeEEEEecccccceeCC-CccchhhcCCCcCcEEEEecchhccCCccccceeeecCH--HHHHH---H--
Confidence            368999999999999999999999875 333454444 25789999999999999999999999987  34321   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                            ..+.....++.+...| .+.+.++. ..++++++.++.+++|++.+.+.|+.++++.+ .+|+||+|+|     
T Consensus       257 ------~~~~~~~~~~~~~~~q-~~~~~~l~-~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~-~~p~gg~~~~-----  322 (384)
T PRK06348        257 ------KIINEGICFSAPTISQ-RAAIYALK-HRDTIVPLIKEEFQKRLEYAYKRIESIPNLSL-HPPKGSIYAF-----  322 (384)
T ss_pred             ------HHHHHhccCCCCHHHH-HHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHhcCCCcee-ccCCeeEEEE-----
Confidence                  2333333344444444 44444443 34678899999999999999999988766553 7899999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAF  225 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~  225 (233)
                          ++++...   . ++.+++..+++++||.|.||+.|+.  .+++|+|++.+.+++++++++|.++
T Consensus       323 ----~~~~~~~---~-~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~  382 (384)
T PRK06348        323 ----INIKKTG---L-SSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTVGIEVLEEAFNRIEKM  382 (384)
T ss_pred             ----EecccCC---C-CHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecCCHHHHHHHHHHHHhh
Confidence                6654211   1 4677788888889999999999986  5899999988899999999999754

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.97  E-value=3.6e-29  Score=209.95  Aligned_cols=198  Identities=24%  Similarity=0.406  Sum_probs=164.4

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCc--cCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSI--VPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~--~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++|++||+.||+||+|.+++++|+.+.++.++++.  ++.|++.|.||+|+++|+++++++++++  -.+. ++.  
T Consensus       182 ~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~--~lr~-~~~--  256 (388)
T COG1168         182 KIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNR--ELRA-KFL--  256 (388)
T ss_pred             HHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCH--HHHH-HHH--
Confidence            68999999999999999999999999888888888764  8999999999999999999999999984  2211 222  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCCccEEEEEe
Q 047983           80 HSISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKE-IPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~  156 (233)
                            .++......  +++...  +..+++  ..+.+|++++.++++.|++++.+.+++ +|++.. ..|+|.|.+|  
T Consensus       257 ------~~l~~~~~~--~~n~lg~~A~~aAY--~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v-~~p~gTYL~W--  323 (388)
T COG1168         257 ------KRLKRNGLH--GPSALGIIATEAAY--NQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKV-TEPQGTYLAW--  323 (388)
T ss_pred             ------HHHHHhcCC--CCchHHHHHHHHHH--HhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcEE-ecCCCceeee--
Confidence                  333321112  233333  555565  567899999999999999999999988 889886 8999999999  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~  228 (233)
                               ++++.+ ++ ++.+....++.+.+|.+.+|+.||.  ++|+|++++++.+.++++++||...++.
T Consensus       324 ---------LD~r~l-~l-~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~acpr~~L~eal~ri~~al~~  386 (388)
T COG1168         324 ---------LDCREL-GL-DDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFACPRAILEEALERLKRALKK  386 (388)
T ss_pred             ---------eecccc-CC-ChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCCCHHHHHHHHHHHHHHHhc
Confidence                     888775 33 4678888999999999999999997  6899999999999999999999988764

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.97  E-value=6.7e-29  Score=217.60  Aligned_cols=197  Identities=21%  Similarity=0.361  Sum_probs=150.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcccccccc-CCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|+++|++||+||+|.++.+++....++..+ +...++|+++||||.|++||+|+||+++++  +++         
T Consensus       184 ~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~--~~~---------  252 (389)
T PRK05957        184 AVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPI--HLL---------  252 (389)
T ss_pred             HHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCH--HHH---------
Confidence            68999999999999999999999875433333333 455789999999999999999999999987  344         


Q ss_pred             hhhhHHhhhhhh---hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYL---LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                           .++....   ..+.+...| .++...++. ...++++.++.++++++.+.+.|++++++..+.+|+||+|+|   
T Consensus       253 -----~~~~~~~~~~~~~~~~~~q-~~~~~~l~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~---  322 (389)
T PRK05957        253 -----EAIKKIQDTILICPPVVSQ-YAALGALQV-GKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCF---  322 (389)
T ss_pred             -----HHHHHHHhhcccCCCcHHH-HHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEE---
Confidence                 3333322   233333344 444444432 345778888889999999999998876642346799999999   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeec-CHHHHHHHHHHHHHHHHHHh
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAV-EPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~-~~~~l~~~~~~l~~~l~~~~  230 (233)
                            ++++.    ++ ++.+++.++++++||.+.||+.|+.  ++|+|++++. +.+++++++++|.+.++.+-
T Consensus       323 ------~~~~~----~~-~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~~~~~  387 (389)
T PRK05957        323 ------LKVNT----DL-NDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGLKTIV  387 (389)
T ss_pred             ------EeCCC----CC-ChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHHhhh
Confidence                  66543    22 4778888888889999999999976  4699999986 89999999999999987753

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.96  E-value=8.6e-29  Score=220.07  Aligned_cols=202  Identities=22%  Similarity=0.332  Sum_probs=153.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcccccccc----C--C-ccCEEEEccCccccCCCCceEEEEEecCCCccccc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVF----G--S-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD   73 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~----~--~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~   73 (233)
                      ++|+++|++||++||+||+|.++.|++.++.++..+    +  + .++++++.|+||.|++||+|+||+++.++      
T Consensus       223 ~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~------  296 (447)
T PLN02607        223 EDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYND------  296 (447)
T ss_pred             HHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCH------
Confidence            368999999999999999999999887555555432    1  1 46899999999999999999999999652      


Q ss_pred             cchhhhhhhhhHHhhhhhhhh-ccCcchHHHHHHHHhhhcH--HHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcc
Q 047983           74 LGVAFFHSISLNMRMDDYLLL-SESVYTTVGAVPQILEKTE--EEFFSKITDILREAADICCDRLKEIPCITCPKKPEGS  150 (233)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g  150 (233)
                       .++        ..++....+ ..+..+| .+++.++++..  ++++...+++++++++.+.+.|++. ++. +.+|+||
T Consensus       297 -~l~--------~~~~~~~~~~~~s~~~q-~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~-gi~-~~~~~ag  364 (447)
T PLN02607        297 -KVV--------TTARRMSSFTLVSSQTQ-HLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRA-GIE-CLKGNAG  364 (447)
T ss_pred             -HHH--------HHHHHHhhcCCCCHHHH-HHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCC-cccCCee
Confidence             222        333332222 2222333 67777776642  4788999999999999999999986 555 4789999


Q ss_pred             EEEEEecCCCcccccccccccC--C-CCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeec-CHHHHHHHHHHHHH
Q 047983          151 MFVMYCGSEDKCLLKLNYSLLE--G-INSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAV-EPSAFEIGLGRMKA  224 (233)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~-~~~~l~~~~~~l~~  224 (233)
                      +|+|         ++++  ...  . ...+.++..++++++||.|.||+.|+.  .+|+|++++. +++.++++++||.+
T Consensus       365 ~fvw---------~~L~--~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~~~~~~l~~gl~Ri~~  433 (447)
T PLN02607        365 LFCW---------MNLS--PLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTLEVALKRIHR  433 (447)
T ss_pred             EEEE---------EEch--HhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEeccCCHHHHHHHHHHHHH
Confidence            9999         5543  211  0 111335556777788999999999975  6899999996 89999999999999


Q ss_pred             HHHHHhh
Q 047983          225 FYYRHAK  231 (233)
Q Consensus       225 ~l~~~~~  231 (233)
                      ++++++.
T Consensus       434 ~l~~~~~  440 (447)
T PLN02607        434 FMDRRKT  440 (447)
T ss_pred             HHHHHHh
Confidence            9988864

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.96  E-value=1.1e-28  Score=221.58  Aligned_cols=207  Identities=22%  Similarity=0.325  Sum_probs=149.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCC-Cccccccc----cCCc----cCEEEEccCccc-cCCCCceEEEEEe---cCC
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGN-THFVPMGV----FGSI----VPVLTLGSISKR-WIVPGWRLGWLVT---SDP   67 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~-~~~~~~~~----~~~~----~~~i~~~s~sK~-~~~~G~R~G~~~~---~~~   67 (233)
                      ++|+++|++||++||+||+|.++.|++ ..+.++..    +...    .++|+++||||. +++||||+||+++   ++ 
T Consensus       241 ~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~-  319 (481)
T PTZ00377        241 EEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPP-  319 (481)
T ss_pred             HHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCH-
Confidence            478999999999999999999999854 33444432    2221    379999999997 6999999999997   44 


Q ss_pred             CccccccchhhhhhhhhHHhhhhhhhhccCcchHHHHHHHHhhh-----c----HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 047983           68 NGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEK-----T----EEEFFSKITDILREAADICCDRLKEI  138 (233)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~----~~~~~~~~~~~~~~~~~~l~~~L~~~  138 (233)
                       +++++  +         .+... ...+.+...| .++..+++.     .    ..+++++.++.+++|++.+.+.|+++
T Consensus       320 -~li~~--l---------~~~~~-~~~~~~~~~Q-~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~  385 (481)
T PTZ00377        320 -EVREQ--I---------YKLAS-INLCSNVVGQ-LMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKI  385 (481)
T ss_pred             -HHHHH--H---------HHHhh-eecCCChHHH-HHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             44432  1         22222 1234444444 444555532     1    22345555567899999999999988


Q ss_pred             CCcccccCCCccEEEEEecCCCccccccccccc-------CCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEEe
Q 047983          139 PCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLL-------EGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRITF  208 (233)
Q Consensus       139 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~~  208 (233)
                      +++.+ ..|+||+|+|         ++++.+..       .++.++..++.++|+++||.++||+.|+.   .+|+|+|+
T Consensus       386 ~g~~~-~~p~gg~fl~---------~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~  455 (481)
T PTZ00377        386 EGVSC-QPVEGAMYAF---------PRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITI  455 (481)
T ss_pred             CCcEe-ecCCeeEEEE---------eeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEE
Confidence            77775 7899999999         65543210       01223566788999999999999999984   46999999


Q ss_pred             ecCHHHHHHHHHHHHHHHHHHhhc
Q 047983          209 AVEPSAFEIGLGRMKAFYYRHAKK  232 (233)
Q Consensus       209 ~~~~~~l~~~~~~l~~~l~~~~~~  232 (233)
                      +.++++++++++||.++++++.++
T Consensus       456 ~~~~e~l~~~l~rl~~~~~~~~~~  479 (481)
T PTZ00377        456 LPPEEQIEEMVKKIKEFHESFMKK  479 (481)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHh
Confidence            988889999999999999987654

>PRK09082 methionine aminotransferase; Validated

Probab=99.96  E-value=2.5e-29  Score=220.10  Aligned_cols=195  Identities=18%  Similarity=0.315  Sum_probs=150.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++|+||+|.++.+++....++..... .+++|+++||||.|++||+|+||+++++  ++++.   +  
T Consensus       186 ~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~--~l~~~---~--  258 (386)
T PRK09082        186 RALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPA--ALSAE---F--  258 (386)
T ss_pred             HHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCCH--HHHHH---H--
Confidence            36899999999999999999999997655555555443 5789999999999999999999999987  45432   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                            .+...+..++.+...| .+++.++.. .++++++.++.+++|++.+.+.|++. ++.. .+|+||+|+|     
T Consensus       259 ------~~~~~~~~~~~~~~~q-~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~-~~~~g~~~~~-----  323 (386)
T PRK09082        259 ------RKVHQYNTFTVNTPAQ-LALADYLRA-EPEHYLELPAFYQAKRDRFRAALANS-RFKL-LPCEGTYFQL-----  323 (386)
T ss_pred             ------HHHHhhhcCCCChHHH-HHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhC-CCcc-cCCCeeEEEE-----
Confidence                  2333333344444444 556666642 46788999999999999999999885 5553 6889999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----CCcEEEEeecCHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFAVEPSAFEIGLGRMKA  224 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~Rl~~~~~~~~l~~~~~~l~~  224 (233)
                          ++++  +..+. ++.+++.++++++||.+.||+.|+.    .+|+|+|++.+++.+++++++|++
T Consensus       324 ----~~~~--~~~~~-~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~~~~~l~~~~~rl~~  385 (386)
T PRK09082        324 ----VDYS--AISDL-DDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAKQEETLDAAAERLCQ  385 (386)
T ss_pred             ----Eecc--ccCCC-CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence                5553  21122 4677888888899999999999953    479999999999999999999975

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.96  E-value=8.5e-29  Score=217.63  Aligned_cols=193  Identities=20%  Similarity=0.330  Sum_probs=149.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||++||+||+|.++.+++..+.++..++. .+++|+++||||.|++||+|+||+++++  ++++.   +  
T Consensus       189 ~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~~--~l~~~---~--  261 (399)
T PRK07681        189 KEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGNE--EIVRA---L--  261 (399)
T ss_pred             HHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEecCH--HHHHH---H--
Confidence            36899999999999999999999987655555555543 4689999999999999999999999876  44431   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                            ........++.+...| .++..++... .+++++.++.++++++.+.+.|++. ++.. ..|+||+|+|     
T Consensus       262 ------~~~~~~~~~~~s~~~q-~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~p~~g~f~~-----  326 (399)
T PRK07681        262 ------TQFKSNTDYGVFLPIQ-KAACAALRNG-AAFCEKNRGIYQERRDTLVDGFRTF-GWNV-DKPAGSMFVW-----  326 (399)
T ss_pred             ------HHHHhhcccCCCHHHH-HHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHC-CCcc-cCCCeeeEEE-----
Confidence                  2222222334444444 4455555433 4788999999999999999999887 5553 6789999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKA  224 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~  224 (233)
                          ++++.    +. ++.+++.++++++||.|.||+.|+.  ++|+|++++.+.+++++++++|.+
T Consensus       327 ----~~l~~----~~-~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~l~~l~~  384 (399)
T PRK07681        327 ----AEIPK----GW-TSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQQAVENIRN  384 (399)
T ss_pred             ----EECCC----CC-CHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence                66542    12 4678888888879999999999985  579999999888999999999987

>PRK07682 hypothetical protein; Validated

Probab=99.96  E-value=4.6e-29  Score=217.73  Aligned_cols=198  Identities=21%  Similarity=0.430  Sum_probs=150.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++|+++||+||+|.++.+++. +.++..+.. .+++++++||||.|++||+|+||+++++  ++++.  +   
T Consensus       177 ~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~--~~i~~--l---  248 (378)
T PRK07682        177 EEIAVIVEKHDLIVLSDEIYAELTYDEA-YTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPV--YFSEA--M---  248 (378)
T ss_pred             HHHHHHHHHcCcEEEEehhhhhcccCCC-CCChhhcccccCCEEEEecCcccccChhhhhhhhhcCH--HHHHH--H---
Confidence            3689999999999999999999998763 334444432 4789999999999999999999999987  44432  1   


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                            .....+..++.+...| .+...+++. ...++++.++.++++++.+.+.|+++ ++. +..|+||+|+|     
T Consensus       249 ------~~~~~~~~~~~~~~~q-~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~-~~~p~g~~~~~-----  313 (378)
T PRK07682        249 ------LKIHQYSMMCAPTMAQ-FAALEALRA-GNDDVIRMRDSYRKRRNFFVTSFNEI-GLT-CHVPGGAFYAF-----  313 (378)
T ss_pred             ------HHHHHhhccCCCHHHH-HHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHC-CCc-cCCCCeeEEEE-----
Confidence                  2222222233333333 555555543 34578899999999999999999987 555 37899999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                          +.++..   +. ++.+++.++++++||.+.||+.|+.  .+|+|||++.+.+++++++++|.++++++
T Consensus       314 ----~~~~~~---~~-~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~  377 (378)
T PRK07682        314 ----PSISST---GL-SSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYATSLEQLQEAMKRMKRFVENK  377 (378)
T ss_pred             ----EeccCC---CC-CHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence                554311   11 4667777878788999999999975  68999999998899999999999998765

>PRK12414 putative aminotransferase; Provisional

Probab=99.96  E-value=1.2e-28  Score=215.76  Aligned_cols=194  Identities=19%  Similarity=0.397  Sum_probs=146.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||++||+||+|.++.|++....++..... .+++|+++||||.|++||+|+||+++++  .+++.   +  
T Consensus       185 ~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~--~l~~~---l--  257 (384)
T PRK12414        185 ARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPA--ELMDE---I--  257 (384)
T ss_pred             HHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCH--HHHHH---H--
Confidence            36889999999999999999999987654445554432 4689999999999999999999999987  44431   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                            .........+.+...| .++..++....  +..+.++.++++++.+.+.|++. ++.+ .+|+||+|+|     
T Consensus       258 ------~~~~~~~~~~~s~~~q-~a~~~~l~~~~--~~~~~~~~~~~~r~~l~~~L~~~-g~~~-~~~~gg~~~~-----  321 (384)
T PRK12414        258 ------RKVHQFMVFSADTPMQ-HAFAEALAEPA--SYLGLGAFYQRKRDLLARELAGS-RFEL-LPSEGSFFML-----  321 (384)
T ss_pred             ------HHHHhheecCCCcHHH-HHHHHHhcCCh--HHHHHHHHHHHHHHHHHHHHHhC-CCee-cCCCcceEEE-----
Confidence                  2333333444445555 55556664432  33467889999999999999987 4553 6899999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----CCcEEEEeecCHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFAVEPSAFEIGLGRMKA  224 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~Rl~~~~~~~~l~~~~~~l~~  224 (233)
                          ++++  ..... ++.+++.++++++||.+.||+.|+.    .+|+|++++.++++++++++||.+
T Consensus       322 ----~~~~--~~~~~-~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~~~rl~~  383 (384)
T PRK12414        322 ----ARFR--HFSDE-SDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSKDDATLVEGARRLCS  383 (384)
T ss_pred             ----Eccc--ccCCC-CHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence                5443  21111 3678888889999999999999963    479999999999999999999974

>PLN02231 alanine transaminase

Probab=99.96  E-value=2e-28  Score=221.58  Aligned_cols=208  Identities=20%  Similarity=0.297  Sum_probs=151.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCC-CccccccccC-------CccCEEEEccCcccc-CCCCceEEEEEecC-CCcc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGN-THFVPMGVFG-------SIVPVLTLGSISKRW-IVPGWRLGWLVTSD-PNGI   70 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~-~~~~~~~~~~-------~~~~~i~~~s~sK~~-~~~G~R~G~~~~~~-~~~~   70 (233)
                      ++|+++|++||++||+||+|.++.|++ ..+.++..+.       ...++|+++|+||.| +.||+|+||+++++ ++++
T Consensus       294 ~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l  373 (534)
T PLN02231        294 RDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDV  373 (534)
T ss_pred             HHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHH
Confidence            378999999999999999999999963 4555655442       123699999999965 89999999998742 1134


Q ss_pred             ccccchhhhhhhhhHHhhhhhhhhccCcchHHHHHHHHhhh------cHH---HHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           71 LQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEK------TEE---EFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                      ++.  +         ..+.. ...+++...| .+...+++.      ..+   ++.+.+++.|++|++.+.+.|++++++
T Consensus       374 ~~~--l---------~k~~~-~~~~s~~~~Q-~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi  440 (534)
T PLN02231        374 REQ--I---------YKVAS-VNLCSNISGQ-ILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGV  440 (534)
T ss_pred             HHH--H---------HHHHh-hhcCCChHHH-HHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            431  1         22222 2333333344 444444432      122   345567899999999999999998777


Q ss_pred             ccccCCCccEEEEEecCCCccccccccccc-------CCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEEeecC
Q 047983          142 TCPKKPEGSMFVMYCGSEDKCLLKLNYSLL-------EGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRITFAVE  211 (233)
Q Consensus       142 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~~~~~  211 (233)
                      .+ .+|+||||+|         +++.++..       .+..++..++.++++++||.++||+.|+.   ..++|+++..+
T Consensus       441 ~~-~~p~Ggfylw---------~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~~~  510 (534)
T PLN02231        441 TC-NKAEGAMYLF---------PRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTILPQ  510 (534)
T ss_pred             ee-cCCCeeeEEe---------ccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEeCCC
Confidence            75 7899999999         66544321       01223556778899999999999999985   35799999989


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 047983          212 PSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       212 ~~~l~~~~~~l~~~l~~~~~  231 (233)
                      +++++++++||.+++++..+
T Consensus       511 ~e~l~eal~RL~~~~~~~~~  530 (534)
T PLN02231        511 EDKIPAIVSRLTEFHKSFMD  530 (534)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887754

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.96  E-value=2.4e-28  Score=219.58  Aligned_cols=203  Identities=20%  Similarity=0.340  Sum_probs=151.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC--------ccCEEEEccCccccCCCCceEEEEEecCCCcccc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS--------IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQ   72 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~--------~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~   72 (233)
                      ++|+++|++||++||+||+|.++.|++..+.++..+..        .++++++.||||.|++||+|+||++++++ .+. 
T Consensus       222 ~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~-~l~-  299 (496)
T PLN02376        222 TNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFND-SVV-  299 (496)
T ss_pred             HHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCH-HHH-
Confidence            36899999999999999999999998766666554421        14678899999999999999999999762 222 


Q ss_pred             ccchhhhhhhhhHHhhhhhhhh-ccCcchHHHHHHHHhhhcH--HHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCc
Q 047983           73 DLGVAFFHSISLNMRMDDYLLL-SESVYTTVGAVPQILEKTE--EEFFSKITDILREAADICCDRLKEIPCITCPKKPEG  149 (233)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  149 (233)
                                   ..++..... ..+..+| .+++.++++..  ++++.++++.++++++.+.+.|++. ++.+ .+|+|
T Consensus       300 -------------~~~~~~~~~~~vs~~~Q-~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~-gi~~-~~~~a  363 (496)
T PLN02376        300 -------------SCARKMSSFGLVSSQTQ-LMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA-DIAC-LTSNA  363 (496)
T ss_pred             -------------HHHHHHhhcCCCCHHHH-HHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCcc-cCCCc
Confidence                         222222222 2223333 66777776542  4788889999999999999999886 5554 67999


Q ss_pred             cEEEEEecCCCccccccccccc--CCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeec-CHHHHHHHHHHHHH
Q 047983          150 SMFVMYCGSEDKCLLKLNYSLL--EGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAV-EPSAFEIGLGRMKA  224 (233)
Q Consensus       150 g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~-~~~~l~~~~~~l~~  224 (233)
                      |+|+|         ++++....  ....++.++...+++++||.|.||+.|+.  .+|+|||++. +++.++++++||.+
T Consensus       364 G~flw---------i~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~~~~~~l~~al~rl~~  434 (496)
T PLN02376        364 GLFAW---------MDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQD  434 (496)
T ss_pred             eEEEE---------EEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeCCCHHHHHHHHHHHHH
Confidence            99999         54432100  01112356777778788999999999974  6899999996 88999999999999


Q ss_pred             HHHHHh
Q 047983          225 FYYRHA  230 (233)
Q Consensus       225 ~l~~~~  230 (233)
                      ++.+.+
T Consensus       435 ~l~~~~  440 (496)
T PLN02376        435 FVSKNK  440 (496)
T ss_pred             HHHHhh
Confidence            997654

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.96  E-value=1.1e-28  Score=217.57  Aligned_cols=206  Identities=15%  Similarity=0.113  Sum_probs=147.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||++||+||+|.+|.+++..+.++..++. .+++|+++||||.|++||+|+||+++++  ++++.+...+.
T Consensus       199 ~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~~--~li~~~~~~~~  276 (409)
T PRK07590        199 KAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVPK--ELKGKTSDGEG  276 (409)
T ss_pred             HHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEEEEcCH--HHhhhccccch
Confidence            36899999999999999999999887654455655544 3579999999999999999999999987  44431000000


Q ss_pred             hhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           80 HSISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                      .............. .+.+...| .+++.++......++++.++.++++++.+.+.|++. ++. +..|+||+|+|    
T Consensus       277 ~~~~~~~~~~~~~~~~~~s~~~q-~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~-~~~~~g~~f~w----  349 (409)
T PRK07590        277 VSLNSLWNRRQSTKFNGVSYIVQ-RAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESA-GFE-VYGGVNAPYIW----  349 (409)
T ss_pred             hhhHHHHHHHHhhcccCcCHHHH-HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-eecCCcceEEE----
Confidence            00000000111111 12333333 455555544456799999999999999999999987 454 36788999999    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAF  225 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~  225 (233)
                           ++++.    +. ++.++..++++++||.+.||+.|+.  .+|+|||+..+++++++++++|.++
T Consensus       350 -----i~~~~----~~-~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl~~~  408 (409)
T PRK07590        350 -----VKTPD----GM-SSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFGSRENVLEAMERIKKA  408 (409)
T ss_pred             -----EECCC----CC-CHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccCCHHHHHHHHHHHHhh
Confidence                 65542    12 3567777888889999999999975  4799999877899999999999865

>PRK08912 hypothetical protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=214.99  Aligned_cols=199  Identities=20%  Similarity=0.366  Sum_probs=149.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||++||+||+|.++.+++..+.++..+.. .+++|+++|+||.|++||+|+||+++++  ++++.   +   
T Consensus       183 ~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~--~~~~~---l---  254 (387)
T PRK08912        183 LLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAP--PLLRV---L---  254 (387)
T ss_pred             HHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecCH--HHHHH---H---
Confidence            6899999999999999999999987644445544433 4789999999999999999999999987  44421   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                           ........++.++..+ .++...+. ..++++++.++.++++++.+.+.|+.. ++.. .+|+||+|+|      
T Consensus       255 -----~~~~~~~~~~~~~~~q-~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~g~~~l~------  319 (387)
T PRK08912        255 -----AKAHQFLTFTTPPNLQ-AAVAYGLG-KPDDYFEGMRADLARSRDRLAAGLRRI-GFPV-LPSQGTYFLT------  319 (387)
T ss_pred             -----HHHHhhccccCChHHH-HHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcc-cCCCcceEEE------
Confidence                 2222222233333333 33333332 346788899999999999999999987 5554 6789999999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----CCcEEEEeecCHHHHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~Rl~~~~~~~~l~~~~~~l~~~l~~  228 (233)
                         ++++.  .....++.+++.++++++||.|.||+.|+.    .+|+|++++.+++.+++++++|.+++.+
T Consensus       320 ---~~l~~--~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~~~~~l~~~l~rl~~~l~~  386 (387)
T PRK08912        320 ---VDLAP--LGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKRDATLDEAVERLAAARRR  386 (387)
T ss_pred             ---ecccc--cCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence               55532  111124677888888889999999999953    5899999999899999999999998764

>PRK09265 aminotransferase AlaT; Validated

Probab=99.96  E-value=3.5e-28  Score=214.04  Aligned_cols=208  Identities=24%  Similarity=0.417  Sum_probs=150.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|+++|++||+||+|.++.+++....++..+....++|+++||||.|++||+|+||++++.+..+.+  .++   
T Consensus       191 ~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~--~~~---  265 (404)
T PRK09265        191 EEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAK--GYI---  265 (404)
T ss_pred             HHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEEeCchHHHH--HHH---
Confidence            368899999999999999999999877555566656555679999999999999999999999754322221  122   


Q ss_pred             hhhhHHhhhhh--hhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDY--LLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                           ..+...  ...+.+...| .++..++... ...+..+.++.+.++++.+.+.|++++++.. ..|+||+|+|   
T Consensus       266 -----~~~~~~~~~~~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~-~~p~~g~~l~---  335 (404)
T PRK09265        266 -----EGLDMLASMRLCANVPAQ-HAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIPGVSC-VKPKGALYAF---  335 (404)
T ss_pred             -----HHHHHHhccccCCCcHHH-HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-cCCCcceEEE---
Confidence                 222221  1233333444 4444444322 1122223345678889999999988767653 7899999999   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                            ++++.... +..++.+++.++++++||.|.||+.|+.  .+|+|++++.+.+.+++++++|.++++.++
T Consensus       336 ------~~~~~~~~-~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~~~e~l~~~l~rl~~~l~~~~  403 (404)
T PRK09265        336 ------PKLDPKVY-PIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLPRVDDLEEAIGRIGRFLSGYR  403 (404)
T ss_pred             ------EEeccccc-CCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhc
Confidence                  66653211 1224677888999999999999999964  689999998899999999999999998764

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.96  E-value=3.2e-28  Score=217.72  Aligned_cols=203  Identities=19%  Similarity=0.303  Sum_probs=151.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcccccccc---------CCccCEEEEccCccccCCCCceEEEEEecCCCccc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVF---------GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL   71 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~---------~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~   71 (233)
                      ++|+++|++||++||+||+|.++.|++..+.++...         +..+++++++||||.|++||+|+||+++++  ..+
T Consensus       214 ~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~--~~l  291 (468)
T PLN02450        214 NLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSND--EMV  291 (468)
T ss_pred             HHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECC--HHH
Confidence            368999999999999999999998876544443222         235789999999999999999999999986  221


Q ss_pred             cccchhhhhhhhhHHhhhhhhhh-ccCcchHHHHHHHHhhhcH--HHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC
Q 047983           72 QDLGVAFFHSISLNMRMDDYLLL-SESVYTTVGAVPQILEKTE--EEFFSKITDILREAADICCDRLKEIPCITCPKKPE  148 (233)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  148 (233)
                           .        ..+...... +.+...| .+++.++++..  ..++++.++.++++++.+.+.|+++ ++. +.+|+
T Consensus       292 -----~--------~~~~~~~~~~~~s~~~Q-~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~-gi~-~~~~~  355 (468)
T PLN02450        292 -----V--------SAATKMSSFGLVSSQTQ-YLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA-GIK-CLKSN  355 (468)
T ss_pred             -----H--------HHHHHHhhcCCCCHHHH-HHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCc-ccCCC
Confidence                 1        222222111 2233333 66677776542  2578999999999999999999988 565 37899


Q ss_pred             ccEEEEEecCCCccccccccccc-CCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeec-CHHHHHHHHHHHHH
Q 047983          149 GSMFVMYCGSEDKCLLKLNYSLL-EGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAV-EPSAFEIGLGRMKA  224 (233)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~-~~~~l~~~~~~l~~  224 (233)
                      ||+|+|         ++++.... ....+..++..++++++||.|.||+.|+.  .+|+|++++. +++++++++++|++
T Consensus       356 ~g~flw---------i~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~~~~~~l~~~l~ri~~  426 (468)
T PLN02450        356 AGLFCW---------VDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDLAMKRLKS  426 (468)
T ss_pred             ceEEEE---------EEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecCCCHHHHHHHHHHHHH
Confidence            999999         55431110 01112356777888889999999999975  6899999996 89999999999999


Q ss_pred             HHHHHh
Q 047983          225 FYYRHA  230 (233)
Q Consensus       225 ~l~~~~  230 (233)
                      ++.+..
T Consensus       427 ~l~~~~  432 (468)
T PLN02450        427 FVESDS  432 (468)
T ss_pred             HHHhcc
Confidence            987654

>PRK08960 hypothetical protein; Provisional

Probab=99.96  E-value=2.4e-28  Score=213.98  Aligned_cols=195  Identities=18%  Similarity=0.325  Sum_probs=148.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++||++||+||+|.++.+++. ..++.  ...+++|+++||||.||+||+|+||+++++  ++++.   +    
T Consensus       189 ~l~~~~~~~~~~li~De~Y~~~~~~~~-~~~~~--~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~--~~~~~---~----  256 (387)
T PRK08960        189 ALSQALRARGGHLVVDEIYHGLTYGVD-AASVL--EVDDDAFVLNSFSKYFGMTGWRLGWLVAPP--AAVPE---L----  256 (387)
T ss_pred             HHHHHHHHcCCEEEEEccccccccCCC-CCChh--hccCCEEEEeecccccCCcccEEEEEEcCH--HHHHH---H----
Confidence            688899999999999999999988653 33333  234689999999999999999999999987  44421   1    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCCc
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDK  161 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (233)
                          ..+......+.+...| .+...++.+...+++++.++.++++++.+.+.|+++ ++..+..|+||+|+|       
T Consensus       257 ----~~~~~~~~~~~s~~~q-~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~p~g~~f~~-------  323 (387)
T PRK08960        257 ----EKLAQNLYISASTPAQ-HAALACFEPETLAILEARRAEFARRRDFLLPALREL-GFGIAVEPQGAFYLY-------  323 (387)
T ss_pred             ----HHHHhhhccCCCHHHH-HHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCCcCCCeeEEEE-------
Confidence                2333333344444444 444444544456899999999999999999999887 443335689999999       


Q ss_pred             ccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 047983          162 CLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                        ++++..   .. ++.+++.++++++||.|.||+.|+.   .+|+|+|++.+.+.+++++++|.+++.
T Consensus       324 --~~~~~~---~~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~~~~~l~~al~~l~~~~~  386 (387)
T PRK08960        324 --ADISAF---GG-DAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVERIARGLR  386 (387)
T ss_pred             --Eecccc---CC-CHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence              655421   11 4667777888889999999999975   479999999989999999999988764

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.96  E-value=4.3e-28  Score=212.82  Aligned_cols=199  Identities=22%  Similarity=0.401  Sum_probs=153.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|++||+||+|.+|.+++..+.++..+.. .+++|+++|+||.|++||+|+||+++++. +++        
T Consensus       185 ~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~-~~~--------  255 (397)
T PRK07568        185 EMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNK-ELI--------  255 (397)
T ss_pred             HHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCH-HHH--------
Confidence            36899999999999999999999987755555555543 57899999999999999999999998642 233        


Q ss_pred             hhhhhHHhhhhhh--hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           80 HSISLNMRMDDYL--LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        80 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                            ..+....  .++.+...| .+++.+++. .+.++++.++.++++++.+.+.|++++++. +..|+||+|+|   
T Consensus       256 ------~~~~~~~~~~~~~s~~~q-~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~p~g~~~~~---  323 (397)
T PRK07568        256 ------AAAMKLCQARLSPPTLEQ-IGAAALLDT-PESYFDEVREEYKKRRDILYEELNKIPGVV-CEKPKGAFYII---  323 (397)
T ss_pred             ------HHHHHHhhccCCCCcHHH-HHHHHHhhC-CHHHHHHHHHHHHHHHHHHHHHHhcCCCce-ecCCCcceEEE---
Confidence                  2222111  233333343 555666543 467899999999999999999998876665 37899999999   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhc-----cCEEEECCcccCC-----CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKE-----ESIIVLPGITVGL-----KDWLRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~gi~v~pg~~f~~-----~~~~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                            ++++..      ++.++..+++++     +||.+.||+.|+.     .+|+|++++.+.+++++++++|.++++
T Consensus       324 ------~~l~~~------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~~~~~~~~~~~~l~~~l~  391 (397)
T PRK07568        324 ------AKLPVD------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVLNEEDLKRAMEILKEALE  391 (397)
T ss_pred             ------EecCCC------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence                  666421      366777777654     6999999999942     469999999888999999999999999


Q ss_pred             HHhhc
Q 047983          228 RHAKK  232 (233)
Q Consensus       228 ~~~~~  232 (233)
                      ++...
T Consensus       392 ~~~~~  396 (397)
T PRK07568        392 KYNKR  396 (397)
T ss_pred             Hhhcc
Confidence            87643

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.96  E-value=2.5e-28  Score=214.17  Aligned_cols=201  Identities=18%  Similarity=0.408  Sum_probs=151.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||+++|+||+|.++.+++..+.++..... +++|+++|+||.|++||+|+||+++++  +++++   +   
T Consensus       189 ~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~g~~GlRvG~~v~~~--~~~~~---~---  259 (391)
T PRK07309        189 KALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLP-DQTILINGLSKSHAMTGWRIGLIFAPA--EFTAQ---L---  259 (391)
T ss_pred             HHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhcc-CCEEEEecChhhccCccceeEEEEeCH--HHHHH---H---
Confidence            36899999999999999999999987654445544443 789999999999999999999999987  44432   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                           .....+...+++...| .++..++.+. ..+....++.++++++.+.+.|++. ++.. ..|+||+|+|      
T Consensus       260 -----~~~~~~~~~~~~~~~q-~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~-~~p~gg~~~~------  324 (391)
T PRK07309        260 -----IKSHQYLVTAATTMAQ-FAAVEALTNG-KDDALPMKKEYIKRRDYIIEKMTDL-GFKI-IKPDGAFYIF------  324 (391)
T ss_pred             -----HHHHhhcccCCChHHH-HHHHHHHhCC-hhHHHHHHHHHHHHHHHHHHHHHHC-CCee-cCCCeeEEEE------
Confidence                 2222222223333333 5555556443 3344678889999999999999887 4553 6899999999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHHhh
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                         ++++...  . .++.+++.++++++||.|.||+.|+.  .+|+|++++.+.+++++++++|.++++++++
T Consensus       325 ---~~l~~~~--~-~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~i~~l~~~~~~~~~  391 (391)
T PRK07309        325 ---AKIPAGY--N-QDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASMETIKEAMKRLKEYMEEHAG  391 (391)
T ss_pred             ---EECCCCC--C-CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHhhcC
Confidence               6654211  1 13567777888889999999999976  6899999998889999999999999988764

>PRK08175 aminotransferase; Validated

Probab=99.96  E-value=2.6e-28  Score=214.27  Aligned_cols=200  Identities=21%  Similarity=0.332  Sum_probs=151.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||++||+||+|.++.+++....++..+.. .+++|+++||||.||+||+|+||+++++  ++++.   +  
T Consensus       187 ~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~--~l~~~---~--  259 (395)
T PRK08175        187 EKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNP--ELVSA---L--  259 (395)
T ss_pred             HHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCCH--HHHHH---H--
Confidence            37899999999999999999999987655555554432 4678999999999999999999999877  44431   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                            .+...+...+.+.+.+..+. ..+. ..+++++.+++.++++++++.+.|+.+ ++. +..|+||+|+|     
T Consensus       260 ------~~~~~~~~~~~~~~~q~~~~-~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~-~~~p~~g~~i~-----  324 (395)
T PRK08175        260 ------ARIKSYHDYGTFTPLQVAAI-AALE-GDQQCVRDIAEQYKRRRDVLVKGLHEA-GWM-VEMPKASMYVW-----  324 (395)
T ss_pred             ------HHHHhhcccCCCcHHHHHHH-HHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHc-CCc-ccCCCEEEEEE-----
Confidence                  23333333343344442333 4343 346789999999999999999999987 555 36789999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~  228 (233)
                          ++++...  ...++.+++.++++++||.|.||+.|+.  ++++|++++.+.+.+++++++|.+++.+
T Consensus       325 ----i~l~~~~--~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~~~~~~~~~al~~l~~~l~~  389 (395)
T PRK08175        325 ----AKIPEPY--AAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRA  389 (395)
T ss_pred             ----EECCccc--CCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence                6554211  0013567777788889999999999975  5799999988899999999999999875

>PRK08068 transaminase; Reviewed

Probab=99.96  E-value=2.8e-28  Score=213.60  Aligned_cols=193  Identities=20%  Similarity=0.317  Sum_probs=144.9

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccc-cCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGV-FGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~-~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||++||+||+|.++.+++..+.++.. .+..+++|+++||||.|++||+|+||+++++  ++++.   +   
T Consensus       191 ~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~--~l~~~---l---  262 (389)
T PRK08068        191 ETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNE--SVIEA---I---  262 (389)
T ss_pred             HHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEecCH--HHHHH---H---
Confidence            6889999999999999999999887644444433 2345689999999999999999999999877  44431   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                           .+.......+..+..+.++...+.  ...++++..++.++++++.+.+.|+++ ++.. .+|+||+|+|      
T Consensus       263 -----~~~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~-~~~~g~~~~~------  327 (389)
T PRK08068        263 -----NLLQDHLFVSLFGAIQDAAIEALL--SDQSCVAELVARYESRRNAFISACREI-GWEV-DAPKGSFFAW------  327 (389)
T ss_pred             -----HHHHhhccCCCChHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHHHHC-CCcc-cCCCeeEEEE------
Confidence                 222322222322223324444442  234789999999999999999999887 5653 6889999999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAF  225 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~  225 (233)
                         ++++.    +. ++.++..++++++||.|.||+.|+.  .+|+|++++.+++.+++++++|.++
T Consensus       328 ---v~~~~----~~-~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~  386 (389)
T PRK08068        328 ---MPVPK----GY-TSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLTDEERLREAVERIGKL  386 (389)
T ss_pred             ---EECCC----CC-CHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcCCHHHHHHHHHHHHHh
Confidence               55542    11 4667777777778999999999986  5799999998888999999998763

>PRK07683 aminotransferase A; Validated

Probab=99.96  E-value=5.8e-28  Score=211.54  Aligned_cols=199  Identities=23%  Similarity=0.449  Sum_probs=151.4

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcccccccc-CCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|+++|++||+||+|.++.++++ ..++... +..+++|+++||||.|++||+|+||+++++  .+++.  +    
T Consensus       185 ~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~--~l~~~--~----  255 (387)
T PRK07683        185 DIADVLKDKNIFVLSDEIYSELVYEQP-HTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPS--YLAKH--I----  255 (387)
T ss_pred             HHHHHHHHcCeEEEEecccccceeCCC-cCChhhccCCcCCeEEEeeccccccCccceeEEEEcCH--HHHHH--H----
Confidence            688999999999999999999988653 3355544 345789999999999999999999999987  44431  1    


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                           .....+...+.+...| .++..++.. ...+.+..++.++++++.+.+.|++. ++. +.+|+||+|+|      
T Consensus       256 -----~~~~~~~~~~~~~~~q-~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~~~~~~~~------  320 (387)
T PRK07683        256 -----LKVHQYNVTCASSISQ-YAALEALTA-GKDDAKMMRHQYKKRRDYVYNRLISM-GLD-VEKPTGAFYLF------  320 (387)
T ss_pred             -----HHHHHhccCCCChHHH-HHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHc-CCc-ccCCCeeEEEE------
Confidence                 1222222222222333 455555543 34678889999999999999999887 455 36899999999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHHhh
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                         +.++..   +. ++.+++.++++++||.+.||+.|+.  ++|+||+++.+++++++++++|.+++++.++
T Consensus       321 ---~~~~~~---~~-~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~~~~~~~~al~~l~~~l~~~~~  386 (387)
T PRK07683        321 ---PSIGHF---TM-SSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAYSIETLKEGLDRLEAFLQQKAK  386 (387)
T ss_pred             ---EecccC---CC-CHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhhcc
Confidence               544321   11 3667888889999999999999975  5899999999999999999999999987654

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.96  E-value=4.9e-28  Score=211.61  Aligned_cols=193  Identities=22%  Similarity=0.371  Sum_probs=148.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||++||+||+|.++.+++..+.++..++. .+++|+++||||.||+||+|+||+++++  ++++.   +  
T Consensus       187 ~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~~--~l~~~---~--  259 (383)
T TIGR03540       187 KELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNA--DLIAG---L--  259 (383)
T ss_pred             HHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCCH--HHHHH---H--
Confidence            47899999999999999999999987655556655543 4678999999999999999999999887  44421   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                            ..+......+.+...+ .+...+++. ..+++++.++.++++++.+.+.|++. ++.+ .+|+||+|+|     
T Consensus       260 ------~~~~~~~~~~~~~~~q-~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~-~~~~~~~~~~-----  324 (383)
T TIGR03540       260 ------GKVKTNVDSGVFQAIQ-YAAIAALNG-PQDVVKEIRKIYQRRRDLLLEALKKI-GIDV-EKPKATFYVW-----  324 (383)
T ss_pred             ------HHHHHhcccCCChHHH-HHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHhC-CCEe-cCCCcceEEE-----
Confidence                  2222222222222333 444555543 36889999999999999999999987 5654 6888999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKA  224 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~  224 (233)
                          ++++.    +. ++.+++.++++++||.|.||+.|+.  .+|+|++++.+++.+++++++|.+
T Consensus       325 ----~~l~~----~~-~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~  382 (383)
T TIGR03540       325 ----VPVPE----GY-TSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKK  382 (383)
T ss_pred             ----EECCC----CC-CHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecCCHHHHHHHHHHHhh
Confidence                66542    12 4677888888889999999999975  479999999888999999999864

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.96  E-value=2.9e-28  Score=214.00  Aligned_cols=192  Identities=20%  Similarity=0.322  Sum_probs=144.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCC-cccc-ccc---cC--CccCEEEEccCccccCCCCceEEEEEecCCCccccc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNT-HFVP-MGV---FG--SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD   73 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~-~~~~-~~~---~~--~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~   73 (233)
                      ++|+++|++||++||+||+|.++.|++. .+.+ +..   .+  ..+++|+++||||.|++||+|+||+++++  .++++
T Consensus       189 ~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~--~l~~~  266 (396)
T PRK09147        189 KKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDA--ALLKK  266 (396)
T ss_pred             HHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecCCH--HHHHH
Confidence            4789999999999999999999988763 2211 111   11  34799999999999999999999999987  44432


Q ss_pred             cchhhhhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEE
Q 047983           74 LGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFV  153 (233)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~  153 (233)
                         +        .+...+...+.+...+.++++.+   ..++++++.++.++++++.+.+.|++.  +. +..|+||+|+
T Consensus       267 ---~--------~~~~~~~~~~~~~~~q~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~-~~~p~~g~f~  329 (396)
T PRK09147        267 ---F--------LLYRTYHGCAMPPAVQAASIAAW---NDEAHVRENRALYREKFDAVTPILAPV--LD-VQLPDAGFYL  329 (396)
T ss_pred             ---H--------HHHhhhcccCCCHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHHHHHHHh--cC-CCCCCeeEEE
Confidence               1        22222222333333443444444   235689999999999999999999874  23 3579999999


Q ss_pred             EEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--------CCcEEEEeecCHHHHHHHHHHHHHH
Q 047983          154 MYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--------KDWLRITFAVEPSAFEIGLGRMKAF  225 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--------~~~~Rl~~~~~~~~l~~~~~~l~~~  225 (233)
                      |         ++++.       ++.+++.++++++||.+.||+.|+.        .+|+||+++.+++++++++++|.++
T Consensus       330 ~---------~~~~~-------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~~~~~l~~~l~rl~~~  393 (396)
T PRK09147        330 W---------AKVPG-------DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVAPLAECVEAAERIVDF  393 (396)
T ss_pred             E---------EECCC-------CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence            9         66541       3677888888889999999999862        4799999999889999999999987


Q ss_pred             HH
Q 047983          226 YY  227 (233)
Q Consensus       226 l~  227 (233)
                      +.
T Consensus       394 ~~  395 (396)
T PRK09147        394 CR  395 (396)
T ss_pred             hc
Confidence            73

>PRK08363 alanine aminotransferase; Validated

Probab=99.96  E-value=5.9e-28  Score=212.18  Aligned_cols=205  Identities=25%  Similarity=0.435  Sum_probs=153.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|+++|++||+||+|.++.+++. +.++..++...++|+++||||.|++||+|+||+++.+++.+++  .+.   
T Consensus       189 ~~l~~~a~~~~~~li~Deay~~~~~~~~-~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~--~l~---  262 (398)
T PRK08363        189 KEILDIAGEHDLPVISDEIYDLMTYEGK-HVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLA--EVR---  262 (398)
T ss_pred             HHHHHHHHHcCeEEEEhhhhhhhccCCc-ccCHHHcCcCCcEEEEecchhccCCccceEEEEEEeCcHHHHH--HHH---
Confidence            3689999999999999999999988653 3345555556789999999999999999999999822113432  122   


Q ss_pred             hhhhHHhhhhhh--hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           81 SISLNMRMDDYL--LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        81 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                           ..+....  .++.+...+ .+...++. ..++++++.++.++++++.+.+.|++++++.. ..|+||+|+|    
T Consensus       263 -----~~~~~~~~~~~~~s~~~q-~~~~~~l~-~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~-~~p~g~~~~~----  330 (398)
T PRK08363        263 -----EAIDKLARIRLCPNTPAQ-FAAIAGLT-GPMDYLEEYMKKLKERRDYIYKRLNEIPGIST-TKPQGAFYIF----  330 (398)
T ss_pred             -----HHHHHHhcccccCChHHH-HHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHhcCCCCEe-cCCCeEEEEE----
Confidence                 2222111  133333333 44444443 34678999999999999999999988866653 6899999999    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHHhh
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                           ++++...   ..++.+++.++|+++||.|.||+.|+.  .+|+|+|++.+++++++++++|.+++++..+
T Consensus       331 -----~~l~~~~---~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~~~~~~~  397 (398)
T PRK08363        331 -----PRIEEGP---WKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMDRFEEFMRERLG  397 (398)
T ss_pred             -----EEeccCC---CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhcc
Confidence                 6654310   113677888888999999999999975  5799999988889999999999999887543

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.96  E-value=2.3e-29  Score=212.99  Aligned_cols=198  Identities=24%  Similarity=0.428  Sum_probs=151.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccc-cCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGV-FGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~-~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++|+||+|..+++++..+..+.. .++++++|.++|+||+|+++|||+||+++++  .++..   .  
T Consensus       195 e~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~--~L~~~---~--  267 (420)
T KOG0257|consen  195 ERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPK--HLYSA---L--  267 (420)
T ss_pred             HHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechH--Hhhhh---H--
Confidence            57999999999999999999999999975555544 4678999999999999999999999999966  44431   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhc-------HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEE
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKT-------EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMF  152 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~  152 (233)
                            ..+.+...+..+++.|. |.+..+...       ...+...+.+.|+++|+.|.+.|+++ ++.. ..|+|+||
T Consensus       268 ------~~vh~~~~~~~~Tp~q~-A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l-g~~v-~~p~gayy  338 (420)
T KOG0257|consen  268 ------FPVHQNFVFTCPTPIQE-ASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL-GLKV-TGPEGAYY  338 (420)
T ss_pred             ------HHHhhccccccCcHHHH-HHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc-CCcc-ccCCCceE
Confidence                  23333333333444443 222222111       12567779999999999999999999 7774 89999999


Q ss_pred             EEEecCCCcccccccccc-------cCCCCChHHHHHHHHhccCEEEECCcccCC-------CCcEEEEeecCHHHHHHH
Q 047983          153 VMYCGSEDKCLLKLNYSL-------LEGINSDTEFALKLAKEESIIVLPGITVGL-------KDWLRITFAVEPSAFEIG  218 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------~~~~Rl~~~~~~~~l~~~  218 (233)
                      +|         +.++...       .....++..++.+++++.|+.++|++.|+.       .+++|+++....+.++.+
T Consensus       339 l~---------adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k~~~~L~~a  409 (420)
T KOG0257|consen  339 LW---------ADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFCKADETLRKA  409 (420)
T ss_pred             EE---------EeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHHhhHHHHHHH
Confidence            99         4443111       112236888999999999999999999996       468899999999999999


Q ss_pred             HHHHH
Q 047983          219 LGRMK  223 (233)
Q Consensus       219 ~~~l~  223 (233)
                      .++|+
T Consensus       410 ~e~l~  414 (420)
T KOG0257|consen  410 IERLK  414 (420)
T ss_pred             HHHHh
Confidence            99987

>PRK07777 aminotransferase; Validated

Probab=99.96  E-value=7e-28  Score=210.95  Aligned_cols=197  Identities=23%  Similarity=0.411  Sum_probs=149.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccC-CccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++|++++|+||+|.++.+++..+.++..+. ..+++|+++||||.|++||+|+||+++++  .+++.   +  
T Consensus       182 ~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~--~l~~~---~--  254 (387)
T PRK07777        182 AAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPA--PLIAA---V--  254 (387)
T ss_pred             HHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEecCH--HHHHH---H--
Confidence            3689999999999999999999998765445555443 25789999999999999999999999987  34421   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                            .....+...+.+.+.+ .+++.++.. .+.++++.++.++++++.+.+.|+++ ++.. .+|+|++|+|     
T Consensus       255 ------~~~~~~~~~~~~~~~q-~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~-~~~~g~~~~~-----  319 (387)
T PRK07777        255 ------RAAKQYLTYVGGAPFQ-PAVAHALDH-EDAWVAALRDSLQAKRDRLAAGLAEA-GFEV-HDSAGTYFLC-----  319 (387)
T ss_pred             ------HHHHhhcccCCCCHHH-HHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHhC-CCCc-cCCCcceEEE-----
Confidence                  2222222333333444 444455433 35788999999999999999999887 5553 6889999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-----CCcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-----KDWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----~~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                          ++++  .. +..++.+++.++++++||.|.||+.|+.     .+++||+++.+++++++++++|.++.
T Consensus       320 ----~~~~--~~-~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~~~~~l~~~l~~l~~~~  384 (387)
T PRK07777        320 ----ADPR--PL-GYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCKRDDTLDEAIRRLRALR  384 (387)
T ss_pred             ----eccc--cc-CCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence                5543  11 1124678888888889999999999963     46899999999999999999998765

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.96  E-value=4.5e-28  Score=212.01  Aligned_cols=193  Identities=20%  Similarity=0.322  Sum_probs=147.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||++||+||+|.++.+++..+.++..++. .+++|+++||||.|++||+|+||+++++  ++++.   +  
T Consensus       189 ~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~--~l~~~---~--  261 (385)
T PRK09276        189 EEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGNA--DLIAG---L--  261 (385)
T ss_pred             HHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCCH--HHHHH---H--
Confidence            36899999999999999999999987655556655543 4678999999999999999999999887  44432   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                            .+.+.....+.+...+ .+...++. ..+.++++.++.++++++.+.+.|+++ ++.. ..|+||+|+|     
T Consensus       262 ------~~~~~~~~~~~~~~~q-~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~-~~~~~~~~~~-----  326 (385)
T PRK09276        262 ------GKVKSNVDSGVFQAIQ-EAGIAALN-GPQEVVEELRKIYQERRDILVEGLRKL-GLEV-EPPKATFYVW-----  326 (385)
T ss_pred             ------HHHHhhccCCCCHHHH-HHHHHHHc-CcHHHHHHHHHHHHHHHHHHHHHHHhC-CCcc-cCCCcceEEE-----
Confidence                  2222222222222223 44444443 346789999999999999999999987 5553 6789999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKA  224 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~  224 (233)
                          ++++..    . ++.+++.++++++||.+.||+.|+.  .+|+|++++.+++++.+++++|.+
T Consensus       327 ----v~~~~~----~-~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~  384 (385)
T PRK09276        327 ----APVPKG----Y-TSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTVPDERIEEAVERIKK  384 (385)
T ss_pred             ----EECCCC----C-CHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCCCHHHHHHHHHHHhh
Confidence                665421    2 4677788888889999999999975  579999999888899999999864

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.96  E-value=2.8e-28  Score=213.75  Aligned_cols=199  Identities=22%  Similarity=0.484  Sum_probs=150.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++++++||+||+|.++.+++....++...+. +++++++|+||.|++||+|+||+++++  +++++  +    
T Consensus       189 ~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~i~~~s~SK~~~~~GlRiG~~~~~~--~~~~~--~----  259 (391)
T PRK08361        189 KAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAP-DNTILANSFSKTFAMTGWRLGFVIAPE--QVIKD--M----  259 (391)
T ss_pred             HHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCC-CCEEEEecCchhcCCcHhhhhhhccCH--HHHHH--H----
Confidence            36889999999999999999999887644445544433 689999999999999999999999987  34421  1    


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           .........+.+...+ .++..++++. ..+++++.++.++++++.+.+.|++++++.. ..|+||+|+|     
T Consensus       260 -----~~~~~~~~~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~-~~p~g~~~~~-----  327 (391)
T PRK08361        260 -----IKLHAYIIGNVASFVQ-IAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKV-FEPKGAFYVF-----  327 (391)
T ss_pred             -----HHHHhhhccCCChHHH-HHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCee-cCCCEEEEEE-----
Confidence                 1222222223322223 4444555443 3468999999999999999999998867664 7899999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~  228 (233)
                          ++++..   +. ++.+++.++++++||.|.||+.|+.  .+|+|++++.+++++++++++|.+++++
T Consensus       328 ----~~l~~~---~~-~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~l~~  390 (391)
T PRK08361        328 ----ANIDET---GM-SSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYATSKEKLIEAMERMEKALEE  390 (391)
T ss_pred             ----EECCCC---CC-CHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence                666421   12 4667777777789999999999975  5899999999888999999999998864

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.96  E-value=8.1e-28  Score=209.93  Aligned_cols=197  Identities=25%  Similarity=0.489  Sum_probs=148.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccC-CCcccccccc-CCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFG-NTHFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~-~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++|+++|++||+||+|.++.++ +....++..+ +..+++++++||||.|+++|+|+||+++++  ++++.   + 
T Consensus       181 ~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~--~~~~~---~-  254 (382)
T PRK06108        181 RAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPP--ALGQV---L-  254 (382)
T ss_pred             HHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCH--HHHHH---H-
Confidence            36899999999999999999999987 3333333333 335789999999999999999999999987  44431   1 


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                             .....+...+.+...+ .+...++.. ..+++++.++.++++++.+.+.|++++++.. ..|+||+|+|    
T Consensus       255 -------~~~~~~~~~~~~~~~q-~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~p~~g~~~~----  320 (382)
T PRK06108        255 -------EKLIEYNTSCVAQFVQ-RAAVAALDE-GEDFVAELVARLRRSRDHLVDALRALPGVEV-AKPDGAMYAF----  320 (382)
T ss_pred             -------HHHHHhcccCCChHHH-HHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-cCCCeeEEEE----
Confidence                   2222222222222333 444444433 3568889999999999999999988767764 6889999999    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                           ++++..     .++.+++.++++++||.+.||+.|+.  .+|+|+|++.+++++++++++|.++++
T Consensus       321 -----~~l~~~-----~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~  381 (382)
T PRK06108        321 -----FRIPGV-----TDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFARDPARLDEAVERLRRFLA  381 (382)
T ss_pred             -----EeCCCC-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence                 655421     14667888888889999999999975  589999999999999999999998875

>PRK07337 aminotransferase; Validated

Probab=99.96  E-value=1.1e-27  Score=209.74  Aligned_cols=199  Identities=21%  Similarity=0.402  Sum_probs=146.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|+++++++|+||+|.++.+++. +.++.  ...+++|+++|+||.|++||+|+||+++++  .+++.   +   
T Consensus       186 ~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~--~~~~~vi~~~S~SK~~~~~G~RiG~~~~~~--~l~~~---l---  254 (388)
T PRK07337        186 RRIVEAVRARGGFTIVDEIYQGLSYDAA-PVSAL--SLGDDVITINSFSKYFNMTGWRLGWLVVPE--ALVGT---F---  254 (388)
T ss_pred             HHHHHHHHHCCCEEEEeccccccccCCC-CcChh--hccCCEEEEEechhhcCCchhheeeeecCH--HHHHH---H---
Confidence            3688999999999999999999988654 22332  234679999999999999999999999987  34421   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                           .........+.+...| .++..++.....++.++.++.++++++.+.+.|+++ ++..+..|+||+|+|      
T Consensus       255 -----~~~~~~~~~~~s~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~-~~~~~~~p~~g~f~~------  321 (388)
T PRK07337        255 -----EKLAQNLFICASALAQ-HAALACFEPDTLAIYERRRAEFKRRRDFIVPALESL-GFKVPVMPDGAFYVY------  321 (388)
T ss_pred             -----HHHHHHhccCCChHHH-HHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCCeeEEEE------
Confidence                 2222222333344444 444444543434556888999999999999999886 443224789999999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                         ++++....++..++.+++.++++++||.|.||+.|+.   .+|+|+|++.+++.+++++++|.+++
T Consensus       322 ---~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~~~~~l~~~l~rl~~~l  387 (388)
T PRK07337        322 ---ADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVARLGKLF  387 (388)
T ss_pred             ---EecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecCCHHHHHHHHHHHHHHh
Confidence               5553210011124677888889999999999999975   58999999998999999999998765

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.96  E-value=2.3e-27  Score=207.97  Aligned_cols=204  Identities=25%  Similarity=0.470  Sum_probs=153.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcccccccc--CCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVF--GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++|++||+++|+||+|.++.+++..+.++.++  +..+++++++||||.|++||+|+||+++++  +++++   + 
T Consensus       187 ~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~~--~~~~~---~-  260 (393)
T PRK05764        187 EAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGPK--ELIKA---M-  260 (393)
T ss_pred             HHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEecCH--HHHHH---H-
Confidence            368999999999999999999999876544455544  335689999999999999999999999876  34421   1 


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                             .+.......+.++..+ .+...+++ ...+++++.++.++++++.+.+.|++++++.. ..|+||+|+|    
T Consensus       261 -------~~~~~~~~~~~~~~~q-~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~g~~~~~----  326 (393)
T PRK05764        261 -------SKLQSHSTSNPTSIAQ-YAAVAALN-GPQDEVEEMRQAFEERRDLMVDGLNEIPGLEC-PKPEGAFYVF----  326 (393)
T ss_pred             -------HHHHhhcccCCChHHH-HHHHHHHc-CChHHHHHHHHHHHHHHHHHHHHHhhCCCCcc-cCCCcceEEE----
Confidence                   2222212223333333 44455554 24578889999999999999999998867664 6799999999    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                           ++++........++.++...+++++||.+.||+.|+..+|+|++++.+++++++++++|.++++++
T Consensus       327 -----~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~~~~~~~~~~~i~~l~~~~~~~  392 (393)
T PRK05764        327 -----PNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYATSLEDLEEGLERIERFLESL  392 (393)
T ss_pred             -----EecccccccccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence                 554421100001246777788888999999999998889999999999999999999999998765

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.96  E-value=6.7e-28  Score=216.25  Aligned_cols=211  Identities=18%  Similarity=0.255  Sum_probs=150.2

Q ss_pred             ChHHHHHHH--cCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchh-
Q 047983            1 FCIEETTKK--LGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVA-   77 (233)
Q Consensus         1 ~~i~~l~~~--~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~-   77 (233)
                      ++|+++|++  +|++||+||+|.+|.+   .+.++.... .+++|++.||||.|++||||+||+++++. .++++  ++ 
T Consensus       264 ~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~s~~~~~-~~~~I~v~SfSK~f~mtG~RlG~i~~~~~-~v~~~--~i~  336 (527)
T PRK09275        264 EKIADIVNEKRPDLMIITDDVYGTFVD---DFRSLFAVL-PYNTILVYSFSKYFGATGWRLGVIALHED-NVFDK--LIA  336 (527)
T ss_pred             HHHHHHHHhcCCCcEEEECCCChhhcc---cccCHHHhC-CCCEEEEeehhhhccCcHhHHhhhhcCch-hHHHH--HHH
Confidence            368899965  5999999999999874   233443332 37899999999999999999999999873 22221  11 


Q ss_pred             ------------hhhhh--------------hhHHhhhhhhhhccCcchHHH-H---HHHHhhhcHHHHHHHHHHHHHHH
Q 047983           78 ------------FFHSI--------------SLNMRMDDYLLLSESVYTTVG-A---VPQILEKTEEEFFSKITDILREA  127 (233)
Q Consensus        78 ------------~~~~~--------------~~~~~~~~~~~~~~~~~~~~~-~---~~~~l~~~~~~~~~~~~~~~~~~  127 (233)
                                  +++++              .....+..+.+.+.+.+.|.+ +   +.+++ +..+++.+++++.+++|
T Consensus       337 ~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all-~~~~~~~~~~~~~~~~R  415 (527)
T PRK09275        337 KLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALL-DEEDAYKKAMKDIIRRR  415 (527)
T ss_pred             hccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHH
Confidence                        00000              001233344445555566642 3   33434 34467899999999999


Q ss_pred             HHHHHHHhhcCCCcccccCCCccEEEEEecCCCcccccccccc---c--------CCCCChHHHHHHHHhccCEEEECCc
Q 047983          128 ADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSL---L--------EGINSDTEFALKLAKEESIIVLPGI  196 (233)
Q Consensus       128 ~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~~~~~ll~~~gi~v~pg~  196 (233)
                      ++.+.+.|. + .+. ..+|+|+||+|         +.++.-.   .        ....++.+++.++++++||++.||+
T Consensus       416 r~~l~~~Lg-~-~~~-~~~p~g~fY~~---------~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v~PG~  483 (527)
T PRK09275        416 YKALYEGLG-L-PEP-EDPNNAAYYTL---------IDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVLLPGG  483 (527)
T ss_pred             HHHHHHHcC-C-CCc-CCCCCeeEEEE---------EEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEEeCch
Confidence            999999883 2 222 14799999999         4432100   0        0112578999999999999999999


Q ss_pred             ccCC-CCcEEEEeec-CHHHHHHHHHHHHHHHHHHhh
Q 047983          197 TVGL-KDWLRITFAV-EPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       197 ~f~~-~~~~Rl~~~~-~~~~l~~~~~~l~~~l~~~~~  231 (233)
                      .|+. ++++|+|++. +++++.++++||.+++.++..
T Consensus       484 ~Fg~~~~~vRis~a~~~~~~~~~~~~rl~~~l~~y~~  520 (527)
T PRK09275        484 GFGGPEWSVRVSLANLNEEDYAKIGKAIRKLLDEYYE  520 (527)
T ss_pred             hhCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence            9986 6789999996 889999999999999998864

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.96  E-value=1.1e-27  Score=210.29  Aligned_cols=194  Identities=20%  Similarity=0.328  Sum_probs=148.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||++||+||+|.++.+++..+.++..+.. .+++|+++||||.|++||+|+||+++++  ++++.   +   
T Consensus       194 ~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~--~l~~~---l---  265 (394)
T PRK05942        194 EIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNR--HIIQG---L---  265 (394)
T ss_pred             HHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecCH--HHHHH---H---
Confidence            6889999999999999999999987655555555543 4568999999999999999999999987  44421   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                           .........+.+..+| .++..+++ ..++++++.++.++++++.+.+.|++. ++.. ..|+||+|+|      
T Consensus       266 -----~~~~~~~~~~~~~~~q-~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~-~~~~~~~f~~------  330 (394)
T PRK05942        266 -----RTLKTNLDYGIFSALQ-KAAETALQ-LPDSYLQQVQERYRTRRDFLIQGLGEL-GWNI-PPTKATMYLW------  330 (394)
T ss_pred             -----HHHHhhcccCCCHHHH-HHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHC-CCee-cCCCeeeEEE------
Confidence                 2222222233333333 45555553 346788999999999999999999887 5553 6789999999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                         ++++..    . ++.+++.++++++||.|.||+.|+.  .+|+|+|++.+.+.+.+++++|.++-
T Consensus       331 ---~~~~~~----~-~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~~  390 (394)
T PRK05942        331 ---VPCPVG----M-GSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIADCDRLGEALDRLKQAG  390 (394)
T ss_pred             ---EECCCC----C-CHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHHhh
Confidence               665421    2 4677788889899999999999974  58999999988899999999998754

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.96  E-value=1.7e-27  Score=209.50  Aligned_cols=198  Identities=16%  Similarity=0.105  Sum_probs=145.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCcccccc--chh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDL--GVA   77 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~--~~~   77 (233)
                      ++|+++|++||++||+||+|.+|.+++..+.++..++. .+++|+++||||.|++||+|+||+++++  .++...  ...
T Consensus       196 ~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i~~~--~l~~~~~~~~~  273 (402)
T TIGR03542       196 KELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGWTVVPK--ELTYADGHSVI  273 (402)
T ss_pred             HHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEEEEecH--HHhhcchhhHH
Confidence            47899999999999999999999876544445554443 4689999999999999999999999987  333100  000


Q ss_pred             hhhhhhhHHhh---hhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEE
Q 047983           78 FFHSISLNMRM---DDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVM  154 (233)
Q Consensus        78 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~  154 (233)
                              ...   ......+++...| .+...++.+....+..+.++.++++++.+.+.|++. ++.. ..|.||+|+|
T Consensus       274 --------~~~~~~~~~~~~~~s~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~-~~~~~~~f~~  342 (402)
T TIGR03542       274 --------QDWERRQCTKFNGASYPVQ-RAAEAAYAGEGLQPILEAISYYMENARILRKALEAA-GFKV-YGGEHAPYLW  342 (402)
T ss_pred             --------HHHHHHhhhcccCCCHHHH-HHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhc-Ccee-cCCCceeEEE
Confidence                    111   1111112333333 444555544444567778899999999999999886 4543 5778999999


Q ss_pred             EecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHH
Q 047983          155 YCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAF  225 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~  225 (233)
                               ++++..    + ++.++..++++++||.+.||+.|+.  .+|+||+++.+++++++++++|.+.
T Consensus       343 ---------v~l~~~----~-~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~  401 (402)
T TIGR03542       343 ---------VKTPEG----I-SSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFGKRENIVEACERIKEA  401 (402)
T ss_pred             ---------EECCCC----C-CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHhh
Confidence                     666421    2 4667888888888999999999975  5899999877899999999999865

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK05839 hypothetical protein; Provisional

Probab=99.95  E-value=2.5e-27  Score=206.68  Aligned_cols=186  Identities=25%  Similarity=0.343  Sum_probs=137.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcccccccc------CCccCEEEEccCccccCCCCceEEEEEecCCCcccccc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVF------GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDL   74 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~------~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~   74 (233)
                      ++|+++|++||++||+||+|.++.+++ ...++...      ...+++|+++||||.|++||+|+||+++++  +++++ 
T Consensus       178 ~~i~~~~~~~~~~ii~DE~Y~~~~~~~-~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~--~~~~~-  253 (374)
T PRK05839        178 IEWVKLALKHDFILINDECYSEIYENT-PPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDA--SILKK-  253 (374)
T ss_pred             HHHHHHHHHcCCEEEeccchhhcccCC-CCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecCH--HHHHH-
Confidence            478999999999999999999986543 23333221      234799999999999999999999999976  34421 


Q ss_pred             chhhhhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEE
Q 047983           75 GVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVM  154 (233)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~  154 (233)
                        +        .........+.+...|..+.+.+ .  .++++++.++.++++++.+.+.|    +.   ..|+||+|+|
T Consensus       254 --~--------~~~~~~~~~~~~~~~q~~~~~~l-~--~~~~~~~~~~~~~~~~~~~~~~l----~~---~~p~gg~fi~  313 (374)
T PRK05839        254 --Y--------KAYRTYLGCASPLPLQKAAAVAW-L--DDEHAEFFRNIYAKNLKLAREIL----GI---TIPPATFYVW  313 (374)
T ss_pred             --H--------HHHHhhcCCCCChHHHHHHHHHh-c--cchHHHHHHHHHHHHHHHHHHhc----CC---CCCCeeEEEE
Confidence              1        22222222333333443333333 2  35688889999999999888766    22   2688999999


Q ss_pred             EecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 047983          155 YCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                               ++++        ++.+++.++++++||.|.||+.|+.    .+|+|+|++.+++++++++++|.++++
T Consensus       314 ---------~~~~--------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~l~~l~~~l~  373 (374)
T PRK05839        314 ---------LPVD--------NDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIKTYLE  373 (374)
T ss_pred             ---------EeCC--------ChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhh
Confidence                     5553        2677888877779999999998874    489999999889999999999998874

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.95  E-value=2.5e-27  Score=207.91  Aligned_cols=190  Identities=22%  Similarity=0.348  Sum_probs=141.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCC-ccccc-cc---c--CCccCEEEEccCccccCCCCceEEEEEecCCCccccc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNT-HFVPM-GV---F--GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD   73 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~-~~~~~-~~---~--~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~   73 (233)
                      ++|+++|++||++||+||+|.++.+++. .+.++ ..   .  +..+++|+++||||.|++||+|+||+++++  +++++
T Consensus       188 ~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~--~l~~~  265 (393)
T TIGR03538       188 KKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDA--EILKA  265 (393)
T ss_pred             HHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecCH--HHHHH
Confidence            4789999999999999999999988642 22222 11   2  235789999999999999999999999987  44432


Q ss_pred             cchhhhhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEE
Q 047983           74 LGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFV  153 (233)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~  153 (233)
                         +        .++......+.+...+..+++.+   ..++++++.++.++++++.+.+.|++.  +. +..|+||+|+
T Consensus       266 ---~--------~~~~~~~~~~~~~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~-~~~p~gg~f~  328 (393)
T TIGR03538       266 ---F--------LRYRTYHGCAMPIPTQLASIAAW---NDEQHVRENRALYREKFAAVLEILGQV--LD-LELPDAGFYL  328 (393)
T ss_pred             ---H--------HHHHHhhccCcCHHHHHHHHHHh---cChHHHHHHHHHHHHHHHHHHHHHHhh--Cc-ccCCCeeEEE
Confidence               1        22232222333333443434443   235789999999999999999999874  22 3579999999


Q ss_pred             EEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--------CCcEEEEeecCHHHHHHHHHHHHHH
Q 047983          154 MYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--------KDWLRITFAVEPSAFEIGLGRMKAF  225 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--------~~~~Rl~~~~~~~~l~~~~~~l~~~  225 (233)
                      |         ++++  .     ++.+++.++++++||.|.||+.|+.        .+|+||+++.+++++++++++|.++
T Consensus       329 ~---------~~~~--~-----~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~~~~~l~~~l~~l~~~  392 (393)
T TIGR03538       329 W---------PKVP--G-----DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVAPLEECVEAAERIRSF  392 (393)
T ss_pred             E---------EECC--C-----CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecCCHHHHHHHHHHHHHh
Confidence            9         6654  1     3677777878889999999999851        4799999998899999999999875

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.95  E-value=3.5e-27  Score=200.02  Aligned_cols=206  Identities=19%  Similarity=0.280  Sum_probs=159.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCC--------Ccc-----------ccccccCCccCEEEEccCccccCCCCceEEE
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGN--------THF-----------VPMGVFGSIVPVLTLGSISKRWIVPGWRLGW   61 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~--------~~~-----------~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~   61 (233)
                      ++|.++|++||++||+||.|.-+.++.        .+.           .++..++.+.|||.++||||. .+||+|+||
T Consensus       227 k~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKi-iaPGlRlG~  305 (472)
T KOG0634|consen  227 KKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKI-IAPGLRLGW  305 (472)
T ss_pred             HHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhh-hcCcceeEE
Confidence            378999999999999999999999872        111           133445678899999999999 889999999


Q ss_pred             EEecCCCccccccchhhhhhhhhHHhhhhhhh---hccCcchHH---HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHh
Q 047983           62 LVTSDPNGILQDLGVAFFHSISLNMRMDDYLL---LSESVYTTV---GAVPQILEKTEEEFFSKITDILREAADICCDRL  135 (233)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  135 (233)
                      +++++  .++              .++.....   .+.+..+|.   +.+..+.+.+..+|+.+++..|..|++.+..+|
T Consensus       306 it~~~--~~l--------------~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al  369 (472)
T KOG0634|consen  306 ITGNS--LFL--------------KRILDLAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSAL  369 (472)
T ss_pred             eecCH--HHH--------------HHHhhhcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998  344              33333333   233344442   334444333455899999999999999999999


Q ss_pred             hc-CCCc-ccccCCCccEEEEEecCCCccccccccccc---CCCCChHHHHHHHHhccCEEEECCcccCC------CC-c
Q 047983          136 KE-IPCI-TCPKKPEGSMFVMYCGSEDKCLLKLNYSLL---EGINSDTEFALKLAKEESIIVLPGITVGL------KD-W  203 (233)
Q Consensus       136 ~~-~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~-~  203 (233)
                      .+ +|.. ..+.+|.||||+|         +++|....   ..+.+-++.....+.++||.+++|+.|..      +. |
T Consensus       370 ~kylp~~~~~~~~P~aGmFiw---------v~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kif  440 (472)
T KOG0634|consen  370 DKYLPKSVCEYHPPKAGMFIW---------VEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIF  440 (472)
T ss_pred             HHhCCCCeeEEecCCcceEEE---------EEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcce
Confidence            88 7655 5578999999999         88874332   13323567888899999999999999963      23 9


Q ss_pred             EEEEeec-CHHHHHHHHHHHHHHHHHHhhc
Q 047983          204 LRITFAV-EPSAFEIGLGRMKAFYYRHAKK  232 (233)
Q Consensus       204 ~Rl~~~~-~~~~l~~~~~~l~~~l~~~~~~  232 (233)
                      +|++++. +.++++++++|+..+++++...
T Consensus       441 fRls~a~a~~e~l~~g~~rf~~~ike~f~~  470 (472)
T KOG0634|consen  441 FRLSIAFAEPEKLDEGIERFGSVIKEHFIT  470 (472)
T ss_pred             EEEEeecCCHHHHHHHHHHHHHHHHHHhhc
Confidence            9999997 8999999999999999998654

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.95  E-value=2.9e-27  Score=211.92  Aligned_cols=209  Identities=18%  Similarity=0.226  Sum_probs=150.5

Q ss_pred             ChHHHHHHHc--CcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchh-
Q 047983            1 FCIEETTKKL--GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVA-   77 (233)
Q Consensus         1 ~~i~~l~~~~--~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~-   77 (233)
                      ++|+++|++|  |++||+||+|.+|.+   .+.++.+.. .+++|++.||||.|++||||+||+++++. .++++  ++ 
T Consensus       263 ~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~sl~~~~-~~~vI~v~SfSK~fg~~G~RlG~i~~~~~-~v~d~--li~  335 (521)
T TIGR03801       263 EKIVDIVANDRPDLMILTDDVYGTFVD---DFRSLFAEL-PYNTIGVYSFSKYFGATGWRLGTIALHKD-NIFDK--LIA  335 (521)
T ss_pred             HHHHHHHHhcCCCeEEEECCCchhhcc---cccchhhhC-CCCEEEEEcchhhccCchhhhhhhhcCch-HHHHH--HHH
Confidence            3688999987  999999999999875   233444332 36899999999999999999999999873 23221  11 


Q ss_pred             ------------hhhhh--------------hhHHhhhhhhhhccCcchHH-H---HHHHHhhhcHHHHHHHHHHHHHHH
Q 047983           78 ------------FFHSI--------------SLNMRMDDYLLLSESVYTTV-G---AVPQILEKTEEEFFSKITDILREA  127 (233)
Q Consensus        78 ------------~~~~~--------------~~~~~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~~~~~~~  127 (233)
                                  +++++              .....+..+.+.+.+.+.|. .   ++.+++ +..+.+.+++++.+++|
T Consensus       336 ~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all-~~~~~y~~~~~~~~~~R  414 (521)
T TIGR03801       336 ELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALM-DKENAYKAETKDICRRR  414 (521)
T ss_pred             hccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHH
Confidence                        00000              00022333334455566664 2   344444 34467999999999999


Q ss_pred             HHHHHHHhhcCCCcccccCCCccEEEEEecCCCcccccccccccC-------------CCCChHHHHHHHHhccCEEEEC
Q 047983          128 ADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLE-------------GINSDTEFALKLAKEESIIVLP  194 (233)
Q Consensus       128 ~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~ll~~~gi~v~p  194 (233)
                      ++.+.+.| .+ ... ..+|+|+||+|         +.++  ...             ...++.+++.++++++||++.|
T Consensus       415 ~~~l~~~L-g~-~~~-~~~~~g~~Y~~---------~di~--~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV~v~P  480 (521)
T TIGR03801       415 EKLLFRGL-GL-PLQ-EDPNDVAYYTL---------IDLE--EWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGIVLLP  480 (521)
T ss_pred             HHHHHHhc-CC-CCc-CCCCCeEEEEE---------eehH--HHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCEEEeC
Confidence            99999998 22 222 25789999999         4443  210             0114789999999999999999


Q ss_pred             CcccCC-CCcEEEEeec-CHHHHHHHHHHHHHHHHHHhh
Q 047983          195 GITVGL-KDWLRITFAV-EPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       195 g~~f~~-~~~~Rl~~~~-~~~~l~~~~~~l~~~l~~~~~  231 (233)
                      |+.|+. ++++|+|++. ++++++++.+||++++.+|..
T Consensus       481 G~~Fg~~~~~vRisla~l~~~~~~~~~~rl~~~~~~~~~  519 (521)
T TIGR03801       481 GGGFGGPEWSVRVSLANLNEYDYAEIGRAIRKILDEYYE  519 (521)
T ss_pred             chhcCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999986 5689999995 899999999999999998865

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.95  E-value=5.2e-27  Score=208.26  Aligned_cols=189  Identities=14%  Similarity=0.113  Sum_probs=141.1

Q ss_pred             hHHHHHHHc-CcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKL-GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~-~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++| +++||+||+|.+|.+++. +..+. . ..+++|+++||||.|+ ||+|+||+++++  .+++.   +   
T Consensus       236 ~l~~la~~~~~~~ii~De~Y~~~~~~~~-~~~~~-~-~~~~vi~~~SfSK~~~-~GlRiG~~i~~~--~~~~~---~---  303 (431)
T PRK15481        236 ALRNLLARYPQVLVIIDDHFALLSSSPY-HSVIP-Q-TTQRWALIRSVSKALG-PDLRLAFVASDS--ATSAR---L---  303 (431)
T ss_pred             HHHHHHHhcCCceEEecCchhhhccCCC-CCCCc-C-CCCCEEEEeeeccccC-CCceeEEEeCCH--HHHHH---H---
Confidence            789999999 999999999999986542 22222 2 3468999999999999 999999999987  34421   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           .........+.+...| .+++.+++++ .++++++.++.++++++.+.+.|++. ++. +..|+||+|+|     
T Consensus       304 -----~~~~~~~~~~~s~~~q-~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~-~~~-~~~p~gg~f~~-----  370 (431)
T PRK15481        304 -----RLRLNSGTQWVSHLLQ-DLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY-GIA-IPSPGDGLNLW-----  370 (431)
T ss_pred             -----HHHHhccccCCCHHHH-HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc-CCc-cccCCCeEEEE-----
Confidence                 1111221222333333 6666666554 45789999999999999999999887 554 35799999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEEeec-CHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRITFAV-EPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~~~~-~~~~l~~~~~~l~~~l~  227 (233)
                          ++++.       ++.+++.. |.++||.|.||+.|+.   .+|+|+|++. +++++++++++|.+++.
T Consensus       371 ----~~l~~-------~~~~~~~~-l~~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~  430 (431)
T PRK15481        371 ----LPLDT-------DSQATALT-LAKSGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALN  430 (431)
T ss_pred             ----EECCC-------CHHHHHHH-HHHCCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence                55541       24555555 5578999999999964   3689999997 78999999999998764

>PRK07550 hypothetical protein; Provisional

Probab=99.95  E-value=1.9e-26  Score=201.84  Aligned_cols=195  Identities=22%  Similarity=0.278  Sum_probs=145.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcccccccc-CCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||++||+||+|.+|.+++..+.++... +..+++|++.||||.|++||+|+||+++++  .++++   +  
T Consensus       186 ~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~--~~~~~---~--  258 (386)
T PRK07550        186 HELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASP--ARIAE---I--  258 (386)
T ss_pred             HHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCH--HHHHH---H--
Confidence            478999999999999999999987654333333322 345789999999999999999999999987  34321   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                            .........+.+...+ .+++.+++ ..+++.++.++.++++++.+.+.|+.++++.  ..|.||+|+|     
T Consensus       259 ------~~~~~~~~~~~s~~~q-~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~--~~~~g~~~~~-----  323 (386)
T PRK07550        259 ------EKFMDTVAICAPRIGQ-IAVAWGLP-NLADWRAGNRAEIARRRDAFRAVFARLPGWE--LLASGAYFAY-----  323 (386)
T ss_pred             ------HHHHhhcccCCCcHHH-HHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHhCCCce--eCCCceEEEE-----
Confidence                  2222222233333333 55555554 3567889999999999999999998865553  3577999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeec-CHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAV-EPSAFEIGLGRMKAF  225 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~-~~~~l~~~~~~l~~~  225 (233)
                          ++++..   +. ++.+++.++++++||.|.||+.|+.  ++|+|++++. +++++++++++|.++
T Consensus       324 ----~~~~~~---~~-~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~  384 (386)
T PRK07550        324 ----VRHPFP---DR-PSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF  384 (386)
T ss_pred             ----ecCCCC---CC-CHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence                665431   11 4677788888889999999999975  5799999996 899999999999875

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.95  E-value=1.5e-26  Score=201.05  Aligned_cols=188  Identities=14%  Similarity=0.210  Sum_probs=138.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccc-c--CCccCEEEEccCccccCCCCceEEEEEecCCCccccccchh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGV-F--GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~-~--~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++|+++|++||++||+||+|.++.+++.....+.. .  ...+++|+++||||.|++||+|+||+++++  +++++   +
T Consensus       171 ~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~--~~~~~---~  245 (364)
T PRK07865        171 RKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDP--ALVAE---L  245 (364)
T ss_pred             HHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEecCH--HHHHH---H
Confidence            37899999999999999999999886632222211 0  134789999999999999999999999887  44431   1


Q ss_pred             hhhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           78 FFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                              .+.+....++.+...+ .++.+++..  .+++++.++.++++++.+.+.|++. ++.. ..|+||+|+|   
T Consensus       246 --------~~~~~~~~~~~~~~~q-~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~---  309 (364)
T PRK07865        246 --------LEVRKHAGMMVPAPVQ-AAMVAALGD--DAHVREQRERYARRRAVLRPALEAA-GFRV-DHSEAGLYLW---  309 (364)
T ss_pred             --------HHHHHhcCCCcCHHHH-HHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHc-CCcc-cCCCccEEEE---
Confidence                    2222222333333333 445555532  5678889999999999999999887 5553 6789999999   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMK  223 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~  223 (233)
                            ++++  .      +...+.+.|+++||.+.||..|+.  .+|+||+++.+++++++++++|.
T Consensus       310 ------~~~~--~------~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~~~~~~l~  363 (364)
T PRK07865        310 ------ATRG--E------DCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTATDERIAAAVERLA  363 (364)
T ss_pred             ------EeCC--C------CHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecCCHHHHHHHHHHhh
Confidence                  5442  1      233344566788999999998874  68999999988899999999985

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.94  E-value=1.4e-26  Score=200.76  Aligned_cols=187  Identities=29%  Similarity=0.528  Sum_probs=146.2

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcccc-ccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVP-MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||++||+||+|.++.++...+.+ ...++...++|+++|+||.||+||+|+||+++++        .++   
T Consensus       172 ~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~~--------~~~---  240 (363)
T PF00155_consen  172 ELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVAPP--------ELI---  240 (363)
T ss_dssp             HHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEEEH--------HHH---
T ss_pred             chhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeeccccccccccccccccchh--------hhh---
Confidence            5778899999999999999999988654433 4555666679999999999999999999999976        333   


Q ss_pred             hhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcH--HHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVYTTV-GAVPQILEKTE--EEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                           +.+......... ++.. .++.+++.+..  .++++++++.++++++.+.+.|++. ++.+ .++++|+|+|   
T Consensus       241 -----~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~~-~~~~~~~~~~---  309 (363)
T PF00155_consen  241 -----ERLRRFQRSGLS-SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-GITV-LPPEAGFFLW---  309 (363)
T ss_dssp             -----HHHHHHHHHTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSEE-EHHSBSSEEE---
T ss_pred             -----hhhhhccccccc-cchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-hhhe-eeccCccEEE---
Confidence                 444444332222 3333 55555554443  3499999999999999999999888 7765 6777999999   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee-cCHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA-VEPSAFEIGLGRM  222 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~-~~~~~l~~~~~~l  222 (233)
                            +.++..      ++.++..++++++||.+.||+.|+.++|+|++++ .+++++++++++|
T Consensus       310 ------~~~~~~------~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  310 ------VRLDPN------DAEELAQELLEEYGILVRPGSYFGVPGYIRISLASHSEEDLEEALERL  363 (363)
T ss_dssp             ------EEESHH------HHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEGGCSCHHHHHHHHHHH
T ss_pred             ------EEcccc------hHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEeccCCHHHHHHHHhhC
Confidence                  555422      3567888888777999999999999999999994 4999999999986

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.94  E-value=3.1e-26  Score=198.59  Aligned_cols=186  Identities=16%  Similarity=0.216  Sum_probs=136.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccc--c-CCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGV--F-GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~--~-~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      +|+++|++||++||+||+|.++.+++.....+..  . ...+++|+++||||.|++||+|+||+++++  +++++   + 
T Consensus       166 ~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~~--~~~~~---~-  239 (357)
T TIGR03539       166 AIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDP--ALVAE---L-  239 (357)
T ss_pred             HHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEecCH--HHHHH---H-
Confidence            6889999999999999999999887543222211  0 124689999999999999999999999876  44421   1 


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                             .+.+.....+.+...+ .++..+++  ...++++.++.++++++.+.+.|++. ++. +.+|+||+|+|    
T Consensus       240 -------~~~~~~~~~~~~~~~q-~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~L~~~-g~~-~~~p~~~~~~~----  303 (357)
T TIGR03539       240 -------LTVRKHAGLMVPAPVQ-AAMVAALG--DDGHVAEQKARYAARRAQLKPALEKA-GFR-IDHSEAGLYLW----  303 (357)
T ss_pred             -------HHHHhhcccCCCHHHH-HHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHc-CCC-CcCCCccEEEE----
Confidence                   2222222233333333 44455553  25677888999999999999999886 455 37899999999    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRM  222 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l  222 (233)
                           ++++.        +...+.+.|+++||.|.||..|+.  .+|+|+|++.+++++++++++|
T Consensus       304 -----~~~~~--------~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~~~~~i~~~~~~l  356 (357)
T TIGR03539       304 -----ATRGE--------DAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTATDERIAAAVARL  356 (357)
T ss_pred             -----EECCC--------CHHHHHHHHHhCCEEECCccccCCCCCCeEEEEecCCHHHHHHHHHhh
Confidence                 55431        333444557788999999998874  5899999999889999999887

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.94  E-value=2.6e-26  Score=198.95  Aligned_cols=187  Identities=18%  Similarity=0.294  Sum_probs=133.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|.+|.+++.....+..++..+++|+++||||.|++||+|+||++++++ .++         
T Consensus       164 ~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~-~~~---------  233 (354)
T PRK06358        164 KKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNK-NLA---------  233 (354)
T ss_pred             HHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCH-HHH---------
Confidence            3788999999999999999999998764433344455668999999999999999999999998652 232         


Q ss_pred             hhhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..+.... .++.+...+ .+...++.  ..+++++.++.++++++.+.+.|++++++.. .+|+| .|+|     
T Consensus       234 -----~~~~~~~~~~~~~~~~q-~~~~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~~~~g-~f~~-----  298 (354)
T PRK06358        234 -----EKLLQMREPWSINTFAD-LAGQTLLD--DKEYIKKTIQWIKEEKDFLYNGLSEFKGIKV-YKPSV-NFIF-----  298 (354)
T ss_pred             -----HHHHHhCCCCcchHHHH-HHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHhcCCCcEE-cCCcc-eEEE-----
Confidence                 2332221 223333333 34444442  3467889999999999999999988866553 56754 5889     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                          ++++        ++.++...++ ++||.|.||+.|+.  ++|+|++++.+++ .++.++.|.+++
T Consensus       299 ----~~~~--------~~~~~~~~l~-~~gI~v~~~~~f~~~~~~~iRls~~~~~~-~~~l~~~l~~~~  353 (354)
T PRK06358        299 ----FKLE--------KPIDLRKELL-KKGILIRSCSNYRGLDENYYRVAVKSRED-NKKLLKALEVIL  353 (354)
T ss_pred             ----EEcC--------chHHHHHHHH-HCCeEEEECCCCCCCCCCEEEEEeCCHHH-HHHHHHHHHHHh
Confidence                5554        2455555544 67999999999954  5799999986443 356666665543

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.94  E-value=7.6e-26  Score=199.86  Aligned_cols=201  Identities=18%  Similarity=0.265  Sum_probs=139.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|.++.... ....... ...+++|+++||||. ++||+|+||+++++  ++++.   +   
T Consensus       202 ~~l~~~a~~~~~~iI~De~Y~~~~~~~-~~~~~~~-~~~~~vI~~~SfSK~-~~pGlRiG~~i~~~--~l~~~---~---  270 (416)
T PRK09440        202 EKLDALARQHNIPLLIDNAYGPPFPGI-IFSEATP-LWNPNIILCMSLSKL-GLPGVRCGIVIADE--EIIEA---L---  270 (416)
T ss_pred             HHHHHHHHHcCCcEEEeCCccccCCCc-chhhcCc-cccCCeEEEeccccc-CCCcceEEEEeCCH--HHHHH---H---
Confidence            478999999999999999998643211 1111111 125789999999996 99999999999987  44432   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHH-HHHHHHHHHHHHHHHhhc-CCCcc-cccCCCccEEEEEe
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSK-ITDILREAADICCDRLKE-IPCIT-CPKKPEGSMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-~~~~~~~~~~~l~~~L~~-~~~~~-~~~~~~~g~~~~~~  156 (233)
                           ..+......+.+...| .+++.++.++ ..++..+ .++.+++|++.+.+.|++ ++++. .+..|+||+|+|  
T Consensus       271 -----~~~~~~~~~~~s~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~gg~fiw--  342 (416)
T PRK09440        271 -----SNMNGIISLAPGRLGP-AIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIFLW--  342 (416)
T ss_pred             -----HHHHHHhccCCCcHHH-HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecCCCceEEE--
Confidence                 2223322333333444 5555555544 3345544 688899999999999977 44332 235799999999  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC---------CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL---------KDWLRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---------~~~~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                             ++++.  . +. ++.++.. .++++||.|.||+.|+.         .+|+|||++.+.+++++++++|.++++
T Consensus       343 -------~~~~~--~-~~-~~~~~~~-~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~~~~~l~~~i~~l~~~~~  410 (416)
T PRK09440        343 -------LWFKD--L-PI-TTEELYQ-RLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKGIAILAEEVE  410 (416)
T ss_pred             -------EECCC--C-CC-CHHHHHH-HHHHCCEEEechHhhCCCCccccCCcCceEEEEecCCHHHHHHHHHHHHHHHH
Confidence                   55542  1 11 3445554 56788999999999953         259999998888999999999999998


Q ss_pred             HHhhc
Q 047983          228 RHAKK  232 (233)
Q Consensus       228 ~~~~~  232 (233)
                      +..++
T Consensus       411 ~~~~~  415 (416)
T PRK09440        411 KAYAE  415 (416)
T ss_pred             HHhhc
Confidence            86553

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.94  E-value=4.3e-26  Score=197.18  Aligned_cols=189  Identities=19%  Similarity=0.340  Sum_probs=137.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|.++.+++ .+.++...+ .+++|+++|+||.||+||+|+||+++++  .++++   +   
T Consensus       159 ~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~-~~~~i~~~s~SK~~g~~GlRiG~~~~~~--~~~~~---~---  228 (350)
T TIGR03537       159 KETIAMCREHGIILCSDECYTEIYFGE-PPHSALEVG-IENVLAFHSLSKRSGMTGYRSGFVAGDE--KLISF---L---  228 (350)
T ss_pred             HHHHHHHHHcCcEEEEeccccccccCC-CCCchhhcC-cCCEEEEeecccccCCccccceeeecCH--HHHHH---H---
Confidence            368899999999999999999987764 333444444 3799999999999999999999999876  34421   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                           ..+......+.+...+..+.+.+ .  .++++++.++.++++++.+.+.|++. ++. +.+|+||+|+|      
T Consensus       229 -----~~~~~~~~~~~~~~~q~~~~~~l-~--~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~-~~~~~g~~~~~------  292 (350)
T TIGR03537       229 -----RKLRANFGVASPDFVQAAAKAAW-S--DDNHVLERRKIFKRKRDLFIEFFNKV-GLE-YLYPDATFYLW------  292 (350)
T ss_pred             -----HHHHHhhccCCCHHHHHHHHHHh-C--CcHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCCCeEEEEE------
Confidence                 22222222222212222333443 2  35678889999999999999999887 455 36899999999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKA  224 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~  224 (233)
                         ++++..    . ++.+++..++ ++||.|.||+.|+.  .+|+|++++.+++++++++++|++
T Consensus       293 ---~~~~~~----~-~~~~l~~~L~-~~gv~v~~g~~f~~~~~~~~Ri~~~~~~~~~~~~l~~~~~  349 (350)
T TIGR03537       293 ---VKVPSG----I-DAKDYALRLL-ENGIVVAPGENFGSGEEGYVRVALVPTLEECEEALRLWER  349 (350)
T ss_pred             ---EECCCC----C-CHHHHHHHHH-HCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHhc
Confidence               655421    1 3555655554 67999999999975  589999998788999999999875

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.94  E-value=6.3e-26  Score=200.00  Aligned_cols=199  Identities=21%  Similarity=0.267  Sum_probs=143.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||++||+||+|.++.+++. +.++..+.. .+++|+++||||.|++||+|+||+++++  .+++.   +  
T Consensus       202 ~~l~~la~~~~~~iI~DEaY~~~~~~~~-~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~~--~l~~~---l--  273 (410)
T PRK06290        202 EEVVDFAKENNIIVVQDAAYAALTFDGK-PLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNE--LIVKA---F--  273 (410)
T ss_pred             HHHHHHHHHcCeEEEEecchhhceeCCC-CcChhcCCCccccEEEEeechhhcCCchhheEeEEeCH--HHHHH---H--
Confidence            3688999999999999999999988753 334444433 4678999999999999999999999987  44421   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                            .+.......+.+...| .+...++++  .+++++.++.++++++.+.+.|+++ ++.. .+|+||+|+|     
T Consensus       274 ------~~~~~~~~~~~~~~~q-~aa~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~p~g~f~l~-----  337 (410)
T PRK06290        274 ------ATVKDNNDSGQFIAIQ-KAGIYALDH--PEITEKIREKYSRRLDKLVKILNEV-GFKA-EMPGGTFYLY-----  337 (410)
T ss_pred             ------HHHHhccccCCcHHHH-HHHHHHhhC--cHHHHHHHHHHHHHHHHHHHHHHhC-CCee-cCCCeeeEEE-----
Confidence                  2222222222222333 455555543  3678899999999999999999987 5553 6799999999     


Q ss_pred             CcccccccccccCC--CCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec---CHHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEG--INSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV---EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       160 ~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~---~~~~l~~~~~~l~~~l~~~  229 (233)
                          ++++.....+  ..++.+++.+++++.+|+++||+.|+  +|+||+++.   ++++-++.++.|.+.|.+.
T Consensus       338 ----v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~--~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~  406 (410)
T PRK06290        338 ----VKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG--HFLRFSVTFEAKDEEEEDRILEEIKRRLSDV  406 (410)
T ss_pred             ----EECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcccc--CeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence                6554221101  12467888888888889999998876  799999994   5566677777777776553

>PLN02672 methionine S-methyltransferase

Probab=99.94  E-value=1.2e-25  Score=213.36  Aligned_cols=201  Identities=18%  Similarity=0.210  Sum_probs=144.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcc--cccc----ccCC---ccCEEEEccCccccCCCCceEEEEEecCCCccc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHF--VPMG----VFGS---IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL   71 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~--~~~~----~~~~---~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~   71 (233)
                      ++|+++|++||++||+||+|+++.|++...  .++.    ..+.   ..++|+++||||.|++||+|+||+++++. .++
T Consensus       852 e~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~-eLi  930 (1082)
T PLN02672        852 EEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDS-VLI  930 (1082)
T ss_pred             HHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCH-HHH
Confidence            378999999999999999999999976431  1121    1121   24799999999999999999999999762 133


Q ss_pred             cccchhhhhhhhhHHhhhhhhhhcc-CcchHH--HHHHHHhh--hc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc
Q 047983           72 QDLGVAFFHSISLNMRMDDYLLLSE-SVYTTV--GAVPQILE--KT-EEEFFSKITDILREAADICCDRLKEIPCITCPK  145 (233)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~l~--~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  145 (233)
                                    ..+......+. ....+.  .+...++.  .. ..+++.+.++.+++|++++.+.|++. ++. +.
T Consensus       931 --------------~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~-Gi~-v~  994 (1082)
T PLN02672        931 --------------DAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEAC-GWD-VL  994 (1082)
T ss_pred             --------------HHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCe-Ee
Confidence                          33333222221 122232  12222221  12 34678899999999999999999987 565 47


Q ss_pred             CCCccEEEEEecCCCccccccc----------cccc-CC-CCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHH
Q 047983          146 KPEGSMFVMYCGSEDKCLLKLN----------YSLL-EG-INSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPS  213 (233)
Q Consensus       146 ~~~~g~~~~~~~~~~~~~~~~~----------~~~~-~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~  213 (233)
                      +|+||||+|         ++++          .+.. .+ ..++.++..++++++||.+.||+.|+.++|+||+++.+++
T Consensus       995 ~PeGGFfLw---------l~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIsfa~~~e 1065 (1082)
T PLN02672        995 EPQGGISMV---------AKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFSFALEDS 1065 (1082)
T ss_pred             cCCcEEEEE---------EEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEEecCCHH
Confidence            899999999         4321          1100 00 1146788888888889999999999888999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 047983          214 AFEIGLGRMKAFYY  227 (233)
Q Consensus       214 ~l~~~~~~l~~~l~  227 (233)
                      ++++++++|.++.+
T Consensus      1066 ~LeeALerL~kf~~ 1079 (1082)
T PLN02672       1066 EFDRALKAIARFKE 1079 (1082)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998764

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.94  E-value=2.2e-25  Score=195.73  Aligned_cols=195  Identities=18%  Similarity=0.283  Sum_probs=141.7

Q ss_pred             ChHHHHHHH------cCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCcccccc
Q 047983            1 FCIEETTKK------LGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDL   74 (233)
Q Consensus         1 ~~i~~l~~~------~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~   74 (233)
                      ++|+++|++      ||++||+||+|.++.+++....++.  ...+++++++|+||.|++||+|+||+++++  .+.+..
T Consensus       191 ~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~--~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~--~~~~~~  266 (394)
T PRK06836        191 KALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIF--KYYDNSIVVYSFSKSLSLPGERIGYIAVNP--EMEDAD  266 (394)
T ss_pred             HHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChH--HccCcEEEEecchhhccCcceeeEEEecCH--HHhhhH
Confidence            368899999      8999999999999988764333332  234689999999999999999999999987  332110


Q ss_pred             chhhhhhhhhHHhhhhhhhh--ccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccE
Q 047983           75 GVAFFHSISLNMRMDDYLLL--SESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSM  151 (233)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~  151 (233)
                      .+.        .........  ..+.+... .+++.++++.      ..++.++++++.+.+.|+++ ++. +..|.||+
T Consensus       267 ~~~--------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~r~~l~~~L~~~-g~~-~~~~~gg~  330 (394)
T PRK06836        267 DLV--------AALVFANRILGFVNAPALMQRVVAKCLDAT------VDVSIYKRNRDLLYDGLTEL-GFE-CVKPQGAF  330 (394)
T ss_pred             HHH--------HHHHHHhhccccccCCHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHhC-CCE-eecCCceE
Confidence            111        111111110  11223322 5666665432      13567889999999999887 555 37899999


Q ss_pred             EEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHhh
Q 047983          152 FVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                      |+|         ++++..      ++.+++ ..|+++||.|.||+.|+..+|+||+++.+++++++++++|.+++++|++
T Consensus       331 ~~~---------~~~~~~------~~~~~~-~~l~~~gv~v~~g~~f~~~~~iRi~~~~~~~~~~~~i~~l~~~l~~~~~  394 (394)
T PRK06836        331 YLF---------PKSPEE------DDVAFC-EKAKKHNLLLVPGSGFGCPGYFRLSYCVDTETIERSLPAFEKLAKEYKG  394 (394)
T ss_pred             EEE---------EeCCCC------CHHHHH-HHHHhCCEEEECchhcCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhcC
Confidence            999         555421      355555 6677889999999999878999999998999999999999999999874

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.94  E-value=1.6e-25  Score=192.30  Aligned_cols=184  Identities=17%  Similarity=0.160  Sum_probs=128.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++++++||+||+|.+|.+++. ..........+++|+++||||.|++||+|+||+++++  +++          
T Consensus       146 ~l~~~a~~~~~~iI~DE~Y~~~~~~~~-~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~--~li----------  212 (332)
T PRK06425        146 TISEICRKKGALLFIDEAFIDFVPNRA-EEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDD--YNM----------  212 (332)
T ss_pred             HHHHHHHHcCCEEEEecchhccccccc-hhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCH--HHH----------
Confidence            688999999999999999999987542 1122222345799999999999999999999999987  343          


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCCc
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDK  161 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (233)
                          ..+..... ..+...  .+.+.+.....+.++++.++.++++++.+.+.|+++ ++.. ..|.+|.|+|       
T Consensus       213 ----~~l~~~~~-~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~-~~~~~g~f~~-------  276 (332)
T PRK06425        213 ----KISRKITE-PWSVCD--PAIDFIRSIDLDYVAKHSLDIMENERSYLINNLEAM-GFRA-AGDPSANFIT-------  276 (332)
T ss_pred             ----HHHHHcCC-CCccCH--HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEE-CCCCCceEEE-------
Confidence                33332211 111111  112222111234677889999999999999999987 4543 3445788999       


Q ss_pred             ccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          162 CLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                        ++++        ++.++...++ ++||.|+||+.|+.  ++|+|++++..+ +.+..++.|++++
T Consensus       277 --~~~~--------~~~~~~~~l~-~~gi~v~~~~~f~~~~~~~iRis~~~~~-~~~~l~~al~~~~  331 (332)
T PRK06425        277 --FMIP--------DAHDFYSYLL-KNGILVRLLDDYECLGEQYIRIAIRRRS-FNIKLVNALRNFL  331 (332)
T ss_pred             --EEcC--------CHHHHHHHHH-HCCeEEEECCCCCCCCCCEEEEEeCCHH-HHHHHHHHHHHHh
Confidence              5553        2566665555 57999999999964  579999999654 4466666666543

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.94  E-value=1.5e-25  Score=194.52  Aligned_cols=185  Identities=17%  Similarity=0.259  Sum_probs=134.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|+++++ +|+||+|.+|.+++.....+..++..+++|+++||||.|++||+|+||+++++  +++         
T Consensus       168 ~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~--~~~---------  235 (360)
T PRK07392        168 EAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHP--DRL---------  235 (360)
T ss_pred             HHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCH--HHH---------
Confidence            478999999986 66699999998765332223334556789999999999999999999999987  343         


Q ss_pred             hhhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..+.... .++.+...+ .++.+++++  ..+.+..++.++++++.+.+.|++++++..  .|.+++|+|     
T Consensus       236 -----~~~~~~~~~~~~s~~~q-~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~--~~~~~~fl~-----  300 (360)
T PRK07392        236 -----QRWQQWRDPWPVNGLAA-AAAIAALAD--RDFQQQTWAWLPPAREALFQGLASLPGLTP--LPSAANFLL-----  300 (360)
T ss_pred             -----HHHHhhCCCCCCCHHHH-HHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEE--CCCCCCEEE-----
Confidence                 3333221 133333333 555555543  456777788899999999999988877653  457899999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecC--HHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVE--PSAFEIGLGRMK  223 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~--~~~l~~~~~~l~  223 (233)
                          ++++  .     ++.++..++++++||.|.||+.|+.  .+|+||+++.+  .+.+.++++++.
T Consensus       301 ----~~~~--~-----~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~l~~al~~~~  357 (360)
T PRK07392        301 ----VQSQ--G-----SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRTEAENQRLLEALAAIL  357 (360)
T ss_pred             ----EEcC--C-----CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence                5543  1     3667777778889999999999975  57999999974  356666666543

>PLN02397 aspartate transaminase

Probab=99.93  E-value=3.3e-25  Score=196.22  Aligned_cols=188  Identities=16%  Similarity=0.121  Sum_probs=135.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCC--ccccccccC-CccCEEEEccCccccCCCCceEEEEE--ecCCCccccccc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNT--HFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLV--TSDPNGILQDLG   75 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~--~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~--~~~~~~~~~~~~   75 (233)
                      ++|+++|++||++||+||+|.+|.+++.  .+.++..+. ..+++|+++||||.|+++|||+||++  +++. ++++  .
T Consensus       217 ~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~-~~~~--~  293 (423)
T PLN02397        217 EQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSA-DVAV--R  293 (423)
T ss_pred             HHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCH-HHHH--H
Confidence            4789999999999999999999998651  223333332 33579999999999999999999986  3321 2222  1


Q ss_pred             hhhhhhhhhHHhhhhhhh-hccCcchHH-HHHHHHhhhcH--H---HHHHHHHHHHHHHHHHHHHHhhcCC---Cccccc
Q 047983           76 VAFFHSISLNMRMDDYLL-LSESVYTTV-GAVPQILEKTE--E---EFFSKITDILREAADICCDRLKEIP---CITCPK  145 (233)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~~--~---~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~  145 (233)
                      +.        ..+..... ...+++.+. .+++.+++++.  +   ++++++++.+++|++.+.+.|++++   ++.+ .
T Consensus       294 ~~--------~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~-~  364 (423)
T PLN02397        294 VK--------SQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSH-I  364 (423)
T ss_pred             HH--------HHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc-c
Confidence            22        23322221 122334433 55556565431  2   3478899999999999999999873   2553 6


Q ss_pred             CCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee-cCHHHHHHHHHHHHH
Q 047983          146 KPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA-VEPSAFEIGLGRMKA  224 (233)
Q Consensus       146 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~-~~~~~l~~~~~~l~~  224 (233)
                      .|+||||+|           +++        +.+++.++++++||.+.++      +  |++++ .+.+++++++++|.+
T Consensus       365 ~p~gg~fl~-----------~~l--------~~~~~~~Ll~~~~V~v~~~------~--Ri~~~~~~~~~i~~~~~~i~~  417 (423)
T PLN02397        365 TKQIGMFSF-----------TGL--------NKEQVDRMTKEYHIYMTRD------G--RISMAGLSSKNVPYLADAIHA  417 (423)
T ss_pred             cCCceEEEe-----------cCC--------CHHHHHHHHHhCCEEECCC------C--eEEEeeCCHHHHHHHHHHHHH
Confidence            799999999           443        3459999999999999853      2  99998 599999999999999


Q ss_pred             HHH
Q 047983          225 FYY  227 (233)
Q Consensus       225 ~l~  227 (233)
                      +++
T Consensus       418 ~~~  420 (423)
T PLN02397        418 VVT  420 (423)
T ss_pred             HHh
Confidence            985

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.93  E-value=7e-25  Score=192.63  Aligned_cols=186  Identities=18%  Similarity=0.154  Sum_probs=135.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCC-CccccccccC-CccCEEEEccCccccCCCCceEEEEEe--cCCCccccccch
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGN-THFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVT--SDPNGILQDLGV   76 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~-~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~--~~~~~~~~~~~~   76 (233)
                      ++|+++|++||++||+||+|.++.++. ....++..+. ..+++|+++||||.|++||+|+||+++  ++. +.+.  .+
T Consensus       195 ~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~~~~~~-~~~~--~~  271 (396)
T PRK09257        195 DELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVGALSVVAEDA-EEAD--RV  271 (396)
T ss_pred             HHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccceeEEEEeCCH-HHHH--HH
Confidence            478999999999999999999998752 2234444443 346899999999999999999999984  221 2221  12


Q ss_pred             hhhhhhhhHHhhhhhhh-hccCcchHH-HHHHHHhhhc-----HHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccC
Q 047983           77 AFFHSISLNMRMDDYLL-LSESVYTTV-GAVPQILEKT-----EEEFFSKITDILREAADICCDRLKEIP---CITCPKK  146 (233)
Q Consensus        77 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~  146 (233)
                      +        ..+..... ...+++... .+++.++...     .+++++++++.+++|++.+.+.|++..   ++. +..
T Consensus       272 ~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~~~~~~~-~~~  342 (396)
T PRK09257        272 L--------SQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPSRDFD-FIA  342 (396)
T ss_pred             H--------HHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-ccc
Confidence            2        33322211 112223333 5666666543     257888999999999999999998853   244 368


Q ss_pred             CCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHHHHH
Q 047983          147 PEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRMKAF  225 (233)
Q Consensus       147 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l~~~  225 (233)
                      |+||+|+|         +++          +.+++.++++++||.+.|.      +  |++++. +++.+++++++|.++
T Consensus       343 p~gg~~~w---------~~l----------~~~~~~~l~~~~~V~~~p~------~--ri~~~~~~~~~i~~~~~~i~~~  395 (396)
T PRK09257        343 RQRGMFSY---------SGL----------TPEQVDRLREEFGVYAVGS------G--RINVAGLNESNIDYVAEAIAAV  395 (396)
T ss_pred             ccceEEEe---------cCC----------CHHHHHHHHHcCCEEEcCC------C--eEEEeeCCHHHHHHHHHHHHhh
Confidence            99999999         444          3467788899999999983      2  999985 999999999999865

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.93  E-value=8.5e-25  Score=192.57  Aligned_cols=187  Identities=18%  Similarity=0.163  Sum_probs=134.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCC--ccccccccC-CccCEEEEccCccccCCCCceEEEEE---ecCCCcccccc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNT--HFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLV---TSDPNGILQDL   74 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~--~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~---~~~~~~~~~~~   74 (233)
                      ++|+++|++|+++||+||+|.+|.+++.  .+.++..+. ..+++|+++||||.|++||+|+||++   +++  ++++  
T Consensus       199 ~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~--~~~~--  274 (404)
T PTZ00376        199 KEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCANK--EEAA--  274 (404)
T ss_pred             HHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCCH--HHHH--
Confidence            3789999999999999999999998642  222333332 23689999999999999999999984   443  3332  


Q ss_pred             chhhhhhhhhHHhhhhhhh-hccCcchHH-HHHHHHhhhcH--H---HHHHHHHHHHHHHHHHHHHHhhcCC---Ccccc
Q 047983           75 GVAFFHSISLNMRMDDYLL-LSESVYTTV-GAVPQILEKTE--E---EFFSKITDILREAADICCDRLKEIP---CITCP  144 (233)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~~--~---~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~  144 (233)
                      .++        ..+..... ...+.+.+. .+.+.++++..  +   +++++.++.+++|++.+.+.|++++   ++. +
T Consensus       275 ~l~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~  345 (404)
T PTZ00376        275 NVL--------SQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWE-H  345 (404)
T ss_pred             HHH--------HHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc-c
Confidence            122        33322211 112223333 55555555432  2   4467778899999999999998863   233 2


Q ss_pred             cCCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee-cCHHHHHHHHHHHH
Q 047983          145 KKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA-VEPSAFEIGLGRMK  223 (233)
Q Consensus       145 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~-~~~~~l~~~~~~l~  223 (233)
                      ..|+||+|+|         +++          +.+++.++++++||.+.||.        |++++ .+.+++++++++|.
T Consensus       346 ~~p~gg~f~~---------~~~----------~~~~~~~L~~~~~v~v~p~~--------Ris~~~~~~~~~~~~~~~l~  398 (404)
T PTZ00376        346 IINQIGMFSF---------TGL----------TKEQVERLIEKYHIYLLDNG--------RISVAGLTSKNVDYVAEAIH  398 (404)
T ss_pred             cccCceEEEe---------cCC----------CHHHHHHHHHhCCEeecCCC--------eEEEeccCHHhHHHHHHHHH
Confidence            5789999999         443          45788899989999999971        99998 58999999999999


Q ss_pred             HHHH
Q 047983          224 AFYY  227 (233)
Q Consensus       224 ~~l~  227 (233)
                      +++.
T Consensus       399 ~~~~  402 (404)
T PTZ00376        399 DVVR  402 (404)
T ss_pred             HHHh
Confidence            8875

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=1e-24  Score=189.62  Aligned_cols=180  Identities=16%  Similarity=0.215  Sum_probs=122.9

Q ss_pred             HHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhhh
Q 047983            3 IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSI   82 (233)
Q Consensus         3 i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~   82 (233)
                      |++.|+ ++++||+||+|.+|.+..   ..+...+..+|+|+++||||.|++||+|+||+++++  +++           
T Consensus       177 l~~~~~-~~~~iI~Deay~~f~~~~---~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~--~l~-----------  239 (364)
T PRK04781        177 ALQALQ-GKALVVVDEAYGEFSDVP---SAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANA--ELI-----------  239 (364)
T ss_pred             HHHhCC-CCcEEEEeCcchhhcCCc---chHHHHhhCCCEEEEecChhhcccccceeeeeeCCH--HHH-----------
Confidence            444443 479999999999997532   122223556889999999999999999999999987  344           


Q ss_pred             hhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCCc
Q 047983           83 SLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDK  161 (233)
Q Consensus        83 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (233)
                         ..+.... .++.+...+ .+...+++++..++..+..+.++++++.+.+.|++++++.. ..|.+|+|+|       
T Consensus       240 ---~~l~~~~~~~~~~~~~~-~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~~p~~g~f~~-------  307 (364)
T PRK04781        240 ---AVLRRCQAPYPVPTPCA-ALAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVRR-VYPSQGNFLL-------  307 (364)
T ss_pred             ---HHHHhccCCCCCCHHHH-HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCe-ECCCCCcEEE-------
Confidence               3333322 233333444 33334555443455566666789999999999988866542 4577899999       


Q ss_pred             ccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-CCcEEEEeecCHHHHHHHHHHHH
Q 047983          162 CLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-KDWLRITFAVEPSAFEIGLGRMK  223 (233)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~Rl~~~~~~~~l~~~~~~l~  223 (233)
                        ++++         +.+.+.+.++++||.|.||..|+. ++|+||+++.+++ .+..++.|+
T Consensus       308 --~~~~---------~~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris~~~~~~-~~~l~~al~  358 (364)
T PRK04781        308 --VRFD---------DAEAAFQALLAAGVVVRDQRAAPRLSDALRITLGTPEQ-NDRVLAALQ  358 (364)
T ss_pred             --EEcC---------CHHHHHHHHHHCCeEEeeCCCCCCCCCeEEEeCCCHHH-HHHHHHHHH
Confidence              5553         234455667789999999987754 6899999996432 244444443

>PRK07908 hypothetical protein; Provisional

Probab=99.92  E-value=5e-24  Score=184.18  Aligned_cols=184  Identities=18%  Similarity=0.238  Sum_probs=132.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++ +.++|+||+|+++..+  ...++... ..+++++++||||.|++||+|+||+++++  +++         
T Consensus       159 ~~l~~l~~~-~~~iIvDe~y~~~~~~--~~~~l~~~-~~~~~i~i~S~SK~~~l~GlRiG~~~~~~--~~~---------  223 (349)
T PRK07908        159 EQLLALRRP-GRILVVDEAFADAVPG--EPESLAGD-DLPGVLVLRSLTKTWSLAGLRVGYALGAP--DVL---------  223 (349)
T ss_pred             HHHHHHHhc-CCEEEEECcchhhccC--Cccccccc-cCCCEEEEeecccccCCccceeeeeecCH--HHH---------
Confidence            368888864 7888899999998643  23344433 33689999999999999999999999876  344         


Q ss_pred             hhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..+..... ++.++..+ .++..+++....+++++.++.++++++.+.+.|+++ ++.. ..|.+|+|+|     
T Consensus       224 -----~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~-~~p~~g~~~~-----  290 (349)
T PRK07908        224 -----ARLTRGRAHWPVGTLQL-EAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV-GARV-VDPAAAPFVL-----  290 (349)
T ss_pred             -----HHHHhcCCCCCccHHHH-HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC-CcEe-ccCCCceEEE-----
Confidence                 33332211 22232222 556666654455788999999999999999999887 5653 6778999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                          ++++         +.+.+.+.|+++||.|.||+.|+.  .+|+|+|++. +++.+++++.|++++
T Consensus       291 ----~~~~---------~~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~~-~~~~~~l~~al~~~~  345 (349)
T PRK07908        291 ----VRVP---------DAELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVRP-RAEVPVLVQALAEIL  345 (349)
T ss_pred             ----EECC---------cHHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeCC-CccHHHHHHHHHHHH
Confidence                5543         245677778899999999999964  6899999985 334466666665554

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.92  E-value=2.9e-24  Score=186.19  Aligned_cols=184  Identities=23%  Similarity=0.343  Sum_probs=127.2

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++++++||+||+|.+|.+++..+.+.  +...+++|+++||||.|++||+|+||++++++ .++          
T Consensus       166 ~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~--~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~-~~~----------  232 (356)
T PRK08056        166 AIAERCKSLNIALILDEAFIDFIPDETGFIPQ--LADNPHLWVLRSLTKFYAIPGLRLGYLVNSDD-AAV----------  232 (356)
T ss_pred             HHHHHHHhcCCEEEEecchhccCCcchHHHHH--hccCCCEEEEEechhhccCcchhheeeecCCH-HHH----------
Confidence            68899999999999999999998765332222  23346899999999999999999999998642 232          


Q ss_pred             hhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           82 ISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        82 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                          ..+..... ++.+...+ .+...++.  ...+.++.++.++++++.+.+.|++++++.. . |.+|+|+|      
T Consensus       233 ----~~l~~~~~~~~~~~~~~-~~a~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~-~~~~~~~~------  297 (356)
T PRK08056        233 ----ARMRRQQMPWSINAFAA-LAGEVILQ--DRAYQQATWQWLAEEGARFYQALCALPLLTV-W-PGRANYLF------  297 (356)
T ss_pred             ----HHHHHhCCCCchhHHHH-HHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHhcCCCcEE-c-CCCCcEEE------
Confidence                33332211 22222222 33344442  3567888899999999999999988867653 3 44789999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAF  225 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~  225 (233)
                         ++++.       ++.++...++ ++||.|.||+.|+.  .+|+||+++.++ +.+..++.|.++
T Consensus       298 ---~~~~~-------~~~~~~~~l~-~~gI~v~~~~~f~~~~~~~iRis~~~~~-~~~~l~~~l~~~  352 (356)
T PRK08056        298 ---LRCER-------PDIDLQRALL-TQRILIRSCANYPGLDSRYYRVAIRSAA-ENERLLAALRNV  352 (356)
T ss_pred             ---EEcCC-------ChHHHHHHHH-HCCeEEEECCCCCCCCCCEEEEEEcCHH-HHHHHHHHHHHH
Confidence               55541       2445555544 78999999999954  479999998633 334555555444

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=2.3e-24  Score=186.89  Aligned_cols=184  Identities=16%  Similarity=0.217  Sum_probs=131.2

Q ss_pred             hHHHHHHH--cCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKK--LGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~--~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++++.  +|++||+||+|.++.+++..+..+..++..+++|+++||||.|++||+|+||+++++  +++        
T Consensus       172 ~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~--~~~--------  241 (359)
T PRK03158        172 ELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASE--ELI--------  241 (359)
T ss_pred             HHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCH--HHH--------
Confidence            56667765  599999999999998765433333444556799999999999999999999999987  344        


Q ss_pred             hhhhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           80 HSISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                            ..+.... .++.+...+ .++.++++  ..++.++.++.++++++.+.+.|++. ++..  .|.+|+|+|    
T Consensus       242 ------~~~~~~~~~~~~~~~~q-~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~--~~~~g~~i~----  305 (359)
T PRK03158        242 ------EKLNIARPPFNTTRIAQ-YAAIAALE--DQAFLKECVEKNAEGLEQYYAFCKEY-GLFY--YPSQTNFIF----  305 (359)
T ss_pred             ------HHHHHhcCCCCCCHHHH-HHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHC-CCee--CCCcCcEEE----
Confidence                  2332221 133333333 44555553  24677888888999999999999887 5543  355688999    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAF  225 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~  225 (233)
                           ++++  .     ++.++...+ .++||.|.||+.|+..+|+|++++. .++.+..++.|+++
T Consensus       306 -----~~~~--~-----~~~~~~~~l-~~~gv~v~~g~~f~~~~~iRi~~~~-~~~~~~l~~al~~~  358 (359)
T PRK03158        306 -----VDTG--R-----DANELFEAL-LKKGYIVRSGAALGFPTGVRITIGL-KEQNDKIIELLKEL  358 (359)
T ss_pred             -----EECC--C-----CHHHHHHHH-HHCCeEEeeCCCCCCCCeEEEecCC-HHHHHHHHHHHHHh
Confidence                 5442  1     255555555 4679999999999878999999984 44567777777654

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=3.8e-24  Score=185.50  Aligned_cols=178  Identities=19%  Similarity=0.277  Sum_probs=128.9

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++ +++||+||+|.+|.+++.   .+..+...+++|+++||||.|++||+|+||+++++  +++          
T Consensus       178 ~l~~~~~~-~~~iI~De~y~~~~~~~~---~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~--~~~----------  241 (357)
T PRK14809        178 ALAERTDE-ETLVVVDEAYGEFAERPS---AVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPE--EWA----------  241 (357)
T ss_pred             HHHHhCcc-CcEEEEechhhhccCCch---hHHHHhhCCCEEEEecchhHhcCcchhheeeecCH--HHH----------
Confidence            34444443 789999999999986432   22233456789999999999999999999999987  343          


Q ss_pred             hhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           82 ISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                          .++.... .++.+...+..+++.+ .  .++++++.++.++++++.+.+.|+..      ..|.+|+|+|      
T Consensus       242 ----~~~~~~~~~~~~~~~~~~~a~~~l-~--~~~~~~~~~~~~~~~r~~l~~~L~~~------~~~~~g~f~~------  302 (357)
T PRK14809        242 ----DAYARVNTPFAASELACRAGLAAL-D--DDEHVERTVETARWAREYIREELDAP------TWESAGNFVL------  302 (357)
T ss_pred             ----HHHHHhCCCCCCCHHHHHHHHHHh-C--CHHHHHHHHHHHHHHHHHHHHHhcCc------cCCCCCCEEE------
Confidence                3333222 2333333332444443 2  36788999999999999999998653      1256889999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                         ++++        ++.++... |+++||.|.||+.|+..+|+|++++. .+++++++++|.++++
T Consensus       303 ---~~~~--------~~~~~~~~-l~~~gv~v~~g~~f~~~~~iRls~~~-~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        303 ---AEVG--------DASAVAEA-AQERGVIVRDCTSFGLPECIRITCGT-REETERAVEVLNEVLA  356 (357)
T ss_pred             ---EECC--------CHHHHHHH-HHHCCEEEEECccCCCCCeEEEecCC-HHHHHHHHHHHHHHhc
Confidence               5542        24555544 67889999999999878999999875 6789999999998874

>PRK08637 hypothetical protein; Provisional

Probab=99.92  E-value=1.2e-23  Score=184.36  Aligned_cols=198  Identities=16%  Similarity=0.167  Sum_probs=138.5

Q ss_pred             ChHHHHHHH-----cCcEEEEccccCccccCCCccccc-cc-cCCccCE--EEEccCccccCCCCceEEEEEecC----C
Q 047983            1 FCIEETTKK-----LGIMVIADEVYGHLVFGNTHFVPM-GV-FGSIVPV--LTLGSISKRWIVPGWRLGWLVTSD----P   67 (233)
Q Consensus         1 ~~i~~l~~~-----~~~~lI~De~y~~~~~~~~~~~~~-~~-~~~~~~~--i~~~s~sK~~~~~G~R~G~~~~~~----~   67 (233)
                      ++|+++|++     ||++||+||+|.++.|++....++ .. .+..+++  ++++|+||.|++||+|+||+++++    +
T Consensus       169 ~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~  248 (388)
T PRK08637        169 TAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSS  248 (388)
T ss_pred             HHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCc
Confidence            367888775     999999999999999877544343 22 2334564  566799999999999999999763    1


Q ss_pred             CccccccchhhhhhhhhHHhhhhh---hhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCC---C
Q 047983           68 NGILQDLGVAFFHSISLNMRMDDY---LLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIP---C  140 (233)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~---~  140 (233)
                      +.+++.  +.        ......   ...+++...| .++..++++. ..++.++.+..+++|++.+.+.|++.+   +
T Consensus       249 ~~l~~~--~~--------~~~~~~~~~~~~~~s~~~q-~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~  317 (388)
T PRK08637        249 QTVKEA--LE--------KKVKGLIRSNISNGPHPSQ-SAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDA  317 (388)
T ss_pred             HHHHHH--HH--------HHHHHHhhcccCCCCcHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            233321  11        111111   1122333333 5556666543 446778888899999999999997642   3


Q ss_pred             cccccCCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHH
Q 047983          141 ITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGL  219 (233)
Q Consensus       141 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~  219 (233)
                      +. +.+|+||+|+|         ++++  .   . ++.+++.++++++||.+.+.    ..+|+||+++. +.+++++++
T Consensus       318 ~~-~~~~~~g~~~~---------~~l~--~---~-~~~~l~~~l~~~~gv~~~~~----~~~~iRi~~~~~~~~~i~~~~  377 (388)
T PRK08637        318 WQ-AYPFNSGYFMC---------LKLK--G---V-DAEELRVHLLEKYGIGTIAL----NETDLRIAFSCVEEEDIPELF  377 (388)
T ss_pred             cc-cccccceEEEE---------ecCC--h---H-HHHHHHHHHhhhcceEEEec----cCCceEEEeecCCHHHHHHHH
Confidence            44 46889999999         6554  1   1 35677777778889998752    35799999997 899999999


Q ss_pred             HHHHHHHHHH
Q 047983          220 GRMKAFYYRH  229 (233)
Q Consensus       220 ~~l~~~l~~~  229 (233)
                      ++|.++++..
T Consensus       378 ~~l~~~~~~~  387 (388)
T PRK08637        378 DSIYKAIKDL  387 (388)
T ss_pred             HHHHHHHHhc
Confidence            9999998754

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.91  E-value=2.8e-23  Score=178.29  Aligned_cols=177  Identities=14%  Similarity=0.144  Sum_probs=121.9

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++++++||+||+|.++..    ..++..+...+++|+++||||.|++||+|+||+++++  +++          
T Consensus       148 ~l~~~~~~~~~~iI~DE~y~~~~~----~~s~~~~~~~~~vi~~~SfSK~~gl~GlRiG~~v~~~--~l~----------  211 (330)
T PRK05664        148 AWHARLAARGGWLVVDEAFMDNTP----QHSLAACAHRPGLIVLRSFGKFFGLAGARLGFVLAEP--ALL----------  211 (330)
T ss_pred             HHHHHHHhcCCEEEEECCcccCCC----cccccccccCCCEEEEeeccccccCCCcceEEEEeCH--HHH----------
Confidence            678889999999999999987641    1244445556789999999999999999999999987  344          


Q ss_pred             hhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcc--EEEEEecC
Q 047983           82 ISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGS--MFVMYCGS  158 (233)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g--~~~~~~~~  158 (233)
                          ..+.... .++.+...+ .+...++.+  ..+.++.++.++++++.+.+.|+++ ++    .|.+|  +|+|    
T Consensus       212 ----~~~~~~~~~~~~~~~~~-~~~~~~L~~--~~~~~~~~~~~~~~r~~l~~~L~~~-~~----~~~~~~~~f~~----  275 (330)
T PRK05664        212 ----RALAELLGPWTVSGPTR-WLAQAALAD--TPWQRRQRERLLAASQRLAALLRRH-GL----TPAGGCALFQW----  275 (330)
T ss_pred             ----HHHHHhcCCCCCCHHHH-HHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHC-CC----cccCCcceEEE----
Confidence                3333322 123333333 444444432  3556788999999999999999887 33    24445  7888    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                             ++.+      ++. .+.+.|+++||.|.+   |+..+++||+++.+.++.++..+.|+++.+
T Consensus       276 -------~~~~------~~~-~~~~~l~~~gi~v~~---f~~~~~iRis~~~~~~~~~~l~~al~~~~~  327 (330)
T PRK05664        276 -------VRTE------DAA-ALHEFLARRGILTRL---FEQPASLRFGLPADEADWARLDQALLAYRK  327 (330)
T ss_pred             -------EecC------CHH-HHHHHHHHCCeEEEE---CCCCCeEEEECCCCHHHHHHHHHHHHHHHh
Confidence                   4432      244 445556788999974   555689999999644455555555554443

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.91  E-value=4.2e-23  Score=180.35  Aligned_cols=194  Identities=16%  Similarity=0.239  Sum_probs=137.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|+++|+++|+||+|.+|..+.   .+...++ .++++++.||||.|+++|+|+||+++++  ++++         
T Consensus       181 ~i~~~a~~~~~~ii~De~y~~~~~~~---~~~~~~~-~~~~i~~~s~SK~~g~~G~RiG~i~~~~--~l~~---------  245 (380)
T PRK06225        181 EFAEIARDNDAFLLHDCTYRDFAREH---TLAAEYA-PEHTVTSYSFSKIFGMAGLRIGAVVATP--DLIE---------  245 (380)
T ss_pred             HHHHHHHHCCcEEEEehhHHHHhccC---CchhhcC-CCCEEEEeechhhcCCccceeEEEecCH--HHHH---------
Confidence            68899999999999999999876432   1222233 3789999999999999999999999987  4443         


Q ss_pred             hhhHHhhhhhh--hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           82 ISLNMRMDDYL--LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        82 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           .+....  ..+.+...+ .+....+. ...++.++.++.++++++.+.+.|+++++......|.+|+|+|     
T Consensus       246 -----~~~~~~~~~~~~~~~~~-~~a~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~-----  313 (380)
T PRK06225        246 -----VVKSIVINDLGTNVIAQ-EAAIAGLK-VKDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMV-----  313 (380)
T ss_pred             -----HHHHHHhcccCCCHHHH-HHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEE-----
Confidence                 222221  223333232 33333332 2356778888889999999999998865543223566788889     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEEeecCHHHHHHHHHHHHHHHHHHhh
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRITFAVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                          +.++..   +. ++.++..++ .++||.+.||..|+.   .+++|++++.+++++++++++|.+++++.+.
T Consensus       314 ----~~~~~~---~~-~~~~l~~~l-~~~gi~v~~g~~~~~~~~~~~iR~s~~~~~e~l~~~~~~l~~~~~~~~~  379 (380)
T PRK06225        314 ----IDISEA---GI-DPEDLVEYL-LERKIFVRQGTYTSKRFGDRYIRVSFSIPREQVEVFCEEFPDVVETLRT  379 (380)
T ss_pred             ----EEcccc---cC-CHHHHHHHH-HHCCEEEcCCcccCcCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHhhc
Confidence                555321   11 345555554 588999999987753   4699999998889999999999999987653

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.91  E-value=5.6e-23  Score=177.08  Aligned_cols=181  Identities=12%  Similarity=0.110  Sum_probs=127.4

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|++.|+++++++|+||+|.+|...    .++..+...+++|+++||||.|++||+|+||+++++  +++          
T Consensus       154 ~l~~~~~~~~~~vI~DEay~~~~~~----~s~~~~~~~~~vi~l~SfSK~~gl~GlRiGy~v~~~--~li----------  217 (339)
T PRK06959        154 RWHAQLAARGGTLIVDEAFADTLPA----ASLAAHTDRPGLVVLRSVGKFFGLAGVRAGFVLAAP--ALL----------  217 (339)
T ss_pred             HHHHHHHHcCCEEEEECCCccCCCc----ccchhccCCCCEEEEecChhhcCCcchheEEEecCH--HHH----------
Confidence            4566677889999999999998643    233333334789999999999999999999999987  444          


Q ss_pred             hhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           82 ISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                          ..+.... .++.+...| .+..++++  ..++.++.++.++++++.+.+.|+++ ++..  . .+++|+|      
T Consensus       218 ----~~l~~~~~~~~vs~~~q-~a~~~~L~--~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~--~-~~~~f~~------  280 (339)
T PRK06959        218 ----AALRDALGAWTVSGPAR-HAVRAAFA--DAAWQAAMRERLAADGARLAALLRAH-GFAV--H-ATPLFSW------  280 (339)
T ss_pred             ----HHHHHhcCCCCCcHHHH-HHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHC-CCCc--c-CcceEEE------
Confidence                3333322 233333344 44445443  34677889999999999999999987 4543  2 3689999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                         ++++        +..+ +...|.++||.|++   |+..+|+||+++.+.++.+..++.|+++++...
T Consensus       281 ---~~~~--------~~~~-l~~~l~~~GI~vr~---~~~~~~lRisi~~~~~e~~~l~~al~~~~~~~~  335 (339)
T PRK06959        281 ---TDDP--------RAAA-LHAALARRGIWTRY---FAPPPSVRFGLPADEAEWQRLEDALAECVPTLA  335 (339)
T ss_pred             ---EeCC--------CHHH-HHHHHHhCCeEEEE---CCCCCeEEEECCCCHHHHHHHHHHHHHHHHHHh
Confidence               4432        1334 45556678999974   455679999996555566777777777766554

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.91  E-value=7.2e-23  Score=166.91  Aligned_cols=197  Identities=20%  Similarity=0.243  Sum_probs=144.9

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++|++||+++|.|.+|+. .|++-.+..+ .+...+|+|.|.|+||. |+||.|+|-+++.+        +++    
T Consensus       203 kldalA~~~giPliIDnAYg~-PFP~iifsd~-~~~w~~NiilC~SLSK~-GLPG~R~GIiIane--------~vi----  267 (417)
T COG3977         203 KLDALARQHGIPLIIDNAYGV-PFPGIIFSDA-TPLWNENIILCMSLSKL-GLPGSRCGIIIANE--------KVI----  267 (417)
T ss_pred             HHHHHhhhcCCcEEEecccCC-CCCceecccc-cccCCCCEEEEeehhhc-CCCCcceeEEEccH--------HHH----
Confidence            467889999999999999985 2223222222 13457899999999999 99999999999987        444    


Q ss_pred             hhhHHhhhhhhhh-ccCcchHH-HHHHHHhhhcHHHH--HHHHHHHHHHHHHHHHHHhhc-CCCcc-cccCCCccEEEEE
Q 047983           82 ISLNMRMDDYLLL-SESVYTTV-GAVPQILEKTEEEF--FSKITDILREAADICCDRLKE-IPCIT-CPKKPEGSMFVMY  155 (233)
Q Consensus        82 ~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~L~~-~~~~~-~~~~~~~g~~~~~  155 (233)
                          ..+.++... +..+.... +..+.+++++.-..  -+-++..|+++.+...+.|++ ++... ..++|+|++|+| 
T Consensus       268 ----qaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~iHkpEGAIFlW-  342 (417)
T COG3977         268 ----QAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLW-  342 (417)
T ss_pred             ----HHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCccceeeecCCcceeeh-
Confidence                444444442 22222222 66667776653322  234678888888888888877 55322 137899999999 


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC---------CCcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL---------KDWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---------~~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                              +++..-   ++  +...+++.|+..||+++||+.|.+         ..++|+++..+++.++.++++|.+.+
T Consensus       343 --------LWf~dL---PI--tt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~~~~~ie~Gva~lae~v  409 (417)
T COG3977         343 --------LWFKDL---PI--TTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPEPEKIEKGVAILAEEV  409 (417)
T ss_pred             --------hhhccC---CC--CHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEEecCCCHHHHHHHHHHHHHHH
Confidence                    665321   22  788889999999999999999964         47899999999999999999999998


Q ss_pred             HHHhh
Q 047983          227 YRHAK  231 (233)
Q Consensus       227 ~~~~~  231 (233)
                      ++.-+
T Consensus       410 e~~yq  414 (417)
T COG3977         410 ERAYQ  414 (417)
T ss_pred             HHHHh
Confidence            87643

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.91  E-value=7.9e-23  Score=172.58  Aligned_cols=200  Identities=21%  Similarity=0.348  Sum_probs=154.8

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccC-----CccCEEEEccCccccCCCCceEEEEEecCCCccccccch
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-----SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGV   76 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-----~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~   76 (233)
                      .++++|.++|++||+||+|..-+|+..++.++..+.     ..+++-.+.|+||-+|+||+|+|.|...++       .+
T Consensus       250 ~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne-------~V  322 (471)
T KOG0256|consen  250 SLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNE-------DV  322 (471)
T ss_pred             HHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecCh-------HH
Confidence            478899999999999999999999998887776542     346799999999999999999999999884       22


Q ss_pred             hhhhhhhhHHhhhhhhhhccCcchHH-HHHHHHhhhc--HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEE
Q 047983           77 AFFHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKT--EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFV  153 (233)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~  153 (233)
                      +        ...+.+..+. ..+++. ..++++|.+.  .++++.+.+++++.+..++.+.|+++ ++.+ .+.++|.|+
T Consensus       323 v--------saA~kmssf~-~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l-gI~c-l~s~AGlF~  391 (471)
T KOG0256|consen  323 V--------SAATKMSSFG-LVSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL-GIPC-LKSNAGLFC  391 (471)
T ss_pred             H--------HHHHHHhhcc-CCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc-CCce-eecCCeeEE
Confidence            3        3334333332 223333 8888888775  35899999999999999999999998 7776 789999999


Q ss_pred             EEecCCCcccccccccccCC---CCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeec-CHHHHHHHHHHHHHHHH
Q 047983          154 MYCGSEDKCLLKLNYSLLEG---INSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAV-EPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~-~~~~l~~~~~~l~~~l~  227 (233)
                      |           ++.+.+..   .+...+.-.+++.+-++.+.||+.|.-  .+|+|+||+. .++.++-+|+||++++.
T Consensus       392 w-----------vDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~  460 (471)
T KOG0256|consen  392 W-----------VDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLD  460 (471)
T ss_pred             E-----------EEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHH
Confidence            9           65554321   112334455666666999999999975  6999999998 55555559999999987


Q ss_pred             HHh
Q 047983          228 RHA  230 (233)
Q Consensus       228 ~~~  230 (233)
                      ...
T Consensus       461 ~~~  463 (471)
T KOG0256|consen  461 SQV  463 (471)
T ss_pred             hhh
Confidence            543

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.90  E-value=9.1e-23  Score=177.34  Aligned_cols=188  Identities=19%  Similarity=0.250  Sum_probs=133.9

Q ss_pred             hHHHHHHHc--CcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKL--GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~--~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++|+.+  |+++|+||+|.++.+++....++..++..+++|+++|+||.|+++|+|+||+++++  ++++       
T Consensus       175 ~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~--~~~~-------  245 (367)
T PRK02731        175 EVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPP--EIID-------  245 (367)
T ss_pred             HHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCH--HHHH-------
Confidence            566777664  99999999999988765433344334455789999999999999999999999987  3442       


Q ss_pred             hhhhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           80 HSISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                             .+.... .++.+..++ .+..++++  ..++.++.++.++++++.+.+.|++. ++.. . |.+|+|+|    
T Consensus       246 -------~l~~~~~~~~~~~~~~-~~a~~~l~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~-~~~g~~~~----  308 (367)
T PRK02731        246 -------ALNRVRQPFNVNSLAL-AAAVAALD--DDAFVEKSRALNAEGMAWLTEFLAEL-GLEY-I-PSVGNFIL----  308 (367)
T ss_pred             -------HHHHccCCCCCCHHHH-HHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHC-CCcc-C-CCCceEEE----
Confidence                   222221 123333333 44444443  25678889999999999999999887 5543 3 55789999    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                           ++++..    . ++.++.. .|.++||.|.|+..|+..+++|++++. .++++..++.|.++++
T Consensus       309 -----i~~~~~----~-~~~~~~~-~L~~~gI~v~~~~~~~~~~~iRis~~~-~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        309 -----VDFDDG----K-DAAEAYQ-ALLKRGVIVRPVAGYGLPNALRITIGT-EEENRRFLAALKEFLA  365 (367)
T ss_pred             -----EECCCC----C-CHHHHHH-HHHHCCEEEEeCCCCCCCCeEEEecCC-HHHHHHHHHHHHHHHh
Confidence                 555321    1 3445544 556789999999988767899999984 5567888888887764

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=4.3e-23  Score=179.85  Aligned_cols=182  Identities=18%  Similarity=0.309  Sum_probs=122.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccC-CccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|+ .+++||+||+|.+|.+++..+..+..+. ..+++|+++||||.|++||+|+||++++++ .+.         
T Consensus       183 ~l~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~-~l~---------  251 (371)
T PRK05166        183 RVLDATP-PETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDP-ELV---------  251 (371)
T ss_pred             HHHHhCC-CCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCH-HHH---------
Confidence            4555554 4889999999999996543332232233 346899999999999999999999887552 233         


Q ss_pred             hhhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..+.... .++.+...+..+.+.+ .  ..+++++.++.++++++.+.+.|++. ++.  ..|.+|+|+|     
T Consensus       252 -----~~~~~~~~~~~~~~~~q~~~~~~l-~--~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~--~~p~~g~fl~-----  315 (371)
T PRK05166        252 -----GLLDRVRTPFNVNGAAQAAALAAL-D--DEEHLAKGVALALAERERLKKELAEM-GYR--IAPSRANFLF-----  315 (371)
T ss_pred             -----HHHHHhccCCCCCHHHHHHHHHHh-c--CHHHHHHHHHHHHHHHHHHHHHHHHC-cCe--eCCCcCCEEE-----
Confidence                 2222211 2333333332444444 2  24678888999999999999999887 554  2466789999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecC--HHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVE--PSAFEIGLGRM  222 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~--~~~l~~~~~~l  222 (233)
                          ++++  .     ++.++...++ ++||.+.||..++..+|+|++++.+  .+.+.++++++
T Consensus       316 ----~~~~--~-----~~~~l~~~l~-~~gi~v~p~~~~~~~~~iRi~~~~~~~~~~l~~~l~~i  368 (371)
T PRK05166        316 ----FDAR--R-----PASAVAEALL-RQGVIVKPWKQPGFETFIRVSIGSPEENDHFVAALDKV  368 (371)
T ss_pred             ----EeCC--C-----CHHHHHHHHH-HCCeEEecCCCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Confidence                5432  1     3555655555 5699999998877789999999973  34555555443

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.90  E-value=7.5e-23  Score=175.67  Aligned_cols=177  Identities=13%  Similarity=0.169  Sum_probs=127.7

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcccccccc-CCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|+++|++||+||+|.++.+..    ++... +..+++|+++|+||.|++||+|+||+++++  +++         
T Consensus       149 ~l~~~a~~~~~~ii~De~y~~~~~~~----~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~--~~~---------  213 (330)
T TIGR01140       149 ALAARLRARGGWLVVDEAFIDFTPDA----SLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHP--ALL---------  213 (330)
T ss_pred             HHHHHhHhcCCEEEEECcccccCCcc----chhhHhccCCCEEEEEecchhhcCchhhhhheeCCH--HHH---------
Confidence            67899999999999999999987542    23222 345789999999999999999999999987  333         


Q ss_pred             hhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..+..+.. ++.+..++ .++.++++  ..++.+..++.++++++.+.+.|++++.+.  ..|.+|+|+|     
T Consensus       214 -----~~l~~~~~~~~~s~~~q-~~~~~~l~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~--~~~~~~~f~~-----  278 (330)
T TIGR01140       214 -----ARLREALGPWTVNGPAR-AAGRAALA--DTAWQAATRARLAAERARLAALLARLGGLE--VVGGTALFLL-----  278 (330)
T ss_pred             -----HHHHhcCCCCCchHHHH-HHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHHhCCCce--ECCCCCeEEE-----
Confidence                 33333322 22222232 55566654  235667889999999999999999986553  3456899999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRM  222 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l  222 (233)
                          ++++        ++.++..++ .++||.+.||+.|+.  .+++|+++++..++ +..+++|
T Consensus       279 ----~~~~--------~~~~l~~~l-~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~-~~~~~~l  329 (330)
T TIGR01140       279 ----VRTP--------DAAALHEAL-ARRGILIRDFDNFPGLDPRYLRFALPTDEEN-DRLEEAL  329 (330)
T ss_pred             ----EEcC--------CHHHHHHHH-HHCCEEEEECCCCCCCCCCEEEEEecCHHHH-HHHHHhh
Confidence                4433        245555555 467999999999963  57999999986554 5555544

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=9.2e-23  Score=178.33  Aligned_cols=171  Identities=20%  Similarity=0.254  Sum_probs=121.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +++.++++.. ++||+||+|.+|.+.+.   ....+...+++|+++||||.|+++|+|+||+++++  +++         
T Consensus       195 ~~l~~l~~~~-~~vi~DeaY~~~~~~~~---~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~--~~i---------  259 (380)
T PLN03026        195 DDLLKILELP-ILVVLDEAYIEFSTQES---RMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPL--SII---------  259 (380)
T ss_pred             HHHHHHHhcC-CEEEEECcchhhcCCcc---hHHHHHhCCCEEEEecchHhhcCccccceeeecCH--HHH---------
Confidence            3567777654 99999999999876432   12223456899999999999999999999999987  344         


Q ss_pred             hhhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..+.... .++.+...+..+.+. ++  ..+++++.++.++++++.+.+.|++++...  ..|.+++|+|     
T Consensus       260 -----~~l~~~~~~~~~~~~~q~aa~~a-L~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~--~~p~~~~f~~-----  324 (380)
T PLN03026        260 -----EYLWRAKQPYNVSVAAEVAACAA-LS--NPKYLEDVKNALVEERERLFGLLKEVPFLE--PYPSDANFIL-----  324 (380)
T ss_pred             -----HHHHHhcCCCCCCHHHHHHHHHH-hh--CHHHHHHHHHHHHHHHHHHHHHHHHCCCCe--ECCCCCeEEE-----
Confidence                 3332221 133333344344444 43  246788999999999999999999885443  3678899999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecC
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVE  211 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~  211 (233)
                          ++++.    +. ++.++...++ ++||.|++++.++..+|+|||++.+
T Consensus       325 ----~~~~~----~~-~~~~~~~~l~-~~gI~v~~~~~~~~~~~lRis~~~~  366 (380)
T PLN03026        325 ----CRVTS----GR-DAKKLKEDLA-KMGVMVRHYNSKELKGYIRVSVGKP  366 (380)
T ss_pred             ----EECCC----CC-CHHHHHHHHH-HCCeEEEECCCCCCCCEEEEecCCH
Confidence                55432    11 3455555555 8899999987765678999999963

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=1.5e-22  Score=176.65  Aligned_cols=180  Identities=20%  Similarity=0.280  Sum_probs=123.2

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|  +|++||+||+|.+|.+..    .+..+...+++|+++||||.||+||+|+||+++++  .++          
T Consensus       192 ~l~~~~--~~~~iI~De~Y~~~~~~~----~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~--~l~----------  253 (374)
T PRK02610        192 WLRSLP--EDILVVIDEAYFEFSQTT----LVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGHP--ELI----------  253 (374)
T ss_pred             HHHhcc--CCcEEEEeccccccCccc----hHHHHhcCCCEEEEEecchhccCcccceeeeecCH--HHH----------
Confidence            344544  489999999999986321    22333445688999999999999999999999976  344          


Q ss_pred             hhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           82 ISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                          ..+.... .++.+...| .+....++ ..+.+.+.+++.+++ ++.+.+.|+.++++.  ..|++|+|+|      
T Consensus       254 ----~~l~~~~~~~~~~~~~q-~a~~~~l~-~~~~~~~~~~~~~~~-r~~l~~~L~~~~~~~--~~p~~g~f~~------  318 (374)
T PRK02610        254 ----AVLEKVRLPYNLPSFSQ-LAAQLALE-HRQELLAAIPEILQE-RDRLYQALQELPQLR--VWPSAANFLY------  318 (374)
T ss_pred             ----HHHHHhcCCCCCCHHHH-HHHHHHhc-CHHHHHHHHHHHHHH-HHHHHHHHHhCCCcE--eCCCcceEEE------
Confidence                3332221 233333344 33444443 345667776766655 677888998776664  3588999999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                         ++++..    . ++.++ .+.|+++||.|.++     ++++||+++.+ +++++++++|.+++...
T Consensus       319 ---~~l~~~----~-~~~~~-~~~l~~~gi~v~~~-----~~~lRls~~~~-~~~~~~l~~l~~~l~~~  372 (374)
T PRK02610        319 ---LRLSQD----A-ALAAL-HQALKAQGTLVRHT-----GGGLRITIGTP-EENQRTLERLQAALTQL  372 (374)
T ss_pred             ---EeCCCC----C-CHHHH-HHHHHHCCEEEEeC-----CCeEEEeCCCH-HHHHHHHHHHHHHHhhc
Confidence               666421    1 24444 45567889999874     37999999965 45799999999988654

>PRK08354 putative aminotransferase; Provisional

Probab=99.89  E-value=5.8e-22  Score=168.86  Aligned_cols=167  Identities=15%  Similarity=0.206  Sum_probs=111.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|+++|++||+||+|.+|.+++..   .    ..+++|+++||||.|++||+|+||+++..        +.+   
T Consensus       140 ~~l~~~a~~~~~~li~De~y~~f~~~~~~---~----~~~~vi~~~S~SK~~~l~GlRiG~~v~~~--------~~l---  201 (311)
T PRK08354        140 KPLLDAVEDRNALLILDEAFIDFVKKPES---P----EGENIIKLRTFTKSYGLPGIRVGYVKGFE--------EAF---  201 (311)
T ss_pred             HHHHHHhhhcCcEEEEeCcchhccccccc---c----CCCcEEEEeccHhhcCCccceeeeeeehH--------HHH---
Confidence            36889999999999999999999886521   1    15789999999999999999999999832        122   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                           ...+..  +..+...+ .++..+++ ...+++.+.++.++++++.+.+.+        ..+|+|+++++      
T Consensus       202 -----~~~~~~--~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l--------~~~~~~~~~~~------  258 (311)
T PRK08354        202 -----RSVRMP--WSIGSTGY-AFLEFLIE-DDFEHLRKTMPLIWREKERFEKAL--------YVKSDANFFIK------  258 (311)
T ss_pred             -----HHcCCC--ccCCHHHH-HHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhc--------CCCCCCcEEEE------
Confidence                 222221  22222222 44555554 333566666677776666654443        13566665554      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCH--HHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEP--SAFEIGLGR  221 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~--~~l~~~~~~  221 (233)
                            +.+      ++.++.. .|+++||.|.||+.|+.++|+||+++.++  +.+.++++.
T Consensus       259 ------~~~------~~~~~~~-~l~~~gv~v~~g~~f~~~~~iRi~~~~~~~~~~l~~al~~  308 (311)
T PRK08354        259 ------DVG------DAEKFVE-FLKRNGILVRDCTSFGLPGYIRFSVRDREENEKLIRALRE  308 (311)
T ss_pred             ------ECC------CHHHHHH-HHHHCCeEEEecccCCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence                  322      2445554 45678999999999987799999999743  444444443

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.88  E-value=1.5e-22  Score=176.17  Aligned_cols=182  Identities=16%  Similarity=0.230  Sum_probs=126.2

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++++ ++|+||+|.+|.+++.....+..++..+++|+++||||.|++||+|+||+++++  +++          
T Consensus       175 ~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~--~~~----------  241 (366)
T PRK01533        175 QFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHE--ELI----------  241 (366)
T ss_pred             HHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCH--HHH----------
Confidence            5667777766 567799999988764323333344556899999999999999999999999986  344          


Q ss_pred             hhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           82 ISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                          ..+.... .++.+...+ .+...+++  ..++.+..++.++++++.+.+.++.+ ++.. .+| +|.|+|      
T Consensus       242 ----~~l~~~~~~~~~~~~~q-~aa~~~l~--~~~~~~~~~~~~~~~r~~~~~~l~~~-g~~~-~~~-~~nf~~------  305 (366)
T PRK01533        242 ----EKLNVVRLPFNVSSLAQ-KAATIAFG--DDEFIEEIVRVNTEGLRQYESFCKEN-EIPF-YQS-QTNFIF------  305 (366)
T ss_pred             ----HHHHHhcCCCCcCHHHH-HHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHhC-CCcc-CCC-cCcEEE------
Confidence                3333222 233333343 44444443  35788888899999999999999887 5543 455 577899      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                         ++++        ++.+ +...|.++||.|++   |  .+|+||+++..+ +.+..++.|+++++..+
T Consensus       306 ---~~~~--------~~~~-~~~~l~~~GI~Vr~---~--~~~iRis~~~~~-~~~~l~~al~~~~~~~~  357 (366)
T PRK01533        306 ---LPVE--------NGGE-IYEACAHAGFIIRP---F--PNGVRITVGTRE-QNEGVISVLQQHFENKK  357 (366)
T ss_pred             ---EeCC--------CHHH-HHHHHHHCCcEEcc---C--CCceEEeCCCHH-HHHHHHHHHHHHHHhcc
Confidence               5443        1334 45666689999998   4  489999999654 45777888877766554

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.88  E-value=1.6e-21  Score=169.81  Aligned_cols=187  Identities=15%  Similarity=0.222  Sum_probs=129.2

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|++.|+ ++++||+||+|.++.+++. ..++..  ..+++|+++||||.|++||+|+||+++++  ++++         
T Consensus       179 ~l~~~~~-~~~~lI~DE~y~~~~~~~~-~~~~~~--~~~~~i~~~SfSK~~g~~GlRiG~~v~~~--~~~~---------  243 (369)
T PRK08153        179 AFIEALP-ETTLLVLDEAYCETAPAGA-APPIDT--DDPNVIRMRTFSKAYGLAGARVGYAIGAP--GTIK---------  243 (369)
T ss_pred             HHHHhCC-CCcEEEEeCchhhhcCccc-chhhhh--cCCCEEEEecchHhccCcchheeeeecCH--HHHH---------
Confidence            3445554 3899999999999987652 223321  34689999999999999999999999987  4443         


Q ss_pred             hhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           82 ISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                           .+.... .++.++..+ .+...+++  ..+++++.++.++++++.+.+.|++. ++.  ..|.+++|+|      
T Consensus       244 -----~l~~~~~~~~~s~~~q-~~~~~~l~--~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~--~~p~~~~f~~------  306 (369)
T PRK08153        244 -----AFDKVRNHFGMNRIAQ-AAALAALK--DQAYLAEVVGKIAAARDRIAAIARAN-GLT--PLPSATNFVA------  306 (369)
T ss_pred             -----HHHHhhcCCCCCHHHH-HHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHC-CCc--cCCCcCcEEE------
Confidence                 222211 233333333 44445553  35678899999999999999999887 443  3477899999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEE-CCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVL-PGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                         ++++...     .....+.+.|.++||.+. ||.. ...+|+|++++ ++++.+..++.|.+++....
T Consensus       307 ---~~~~~~~-----~~a~~l~~~l~~~Gi~v~~p~~~-~~~~~iRis~~-~~~~~~~~~~al~~~~~~~~  367 (369)
T PRK08153        307 ---IDCGRDG-----AFARAVLDGLIARDIFVRMPGVA-PLDRCIRVSCG-PDEELDLFAEALPEALEAAR  367 (369)
T ss_pred             ---EECCCCc-----ccHHHHHHHHHHCCeEEeeCCCC-CCCCeEEEecC-CHHHHHHHHHHHHHHHHHhh
Confidence               4443111     134455555667899995 6643 23579999999 56678899999988886544

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.88  E-value=1.6e-22  Score=174.98  Aligned_cols=179  Identities=18%  Similarity=0.235  Sum_probs=120.7

Q ss_pred             HHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhhh
Q 047983            3 IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSI   82 (233)
Q Consensus         3 i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~   82 (233)
                      |++.|++ +++||+||+|.+|....   .....+...+++|+++||||.||+||+|+||+++++  +++           
T Consensus       170 l~~~~~~-~~~vivDEay~~f~~~~---s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~--~~i-----------  232 (351)
T PRK01688        170 LLELTRG-KAIVVADEAYIEFCPQA---SLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANE--EVI-----------  232 (351)
T ss_pred             HHHhCCC-CcEEEEECchhhcCCCC---ChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCH--HHH-----------
Confidence            4444544 68999999999986321   112223446799999999999999999999999987  343           


Q ss_pred             hhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCCc
Q 047983           83 SLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDK  161 (233)
Q Consensus        83 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (233)
                         ..+.... .++.+...+..+. +.+.+...+++++.++.+.++++++.+.|++++++.. ..|.+++|+|       
T Consensus       233 ---~~l~~~~~~~~v~~~~~~~a~-~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~~ps~~nfi~-------  300 (351)
T PRK01688        233 ---NLLLKVIAPYPLSTPVADIAA-QALSPQGIAAMRERVAEINANRQWLIAALKEIPCVEQ-VFDSETNYIL-------  300 (351)
T ss_pred             ---HHHHhccCCCCCCHHHHHHHH-HHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCe-ECCCCCcEEE-------
Confidence               3333221 1233333332333 3444344567888889999999999999988866542 4577899999       


Q ss_pred             ccccccccccCCCCChHHHHHHHHhccCEEEECCccc-CCCCcEEEEeecCHHHHHHHHHHH
Q 047983          162 CLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITV-GLKDWLRITFAVEPSAFEIGLGRM  222 (233)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f-~~~~~~Rl~~~~~~~~l~~~~~~l  222 (233)
                        ++++        +..++.. .|.++||.|+++..| +.++|+|+|++.. ++.+..++.|
T Consensus       301 --~~~~--------~~~~l~~-~L~~~gi~vr~~~~~~~~~~~iRis~~~~-~e~~~l~~al  350 (351)
T PRK01688        301 --ARFT--------ASSAVFK-SLWDQGIILRDQNKQPGLSNCLRITIGTR-EECQRVIDAL  350 (351)
T ss_pred             --EEcC--------CHHHHHH-HHHHCCeEEEECCCcCCCCCeEEEeCCCH-HHHHHHHHhh
Confidence              5543        2444444 455789999987665 4478999999953 4445555444

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.88  E-value=1.2e-21  Score=169.64  Aligned_cols=179  Identities=20%  Similarity=0.286  Sum_probs=121.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +++.++|++++.++|+||+|.++.  +....++  ++..+++|+++||||.|++||+|+||+++++  +++         
T Consensus       168 ~~l~~l~~~~~~~~ivDe~y~~~~--~~~~~~~--~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~--~~~---------  232 (351)
T PRK14807        168 EDIIKIIEKSRGIVVVDEAYFEFY--GNTIVDV--INEFENLIVLRTLSKAFGLAGLRVGYAVANE--NIL---------  232 (351)
T ss_pred             HHHHHHHHhCCCEEEEeCcchhhc--ccchHHH--hhhCCCEEEEecchHhcccchhceeeeecCH--HHH---------
Confidence            468899999889999999999873  3222222  3445789999999999999999999999976  344         


Q ss_pred             hhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..+..... .+.+...| .++.++++.   .++++..+.++++++.+.+.|++++++..  .|.+|+|+|     
T Consensus       233 -----~~~~~~~~~~~~~~~~q-~~~~~~l~~---~~~~~~~~~~~~~r~~l~~~l~~~~g~~~--~~~~~~~~~-----  296 (351)
T PRK14807        233 -----KYLNLVKSPYNINSLSQ-VIALKVLRT---GVLKERVNYILNERERLIKELSKIPGIKV--YPSKTNFIL-----  296 (351)
T ss_pred             -----HHHHHccCCCCcCHHHH-HHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHhCCCcEE--CcCCccEEE-----
Confidence                 33332211 23333333 555555542   35666777888999999999988767653  355688999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCccc-CCCCcEEEEeecCHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITV-GLKDWLRITFAVEPSAFEIGLGRMKA  224 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f-~~~~~~Rl~~~~~~~~l~~~~~~l~~  224 (233)
                          ++++         +.+.+.+.|.++||.|.+++.+ +..+|+|++++.+++ .+..++.|++
T Consensus       297 ----i~~~---------~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~~~~~-~~~l~~~l~~  348 (351)
T PRK14807        297 ----VKFK---------DADYVYQGLLERGILVRDFSKVEGLEGALRITVSSCEA-NDYLINGLKE  348 (351)
T ss_pred             ----EEcC---------CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcCCHHH-HHHHHHHHHH
Confidence                5553         3445556666789999986543 446899999996432 2344444433

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.88  E-value=7.7e-22  Score=171.09  Aligned_cols=180  Identities=16%  Similarity=0.207  Sum_probs=126.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|+++|+++|+||+|.++.  +....++  ....+++++++||||.||+||+|+||+++++  .++         
T Consensus       178 ~~l~~l~~~~~~~li~De~y~~~~--~~~~~~~--~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~--~~~---------  242 (361)
T PRK00950        178 EDIRKILESTDALVFVDEAYVEFA--EYDYTPL--ALEYDNLIIGRTFSKVFGLAGLRIGYGFVPE--WLI---------  242 (361)
T ss_pred             HHHHHHHHHCCcEEEEECchhhhC--ccchHHH--HHhcCCEEEEEeehHhhcCchhhcchhcCCH--HHH---------
Confidence            368899999999999999999876  2222222  2344789999999999999999999999987  333         


Q ss_pred             hhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..+..... ++.+...+ .+....++  ..+++++.++.++++++.+.+.|+    +.  ..|.+++|+|     
T Consensus       243 -----~~~~~~~~~~~~~~~~~-~~a~~~l~--~~~~~~~~~~~~~~~r~~l~~~l~----~~--~~~~~~~~i~-----  303 (361)
T PRK00950        243 -----DYYMRAKTPFSLTRLSQ-AAAIAALS--DKEYIEKSIEHGIKSREYLYNELP----FK--VYPSEANFVL-----  303 (361)
T ss_pred             -----HHHHHhcCCCCCCHHHH-HHHHHHhc--CHHHHHHHHHHHHHHHHHHHhhcC----ee--ECCCcceEEE-----
Confidence                 33332222 22333333 33333333  246778888899999999888875    22  2466889999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                          ++++     +. ++.+++..++ ++||.+.||..|+.  ++++|++++. .++++++++.|++++
T Consensus       304 ----~~~~-----~~-~~~~~~~~l~-~~gv~v~~~~~f~~~~~~~lRis~~~-~~~~~~l~~~L~~il  360 (361)
T PRK00950        304 ----VDVT-----PM-TAKEFCEELL-KRGVIVRDCTSFRGLGDYYIRVSIGT-FEENERFLEILKEIV  360 (361)
T ss_pred             ----EECC-----CC-CHHHHHHHHH-HCCEEEeeCCccCCCCCCeEEEECCC-HHHHHHHHHHHHHHh
Confidence                5552     12 3555655555 67999999998864  5799999994 456788888887765

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=2.6e-21  Score=168.39  Aligned_cols=184  Identities=16%  Similarity=0.227  Sum_probs=126.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +++.++|+.++++||+||+|.+|.+++. ...+...+..+++|+++||||.|++||+|+||+++++  +++         
T Consensus       180 ~~l~~l~~~~~~~lI~DE~y~~~~~~~~-~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~--~~~---------  247 (368)
T PRK03317        180 DDVEAILDAAPGIVVVDEAYAEFRRSGT-PSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAP--AVV---------  247 (368)
T ss_pred             HHHHHHHHHCCceEEEeCCchhhcccCC-cCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCH--HHH---------
Confidence            3678888888999999999999877653 2222223445689999999999999999999999987  343         


Q ss_pred             hhhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..+.... .++.++..+ .+..+.++. . ++..+.++.++++++.+.+.|++. ++. +..|+|++++|     
T Consensus       248 -----~~l~~~~~~~~~s~~~~-~a~~~~l~~-~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~-----  312 (368)
T PRK03317        248 -----DALRLVRLPYHLSAVTQ-AAARAALRH-A-DELLASVAALRAERDRVVAWLREL-GLR-VAPSDANFVLF-----  312 (368)
T ss_pred             -----HHHHhcCCCCCCCHHHH-HHHHHHhhC-H-HHHHHHHHHHHHHHHHHHHHHHHC-CCE-eCCCCCcEEEE-----
Confidence                 3333221 233333333 343444432 2 334455667889999999999887 554 36788999888     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~  228 (233)
                          ..++         +...+.+.|.++||.|.+.   +..+|+|++++. .++++..++.|.+++..
T Consensus       313 ----~~~~---------~~~~~~~~l~~~Gv~v~~~---~~~~~iRi~~~~-~~~~~~~~~~l~~~~~~  364 (368)
T PRK03317        313 ----GRFA---------DRHAVWQGLLDRGVLIRDV---GIPGWLRVTIGT-PEENDAFLAALAEVLAT  364 (368)
T ss_pred             ----eccC---------CHHHHHHHHHHCCEEEEeC---CCCCeEEEecCC-HHHHHHHHHHHHHHHHH
Confidence                3332         2334455566789999874   346899999984 45678888888877654

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.87  E-value=2.6e-21  Score=166.93  Aligned_cols=185  Identities=17%  Similarity=0.266  Sum_probs=132.5

Q ss_pred             hHHHHHHHc--CcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKL--GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~--~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++++..  +.+||+||+|.+|..    ......+..++|+|++.||||.||++|+|+||+++++  +++        
T Consensus       166 ~l~~l~~~~~~~~~vVvDEAY~eF~~----~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~--~~i--------  231 (356)
T COG0079         166 ELRALLEALPEGGLVVIDEAYIEFSP----ESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANP--ELI--------  231 (356)
T ss_pred             HHHHHHHhCCCCcEEEEeCchhhcCC----chhhhhccCCCCEEEEEecHHhhhcchhceeeccCCH--HHH--------
Confidence            445555543  899999999999874    2222222356789999999999999999999999988  344        


Q ss_pred             hhhhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           80 HSISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                            ..+.... -++.+.+.+..+.+++   ...+++++..+.+.+.|+++.+.|+.++ ... ..|..+.|++    
T Consensus       232 ------~~l~~vr~p~~v~~~a~~aa~aal---~~~~~~~~~~~~~~~~r~rl~~~l~~~~-~~~-v~pS~aNFvl----  296 (356)
T COG0079         232 ------AALNKVRPPFNVSSPALAAAIAAL---RDADYLEESVERIREERERLYAALKALG-LFG-VFPSQANFVL----  296 (356)
T ss_pred             ------HHHHHhcCCCCCCHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHHHHHhCC-CCe-ecCCCCcEEE----
Confidence                  3343332 2444444443555554   2348999999999999999999999986 432 3566688998    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC-CCCcEEEEeecCHHHHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG-LKDWLRITFAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~  228 (233)
                           ++++.      .+ ...+.+.|.++||+|+....-+ .++|+|+++++.+++ +..++.|.+++..
T Consensus       297 -----v~~~~------~~-~~~l~~~L~~~giivR~~~~~~~~~~~lRitvgt~een-~~ll~AL~~~~~~  354 (356)
T COG0079         297 -----VRVPD------AE-AAALAEALLKKGILVRDCSSVGLLPGYLRITVGTPEEN-DRLLAALREVLKG  354 (356)
T ss_pred             -----EECCC------cc-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEeCCHHHH-HHHHHHHHHHHhc
Confidence                 44431      12 5567777888899999986522 368999999987776 7777777776653

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.86  E-value=6.1e-21  Score=164.98  Aligned_cols=186  Identities=18%  Similarity=0.262  Sum_probs=126.0

Q ss_pred             hHHHHHHHc-CcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKL-GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~-~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++.++++.+ ++++|+||+|.+|.  +....++  .+..+++|+++||||.|++||+|+||+++++  .+++.   +   
T Consensus       165 ~~~~l~~~~~~~~livDe~y~~~~--~~~~~~~--~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~--~~~~~---l---  232 (353)
T PRK05387        165 EIERILAANPDSVVVIDEAYVDFG--GESAIPL--IDRYPNLLVVQTFSKSRSLAGLRVGFAIGHP--ELIEA---L---  232 (353)
T ss_pred             HHHHHHHhCCCcEEEEeCcccccC--CcchHHH--HhhCCCEEEEEehhHhhcchhhhceeeecCH--HHHHH---H---
Confidence            567777765 99999999998863  3222222  2345789999999999999999999999876  34421   1   


Q ss_pred             hhhhHHhhhhh-hhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDY-LLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           .+.... ..++.+...+ .++...+.  ..++.++.++.+.++++.+.+.|+++ ++..  .|.+++|+|     
T Consensus       233 -----~~~~~~~~~~~~~~~~q-~~~~~~l~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~--~~~~~~~~~-----  296 (353)
T PRK05387        233 -----NRVKNSFNSYPLDRLAQ-AGAIAAIE--DEAYFEETRAKVIATRERLVEELEAL-GFEV--LPSKANFVF-----  296 (353)
T ss_pred             -----HHhhccCCCCCcCHHHH-HHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHC-CCeE--CCCcCcEEE-----
Confidence                 222211 1122333333 44444443  24567888999999999999999887 5542  466788999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                          ++++  .   . ++.++... |.++||.|.+.......+++|++++ +.++++.+++.|.+++.
T Consensus       297 ----~~~~--~---~-~~~~~~~~-l~~~gi~v~~~~~~~~~~~iRis~~-~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        297 ----ARHP--S---H-DAAELAAK-LRERGIIVRHFNKPRIDQFLRITIG-TDEEMEALVDALKEILA  352 (353)
T ss_pred             ----EECC--C---C-CHHHHHHH-HHHCCEEEEECCCCCCCCeEEEEeC-CHHHHHHHHHHHHHHhh
Confidence                5543  1   1 34555555 5678999986433223689999998 45778899988887654

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.86  E-value=3.1e-21  Score=167.19  Aligned_cols=179  Identities=19%  Similarity=0.261  Sum_probs=122.2

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      ++.++++..++++|+||+|.+|.+.+  ..+  .+...+++++++|||| +++||+|+||+++++  .++          
T Consensus       174 ~~~~i~~~~~~~ii~De~y~~~~~~~--~~~--~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~--~~i----------  236 (356)
T PRK04870        174 DVERIIEAAPGLVVVDEAYQPFAGDS--WLP--RLARFPNLLVMRTVSK-LGLAGLRLGYLAGHP--AWI----------  236 (356)
T ss_pred             HHHHHHHHCCCEEEEECCchhhcCcc--hHH--HHhhCCCEEEEecchh-hhhHHHhhhhhhCCH--HHH----------
Confidence            34455554488999999999976432  111  2344578999999999 799999999999987  343          


Q ss_pred             hhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           82 ISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                          ..+.... .++.+...+ .+...+++  ..+++++.++.++++++.+.+.|++++++.  ..|.+|+|+|      
T Consensus       237 ----~~~~~~~~~~~~~~~~q-~~a~~~l~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~--~~~~~~~~~~------  301 (356)
T PRK04870        237 ----AELDKVRPPYNVNVLTQ-ATALFALE--HVDVLDAQAAQLRAERTRLAAALAALPGVT--VFPSAANFIL------  301 (356)
T ss_pred             ----HHHHHccCCCcCCHHHH-HHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHhCCCcE--ECCCCCeEEE------
Confidence                3333221 122222333 33344443  234578888999999999999998887764  3466788999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAF  225 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~  225 (233)
                         ++++        ++.+ +.+.|+++||.|.||+.|+.  .+|+|++++.. ++.+..++.|.++
T Consensus       302 ---~~~~--------~~~~-~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~~~-~~~~~l~~al~~~  355 (356)
T PRK04870        302 ---VRVP--------DAAA-VFDGLKTRGVLVKNLSGMHPLLANCLRVTVGTP-EENAQFLAALKAA  355 (356)
T ss_pred             ---EECC--------CHHH-HHHHHHHCCEEEEECCCCCCCCCCeEEEeCCCH-HHHHHHHHHHHHh
Confidence               5553        1444 45667889999999999964  68999999963 3345555555543

>PLN02368 alanine transaminase

Probab=99.86  E-value=2.4e-21  Score=170.48  Aligned_cols=144  Identities=17%  Similarity=0.274  Sum_probs=103.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCC-cccccccc----C----CccCEEEEccCcccc-CCCCceEEEEEe---cCC
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNT-HFVPMGVF----G----SIVPVLTLGSISKRW-IVPGWRLGWLVT---SDP   67 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~-~~~~~~~~----~----~~~~~i~~~s~sK~~-~~~G~R~G~~~~---~~~   67 (233)
                      ++|+++|++||++||+||+|.++.|++. .+.++..+    +    ..+++|+++||||.| ++||||+||+++   ++ 
T Consensus       233 ~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~-  311 (407)
T PLN02368        233 REILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP-  311 (407)
T ss_pred             HHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCH-
Confidence            3689999999999999999999999764 34444322    2    245899999999998 899999999995   44 


Q ss_pred             CccccccchhhhhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhc---------HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 047983           68 NGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKT---------EEEFFSKITDILREAADICCDRLKEI  138 (233)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~  138 (233)
                       ++++.  +         .+.. ...++.+...| .++..+++..         ..++.+++++.+++|++.+.+.|+++
T Consensus       312 -~li~~--~---------~~~~-~~~~~~~~~~Q-~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~  377 (407)
T PLN02368        312 -KTVEE--I---------YKVA-SIALSPNVSGQ-IFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSC  377 (407)
T ss_pred             -HHHHH--H---------HHHh-cccCCCCcHHH-HHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence             34431  1         2222 12334444444 4444445432         12334567899999999999999998


Q ss_pred             CCcccccCCCccEEEEEecCCCccccccccc
Q 047983          139 PCITCPKKPEGSMFVMYCGSEDKCLLKLNYS  169 (233)
Q Consensus       139 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  169 (233)
                      +++.+ ..|+||||+|         ++++++
T Consensus       378 ~g~~~-~~P~Gafy~~---------~~i~lp  398 (407)
T PLN02368        378 KNVVC-NFTEGAMYSF---------PQIKLP  398 (407)
T ss_pred             CCeEe-CCCCeeeEec---------cCCCCC
Confidence            88875 7899999999         777665

>PRK03321 putative aminotransferase; Provisional

Probab=99.86  E-value=3.1e-21  Score=166.88  Aligned_cols=182  Identities=20%  Similarity=0.306  Sum_probs=121.6

Q ss_pred             hHHHHHHH--cCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKK--LGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~--~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++|+.  ++++||+||+|.++.+++..+.++...+..+++++++||||.|++||+|+||+++++  +++        
T Consensus       166 ~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~--~~~--------  235 (352)
T PRK03321        166 ELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHP--EVI--------  235 (352)
T ss_pred             HHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCH--HHH--------
Confidence            57777776  599999999999998876433344444556799999999999999999999999986  444        


Q ss_pred             hhhhhHHhhhhh-hhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           80 HSISLNMRMDDY-LLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                            ..+... ...+.+...+..+.+.+ . ..+.+.+.. +.+.++++.+.+.|++. ++..  .+.+|+|+|    
T Consensus       236 ------~~~~~~~~~~~~s~~~q~~a~~~l-~-~~~~~~~~~-~~~~~~r~~~~~~L~~~-~~~~--~~~~g~~i~----  299 (352)
T PRK03321        236 ------AALRKVAVPFSVNSLAQAAAIASL-A-AEDELLERV-DAVVAERDRVRAALRAA-GWTV--PPSQANFVW----  299 (352)
T ss_pred             ------HHHHHhcCCCCCCHHHHHHHHHHh-c-CHHHHHHHH-HHHHHHHHHHHHHHHHC-CCcc--CCCCCCEEE----
Confidence                  333322 12333444443444444 2 233444444 44456667888999886 5542  345689999    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                           ++++  .     ++.++.. .|+++||.|.|   |+ .+++||+++. .++.+++++.|.+++.
T Consensus       300 -----i~l~--~-----~~~~~~~-~l~~~gI~v~~---~~-~~~iRi~~~~-~~~~~~~~~al~~~~~  350 (352)
T PRK03321        300 -----LPLG--E-----RTADFAA-AAAEAGVVVRP---FA-GEGVRVTIGA-PEENDAFLRAARAWRA  350 (352)
T ss_pred             -----EeCC--C-----CHHHHHH-HHHHCCEEEEc---cC-CCcEEEeeCC-HHHHHHHHHHHHHHhc
Confidence                 5442  1     2444554 45788999987   43 4579999974 4456788888877653

>PRK09105 putative aminotransferase; Provisional

Probab=99.86  E-value=1.1e-20  Score=164.73  Aligned_cols=180  Identities=15%  Similarity=0.232  Sum_probs=118.1

Q ss_pred             hHHHHHH--HcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTK--KLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~--~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++++  +++++||+||+|.+|...   +......+..+++++++||||.||++|+|+||+++++  +++        
T Consensus       186 ~l~~l~~~~~~~~~lIvDEaY~~f~~~---~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~--~~i--------  252 (370)
T PRK09105        186 DIEWLLANKPAGSVLLVDEAYIHFSDA---PSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARP--DLL--------  252 (370)
T ss_pred             HHHHHHHhCCCCcEEEEECchHHhccC---cchHHHHhhCCCEEEEecccHhhcCCccceeeeecCH--HHH--------
Confidence            3444443  348999999999887532   1112222446799999999999999999999999987  333        


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                            ..+......+.+...+.++.+.+ .  ..+++++.++.++++++.+.+.|+++ ++.. .+|+|+|| |     
T Consensus       253 ------~~l~~~~~~~~~~~~~~aa~~~L-~--~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~-~~~~~~f~-~-----  315 (370)
T PRK09105        253 ------AKLARFGHNPLPVPAAAAGLASL-R--DPKLVPQRRAENAAVREDTIAWLKKK-GYKC-TPSQANCF-M-----  315 (370)
T ss_pred             ------HHHHhcCCCCcCHHHHHHHHHHH-h--CHHHHHHHHHHHHHHHHHHHHHHHHC-CCCc-CCCCCcEE-E-----
Confidence                  33333311222222222444443 2  25688999999999999999999987 5553 56777766 5     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-CCcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-KDWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                          ++++  .     ++.++...++ ++||.|  |..|+. ++|+|++++. +++.+..++.|.+++
T Consensus       316 ----~~~~--~-----~~~~l~~~L~-~~gI~v--~~~~~~~~~~~Ris~~~-~~~~~~l~~al~~~~  368 (370)
T PRK09105        316 ----VDVK--R-----PAKAVADAMA-KQGVFI--GRSWPIWPNWVRVTVGS-EEEMAAFRSAFAKVM  368 (370)
T ss_pred             ----EeCC--C-----CHHHHHHHHH-HCCcEE--ecCCCCCCCeEEEEcCC-HHHHHHHHHHHHHHh
Confidence                3332  1     3556666655 569998  445643 6899999996 444566666665544

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.85  E-value=9.1e-21  Score=164.23  Aligned_cols=181  Identities=14%  Similarity=0.141  Sum_probs=120.1

Q ss_pred             hHHHHHHHc-CcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKL-GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~-~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++.++++.. +++||+||+|.+|.... ....+  ....+++|+++||||.|++||+|+||+++++  +++         
T Consensus       168 ~l~~l~~~~~~~~vivDeay~~~~~~~-s~~~~--~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~--~~~---------  233 (354)
T PRK04635        168 DIEQLIEMTPDAIVVVDEAYIEFCPEY-SVADL--LASYPNLVVLRTLSKAFALAGARCGFTLANE--ELI---------  233 (354)
T ss_pred             HHHHHHHhCCCcEEEEeCchHhhccCc-chHHH--HhhCCCEEEEechHHHhhhhHHHHhhhhCCH--HHH---------
Confidence            456666553 69999999999986321 11111  2345789999999999999999999999987  343         


Q ss_pred             hhhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..+.... .++.+.+.+..+++. +.+...+++++.++.++++++.+.+.|++++++.. .+| +|.|+|     
T Consensus       234 -----~~l~~~~~~~~~~~~~~~~a~~~-l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~~~-~g~f~~-----  300 (354)
T PRK04635        234 -----EILMRVIAPYPVPLPVSEIATQA-LSEAGLARMKFQVLDLNAQGARLQAALSMYGGAKV-LEG-NGNYVL-----  300 (354)
T ss_pred             -----HHHHhhcCCCCCCHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCceE-CCC-CCcEEE-----
Confidence                 3332211 123333333244344 43344456778888999999999999998865553 455 467889     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMK  223 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~  223 (233)
                          ++++        +.. .+.++|+++||.|++++.++..+|+|+|++. .++++..++.|+
T Consensus       301 ----~~~~--------~~~-~~~~~l~~~gv~v~~~~~~~~~~~lRis~~~-~e~~~~l~~al~  350 (354)
T PRK04635        301 ----AKFD--------DVD-AVFKALWDAGIVARAYKDPRLANCIRFSFSN-RAETDKLIGLIR  350 (354)
T ss_pred             ----EECC--------CHH-HHHHHHHHCCEEEEECCCCCCCCeEEEEeCC-HHHHHHHHHHHH
Confidence                5443        133 4456777899999976554456899999985 444555555553

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.85  E-value=2.6e-20  Score=160.30  Aligned_cols=173  Identities=19%  Similarity=0.271  Sum_probs=117.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      ++.+++ +++++||+||+|.+|.  +....++  +...+++|+++||||.|++||+|+||+++++  +++          
T Consensus       159 ~l~~l~-~~~~~ii~DE~Y~~f~--~~~~~~~--~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~--~~~----------  221 (335)
T PRK14808        159 EIERIL-KTGAFVALDEAYYEFH--GESYVDL--LKKYENLAVIRTFSKAFSLAAQRIGYVVSSE--KFI----------  221 (335)
T ss_pred             HHHHHH-hcCCEEEEECchhhhc--CCchHHH--HHhCCCEEEEEechhhccCcccceEEEEeCH--HHH----------
Confidence            566777 5899999999999974  2222221  2345789999999999999999999999987  344          


Q ss_pred             hhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           82 ISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                          ..+.... .++.+...+ .+....++ . .++..+.++.+.++++.+.+.|+++ ++.. .+| .|.|+|      
T Consensus       222 ----~~l~~~~~~~~~~~~~q-~a~~~~l~-~-~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~-~~~-~g~f~~------  285 (335)
T PRK14808        222 ----DAYNRVRLPFNVSYVSQ-MFAKVALD-H-REIFEERTKFIVEERERMKSALREM-GYRI-TDS-RGNFVF------  285 (335)
T ss_pred             ----HHHHHhcCCCCCCHHHH-HHHHHHHh-C-HHHHHHHHHHHHHHHHHHHHHHHHC-CCEE-CCC-CCeEEE------
Confidence                3332222 234444444 33344443 2 3466777888888899999999887 4543 456 466779      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMK  223 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~  223 (233)
                         ++++.       .+...+...|.++||.|++   |  .+++|++++..+ +.+..++.|.
T Consensus       286 ---~~l~~-------~~~~~~~~~l~~~Gi~V~~---~--~~~~Risi~~~~-~~~~~~~~l~  332 (335)
T PRK14808        286 ---IFMEK-------EEKERLLEHLRAKNIAVRS---F--REGVRITIGKRE-ENDMILKELE  332 (335)
T ss_pred             ---EeCCC-------ccHHHHHHHHHHCCeEEEE---C--CCCeEEecCCHH-HHHHHHHHHH
Confidence               55542       1335566777788999985   3  379999998654 3455555554

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.85  E-value=1.8e-20  Score=161.61  Aligned_cols=179  Identities=20%  Similarity=0.301  Sum_probs=124.7

Q ss_pred             hHHHHHHHc--CcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKL--GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~--~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++.++|+.+  |+++|+||+|.++...+ .+.+.  ....+++++++|+||.|+++|+|+||+++++  +++        
T Consensus       163 ~~~~l~~~~~~~~~ii~D~~y~~~~~~~-~~~~~--~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~--~~~--------  229 (346)
T TIGR01141       163 DIEAVLERTPEDALVVVDEAYGEFSGEP-STLPL--LAEYPNLIVLRTLSKAFGLAGLRIGYAIANA--EII--------  229 (346)
T ss_pred             HHHHHHHhCCCCcEEEEECchhhhcCCc-cHHHH--HhhCCCEEEEehhhHhhhchhhhceeeecCH--HHH--------
Confidence            566677666  99999999999876543 21122  2234578999999999999999999999976  343        


Q ss_pred             hhhhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           80 HSISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                            ..+.... .++.++..+ .+...+++..  .+..+.++.++++++.+.+.|++++++..  .|.+|+|+|    
T Consensus       230 ------~~~~~~~~~~~~~~~~~-~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~--~~~~g~~~~----  294 (346)
T TIGR01141       230 ------DALNKVRAPFNLSRLAQ-AAAIAALRDD--DFIEKTVEEINAERERLYDGLKKLPGLEV--YPSDANFVL----  294 (346)
T ss_pred             ------HHHHhccCCCCCCHHHH-HHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhcCCCEE--CCCcCCEEE----
Confidence                  3333222 233333343 3334444332  37888999999999999999988766653  455788999    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-CCcEEEEeecCHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-KDWLRITFAVEPSAFEIGLGRM  222 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~Rl~~~~~~~~l~~~~~~l  222 (233)
                           +.++  .     ++.++.. .|.++||.+.||+.|+. .+++|++++ ++++++.+++.|
T Consensus       295 -----~~~~--~-----~~~~~~~-~L~~~gI~v~~g~~f~~~~~~iRls~~-~~~~i~~~~~~l  345 (346)
T TIGR01141       295 -----IRFP--R-----DADALFE-ALLEKGIIVRDLNSYPGLPNCLRITVG-TREENDRFLAAL  345 (346)
T ss_pred             -----EecC--C-----CHHHHHH-HHHHCCeEEEeCCCcCCCCCeEEEecC-CHHHHHHHHHHh
Confidence                 5443  1     2455555 45578999999998865 789999988 566677777665

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.84  E-value=2.3e-20  Score=160.72  Aligned_cols=175  Identities=19%  Similarity=0.230  Sum_probs=116.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.+++ +++++||+||+|.+|..  ....++  ....+++|+++||||.|++||+|+||+++++  +++         
T Consensus       160 ~~l~~i~-~~~~~ii~De~y~~~~~--~~~~~~--~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~--~~i---------  223 (337)
T PRK03967        160 EEILKVL-ETGKPVVLDEAYAEFSG--KSLIGL--IDEYPNLILLRTFSKAFGLAGIRAGYAIANE--EII---------  223 (337)
T ss_pred             HHHHHHH-hcCCEEEEECchhhhcc--cchHHH--HhhCCCEEEEecchHhhcchhhhheeeecCH--HHH---------
Confidence            3677888 47999999999999862  222121  2345789999999999999999999999987  344         


Q ss_pred             hhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..+..... ++.+...+ .++..+++ . .++..+.++.+.++++.+.+.|.+.      ..|.+++|+|     
T Consensus       224 -----~~~~~~~~~~~~~~~~q-~~~~~~l~-~-~~~~~~~~~~~~~~r~~l~~~L~~~------~~~~~~~~~~-----  284 (337)
T PRK03967        224 -----DALYRIKPPFSLNILTM-KIVRLALD-H-YDLIEERIDYIIKERERVRRELGEY------AYPSDANFLL-----  284 (337)
T ss_pred             -----HHHHhhcCCCCCCHHHH-HHHHHHHh-C-HHHHHHHHHHHHHHHHHHHHHhccC------cCCCCCcEEE-----
Confidence                 33333222 23222333 55555554 2 3356666666777888888888663      2467899999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                          ++++             +.+.|.++||.|+++.. ...+|+|++++.+ ++.++.++.|.++.+.+
T Consensus       285 ----~~~~-------------~~~~l~~~gi~v~~~~~-~~~~~~Ri~~~~~-~~~~~l~~~l~~~~~~~  335 (337)
T PRK03967        285 ----LKLD-------------AYDYLLENGIVVRKLSG-RLEGHIRVTVGKR-EENDEFIKALKEIKEGY  335 (337)
T ss_pred             ----EhHH-------------HHHHHHHCCEEEEeCCC-CCCCeEEEecCCH-HHHHHHHHHHHHHHHhc
Confidence                4432             24555577999998753 2367999999963 33356666665555443

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.84  E-value=8.4e-20  Score=157.61  Aligned_cols=182  Identities=17%  Similarity=0.211  Sum_probs=119.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|..+..+.....+.....  .+ +++.|+||  +++|+|+||+++++  ++++.   +   
T Consensus       158 ~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~--~d-ivv~s~SK--alaG~r~G~v~~~~--~li~~---l---  224 (346)
T TIGR03576       158 KRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLG--AD-LVVTSTDK--LMDGPRGGLLAGRK--ELVDK---I---  224 (346)
T ss_pred             HHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcC--Cc-EEEeccch--hccccceEEEEeCH--HHHHH---H---
Confidence            3688999999999999999998764311111222222  22 66779999  67899999999987  45431   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                           .+......++.+++.+.++++++ +..   ..+..++.+++|++.+.+.++.+   .. .++. +.|+|      
T Consensus       225 -----~~~~~~~~~s~~~~~~~aa~~aL-~~~---~~~~~~~~l~~r~~~~~~~l~~~---~~-~~~~-~~f~~------  284 (346)
T TIGR03576       225 -----KSVGEQFGLEAQAPLLAAVVRAL-EEF---ELSRIRDAFKRKEEVYLRLFDKL---NV-ERTP-TGFVI------  284 (346)
T ss_pred             -----HHhhcCcccCccHHHHHHHHHHH-hhc---cHHHHHHHHHHHHHHHHHHHHhC---CC-CcCC-CeEEE------
Confidence                 22222222333344433444444 221   13567889999999998888754   22 2333 34899      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccC-CCCcEEEEeecCHH---HHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG-LKDWLRITFAVEPS---AFEIGLGRMKA  224 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~Rl~~~~~~~---~l~~~~~~l~~  224 (233)
                         ++++.      .++.+++.++|+++||.++||+.|. .++|+|+|++.+++   +.+..++.|++
T Consensus       285 ---~~~~~------~~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~~~~~~~~~~~~~~al~~  343 (346)
T TIGR03576       285 ---KGVEE------EKLIEIGLDLLRNYGIITITAVGMPGASKTLRFDLAAKDAERIGDDYLVEAVKD  343 (346)
T ss_pred             ---EeCCC------CCHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEEEecChHHhcCHHHHHHHHHh
Confidence               54431      1357899999999999999999985 37899999998664   44555555543

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.83  E-value=6.5e-19  Score=151.00  Aligned_cols=190  Identities=29%  Similarity=0.489  Sum_probs=140.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|+++|+++|+|++|+.+.+.+.....+...+..+.+++++|++|.++.+|.|+||++++++ .++          
T Consensus       156 ~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~-~~~----------  224 (350)
T cd00609         156 ELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPE-ELL----------  224 (350)
T ss_pred             HHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHH-HHH----------
Confidence            466899999999999999999887764432223345556789999999998889999999999773 233          


Q ss_pred             hhhHHhhhhhhhh-ccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           82 ISLNMRMDDYLLL-SESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        82 ~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                          +.+...... ...++... .++..+++... ++.++.++.++++++++.+.|++.+.... ..+.+|+++|     
T Consensus       225 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~g~~~~-----  293 (350)
T cd00609         225 ----ERLKKLLPYTTSGPSTLSQAAAAAALDDGE-EHLEELRERYRRRRDALLEALKELGPLVV-VKPSGGFFLW-----  293 (350)
T ss_pred             ----HHHHHHHHhcccCCChHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCCCccEEEE-----
Confidence                333322222 12223333 55555554333 78889999999999999999998755542 4678899999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC--CCCcEEEEeecCHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG--LKDWLRITFAVEPSAFEIGLGRMK  223 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--~~~~~Rl~~~~~~~~l~~~~~~l~  223 (233)
                          ++++..      .+...+.++|+++||.+.++..|.  ...++|++++...++++.++++|+
T Consensus       294 ----~~~~~~------~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~~~~i~~~~~al~  349 (350)
T cd00609         294 ----LDLPEG------DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPEEELEEALERLA  349 (350)
T ss_pred             ----EecCCC------ChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCCHHHHHHHHHHhh
Confidence                554321      257788889999999999998887  578999999987888888888775

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PLN02822 serine palmitoyltransferase

Probab=99.79  E-value=4e-18  Score=153.07  Aligned_cols=200  Identities=17%  Similarity=0.129  Sum_probs=134.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCC--ccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNT--HFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~--~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++|++||+++|+||+|+...++..  .......+...+..|+++||||.|+.+|   ||+++++  .+++.   . 
T Consensus       265 ~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G---G~i~g~~--~ii~~---~-  335 (481)
T PLN02822        265 DEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG---GFCTGSA--RVVDH---Q-  335 (481)
T ss_pred             HHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC---eEEEcCH--HHHHH---H-
Confidence            4799999999999999999997777632  2212222222355689999999999999   9999987  34421   1 


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                             ........++.+.+++.  ++++++ + ..++ ..+.++.++++++++.+.|++++++.. ..+.++++++  
T Consensus       336 -------~~~~~~~~fsa~lPp~~~~Aa~~aL-~-~l~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~-~~~~~spi~~--  402 (481)
T PLN02822        336 -------RLSSSGYVFSASLPPYLASAAITAI-D-VLED-NPSVLAKLKENIALLHKGLSDIPGLSI-GSNTLSPIVF--  402 (481)
T ss_pred             -------HhcCCceeeccccCHHHHHHHHHHH-H-HHHh-CHHHHHHHHHHHHHHHHHHHhcCCccc-CCCCCCCEEE--
Confidence                   11122223444433332  444444 2 2222 257888999999999999998766664 5667889998  


Q ss_pred             cCCCcccccccccccCCCC-C---hHHHHHHHHhccCEEEECC--cccCC---CCcEEEEee--cCHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGIN-S---DTEFALKLAKEESIIVLPG--ITVGL---KDWLRITFA--VEPSAFEIGLGRMKAF  225 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~-~---~~~~~~~ll~~~gi~v~pg--~~f~~---~~~~Rl~~~--~~~~~l~~~~~~l~~~  225 (233)
                             +.++.... ... +   ..+++.++++++||.+.|+  ..|+.   ..++|++++  .+++++++++++|+++
T Consensus       403 -------l~l~~~~~-~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~  474 (481)
T PLN02822        403 -------LHLEKSTG-SAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRV  474 (481)
T ss_pred             -------EEeCCCcc-cccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence                   54432100 000 1   2467778887899999986  44432   357999877  4899999999999998


Q ss_pred             HHHHh
Q 047983          226 YYRHA  230 (233)
Q Consensus       226 l~~~~  230 (233)
                      +...-
T Consensus       475 ~~~~~  479 (481)
T PLN02822        475 AASVL  479 (481)
T ss_pred             HHHHh
Confidence            87653

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.78  E-value=1.1e-18  Score=146.82  Aligned_cols=212  Identities=22%  Similarity=0.280  Sum_probs=151.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCC-cccccccc----C----CccCEEEEccCcccc-CCCCceEEEEEecCCCcc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNT-HFVPMGVF----G----SIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGI   70 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~-~~~~~~~~----~----~~~~~i~~~s~sK~~-~~~G~R~G~~~~~~~~~~   70 (233)
                      |+|+.+|.++++.|+.||+|++.+|.+. .+.+++.+    .    +...++.++|.||.+ |-+|.|-||+-.-+...-
T Consensus       238 e~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~pr  317 (475)
T KOG0258|consen  238 EGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPR  317 (475)
T ss_pred             HHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChh
Confidence            4789999999999999999999999864 66666543    2    123479999999965 669999999877654333


Q ss_pred             ccccchhhhhhhhhHHhhhhhhh--hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC
Q 047983           71 LQDLGVAFFHSISLNMRMDDYLL--LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE  148 (233)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  148 (233)
                      +.+ .+.+..++.+|........  ..++++.+.  -..+  +......+.+...+++|.+.+.+.+++++++.+ .+++
T Consensus       318 v~~-qi~Kl~si~lc~~V~GQ~~vdl~VnPP~Pg--d~Sy--~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~c-n~~q  391 (475)
T KOG0258|consen  318 VKQ-QIKKLASIKLCPQVSGQKLVDLVVNPPKPG--DPSY--DLFSSEKDGILSSLRSRAKLTEDAFNSLEGISC-NPVQ  391 (475)
T ss_pred             HHH-HHHHHHhhhhcCCccchhhhceecCCCCCC--Ccch--hhhhhhhHhHHHHHHHHhHHHHHHHhhcCceee-ccCc
Confidence            322 2333333333322221111  112222211  1111  112355677888999999999999999999998 8999


Q ss_pred             ccEEEEEecCCCccccccccccc-------CCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEEeecCHHHHHHH
Q 047983          149 GSMFVMYCGSEDKCLLKLNYSLL-------EGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRITFAVEPSAFEIG  218 (233)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~~~~~~~~l~~~  218 (233)
                      |+||++         .++.+|..       .++.+|.-++.++|++.||.++||++||.   .-++|.++....  + +.
T Consensus       392 GAMY~f---------P~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp~~--~-~~  459 (475)
T KOG0258|consen  392 GAMYLF---------PQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILPPG--L-EI  459 (475)
T ss_pred             cceeec---------ccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecCch--h-HH
Confidence            999999         87777642       36678999999999999999999999997   346999998755  5 88


Q ss_pred             HHHHHHHHHHHh
Q 047983          219 LGRMKAFYYRHA  230 (233)
Q Consensus       219 ~~~l~~~l~~~~  230 (233)
                      +++++++..+..
T Consensus       460 i~~~~~fH~~f~  471 (475)
T KOG0258|consen  460 IEKFKKFHAEFM  471 (475)
T ss_pred             HHHHHHHHHHHH
Confidence            888888877654

>PLN02483 serine palmitoyltransferase

Probab=99.78  E-value=6.6e-18  Score=151.99  Aligned_cols=192  Identities=14%  Similarity=0.112  Sum_probs=125.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccC--CCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFG--NTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++|++||++||+||+|+...++  |....+...+++.+..|+++||||.|+++|   ||+++++  +++       
T Consensus       260 ~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~G---G~i~~~~--~li-------  327 (489)
T PLN02483        260 PEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCG---GYIAGSK--ELI-------  327 (489)
T ss_pred             HHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccCc---eEEEcCH--HHH-------
Confidence            37899999999999999999854433  222233334445567899999999999988   9999887  344       


Q ss_pred             hhhhhhHHhhhhh---hhhccCcchH-H-HHHHHH---hhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcc
Q 047983           79 FHSISLNMRMDDY---LLLSESVYTT-V-GAVPQI---LEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGS  150 (233)
Q Consensus        79 ~~~~~~~~~~~~~---~~~~~~~~~~-~-~~~~~~---l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g  150 (233)
                             ..++..   ...+.+.++. . .+++++   ......++..+.++.+++|++++.+.|+++ ++.. ..+.++
T Consensus       328 -------~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-G~~v-~~~~~s  398 (489)
T PLN02483        328 -------QYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GFEV-LGDNDS  398 (489)
T ss_pred             -------HHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-CCcc-cCCCCC
Confidence                   333322   1112111222 1 222222   212222455566889999999999999987 4543 445555


Q ss_pred             EEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----CCcEEEEeec--CHHHHHHHHHHHHH
Q 047983          151 MFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFAV--EPSAFEIGLGRMKA  224 (233)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~Rl~~~~--~~~~l~~~~~~l~~  224 (233)
                      +.+|         +.+..+.     +..++..+++ ++||.+.| ..|+.    .+++|++++.  +.+++++++++|.+
T Consensus       399 p~~~---------l~l~~~~-----~~~~~~~~Ll-~~GI~v~~-~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~  462 (489)
T PLN02483        399 PVMP---------IMLYNPA-----KIPAFSRECL-KQNVAVVV-VGFPATPLLLARARICISASHSREDLIKALEVISE  462 (489)
T ss_pred             CEEE---------EEECCHH-----HHHHHHHHHH-HCCcEEee-eCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            6666         3332211     1345666655 57999997 56632    3789999985  89999999999999


Q ss_pred             HHHHH
Q 047983          225 FYYRH  229 (233)
Q Consensus       225 ~l~~~  229 (233)
                      +++..
T Consensus       463 ~~~~~  467 (489)
T PLN02483        463 VGDLV  467 (489)
T ss_pred             HHHHh
Confidence            88655

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.77  E-value=5e-18  Score=150.56  Aligned_cols=196  Identities=16%  Similarity=0.121  Sum_probs=124.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||+++|+||+|+++.+++. ...+   +..+.++.+.||||.++ +|+|+||+++++  ++++.  +    
T Consensus       223 ~~l~~l~~~~~~~lI~Dev~~g~g~~g~-~~~~---~~~~~~pdi~s~sK~l~-~G~rig~v~~~~--~~~~~--~----  289 (425)
T PRK08088        223 QRLRALCDEHGIMLIADEVQTGAGRTGT-LFAM---EQMGVAADLTTFAKSIA-GGFPLAGVTGRA--EVMDA--I----  289 (425)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCcCcc-hhHH---hhcCCCCCEEEEecccc-CCCcceeeEecH--HHHhh--c----
Confidence            3789999999999999999998766542 1121   11223355899999976 899999999987  44432  1    


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           .......+++.++..+ ++..++++.. .+++++..++..++.++.+.+.++..+.+.. ..+. |+++|     
T Consensus       290 -----~~~~~~~t~~~~~~~~-~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-v~g~-G~~~~-----  356 (425)
T PRK08088        290 -----APGGLGGTYAGNPIAC-AAALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKHPEIGD-VRGL-GAMIA-----  356 (425)
T ss_pred             -----CCCCCCCCCCcCHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEE-Eecc-ceEEE-----
Confidence                 1112222333334443 4444444433 3456677776666666666555555654322 2222 88899     


Q ss_pred             Ccccccccccc---cCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSL---LEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       160 ~~~~~~~~~~~---~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                          +.+..+.   .+.. .....+.+.+.++||.+.|+..|+  +.+|++++.  +++++++++++|.+.+++.
T Consensus       357 ----l~l~~~~~~~~p~~-~~~~~l~~~~~~~Gv~~~~~~~~~--~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~  424 (425)
T PRK08088        357 ----IELFEDGDHSKPNA-KLTAQIVARARDKGLILLSCGPYY--NVLRILVPLTIEDAQIRQGLEIIAQCFDEA  424 (425)
T ss_pred             ----EEEecCCCCCCCCH-HHHHHHHHHHHhCCCEEecCCCCC--CEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence                5552110   0000 123445555667899998866554  789999993  7999999999999998754

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.76  E-value=1.2e-17  Score=147.21  Aligned_cols=188  Identities=15%  Similarity=0.100  Sum_probs=120.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccc--cccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPM--GVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~--~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++|++||+++|+||+|+++.++|.. .+.  ..+.++     +.||||.++ +|+|+||+++++  ++++.  +  
T Consensus       208 ~~l~~l~~~~g~~lI~DEv~~g~g~~g~~-~~~~~~~~~pd-----i~s~sK~l~-~G~rig~vv~~~--~i~~~--l--  274 (403)
T PRK05093        208 QGLRELCDQHNALLIFDEVQTGMGRTGDL-FAYMHYGVTPD-----ILTSAKALG-GGFPIGAMLTTA--EIASH--F--  274 (403)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCCCCccc-hhhhhcCCCCC-----EEEeccccc-CCcceEEEEEcH--HHHhh--c--
Confidence            37899999999999999999998777642 222  122222     569999988 899999999987  44432  1  


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC-Ccccc-cCCCccEEEEEe
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP-CITCP-KKPEGSMFVMYC  156 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~-~~~~~g~~~~~~  156 (233)
                             .......+++.++..+.++.+.+ +.. .  -.+.++.++++++.+.+.|++++ ....+ ..+.+|+++|  
T Consensus       275 -------~~~~~~~t~~~~~~~~~aa~a~L-~~~-~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~--  341 (403)
T PRK05093        275 -------KVGTHGSTYGGNPLACAVAEAVF-DII-N--TPEVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIG--  341 (403)
T ss_pred             -------CCCCCCCCCCCCHHHHHHHHHHH-HHH-h--hccHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEE--
Confidence                   11111123333444443334433 211 1  13456788889999999998742 11111 3345689999  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                             +.++...   ..++.+++.+++ ++||.+.|+.    .+++|++++  .+++++++++++|.+++.+.
T Consensus       342 -------~~l~~~~---~~~~~~~~~~l~-~~Gv~v~~~g----~~~lRl~~~~~~~~~~i~~~~~~l~~~l~~~  401 (403)
T PRK05093        342 -------AELKPQY---KGRARDFLNAAA-EEGVMVLVAG----PDVLRFAPSLVIEEADIDEGLARFEKAVAKV  401 (403)
T ss_pred             -------EEecCcc---hhHHHHHHHHHH-HCCeEEecCC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence                   5543210   012455665555 5799999843    479999655  48999999999999998754

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.76  E-value=2e-17  Score=145.10  Aligned_cols=187  Identities=14%  Similarity=0.155  Sum_probs=113.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||++||+||+|++|.+++. ..++...+..++   +.||||.++ +|+|+||+++++  ++++.   +   
T Consensus       206 ~~l~~l~~~~~~~lI~DE~~~g~g~~g~-~~~~~~~~~~pd---i~t~sK~~~-~G~rig~~~~~~--~~~~~---~---  272 (396)
T PRK02627        206 QALRELCDENGILLILDEVQTGMGRTGK-LFAYQHYGIEPD---IMTLAKGLG-GGVPIGAVLAKE--KVADV---F---  272 (396)
T ss_pred             HHHHHHHHHcCCEEEEechhcCCCccCc-eeeehhcCCCCC---EEEEcchhh-CCcccEEEEEcH--HHHhc---c---
Confidence            4789999999999999999999876653 222222222223   347999988 899999999987  44431   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           .......+++.++..+.++.+. ++.. .+++.+..++.....++.+.+.+.+++.+.. . +..|.++|     
T Consensus       273 -----~~~~~~~t~~~~~~~~~aa~~~-l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~-~~~g~~~~-----  339 (396)
T PRK02627        273 -----TPGDHGSTFGGNPLACAAALAV-IEIIEEEGLLENAAEVGEYLRAKLRELLEKYPGIKE-V-RGLGLMIG-----  339 (396)
T ss_pred             -----CCCCCCCCCCCCHHHHHHHHHH-HHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCeee-e-ccCcEEEE-----
Confidence                 1111223344444444333333 3221 2233344444444444444444433433321 2 23578888     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                          ++++  .     +..+++.+++ ++||.+.|+.    .+++|++++  .+++++++++++|.+++++.
T Consensus       340 ----i~~~--~-----~~~~~~~~l~-~~Gv~v~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~~  395 (396)
T PRK02627        340 ----IELD--R-----PAAEIVKKAL-EKGLLINVTG----DNVLRLLPPLIISKEEIDEAVDRLEEVLKEL  395 (396)
T ss_pred             ----EEec--C-----cHHHHHHHHH-HCCeEEeecC----CCEEEEECCcccCHHHHHHHHHHHHHHHHhh
Confidence                5542  1     2556666655 4599999964    378999875  48999999999999988653

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.76  E-value=1.5e-17  Score=143.73  Aligned_cols=186  Identities=16%  Similarity=0.134  Sum_probs=120.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCc--cccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTH--FVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~--~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++|+++|++||+||+|..+.++...  ..+...+.+++++|+++|+||.|+.+|   ||+++++  ++++.  +  
T Consensus       166 ~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g---G~~~~~~--~~~~~--~--  236 (360)
T TIGR00858       166 PQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYG---AYVAGSQ--ALIDY--L--  236 (360)
T ss_pred             HHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccC---cEEEcCH--HHHHH--H--
Confidence            47899999999999999999976655321  222333444578999999999999888   9999876  33321  1  


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                             .........+.+.++.. .+..+.++  ...+.+..++.++++++++.+.|+++ ++.. . +.++.++|   
T Consensus       237 -------~~~~~~~~~~~~~~~~~~~a~~~al~--~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~-~-~~~~~~~~---  301 (360)
T TIGR00858       237 -------INRARTLIFSTALPPAVAAAALAALE--LIQEEPWRREKLLALIARLRAGLEAL-GFTL-M-PSCTPIVP---  301 (360)
T ss_pred             -------HHhCccceecCCCCHHHHHHHHHHHH--HHhhCHHHHHHHHHHHHHHHHHHHHc-CCcc-C-CCCCCEEE---
Confidence                   11111111122222222 22222221  12234567899999999999999887 4443 3 45677888   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEEeec--CHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRITFAV--EPSAFEIGLGRM  222 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~~~~--~~~~l~~~~~~l  222 (233)
                            +.++...     ++.++. +.|.++||.+.++..++.   .+++|+++..  +++++++++++|
T Consensus       302 ------~~~~~~~-----~~~~~~-~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l  359 (360)
T TIGR00858       302 ------VIIGDNA-----SALALA-EELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEAL  359 (360)
T ss_pred             ------EEeCCHH-----HHHHHH-HHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhh
Confidence                  4443211     233444 555677999998776642   4689999995  888999888876

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.75  E-value=2.7e-17  Score=143.47  Aligned_cols=182  Identities=14%  Similarity=0.158  Sum_probs=111.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++|++++|+||+|.+|.+++.. .++......++++   |+||.++ +|+|+||+++++  ++++.+      
T Consensus       194 ~~i~~l~~~~~~~~i~De~~~~~~~~g~~-~~~~~~~~~~d~~---t~sK~~~-~G~riG~~~~~~--~~~~~~------  260 (379)
T TIGR00707       194 KALREICKDKDALLIFDEVQTGIGRTGKF-FAYEHYGIEPDII---TLAKGLG-GGVPIGATLAKE--EVAEAF------  260 (379)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCccchh-hhHHhcCCCCCEE---EEccccc-CCcccEEEEEcH--HHHhhh------
Confidence            36899999999999999999988765532 2222222223333   7899988 999999999987  444311      


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC-CcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP-CITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ........++.++..+.++.+.+ +.. .  ..+.++.++++++.+.+.|+++. .......+..|.++|     
T Consensus       261 -----~~~~~~~~~~~~~~~~~aa~aaL-~~~-~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~-----  326 (379)
T TIGR00707       261 -----TPGDHGSTFGGNPLACAAALAVL-EVI-E--KERLLENVKEKGDYFKERLEELGKNYPNKEVRGKGLMLG-----  326 (379)
T ss_pred             -----cCCCCCCCCCCCHHHHHHHHHHH-HHH-H--hhhHHHHHHHHHHHHHHHHHHHHhhCCCCccccCceEEE-----
Confidence                 11111122333344443333333 211 1  12355666667777776665531 111011233678888     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAF  225 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~  225 (233)
                          ++++  .      +...+.+.|+++||.+.|+.    .+++|+++.  .+++++++++++|++.
T Consensus       327 ----~~~~--~------~~~~~~~~l~~~Gv~v~~~~----~~~lRi~~~~~~t~~~i~~~~~~l~~~  378 (379)
T TIGR00707       327 ----IELE--A------PCKDIVKKALEKGLLVNCAG----PKVLRFLPPLIITKEEIDEAVSALEEA  378 (379)
T ss_pred             ----EEec--C------cHHHHHHHHHHCCcEEeeCC----CCEEEEECCCcCCHHHHHHHHHHHHHh
Confidence                5443  1      23445555778899999953    479999975  4899999999999875

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.75  E-value=2.8e-17  Score=143.45  Aligned_cols=181  Identities=14%  Similarity=0.179  Sum_probs=112.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++|+||+|.+|.+++.. ..+...+..+.   +.|+||.++ +|+|+||+++++  ++.+.   .   
T Consensus       191 ~~l~~l~~~~~~~lI~DEv~~g~g~~g~~-~~~~~~~~~~d---i~t~sK~l~-~G~~ig~v~~~~--~~~~~---~---  257 (377)
T PRK02936        191 QEVQTLCKKFGALLIIDEVQTGIGRTGTL-FAYEQFGLDPD---IVTVAKGLG-NGIPVGAMIGKK--ELGTA---F---  257 (377)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCcCchh-hHHHhhCCCCc---EEEEccccc-CCCccEEEEEcH--HHHhh---c---
Confidence            37899999999999999999998776642 22222222222   337999988 899999999987  34421   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEEEe
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~~  156 (233)
                           .......+++.++..+.++.+.+ +....   ....+.++++.+.+.+.|++    ++.+.. ..+ .|+++|  
T Consensus       258 -----~~~~~~~t~~~~~~~~aaa~a~l-~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~~-~g~~~~--  324 (377)
T PRK02936        258 -----GPGSHGSTFGGNPLAMAAAKEVL-QVIKQ---PSFLEEVQEKGEYFLQKLQEELEHLECVKN-IRG-KGLMIG--  324 (377)
T ss_pred             -----cCCCCCCCCCCCHHHHHHHHHHH-HHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCcEEe-Eee-cceEEE--
Confidence                 11111122333334443444443 22211   23345566666666666655    232221 223 468899  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEe--ecCHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITF--AVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~--~~~~~~l~~~~~~l~~~l  226 (233)
                             +.++  .      +...+.+.|.++||.+.|+.    .+++|+++  ..+++++++++++|.+++
T Consensus       325 -------i~~~--~------~~~~~~~~l~~~gv~v~~~g----~~~lRi~p~~~~~~~~i~~~i~~l~~~~  377 (377)
T PRK02936        325 -------IECT--E------EVAPVIEQLREEGLLVLSAG----PNVIRLLPPLVVTKEELDQAVYLLKKVL  377 (377)
T ss_pred             -------EEec--c------hHHHHHHHHHHCCeEEecCC----CCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence                   5543  1      34556667788999999853    47999995  458999999999998753

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.75  E-value=2.1e-17  Score=146.30  Aligned_cols=193  Identities=15%  Similarity=0.063  Sum_probs=114.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++|+||+|++|.+++. ...+...   +....+.++||.++ +|+|+||+++++  ++++.+      
T Consensus       221 ~~l~~lc~~~gillI~DEV~tg~gr~g~-~~a~~~~---~~~pDi~~lsK~l~-~G~pig~v~~~~--~i~~~~------  287 (420)
T TIGR00700       221 PALLDWCREHGIVFIADEVQTGFARTGA-MFACEHE---GPEPDLITTAKSLA-DGLPLSGVTGRA--EIMDAP------  287 (420)
T ss_pred             HHHHHHHHHcCCEEEEEecccCCcccch-hHHHhhc---CCCCCEEEeecccc-CCcceEEEEecH--HHHhhc------
Confidence            3789999999999999999999977763 2122112   22233557999987 899999999987  444311      


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHH--hhh-cHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQI--LEK-TEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                           .......+++.++..++++++.+  ++. ...+...++.+.++++.+.+.   +.++.+.. ..+. |.++|   
T Consensus       288 -----~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L~~l~---~~~~~~~~-vrg~-G~~~~---  354 (420)
T TIGR00700       288 -----APGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDRLTTLK---AVDPRIGD-VRGL-GAMIA---  354 (420)
T ss_pred             -----CCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH---hhCCCEEE-eecc-ceEEE---
Confidence                 11122234444444443443333  221 123344444444444444333   33444333 4555 56666   


Q ss_pred             CCCcccccccccc-cCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSL-LEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       158 ~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~  227 (233)
                            +.+..+. ..+.......+...+.++||.+.|++.|+  +++|++++  .+++++++++++|.+++.
T Consensus       355 ------i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~--~~lRl~p~l~~~~~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       355 ------VELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMFG--NIIRFLPPLTIGDELLSEGLDILCAILA  419 (420)
T ss_pred             ------EEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCCC--CEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence                  3331110 00000112334444568899999988776  79999986  389999999999998874

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.74  E-value=8.8e-17  Score=143.57  Aligned_cols=197  Identities=16%  Similarity=0.170  Sum_probs=121.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++|+||+|.+|.+++. +.++..++....   +.|+||.++ +|+|+||+++++  ++++.   .   
T Consensus       243 ~~l~~l~~~~gillI~DEV~tg~gr~g~-~~a~~~~~v~pD---i~t~sK~l~-~G~pig~v~~~~--~i~~~---~---  309 (451)
T PRK06918        243 QEVRNICSEHGILFVADEIQTGFARTGK-YFAIEHFDVVPD---LITVSKSLG-AGVPISGVIGRK--EIMDE---S---  309 (451)
T ss_pred             HHHHHHHHHcCCEEEEeccccCcCccCc-eehhHhcCCCCC---EEeeehhhc-CCCccEEEEEcH--HHHhc---c---
Confidence            3789999999999999999999987763 223333332122   558999977 899999999987  44432   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHH--HHhhh-cHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVP--QILEK-TEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                           .......+++.++..+.++.+  .++++ ...++.+.+.+.+.++.+.+.+   +.+.+.. ..+.|+++.|   
T Consensus       310 -----~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~---~~~~~~~-vrg~G~~~~~---  377 (451)
T PRK06918        310 -----APGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKN---KYNCIGD-VRGLGAMCAF---  377 (451)
T ss_pred             -----CCCCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh---hCCCcee-eccceeEEEE---
Confidence                 111223344444444433222  22222 2334555555555555554433   2333322 4567899888   


Q ss_pred             CCCccccccccccc-CCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHHh
Q 047983          158 SEDKCLLKLNYSLL-EGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       158 ~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~  230 (233)
                            .....+.. .+.......+.+.+.++||.+.|++.|+  +++|++++  .+++++++++++|.+++++..
T Consensus       378 ------~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~~--~~lrl~p~l~~t~~~id~~l~~l~~~l~~~~  445 (451)
T PRK06918        378 ------ELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTYG--NVIRVLMPLVITDEQLEEGLTIIEESLQACY  445 (451)
T ss_pred             ------EEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecCCCC--CEEEEECCCccCHHHHHHHHHHHHHHHHHHH
Confidence                  22211000 0000123445555678899999987775  78999885  489999999999999998764

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.73  E-value=8.2e-17  Score=140.44  Aligned_cols=190  Identities=13%  Similarity=0.121  Sum_probs=118.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCC--CccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGN--THFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++|++||+++|+||+|+...++.  ........+...+++|++.|+||.++.+|   ||+++++  ++.+.  +. 
T Consensus       188 ~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G---g~~~~~~--~~~~~--~~-  259 (385)
T PRK05958        188 AELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSG---AAVLGSE--TLIDY--LI-  259 (385)
T ss_pred             HHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccCC---cEEEcCH--HHHHH--HH-
Confidence            378999999999999999998765542  22222223444567899999999998888   9998876  33321  11 


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                             .....+ ..+.+.++.. .+..+.++.. ... ...++.+.++++.+.+.|+++ ++.. .+|.|+ ++|   
T Consensus       260 -------~~~~~~-~~~~~~~~~~~aa~~aal~~~-~~~-~~~~~~~~~~~~~l~~~L~~~-~~~~-~~~~~~-~~~---  323 (385)
T PRK05958        260 -------NRARPF-IFTTALPPAQAAAARAALRIL-RRE-PERRERLAALIARLRAGLRAL-GFQL-MDSQSA-IQP---  323 (385)
T ss_pred             -------HhCccc-eecCCCCHHHHHHHHHHHHHH-hcC-HHHHHHHHHHHHHHHHHHHHc-CCCc-CCCCCC-EEE---
Confidence                   111111 1111222222 2232222211 111 567889999999999999886 3443 456554 556   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC---CCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG---LKDWLRITFAV--EPSAFEIGLGRMKAFY  226 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~---~~~~~Rl~~~~--~~~~l~~~~~~l~~~l  226 (233)
                            +.++...     ++.++..+ |.++||.+.++..+.   ..+++|+++..  +++++++++++|.+++
T Consensus       324 ------~~~~~~~-----~~~~~~~~-l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~  385 (385)
T PRK05958        324 ------LIVGDNE-----RALALAAA-LQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL  385 (385)
T ss_pred             ------EEeCCHH-----HHHHHHHH-HHHCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence                  4443111     23345544 557799999865543   24799999983  8999999999997653

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.73  E-value=1.4e-16  Score=139.54  Aligned_cols=191  Identities=16%  Similarity=0.124  Sum_probs=117.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCC--CccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGN--THFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++|++||++||+||+|....++.  ....+...+.+ +..++++|+||.+  +|+|+||+++++  .+++.  +  
T Consensus       194 ~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~-~~~i~~~S~sK~~--~g~r~G~v~~~~--~~~~~--l--  264 (397)
T PRK06939        194 PEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMD-RVDIITGTLGKAL--GGASGGYTAGRK--EVIDW--L--  264 (397)
T ss_pred             HHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCC-CCcEEEEECHHHh--CccCceEEEeCH--HHHHH--H--
Confidence            378999999999999999996422222  11112222222 4569999999987  356999999987  34421  1  


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHH-H-HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTV-G-AVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                             .........+.+..++. . +.+.+ +. . ....+.++.++++++.+.+.|+++ ++.. ..+.++++.+  
T Consensus       265 -------~~~~~~~~~~~~~~~~~~~a~~~al-~~-~-~~~~~~~~~~~~~~~~l~~~L~~~-~~~~-~~~~~~~~~~--  330 (397)
T PRK06939        265 -------RQRSRPYLFSNSLAPAIVAASIKVL-EL-L-EESDELRDRLWENARYFREGMTAA-GFTL-GPGEHPIIPV--  330 (397)
T ss_pred             -------HHhCccccccCCCCHHHHHHHHHHH-HH-H-hcCHHHHHHHHHHHHHHHHHHHHc-CCCc-CCCCCCEEEE--
Confidence                   11111111121222222 2 22222 11 1 123577889999999999999887 4443 4566666644  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----CCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                              .++...     ++.+++.+++ ++||.+.++. |+.    .+++|++++  .+++++++++++|.+++++.
T Consensus       331 --------~~~~~~-----~~~~~~~~L~-~~gI~v~~~~-~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~  394 (397)
T PRK06939        331 --------MLGDAK-----LAQEFADRLL-EEGVYVIGFS-FPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKEL  394 (397)
T ss_pred             --------EECCHH-----HHHHHHHHHH-HCCceEeeeC-CCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence                    122111     2455666655 4599999644 432    368999886  38999999999999988764

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.73  E-value=1.5e-16  Score=139.46  Aligned_cols=184  Identities=11%  Similarity=0.100  Sum_probs=114.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccc-cccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFV-PMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|+||+|+++.+++.... ....+.++     +.|+||.++ +|+|+||+++++  ++++.   .  
T Consensus       199 ~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pd-----i~t~sK~l~-~G~~ig~~~~~~--~~~~~---~--  265 (389)
T PRK01278        199 KGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPD-----IMAVAKGIG-GGFPLGACLATE--EAAKG---M--  265 (389)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCC-----EEEEehhcc-CCcceEEEEEcH--HHHhc---c--
Confidence            3789999999999999999999876664221 11122221     458999976 899999999987  34432   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHH--hhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQI--LEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                            .......+++.++..++++++.+  ++.. ..++..++.+.++++++.+.+.   .+.+.....+ .|.++|  
T Consensus       266 ------~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~---~~~~~~~v~g-~G~~~~--  333 (389)
T PRK01278        266 ------TPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVDR---FPDVIEEVRG-KGLLLG--  333 (389)
T ss_pred             ------CCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh---CCCceeeEec-ccEEEE--
Confidence                  11222233444444443443333  1111 2345556666666666555332   3322211334 577777  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~  228 (233)
                             ++++.       ++.+++.++++ +||.+.|+.    .+++|+++.  .+++++++++++|.+++++
T Consensus       334 -------i~~~~-------~~~~~~~~l~~-~GV~~~p~~----~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~  388 (389)
T PRK01278        334 -------LKCVV-------PNRDLVQALRD-EGLLTVGAG----DNVVRLLPPLIITEEEIDEALERLERAAES  388 (389)
T ss_pred             -------EEEec-------CHHHHHHHHHH-CCeEEeecC----CCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence                   44421       25566666664 599999974    479999864  5899999999999998864

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.71  E-value=7.7e-17  Score=129.60  Aligned_cols=183  Identities=18%  Similarity=0.246  Sum_probs=131.7

Q ss_pred             CcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhhhhhHHhhhh
Q 047983           11 GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMDD   90 (233)
Q Consensus        11 ~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (233)
                      |.++++||+|-+|.  | ..+.+.-+..++|++++.+|||.||++|+|+||...+.  .+.   ++.        ++++.
T Consensus       191 nglVVvDEAYidFs--g-~~S~~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~~--~ia---~il--------n~~Ka  254 (375)
T KOG0633|consen  191 NGLVVVDEAYIDFS--G-VESRMKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFPL--SIA---EIL--------NRAKA  254 (375)
T ss_pred             CcEEEEeeeeEeec--c-ccccchHhHhCCceeehhhhhhhcCcceeEeecccccH--HHH---HHH--------HhccC
Confidence            79999999999986  3 22345546778999999999999999999999999987  444   344        56655


Q ss_pred             hhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCCcccccccccc
Q 047983           91 YLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSL  170 (233)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  170 (233)
                      -.+++.  ....+|++++ ++.....+...++.+.+.+.++...|.+++....+..+..+.|+.         +++....
T Consensus       255 PYNiS~--~~s~~AL~Al-s~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~daNFiL---------i~v~~~~  322 (375)
T KOG0633|consen  255 PYNISV--AGSVAALAAL-SDSNGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSDANFIL---------IEVTGGD  322 (375)
T ss_pred             Cccccc--hhHHHHHHhc-CcccchHHHHHHHHHHHHHHHHHHHhhcCccccCCCCcccccEEE---------EEEcCCC
Confidence            444432  3333677775 333456788999999999999999999987776555666677777         5554221


Q ss_pred             cCCCCChHHHHHHHHhccCEEEEC-CcccCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 047983          171 LEGINSDTEFALKLAKEESIIVLP-GITVGLKDWLRITFAVEPSAFEIGLGRMKAF  225 (233)
Q Consensus       171 ~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~  225 (233)
                      . ++  +....++.+-++||+|+- |+.-+..+++|++.++++++ .-.++.++++
T Consensus       323 n-~~--akkly~q~at~~gVvVRfrgse~~c~G~lRitvGt~Een-tvL~k~~K~~  374 (375)
T KOG0633|consen  323 N-GM--AKKLYKQDATKMGVVVRFRGSEEGCKGYLRITVGTPEEN-TVLMKCLKQF  374 (375)
T ss_pred             c-HH--HHHHHHHHHHhcceEEEEcCCccccceeEEEEcCCcccc-hHHHHHHHhh
Confidence            0 11  456667777789999975 44434479999999986665 4566666554

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.70  E-value=4.3e-16  Score=137.95  Aligned_cols=189  Identities=16%  Similarity=0.191  Sum_probs=118.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++|++||+++|+||+|++|.+++. .......+....   +.++||.++ +|+|+||+++++  ++++.   .    
T Consensus       223 ~l~~lc~~~g~llI~DEv~tg~gr~g~-~~~~~~~~~~pD---iv~~sK~l~-~G~pigav~~~~--~i~~~---~----  288 (421)
T PRK06777        223 ALRTLCDEHGILLIADEVQTGFARTGK-LFAMEYYDVKPD---LITMAKSLG-GGMPISAVVGRA--EVMDA---P----  288 (421)
T ss_pred             HHHHHHHHcCCEEEEechhhCCccCCc-hhhhhhcCCCCC---EEeeehhhc-CCCceEEEEEcH--HHHhc---c----
Confidence            689999999999999999999877764 222222332222   337999988 899999999987  44431   1    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEEEec
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~~~  157 (233)
                          .......+++.++..++++++.+ + ..++  ..+.+.++++.+++.+.|++    .+.+. ...+.|.+|.+.  
T Consensus       289 ----~~~~~~~T~~~~p~~~aaa~a~L-~-~~~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~-~vrg~G~~~~i~--  357 (421)
T PRK06777        289 ----APGGLGGTYAGNPLAVAAALAVL-D-VIAE--EKLCQRALILGAHLVEVLEKAKASCPAIV-DIRARGSMVAVE--  357 (421)
T ss_pred             ----CCCCCCCCCCcCHHHHHHHHHHH-H-HHHh--ccHHHHHHHHHHHHHHHHHHHHHhCCCeE-EecCceEEEEEE--
Confidence                11122233444444443444443 2 1111  34556666666666666655    23333 267888888751  


Q ss_pred             CCCcccccccccccCCCCChH---HHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDT---EFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~---~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~  227 (233)
                              +..+.. +. ++.   ..+...+.++||.+.|+..|+  +++|++..  .+++++++++++|.+++.
T Consensus       358 --------~~~~~~-~~-~~~~~~~~l~~~~~~~Gv~i~~~~~~g--~~lr~~ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        358 --------FNDPQT-GK-PSPEFTRQYQRQALEEGLLLLSCGVHG--NVIRFLYPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             --------EecCcc-CC-ccHHHHHHHHHHHHhCCeEEeecCCCC--CEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence                    211100 00 122   233333567899999987776  79999885  589999999999998873

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.69  E-value=7.2e-16  Score=136.12  Aligned_cols=194  Identities=13%  Similarity=0.122  Sum_probs=120.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccC-EEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~-~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|+||+|....++..........+..++ .++++|+||.|+++|   ||+++++  ++++   .+  
T Consensus       198 ~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G---G~~~~~~--~~~~---~l--  267 (410)
T PRK13392        198 EAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLG---GYIAASA--DLID---FV--  267 (410)
T ss_pred             HHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhccc---chhhcCH--HHHH---HH--
Confidence            37899999999999999999954443321111111111122 388999999999999   9999876  3442   11  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                            .++.....++.+.++.. .+....++.  .+.....++.+.++++++.+.|+++ ++.. .+++++++..    
T Consensus       268 ------~~~~~~~~~s~~~~~~~~~a~~aaL~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~i----  333 (410)
T PRK13392        268 ------RSFAPGFIFTTALPPAVAAGATAAIRH--LKTSQTERDAHQDRVAALKAKLNAN-GIPV-MPSPSHIVPV----  333 (410)
T ss_pred             ------HHhCcchhccCcCCHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHc-CCCC-CCCCCCEEEE----
Confidence                  22221111233333222 333233322  1223455678899999999999887 5553 4566665522    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC---CCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG---LKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~---~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                            .++.+.     +..++..++++++||.+.|+....   ...++|+++.  .++++++.+++.|.+++++.
T Consensus       334 ------~~~~~~-----~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~  398 (410)
T PRK13392        334 ------MVGDPT-----LCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDRL  398 (410)
T ss_pred             ------EeCCHH-----HHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence                  133211     134556666678899999864332   2468999996  48899999999999887653

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.68  E-value=2.1e-15  Score=132.71  Aligned_cols=195  Identities=17%  Similarity=0.127  Sum_probs=123.9

Q ss_pred             ChHHHHHHHcCcEEEEcccc-CccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVY-GHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++|+|++| .++.+.+..+.++.  .. +  ++++|+||.+  +|+|.||++++++ .+.++  +   
T Consensus       179 ~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~--~~-d--v~~~s~sK~l--~G~~gg~i~~~~~-~~~~~--l---  245 (402)
T cd00378         179 KRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP--GA-D--VVTTTTHKTL--RGPRGGLILTRKG-ELAKK--I---  245 (402)
T ss_pred             HHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc--CC-c--EEEeccccCC--CCCCceEEEeccH-HHHHH--H---
Confidence            37899999999999999995 56655553232332  22 2  6899999975  7899999999763 23321  1   


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                            .+.......+.+......+++..+......+..+.++.++++++.+.+.|+++ ++..+..|.+++++|     
T Consensus       246 ------~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~v~-----  313 (402)
T cd00378         246 ------NSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER-GFKVVSGGTDNHLVL-----  313 (402)
T ss_pred             ------HHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC-CCeEeecCCCCeEEE-----
Confidence                  11111111121111121222222211222256677888999999999999887 555433567899999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECC----cccC--CCCcEEEEeec------CHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPG----ITVG--LKDWLRITFAV------EPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg----~~f~--~~~~~Rl~~~~------~~~~l~~~~~~l~~~l~  227 (233)
                          +.++..   +.  +...+.++|+++||.+.++    ..++  ..+++|+++..      +.++++++++.|.+++.
T Consensus       314 ----v~~~~~---~~--~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~  384 (402)
T cd00378         314 ----VDLRPK---GI--TGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALK  384 (402)
T ss_pred             ----EeCCcc---CC--CHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence                555421   11  3456667788999999763    2221  24689998865      47899999999998775


Q ss_pred             HH
Q 047983          228 RH  229 (233)
Q Consensus       228 ~~  229 (233)
                      +-
T Consensus       385 ~~  386 (402)
T cd00378         385 DA  386 (402)
T ss_pred             cc
Confidence            43

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PLN00144 acetylornithine transaminase

Probab=99.68  E-value=1.1e-15  Score=133.71  Aligned_cols=185  Identities=12%  Similarity=0.120  Sum_probs=117.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccc-cccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFV-PMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|+||+|+.|..++..+. ....+.++     +.||||.+ .+|+|+||+++++  ++.+.  +   
T Consensus       191 ~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PD-----i~t~sK~l-~~G~pig~v~~~~--~~~~~--~---  257 (382)
T PLN00144        191 QGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPD-----IMTLAKPL-AGGLPIGAVLVTE--KVASA--I---  257 (382)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCC-----EEEecccc-cCCcceEEEEEcH--HHHhc--c---
Confidence            3689999999999999999999877764221 24445553     78999994 5799999999987  44431  1   


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHH--HHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVP--QILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                            .......+++.++..++++.+  .+++++ ..+++.++.+.+   ++.+.+.+.+.+.+.. ... .|+++|  
T Consensus       258 ------~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l---~~~l~~~~~~~~~~~~-vrg-~G~~~~--  324 (382)
T PLN00144        258 ------NPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYL---RELLRRKLGGNPHVKE-VRG-VGLLVG--  324 (382)
T ss_pred             ------CCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHH---HHHHHHHHhhCCCcee-eec-CceEEE--
Confidence                  111122233333333322222  333322 335555555555   3344444555543322 223 799999  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                             +.++.       +... +...+.++||.+.|+..   .+.+|++++.  +++++++++++|.+++.+.
T Consensus       325 -------l~l~~-------~~~~-~~~~~~~~Gv~i~~~~~---~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~~  381 (382)
T PLN00144        325 -------IQLDV-------PAGP-LVDACRDSGLLVLTAGK---GDVVRLVPPLVISEAELEQAVEILADCLPAL  381 (382)
T ss_pred             -------EEecC-------ccHH-HHHHHHHCCeEEeecCC---CCEEEEeCCCccCHHHHHHHHHHHHHHHHhc
Confidence                   66632       1334 44556688999998732   4899998884  7999999999999998754

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.67  E-value=9.5e-16  Score=134.81  Aligned_cols=181  Identities=17%  Similarity=0.163  Sum_probs=112.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++|++||+++|+||+|.++..++... .....+....   +.++||.++.+|+|+||+++++  ++++.   .    
T Consensus       211 ~l~~l~~~~g~lli~DEv~~g~g~~g~~~-~~~~~~~~pd---i~~~sK~lg~gg~~ig~~~~~~--~i~~~---~----  277 (396)
T PRK04073        211 AARELCKEENVLFIADEIQTGLGRTGKLF-ACDWDNVTPD---MYILGKALGGGVFPISCVAANR--DILGV---F----  277 (396)
T ss_pred             HHHHHHHHcCCEEEEecchhCCCcCcHHH-HhhhcCCCCC---EEEecccccCCCCcceEEEEcH--HHHhh---h----
Confidence            68999999999999999999986655321 1111111122   4468999999999999999987  44421   1    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC--CcccccCCCccEEEEEecCC
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP--CITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~~~g~~~~~~~~~  159 (233)
                          .......+++.++..++++++.+ +...+   ....+..+++++++.+.|+++.  .+.. ..+. |.|++     
T Consensus       278 ----~~~~~~~t~~~~~~~~aaa~aaL-~~~~~---~~l~~~~~~~~~~l~~~L~~l~~~~i~~-~~~~-g~~~~-----  342 (396)
T PRK04073        278 ----TPGSHGSTFGGNPLACAVSIAAL-EVLEE---EKLPERSLELGEYFKEQLKEIDNPMIKE-VRGR-GLFIG-----  342 (396)
T ss_pred             ----cCCCCCCCCCCCHHHHHHHHHHH-HHHHh---cCHHHHHHHHHHHHHHHHHhhcCCcccc-eecc-eEEEE-----
Confidence                11112223343333333444444 21111   2334555667888888887752  2221 3344 56677     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEe--ecCHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITF--AVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~--~~~~~~l~~~~~~l~~~l  226 (233)
                          +.++  .     ++.++..+ |.++||.+.|..    .+++|++.  ..+++++++++++|.+++
T Consensus       343 ----~~~~--~-----~~~~~~~~-l~~~Gv~~~~~~----~~~iRi~p~l~~t~e~i~~~~~~l~~~l  395 (396)
T PRK04073        343 ----VELN--E-----PARPYCEA-LKEEGLLCKETH----ETVIRFAPPLVITKEELDWAFEKIKAVL  395 (396)
T ss_pred             ----EEec--c-----hHHHHHHH-HHHCCeEEecCC----CCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence                4443  1     24445544 567899998732    47999995  458999999999998875

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.67  E-value=1.4e-15  Score=132.74  Aligned_cols=181  Identities=12%  Similarity=0.130  Sum_probs=118.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccc-cccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFV-PMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|+++|+++|+||+|.++..++.... ....+.++     +.||||.++ +|+|+||+++++  ++.+.  +    
T Consensus       190 ~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pd-----i~t~sK~l~-~G~~ig~~~~~~--~~~~~--~----  255 (375)
T PRK04260        190 ALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPD-----IFTLAKGLA-NGVPVGAMLAKS--SLGGA--F----  255 (375)
T ss_pred             HHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCC-----EEEeccccc-CCcceEEEEEcH--HHHhh--c----
Confidence            688999999999999999998765553211 12223332     348999865 799999999987  33321  1    


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           .......+++.++..+ ++..+.++.. .+++.++.++..+..++.+.+.+.+.+.+.  ..+..|+++|     
T Consensus       256 -----~~~~~~~t~~~~~~~~-~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~g~~~~-----  322 (375)
T PRK04260        256 -----GYGSHGSTFGGNKLSM-AAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVT--TVRGLGYMIG-----  322 (375)
T ss_pred             -----CCCCCCCCCCcCHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCee--EEeccceEEE-----
Confidence                 1111122233333333 4444444332 346778888888888888888877664332  2234799999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAF  225 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~  225 (233)
                          ++++  .      +...+.+.+.++||.+.|..    .+.+|+++..  +++++++++++|++.
T Consensus       323 ----~~~~--~------~~~~~~~~l~~~Gi~v~~~~----~~~lR~~~~~~~t~~~i~~~l~~l~~~  374 (375)
T PRK04260        323 ----IETT--A------DLSQLVEAARDKGLIVLTAG----TNVIRLLPPLTLTKEEIEQGIAILSEV  374 (375)
T ss_pred             ----EEec--C------cHHHHHHHHHhCCCEEecCC----CCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence                5442  1      33444556667899998852    3789999853  899999999999765

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.66  E-value=3.9e-15  Score=130.52  Aligned_cols=191  Identities=16%  Similarity=0.159  Sum_probs=115.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCC--ccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNT--HFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~--~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++|++||++||+||+|....++..  ...+...+. .+..++++|+||.+  +|+|+||+++++  .+++.   + 
T Consensus       190 ~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~-~~~di~~~s~sK~l--~g~r~G~~~~~~--~~~~~---l-  260 (393)
T TIGR01822       190 DEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVM-GRVDIITGTLGKAL--GGASGGFTTARK--EVVEL---L-  260 (393)
T ss_pred             HHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCC-CCCeEEEEEChHHh--hCCCcEEEEeCH--HHHHH---H-
Confidence            4789999999999999999964333221  111122222 24569999999975  478999999886  34421   1 


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                             ........++.+.++..  ++.+++ +  ..+..++.++.++++++++.+.|++. ++.. ..+.++++ .  
T Consensus       261 -------~~~~~~~~~~~~~~~~~~~a~~~al-~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~-~--  325 (393)
T TIGR01822       261 -------RQRSRPYLFSNSLPPAVVGASIKVL-E--MLEASNELRDRLWANTRYFRERMEAA-GFDI-KPADHPII-P--  325 (393)
T ss_pred             -------HHhCccceecCCCCHHHHHHHHHHH-H--HHhcCHHHHHHHHHHHHHHHHHHHHc-CCCC-CCCCCCEE-E--
Confidence                   11111111222222222  223332 1  11234677889999999999999876 4543 34444433 3  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----CCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                             +.++...     ++.+++..++ ++||.+. +..|+.    ..++|++++.  +++++++++++|.+++++.
T Consensus       326 -------i~~~~~~-----~~~~l~~~L~-~~gI~v~-~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~~  390 (393)
T TIGR01822       326 -------VMLYDAV-----LAQRFARRLL-EEGIYVT-GFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGREL  390 (393)
T ss_pred             -------EEeCCHH-----HHHHHHHHHH-HCCeeEe-eeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence                   2222111     2445555544 6699998 555542    2468988875  7999999999999987654

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.66  E-value=2e-15  Score=132.71  Aligned_cols=185  Identities=11%  Similarity=0.054  Sum_probs=116.4

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|+||+|..|.+++... .....+.+  +   +.+|||.++ +|+|+||+++++  ++++.   .   
T Consensus       208 ~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~p--D---i~t~sK~l~-~G~~ig~~~~~~--~~~~~---~---  273 (398)
T PRK03244        208 AAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTP--D---VVTLAKGLG-GGLPIGACLAFG--PAADL---L---  273 (398)
T ss_pred             HHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCC--C---EEEEchhhh-CCcccEEEEEcH--HHHhh---c---
Confidence            78999999999999999999887665421 12222222  2   348899987 899999999987  34321   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCP-KKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~g~~~~~~~~~  159 (233)
                           .......+++.++..+.++.+. ++.-.+   .+..+.++++.+.+.+.|++++ .... .....|.++|     
T Consensus       274 -----~~~~~~~t~~~~~~~~aaa~a~-l~~~~~---~~~~~~~~~~~~~l~~~L~~~~-~~~~~~v~g~g~~~~-----  338 (398)
T PRK03244        274 -----TPGLHGSTFGGNPVACAAALAV-LDTIAS---EGLLENAERLGEQLRAGIEALG-HPLVDHVRGRGLLLG-----  338 (398)
T ss_pred             -----cCCCCcCCCCCCHHHHHHHHHH-HHHHHh---ccHHHHHHHHHHHHHHHHHhcC-CCceeeEeeccEEEE-----
Confidence                 1111122333333333233333 321111   2345666666777888887752 2110 1223688888     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHHh
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~~  230 (233)
                          +.++.       +....+.+.+.++||.+.|..    .+.+|+++..  ++++++++++.|.+++.+.+
T Consensus       339 ----i~~~~-------~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~~  396 (398)
T PRK03244        339 ----IVLTA-------PVAKAVEAAAREAGFLVNAVA----PDVIRLAPPLIITDAQVDAFVAALPAILDAAA  396 (398)
T ss_pred             ----EEEec-------cHHHHHHHHHHHCCeEEeecC----CCEEEEECCCcCCHHHHHHHHHHHHHHHHhcc
Confidence                55532       133445555667899998842    3789999764  89999999999999998754

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.66  E-value=3.5e-15  Score=130.44  Aligned_cols=191  Identities=15%  Similarity=0.143  Sum_probs=115.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCc--cccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTH--FVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~--~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|.++|++||+++|+||+|+.+.++...  ......+. .++++++.|+||.++++|   ||+++++  ++++.   + 
T Consensus       183 ~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g---G~~~~~~--~~~~~---~-  252 (385)
T TIGR01825       183 PEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAIGVVG---GYAAGHK--ELIEY---L-  252 (385)
T ss_pred             HHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCC-cCCcEEEEeccHHhhcCC---CEEecCH--HHHHH---H-
Confidence            36899999999999999999887665221  11111223 467899999999998777   9999876  34321   1 


Q ss_pred             hhhhhhHHhhhhhhhhccCcchH-HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           79 FHSISLNMRMDDYLLLSESVYTT-VGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                             .........+...++. ..+..+.++. ..++ .+..+.+.++++++.+.|+++ ++.. ..|++.++.+   
T Consensus       253 -------~~~~~~~~~~~~~~~~~~~a~~~al~~-~~~~-~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~---  318 (385)
T TIGR01825       253 -------KNRARPFLFSTAQPPAVVAALAAAVDE-LQRS-PELMERLWDNTRFFKAGLGKL-GYDT-GGSETPITPV---  318 (385)
T ss_pred             -------HHhCccccccCCCCHHHHHHHHHHHHH-HhcC-HHHHHHHHHHHHHHHHHHHHc-CCCC-CCCCCCEEEE---
Confidence                   1111111112112222 1232222221 1111 245667778899999999886 5553 4566554433   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----CCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                             .++...     ++.++...++++ ||.+. +..|+.    ..++|+++.  .+++++++++++|.+++++.
T Consensus       319 -------~~~~~~-----~~~~~~~~L~~~-gi~v~-~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~~  382 (385)
T TIGR01825       319 -------VIGDEK-----AAQEFSRRLFDE-GIFAQ-SIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKEL  382 (385)
T ss_pred             -------EECCHH-----HHHHHHHHHHHC-CcEEc-ccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHHh
Confidence                   222110     134555555544 99885 445542    368999775  48999999999999988653

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.65  E-value=3e-15  Score=132.05  Aligned_cols=192  Identities=14%  Similarity=0.100  Sum_probs=119.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||+++|+||+|.++.++|... .....+....   +.|+||.++ +|+|+||+++++  ++++.   .   
T Consensus       207 ~~l~~l~~~~~~llI~DEv~tG~gr~G~~~-~~~~~~v~pD---i~t~sK~l~-gG~~ig~~~~~~--~~~~~---~---  273 (406)
T PRK12381        207 QGLRELCDRHNALLIFDEVQTGVGRTGELY-AYMHYGVTPD---VLTTAKALG-GGFPIGAMLTTE--KCASV---M---  273 (406)
T ss_pred             HHHHHHHHHcCCEEEEcchhhCCCCCcchh-hhHhhCCCCC---EEEehhhhh-CCCceEEEEEcH--HHHhh---c---
Confidence            378999999999999999999987766422 2111221111   459999976 799999999987  34421   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC-CcccccCC-CccEEEEEecC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP-CITCPKKP-EGSMFVMYCGS  158 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~-~~g~~~~~~~~  158 (233)
                           .......+++.++..++.+.+.+ +. ..  ..+.++.++++.+++.+.|+++. ....+..+ ..|.++|    
T Consensus       274 -----~~~~~~~t~~~~pl~~aaa~a~l-~~-l~--~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~----  340 (406)
T PRK12381        274 -----TVGTHGTTYGGNPLASAVAGKVL-EL-IN--TPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIG----  340 (406)
T ss_pred             -----CCCCCCCCCCCCHHHHHHHHHHH-HH-Hh--hccHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEE----
Confidence                 11111222333333332333332 11 11  23467788888888888887742 11111222 3477777    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHHhh
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                           +.++.+.    ......+...+.++||.+.+..    .+++|+++.  .+++++++++++|.+++.+..+
T Consensus       341 -----~~l~~~~----~~~~~~~~~~l~~~Gv~v~~~g----~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~  402 (406)
T PRK12381        341 -----CVLNAEY----AGKAKQISQEAAKAGVMVLIAG----PNVVRFAPALNISEEEITTGLDRFARACERFVS  402 (406)
T ss_pred             -----EEecCch----hhHHHHHHHHHHHCCcEEeeCC----CCEEEEeCCccCCHHHHHHHHHHHHHHHHHHHh
Confidence                 4443210    0134556677778899998642    468999877  4899999999999999988754

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=99.64  E-value=8.2e-16  Score=128.53  Aligned_cols=193  Identities=17%  Similarity=0.221  Sum_probs=121.1

Q ss_pred             HHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhhhhhHH
Q 047983            7 TKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNM   86 (233)
Q Consensus         7 ~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (233)
                      ++..+..+|.|-+|.+     ++..|+.+..++|  |.+.|+||.-|.+|.|+||.++.+. ++.++|           .
T Consensus       158 ~~g~~~k~I~D~AYYW-----PhyTpI~~~aD~D--iMLFT~SK~TGHAGSR~GWAlVKD~-~Va~kM-----------~  218 (363)
T PF04864_consen  158 LNGSSGKVIHDLAYYW-----PHYTPITAPADHD--IMLFTLSKLTGHAGSRFGWALVKDE-EVAKKM-----------T  218 (363)
T ss_dssp             STTTEEEEEEE-TT-S-----TTTS---S-B--S--EEEEEHHHHCS-GGG-EEEEEES-H-HHHHHH-----------H
T ss_pred             cCCCCcceeeeeeeec-----ccccccCCCCCCc--eEEEEEecccCccccccceeeecCH-HHHHHH-----------H
Confidence            3445667899999998     3445555443333  9999999999999999999999984 333221           2


Q ss_pred             hhhhhhhhccCcchHHHH---HHHHhhhcHH-----HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec-
Q 047983           87 RMDDYLLLSESVYTTVGA---VPQILEKTEE-----EFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG-  157 (233)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~---~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~-  157 (233)
                      .+....+++++.-+|..+   +..++..-..     +.+.--++.+++|.+.|.+.+..-..+..+.-  ..-|+.|+. 
T Consensus       219 ~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~--~~~yC~ff~~  296 (363)
T PF04864_consen  219 KYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKF--SPQYCNFFKR  296 (363)
T ss_dssp             HHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE-----SCEEETTTTC
T ss_pred             HHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcC--Cchhcccccc
Confidence            333344566667777632   3333322111     48888999999999999999977433332111  122332222 


Q ss_pred             --CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-CCcEEEEeecCHHHHHHHHHHHHHH
Q 047983          158 --SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-KDWLRITFAVEPSAFEIGLGRMKAF  225 (233)
Q Consensus       158 --~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~Rl~~~~~~~~l~~~~~~l~~~  225 (233)
                        .|.|...++.+..     ++.+.++..|+++||.-+.|..||. ..|+|+|+...+++++..++||.++
T Consensus       297 ~~~psPafAWlkCe~-----eed~DC~~~l~~~~I~tr~G~~fga~~ryVRlSml~~~d~Fd~l~~rL~~l  362 (363)
T PF04864_consen  297 VREPSPAFAWLKCER-----EEDEDCYAVLREAKIITRSGVLFGADSRYVRLSMLKRDDDFDQLLERLSKL  362 (363)
T ss_dssp             EEE---SEEEEEESS-----CGGSSHHHHHHCTTEEEEEGGGGTS-TTEEEEESSS-HHHHHHHHHHHHCC
T ss_pred             ccCCCCCeEEEecCC-----cccccHHHHHHhCCcccCCCCccCCCCCeEEEeccCCHHHHHHHHHHHHhh
Confidence              2223333377754     2456788889999999999999997 6899999999999999999999754

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.64  E-value=7.7e-15  Score=129.41  Aligned_cols=193  Identities=17%  Similarity=0.102  Sum_probs=118.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||++||+||+|+...++..........+. .+..|+++||||.||++|   ||+++++  ++++.   .  
T Consensus       198 ~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G---G~~~~~~--~~~~~---l--  267 (407)
T PRK09064        198 AEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVMG---GYIAGSA--ALVDA---V--  267 (407)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhccC---ceEecCH--HHHHH---H--
Confidence            47899999999999999999844343221111111121 234688999999999999   9999876  34421   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           80 HSISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                            ........++.+.++..  ++.+.+ +  .-+.....++.++++++++.+.|+++ ++.. .++.++ +++   
T Consensus       268 ------~~~~~~~~~t~~~~~~~~~aa~~al-~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~-iv~---  332 (407)
T PRK09064        268 ------RSYAPGFIFTTSLPPAIAAAALASI-R--HLKESNEERERHQERAAKLKAALDAA-GIPV-MPNESH-IVP---  332 (407)
T ss_pred             ------HHhCccccccCcCCHHHHHHHHHHH-H--HHhcCHHHHHHHHHHHHHHHHHHHHc-CCCC-CCCCCC-EEE---
Confidence                  11111111222233222  333332 1  11112345688899999999999886 4543 344444 445   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                            +.++...     +..++..++++++||.+.+......   .+++|+++..  ++++++++++.|.+++++.
T Consensus       333 ------i~~~~~~-----~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~  398 (407)
T PRK09064        333 ------VMVGDPE-----KCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARL  398 (407)
T ss_pred             ------EEeCCHH-----HHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence                  3332110     1345555566677999998643321   3689999884  8899999999999988754

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.63  E-value=5.3e-15  Score=131.12  Aligned_cols=201  Identities=13%  Similarity=0.119  Sum_probs=114.9

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++|++||+++|+||+|.++.++.........+.+ +    +.+|||.++ +|+|+||+++++  ++++.+.-.    
T Consensus       220 ~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~p-D----i~t~sK~l~-~G~pig~v~~~~--~i~~~~~~~----  287 (423)
T TIGR00713       220 GLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEP-D----LTTLGKIIG-GGLPVGAFGGRR--EIMERLAPE----  287 (423)
T ss_pred             HHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCc-c----hhhhhhhhc-CCCceeeeeEHH--HHHHhhCcC----
Confidence            6899999999999999999998543222222222233 2    348999987 899999999987  444311000    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCCc
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDK  161 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (233)
                          .......+++.++..++++++.+-......+.+..++.....++.+.+.+++.+ +.....+.|+++...+..+..
T Consensus       288 ----~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~g~~~~v~~~~~~~  362 (423)
T TIGR00713       288 ----GPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTG-IPHTVNRVGSMFSLFFTEEEV  362 (423)
T ss_pred             ----CCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEeeccEEEEEEecCCC
Confidence                011122233333344334444431111223667777777777888887777763 321123455555531111100


Q ss_pred             ccccccccccCCCCChH--HHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHH
Q 047983          162 CLLKLNYSLLEGINSDT--EFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       162 ~~~~~~~~~~~~~~~~~--~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~  228 (233)
                      ...    ... ...++.  ..+...+.++||.+.++ .|   +.+|++...+++++++++++|.+++++
T Consensus       363 ~~~----~~~-~~~~~~~~~~~~~~l~~~Gv~v~~~-~~---~~~~l~~~~t~~~i~~~~~~l~~~l~~  422 (423)
T TIGR00713       363 TNY----ADA-KKSDTELFAKFFHEMLDKGVFLPPS-QF---EACFLSAAHTEEDIENTIEAAEEVFAE  422 (423)
T ss_pred             CCh----hhh-hcccHHHHHHHHHHHHHCCeEEecC-Cc---cceeeECCCCHHHHHHHHHHHHHHHhh
Confidence            000    000 000111  23344445689998754 33   357888878999999999999998864

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.61  E-value=2.8e-14  Score=125.72  Aligned_cols=193  Identities=17%  Similarity=0.122  Sum_probs=117.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|+||+|+...++..........+. .+..++++||||.|+.+|   ||+++++  ++++.   +  
T Consensus       197 ~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G---G~i~~~~--~~~~~---l--  266 (402)
T TIGR01821       197 EEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG---GYIAASR--KLIDA---I--  266 (402)
T ss_pred             HHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC---ceeecCH--HHHHH---H--
Confidence            47899999999999999999954443221111111111 234588899999999999   9999886  34421   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           80 HSISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                            ........++.+.++..  ++.+.+ +. ..+. ...++.++++++++.+.|+++ ++.. .++.+++ +.   
T Consensus       267 ------~~~~~~~~~t~~~~~~~~aaa~aaL-~~-~~~~-~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~i-~~---  331 (402)
T TIGR01821       267 ------RSYAPGFIFTTSLPPAIAAGATASI-RH-LKES-QDLRRAHQENVKRLKNLLEAL-GIPV-IPNPSHI-VP---  331 (402)
T ss_pred             ------HHhCcCceecCcCCHHHHHHHHHHH-HH-hhcC-HHHHHHHHHHHHHHHHHHHHc-CCCc-CCCCCCE-EE---
Confidence                  11111111222233322  333343 21 1111 445666778899999999887 4543 4555554 44   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC---CCCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG---LKDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~---~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                            +.++.+.     ...++..++++++||.+.|.....   ..+++|+++..  ++++++++++.|.+++++.
T Consensus       332 ------i~~~~~~-----~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~  397 (402)
T TIGR01821       332 ------VIIGDAA-----LCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDRL  397 (402)
T ss_pred             ------EEeCCHH-----HHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence                  2232110     134555555667799998854322   14689999974  8999999999999988764

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.61  E-value=2.1e-14  Score=126.23  Aligned_cols=190  Identities=16%  Similarity=0.198  Sum_probs=109.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|+||+|..+.++|... .....+.+  .++   ++||.++.+++|+||+++++  ++++.   +   
T Consensus       203 ~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~p--d~~---~~sK~l~~g~~~ig~v~~~~--~~~~~---~---  269 (400)
T PTZ00125        203 QVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKP--DIV---LLGKALSGGLYPISAVLAND--DVMLV---I---  269 (400)
T ss_pred             HHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCC--CEE---EEcccccCCCcCcEEEEEcH--HHHhh---c---
Confidence            68999999999999999999876665321 11122222  233   57899877667999999987  44421   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEEEe
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~~  156 (233)
                           .......+++.++..+.++.+.+ +.-.++   ...+..+++.+.+.+.|++    .+.... ..+ .|.+.|  
T Consensus       270 -----~~~~~~~t~~~~~~~~~aa~~~l-~~i~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~-~~~-~g~~~~--  336 (400)
T PTZ00125        270 -----KPGEHGSTYGGNPLACAVAVEAL-EVLKEE---KLAENAQRLGEVFRDGLKELLKKSPWVKE-IRG-KGLLNA--  336 (400)
T ss_pred             -----cCCCCCCCCCcCHHHHHHHHHHH-HHHHhc---CHHHHHHHHHHHHHHHHHHHHhcCCCeEE-Eec-ccEEEE--
Confidence                 11111122333333332332322 111111   1223333344444444443    222221 334 466777  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHHhhc
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRHAKK  232 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~~~  232 (233)
                             +.++.+.  +. +..++..++ .++||.+.|+.    .+++|++..  .+++++++++++|.+++.++..+
T Consensus       337 -------v~~~~~~--~~-~~~~~~~~l-~~~Gv~v~~~~----~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~~~~~  399 (400)
T PTZ00125        337 -------IVFDHSD--GV-NAWDLCLKL-KENGLLAKPTH----DNIIRFAPPLVITKEQLDQALEIIKKVLKSFDSN  399 (400)
T ss_pred             -------EEEccCc--ch-HHHHHHHHH-HHCCeEEeecC----CCEEEEECCccCCHHHHHHHHHHHHHHHHHHhcC
Confidence                   4443211  11 234455554 47799999863    479999954  58999999999999999987654

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.60  E-value=2.3e-14  Score=126.95  Aligned_cols=192  Identities=16%  Similarity=0.165  Sum_probs=115.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++|+||+|++|.+++.. ..+..++....   +.|+||.++ +|+|+||+++++  ++++.  +    
T Consensus       222 ~~l~~lc~~~g~llI~DEv~tg~gr~G~~-~a~~~~~~~pD---i~t~gK~l~-~G~pigav~~~~--~i~~~--~----  288 (421)
T PRK09792        222 AAIRRLCDEHGIVMIADEVQSGFARTGKL-FAMDHYADKPD---LMTMAKSLA-GGMPLSGVVGNA--NIMDA--P----  288 (421)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCCCCch-hHHHhcCCCCc---EEEeehhhc-CCCceEEEEEcH--HHHhc--c----
Confidence            36899999999999999999999777642 33333322111   679999965 799999999987  44431  1    


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHH--HhhhcHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCCc-cEEEEEe
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQ--ILEKTEEEFFSKITDILREAADICCDRLKE-IPCITCPKKPEG-SMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~-g~~~~~~  156 (233)
                           .......+++.++..++++.+.  +++  ..+++++.+ .+.++.....+.|.+ ++.+   ..+.| |.++|  
T Consensus       289 -----~~~~~~~T~~gnpl~~aaa~a~l~~l~--~~~~~~~~~-~~g~~l~~~l~~l~~~~p~v---~~vrG~Gl~~~--  355 (421)
T PRK09792        289 -----APGGLGGTYAGNPLAVAAAHAVLNIID--KESLCERAN-QLGQRLKNTLIDAKESVPAI---AAVRGLGSMIA--  355 (421)
T ss_pred             -----CCCCcCCCCCCCHHHHHHHHHHHHHHH--hhhHHHHHH-HHHHHHHHHHHHHHHhCCCc---ceecccceEEE--
Confidence                 1111222333334443333332  222  224444444 444444444444533 5432   45777 99999  


Q ss_pred             cCCCccccccccccc-CCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLL-EGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~  227 (233)
                             +.++.+.. .........+...+.++||.+.+.+.+  .+.+|+..+.  +++++++++++|.+++.
T Consensus       356 -------ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g~~--~~~irl~P~l~i~~~ei~~~~~~l~~~l~  420 (421)
T PRK09792        356 -------AEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAY--GNVIRFLYPLTIPDAQFDAAMKILQDALS  420 (421)
T ss_pred             -------EEecCCccCCcchHHHHHHHHHHHHCCcEEeecCCC--CCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence                   55532110 000012344555566789999643221  4789998663  89999999999998874

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.60  E-value=7e-15  Score=129.64  Aligned_cols=192  Identities=18%  Similarity=0.183  Sum_probs=107.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++|+||+|+.+...+... .....+...   .+.|+||.++. |+|+||+++++  ++++.+. .   
T Consensus       215 ~~l~~l~~~~~~~li~Dev~~g~g~~g~~~-~~~~~~~~~---d~~t~sK~l~~-g~~~g~~~~~~--~~~~~~~-~---  283 (413)
T cd00610         215 KALRELCRKHGILLIADEVQTGFGRTGKMF-AFEHFGVEP---DIVTLGKGLGG-GLPLGAVLGRE--EIMDAFP-A---  283 (413)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCcCcchh-hHhhcCCCC---CeEEEcccccC-ccccEEEEEcH--HHHHhhc-c---
Confidence            378999999999999999999875444321 111112111   24589999876 89999999976  3442110 0   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP---CITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~~  157 (233)
                           .......+++.++..+.++.+.+ +. ..+  ....+.++++.+.+.+.|+++.   .......+ .|.++|   
T Consensus       284 -----~~~~~~~t~~~~~~~~~a~~a~l-~~-l~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~~~---  350 (413)
T cd00610         284 -----GPGLHGGTFGGNPLACAAALAVL-EV-LEE--EGLLENAAELGEYLRERLRELAEKHPLVGDVRG-RGLMIG---  350 (413)
T ss_pred             -----CCCCCCCCCCcCHHHHHHHHHHH-HH-HHh--ccHHHHHHHHHHHHHHHHHHHHhhCCcEEEeec-CceEEE---
Confidence                 11111122333333332333222 11 111  2445566666666666665531   11111223 456666   


Q ss_pred             CCCccccccccccc--CCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLL--EGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFY  226 (233)
Q Consensus       158 ~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l  226 (233)
                            +.++....  .........+.+.|.++||.+.|++    .+++|++++.  +++++++++++|.+++
T Consensus       351 ------~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~----~~~lR~~~~~~~t~~~i~~~~~~l~~~l  413 (413)
T cd00610         351 ------IELVKDRATKPPDKELAAKIIKAALERGLLLRPSG----GNVIRLLPPLIITEEEIDEGLDALDEAL  413 (413)
T ss_pred             ------EEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC----CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence                  33332100  0000133445555667899999975    4789998774  7899999999998753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.60  E-value=4.5e-14  Score=121.58  Aligned_cols=187  Identities=18%  Similarity=0.138  Sum_probs=114.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCc-cccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTH-FVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+||+|....++... ..........++.++++|+||.++.+|   ||+++++  .++        
T Consensus       152 ~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~i~~~~--~~~--------  218 (349)
T cd06454         152 PELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG---GYIAGSK--ELI--------  218 (349)
T ss_pred             HHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccC---CEEECCH--HHH--------
Confidence            47899999999999999999854332211 111111234466899999999998777   9999876  333        


Q ss_pred             hhhhhHHhhhhh---hhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEE
Q 047983           80 HSISLNMRMDDY---LLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        80 ~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~  155 (233)
                            ..+...   ...+.+.+... .++...++.. .+ .+..++++.++++.+.+.|+++ ++.. ..+.++++.+ 
T Consensus       219 ------~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~-~~~~~~~~~~~~~~l~~~l~~~-g~~~-~~~~~~~~~~-  287 (349)
T cd06454         219 ------DYLRSYARGFIFSTSLPPAVAAAALAALEVL-QG-GPERRERLQENVRYLRRGLKEL-GFPV-GGSPSHIIPP-  287 (349)
T ss_pred             ------HHHHHhchhhhccCCCCHHHHHHHHHHHHHH-hc-CHHHHHHHHHHHHHHHHHHHhc-CCcc-cCCCCCcEEE-
Confidence                  222211   11122222222 2222222211 11 4667889999999999999886 4443 3343455455 


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEEeec--CHHHHHHHHHHHHHH
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRITFAV--EPSAFEIGLGRMKAF  225 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~~~~--~~~~l~~~~~~l~~~  225 (233)
                              +.++..      .+.+.+.+.|.++||.+.++.....   .+++|+++..  +++++++++++|+++
T Consensus       288 --------~~~~~~------~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         288 --------LIGDDP------AKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             --------EeCCCh------HHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence                    222111      1334455555566999998643221   4789999984  899999999999764

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.60  E-value=5.3e-14  Score=122.68  Aligned_cols=191  Identities=13%  Similarity=0.084  Sum_probs=114.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|+++|+++|+||+|.....+    .+..  .. +..++++|+||.++ +|.|+||+++++  ++++.+  .   
T Consensus       166 ~~i~~la~~~~~~livDea~~~g~~~----~~~~--~~-~~di~v~s~sK~~~-~~g~~G~l~~~~--~~i~~l--~---  230 (370)
T TIGR02539       166 GKVAKVCREKGVPLLLNCAYTVGRMP----VSAK--EI-GADFIVGSGHKSMA-ASGPCGVLGMSE--EWEDIV--L---  230 (370)
T ss_pred             HHHHHHHHHcCCeEEEECccccCCcC----CCHH--Hc-CCCEEEeeCccccc-CCCCEEEEEECH--HHHhhh--c---
Confidence            37899999999999999999974211    1111  11 23367799999987 577899999987  455421  1   


Q ss_pred             hhhhHHhhhhhhhh-------ccCc-chHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cCCCccE
Q 047983           81 SISLNMRMDDYLLL-------SESV-YTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCP-KKPEGSM  151 (233)
Q Consensus        81 ~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~g~  151 (233)
                            .......+       +... .....+.+++  ....+++...++.++++ +++.+.|+++ ++..+ ..|..+.
T Consensus       231 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al--~~~~~~l~~~~~~~~~~-~~l~~~L~~~-g~~~~~~~~s~t~  300 (370)
T TIGR02539       231 ------RKSRYSPVKEVELLGCTSRGAPIVTMMASF--PHVVERVKRWDEEVKKT-RWFVAELEDI-GFIQLGQKPKEHD  300 (370)
T ss_pred             ------ccccCCccceeeeecccccccHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHHHhC-CcEEEccCCCcCc
Confidence                  11110000       1111 1111223332  11244555555555554 5899999887 44321 2356688


Q ss_pred             EEEEecCCCccccccccccc--CCCCChHHHHHHHHhccCEE-EECCcccCCCCcEEEEee-cCHHHHHHHHHHHHHHHH
Q 047983          152 FVMYCGSEDKCLLKLNYSLL--EGINSDTEFALKLAKEESII-VLPGITVGLKDWLRITFA-VEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~-v~pg~~f~~~~~~Rl~~~-~~~~~l~~~~~~l~~~l~  227 (233)
                      |++         ++++.-..  .+.......+.+.|+++||. +.|    +.++++|+++. .++++++++++.|+++++
T Consensus       301 ~v~---------~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~----~~~~~iRis~~~~t~e~i~~l~~~L~~~~~  367 (370)
T TIGR02539       301 LVK---------FETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRS----GQTKYFKLSVYGLTKEQVEYVVDSFEEIVE  367 (370)
T ss_pred             eEE---------EECCchhHHhhhhccccHHHHHHHHhCCCccccC----CcceEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence            887         44431000  00011335677777888997 554    33579999963 388999999999998876


Q ss_pred             HH
Q 047983          228 RH  229 (233)
Q Consensus       228 ~~  229 (233)
                      ++
T Consensus       368 ~~  369 (370)
T TIGR02539       368 EY  369 (370)
T ss_pred             hc
Confidence            53

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.59  E-value=3.3e-14  Score=120.60  Aligned_cols=187  Identities=18%  Similarity=0.197  Sum_probs=117.9

Q ss_pred             HHcCcEEEEccccCccccCCC-ccc---cccc----cCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            8 KKLGIMVIADEVYGHLVFGNT-HFV---PMGV----FGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         8 ~~~~~~lI~De~y~~~~~~~~-~~~---~~~~----~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ...|..|+.|++|.-..+.+. +..   .+..    .+..++++.+.|.||. ..||..+++++++.  +-+        
T Consensus       204 AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKI-Tf~GaGva~~aaS~--~Nl--------  272 (425)
T PF12897_consen  204 AAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKI-TFPGAGVAFFAASE--ANL--------  272 (425)
T ss_dssp             SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTT-S-TTSS-EEEEE-H--HHH--------
T ss_pred             CCcCeEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEeccccc-ccCCcceeeeecCH--HHH--------
Confidence            356999999999996666322 211   2222    2446889999999998 88999999999998  222        


Q ss_pred             hhhhhHHhhhhh---hhhccCcchHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHHhhc-CC---CcccccCCCc
Q 047983           80 HSISLNMRMDDY---LLLSESVYTTVGAVPQILEK---TEEEFFSKITDILREAADICCDRLKE-IP---CITCPKKPEG  149 (233)
Q Consensus        80 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~l~~~L~~-~~---~~~~~~~~~~  149 (233)
                            ..++..   .+++..-..|. .-..++++   +..+|+++.++.++-+++.+.+.|++ ++   ++..|..|.|
T Consensus       273 ------~~~~~~~~~~tIgpdKvNQL-RHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~G  345 (425)
T PF12897_consen  273 ------AWIKKHLSVQTIGPDKVNQL-RHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKG  345 (425)
T ss_dssp             ------HHHHHHHHHH-S---HHHHH-HHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SB
T ss_pred             ------HHHHHHhcCceeCccHHHHH-HHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCC
Confidence                  333332   23333334443 22233332   34689999999999999999999977 76   5666899999


Q ss_pred             cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEEC-CcccCC-----CCcEEEEeec-CHHHHHHHHHHH
Q 047983          150 SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLP-GITVGL-----KDWLRITFAV-EPSAFEIGLGRM  222 (233)
Q Consensus       150 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~-----~~~~Rl~~~~-~~~~l~~~~~~l  222 (233)
                      |||++           ++...     .....+..+.++.||.++| |+.|..     +..+||+.+. +.++++.+++.+
T Consensus       346 GYFIs-----------ld~~~-----G~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~  409 (425)
T PF12897_consen  346 GYFIS-----------LDVLD-----GTAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVF  409 (425)
T ss_dssp             SS-EE-----------EEEST-----T-HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHH
T ss_pred             ceEEE-----------EecCC-----ChHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHH
Confidence            99999           54432     3789999999999999999 777752     5789999997 899999999988


Q ss_pred             HHHHHH
Q 047983          223 KAFYYR  228 (233)
Q Consensus       223 ~~~l~~  228 (233)
                      .-.++-
T Consensus       410 ~~cv~l  415 (425)
T PF12897_consen  410 ATCVKL  415 (425)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765543

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PRK07505 hypothetical protein; Provisional

Probab=99.58  E-value=5.8e-14  Score=123.72  Aligned_cols=192  Identities=14%  Similarity=0.126  Sum_probs=109.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCc-cccccccC--CccCEEEEccCccccCCCCceEEEEEecCCCccccccchh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTH-FVPMGVFG--SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~-~~~~~~~~--~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++|.++|++|+++||+||+|+...++... ......++  ..+++|+++|+||.|+.+|   ||++++++ ++++   ..
T Consensus       199 ~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~G---g~~~~~~~-~~~~---~~  271 (402)
T PRK07505        199 KELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASG---GVIMLGDA-EQIE---LI  271 (402)
T ss_pred             HHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhccC---eEEEeCCH-HHHH---HH
Confidence            37899999999999999999654443221 11112222  3578999999999999888   99876442 2332   11


Q ss_pred             hhhhhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           78 FFHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                              .......+++.++++.. ++..+.++...++++.+.++.++++.+.+...+...      ....+.+..+  
T Consensus       272 --------~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~g~~~~i~~--  335 (402)
T PRK07505        272 --------LRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPTE------QSGSFLPIRL--  335 (402)
T ss_pred             --------HHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhc------CCCCCCCEEE--
Confidence                    22222222333333332 222222221223344555666666666544332111      1122222233  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRITFAV--EPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~  228 (233)
                               +....  .  .....+.+.|.++||.+.|+..+..   .+++|+++..  ++++++++++.|.+++++
T Consensus       336 ---------~~~~~--~--~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~  399 (402)
T PRK07505        336 ---------IYIGD--E--DTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDE  399 (402)
T ss_pred             ---------EEeCC--H--HHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence                     22111  0  1233444555578999999743322   3689999994  899999999999988754

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.57  E-value=4.1e-14  Score=125.88  Aligned_cols=195  Identities=18%  Similarity=0.173  Sum_probs=110.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++|++||+++|+||+|.+|..+|.... ....+   ....+.|+||.++ +|+|+|++++++  ++++.+       
T Consensus       232 ~l~~lc~~~g~llI~DEv~tG~gr~G~~~~-~~~~g---v~pDi~t~sK~lg-~G~pigav~~~~--~i~~~~-------  297 (433)
T PRK08117        232 KLREICDRHGILLIFDEVQTGFGRTGEWFA-AQTFG---VVPDIMTIAKGIA-SGLPLSAVVASK--ELMEQW-------  297 (433)
T ss_pred             HHHHHHHHcCCEEEEecchhccCccccchh-HhhcC---CCCCEeehhhhcc-CCCcceeEEEcH--HHHhhc-------
Confidence            689999999999999999999876664321 11111   1223579999977 799999999987  344211       


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEEEec
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~~~  157 (233)
                          .......+++.++...+++++.+ +.-..   ....+.++++.+++.+.|++    .+.+.  ..+.-|.+++   
T Consensus       298 ----~~~~~~~T~~~np~~~aaa~a~L-~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~~~--~vrg~Gl~~g---  364 (433)
T PRK08117        298 ----PLGSHGTTFGGNPVACAAALATL-EVIKE---EKLLDNANEMGAYALERLEVLKEKHPVIG--DVRGIGLMIG---  364 (433)
T ss_pred             ----cCCCCCCCCCcCHHHHHHHHHHH-HHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCcee--eeecCCcEEE---
Confidence                11111222333333332333333 21111   12233333334444444433    32221  1233355555   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEe--ecCHHHHHHHHHHHHHHHHHHhh
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITF--AVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~--~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                            +.+..+...........+.+.+.++||.+.+...  ..+++|++.  ..+++++++++++|.+++++..+
T Consensus       365 ------i~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~--~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~  432 (433)
T PRK08117        365 ------IEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGN--AGNVLRMIPPLTVTKEEIDEGLDILDEALTEYEA  432 (433)
T ss_pred             ------EEEecCCCCcchHHHHHHHHHHHHCCCEEeecCC--CCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHhc
Confidence                  3332111000001345566677788999876321  247899995  45999999999999999987654

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.57  E-value=1.7e-13  Score=118.20  Aligned_cols=198  Identities=18%  Similarity=0.147  Sum_probs=117.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCcccc-CCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++|++++|+|++++..   . .+.++.   ..+..+++.|++|.+ +.+|  +||+++++  .+++.+.- ..
T Consensus       145 ~~i~~l~~~~~~~livD~~~s~g---~-~~~~~~---~~~~d~~~~s~~K~l~~~~G--~g~~~~~~--~~~~~~~~-~~  212 (355)
T TIGR03301       145 EAIAKVARSHGAVLIVDAMSSFG---A-IPIDIE---ELDVDALIASANKCLEGVPG--FGFVIARR--DLLEASAG-NA  212 (355)
T ss_pred             HHHHHHHHHcCCEEEEEeccccC---C-cccchh---hcCccEEEecCCcccccCCc--eeEEEECH--HHHHHhhC-CC
Confidence            47999999999999999877642   1 222222   224448899999975 5566  69999987  45432110 00


Q ss_pred             hhh--hhHHhh---hhhhhhccCcchHH-HHHHHHhhhcHHH-HHHHHHHHHHHHHHHHHHHhhcCCCcccccCC--Ccc
Q 047983           80 HSI--SLNMRM---DDYLLLSESVYTTV-GAVPQILEKTEEE-FFSKITDILREAADICCDRLKEIPCITCPKKP--EGS  150 (233)
Q Consensus        80 ~~~--~~~~~~---~~~~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~g  150 (233)
                      .+.  +.....   .........++... .++...++.-.++ .+.+.+++++++++++.+.|+++ ++....++  .++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~  291 (355)
T TIGR03301       213 RSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL-GFQPLLPERWQSP  291 (355)
T ss_pred             CCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc-CCeeecCCCCCCC
Confidence            000  000000   00000111222222 3333333222222 36777888899999999999887 44322222  346


Q ss_pred             EEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 047983          151 MFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAF  225 (233)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~  225 (233)
                      +++|         ++++..  ...  +.+.+.+.|.++||.+.||..+.. +++|+++..  ++++++.+++.|+++
T Consensus       292 ~~~~---------~~~~~~--~~~--~~~~~~~~l~~~gi~i~~~~~~~~-~~iRis~~~~~~~~~i~~~~~~l~~~  354 (355)
T TIGR03301       292 IIVS---------FLYPDD--PDF--DFDDFYQELKERGFVIYPGKLTLA-DTFRIGTIGEIDAADIERLLEAIKDA  354 (355)
T ss_pred             cEEE---------EECCCC--Ccc--hHHHHHHHHHHCCEEEECCccccc-cEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            6777         444321  011  344566777788999999876554 799999854  889999999998765

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK10534 L-threonine aldolase; Provisional

Probab=99.57  E-value=4.1e-14  Score=121.44  Aligned_cols=176  Identities=11%  Similarity=0.059  Sum_probs=104.7

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCc-cCEEEEccCccccCCCCceEE-EEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSI-VPVLTLGSISKRWIVPGWRLG-WLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~-~~~i~~~s~sK~~~~~G~R~G-~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|+++|++|+++|++||+|......... .+...+... ++++  .||||.|+++   +| |+++++  ++++.   +  
T Consensus       151 ~i~~~~~~~~~~lvvDEA~~~~~~~~~~-~~~~~~~~~~~~~~--~s~SK~~~~~---~G~~~~~~~--~~i~~---~--  217 (333)
T PRK10534        151 QAWEFTRERNLALHVDGARIFNAVVAYG-CELKEITQYCDSFT--ICLSKGLGTP---VGSLLVGNR--DYIKR---A--  217 (333)
T ss_pred             HHHHHHHHcCCeEEeeHHHHHHHHHHcC-CCHHHHHhcCCEEE--EEeEcCCCCc---ccceEEcCH--HHHHH---H--
Confidence            5778999999999999998732111001 112222222 3333  3899988764   68 577766  44421   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           80 HSISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                            ..++.....+.+.....  .+.+.+ +    +.. +..+...++++++.+.|+++ ++.. .+| +++|+|   
T Consensus       218 ------~~~~~~~~~~~~~~~~~~a~~~~~l-~----~~~-~~~~~~~~~r~~l~~~L~~~-g~~~-~~~-~~nfv~---  279 (333)
T PRK10534        218 ------RRWRKMTGGGMRQAGILAAAGLYAL-K----HNV-ARLQEDHDNAAWLAEQLREA-GADV-MRQ-DTNMLF---  279 (333)
T ss_pred             ------HHHHHHhCCchhhHHHHHHHHHHHH-H----hhH-HHHHHHHHHHHHHHHHHHhC-CCcc-CCC-CceEEE---
Confidence                  22222111111111111  222222 1    112 23333455678999999987 5554 455 688999   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~  227 (233)
                            ++++.       ++.+.+.+.|+++||.|.||.      ++|++..  .+++++++++++|++++.
T Consensus       280 ------~~~~~-------~~~~~~~~~l~~~gi~v~~~~------~~rl~~~~r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        280 ------VRVGE-------EQAAALGEYMRERNVLINASP------IVRLVTHLDVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             ------EECCc-------hhHHHHHHHHHHcCeeecCCc------eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence                  55541       134555788889999999974      5788665  489999999999998764

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.57  E-value=3.2e-14  Score=127.09  Aligned_cols=192  Identities=16%  Similarity=0.123  Sum_probs=123.3

Q ss_pred             ChHHHHHHHcCcEEEEccccC--ccccCCC-----ccccccccCCccCEEEEccCccccCCCCceE-----E-EEEecCC
Q 047983            1 FCIEETTKKLGIMVIADEVYG--HLVFGNT-----HFVPMGVFGSIVPVLTLGSISKRWIVPGWRL-----G-WLVTSDP   67 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~--~~~~~~~-----~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~-----G-~~~~~~~   67 (233)
                      ++|.++|++||++||+|+++.  ...|...     ...++..+     ++.+.|++|.+.++|+|+     | |+++++ 
T Consensus       201 ~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i-----~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d-  274 (460)
T PRK13238        201 RAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEI-----AREMFSYADGLTMSAKKDAMVNIGGLLCFRD-  274 (460)
T ss_pred             HHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHH-----hhhhcccCcEEEEecccCCCCcceeEEEcCh-
Confidence            378999999999999999663  3444321     12222211     345678888888888886     4 444443 


Q ss_pred             CccccccchhhhhhhhhHHhhhhh-------hhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 047983           68 NGILQDLGVAFFHSISLNMRMDDY-------LLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIP  139 (233)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~  139 (233)
                      ++++              .+++..       .+.+.......+|++..+... .+++...+    .+++++|.+.|++. 
T Consensus       275 ~~l~--------------~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~----~~~~~~l~~~L~~~-  335 (460)
T PRK13238        275 EDLF--------------TECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYR----IGQVEYLGEGLEEA-  335 (460)
T ss_pred             HHHH--------------HHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHH----HHHHHHHHHHHHHC-
Confidence            2333              233222       122211111114555433221 22333333    33679999999886 


Q ss_pred             CcccccCCCccEEEEEecCCCcccccccccccC-CC----CChHHHHHHHHhccCEEEECCcccCC-------------C
Q 047983          140 CITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLE-GI----NSDTEFALKLAKEESIIVLPGITVGL-------------K  201 (233)
Q Consensus       140 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~ll~~~gi~v~pg~~f~~-------------~  201 (233)
                      ++.+ ..|.||+|++           ++...+. .+    .++.+++.+++++.||.++|++.|..             .
T Consensus       336 G~~~-~~p~Gg~~v~-----------~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~  403 (460)
T PRK13238        336 GVPI-QTPAGGHAVF-----------VDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPA  403 (460)
T ss_pred             CCCe-EccCCceEEE-----------EEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCcc
Confidence            6765 6899999999           4443321 11    13688999999999999999998852             3


Q ss_pred             CcEEEEeec---CHHHHHHHHHHHHHHHHHH
Q 047983          202 DWLRITFAV---EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       202 ~~~Rl~~~~---~~~~l~~~~~~l~~~l~~~  229 (233)
                      .++|+++..   +.+.++.+.++|.++.++.
T Consensus       404 ~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~~  434 (460)
T PRK13238        404 ELLRLAIPRRVYTQSHMDYVAEALKAVKENR  434 (460)
T ss_pred             ceEEEecccccCCHHHHHHHHHHHHHHHHhH
Confidence            789999997   8999999999999877543

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.57  E-value=6.3e-14  Score=121.54  Aligned_cols=189  Identities=17%  Similarity=0.140  Sum_probs=123.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCc--cccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTH--FVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~--~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++|++|++++++||+|+--++++..  ...-..+...+..|.++||||+||..|   ||++++.  .+.+  .++ 
T Consensus       191 ~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G---g~v~g~~--~~~d--~L~-  262 (388)
T COG0156         191 PELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG---GYIAGSA--ALID--YLR-  262 (388)
T ss_pred             HHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccC---ceeeCcH--HHHH--HHH-
Confidence            37999999999999999999988887543  222223445567899999999999999   9999987  4553  233 


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                             ++.+.++..+.-++..+ ++.+.+   ..-+.....++.++++...+.+.++.. ++.  ..+.......   
T Consensus       263 -------~~ar~~ifStalpP~~aaa~~~al---~~l~~~~~~r~~L~~~~~~~~~~~~~~-~~~--~~~s~s~I~p---  326 (388)
T COG0156         263 -------NRARPFIFSTALPPAVAAAALAAL---RILEEGPERRERLQELAAFFRSLLKAL-GLV--LLPSESPIIP---  326 (388)
T ss_pred             -------HhCCceeccCCCCHHHHHHHHHHH---HHHHhCHHHHHHHHHHHHHHHHHHHhc-CCc--cCCCCCCeee---
Confidence                   44455544444344433 333332   222345677888888888888666554 332  2233333333   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEEeec--CHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRITFAV--EPSAFEIGLGRMKAF  225 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~~~~--~~~~l~~~~~~l~~~  225 (233)
                            +.+..+.     ...+....++++ ||.+.+...-..   ...+|+|++.  ++++++.+++.|.+.
T Consensus       327 ------v~~gd~~-----~a~~~s~~l~~~-Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         327 ------VILGDEE-----RALEASRALLEE-GIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             ------eEeCCHH-----HHHHHHHHHHHC-CeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence                  2343221     144556666655 999987432221   4789999996  888888888877653

>PRK07179 hypothetical protein; Provisional

Probab=99.56  E-value=1.1e-13  Score=122.20  Aligned_cols=192  Identities=14%  Similarity=0.119  Sum_probs=117.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccC-EEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~-~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++|+||+|+...++......+..++..++ .+++.|+||.++   .|+||+++++  .+++   ..  
T Consensus       201 ~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g---~~~G~l~~~~--~~~~---~~--  270 (407)
T PRK07179        201 ADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFA---GRAGIITCPR--ELAE---YV--  270 (407)
T ss_pred             HHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhh---ccCeEEEeCH--HHHH---HH--
Confidence            47899999999999999999865443322111222332223 488999999975   3689999986  3332   11  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                            .........+.+.+++. +++.+.++.  .+.....++.++++++++.+.|+++ ++.. . +. +.+++    
T Consensus       271 ------~~~~~~~~~~~t~~~~~~aa~~aal~~--~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v-~-~~-~~i~~----  334 (407)
T PRK07179        271 ------PFVSYPAIFSSTLLPHEIAGLEATLEV--IESADDRRARLHANARFLREGLSEL-GYNI-R-SE-SQIIA----  334 (407)
T ss_pred             ------HHhCcCeeeCCCCCHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHc-CCCC-C-CC-CCEEE----
Confidence                  11111111222222222 333333321  2233567889999999999999887 5543 2 33 45556    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC---CCCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG---LKDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~---~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                           +.++..      .+.+.+.+.|.++||.+..-..-.   ..+++|+++..  ++++++++++.|.+++++.
T Consensus       335 -----l~~~~~------~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~  399 (407)
T PRK07179        335 -----LETGSE------RNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARDEV  399 (407)
T ss_pred             -----EEeCCH------HHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence                 333311      144666677888899843210000   14789999995  8999999999999988765

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.55  E-value=2.3e-13  Score=120.04  Aligned_cols=190  Identities=17%  Similarity=0.137  Sum_probs=115.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|+||+|+...++..........+. .+..|.++||||.|+.+|   ||+++++  +++        
T Consensus       197 ~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G---G~~~~~~--~~~--------  263 (406)
T PRK13393        197 AEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMG---GYITGSA--ALC--------  263 (406)
T ss_pred             HHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcccC---ceeeCCH--HHH--------
Confidence            37899999999999999999844444322111111111 124678899999999999   9999876  333        


Q ss_pred             hhhhhHHhhhhhh---hhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEE
Q 047983           80 HSISLNMRMDDYL---LLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVM  154 (233)
Q Consensus        80 ~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~  154 (233)
                            ..+....   .++.+.++..  ++.+.+ +. ..+. ...+..++++++++.+.|+++ ++.. .++.+.++.+
T Consensus       264 ------~~l~~~~~~~~~t~~~~p~~~aa~~aaL-~~-~~~~-~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~i~~v  332 (406)
T PRK13393        264 ------DFIRSFASGFIFTTSLPPAVAAGALASV-RH-LKAS-SAERERHQDRVARLRARLDKA-GIPH-LPNPSHIVPV  332 (406)
T ss_pred             ------HHHHHhCcCceecCccCHHHHHHHHHHH-HH-HhhC-HHHHHHHHHHHHHHHHHHHHc-CCCc-CCCCCCeEEE
Confidence                  2222211   1222223322  333333 21 1222 223466788899999999876 4443 4555554433


Q ss_pred             EecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC---CCCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          155 YCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG---LKDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~---~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                                .++.+.     +..++..++++++||.+.++....   ..+++|+++..  ++++++++++.|.+++++.
T Consensus       333 ----------~~~~~~-----~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~~  397 (406)
T PRK13393        333 ----------MVGDPV-----LCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWARL  397 (406)
T ss_pred             ----------EeCCHH-----HHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence                      222110     134445555555799999864332   13789999884  8999999999999988764

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.55  E-value=3.8e-13  Score=118.39  Aligned_cols=201  Identities=14%  Similarity=0.088  Sum_probs=119.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|+++|+++|+|++|....+.    ..+..+   +..++..|++|.||.+|  +||+++++  ++++.+.-....
T Consensus       180 ~~i~~l~~~~g~~~ivD~a~~~g~~~----~~~~~~---~~d~~~~s~~K~~gp~G--~G~l~~~~--~~~~~~~~~~~~  248 (401)
T PRK10874        180 ARAITLAHQAGMVVMVDGAQGAVHFP----ADVQAL---DIDFYAFSGHKLYGPTG--IGVLYGKS--ELLEAMSPWQGG  248 (401)
T ss_pred             HHHHHHHHHcCCEEEEECCccccccc----CCchhc---CCCEEEEecccccCCCc--cEEEEEch--HHHhcCCCeecC
Confidence            47899999999999999999753221    122222   23477899999888777  59999887  444322110000


Q ss_pred             hhh--hH--Hhh--h-hhhhhccCcch-HH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccE
Q 047983           81 SIS--LN--MRM--D-DYLLLSESVYT-TV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSM  151 (233)
Q Consensus        81 ~~~--~~--~~~--~-~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~  151 (233)
                      ...  ..  ..+  . ....+..++++ .. .++.+.++...+.-..+.+++.++.++++.+.|++++++..+..+. +.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~-~~  327 (401)
T PRK10874        249 GKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGFRSFRCQD-SS  327 (401)
T ss_pred             CcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC-Cc
Confidence            000  00  000  0 00011111222 11 3333322211122234467888888899999998887765433344 44


Q ss_pred             EEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC--------CCCcEEEEeec--CHHHHHHHHHH
Q 047983          152 FVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG--------LKDWLRITFAV--EPSAFEIGLGR  221 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--------~~~~~Rl~~~~--~~~~l~~~~~~  221 (233)
                      .++         +.++     +.  +.+.+...|.++||.+.+|..+.        ..+++|+|+..  ++++++..++.
T Consensus       328 i~~---------~~~~-----~~--~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~a  391 (401)
T PRK10874        328 LLA---------FDFA-----GV--HHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNA  391 (401)
T ss_pred             EEE---------EEEC-----Cc--CHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHH
Confidence            444         2232     22  23455567788999999988653        35899999995  78999999999


Q ss_pred             HHHHHHHH
Q 047983          222 MKAFYYRH  229 (233)
Q Consensus       222 l~~~l~~~  229 (233)
                      |+++++..
T Consensus       392 l~~~~~~~  399 (401)
T PRK10874        392 VDRALELL  399 (401)
T ss_pred             HHHHHHHh
Confidence            99887653

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.54  E-value=2.2e-13  Score=120.23  Aligned_cols=189  Identities=13%  Similarity=0.100  Sum_probs=112.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++|++||+++|+||+|..+..+|..    .+....+..+.+.|+||.++ +|+|+||+++++  ++.+   ..    
T Consensus       212 ~l~~l~~~~g~llI~DEv~tg~gr~G~~----~a~~~~~~~pdi~t~~K~l~-~G~piga~~~~~--~~~~---~~----  277 (408)
T PRK04612        212 RVRALCDQHDALLVLDEIQCGMGRTGTL----FAHWQEQVTPDIVTLAKALG-GGFPIGAMLAGP--KVAE---TM----  277 (408)
T ss_pred             HHHHHHHHcCCEEEEeccccCCCcCCch----hhhhhcCCCCCEEEEcchhc-CCCceEEEEECH--HHHh---hh----
Confidence            6899999999999999999998766531    11222345577889999976 799999999886  3432   11    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEEEec
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~~~  157 (233)
                          .......+++.++... ++..+.++.-.+   .+..+.++++-+++.+.|++    .+.+.. ....|.++..   
T Consensus       278 ----~~~~~~~t~~~~p~~~-aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~-vrg~Gl~~~i---  345 (408)
T PRK04612        278 ----QFGAHGTTFGGNPLAA-AVARVALRKLAS---PQIAANVARQSAALRAGLEALNAEFGVFAQ-VRGRGLMLGA---  345 (408)
T ss_pred             ----cCCCcCCCCCCCHHHH-HHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCCeee-eeccceEEEE---
Confidence                1112222333333333 333333322111   23344444444444444443    322221 3444433332   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHHhh
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                             .+...    ..+....+.+.+.++||.+.|..    .+.+|+...  .++++++++++++.+.+.+..+
T Consensus       346 -------~~~~~----~~~~a~~i~~~l~~~Gvlv~~~g----~~~lRl~Ppl~it~eeid~~l~~l~~~l~~~~~  406 (408)
T PRK04612        346 -------VLAPA----HAGQAGAILDLAAEHGLLLLQAG----PDVLRFVPALNLTDAELADGLARLRLALADYVA  406 (408)
T ss_pred             -------EecCc----hhhHHHHHHHHHHHCCeEEeeCC----CCEEEEcCCccCCHHHHHHHHHHHHHHHHHHhh
Confidence                   22100    00134455666778999998732    378999755  4899999999999999987654

>PLN02624 ornithine-delta-aminotransferase

Probab=99.54  E-value=1.7e-13  Score=123.12  Aligned_cols=193  Identities=12%  Similarity=0.073  Sum_probs=107.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++|.||+|..+..+|... .....+....   +.++||.++.+++++|++++++  ++++.   .   
T Consensus       248 ~~l~~lc~~~gillI~DEv~tG~GrtG~~~-a~~~~~i~pD---iv~lsK~lggG~~pigav~~~~--~i~~~---~---  315 (474)
T PLN02624        248 KAVRELCSKHNVLMIADEIQTGLARTGKML-ACDWEEVRPD---VVILGKALGGGVIPVSAVLADK--DVMLC---I---  315 (474)
T ss_pred             HHHHHHHHHcCCEEEEeccccCcCcCcchh-hHHhcCCCCC---EEEecccccCCCCcceeeeecH--HHHhH---h---
Confidence            378999999999999999999876665321 1111111122   3347999998889999999976  34321   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHH----HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEE----EFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                           .......+++.++..++++.+.+ +...+    ++..++.+.++++.+.+.+.   ++.......+.|.++..  
T Consensus       316 -----~~~~~~~T~~g~pl~~aaa~aaL-e~l~~~~l~~~~~~~~~~l~~~L~~l~~~---~~~~i~~vrg~G~~~~i--  384 (474)
T PLN02624        316 -----KPGEHGSTFGGNPLASAVAMAAL-QVVQDEKLAERSAKLGQELRDQLQKIQKQ---FPKLIKEVRGRGLLNAV--  384 (474)
T ss_pred             -----ccCCcCCCCCCCHHHHHHHHHHH-HHHHhchHHHHHHHHHHHHHHHHHHHHHh---CCCceEEEEeeEEEEEE--
Confidence                 11112222333333333444443 21111    22333333333333333222   23211113455555553  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEe--ecCHHHHHHHHHHHHHHHHHHh
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITF--AVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~--~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                              .++.+.. +. .....+.+.|.++||.+.|+.    .+++|++.  ..+++++++++++|.+++....
T Consensus       385 --------~l~~~~~-~~-~~a~~~~~~L~e~GV~v~p~~----~~~lR~~p~l~~t~e~id~~l~~L~~~l~~~~  446 (474)
T PLN02624        385 --------VLNSPKL-GP-VSAYDVCLKLKERGLLAKPTH----DTIIRLAPPLSISEDELQECSKALSDVLEHDL  446 (474)
T ss_pred             --------EecCCCc-Ch-HHHHHHHHHHHhCCeEEecCC----CCEEEEECCccCCHHHHHHHHHHHHHHHHHHH
Confidence                    2322110 00 123334445678899999863    47899986  4589999999999999987764

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.53  E-value=1.6e-13  Score=120.74  Aligned_cols=188  Identities=14%  Similarity=0.145  Sum_probs=111.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++|.||+|..+..+|... .....+-.   .-+.++||.++ .|+|+||+++++  ++++.   .   
T Consensus       203 ~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~-a~~~~gv~---pDi~t~~K~lg-gG~pigav~~~~--~i~~~---~---  269 (397)
T TIGR03246       203 KGLRELCDRHNALLIFDEVQTGVGRTGELY-AYMHYGVT---PDILTSAKALG-GGFPIGAMLTTT--EIAAH---L---  269 (397)
T ss_pred             HHHHHHHHHcCCEEEEechhhcCCccccch-hhhhcCCC---CCEEEeehhhh-CCcceeEEEEcH--HHHHh---c---
Confidence            478999999999999999999886665422 11111211   22348999976 699999999987  34421   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP---CITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~~  157 (233)
                           .......+++.++...+++++.+ +. .+  ..++.+.++++.+++.+.|+++.   .+.....+.|.++..   
T Consensus       270 -----~~~~~~~t~~~~p~~~aaa~a~l-~~-~~--~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G~~~~i---  337 (397)
T TIGR03246       270 -----KVGTHGTTYGGNPLACAVAGKVL-DL-VN--TPELLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGA---  337 (397)
T ss_pred             -----cCCCcCCCCCCCHHHHHHHHHHH-HH-Hh--hccHHHHHHHHHHHHHHHHHHHHhcCCCeEeeecCceEEEE---
Confidence                 11112223333333332444443 21 11  13467778888888888887642   111112344444332   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEE--eecCHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRIT--FAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~--~~~~~~~l~~~~~~l~~~l~~  228 (233)
                             .+... . .  .....+...|.++||.+.+..    .+++|++  +..+++++++++++|.+++.+
T Consensus       338 -------~~~~~-~-~--~~~~~~~~~l~~~Gv~~~~~g----~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~  395 (397)
T TIGR03246       338 -------VLTEA-Y-Q--GKAKQFVNAAAEEGVIALIAG----PNVVRFAPSLVISDDDIDEGLARFERAIEQ  395 (397)
T ss_pred             -------EEcCc-h-h--hHHHHHHHHHHHCCeEEeecC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                   22110 0 0  123334445567799988632    3789995  445999999999999998865

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.53  E-value=2.5e-13  Score=121.18  Aligned_cols=194  Identities=19%  Similarity=0.155  Sum_probs=112.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++|.||++..|..+|..+ .....+-.+.++   +++|.++ .|+++|++++++  ++++.   .   
T Consensus       243 ~~lr~lc~~~gillI~DEV~tGfgRtG~~f-a~~~~gv~PDiv---~~gK~l~-~G~Pi~av~~~~--~i~~~---~---  309 (443)
T PRK06058        243 PALLEWCRENGVVFIADEVQTGFARTGAWF-ACEHEGIVPDLI---TTAKGIA-GGLPLSAVTGRA--EIMDA---P---  309 (443)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCcChhhh-HHHhcCCCCCEE---EEccccc-CCCccEEEEEcH--HHHhh---c---
Confidence            368999999999999999999987666422 111122222233   5589977 799999999987  44421   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEEEe
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~~  156 (233)
                           .......+++.++...+++++.+ +.-.+   .+..+.++++.+++.+.|++    .+.+.. ..+.|.++.+.+
T Consensus       310 -----~~~~~~~T~~gnpl~~aaa~a~L-~~~~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vrg~G~~~~i~~  379 (443)
T PRK06058        310 -----HPGGLGGTYGGNPVACAAALAAI-ETIEE---DDLVARARQIEALMTDRLRALAAEDDRIGD-VRGRGAMIAIEL  379 (443)
T ss_pred             -----cCCCCCCCCCCCHHHHHHHHHHH-HHHHH---cCHHHHHHHHHHHHHHHHHHHHhhCCcEEe-eeccceEEEEEE
Confidence                 11112233433333333444443 21111   13344444445555555544    232222 467777776522


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEE--eecCHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRIT--FAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~--~~~~~~~l~~~~~~l~~~l~~  228 (233)
                      -++ +       ... ....-...+.+.+.++||.+.|+..|+  +++|+.  +..+++++++++++|.+++++
T Consensus       380 ~~~-~-------~~~-~~~~~~~~l~~~~~~~Gv~~~~~~~~~--~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~  442 (443)
T PRK06058        380 VKP-G-------TTE-PDAELTKALAAAAHAAGVIVLTCGTYG--NVIRLLPPLVIGDELLREGLDVLEAALAD  442 (443)
T ss_pred             ecC-C-------CCC-CcHHHHHHHHHHHHHCCeEEeccCCCC--CEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence            111 0       000 000012334444567899999976665  689995  556999999999999999865

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.53  E-value=5.7e-13  Score=118.75  Aligned_cols=197  Identities=17%  Similarity=0.162  Sum_probs=106.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++|+||+|.+|.++|... .....+..+.++   ++||.++ +|+|+||+++++  ++++.   +   
T Consensus       228 ~~l~~l~~~~g~llI~DEv~~g~gr~G~~~-a~~~~~~~pDii---tlsK~l~-~G~pigav~~~~--~i~~~---~---  294 (443)
T PRK08360        228 KKLKKILDEHGILLVVDEVQSGLGRTGKWF-AIEHFGVEPDII---TLGKPLG-GGLPISATIGRA--EIMDS---L---  294 (443)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCcCccch-hhhhcCCCCCEE---Eeccccc-CCceeEEEEEcH--HHHhh---h---
Confidence            368999999999999999999987766422 211222223343   7799987 899999999987  44421   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           .......+++.++..+.++++.+ +.- .++..++.++.-...++.+.+...+.+.+. ...+.|.++ -     
T Consensus       295 -----~~~~~~~T~~~~p~~~aaa~a~l-~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~-~vrg~Gl~~-g-----  361 (443)
T PRK08360        295 -----PPLAHAFTLSGNPVASAAALAVI-EEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIG-DVRGIGLMI-G-----  361 (443)
T ss_pred             -----cCCCCCCCCCcCHHHHHHHHHHH-HHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCee-eeeccceEE-E-----
Confidence                 11112223333333332333333 211 112222322222222233322222233222 234444443 3     


Q ss_pred             Ccccccccccc--cCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEE--EeecCHHHHHHHHHHHHHHHHHHhh
Q 047983          160 DKCLLKLNYSL--LEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRI--TFAVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       160 ~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl--~~~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                          +.+....  ..........+...+.++||.+.+..    .+.+|+  ++..++++++++++++.+.+++..+
T Consensus       362 ----ie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~----~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~~~  429 (443)
T PRK08360        362 ----VDLVKDRETKERAYEEAAKVVWRAWELGLIVTFFS----GNVLRIQPPLTIEKEVLDEGLDILEEAIEDVEE  429 (443)
T ss_pred             ----EEEecCCcccCccHHHHHHHHHHHHHCCeEEeecC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence                2221110  00000123345556678899987532    367899  4445999999999999999987643

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.52  E-value=9.2e-13  Score=115.86  Aligned_cols=201  Identities=15%  Similarity=0.075  Sum_probs=117.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|+++|+++|+|++|+...+    +..+..++   .-++..|.+|.++.+|  +||+++++  .+++++.-....
T Consensus       177 ~~i~~~~~~~~~~~ivD~a~~~~~~----~~~~~~~~---~d~~~~s~~K~~gp~G--~G~l~~~~--~~~~~~~~~~~~  245 (398)
T TIGR03392       177 ARAITLAHQYGAVVVVDGAQGVVHG----PPDVQALD---IDFYAFSGHKLYGPTG--IGVLYGKT--ELLEAMPPWQGG  245 (398)
T ss_pred             HHHHHHHHHcCCEEEEEhhhhcCCC----CCChhhcC---CCEEEEecccccCCCc--eEEEEEcH--HHHhhCCCeecC
Confidence            3689999999999999999975322    12222222   2377888889888776  89999887  444321100000


Q ss_pred             -hh----hhHH-hhhh-hhhhccCcchH-H-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccE
Q 047983           81 -SI----SLNM-RMDD-YLLLSESVYTT-V-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSM  151 (233)
Q Consensus        81 -~~----~~~~-~~~~-~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~  151 (233)
                       +.    +... .... ...+..+++.. . .++...++-..+.-..+.+++..+.++++.+.|++++++..+..+. +.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~-~~  324 (398)
T TIGR03392       246 GKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCPG-SS  324 (398)
T ss_pred             CceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC-Cc
Confidence             00    0000 0000 00111122222 1 2333222211122234567778888888888888877665432343 44


Q ss_pred             EEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC--------CCCcEEEEeec--CHHHHHHHHHH
Q 047983          152 FVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG--------LKDWLRITFAV--EPSAFEIGLGR  221 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--------~~~~~Rl~~~~--~~~~l~~~~~~  221 (233)
                      .++         +.++     ++ +. +.+...|+++||.+.+|..+.        ..+++|+|+..  ++++++..++.
T Consensus       325 i~~---------~~~~-----~~-~~-~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~  388 (398)
T TIGR03392       325 LLA---------FDFA-----GV-HH-SDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDA  388 (398)
T ss_pred             EEE---------EEeC-----Cc-CH-HHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHH
Confidence            454         2332     22 23 345555778899999988553        35799999985  88999999999


Q ss_pred             HHHHHHHH
Q 047983          222 MKAFYYRH  229 (233)
Q Consensus       222 l~~~l~~~  229 (233)
                      |+++++..
T Consensus       389 l~~~~~~~  396 (398)
T TIGR03392       389 VGAALELL  396 (398)
T ss_pred             HHHHHHHh
Confidence            99887654

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.52  E-value=4.2e-13  Score=119.04  Aligned_cols=197  Identities=14%  Similarity=0.081  Sum_probs=116.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++|+||+|..|..+|..    .+....+.+..+.++||.++ +|+|+||+++++  ++++.   .   
T Consensus       222 ~~l~~l~~~~g~llI~DEv~tG~gr~G~~----~a~~~~gv~pDi~tlsK~l~-~G~pigav~~~~--~i~~~---~---  288 (425)
T PRK07495        222 KALRELCDQHGILLIADEVQTGFARTGKL----FAMEHHEVAADLTTMAKGLA-GGFPLAAVTGRA--EIMDA---P---  288 (425)
T ss_pred             HHHHHHHHHcCCEEEEechhhcCCcCCCc----eeecccCCCCCEEeehhhhc-CCccceEEEEcH--HHHhc---c---
Confidence            36899999999999999999998666532    22333344556889999965 799999999987  44431   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHH--HHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVP--QILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                           .......+++.++...+++.+  .+++.+ ..++.+++.+.++++.+.+.+.   ++.+.. .... |+++|   
T Consensus       289 -----~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~---~~~i~~-vrG~-Gl~~~---  355 (425)
T PRK07495        289 -----GPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQRLASLRET---VPEIAD-IRGP-GFMNA---  355 (425)
T ss_pred             -----CCCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhh---CCCeee-eecC-ceEEE---
Confidence                 111122233333444332222  223222 2344455555555555444333   333221 2222 88899   


Q ss_pred             CCCccccccccccc-CCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHHhh
Q 047983          158 SEDKCLLKLNYSLL-EGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       158 ~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                            +.+..... .+.......+.+.+.++||.+.+....  .+.+|+...  .+++++++++++|.+.+++.+.
T Consensus       356 ------iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~--~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~~  424 (425)
T PRK07495        356 ------VEFNDADSGLPSAEFANRVRLKALEKGLILLTCGVH--GNVIRFLAPITIQDDVFAEALDILEASILEASA  424 (425)
T ss_pred             ------EEEecCCCCCccHHHHHHHHHHHHHCCeEEeecCCC--CCEEEEeCCCccCHHHHHHHHHHHHHHHHHHhc
Confidence                  54422110 000011344556667889999764222  367888655  4899999999999999987653

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.51  E-value=9.2e-13  Score=114.00  Aligned_cols=201  Identities=17%  Similarity=0.095  Sum_probs=114.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccch--hh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGV--AF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~--~~   78 (233)
                      ++|.++|+++|+++|+|++|..    |..+.++...+.   -+++.|.+|.++.|. ++||++.++  ++++.+..  ..
T Consensus       144 ~~i~~~a~~~~~~li~D~~~~~----g~~~~~~~~~~~---d~~~~s~~K~l~~p~-g~G~l~~~~--~~~~~~~~~~~~  213 (356)
T cd06451         144 EGIGALAKKHDALLIVDAVSSL----GGEPFRMDEWGV---DVAYTGSQKALGAPP-GLGPIAFSE--RALERIKKKTKP  213 (356)
T ss_pred             HHHHHHHHhcCCEEEEeeehhc----cCccccccccCc---cEEEecCchhccCCC-CcceeEECH--HHHHHHHhcCCC
Confidence            4689999999999999998863    212222222222   255778899977653 589999987  34432110  00


Q ss_pred             hhhhhhHHhhhhhh----hhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC--ccE
Q 047983           79 FHSISLNMRMDDYL----LLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE--GSM  151 (233)
Q Consensus        79 ~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~  151 (233)
                      .....-......+.    ....+++... .++.+.++.-....+++..+..+++++++.+.|+++ ++....++.  ++.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~  292 (356)
T cd06451         214 KGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL-GLKLLAKPELRSPT  292 (356)
T ss_pred             CceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCc
Confidence            00000000000110    1111122221 233333222223345677788889999999999876 444322222  455


Q ss_pred             EEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 047983          152 FVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFY  226 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l  226 (233)
                      ++|         +.++.    +. +..+++..+.++.||.+.||..+...+++|+++..  ++++++.+++.|.+++
T Consensus       293 ~~~---------~~~~~----~~-~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~  355 (356)
T cd06451         293 VTA---------VLVPE----GV-DGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEAL  355 (356)
T ss_pred             eEE---------EECCC----CC-CHHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            566         43432    11 24455544443449999998765445799999984  7899999999998865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.51  E-value=3.1e-13  Score=119.04  Aligned_cols=188  Identities=17%  Similarity=0.177  Sum_probs=112.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++|+||+|..+.++|... .....+..+.++   ++||.++..++|+||+++++  ++++.  +    
T Consensus       210 ~~l~~l~~~~~~lli~DEv~~g~g~~G~~~-~~~~~~~~~di~---~~gK~l~~g~~~ig~v~~~~--~i~~~--~----  277 (401)
T TIGR01885       210 KKVRELCTKHNVLLIADEIQTGLGRTGKLL-CVDHENVKPDIV---LLGKALSGGVYPVSAVLADD--DVMLT--I----  277 (401)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCCccchhh-HHhhcCCCCCEE---EeeccccCCCCCcEEEEEcH--HHHhh--c----
Confidence            378999999999999999999876666321 221112222333   57899888779999999987  44431  1    


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC-CcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP-CITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~g~~~~~~~~~  159 (233)
                           .......+++.++..+..+.+.+ +.-.++   ...+..++..+++.+.|++++ .+.....+.|.++..     
T Consensus       278 -----~~~~~~~t~~~~p~~~~aa~a~L-~~i~~~---~l~~~~~~~~~~~~~~L~~l~~~~~~~~~g~g~~~~i-----  343 (401)
T TIGR01885       278 -----KPGEHGSTYGGNPLACAVAVAAL-EVLEEE---KLAENAEKLGEIFRDQLKKLPKPIITEVRGRGLLNAI-----  343 (401)
T ss_pred             -----cCCCCCCCCCCCHHHHHHHHHHH-HHHHhc---cHHHHHHHHHHHHHHHHHhccCCceeEEeecCeeEEE-----
Confidence                 11011122333333332343333 211111   244566666788888888763 221112455666653     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l  226 (233)
                           .++.+.. +  .+...+...|.++||.+.|+.    .+.+|++..  .+++++++++++|.+++
T Consensus       344 -----~~~~~~~-~--~~~~~l~~~l~~~Gv~v~~~~----~~~lRi~p~l~~t~~~i~~~l~~l~~~l  400 (401)
T TIGR01885       344 -----VIDESKT-G--RTAWDLCLKLKEKGLLAKPTH----GNIIRLAPPLVITEEQLDEGLEIIKKVI  400 (401)
T ss_pred             -----EeccCcc-h--hHHHHHHHHHHhCCEEEEecC----CCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence                 2332110 0  133444445568899998853    478999875  48999999999998875

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.50  E-value=2.6e-13  Score=120.37  Aligned_cols=186  Identities=13%  Similarity=0.096  Sum_probs=115.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCC--ccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNT--HFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~--~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|.++|++||++||+||+|+.++++..  .......+. .++.|+++||||.+|..|   |++++++  ++++   .++
T Consensus       269 ~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~-~di~ii~~TLsKA~G~~G---Gfi~gs~--~~~~---~l~  339 (476)
T PLN02955        269 EELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCE-ADVDLCVGTLSKAAGCHG---GFIACSK--KWKQ---LIQ  339 (476)
T ss_pred             HHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCC-CCCcEEEEeCccchhccC---ceeecHH--HHHH---HHH
Confidence            4789999999999999999998888753  222222222 367799999999998888   9999987  4442   220


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                             +..+.+...+..++..+ ++++++. ....  -...++.+++|.+++.+.+    ++..   + +.++ .   
T Consensus       340 -------~~~~~~ifStalpp~~aaa~laal~-l~~~--~~~~r~~L~~n~~~fr~~~----G~~~---~-sPI~-p---  397 (476)
T PLN02955        340 -------SRGRSFIFSTAIPVPMAAAAYAAVV-VARK--EKWRRKAIWERVKEFKALS----GVDI---S-SPII-S---  397 (476)
T ss_pred             -------HhCCCCeecccccHHHHHHHHHHHH-HHhc--CHHHHHHHHHHHHHHHHhc----CCCC---C-CCEE-E---
Confidence                   11122222232222332 3444431 1111  1246788888888888742    3321   1 2222 2   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                            +.++.+      .....+.+.|.++||.+.+...-..   ...+|+++..  ++++++.+++.|.++....
T Consensus       398 ------I~ig~~------~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~~  462 (476)
T PLN02955        398 ------LVVGNQ------EKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDFD  462 (476)
T ss_pred             ------EEeCCH------HHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhhh
Confidence                  224322      1444556667788999987432211   3579999986  8999999999998776543

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.50  E-value=1.5e-12  Score=114.58  Aligned_cols=200  Identities=16%  Similarity=0.148  Sum_probs=118.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++|+|++|+...    .+..+.   ..+..+++.|++|.+|.+|  +|++.+++  .+++.+.-....
T Consensus       179 ~~i~~~~~~~~~~~ivD~a~~~g~----~~~~~~---~~~~d~~~~s~~K~~gp~G--~g~l~~~~--~~~~~~~~~~~g  247 (403)
T TIGR01979       179 EEIAKLAHQVGAKVLVDGAQAVPH----MPVDVQ---ALDCDFYVFSGHKMYGPTG--IGVLYGKE--ELLEQMPPFLGG  247 (403)
T ss_pred             HHHHHHHHHcCCEEEEEchhhcCc----cccCcc---ccCCCEEEEecccccCCCC--ceEEEEch--HHHhcCCCeecC
Confidence            478999999999999999997532    112222   2234588999999888777  99999886  344321100000


Q ss_pred             --hhh---h-HHhhhh-hhhhccCcchH-H-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC---
Q 047983           81 --SIS---L-NMRMDD-YLLLSESVYTT-V-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE---  148 (233)
Q Consensus        81 --~~~---~-~~~~~~-~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---  148 (233)
                        ..+   . ...+.. ...+..+.++. . .++...++...+.-.++.+++..+.++.+.+.|++++++.. ..|.   
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~-~~~~~~~  326 (403)
T TIGR01979       248 GEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRI-YGPRDAE  326 (403)
T ss_pred             CCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE-eCCCCcc
Confidence              000   0 000000 00011111222 1 33333332111112456778888888999999988776664 3332   


Q ss_pred             --ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcc--------cCCCCcEEEEeec--CHHHHH
Q 047983          149 --GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGIT--------VGLKDWLRITFAV--EPSAFE  216 (233)
Q Consensus       149 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~--------f~~~~~~Rl~~~~--~~~~l~  216 (233)
                        ++++.+          .++     +.  +...+.+.|+++||.+.+|..        ++..+++|+|++.  ++++++
T Consensus       327 ~~~~~v~~----------~~~-----~~--~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~  389 (403)
T TIGR01979       327 DRGGIISF----------NVE-----GV--HPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDID  389 (403)
T ss_pred             ccCceEEE----------EeC-----Cc--CHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHH
Confidence              455444          222     11  233455678899999998762        3446799999995  788999


Q ss_pred             HHHHHHHHHHHHH
Q 047983          217 IGLGRMKAFYYRH  229 (233)
Q Consensus       217 ~~~~~l~~~l~~~  229 (233)
                      .+++.|+++++.+
T Consensus       390 ~l~~~l~~~~~~~  402 (403)
T TIGR01979       390 ALVEALKKVRKFF  402 (403)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998877653

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.50  E-value=6.2e-13  Score=117.07  Aligned_cols=186  Identities=11%  Similarity=0.046  Sum_probs=109.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccc-cccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFV-PMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|+||+|..+.++|.... ......+ +.++    +||.++...+|+||+++++  ++++.   .  
T Consensus       211 ~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~-D~~~----~~K~l~gg~~~ig~v~~~~--~~~~~---l--  278 (401)
T PRK00854        211 TRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEA-DVTL----IGKALSGGFYPVSAVLSNS--EVLGV---L--  278 (401)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCC-CEEE----ecccccCCccCeEEEEEcH--HHHhc---c--
Confidence            3689999999999999999998766553110 0111122 2222    4688766558999999987  44421   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccCCCccEEEEEecC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCIT-CPKKPEGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~g~~~~~~~~  158 (233)
                            .......+++.++..+.++++.+ + ..++  ....+.++++.+++.+.|++++... ....+.|.++.+    
T Consensus       279 ------~~~~~~~t~~~~~~~~aa~~a~L-~-~l~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~g~~~~i----  344 (401)
T PRK00854        279 ------KPGQHGSTFGGNPLACAVARAAL-K-VLTE--EGMIENAAEMGAYFLEGLRSIRSNIVREVRGRGLMLAV----  344 (401)
T ss_pred             ------cCCCCCCCCCcCHHHHHHHHHHH-H-HHHH--cCHHHHHHHHHHHHHHHHHhhccCceEEEeccceEEEE----
Confidence                  11112222333333332444443 2 1111  2356778888888888887753211 112455666655    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~  227 (233)
                           ...+..    . +..+++.. |.++||.+.+..    .+++|++..  .+++++++++++|++++.
T Consensus       345 -----~~~~~~----~-~~~~~~~~-L~~~GV~v~~~~----~~~lR~~p~~~~t~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        345 -----ELEPEA----G-GARQYCEA-LKERGLLAKDTH----DHTIRLAPPLVITREQVDWALEQIAKVLA  400 (401)
T ss_pred             -----EEecCc----h-hHHHHHHH-HHHCCeEEecCC----CCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence                 111110    1 23445555 456799997632    379999964  589999999999998764

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.50  E-value=1e-12  Score=116.69  Aligned_cols=190  Identities=12%  Similarity=0.103  Sum_probs=108.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|+||+++.|..+|... .....+.+  .   +.++||.++..|+|+|++++++  ++ +  .+.  
T Consensus       222 ~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~P--D---i~t~~K~l~~~G~pigav~~~~--~i-~--~~~--  289 (425)
T PRK09264        222 QRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITP--D---IVTLSKSISGYGLPMALVLIKP--EL-D--VWK--  289 (425)
T ss_pred             HHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCC--C---EEEeccccCCCccceEEEEEch--hh-h--ccC--
Confidence            478999999999999999999886665321 11112233  2   3477999887799999999987  22 1  111  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEEE
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~  155 (233)
                             ......+++.++.+.+++++.+-..-.+   .+..+.++++.+++.+.|++    .+.+.. .....|.++| 
T Consensus       290 -------~~~~~~T~~gnp~~~aaa~a~l~~~~~~---~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~-~vrg~Gl~~~-  357 (425)
T PRK09264        290 -------PGEHNGTFRGNNLAFVTATAALEEYWSD---DAFEKEVKAKGELVRERLEEIAAKYPGLGA-EVRGRGMMQG-  357 (425)
T ss_pred             -------CCccCCCCCCCHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHhCCCcee-cceecccEEE-
Confidence                   1111122332222222332332010001   12333333444444443332    332211 2233577778 


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHHh
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~  230 (233)
                              +.++..      .....+.+.+.++||.+.|...++  +.+|++..  .+++++++++++|.+.+++..
T Consensus       358 --------i~l~~~------~~~~~l~~~~~~~Gv~~~~~~~~~--~~lr~~p~l~~t~~ei~~~~~~l~~~l~~~~  418 (425)
T PRK09264        358 --------IDFGDG------ELAGKIAAEAFENGLIIETSGPED--EVVKLLPPLTIDEEELEEGLDILEEAVAEVL  418 (425)
T ss_pred             --------EEecCh------HHHHHHHHHHHHCCCEEeccCCCC--CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence                    555321      134455666778899998854332  66777755  489999999999999998764

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.49  E-value=3.1e-13  Score=119.99  Aligned_cols=203  Identities=14%  Similarity=0.079  Sum_probs=111.8

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++|++||+++|+||+|..+..++........+.+ |    +.++||.++ .|+++|++++++  ++++.+...    
T Consensus       222 ~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~~~~p-D----i~~~gK~l~-~G~p~ga~~~~~--~i~~~~~~~----  289 (426)
T PRK00062        222 GLRELCDEHGALLIFDEVMTGFRVALGGAQGYYGVTP-D----LTTLGKIIG-GGLPVGAFGGRR--EIMEQLAPL----  289 (426)
T ss_pred             HHHHHHHHcCCEEEEeechhccccCCccHHHHhCCCc-c----hHhhhhHhh-CCCcceeeeEHH--HHHHhhccC----
Confidence            6899999999999999999988433211111111222 2    568999977 789999999987  344211000    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEK-TEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                          .......+++.++..++++++.+ +. ..++..++.++.....++.+.+..++.+... -..+.|.++.+.+..+.
T Consensus       290 ----~~~~~~~T~~~~p~~~aaa~a~L-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~vrg~G~~~~i~l~~~~  363 (426)
T PRK00062        290 ----GPVYQAGTLSGNPLAMAAGLATL-KLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPL-TVNRVGSMFGLFFTDEP  363 (426)
T ss_pred             ----CCceecccCcCCHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCce-EEEEecceEEEEEecCC
Confidence                01111122333333332444443 21 1223445555555555555555444453222 13466777765222111


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                      +.... +. .. +..+....+...+.++||.+.|.. +   +-+++++..++++++++++.|.+++++.
T Consensus       364 ~~~~~-~~-~~-~~~~~~~~i~~~l~~~Gv~v~~~~-~---~~~~~~~~~t~~ei~~~~~~l~~~l~~~  425 (426)
T PRK00062        364 VTNYA-DA-KK-SDTERFARFFHAMLDEGVYLAPSQ-F---EAGFVSAAHTDEDIEKTLEAARKAFAAL  425 (426)
T ss_pred             Ccchh-hh-cc-ccHHHHHHHHHHHHHCCeEeecCC-c---CceeeeccCCHHHHHHHHHHHHHHHHhh
Confidence            10000 00 00 000112455566668899998842 1   3467887779999999999999998764

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.49  E-value=4.9e-13  Score=113.21  Aligned_cols=186  Identities=19%  Similarity=0.183  Sum_probs=133.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCC-cccccccc-CCccCEEEEccCccccCCCCceEEEEE--ecCCCccccccch
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNT-HFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGWLV--TSDPNGILQDLGV   76 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~-~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~R~G~~~--~~~~~~~~~~~~~   76 (233)
                      ++|+++.++.+.+.+.|-+|.+|..+-. ....+..+ .....+++..|+||.|++.|-|+|.+.  +++. +...  .+
T Consensus       195 ~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~-~~a~--~v  271 (396)
T COG1448         195 QELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDA-EEAD--RV  271 (396)
T ss_pred             HHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCH-HHHH--HH
Confidence            3689999999999999999999876532 22233322 223448999999999999999999944  3332 1111  11


Q ss_pred             hhhhhhhhHHhhhhhh--hhccCcchHHHHHHHHhhhc-----HHHHHHHHHHHHHHHHHHHHHHhhcC-C--CcccccC
Q 047983           77 AFFHSISLNMRMDDYL--LLSESVYTTVGAVPQILEKT-----EEEFFSKITDILREAADICCDRLKEI-P--CITCPKK  146 (233)
Q Consensus        77 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~-~--~~~~~~~  146 (233)
                      .        ..+....  ..+.++...+..++.+|++.     +++++..+++++.+.|..+.+.|++. +  .+. +..
T Consensus       272 ~--------sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~-~i~  342 (396)
T COG1448         272 L--------SQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFD-FII  342 (396)
T ss_pred             H--------HHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccc-hHh
Confidence            1        2222211  23333333336777777654     45788899999999999999999882 2  344 367


Q ss_pred             CCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHHHHH
Q 047983          147 PEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRMKAF  225 (233)
Q Consensus       147 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l~~~  225 (233)
                      .+.|||.+           ..+        +.+.+.++.+++||.++..+        |||++. ++++++.+.+.|.++
T Consensus       343 ~Q~GMFsy-----------~Gl--------s~~QV~rLree~~IY~v~sG--------Ri~vaGl~~~ni~~va~ai~~v  395 (396)
T COG1448         343 SQRGMFSY-----------TGL--------SPEQVDRLREEFGIYLVASG--------RINVAGLNTSNIDYVAKAIAAV  395 (396)
T ss_pred             hcCceeec-----------CCC--------CHHHHHHHHHhccEEEecCC--------eeeeccCChhhHHHHHHHHHhh
Confidence            88899999           544        78999999999999998643        999997 899999999888765

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.47  E-value=5.2e-12  Score=109.72  Aligned_cols=198  Identities=12%  Similarity=0.096  Sum_probs=117.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCcccc-CCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|+|.+++.    +..+.++..++.   -+++.|++|.+ +.+|  +||+++++  ..++++.-. .
T Consensus       149 ~~I~~l~~~~g~~livD~~~~~----g~~~~~~~~~~~---D~~~~s~~K~l~~p~G--~G~l~~~~--~~~~~~~~~-~  216 (363)
T TIGR02326       149 EAVAKLAHRHGKVTIVDAMSSF----GGIPIDIAELHI---DYLISSANKCIQGVPG--FGFVIARQ--AELAACKGN-A  216 (363)
T ss_pred             HHHHHHHHHcCCEEEEEccccc----cCcccchhhcCc---cEEEecCccccccCCc--ceEEEECH--HHHHHhhcC-C
Confidence            3799999999999999988763    222334443333   28889999975 5567  69999987  333211000 0


Q ss_pred             hh--hhhHHhhh------hhhhhccCcchHHHHHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHhhcCCCcccccC--CC
Q 047983           80 HS--ISLNMRMD------DYLLLSESVYTTVGAVPQILEKTEE-EFFSKITDILREAADICCDRLKEIPCITCPKK--PE  148 (233)
Q Consensus        80 ~~--~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~  148 (233)
                      ..  .++.....      ....++.+.+.+ .++.+.++.-.. ...++.+++++++++++.+.|+++ ++..+.+  ..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~-~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~  294 (363)
T TIGR02326       217 RSLSLDLYDQWRCMEDNHGKWRFTSPTHVV-HAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQ  294 (363)
T ss_pred             CceeecHHHHHHHHhccCCCCCCCCcHHHH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccC
Confidence            00  00000000      001112222222 333333222112 235667899999999999999886 4332222  23


Q ss_pred             ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEe-ec-CHHHHHHHHHHHHHHH
Q 047983          149 GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITF-AV-EPSAFEIGLGRMKAFY  226 (233)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~-~~-~~~~l~~~~~~l~~~l  226 (233)
                      ++...|         +.++..  +.+  +...+.+.|+++||.+.||..+. .+++|++. +. +.++++.+++.|.+++
T Consensus       295 ~~~~~~---------~~~~~~--~~~--~~~~v~~~L~~~gi~v~~g~~~~-~~~iRi~~~~~~~~edv~~~l~~l~~~l  360 (363)
T TIGR02326       295 SPIITS---------FYSPED--PDY--RFADFYQRLKEQGFVIYPGKVSQ-VDCFRIGNIGEVDAADITRLLTAIGKAM  360 (363)
T ss_pred             CceEEE---------EECCCC--CCC--CHHHHHHHHHHCCEEEECCcCCC-CCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            555666         444321  011  34456666778899999987663 47999995 53 8899999999998875

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.46  E-value=1.9e-12  Score=114.45  Aligned_cols=188  Identities=12%  Similarity=0.083  Sum_probs=113.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|+||+++.|..+|... .....+.++     +.++||.++..|+|+||+++++  ++ +  .+   
T Consensus       218 ~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PD-----i~~~~K~lg~~G~pigav~~~~--~~-~--~~---  284 (412)
T TIGR02407       218 QRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPD-----IVCLSKSISGYGLPLALTLIKP--EL-D--VW---  284 (412)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCC-----EEEechhccCCccceeEEEEch--hh-h--cc---
Confidence            368999999999999999999886655321 112223332     4468999554499999999987  22 2  11   


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHH---HHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEE
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVG---AVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~  155 (233)
                            .......+++.++...++   ++..+++++ ..++..++.+.++++.+.+.+.+   +... ...+..|+++| 
T Consensus       285 ------~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~---~~~~-~~vrg~Gl~~~-  353 (412)
T TIGR02407       285 ------KPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIVAEY---PELI-KQVRGRGLMQG-  353 (412)
T ss_pred             ------CCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhC---CCce-EeeecceeEEE-
Confidence                  111112233322222222   222223222 33555556666666655554443   3222 13455689999 


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHH
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~  228 (233)
                              +.++.+      +....+...+.++||.+.+...+  .+.+|++...  +++++++++++|.+.+++
T Consensus       354 --------l~l~~~------~~~~~~~~~~~~~Gv~v~~~~~~--~~~lr~~p~l~~t~~~i~~~~~~l~~~l~~  412 (412)
T TIGR02407       354 --------IECGDG------DLAGKIAKAAFENGLIIETSGPN--DEVIKLLPPLTIDEETLQQGLDILEQAVEE  412 (412)
T ss_pred             --------EEecCh------HHHHHHHHHHHHCCCEEeccCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence                    666422      13445556667889999874322  3678987774  899999999999998853

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PLN02721 threonine aldolase

Probab=99.45  E-value=4.3e-12  Score=109.52  Aligned_cols=186  Identities=17%  Similarity=0.147  Sum_probs=104.7

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccC-CccCEEEEccCccccCCCCceEEE-EEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGW-LVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~-~~~~~~~~~~~~~~~~~~   79 (233)
                      +|+++|++||++||+||+|......... .+..... ..+  .++.|+||.++.   ++|| +++++  ++++.   .  
T Consensus       162 ~l~~l~~~~g~~livD~a~~~~~~~~~~-~~~~~~~~~~d--~~~~s~sK~l~~---~~G~~~~~~~--~~~~~---~--  228 (353)
T PLN02721        162 KVGELAKRHGLKLHIDGARIFNASVALG-VPVHRLVKAAD--SVSVCLSKGLGA---PVGSVIVGSK--SFIRK---A--  228 (353)
T ss_pred             HHHHHHHHcCCEEEEEchhhhcchhhhC-CCHHHHhhhCC--EEEEecccccCC---ceeeEEecCH--HHHHh---H--
Confidence            7899999999999999998632211001 1121111 223  334579998764   4687 45554  34321   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-ccCCCccEEEEEecC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITC-PKKPEGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~g~~~~~~~~  158 (233)
                            ..+......+...... .+.+.+.  ..+++...+++ ..++++.+.+.|++++++.. +.+|. +.++|    
T Consensus       229 ------~~~~~~~~~~~~~~~~-~~~~~~~--~l~~~~~~~~~-~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~~~----  293 (353)
T PLN02721        229 ------KRLRKTLGGGMRQVGV-LAAAALV--ALQENVPKLED-DHKKAKLLAEGLNQIKGLRVNVAAVE-TNIVY----  293 (353)
T ss_pred             ------HHHHHhcCCCeehhHH-HHHHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHhCCCcEEecCCcc-ceEEE----
Confidence                  1122211111111111 1122221  12333343333 35678899999988766632 23454 45688    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~  228 (233)
                           ++++...  +.  +.+.+.+.|.++||.+.|+.    .+++|++++.  +++++++++++|++++..
T Consensus       294 -----~~~~~~~--~~--~~~~~~~~L~~~gi~v~~~~----~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~  352 (353)
T PLN02721        294 -----FDITDGS--RI--TAEKLCKSLEEHGVLLMPGN----SSRIRVVTHHQISDSDVQYTLSCFQQAALT  352 (353)
T ss_pred             -----EEccCCc--cc--cHHHHHHHHHhCCcEEecCC----CceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence                 5554210  11  33444555568899999974    4789999973  899999999999987753

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.44  E-value=9.5e-12  Score=110.06  Aligned_cols=191  Identities=15%  Similarity=0.152  Sum_probs=114.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCc-cccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGH-LVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|+|++|.. +.+.+..+.++.     ...+++.|+||.+  +|.|.||++++++ .+.        
T Consensus       183 ~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-----~~di~~~S~~K~l--~g~~gg~i~~~~~-~~~--------  246 (416)
T PRK00011        183 KRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-----HADVVTTTTHKTL--RGPRGGLILTNDE-ELA--------  246 (416)
T ss_pred             HHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-----CCcEEEecCCcCC--CCCCceEEEeCCH-HHH--------
Confidence            4789999999999999999863 333332222222     1237799999964  7889999999752 233        


Q ss_pred             hhhhhHHhhhhhhh---hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           80 HSISLNMRMDDYLL---LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        80 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                            .+++....   .+........++...+.....+++++.+++++++++++.+.|+++ ++..+..+..++++|  
T Consensus       247 ------~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~--  317 (416)
T PRK00011        247 ------KKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER-GFRVVSGGTDNHLVL--  317 (416)
T ss_pred             ------HHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeeeecCCCCeEEE--
Confidence                  22222211   111111121222211112223456888899999999999999886 444321112348888  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCc-ccC-----CCCcEEEEe------ecCHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGI-TVG-----LKDWLRITF------AVEPSAFEIGLGRMKA  224 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~-~f~-----~~~~~Rl~~------~~~~~~l~~~~~~l~~  224 (233)
                             +.++..   +.  +.+.+.+.|+++||.+..+. .+.     ....+|++.      +.+.++++..++.|++
T Consensus       318 -------i~~~~~---~~--~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~  385 (416)
T PRK00011        318 -------VDLRSK---GL--TGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIAD  385 (416)
T ss_pred             -------EeCccc---CC--CHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHH
Confidence                   444311   11  34456677788999997432 121     145789854      2257889999999988


Q ss_pred             HHHH
Q 047983          225 FYYR  228 (233)
Q Consensus       225 ~l~~  228 (233)
                      ++..
T Consensus       386 ~~~~  389 (416)
T PRK00011        386 VLDN  389 (416)
T ss_pred             HHhc
Confidence            7665

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.41  E-value=1.9e-11  Score=108.41  Aligned_cols=203  Identities=11%  Similarity=0.090  Sum_probs=119.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|+++|+++|+|++|..    +..+..+..+   +.-+++.|++|.+|.+|  +||+++++  .+++++.-....
T Consensus       193 ~~I~~l~~~~g~~vivD~a~~~----g~~~~~~~~~---~~d~~~~s~~K~~gp~G--~G~l~~~~--~~~~~~~p~~~g  261 (424)
T PLN02855        193 EDIVHWAHAVGAKVLVDACQSV----PHMPVDVQTL---GADFLVASSHKMCGPTG--IGFLWGKS--DLLESMPPFLGG  261 (424)
T ss_pred             HHHHHHHHHcCCEEEEEhhhhc----CCcCCCchhc---CCCEEEeecccccCCCc--cEEEEEch--hhhhcCCCEecC
Confidence            3789999999999999999963    2222223222   23377999999877666  89999987  444321100000


Q ss_pred             -----hhhhH-Hhhhh-hhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC---
Q 047983           81 -----SISLN-MRMDD-YLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE---  148 (233)
Q Consensus        81 -----~~~~~-~~~~~-~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---  148 (233)
                           ..... ..+.. ...+..+++...  .+++..++...+.-.++.+++.++.++.+.+.|++++++..+.+..   
T Consensus       262 ~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~  341 (424)
T PLN02855        262 GEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEG  341 (424)
T ss_pred             CCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccc
Confidence                 00000 00000 011222223322  4444444322233566777888888889999988876665432211   


Q ss_pred             --ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhcc-CEEEECCccc--------CCCCcEEEEeec--CHHHH
Q 047983          149 --GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEE-SIIVLPGITV--------GLKDWLRITFAV--EPSAF  215 (233)
Q Consensus       149 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-gi~v~pg~~f--------~~~~~~Rl~~~~--~~~~l  215 (233)
                        .+.++.         +.++     ++  +.+.+.+.|.++ ||.+..|...        +..+++|+|+..  +++++
T Consensus       342 ~~r~~~v~---------~~~~-----~~--~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di  405 (424)
T PLN02855        342 VGRAALCA---------FNVE-----GI--HPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEV  405 (424)
T ss_pred             cCcccEEE---------EEEC-----Cc--CHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHH
Confidence              122333         2332     12  334455556555 9999988743        225789999985  89999


Q ss_pred             HHHHHHHHHHHHHHh
Q 047983          216 EIGLGRMKAFYYRHA  230 (233)
Q Consensus       216 ~~~~~~l~~~l~~~~  230 (233)
                      +..++.|+++++...
T Consensus       406 ~~l~~~l~~~~~~~~  420 (424)
T PLN02855        406 DAFIHALKDTIAFFS  420 (424)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999887754

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.41  E-value=2.3e-11  Score=107.32  Aligned_cols=198  Identities=14%  Similarity=0.085  Sum_probs=115.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh-
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF-   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~-   79 (233)
                      ++|.++|+++|+++++|++|+...    .+..+...   +.-+++.|++|.+|.+|  +||+.+++  .+++.+.-... 
T Consensus       184 ~~i~~~~~~~~~~vivD~a~~~g~----~~~~~~~~---~~D~~~~s~~K~~gp~G--~G~l~~~~--~~~~~~~~~~~g  252 (406)
T PRK09295        184 AEMIALAHQHGAKVLVDGAQAVMH----HPVDVQAL---DCDFYVFSGHKLYGPTG--IGILYVKE--ALLQEMPPWEGG  252 (406)
T ss_pred             HHHHHHHHHcCCEEEEEcccccCc----cccCchhc---CCCEEEeehhhccCCCC--cEEEEEch--HhHhhCCCcccC
Confidence            378999999999999999997632    22233222   23388899999878777  79999987  34332110000 


Q ss_pred             ----hhhhhHH--hhhh-hhhhccCcchH-H-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC--
Q 047983           80 ----HSISLNM--RMDD-YLLLSESVYTT-V-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE--  148 (233)
Q Consensus        80 ----~~~~~~~--~~~~-~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--  148 (233)
                          ...+...  .+.. ...+..+++.. . .++...++...+.-.+..+++.++.++++.+.|++++++.. ..|.  
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~-~~~~~~  331 (406)
T PRK09295        253 GSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTL-YGPQNR  331 (406)
T ss_pred             CceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE-eCCCCC
Confidence                0000000  0000 00111122222 2 33333332212222456677888888899999888766654 2332  


Q ss_pred             ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC--------CCCcEEEEeec--CHHHHHHH
Q 047983          149 GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG--------LKDWLRITFAV--EPSAFEIG  218 (233)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--------~~~~~Rl~~~~--~~~~l~~~  218 (233)
                      ++++.+          .++     +.  +.+.+...|.++||.+..|+.+.        ..+++|+|+..  ++++++..
T Consensus       332 ~~iv~~----------~~~-----~~--~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l  394 (406)
T PRK09295        332 LGVIAF----------NLG-----KH--HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRL  394 (406)
T ss_pred             ceEEEE----------EEC-----Cc--CHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHH
Confidence            444443          222     11  33345566789999999987443        24689999995  78999999


Q ss_pred             HHHHHHHHH
Q 047983          219 LGRMKAFYY  227 (233)
Q Consensus       219 ~~~l~~~l~  227 (233)
                      ++.|+++.+
T Consensus       395 ~~~l~~i~~  403 (406)
T PRK09295        395 VAGLQRIHR  403 (406)
T ss_pred             HHHHHHHHH
Confidence            999987643

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.40  E-value=2.9e-11  Score=105.16  Aligned_cols=200  Identities=17%  Similarity=0.107  Sum_probs=113.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCcccc-CCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|+++++++|+|.++ .+  +. .+.++..++.   -+++.|++|.+ +.+|  +||+++++  .+++++.-. .
T Consensus       151 ~~i~~l~~~~~~~livDa~~-~~--g~-~~~~~~~~~~---d~~v~s~~K~l~g~~G--~G~l~~~~--~~~~~~~~~-~  218 (368)
T PRK13479        151 DEIAAVAKRHGKRLIVDAMS-SF--GA-IPIDIAELGI---DALISSANKCIEGVPG--FGFVIARR--SELEACKGN-S  218 (368)
T ss_pred             HHHHHHHHHcCCEEEEEccc-cc--CC-ccccccccCc---eEEEecCccccccCCC--ceEEEECH--HHHHHhhcC-C
Confidence            37899999999999999554 43  22 2233333322   26678999964 6788  59999987  444321110 0


Q ss_pred             hh--hhhHHhhhh---hhhhccCcchHH-HHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC--c-
Q 047983           80 HS--ISLNMRMDD---YLLLSESVYTTV-GAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPE--G-  149 (233)
Q Consensus        80 ~~--~~~~~~~~~---~~~~~~~~~~~~-~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~-  149 (233)
                      .+  .+.......   .......++... .++...++.- .....++.++++.++++.+.+.|+++ ++..+.++.  . 
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~  297 (368)
T PRK13479        219 RSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSP  297 (368)
T ss_pred             CCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCc
Confidence            00  000000000   000001122222 3333332211 12245677789999999999999887 444322221  1 


Q ss_pred             -cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEe-ec-CHHHHHHHHHHHHHHH
Q 047983          150 -SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITF-AV-EPSAFEIGLGRMKAFY  226 (233)
Q Consensus       150 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~-~~-~~~~l~~~~~~l~~~l  226 (233)
                       ...++           ++...  ++  +.+.+.+.|.++||.+.+|..+ ..+++|++. +. ++++++.+++.|.+++
T Consensus       298 ~~~~~~-----------~~~~~--~~--~~~~l~~~L~~~gi~v~~g~~~-~~~~iRis~~~~~t~edi~~~l~~L~~~l  361 (368)
T PRK13479        298 IIVTFH-----------APADP--AY--DFKEFYERLKEQGFVIYPGKLT-QVDTFRIGCIGDVDAADIRRLVAAIAEAL  361 (368)
T ss_pred             eEEEEE-----------CCCCC--Cc--CHHHHHHHHHHCCEEEecCCCC-CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence             12233           33211  12  3345555667789999998644 246899986 53 8999999999999998


Q ss_pred             HHH
Q 047983          227 YRH  229 (233)
Q Consensus       227 ~~~  229 (233)
                      ++.
T Consensus       362 ~~~  364 (368)
T PRK13479        362 YWM  364 (368)
T ss_pred             HHc
Confidence            765

>PRK02948 cysteine desulfurase; Provisional

Probab=99.36  E-value=3e-11  Score=105.62  Aligned_cols=196  Identities=12%  Similarity=0.086  Sum_probs=114.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCcc-ccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI-LQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~-~~~~~~~~~   79 (233)
                      ++|.++|+++|+++++|+++..    +..+..+   ...+..+++.|++|.+|.+|  +|++++++.  + ...  ... 
T Consensus       158 ~~I~~l~~~~~~~vivD~~~~~----g~~~~~~---~~~~~d~~~~s~~K~~gp~G--~G~l~~~~~--~~~~~--~~~-  223 (381)
T PRK02948        158 AEIGALLKKYNVLFHSDCVQTF----GKLPIDV---FEMGIDSLSVSAHKIYGPKG--VGAVYINPQ--VRWKP--VFP-  223 (381)
T ss_pred             HHHHHHHHHcCCEEEEEChhhc----cccccCc---ccCCCCEEEecHHhcCCCCc--EEEEEEcCC--CCCCC--ccc-
Confidence            3789999999999999976543    1111122   22345578899999999888  899988762  2 110  000 


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                         .. .....+...+.+.+.. .++...++. ..++.++.++.+++.++++.+.|++++ +... ......+..    +
T Consensus       224 ---~~-~~~~~~~~~t~~~~~~-~a~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~v~-~~~~~~~~~----~  291 (381)
T PRK02948        224 ---GT-THEKGFRPGTVNVPGI-AAFLTAAEN-ILKNMQEESLRFKELRSYFLEQIQTLP-LPIE-VEGHSTSCL----P  291 (381)
T ss_pred             ---CC-CCCCCcCCCCccHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCC-CCEE-EeCCCccCc----C
Confidence               00 0000111112222222 333333322 224678889999999999999998873 3221 111111111    0


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCccc--------------CC-----CCcEEEEeec--CHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITV--------------GL-----KDWLRITFAV--EPSAFEIG  218 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f--------------~~-----~~~~Rl~~~~--~~~~l~~~  218 (233)
                      ..  +.+..+   ++ +..+.. ..|.++||.+.+|+..              +.     .+++|+|+..  ++++++..
T Consensus       292 ~i--~~~~~~---~~-~~~~~~-~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l  364 (381)
T PRK02948        292 HI--IGVTIK---GI-EGQYTM-LECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTT  364 (381)
T ss_pred             CE--EEEEeC---CC-CHHHHH-HhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHH
Confidence            00  001111   22 233444 4567889999988742              11     3689999994  78999999


Q ss_pred             HHHHHHHHHHH
Q 047983          219 LGRMKAFYYRH  229 (233)
Q Consensus       219 ~~~l~~~l~~~  229 (233)
                      ++.|.++++..
T Consensus       365 ~~~l~~~~~~~  375 (381)
T PRK02948        365 IHALETIGNQF  375 (381)
T ss_pred             HHHHHHHHHHH
Confidence            99999887655

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.36  E-value=9.6e-11  Score=102.37  Aligned_cols=192  Identities=15%  Similarity=0.074  Sum_probs=117.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|+++|+++++|++++.    +..+..+...+.   -++..|..|.++.+|  +|++..++.. .++. .+.   
T Consensus       156 ~~I~~l~~~~g~~vivD~~~~~----g~~~~~~~~~~~---D~~~~s~~K~~gp~G--~g~l~v~~~~-~~~p-~~~---  221 (379)
T TIGR03402       156 EEIGEIAKERGALFHTDAVQAV----GKIPIDLKEMNI---DMLSLSGHKLHGPKG--VGALYIRKGT-RFRP-LLR---  221 (379)
T ss_pred             HHHHHHHHHcCCEEEEECcccc----cccccCcccCCC---CEEEEcHHHcCCCCc--eEEEEECCCC-CCCC-ccc---
Confidence            3789999999999999999974    222223332222   267778889777677  7888777631 1111 000   


Q ss_pred             hhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCC----ccEEEE
Q 047983           81 SISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKE-IPCITCPKKPE----GSMFVM  154 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~----~g~~~~  154 (233)
                        .  ........ ...++... .++.+.++ ...+++++..+++++.++.+.+.|++ ++++....++.    +...+|
T Consensus       222 --g--~~~~~~~~-~gt~~~~~~~~l~~al~-~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  295 (379)
T TIGR03402       222 --G--GHQERGRR-AGTENVPGIVGLGKAAE-LATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNIS  295 (379)
T ss_pred             --C--CccCCCcC-CCCccHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEE
Confidence              0  00000001 11112222 33333332 22346777788899999999999875 76654322211    234445


Q ss_pred             EecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-------------------CCcEEEEeec--CHH
Q 047983          155 YCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-------------------KDWLRITFAV--EPS  213 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------~~~~Rl~~~~--~~~  213 (233)
                                 ++..       +.+.+...|+++||.+.+|..|..                   .+.+|+|+..  +++
T Consensus       296 -----------~~~~-------~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~  357 (379)
T TIGR03402       296 -----------FEYI-------EGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEE  357 (379)
T ss_pred             -----------ecCC-------CHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHH
Confidence                       3321       334455567889999999987642                   2689999996  899


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 047983          214 AFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       214 ~l~~~~~~l~~~l~~~~  230 (233)
                      +++.+++.|++++++..
T Consensus       358 di~~~~~~l~~~~~~~~  374 (379)
T TIGR03402       358 DIDYVLEVLPPIIARLR  374 (379)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999887654

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.34  E-value=4.1e-11  Score=104.44  Aligned_cols=193  Identities=18%  Similarity=0.180  Sum_probs=108.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC-CCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++|+||+|.......    ++    .....|++.|+||.++. ++.+.||+++++. .+.+.   +  
T Consensus       156 ~~I~~la~~~g~~lIvD~t~~~~~~~~----p~----~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~-~l~~~---~--  221 (366)
T PRK08247        156 AAIAKIAKKHGLLLIVDNTFYTPVLQR----PL----EEGADIVIHSATKYLGGHNDVLAGLVVAKGQ-ELCER---L--  221 (366)
T ss_pred             HHHHHHHHHcCCEEEEECCCccccccC----ch----hcCCcEEEeecceeccCCCceeeeEEecChH-HHHHH---H--
Confidence            478999999999999999996422211    12    12345999999999865 4679999998742 23321   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC-CccEEEEEecC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKP-EGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~g~~~~~~~~  158 (233)
                            ...+.....+.++..+..++..+      +.+....+..++|++.+.+.|++.+++..+..| .||+|.|.+ +
T Consensus       222 ------~~~~~~~g~~~s~~~a~l~~~~l------~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf~~-~  288 (366)
T PRK08247        222 ------AYYQNAAGAVLSPFDSWLLIRGM------KTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSFRL-Q  288 (366)
T ss_pred             ------HHHHHhcCCCCChHHHHHHHhcc------CcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEEEE-C
Confidence                  12222222222221111111111      233445556799999999999998776533344 899999811 1


Q ss_pred             CCcccc-cccccccCCCCChHHHHHHHHhccCEEEECCcccCC-------------CCcEEEEeecCHHHHHHHHHHHHH
Q 047983          159 EDKCLL-KLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-------------KDWLRITFAVEPSAFEIGLGRMKA  224 (233)
Q Consensus       159 ~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------~~~~Rl~~~~~~~~l~~~~~~l~~  224 (233)
                      . .... ++-    ... +...++..+...+.+++.|++.+..             ++-+|+|++-+  +.+..++-|.+
T Consensus       289 ~-~~~~~~~~----~~l-~~~~~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGlE--~~~dl~~dl~~  360 (366)
T PRK08247        289 D-EEWVNPFL----KSL-KLITFAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGIE--NVEDLIADLKQ  360 (366)
T ss_pred             C-HHHHHHHH----HcC-CcceEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEeccC--CHHHHHHHHHH
Confidence            0 0000 000    000 0112222333456778888866521             46799999963  23455555555


Q ss_pred             HHHH
Q 047983          225 FYYR  228 (233)
Q Consensus       225 ~l~~  228 (233)
                      ++++
T Consensus       361 al~~  364 (366)
T PRK08247        361 AFKQ  364 (366)
T ss_pred             HHhh
Confidence            5543

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.33  E-value=6e-11  Score=105.85  Aligned_cols=202  Identities=16%  Similarity=0.127  Sum_probs=108.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++|++||+++|.||++.+|..+|. .......+..+.++   ++||.++. |+++|++++++  + ++  .+.    
T Consensus       231 ~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~~~gv~PDiv---~~gK~l~~-G~Pigav~~~~--~-~~--~~~----  296 (442)
T TIGR00709       231 KIREVTRKHDIKLILDEVQAGFGRSGT-MFAFEHAGIEPDFV---VMSKAVGG-GLPLAVLLIAP--E-FD--AWQ----  296 (442)
T ss_pred             HHHHHHHHcCCEEEEeccccCCCCCCc-hhHHHHcCCCCcEE---EEcccccC-CcccEEEEEch--H-Hh--ccC----
Confidence            689999999999999999999977763 22222223222333   38999876 89999999987  2 22  111    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEEEec
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~~~  157 (233)
                          . .....+++.++...+++++.+ +.-.++   ...+.++++.+++.+.|++    .+.+.. +...|.++..-+-
T Consensus       297 ----~-~~~~~T~~gnpla~aaa~a~L-~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~-vrG~Gl~~~ie~~  366 (442)
T TIGR00709       297 ----P-AGHTGTFRGNQLAMVTGTEAL-NYWKDD---NLAQNAQERGERITSFLDDMIKEHPCIGN-VRGRGLMQGIMIV  366 (442)
T ss_pred             ----C-CcCCCCCCcCHHHHHHHHHHH-HHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeee-eeccceEEEEEEc
Confidence                1 111223333334433444443 211111   2233444444444444443    332221 3344444433111


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHHhh
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                      +++.. -... ...+...+-...+...+.++||.+.+....  .+.+|+...  .++++++++++++.+.+++..+
T Consensus       367 ~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~--~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~~  438 (442)
T TIGR00709       367 DERQS-KDAT-GAYPRDCELAAAIQGACFENGLLLETGGRE--GEVFRLLCPITIDQEECEEGISRFKQAVEEALA  438 (442)
T ss_pred             cCccc-cccc-ccCCcchHHHHHHHHHHHHCCeEEeecCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            11000 0000 000000011344555566889999774322  367787655  4999999999999999987643

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.33  E-value=6.1e-11  Score=104.26  Aligned_cols=199  Identities=11%  Similarity=0.000  Sum_probs=110.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCC---ccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccch
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNT---HFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGV   76 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~---~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~   76 (233)
                      ++|+++|++||+++|+||+|+ +...+.   .......+.+ .+..+++.|+||.++..|   ||+++++  ++++   .
T Consensus       158 ~~i~~l~~~~g~~livDe~~~-~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~g---g~v~~~~--~~~~---~  228 (392)
T PLN03227        158 KELVALKEEFHYRLILDESFS-FGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVG---GMTVGSE--EVVD---H  228 (392)
T ss_pred             HHHHHHHHHcCCEEEEECccc-ccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhccC---cEEecCH--HHHH---H
Confidence            368999999999999999998 332222   1111111211 233588889999866555   9998876  3332   1


Q ss_pred             hhhhhhhhHHhhhhhhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC------
Q 047983           77 AFFHSISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE------  148 (233)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~------  148 (233)
                      .        .......+++.+.++..  ++.+++.. ..  ...+.++.++++.+++.+.|++. +........      
T Consensus       229 ~--------~~~~~~~~~~~~~~p~~~~aa~~al~~-~~--~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~rg~~~~~  296 (392)
T PLN03227        229 Q--------RLSGSGYCFSASAPPFLAKADATATAG-EL--AGPQLLNRLHDSIANLYSTLTNS-SHPYALKLRNRLVIT  296 (392)
T ss_pred             H--------HHhCcCccccCCCCHHHHHHHHHHHHH-Hh--cCHHHHHHHHHHHHHHHHHHHhc-CCccccccccccccC
Confidence            1        11112223333333322  44444421 11  12456778888899999888752 111001111      


Q ss_pred             ---ccEEEEEecCCCccccccccccc-CCCCC--hHHHHHHHHhccCEEEECCc-------ccCCCCcEEEEeec--CHH
Q 047983          149 ---GSMFVMYCGSEDKCLLKLNYSLL-EGINS--DTEFALKLAKEESIIVLPGI-------TVGLKDWLRITFAV--EPS  213 (233)
Q Consensus       149 ---~g~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~ll~~~gi~v~pg~-------~f~~~~~~Rl~~~~--~~~  213 (233)
                         .+..+.         +.+..... ....+  ....+.+.+.++|+.+.+..       .+-+...+|+++..  +++
T Consensus       297 ~~~~~~i~~---------i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~e  367 (392)
T PLN03227        297 SDPISPIIY---------LRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTRE  367 (392)
T ss_pred             CCCCCCEEE---------EEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecCCCCHH
Confidence               122333         22211000 00000  11345556667899987522       12335779999996  899


Q ss_pred             HHHHHHHHHHHHHHHH
Q 047983          214 AFEIGLGRMKAFYYRH  229 (233)
Q Consensus       214 ~l~~~~~~l~~~l~~~  229 (233)
                      +++++++.|++++++.
T Consensus       368 ei~~~~~~l~~~~~~~  383 (392)
T PLN03227        368 DIDKLLTVLGEAVEAI  383 (392)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998765

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.33  E-value=3e-11  Score=107.29  Aligned_cols=193  Identities=10%  Similarity=0.058  Sum_probs=103.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++|+||++.++..+|... .....+-   ..-+.++||.++..++++|++++++  ++.+.  +..  
T Consensus       224 ~~l~~lc~~~g~llI~DEv~tg~gr~G~~~-a~~~~~v---~pDi~~~~K~l~gG~~p~~av~~~~--~i~~~--~~~--  293 (423)
T PRK05964        224 AELRRICDRHGVLLIFDEIATGFGRTGTLF-ACEQAGV---SPDIMCLSKGLTGGYLPLAATLCTA--EIFEA--FYS--  293 (423)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCCcCcchh-HHHhcCC---CCCeeeeehhhhcCcccceEEEEcH--HHHHh--hhc--
Confidence            368999999999999999999886665321 1111111   1224578999876668999999877  34321  100  


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHHhhc---CCCcccccCCCccEEEEEe
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEK-TEEEFFSKITDILREAADICCDRLKE---IPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~---~~~~~~~~~~~~g~~~~~~  156 (233)
                       ...........+++.++...+++.+.+ +. ..+++.++    +.+.-+.+.+.|++   .+.+.. .... |..+.  
T Consensus       294 -~~~~~~~~~~~T~~~np~~~aaa~a~l-~~l~~~~~~~~----~~~~g~~l~~~l~~l~~~~~i~~-vrg~-Gl~~~--  363 (423)
T PRK05964        294 -DDRAKAFMHSPSYTANPLACAAANASL-DLFEDEPVLER----VAALSAGLAEGLEPFRDLPGVAD-VRVL-GAIGA--  363 (423)
T ss_pred             -CCcccccccCCCCCcCHHHHHHHHHHH-HHHHhcCHHHH----HHHHHHHHHHHHHhhccCCCeEE-eecc-cEEEE--
Confidence             000000001111222222222333433 21 11223333    33334444444433   332221 2233 34434  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~  228 (233)
                             +.+....  . ......+.+.|.++||.+.|..     +.+|++..  .++++++++++.+.+++++
T Consensus       364 -------i~l~~~~--~-~~~~~~l~~~l~~~Gv~v~~~~-----~~lR~~p~l~~t~edId~~v~~l~~al~~  422 (423)
T PRK05964        364 -------VELDRPV--L-ERDGPALRAFALERGVLLRPLG-----NTIYLMPPYIITAEELDRITDAIVEVADE  422 (423)
T ss_pred             -------EEeccCc--c-hhHHHHHHHHHHHCCeEEEecC-----CEEEEeCCcccCHHHHHHHHHHHHHHHhh
Confidence                   2332110  0 0023455566678899998732     57899877  5999999999999999876

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.32  E-value=1.7e-10  Score=100.97  Aligned_cols=193  Identities=16%  Similarity=0.095  Sum_probs=118.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|+++|+++++|+++..    +..+..+...+.   -+++.|.+|.+|.+|  +|++..++... +.. .+.   
T Consensus       160 ~~I~~la~~~g~~~ivD~a~~~----g~~~~~~~~~~~---D~~~~s~~K~~gp~G--~g~l~vr~~~~-~~p-~~~---  225 (382)
T TIGR03403       160 KEIGEICKERGVLFHTDAVQAI----GKIPVDVQKAGV---DFLSFSAHKFHGPKG--VGGLYIRKGVE-LTP-LFH---  225 (382)
T ss_pred             HHHHHHHHHcCCEEEEechhhc----CCCccCccccCC---CEEEEcchhhCCCCc--eEEEEECCCCC-CCC-ccc---
Confidence            3789999999999999999774    222122222222   278899999888788  58888776311 111 000   


Q ss_pred             hhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC---ccEEEEEe
Q 047983           81 SISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE---GSMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~g~~~~~~  156 (233)
                         +..........  .++... .+++..++ ...++++...+++++.++++.+.|++++++.. ..+.   .+.++.  
T Consensus       226 ---g~~~~~~~~~g--t~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~--  296 (382)
T TIGR03403       226 ---GGEHMGGRRSG--TLNVPYIVAMGEAMR-LANEYLDFEKSHVRRLRDRLEDALLELPDVFV-VGDREHRVPNTIL--  296 (382)
T ss_pred             ---CCCCCCCcccC--CcChHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEE-ECCCCCCcCCEEE--
Confidence               00001111111  122222 34443332 22345777789999999999999988877765 3332   122434  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-------------------CCcEEEEeec--CHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-------------------KDWLRITFAV--EPSAF  215 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------~~~~Rl~~~~--~~~~l  215 (233)
                             +.++     ++  +.+.+...|.++||.+..|+.+..                   .+.+|+|+..  +++++
T Consensus       297 -------~~~~-----~~--~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~di  362 (382)
T TIGR03403       297 -------ISIK-----GV--EGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEI  362 (382)
T ss_pred             -------EEeC-----CC--CHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHH
Confidence                   2232     22  333444457788999998765521                   2569999995  89999


Q ss_pred             HHHHHHHHHHHHHHh
Q 047983          216 EIGLGRMKAFYYRHA  230 (233)
Q Consensus       216 ~~~~~~l~~~l~~~~  230 (233)
                      +..++.|++++++.+
T Consensus       363 d~~~~~l~~~~~~~~  377 (382)
T TIGR03403       363 DYTIEVFKKAVQRLR  377 (382)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999887754

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.31  E-value=6.8e-11  Score=102.96  Aligned_cols=194  Identities=16%  Similarity=0.110  Sum_probs=108.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++|++|++|....    .+.++..+.   .-+++.|.+|.++.  .++||+++++  .+++.+.-....
T Consensus       159 ~~i~~~~~~~~~~li~D~a~~~~~----~~~~~~~~~---~d~~~~s~~K~~~~--~g~g~~~~~~--~~~~~~~~~~~g  227 (373)
T cd06453         159 KEIGEIAHEAGVPVLVDGAQSAGH----MPVDVQDLG---CDFLAFSGHKMLGP--TGIGVLYGKE--ELLEEMPPYGGG  227 (373)
T ss_pred             HHHHHHHHHcCCEEEEEhhhhcCc----eeeeccccC---CCEEEeccccccCC--CCcEEEEEch--HHhhcCCCeecC
Confidence            478999999999999999987422    111222222   23666788998765  5589999987  444321110000


Q ss_pred             h--hhh----HHhhhh-hhhhcc-CcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC--CCc
Q 047983           81 S--ISL----NMRMDD-YLLLSE-SVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKK--PEG  149 (233)
Q Consensus        81 ~--~~~----~~~~~~-~~~~~~-~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~  149 (233)
                      .  .+.    ...... ...+.. .++... .++.+.++.-.+.-.+++++..+++++++.+.|++++++..+..  ..+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  307 (373)
T cd06453         228 GEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRA  307 (373)
T ss_pred             CCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccC
Confidence            0  000    000000 000111 122211 33333222222233466777888888999999988766554222  223


Q ss_pred             cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCccc--------CCCCcEEEEeec--CHHHHHHHH
Q 047983          150 SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITV--------GLKDWLRITFAV--EPSAFEIGL  219 (233)
Q Consensus       150 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f--------~~~~~~Rl~~~~--~~~~l~~~~  219 (233)
                      + +++         +.++     +.  +.+.+.+.|+++||.+.+|..+        +..+++|+|++.  +++++++++
T Consensus       308 ~-~~~---------~~~~-----~~--~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~  370 (373)
T cd06453         308 G-VVS---------FNLE-----GI--HPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALV  370 (373)
T ss_pred             C-eEE---------EEEC-----Cc--CHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHH
Confidence            3 444         3332     11  3444555666789999887653        235799999995  788888877


Q ss_pred             HHH
Q 047983          220 GRM  222 (233)
Q Consensus       220 ~~l  222 (233)
                      +.|
T Consensus       371 ~~l  373 (373)
T cd06453         371 EAL  373 (373)
T ss_pred             hhC
Confidence            653

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.29  E-value=6.6e-11  Score=101.51  Aligned_cols=182  Identities=14%  Similarity=0.011  Sum_probs=100.4

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEE-ecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV-TSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~-~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|+++|+++|+||+|..+....... ++........ +++.|+||.|++||   |+++ +++  ++++.+      
T Consensus       150 ~i~~~~~~~~~~livDea~~~~~~~~~~~-~~~~~~~~~d-~~~~s~sK~~~~~~---g~~~~~~~--~~~~~~------  216 (338)
T cd06502         150 AISALAKENGLPLHLDGARLANAAAALGV-ALKTYKSGVD-SVSFCLSKGGGAPV---GAVVVGNR--DFIARA------  216 (338)
T ss_pred             HHHHHHHHcCCeEeechHHHHHHHHhcCC-CHHHHHhcCC-EEEEeccccCCCcc---ceEEECCH--HHHHHH------
Confidence            68999999999999999987543221111 2222222223 45779999999888   6644 444  343211      


Q ss_pred             hhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           .........+.+.+... .+....++..  .+ .+.++.+.++++++.+.|++++. .. .++.+++.+.     
T Consensus       217 -----~~~~~~~~~~~~~~~~~~~a~~~~L~~~--~~-~~~~~~~~~~~~~l~~~L~~~~~-~~-~~~~~~~~~v-----  281 (338)
T cd06502         217 -----RRRRKQAGGGMRQSGFLAAAGLAALEND--LW-LRRLRHDHEMARRLAEALEELGG-LE-SEVQTNIVLL-----  281 (338)
T ss_pred             -----HHHHHHhCCChhhHHHHHHHHHHHhcCc--hH-HHHHHHHHHHHHHHHHHHHhcCC-Cc-ccccCCeEEE-----
Confidence                 11111111111112222 2222223222  22 34556777778999999988744 32 4555555543     


Q ss_pred             CcccccccccccCCCCChHHHHHHHH--hccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLA--KEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKA  224 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll--~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~  224 (233)
                           +.+...  .  ....+..++.  .++|+.+.+...    +++|++...  +++++++.++.+.+
T Consensus       282 -----~~~~~~--~--~~~~l~~~l~~~~~~gi~~~~~~~----~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         282 -----DPVEAN--A--VFVELSKEAIERRGEGVLFYAWGE----GGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             -----ecCCcc--H--HHHHHHHHHHHhhhCCEEEEecCC----CeEEEEeecCCCHHHHHHHHHHHhc
Confidence                 222110  0  0112222222  267999987432    799999984  78889988888754

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.29  E-value=1.6e-10  Score=100.34  Aligned_cols=194  Identities=14%  Similarity=0.128  Sum_probs=102.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|+++|+++|+|++|....    .+.+...+   +..+++.|++|.++. +.|+||+++++  .+++++...  .
T Consensus       159 ~~i~~~~~~~~~~vivD~a~~~g~----~~~~~~~~---~~d~~~~s~~K~l~~-~~~~G~l~~~~--~~~~~l~~~--~  226 (361)
T cd06452         159 KKIAKVCHEYGVPLLLNGAYTVGR----MPVSGKEL---GADFIVGSGHKSMAA-SAPIGVLATTE--EWADIVFRT--S  226 (361)
T ss_pred             HHHHHHHHHcCCeEEEECCcccCC----cCCCHHHc---CCCEEEecCCccccC-CCCeEEEEECH--HHHHHHhcc--c
Confidence            368999999999999999998521    11122222   345899999999874 55999999987  454321100  0


Q ss_pred             hhhhHHhhhhhhhhccCcc-hHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc-CCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVY-TTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPK-KPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~g~~~~~~~  157 (233)
                      ..   ..+........... ... .+++++ . ...++++...+. .++++++.+.|++++++..+. .+....++.   
T Consensus       227 ~~---~~~~~~~~~~~~~~~~~~~~~~~al-~-~~~~~~~~~~~~-~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~---  297 (361)
T cd06452         227 QM---FKIKEVELLGCTLRGAPLVTLMASF-P-HVKERVKRWDEE-VEKARWFVAELEKIEGIKQLGEKPKNHDLMF---  297 (361)
T ss_pred             cc---cccceeeeeccccCchHHHHHHHHH-H-HHHHHHHHHHHH-HHHHHHHHHHHhcCCCeEEECCCCCCCceEE---
Confidence            00   00000000111111 111 222222 1 112333333333 345578889998886665421 122333444   


Q ss_pred             CCCcccccccccccC----CCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee-cCHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLE----GINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA-VEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~-~~~~~l~~~~~~l~~~l  226 (233)
                            ++.+  ...    ........+.+.|+++||.+.+   .+...++|++.. .++++++.+++.|+++.
T Consensus       298 ------~~~~--~~~~~~~~~~~~~~~~~~~L~~~gI~~~~---~~~~~~~ri~~~g~~~e~~~~l~~al~~~~  360 (361)
T cd06452         298 ------FETP--SFDEIAKKHKRRGYFLYSELKKRGIHGIK---PGLTRYFKLSTYGLTWEQVEYVVDAFKEIA  360 (361)
T ss_pred             ------EEcC--CcchhhhhccccchhHHHHHHHcCceEEc---CCCceEEEEEecCCCHHHHHHHHHHHHHHh
Confidence                  2222  100    0000112355556677999532   233568999883 37888888888887653

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.29  E-value=1.9e-10  Score=100.00  Aligned_cols=194  Identities=16%  Similarity=0.055  Sum_probs=111.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCC-CccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGN-THFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|+++|+++++|++|..+..+- .....+ ......-..+..|..| |+.+|.++|+++..++ .+++.+...  
T Consensus       171 ~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~-~~~~~~vd~~~~s~~K-~~~a~~~~G~~~~~~~-~~~~~l~~~--  245 (371)
T PRK13520        171 PELSKIALENGIFLHVDAAFGGFVIPFLDDPPNF-DFSLPGVDSITIDPHK-MGLAPIPAGGILFRDE-SYLDALAVD--  245 (371)
T ss_pred             HHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCc-cccCCCCceEEECCcc-ccCccCCceEEEEcCH-HHHHhhccc--
Confidence            479999999999999999999765321 111111 1111111233446678 5888899999887652 233211000  


Q ss_pred             hhhhhHHhhh---hhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           80 HSISLNMRMD---DYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        80 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                      .     ....   ++...+........++...++.-..+..++.++...++++++.+.|+++ ++.....|..+ ++.  
T Consensus       246 ~-----~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~v~--  316 (371)
T PRK13520        246 T-----PYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER-GFEPVIEPVLN-IVA--  316 (371)
T ss_pred             C-----ccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC-CCEEecCCCce-EEE--
Confidence            0     0000   0000000111112333333322223445778888999999999999887 55412445544 444  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~  227 (233)
                             ++++         +.+.+.+.|.++||.+.++.   ..+++|+++..  ++++++..++.|+++++
T Consensus       317 -------~~~~---------~~~~v~~~L~~~gi~v~~~~---~~~~iRis~~~~~t~edi~~~~~~l~~~~~  370 (371)
T PRK13520        317 -------FDDP---------NPDEVREKLRERGWRVSVTR---CPEALRIVCMPHVTREHIENFLEDLKEVKK  370 (371)
T ss_pred             -------EecC---------CHHHHHHHHHHCCceeccCC---CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence                   2232         23444555667799998743   24689999873  88999999999988765

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.29  E-value=1.6e-10  Score=101.50  Aligned_cols=187  Identities=16%  Similarity=0.106  Sum_probs=105.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++|+|+++..    +.....+   ...+.-+++.|++|.+   |.|+||+++++  .+++.+.-.  .
T Consensus       176 ~~i~~~~~~~~~~~ivD~a~~~----~~~~~~~---~~~~~d~~~~s~~K~~---g~~~G~l~~~~--~~~~~l~~~--~  241 (397)
T TIGR01976       176 AAITELVHAAGALVVVDAVHYA----PHGLIDV---QATGADFLTCSAYKFF---GPHMGILWGRP--ELLMNLPPY--K  241 (397)
T ss_pred             HHHHHHHHHcCCEEEEehhhhc----cccCCCH---HHcCCCEEEEechhhc---CCceEEEEEcH--HHHhhCCCc--c
Confidence            4789999999999999999753    2221122   2223336668999986   45799999987  444321110  0


Q ss_pred             hhhhHHhhhhh-hhhccCcchHH------HHHHHHhhhcH----------HHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 047983           81 SISLNMRMDDY-LLLSESVYTTV------GAVPQILEKTE----------EEFFSKITDILREAADICCDRLKEIPCITC  143 (233)
Q Consensus        81 ~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  143 (233)
                      ..   ...... ..+..+.++..      .++..+.+.+.          .+..++.+++..+.++++.+.|++++++..
T Consensus       242 ~~---~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~  318 (397)
T TIGR01976       242 LT---FSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTL  318 (397)
T ss_pred             cc---CccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            00   000000 00111112211      22222211110          113567778888888899999988765654


Q ss_pred             ccC----CCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC-----------CCCcEEEEe
Q 047983          144 PKK----PEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG-----------LKDWLRITF  208 (233)
Q Consensus       144 ~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-----------~~~~~Rl~~  208 (233)
                      +.+    +.++ ++.         +.++     +.  +...+.+.|+++||.+..|..++           ..+++|+|+
T Consensus       319 ~~~~~~~~~~~-~~~---------~~~~-----~~--~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~  381 (397)
T TIGR01976       319 YGVARLAARVP-TVS---------FTVH-----GL--PPQRVVRRLADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGL  381 (397)
T ss_pred             eCCCCccCCCc-eEE---------EEeC-----Cc--CHHHHHHHHHHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEe
Confidence            222    1333 444         2232     11  33445566778899999886653           146899999


Q ss_pred             ec--CHHHHHHHHHH
Q 047983          209 AV--EPSAFEIGLGR  221 (233)
Q Consensus       209 ~~--~~~~l~~~~~~  221 (233)
                      ..  ++++++.+++.
T Consensus       382 ~~~~t~~di~~l~~~  396 (397)
T TIGR01976       382 AHYNTAEEVDRLLEA  396 (397)
T ss_pred             eccCCHHHHHHHHHh
Confidence            75  67777777664

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.27  E-value=1.7e-10  Score=101.36  Aligned_cols=194  Identities=18%  Similarity=0.123  Sum_probs=107.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCC----CceEEEEEecCCCccccccch
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVP----GWRLGWLVTSDPNGILQDLGV   76 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~R~G~~~~~~~~~~~~~~~~   76 (233)
                      ++|.++|++||+++|+|+++.......    ..   +..+..+++.|++|.+ .|    |+|+||+.+++  .+++.+..
T Consensus       179 ~~i~~la~~~g~~livD~~~~~~~~~~----~~---~~~~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~~~--~~~~~~~~  248 (398)
T cd00613         179 KEIADIAHSAGALVYVDGDNLNLTGLK----PP---GEYGADIVVGNLQKTG-VPHGGGGPGAGFFAVKK--ELVRFLPG  248 (398)
T ss_pred             HHHHHHHHhcCCEEEEEeccccccCCC----Ch---HHcCCCEEEeeccccC-CCCCCCCCceeEEEEhh--hhHhhCCC
Confidence            378999999999999999876432111    11   1223458999999987 65    89999999987  34432100


Q ss_pred             hhhh--h-hhhHH------h----hh--hhhhhc-cCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 047983           77 AFFH--S-ISLNM------R----MD--DYLLLS-ESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEI  138 (233)
Q Consensus        77 ~~~~--~-~~~~~------~----~~--~~~~~~-~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  138 (233)
                      ....  . .+...      .    ..  ...+.+ .+.....  .+.+.+ ....++.+++.++.++++++++.+.|+++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l-~~~~~~g~~~~~~~~~~~~~~l~~~L~~~  327 (398)
T cd00613         249 RLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYI-VYLGPEGLKEIAERAHLNANYLAKRLKEV  327 (398)
T ss_pred             CeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            0000  0 00000      0    00  000000 0111111  222222 22234567788999999999999999887


Q ss_pred             CCcccccCCCccEE--EEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHH
Q 047983          139 PCITCPKKPEGSMF--VMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSA  214 (233)
Q Consensus       139 ~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~  214 (233)
                      +...   .+.+.++  ++         ++++...  +.  +...+.+.|.++||.+.... ....+.+|++...  ++++
T Consensus       328 ~~~~---~~~~~~~~~v~---------~~~~~~~--~~--~~~~~~~~L~~~gi~~~~~~-~~~~~~lRis~~~~~t~ed  390 (398)
T cd00613         328 GGVL---PFNGPFFHEFV---------LRLPPLY--GI--RAEDLAKALIDGGFHAPTMY-LPVDGTLMIEPTETETKEE  390 (398)
T ss_pred             CCcc---cCCCCeeEEEE---------EEcCCcc--hH--HHHHHHHhhhhcCccccccc-cCCCCeEEEEcCCCCCHHH
Confidence            5542   2334444  34         3333100  11  33444444567798764421 1124789998885  7889


Q ss_pred             HHHHHHHH
Q 047983          215 FEIGLGRM  222 (233)
Q Consensus       215 l~~~~~~l  222 (233)
                      ++++++.|
T Consensus       391 id~~~~~L  398 (398)
T cd00613         391 LDALLEAL  398 (398)
T ss_pred             HHHHHHhC
Confidence            98887653

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.27  E-value=3.4e-10  Score=98.75  Aligned_cols=188  Identities=14%  Similarity=0.049  Sum_probs=105.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|+++|+++++||+|+...++.........+...+..+.+.|+||.+|..|   +.+++.+  ++.+  .+.   
T Consensus       163 ~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G---~~vl~~~--~~~~--~~~---  232 (370)
T PRK05937        163 EQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMG---AALLSSS--EVKQ--DLM---  232 (370)
T ss_pred             HHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCc---eEEEcCH--HHHH--HHH---
Confidence            47999999999999999999964443221101111222222367899999999888   3344444  2221  111   


Q ss_pred             hhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           .....+ .++.+.++.. .++.+.++. ..+.....++.+++.++++.+.|+... .    .+  ...+.     
T Consensus       233 -----~~~~~~-~~s~~~~~~~~~a~~aal~~-l~~~~~~~~~~l~~l~~~l~~~l~~~~-~----~~--~~~i~-----  293 (370)
T PRK05937        233 -----LNSPPL-RYSTGLPPHLLISIQVAYDF-LSQEGELARKQLFRLKEYFAQKFSSAA-P----GC--VQPIF-----  293 (370)
T ss_pred             -----HhCCCC-eecCCCCHHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHhcCCCC-C----CC--EEEEE-----
Confidence                 111111 1222222222 333222211 111123456677777777777775421 0    00  11123     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHHhh
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~~~  231 (233)
                            ++.     .  ..+.+.+.|.++||.+.. ..+...+++|+++..  ++++++.+++.|.++++++.+
T Consensus       294 ------~~~-----~--~~~~~~~~L~~~gi~v~~-~~~~~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~~  353 (370)
T PRK05937        294 ------LPG-----I--SEQELYSKLVETGIRVGV-VCFPTGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQK  353 (370)
T ss_pred             ------eCC-----h--hHHHHHHHHHHCCeeEEe-eCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence                  331     1  335667778888998863 223335789999984  899999999999999987643

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.27  E-value=1.9e-10  Score=102.65  Aligned_cols=195  Identities=12%  Similarity=0.079  Sum_probs=103.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|.||++..|..+|... .....+.++     +.++||.++ .|+++|++++++  ++++.   .  
T Consensus       231 ~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pD-----i~t~gK~l~-~G~p~gav~~~~--~i~~~---~--  297 (445)
T PRK08593        231 EALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPD-----LMSFGKSLA-GGMPMSAIVGRK--EIMES---L--  297 (445)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCC-----Eeeeccccc-CCcccEEEEEcH--HHHhh---h--
Confidence            368999999999999999999886655321 111122232     448999965 589999999987  44421   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEEE
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~  155 (233)
                            .......+++.++...+++++.+ +.-.++   +..+..+++-+++.+.|++    .+.+.. .... |.++.+
T Consensus       298 ------~~~~~~~T~~~~pl~~aaa~a~l-~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~-vrG~-Gl~~gi  365 (445)
T PRK08593        298 ------EAPAHLFTTGANPVSCAAALATI-DMIEDE---SLLQRSAEKGEYARKRFDQWVSKYNFVGD-VRGY-GLSIGI  365 (445)
T ss_pred             ------ccCCCCCCCCCCHHHHHHHHHHH-HHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCcEEE-Eecc-ceEEEE
Confidence                  11111122222222222333333 211111   2233333333334444433    332221 2333 333331


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHHhh
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~~~  231 (233)
                      -+.+++.      ... +.......+...+.++||.+.+..    .+.+|++...  ++++++++++.+.+.+++...
T Consensus       366 ~l~~~~~------~~~-~~~~~~~~~~~~~~~~Gv~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~  432 (445)
T PRK08593        366 DIVSDKK------LKT-RDNEAALKICNYCFEHGVVIIAVA----GNVLRFQPPLVITYEQLDTALNTIEQAFTALEA  432 (445)
T ss_pred             EEecCCC------cCC-CcHHHHHHHHHHHHHCCeEEeccC----CCEEEEECCCccCHHHHHHHHHHHHHHHHHHhc
Confidence            1111100      000 000122344555667899997632    2678886664  899999999999999987643

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.26  E-value=6.5e-11  Score=104.89  Aligned_cols=193  Identities=17%  Similarity=0.168  Sum_probs=121.9

Q ss_pred             hHHHHHHHcCcEEEEccccCc--ccc-----CCCccccccccCCccCEEEEccCccccCCCCce------EEEEEecCCC
Q 047983            2 CIEETTKKLGIMVIADEVYGH--LVF-----GNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWR------LGWLVTSDPN   68 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~--~~~-----~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R------~G~~~~~~~~   68 (233)
                      +|.++|++||++||+|++...  ..+     ++....++.     +.++.+.|+||.+.++|+|      -||++++++ 
T Consensus       177 ~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~-----ei~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~-  250 (431)
T cd00617         177 EVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIA-----EIAREMFSYADGCTMSAKKDGLVNIGGFLALRDD-  250 (431)
T ss_pred             HHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHH-----HHHHHhhccCCEEEEEeecCCCCccceEEEeCcH-
Confidence            679999999999999999432  222     121222332     3356678999999999998      568998873 


Q ss_pred             ccccccchhhhhhhhhHHhhhhhh----hh-ccCcch--HHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           69 GILQDLGVAFFHSISLNMRMDDYL----LL-SESVYT--TVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                      +++              .+++++.    .+ ..+..+  +.++++..+....+  .+.+.++++ +++++.+.|++. ++
T Consensus       251 ~l~--------------~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~--~~~l~~~~~-~r~~l~~~L~~~-G~  312 (431)
T cd00617         251 ELY--------------EEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVE--EDYLRHRVE-QVRYLGDRLDEA-GV  312 (431)
T ss_pred             HHH--------------HHHHHhccccCCccccccccHHHHHHHHHHHHhccc--HHHHHHHHH-HHHHHHHHHHHC-CC
Confidence            243              3333211    10 111111  22444433322111  233444444 559999999987 66


Q ss_pred             ccccCCCccEEEEEecCCCcccccccccccC-CC----CChHHHHHHHHhccCEEEEC-Cccc-C--C---------CCc
Q 047983          142 TCPKKPEGSMFVMYCGSEDKCLLKLNYSLLE-GI----NSDTEFALKLAKEESIIVLP-GITV-G--L---------KDW  203 (233)
Q Consensus       142 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~ll~~~gi~v~p-g~~f-~--~---------~~~  203 (233)
                      .+ ..|.||+|+|           ++.+.+. ++    -++..++.+++++.||.++. |+.. +  +         -..
T Consensus       313 ~v-~~P~Ggh~v~-----------~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~  380 (431)
T cd00617         313 PI-VEPAGGHAVF-----------IDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELEL  380 (431)
T ss_pred             Cc-cCCCcceEEE-----------EEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccce
Confidence            65 6899999999           4433211 11    15889999999999999765 4421 1  0         267


Q ss_pred             EEEEeec---CHHHHHHHHHHHHHHHHHHh
Q 047983          204 LRITFAV---EPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       204 ~Rl~~~~---~~~~l~~~~~~l~~~l~~~~  230 (233)
                      +|+++.-   +.+.++.+.+.|..++++..
T Consensus       381 ~rl~~prr~~t~~~~~~~~~~~~~~~~~~~  410 (431)
T cd00617         381 VRLAIPRRVYTQDHMDYVAAAVIALYERRE  410 (431)
T ss_pred             eEEeccccccCHHHHHHHHHHHHHHHhhHh
Confidence            9999883   88899999999988887653

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PLN02242 methionine gamma-lyase

Probab=99.25  E-value=2.4e-10  Score=101.25  Aligned_cols=113  Identities=16%  Similarity=0.141  Sum_probs=74.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceE-EEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~-G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||++||+||+|..+.+...      .+   ...|++.|+||.++++|+|+ ||+++++  ++++.   +  
T Consensus       183 ~~I~~la~~~gi~livDea~~~~~~~~~------~~---g~divv~S~SK~l~g~g~~~gG~iv~~~--~li~~---l--  246 (418)
T PLN02242        183 PELARIAHEKGVTVVVDNTFAPMVLSPA------RL---GADVVVHSISKFISGGADIIAGAVCGPA--ELVNS---M--  246 (418)
T ss_pred             HHHHHHHHHhCCEEEEECCCCccCCCHH------Hc---CCcEEEEeCccccCCCCCceEEEEEcCH--HHHHH---H--
Confidence            4789999999999999999987654221      11   24488999999999999885 8899876  44432   1  


Q ss_pred             hhhhhHHhhhh--hhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 047983           80 HSISLNMRMDD--YLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP  139 (233)
Q Consensus        80 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  139 (233)
                            ...+.  ....+....++.+++...   + ...+..+.+++++|++.+.+.|++.+
T Consensus       247 ------~~~~~~~~~~~g~~~~~~~A~l~~~---~-l~tl~~r~~~~~~~a~~la~~L~~~~  298 (418)
T PLN02242        247 ------MDLHHGALMLLGPTMNPKVAFELSE---R-LPHLSLRMKEHCRRAMEYAKRMKELG  298 (418)
T ss_pred             ------HHHhhhhhhccCCCCCHHHHHHHHc---C-CCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence                  22222  112333333432222222   1 12455567789999999999998873

>PRK06460 hypothetical protein; Provisional

Probab=99.24  E-value=6.9e-10  Score=97.08  Aligned_cols=113  Identities=16%  Similarity=0.156  Sum_probs=74.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCC-CceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVP-GWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+||+|.... .   ..++   . .+..+++.|+||.|++. |.|.||+++++  +++        
T Consensus       150 ~~I~~la~~~g~~vivDea~~~~~-~---~~~l---~-~~~divv~S~sK~l~G~~~~~~G~~~~~~--~l~--------  211 (376)
T PRK06460        150 TELSKVCKENGSILIVDATFSTPI-N---QKPL---E-LGADIVVHSASKFLAGHNDVIAGLAAGYG--KLL--------  211 (376)
T ss_pred             HHHHHHHHHcCCEEEEECCcCccc-c---CChh---h-cCCCEEEeecceeccCCCCceEEEEecCH--HHH--------
Confidence            378999999999999999997632 1   1111   1 23458999999988643 47899999876  333        


Q ss_pred             hhhhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           80 HSISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        80 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                            .+++... .++.+.++. .+...+   ...++++.+.+++.++++.+.+.|++.|.+
T Consensus       212 ------~~l~~~~~~~g~~~~~~-~a~~~l---~~~~~l~~r~~~~~~n~~~l~~~L~~~p~v  264 (376)
T PRK06460        212 ------NVIDQMRRTLGTSLDPH-AAYLTL---RGIKTLKIRMDVINRNAEQIAEFLEGHPKV  264 (376)
T ss_pred             ------HHHHHHHHhcCCCCCHH-HHHHHH---hchhhHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence                  3333221 223232322 222211   235678888999999999999999876543

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.24  E-value=2.7e-10  Score=100.31  Aligned_cols=190  Identities=18%  Similarity=0.129  Sum_probs=110.9

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      ++.++|++||+++|+||+...|..+| +   +++....+...-+-++||..+. |+.+|.++..+  ++.          
T Consensus       247 ~l~~~~~~~gillI~DEVQtG~GRTG-~---~fa~E~~gv~PDivt~aK~ig~-G~Pl~avv~r~--ei~----------  309 (447)
T COG0160         247 ALRKLCREHGILLIADEVQTGFGRTG-K---MFAFEHFGVEPDIVTLAKSLGG-GLPLSAVVGRA--EIM----------  309 (447)
T ss_pred             HHHHHHHHcCCEEEEeccccCCCccc-c---chhhhhcCCCCCEEEecccccC-CCceeEEeccH--Hhc----------
Confidence            68899999999999999999999888 3   3333333323335589999666 99999999998  332          


Q ss_pred             hhhHHhhhhhhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhh----cCCCcccccCCCccEEEEE
Q 047983           82 ISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLK----EIPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~g~~~~~  155 (233)
                          .........+.+.++.+  ++.+.+ +.-.++   .+.+...+.=+++.+.|+    +.+.+.. +... |.++- 
T Consensus       310 ----~~~~g~~~~Tf~GNpva~Aaa~AvL-~vie~e---~L~~~a~~~G~~l~~~L~~l~~~~~~Igd-VRG~-Glm~g-  378 (447)
T COG0160         310 ----DWPPGGHGGTFGGNPVACAAALAVL-DVIEEE---NLLERAAELGEYLRDRLEELQEKHPLIGD-VRGL-GLMIG-  378 (447)
T ss_pred             ----ccCCcccCCCCCcCHHHHHHHHHHH-HHHHHc---cHHHHHHHHHHHHHHHHHHHHhhcCceec-cccc-ceEEE-
Confidence                21111112223445544  333333 211221   222222222333333332    2433321 2232 55665 


Q ss_pred             ecCCCccccccccccc--CCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          156 CGSEDKCLLKLNYSLL--EGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                              +.+.....  .+...-.+.+.+.+.++|+++..+..++  +.+||...  .++++++++++.|.+.+.+.
T Consensus       379 --------iE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~~~--nviRi~PPL~is~e~~d~~l~il~~al~~~  446 (447)
T COG0160         379 --------VELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGPHG--NVLRILPPLTISDEELDEGLDILEEALKEA  446 (447)
T ss_pred             --------EEEecCCCCCCCCHHHHHHHHHHHHHcCCEEeccCCCC--cEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence                    44432210  0111133555666668899998876555  77888554  49999999999999998764

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.23  E-value=3.9e-10  Score=100.57  Aligned_cols=189  Identities=17%  Similarity=0.179  Sum_probs=104.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++|.||++..|..+|..+ ....++..+.++   ++||.++ .|+++|++++++  ++.+   ..   
T Consensus       245 ~~l~~l~~~~g~lli~DEv~tG~gr~G~~~-a~~~~gv~pDiv---t~~K~l~-~G~p~gav~~~~--~i~~---~~---  311 (441)
T PRK05769        245 KELRKLADKYGILLIDDEVQTGMGRTGKMF-AIEHFGVEPDII---TLAKAIA-GGLPLGAVIGRA--ELMF---LP---  311 (441)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCCccccee-hhhccCCCCCEE---EEccccc-CCcccEEEEEeh--hhhh---cC---
Confidence            368999999999999999999876665321 111222222333   5899977 689999999987  3331   11   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEEEe
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~~  156 (233)
                           .. ....+++.++...+++.+.+ + ..++   ...+.++++-+++.+.|++    .+.+.. .... |.++-  
T Consensus       312 -----~~-~~~~T~~g~p~~~aaa~a~L-~-~l~~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~-vrg~-G~~~~--  376 (441)
T PRK05769        312 -----PG-SHANTFGGNPVAAAAALATL-E-ELEE---GLLENAQKLGEYLRKELKELKEKYEFIGD-VRGL-GLMIG--  376 (441)
T ss_pred             -----CC-CCCCCCCcCHHHHHHHHHHH-H-HHHH---HHHHHHHHHHHHHHHHHHHHHHhCCCeee-eecc-eEEEE--
Confidence                 11 11122332222322333333 1 1111   4445555555555555544    321111 2222 44444  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~  228 (233)
                             +.+..+...........+.+.+.++||.+.|..    .+.+|++...  ++++++++++++.+.+.+
T Consensus       377 -------i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  439 (441)
T PRK05769        377 -------VELVKDRKEPDPKLRDKVLYEAFKRGLLLLGAG----KSAIRIIPPLIITEEEADIGLEILEEAIKE  439 (441)
T ss_pred             -------EEeccCCccccHHHHHHHHHHHHhCCcEEecCC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                   222111000000122344555667899997632    3678887775  999999999999999875

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.22  E-value=5.6e-10  Score=99.53  Aligned_cols=194  Identities=9%  Similarity=0.050  Sum_probs=114.9

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccc-cccccCCccCEEEEccCcccc-CCCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFV-PMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~-~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++|+++|+++++|++|.--..++.... ......  .--|+++|++|++ |..|   |++++++  .+.+   .+  
T Consensus       239 ~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~--~~D~vtgT~hKaL~GP~G---G~I~~~~--~l~~---~L--  306 (493)
T PRK13580        239 KLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVP--HADIVTTTTHKTLRGPRG---GLVLAKK--EYAD---AV--  306 (493)
T ss_pred             HHHHHHHHcCCEEEEECchhhceeccccchhhcCCCC--CCcEEEeCChhhccCCCe---EEEEecH--HHHH---HH--
Confidence            789999999999999999997666543211 011111  1228899999976 4344   9999886  3332   11  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                            ++...+.. +.+.++..++.+..+..-.....++.++.+.+|.+.|.+.|.+. ++...........++     
T Consensus       307 ------~~a~P~i~-gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~-G~~vv~ggTdshIV~-----  373 (493)
T PRK13580        307 ------DKGCPLVL-GGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKR-GARLVTGGTDNHLVL-----  373 (493)
T ss_pred             ------hhCCCccc-CCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhc-CCCccCCCCCCCEEE-----
Confidence                  22222222 22222222222222222122223667899999999999999886 443211112234444     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC-C-----CCcEEEEeec------CHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG-L-----KDWLRITFAV------EPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~-----~~~~Rl~~~~------~~~~l~~~~~~l~~~l~  227 (233)
                            ++++.. +  .+...+.+.|.+.||.+.+-..-. +     ...+||++..      ++++++++.+.|.++++
T Consensus       374 ------V~lg~~-~--~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~  444 (493)
T PRK13580        374 ------IDVTSF-G--LTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLS  444 (493)
T ss_pred             ------EEeCCH-H--HHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHH
Confidence                  333211 0  133467778889999997532111 1     4679998775      47899999999988886


Q ss_pred             HH
Q 047983          228 RH  229 (233)
Q Consensus       228 ~~  229 (233)
                      ..
T Consensus       445 ~~  446 (493)
T PRK13580        445 NT  446 (493)
T ss_pred             hh
Confidence            53

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.22  E-value=1.3e-10  Score=103.88  Aligned_cols=197  Identities=15%  Similarity=0.131  Sum_probs=111.7

Q ss_pred             ChHHHHHHHcCcEEEE--ccccCccccCCCccccccccCCccCEEEEc---cCccccCCCCceEEEEEecCCCccccccc
Q 047983            1 FCIEETTKKLGIMVIA--DEVYGHLVFGNTHFVPMGVFGSIVPVLTLG---SISKRWIVPGWRLGWLVTSDPNGILQDLG   75 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~--De~y~~~~~~~~~~~~~~~~~~~~~~i~~~---s~sK~~~~~G~R~G~~~~~~~~~~~~~~~   75 (233)
                      ++|.++|+++|+++|+  |.+.....      ...   ...+..+++.   ++||.|.++|+|+||+++++  ++++.+.
T Consensus       223 ~~I~~~a~~~~~~~iv~~d~~~~g~~------~~~---~~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~--~~~~~~~  291 (447)
T PRK00451        223 EEIAEIAHAGGALFIVGVDPVSLGLL------KPP---GEYGADIVVGEGQPLGIPLSFGGPYLGFFATRK--KLVRQMP  291 (447)
T ss_pred             HHHHHHHHHCCCEEEEEcChHHhccC------CCc---ccCCCCEEEECCCcCCCCCCCCCCCchHHHhhH--HHHhhCC
Confidence            4799999999999998  43321111      011   1122224443   78898889999999999877  4443210


Q ss_pred             hh---h-hhhhh-------hH---Hhhh-hhhhhccCcchHHH--HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 047983           76 VA---F-FHSIS-------LN---MRMD-DYLLLSESVYTTVG--AVPQILEKTEEEFFSKITDILREAADICCDRLKEI  138 (233)
Q Consensus        76 ~~---~-~~~~~-------~~---~~~~-~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  138 (233)
                      -.   . ....+       +.   ...+ ...+.+.+.+....  +.+..+....++.+++.++++.++++++.+.|+++
T Consensus       292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~  371 (447)
T PRK00451        292 GRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEI  371 (447)
T ss_pred             CCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            00   0 00000       00   0000 00111222222211  11112222234568889999999999999999998


Q ss_pred             CCcccccCCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEE-EECCcccCC--CCcEEEEee--cCHH
Q 047983          139 PCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESII-VLPGITVGL--KDWLRITFA--VEPS  213 (233)
Q Consensus       139 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~-v~pg~~f~~--~~~~Rl~~~--~~~~  213 (233)
                      +++.. .  .+++|.+         +.++++.     ++.++..+++ ++||. ..+++.|++  .+++|+++.  .+++
T Consensus       372 ~g~~~-~--~~~~~~~---------~~v~~~~-----~~~~~~~~L~-~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e  433 (447)
T PRK00451        372 GGVEL-F--DGPFFNE---------FVVRLPK-----PAEEVNEALL-EKGILGGYDLGRYYPELGNHLLVCVTEKRTKE  433 (447)
T ss_pred             CCEEe-c--CCCeEEE---------EEEecCC-----CHHHHHHHHH-hcCCCCCcccccccCCcCCEEEEecCCCCCHH
Confidence            77654 2  4555544         2233221     2555666655 55555 456666653  578999997  3788


Q ss_pred             HHHHHHHHHHHHH
Q 047983          214 AFEIGLGRMKAFY  226 (233)
Q Consensus       214 ~l~~~~~~l~~~l  226 (233)
                      ++++.++.|++++
T Consensus       434 ~i~~l~~~L~~~~  446 (447)
T PRK00451        434 DIDALVAALGEVL  446 (447)
T ss_pred             HHHHHHHHHHHHh
Confidence            8998888887654

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.22  E-value=1e-10  Score=100.74  Aligned_cols=173  Identities=12%  Similarity=0.038  Sum_probs=107.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccC-EEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~-~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++++|++|+.+.+........  .....+ ..+..|++|. +.++.++|++..+.             
T Consensus       168 ~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~d~~~~s~~K~-l~~p~g~g~~~~~~-------------  231 (345)
T cd06450         168 EEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHL--DFGIERVDSISVDPHKY-GLVPLGCSAVLVRA-------------  231 (345)
T ss_pred             HHHHHHHHHhCCeEEEechhhHHHhhChhhHHH--hcCccccCEEEEchhHh-hCCCcchHHHHHHH-------------
Confidence            478999999999999999999877543211111  111122 2456799996 55666677654320             


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                                         ..+..++..+    ....+++.+++..+.++++.+.|++++++..+.+|+++++.|     
T Consensus       232 -------------------~~~~~~l~~l----~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f-----  283 (345)
T cd06450         232 -------------------LKLWATLRRF----GRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCF-----  283 (345)
T ss_pred             -------------------HHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEE-----
Confidence                               0000112221    234466777888889999999998887765444567777666     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec---CHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV---EPSAFEIGLGRMKA  224 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~---~~~~l~~~~~~l~~  224 (233)
                           +++...-.++  +...+.+.|.++|+.+.++..+....++|+++..   +.++++++++.|++
T Consensus       284 -----~~~~~~~~~~--~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         284 -----RLKPSVKLDE--LNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             -----EECCcchhhH--HHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence                 1221000001  3344555667777777776666556899999984   67888888887764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.21  E-value=9.5e-10  Score=96.55  Aligned_cols=192  Identities=13%  Similarity=0.028  Sum_probs=107.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|+++|+++|+|++|+.-    ..+.+...+   +.-+++.|++|.++ ++.|+||+++++  ++++.  +.   
T Consensus       178 ~~I~~la~~~g~~livD~a~~~g----~~~~~~~~~---g~D~~~~s~~K~l~-~~~~~G~l~~~~--~~i~~--~~---  242 (387)
T PRK09331        178 KKVAKVAHEYGIPFLLNGAYTVG----RMPVDGKKL---GADFIVGSGHKSMA-ASAPSGVLATTE--EYADK--VF---  242 (387)
T ss_pred             HHHHHHHHHcCCEEEEECCcccC----CcCCCHHHc---CCCEEEeeCccccc-CCCCEEEEEECH--HHHhh--cc---
Confidence            37899999999999999999852    112222222   23388999999976 456999999987  44432  11   


Q ss_pred             hhhhHHhhhhhh-----hhcc-CcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-CCccEE
Q 047983           81 SISLNMRMDDYL-----LLSE-SVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKK-PEGSMF  152 (233)
Q Consensus        81 ~~~~~~~~~~~~-----~~~~-~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~g~~  152 (233)
                           .....+.     .++. ...+.. .+++++  ....+... ..+...++.+++.+.|++++++..+.. +....+
T Consensus       243 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~aal--~~~~~~~~-~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i  314 (387)
T PRK09331        243 -----RTSRKFGVKEVELLGCTLRGAPLVTLMASF--PHVVERVK-RWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDL  314 (387)
T ss_pred             -----cccCCCcccceeeeceecCchHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCe
Confidence                 1000000     0111 111111 223332  11122222 344556777788999998866654221 222333


Q ss_pred             EEEecCCCccccccccccc----CCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEe-ecCHHHHHHHHHHHHHHHH
Q 047983          153 VMYCGSEDKCLLKLNYSLL----EGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITF-AVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~-~~~~~~l~~~~~~l~~~l~  227 (233)
                      ..         +..+  ..    .+...+...+.+.|+++||...+..   ....+|+.. +.+.++++.+++.|+++++
T Consensus       315 ~~---------~~~~--~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~---~~~i~ri~~~g~t~~di~~l~~aL~~i~~  380 (387)
T PRK09331        315 MK---------FETP--SFDEIAKKHKRRGFFLYEELKKRGIHGIKPG---ATKEFKLSTYGLTWEQVEYVADAFKEIAE  380 (387)
T ss_pred             EE---------EeCC--chhHHhhhccccchhHHHHHHHcCceEEccC---CceEEEEEeccCCHHHHHHHHHHHHHHHH
Confidence            33         2222  10    0000122345556678899854321   235567766 4489999999999998877


Q ss_pred             HH
Q 047983          228 RH  229 (233)
Q Consensus       228 ~~  229 (233)
                      +.
T Consensus       381 ~~  382 (387)
T PRK09331        381 KY  382 (387)
T ss_pred             hc
Confidence            64

>PRK07049 methionine gamma-lyase; Validated

Probab=99.21  E-value=6.1e-10  Score=98.93  Aligned_cols=112  Identities=12%  Similarity=0.108  Sum_probs=70.3

Q ss_pred             hHHHHHHH------cCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccC-CCCceEEEEEecCCCcccccc
Q 047983            2 CIEETTKK------LGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWI-VPGWRLGWLVTSDPNGILQDL   74 (233)
Q Consensus         2 ~i~~l~~~------~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~R~G~~~~~~~~~~~~~~   74 (233)
                      +|.++|+.      +++++|+||+|.......    ++    .....|++.|+||.++ .+|+|+||+++++  +++   
T Consensus       195 ~l~~la~~~~~~~~~~~~vvvDety~~~~~~~----pl----~~g~divv~S~SK~~gG~~glr~G~vv~~~--~l~---  261 (427)
T PRK07049        195 AVRRVADAIEARQGHRPIIACDNTLLGPVFQK----PL----EHGADLSVYSLTKYVGGHSDLVAGAVLGRK--ALI---  261 (427)
T ss_pred             HHHHHHHHhhhcccCCCEEEEECCccccccCC----cc----ccCCCEEEEcCceeecCCCCcEEEEEECCH--HHH---
Confidence            56677766      899999999987643221    22    1134588889999998 5999999999876  343   


Q ss_pred             chhhhhhhhhHHhhhhhhh-hccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 047983           75 GVAFFHSISLNMRMDDYLL-LSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCIT  142 (233)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  142 (233)
                                 ..+..... ++...++.. .++...+     +.+....+...++++.+.+.|++.|.+.
T Consensus       262 -----------~~l~~~~~~~g~~ls~~~a~l~~r~L-----~tl~~R~~~~~~~a~~la~~L~~~p~V~  315 (427)
T PRK07049        262 -----------RQVRALRSAIGTQLDPHSCWMLGRSL-----ETLVLRMERANRNARAVAEFLRDHPKVE  315 (427)
T ss_pred             -----------HHHHHHHHhcCCCCCHHHHHHHHcCC-----ChHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence                       23322212 222223322 2222222     2345555666999999999998876543

>PRK06541 hypothetical protein; Provisional

Probab=99.18  E-value=1.2e-09  Score=97.95  Aligned_cols=202  Identities=12%  Similarity=0.097  Sum_probs=109.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCc-eEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGW-RLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|.||++..|...|... .....+-.+.+   -++||.++ .|+ ++|++++++  ++++.  +.   
T Consensus       246 ~l~~lc~~~g~llI~DEV~tGfGR~G~~~-a~~~~gv~PDi---vt~gK~l~-~G~~pigav~~~~--~i~~~--~~---  313 (460)
T PRK06541        246 RVREICDRYDVLLVSDEVICAFGRLGEMF-GCERFGYVPDI---ITCAKGIT-SGYSPLGAMIASD--RLFEP--FL---  313 (460)
T ss_pred             HHHHHHHHcCCEEEEechhhCCCcCchhh-hhhhcCCCCCE---EEeccccc-CCccceeEEEEcH--HHHHH--hh---
Confidence            68999999999999999999885444321 11112211223   36899976 687 999999987  34321  11   


Q ss_pred             hhhhHHhhhhh-hhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc--ccCCCccEEEEE
Q 047983           81 SISLNMRMDDY-LLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITC--PKKPEGSMFVMY  155 (233)
Q Consensus        81 ~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~g~~~~~  155 (233)
                           .....+ ...+.+.++..  ++++.+ +. ..  -....+.++++.+++.+.|+++.....  .....|.++...
T Consensus       314 -----~~~~~~~~~~T~~gnp~~~aaala~l-~~-l~--~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~ie  384 (460)
T PRK06541        314 -----DGPTMFLHGYTFGGHPVSAAVALANL-DI-FE--REGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIE  384 (460)
T ss_pred             -----cCCCccccCCCCCCCHHHHHHHHHHH-HH-HH--hccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEE
Confidence                 000111 11122333332  333332 11 11  123456667777777777766422211  133555555441


Q ss_pred             ecCCCcccccccccccCCCCC--hHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHHh
Q 047983          156 CGSEDKCLLKLNYSLLEGINS--DTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~  230 (233)
                       +..|+.+ +-++..  ...+  ....+...+.++||.+.|.. . ..+.+|++..  .+++++++++++|.+.+++..
T Consensus       385 -~~~~~~~-~~~~~~--~~~~~~~~~~~~~~l~~~Gi~~~~~~-~-g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~~  457 (460)
T PRK06541        385 -LVKDKAT-KETFTD--DESERLLRGFLSPALFEAGLYCRADD-R-GDPVVQLAPPLISGQEEFDEIEQILRSVLTEAW  457 (460)
T ss_pred             -EecCccc-ccCCcc--hhhhhhHHHHHHHHHHhCCeEEEecC-C-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence             1111000 000000  0000  11234455667899998731 1 1368999888  599999999999999998754

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.18  E-value=1.6e-09  Score=94.27  Aligned_cols=187  Identities=18%  Similarity=0.117  Sum_probs=108.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCC----CccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccch
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGN----THFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGV   76 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~----~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~   76 (233)
                      ++|.++|+++|+++|+|++|..+..+-    .....+. +....--.+..|..| |+.++.|+|+++..++ ++++.+..
T Consensus       173 ~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d-~~~~~~d~~~~s~~K-~~~~~~~~G~~~~~~~-~~~~~l~~  249 (373)
T TIGR03812       173 EELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFD-FSLPGVQSITIDPHK-MGLSPIPAGGILFRSK-SYLKYLSV  249 (373)
T ss_pred             HHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCcc-ccCCCCCEEEECccc-cCCCcCCceEEEEeCH-HHHhhhcc
Confidence            478999999999999999998764310    0000110 000011133456679 6888889997775442 33321100


Q ss_pred             hhhhhhhhHHhhhhhhhhc------cCcchH-HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCc
Q 047983           77 AFFHSISLNMRMDDYLLLS------ESVYTT-VGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEG  149 (233)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  149 (233)
                      .           ..+....      ...+.. ..++...++...++.+++..+++.++++++.+.|++++.... ..|..
T Consensus       250 ~-----------~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~  317 (373)
T TIGR03812       250 D-----------APYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPV-IEPVL  317 (373)
T ss_pred             c-----------CcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEE-cCCCc
Confidence            0           0110000      011111 133333333223456678889999999999999998753322 34433


Q ss_pred             cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 047983          150 SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKA  224 (233)
Q Consensus       150 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~  224 (233)
                       .++.         ++++         +...+.+.|.++||.+.++.   ..+++|+++..  ++++++..++.|++
T Consensus       318 -~~v~---------~~~~---------~~~~v~~~L~~~gi~v~~~~---~~~~iRis~~~~~t~edid~l~~~L~~  372 (373)
T TIGR03812       318 -NIVA---------FEVD---------DPEEVRKKLRDRGWYVSVTR---CPKALRIVVMPHVTREHIEEFLEDLKE  372 (373)
T ss_pred             -eEEE---------EEeC---------CHHHHHHHHHHCCceeccCC---CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence             3444         3332         22345566677899998753   35799999984  78888988888864

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK07678 aminotransferase; Validated

Probab=99.17  E-value=9e-10  Score=98.54  Aligned_cols=207  Identities=14%  Similarity=0.095  Sum_probs=105.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++.++|++||+++|.||+...|..+|.-. .....+.++     +-+++|.++...+++|.+++++  ++.+.  +.   
T Consensus       238 ~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PD-----ivt~gK~lggG~~Pi~av~~~~--~i~~~--~~---  305 (451)
T PRK07678        238 AVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPD-----IITMAKGITSAYLPLSATAVKK--EIYEA--FK---  305 (451)
T ss_pred             HHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCC-----EEEeecccccCCcceeEEEEcH--HHHHH--Hh---
Confidence            68999999999999999999986665311 111223332     4478998655337999999987  34321  11   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEE-EFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                      .......+.+..+++.++...+++++.+ +.-.+ +..++.++.-..-++.+.+.+++.+.+.. ....|.++.. -+.+
T Consensus       306 ~~~~~~~~~h~~T~~gnp~~~aaa~a~l-~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~-vrg~Gl~~~i-~~~~  382 (451)
T PRK07678        306 GKGEYEHFRHVNTFGGNPAACALALKNL-EIMENENLIERSAQLGELLLEQLKEELGEHPLVGD-IRGKGLLVGI-ELVN  382 (451)
T ss_pred             ccCcccccccCCCCCcCHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEE-EEeeceEEEE-EEec
Confidence            0000000112223333333332444443 11111 22222222222223333333334433221 3343443332 1111


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCccc--CCCCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITV--GLKDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f--~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                      |..      ...+........+...+.++||.+.+....  +..+.+|++...  ++++++++++.+.+.+++.
T Consensus       383 ~~~------~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~  450 (451)
T PRK07678        383 DKE------TKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI  450 (451)
T ss_pred             CCc------ccCcCchHHHHHHHHHHHHCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence            100      000000012344555666889999764321  124678998664  8999999999999998764

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.16  E-value=1.4e-09  Score=93.71  Aligned_cols=188  Identities=14%  Similarity=0.146  Sum_probs=111.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      ++.++|++||+++|.||+...+..+|.    +.+...++..--|-++.|.+| .|+++|.+++..  .+.+   ..    
T Consensus       209 ~lr~lCd~~g~LLI~DEVQtG~GRTGk----~fA~e~~gV~PDI~tlaK~Lg-GG~PigA~la~~--~~~~---~~----  274 (404)
T COG4992         209 ALRELCDEHGALLILDEVQTGLGRTGK----LFAYEHYGVEPDILTLAKALG-GGFPIGAMLATE--EIAS---AF----  274 (404)
T ss_pred             HHHHHHHHhCeEEEEeccccCCCccch----HHHHHHhCCCCCEEEeecccc-CCccceeeEEch--hhhh---cC----
Confidence            578999999999999999999988874    333322222233668999954 579999999974  2221   11    


Q ss_pred             hhhHHhhhhhhhhccCcchHH--HHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           82 ISLNMRMDDYLLLSESVYTTV--GAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                          ..-.+-.  +.+.++.+  ++.+. ++.- .++.+++.++.=..-++.|.+..++.+.+.. +... |..+-    
T Consensus       275 ----~~G~HgS--TfGGNpLacAv~~a~-l~~l~~e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~-vRG~-GLmiG----  341 (404)
T COG4992         275 ----TPGDHGS--TFGGNPLACAVALAV-LEVLLEEGLLENVREKGEYLLQRLRELKRRYPLVKE-VRGR-GLMIG----  341 (404)
T ss_pred             ----CCCcccC--CCCcCHHHHHHHHHH-HHHHcchhHHHHHHHHHHHHHHHHHHHhhcCCceee-eecc-eeEEE----
Confidence                1222222  33455555  33333 2222 2334444333333333333333333432221 2232 55555    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHHhh
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                           +.+..+.      ....+.+.+.++||++.+..    .+.+|+.-.  .+++++++++++|.+++.....
T Consensus       342 -----iel~~~~------~a~~~~~~~~~~gvL~~~a~----~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~~~  401 (404)
T COG4992         342 -----IELKEPY------RARDIVRALREEGVLVLPAG----PNVIRFLPPLVITEEEIDEALDALERALAAASA  401 (404)
T ss_pred             -----EEecCcc------cHHHHHHHHHHCCeEEecCC----CCeEEecCCccCCHHHHHHHHHHHHHHHHHhhh
Confidence                 4443211      24555666778899998854    478999555  4999999999999999987653

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.16  E-value=3.7e-09  Score=93.24  Aligned_cols=203  Identities=11%  Similarity=0.011  Sum_probs=120.3

Q ss_pred             ChHHHH--HHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEET--TKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l--~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|.++  |+++|+++|+|++++-    +..+..+..+   +.-+++.|.+|.+++|. ++||+++++  ..++++  ..
T Consensus       157 ~~i~~l~~~~~~g~~~vvD~v~s~----g~~~id~~~~---~~D~~~~s~~K~l~~P~-G~G~l~~~~--~~~~~~--~~  224 (401)
T PLN02409        157 AGVRKLLDCAQHPALLLVDGVSSI----GALDFRMDEW---GVDVALTGSQKALSLPT-GLGIVCASP--KALEAS--KT  224 (401)
T ss_pred             HHHHHHHhhhccCcEEEEEccccc----CCcccccccc---CccEEEEcCccccCcCC-CcceeEECH--HHHHHH--hc
Confidence            367888  9999999999999874    2222222222   22366777799876643 699999987  344321  10


Q ss_pred             hhhh----hhHHh--hhhhhhh-ccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC--
Q 047983           79 FHSI----SLNMR--MDDYLLL-SESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE--  148 (233)
Q Consensus        79 ~~~~----~~~~~--~~~~~~~-~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--  148 (233)
                      .+..    +....  ....... ...++... .++...++.-.+.-.+++++++++.++++.+.|+++ ++..+.+..  
T Consensus       225 ~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~  303 (401)
T PLN02409        225 AKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW-GLKLCTKKPEW  303 (401)
T ss_pred             CCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhh
Confidence            0000    00000  0000001 11122222 344433332233457788899999999999999877 444322211  


Q ss_pred             -ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 047983          149 -GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAF  225 (233)
Q Consensus       149 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~  225 (233)
                       ++...|         +.++.    +. +..+....+++++||.+.+|.+-.....+||+.-.  +.+++...++.|.++
T Consensus       304 ~s~~v~~---------~~~p~----~~-~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~  369 (401)
T PLN02409        304 RSDTVTA---------VVVPE----GI-DSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMV  369 (401)
T ss_pred             cccceEE---------EeCCC----CC-CHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence             223345         33332    22 34566667778899999987653236789998775  889999999999998


Q ss_pred             HHHHh
Q 047983          226 YYRHA  230 (233)
Q Consensus       226 l~~~~  230 (233)
                      +.+..
T Consensus       370 l~~~g  374 (401)
T PLN02409        370 LKDVG  374 (401)
T ss_pred             HHHcC
Confidence            87653

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.14  E-value=6.3e-10  Score=96.92  Aligned_cols=187  Identities=10%  Similarity=0.063  Sum_probs=104.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++|+|++|+.-.      ..+..++.   -+++.|.+|.+  +|+|.||+++++  ++++.+...   
T Consensus       169 ~~i~~~a~~~gi~vivD~a~~~~~------~~~~~~g~---D~~~~S~~K~l--~gp~~G~l~~~~--~~i~~~~~~---  232 (363)
T TIGR01437       169 EDAAQVAQEHNLPLIVDAAAEEDL------QKYYRLGA---DLVIYSGAKAI--EGPTSGLVLGKK--KYIEWVKLQ---  232 (363)
T ss_pred             HHHHHHHHHcCCeEEEECCCCCch------HHHHHcCC---CEEEEeCCccc--CCCceEEEEEcH--HHHHHHHhc---
Confidence            479999999999999999997211      11112222   26778999964  578899999866  344321000   


Q ss_pred             hhhhHHhhhhhhhhccCcchHH---HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCc-cEEEEEe
Q 047983           81 SISLNMRMDDYLLLSESVYTTV---GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEG-SMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-g~~~~~~  156 (233)
                      ..    ....  .+..+..+.+   +++..+.     ++..+..+.+.++++.+.+.|++++++.....+.. +. .+  
T Consensus       233 ~~----~~~~--~~~~~~~~~~gl~aAl~~~~-----~~~~~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~-~~--  298 (363)
T TIGR01437       233 SK----GIGR--AMKVGKENILGLTAALEQYL-----STGKESGAEMVAKLTPFIEALNTLKGVSASIVQDEAGR-DI--  298 (363)
T ss_pred             cC----CCcc--eeccCHHHHHHHHHHHHHHH-----ccCcccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCC-cC--
Confidence            00    0000  0011111111   2222221     12223344455677789999998888765322211 11 11  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccC--EEEECCcccCCCCcEEEEeec-CHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEES--IIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRMKAF  225 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g--i~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l~~~  225 (233)
                         +...+.++... .++  +...+.+.|++++  |.+++  .|...+.+|+++.+ ++++++.+.++|.++
T Consensus       299 ---~~~~v~~~~~~-~g~--~~~~l~~~L~~~~~~I~~r~--~~~~~~~~~l~~~~~~~~e~~~~~~~l~~~  362 (363)
T TIGR01437       299 ---ARAEIRFDESE-LGM--TAADVVQALRQGEPAIYTRG--YKANEGIIEIDPRSVTGGQLDIIVERIREI  362 (363)
T ss_pred             ---ceEEEEEeccC-CCC--CHHHHHHHHhcCCCCEEEee--eeecCCeEEEEeecCCHHHHHHHHHHHHHh
Confidence               00002233211 122  4455556667667  66655  56667899999887 788899998888765

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.13  E-value=6.5e-09  Score=92.17  Aligned_cols=187  Identities=14%  Similarity=0.094  Sum_probs=108.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCc-cccccccCCccCEEEEccCccccC-CCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTH-FVPMGVFGSIVPVLTLGSISKRWI-VPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~-~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++|++||+++|+|++++...+.... ..++   .  .--++++|++|.++ ..|   |+++++++  .+     .  
T Consensus       187 ~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~---~--~~Di~~~s~~K~l~g~~G---G~v~~~~~--~~-----~--  249 (416)
T PRK13034        187 RFREIADEVGALLMVDMAHIAGLVAAGEHPNPF---P--HAHVVTTTTHKTLRGPRG---GMILTNDE--EI-----A--  249 (416)
T ss_pred             HHHHHHHHcCCEEEEeCcccccCcccCCCCCCC---C--CceEEEEeCcccCCCCCC---eEEEECcH--HH-----H--
Confidence            6889999999999999998865443221 1111   1  23388999999884 345   87777652  22     1  


Q ss_pred             hhhhhHHhhhhhhhh--ccCcchHH-HH-HHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-CCccEEEE
Q 047983           80 HSISLNMRMDDYLLL--SESVYTTV-GA-VPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKK-PEGSMFVM  154 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~--~~~~~~~~-~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~g~~~~  154 (233)
                            .+++.....  ..+..+.. ++ ..++++. ......+.++.+.++.+++.+.|++. ++....+ ++ .....
T Consensus       250 ------~~~~~~~~~~~~~~~~~~~~aa~~~al~~~-~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~~~~~~~~-t~i~~  320 (416)
T PRK13034        250 ------KKINSAVFPGLQGGPLMHVIAAKAVAFGEA-LQPEFKTYAKQVIANAQALAEVLKER-GYDLVSGGTD-NHLLL  320 (416)
T ss_pred             ------HHHHhhcCCcccCCccHHHHHHHHHHHHHH-hChhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCCCC-CcEEE
Confidence                  222222121  11122222 22 2222211 11223466789999999999999887 5543111 22 33333


Q ss_pred             EecCCCcccccccccccCCCCChHHHHHHHHhccCEEEEC----Cc-ccC-CCCcEEEEeec------CHHHHHHHHHHH
Q 047983          155 YCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLP----GI-TVG-LKDWLRITFAV------EPSAFEIGLGRM  222 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p----g~-~f~-~~~~~Rl~~~~------~~~~l~~~~~~l  222 (233)
                               +.+....     .+.....+.|+++||.+.+    +. .+. .+..+|+++..      ++++++++.+.|
T Consensus       321 ---------v~~~~~~-----~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l  386 (416)
T PRK13034        321 ---------VDLRPKG-----LSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWI  386 (416)
T ss_pred             ---------EEcCCCC-----CCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHH
Confidence                     2232211     1556666778888999974    10 111 14679998653      578999999999


Q ss_pred             HHHHHH
Q 047983          223 KAFYYR  228 (233)
Q Consensus       223 ~~~l~~  228 (233)
                      .+++.+
T Consensus       387 ~~~~~~  392 (416)
T PRK13034        387 LDVLDD  392 (416)
T ss_pred             HHHHhc
Confidence            887763

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.11  E-value=3.1e-09  Score=96.14  Aligned_cols=199  Identities=16%  Similarity=0.068  Sum_probs=103.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|.||++..|...|... .....+.++     +.+++|.++...+++|.+++++  ++.+.  +. .
T Consensus       284 ~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PD-----ivtlgK~lggG~~PigAv~~~~--~i~d~--~~-~  353 (504)
T PLN02760        284 EKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPD-----LVSLAKALSSAYMPIGAVLVSP--EISDV--IH-S  353 (504)
T ss_pred             HHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCc-----EEEecccccCCccccceEeecH--HHHhh--hh-c
Confidence            368999999999999999999986666421 111122232     6788998654235899999987  44421  11 0


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc---CCCcccccCCCccEEEEEe
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE---IPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~~~~~~~~~~~~g~~~~~~  156 (233)
                      .. .....+....+++.++...+++++.+ +.-.+   +...+..+++-+++.+.|++   .+.+.. ....|. ++-  
T Consensus       354 ~~-~~~~~~~h~~T~~gnPl~~Aaala~L-e~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~v~~-vrG~Gl-~~g--  424 (504)
T PLN02760        354 QS-NKLGSFAHGFTYSGHPVSCAVALEAL-KIYKE---RNIPEHVNKIAPRFQDGIKAFSGSPIIGE-IRGTGL-ILG--  424 (504)
T ss_pred             cc-ccccCcccCCCCCCCHHHHHHHHHHH-HHHHh---CCHHHHHHHHHHHHHHHHHHHhcCCCeee-EEeCce-EEE--
Confidence            00 00000111223333333322444433 11111   12233334444444444433   322211 233333 333  


Q ss_pred             cCCCccccccccccc--CCCCC---hHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLL--EGINS---DTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~--~~~~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                             +.+.....  ....+   -...+...+.++||.+.+..     +.+|++..  .++++++++++++.+++++.
T Consensus       425 -------ie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-----~~lrl~Ppl~it~eeid~~~~~l~~al~~~  492 (504)
T PLN02760        425 -------TEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVAG-----DNIMMSPPLIITPEEVDELISIYGKALKAT  492 (504)
T ss_pred             -------EEEecCCcccccccchhHHHHHHHHHHHhCCcEEEecC-----CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence                   22211100  00000   13344555668899998732     46888855  69999999999999998876


Q ss_pred             h
Q 047983          230 A  230 (233)
Q Consensus       230 ~  230 (233)
                      .
T Consensus       493 ~  493 (504)
T PLN02760        493 E  493 (504)
T ss_pred             H
Confidence            3

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.11  E-value=3.4e-09  Score=93.30  Aligned_cols=183  Identities=15%  Similarity=0.117  Sum_probs=102.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|.||+++.|..+|... .....+.++     +.++||.++. |+.+|.+++++  ++.   .+.  
T Consensus       203 ~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PD-----i~t~gK~lg~-G~p~~av~~~~--~i~---~~~--  269 (395)
T PRK03715        203 QQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPD-----IMTLGKGIGG-GVPLAALLAKA--EVA---VFE--  269 (395)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCc-----eeeehhhhhC-CcceEEEEEcc--ccc---ccc--
Confidence            368999999999999999999876555421 112222332     4688999764 79999999987  332   111  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCCccEEEEEe
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP---CITCPKKPEGSMFVMYC  156 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~  156 (233)
                            .. ....+++.++...+++++.+ +. .++  .+..+.++++-+++.+.|+++.   ++.. .... |..+-  
T Consensus       270 ------~~-~~~~T~~g~pl~~aaala~L-~~-l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~i~~-vrG~-Glm~~--  334 (395)
T PRK03715        270 ------AG-DQGGTYNGNPLMTAVGVAVI-SQ-LLA--PGFLEGVRARGEYLKEKLLELSEERGLEG-ERGE-GLLRA--  334 (395)
T ss_pred             ------CC-CcCCCCCCCHHHHHHHHHHH-HH-HHh--ccHHHHHHHHHHHHHHHHHHHhhcCCcCe-EEcc-eeEEE--
Confidence                  10 11122332222222333333 11 111  2344555555555555555421   2221 2233 33333  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhcc---CEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEE---SIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~---gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                             +.+..       +....+...+.+.   ||.+.+..    .+.+|++...  ++++++++++.|.+.++++
T Consensus       335 -------i~l~~-------~~~~~~~~~~~~~~~~Gi~~~~~~----~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~~  394 (395)
T PRK03715        335 -------LLLGK-------DIGPQIVEKARDMQPDGLLLNAPR----PNLLRFMPALNVTTEEIDQMIAMLRSVLDKL  394 (395)
T ss_pred             -------EEecC-------chHHHHHHHHHhccCCCEEEeecC----CCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence                   33321       1223333444444   99987532    2678997774  8999999999999998764

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=3e-10  Score=98.01  Aligned_cols=192  Identities=13%  Similarity=0.080  Sum_probs=119.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccC--CCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFG--NTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++++++++++..+++.||+++.-..+  |...-.+...++.+..|.+++|+|+|+.+|   ||+++++  .+++   .. 
T Consensus       296 p~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~G---Gyiagsk--~lid---~l-  366 (519)
T KOG1357|consen  296 PEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAG---GYIAGSK--ELID---YL-  366 (519)
T ss_pred             HHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhccccc---ceecCcH--HHHh---hh-
Confidence            37899999999999999999976654  333445556677778899999999999999   9999998  4442   11 


Q ss_pred             hhhhhhHHhhhhhhhh-ccCcchHH----HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEE
Q 047983           79 FHSISLNMRMDDYLLL-SESVYTTV----GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFV  153 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~  153 (233)
                             .....+... +..+++.+    .++..+......+..++..+++.+|..+++..|... ++.++ ..+....+
T Consensus       367 -------rt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~-gfivy-G~~dSpVv  437 (519)
T KOG1357|consen  367 -------RTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM-GFIVY-GNNDSPVV  437 (519)
T ss_pred             -------ccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC-cEEEe-cCCCCCcc
Confidence                   111111111 11112221    333443322345778888999999999999999886 33322 22222111


Q ss_pred             EEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----CCcEEEEeec--CHHHHHHHHHHHHHHH
Q 047983          154 MYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFAV--EPSAFEIGLGRMKAFY  226 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~Rl~~~~--~~~~l~~~~~~l~~~l  226 (233)
                      -         +-+-.+.     .-..+-..+|++ +|.++- .+|..    +..+|+|.++  +.|+++.+++.+...-
T Consensus       438 p---------lll~~~~-----k~~~f~r~~l~~-nigvVv-vgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g  500 (519)
T KOG1357|consen  438 P---------LLLYGPA-----KIVAFSREMLER-NIGVVV-VGFPATPLLESRARFCLSASHTKEDLDRALEVIDRVG  500 (519)
T ss_pred             e---------eeecCcc-----cccHHHHHHHhc-CceEEE-EeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhc
Confidence            1         1011111     145555666654 444442 24543    6788999886  7888888888776554

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.10  E-value=5.2e-09  Score=93.76  Aligned_cols=191  Identities=11%  Similarity=0.084  Sum_probs=105.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++.++|++||+++|.||++..|..+|... .....+.+  .   +-+++|.++ .| +++|.+++.+  ++.+.  +.  
T Consensus       256 ~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~P--D---ivt~gK~lg-gG~~Pigav~~~~--~i~~~--~~--  323 (459)
T PRK11522        256 AVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQP--D---ILCLAKALG-GGVMPIGATIATE--EVFSV--LF--  323 (459)
T ss_pred             HHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCC--C---EEEechhhh-CCCccceeEEEcH--HHHHH--hc--
Confidence            68899999999999999999875555321 11122223  2   338899855 46 6999999987  33321  10  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEEE
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~  155 (233)
                        .   +......+++.++...+++++.+ +.-.+   ....+.++++-+++.+.|++    .+....-.... |.++. 
T Consensus       324 --~---~~~~~~~T~~gnp~~~Aaala~L-~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~-Gl~~g-  392 (459)
T PRK11522        324 --D---NPFLHTTTFGGNPLACAAALATI-NVLLE---QNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGK-GMLMA-  392 (459)
T ss_pred             --c---CCcccCCCCCCCHHHHHHHHHHH-HHHhc---chHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEec-eeEEE-
Confidence              0   00111122222222222333433 21111   12334445555555555544    33111102222 44445 


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHHhh
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~~~  231 (233)
                              +.+..+      +....+...+.++||.+.+..  ...+.+|++...  +++++++++++|.+++++..+
T Consensus       393 --------iel~~~------~~~~~i~~~l~~~Gvl~~~~~--~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~~~~  454 (459)
T PRK11522        393 --------IEFVDN------EIGYNFASEMFRQRVLVAGTL--NNAKTIRIEPPLTLTIEQCEQVLKAARKALAAMRV  454 (459)
T ss_pred             --------EEecCc------hHHHHHHHHHHHCCeEEEecC--CCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHHH
Confidence                    333211      123445555667899997642  124788887764  899999999999999987653

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.10  E-value=2.3e-09  Score=88.21  Aligned_cols=194  Identities=15%  Similarity=0.070  Sum_probs=110.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccC-CccCEEEEccCccccC-CCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-SIVPVLTLGSISKRWI-VPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~-~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|..++++||..+++||+|.-+.++....-+...++ +.+..|..++++|+.| ..|   ||.++|.  .++   .+++
T Consensus       213 ~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~G---Gyttgp~--~li---~llr  284 (417)
T KOG1359|consen  213 EEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASG---GYTTGPK--PLI---SLLR  284 (417)
T ss_pred             HHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCC---CCccCCh--hHH---HHHH
Confidence            5799999999999999999998888654332333233 2355688999999987 677   9999998  444   2221


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                             .+-+.+...++-++... .+..++  +. --.-.......+.+.+++++..+.. ++.. ...+ -..+-   
T Consensus       285 -------qr~RpylFSnslppavV~~a~ka~--dl-lm~s~~~i~~~~a~~qrfr~~me~a-GftI-sg~~-hPI~p---  348 (417)
T KOG1359|consen  285 -------QRSRPYLFSNSLPPAVVGMAAKAY--DL-LMVSSKEIQSRQANTQRFREFMEAA-GFTI-SGAS-HPICP---  348 (417)
T ss_pred             -------hcCCceeecCCCChhhhhhhHHHH--HH-HHhhHHHHHHHHHHHHHHHHHHHhc-Ccee-cCCC-CCccc---
Confidence                   34445544443333333 222222  00 0011233445556666666666553 3321 1110 00111   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC-C--CCcEEEEeec--CHHHHHHHHHHHHHHHHHHh
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG-L--KDWLRITFAV--EPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~--~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~~  230 (233)
                            +-+....     -.......+| +.||.|..-+.-- +  ...+|+.++.  ++++++..++.+.+..+-+.
T Consensus       349 ------v~lGda~-----lA~~~ad~lL-k~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~~~  414 (417)
T KOG1359|consen  349 ------VMLGDAR-----LASKMADELL-KRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFLN  414 (417)
T ss_pred             ------eecccHH-----HHHHHHHHHH-hcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhhc
Confidence                  1122111     1334444555 6699998432211 1  3568887775  89999999999988876543

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.10  E-value=5.2e-09  Score=91.26  Aligned_cols=114  Identities=14%  Similarity=0.195  Sum_probs=68.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccC-CCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWI-VPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+|++|....  +..  ++. +.. +  ++++|+||.++ .+|+|+||++++++ .+.        
T Consensus       152 ~~I~~~a~~~g~~lvVD~t~~~~~--~~~--p~~-~g~-D--ivv~S~sK~l~G~~g~~~G~v~~~~~-~l~--------  214 (366)
T PRK07582        152 AALAAAAHAAGALLVVDNTTATPL--GQR--PLE-LGA-D--LVVASDTKALTGHSDLLLGYVAGRDP-ELM--------  214 (366)
T ss_pred             HHHHHHHHHcCCEEEEECCCCCcc--ccC--chh-cCC-c--EEEecccccccCCCCeeEEEEEcCcH-HHH--------
Confidence            478999999999999999996421  221  221 222 2  78899999874 47899999998652 233        


Q ss_pred             hhhhhHHhhhhhhhh-ccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           80 HSISLNMRMDDYLLL-SESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                            .++...... +..+++....+..    ..-+.+....++..++...+.+.|++.+.+
T Consensus       215 ------~~l~~~~~~~g~~~~~~~a~l~~----r~l~tl~~R~~~~~~na~~la~~L~~~p~v  267 (366)
T PRK07582        215 ------AAVERWRLLAGAIPGPFEAWLAH----RSLGTLGLRFARQCANALAVAELLAGHPAV  267 (366)
T ss_pred             ------HHHHHHHHHhCCCCCHHHHHHHH----hccccHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence                  333322221 2222222111111    111234445567778899999999886544

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.08  E-value=1.2e-08  Score=90.11  Aligned_cols=114  Identities=18%  Similarity=0.137  Sum_probs=74.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCC-CceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVP-GWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|++||+|++|..-.    ...++. ++.+   +++.|.+|.++.+ +...||++++++ ++.        
T Consensus       165 ~~I~~la~~~gi~vIvD~a~a~~~----~~~pl~-~gaD---ivv~S~tK~l~g~~~~~~G~vv~~~~-~l~--------  227 (405)
T PRK08776        165 RFVIEAAHKVGALTVVDNTFLSPA----LQKPLE-FGAD---LVLHSTTKYINGHSDVVGGAVVARDA-ELH--------  227 (405)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccc----cCCccc-ccCC---EEEecCceeecCCCCceEEEEEeCCH-HHH--------
Confidence            378999999999999999998522    122332 3332   8899999998765 588999988663 232        


Q ss_pred             hhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           80 HSISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                            .++..... .+...++. .+.   +....-++++.+.++..+++..+.+.|++.|.+
T Consensus       228 ------~~l~~~~~~~g~~~s~~-~a~---l~~~gl~tl~~r~~~~~~na~~la~~L~~~p~v  280 (405)
T PRK08776        228 ------QQLVWWANALGLTGSPF-DAF---LTLRGLRTLDARLRVHQENADAIAALLDGHAAV  280 (405)
T ss_pred             ------HHHHHHHHhcCCCCCHH-HHH---HHHhhhCcHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence                  22322211 22222222 111   111345678889999999999999999886543

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.07  E-value=7.6e-09  Score=90.96  Aligned_cols=114  Identities=18%  Similarity=0.228  Sum_probs=69.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEE-EEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGW-LVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~-~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+|++|.......    ++ ..+.   -+++.|+||.++.+|.++|+ +++++  +++        
T Consensus       166 ~~I~~la~~~gi~livD~t~~~~~~~~----pl-~~g~---Divv~S~sK~~~g~g~~~GG~vv~~~--~~~--------  227 (390)
T PRK08133        166 AALAEIAHAAGALLVVDNCFCTPALQQ----PL-KLGA---DVVIHSATKYLDGQGRVLGGAVVGSK--ELM--------  227 (390)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCC----ch-hhCC---cEEEeecceeecCCcceEeEEEEcCH--HHH--------
Confidence            478999999999999999997543221    22 1222   37899999999999999955 55554  232        


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                            .++...........++..+. .++ .+ -+.+..+.++..+++..+.+.|++.+.+
T Consensus       228 ------~~~~~~~~~~g~~~~~~~a~-~~l-~g-l~tl~~R~~~~~~~a~~la~~L~~~p~v  280 (390)
T PRK08133        228 ------EEVFGFLRTAGPTLSPFNAW-VFL-KG-LETLSLRMEAHSANALALAEWLEAHPGV  280 (390)
T ss_pred             ------HHHHHHHHHhCCCCCHHHHH-HHH-cc-cchHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence                  22222222111222221211 111 22 2356666677778888999999876543

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.06  E-value=1.2e-08  Score=91.17  Aligned_cols=196  Identities=14%  Similarity=0.045  Sum_probs=101.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|.||++..|...|... .....+.++     +.++||.++...+++|.+++++  ++.+.  +.. .
T Consensus       240 ~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PD-----ivt~gK~l~gG~~P~gav~~~~--~i~~~--~~~-~  309 (442)
T PRK13360        240 RLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPD-----LLTCAKGLTNGAIPMGAVFVSS--EIHDA--FMQ-G  309 (442)
T ss_pred             HHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCc-----eeeeeeccccCccceEEEEEcH--HHHHH--hhc-C
Confidence            68999999999999999999886555321 111222232     3488998654337999999887  34421  110 0


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEI---PCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~g~~~~~~~  157 (233)
                      ... ...+....+++.++...+++.+.+ +.-.++   ...+..+++-+++.+.|+++   +.+.. .... |.+.-   
T Consensus       310 ~~~-~~~~~~~~T~~g~pl~~aaa~a~L-~~l~~~---~l~~~~~~~g~~l~~~l~~l~~~~~v~~-vrG~-Gl~~~---  379 (442)
T PRK13360        310 PEA-GIEFFHGYTYSGHPLACAAALATL-DLYERE---GLLTRAARLAPYWEDALHSLRDAPHVID-IRNL-GLVGA---  379 (442)
T ss_pred             Ccc-ccccccCCCCCCCHHHHHHHHHHH-HHHHhC---CHHHHHHHHHHHHHHHHHHhhcCCCeee-eecc-ceEEE---
Confidence            000 000011122332222222333332 211111   23344455555555555543   22111 1222 33333   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                            +.+..... ........+...+.++||.+.++.     +.+|++..  .+++++++++++|.+.+++.
T Consensus       380 ------~~l~~~~~-~~~~~~~~~~~~l~~~Gvl~~~~~-----~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  441 (442)
T PRK13360        380 ------VELAPRDG-KPGKRAYEVFLKCFEKGLMIRYTG-----DILALSPPLIIEEAQIDELFDILAQALKET  441 (442)
T ss_pred             ------EEEecCCC-CcchhHHHHHHHHHHCCcEEEecC-----CEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence                  22211000 100122334445667899997642     57899844  58999999999999998753

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=3.1e-08  Score=87.28  Aligned_cols=199  Identities=18%  Similarity=0.155  Sum_probs=124.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCcc-ccCCCCceEEEEEecCCCccccccchh--
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISK-RWIVPGWRLGWLVTSDPNGILQDLGVA--   77 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~~~~G~R~G~~~~~~~~~~~~~~~~~--   77 (233)
                      ++|+++|+++|+++++|-+++-    +..+..+..++.+   ++..|--| .+|..|  +|.+.+++  +++++|.=.  
T Consensus       182 ~~I~~la~~~ga~v~VDaaq~~----~h~~idv~~l~~D---f~afsgHKwl~gP~G--iGvLy~r~--~~l~~l~P~~~  250 (405)
T COG0520         182 KEIAELAHEHGALVLVDAAQAA----GHLPIDVQELGCD---FLAFSGHKWLLGPTG--IGVLYVRK--ELLEELEPFLG  250 (405)
T ss_pred             HHHHHHHHHcCCEEEEECcccc----CccCCCchhcCCC---EEEEcccccccCCCc--eEEEEEch--HHHhhcCCccc
Confidence            4799999999999999999886    3334444444444   88999999 555547  89999988  555432000  


Q ss_pred             -----hhhhhhhHHhhh-hhhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC--
Q 047983           78 -----FFHSISLNMRMD-DYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKP--  147 (233)
Q Consensus        78 -----~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--  147 (233)
                           ...+.+...... ....+-.+++...  .++...++-...--++++.++.++..+++.+.|++++++..+.++  
T Consensus       251 gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~  330 (405)
T COG0520         251 GGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDA  330 (405)
T ss_pred             CCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcc
Confidence                 000000000000 0011122223332  233333222222236778888899999999999998887765444  


Q ss_pred             -CccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--------CCcEEEEeec--CHHHHH
Q 047983          148 -EGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--------KDWLRITFAV--EPSAFE  216 (233)
Q Consensus       148 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--------~~~~Rl~~~~--~~~~l~  216 (233)
                       .++.+.+          .++     ++  +...+...|.++||.++.|..+..        ...+|+|+..  +.++++
T Consensus       331 ~r~~~vsF----------~v~-----~~--~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid  393 (405)
T COG0520         331 DRGGIVSF----------NVK-----GI--HPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVD  393 (405)
T ss_pred             cCceEEEE----------EeC-----CC--CHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHH
Confidence             2444443          232     22  566677778888999999876642        3459999996  899999


Q ss_pred             HHHHHHHHHHH
Q 047983          217 IGLGRMKAFYY  227 (233)
Q Consensus       217 ~~~~~l~~~l~  227 (233)
                      ..++.|+++.+
T Consensus       394 ~l~~aL~~~~~  404 (405)
T COG0520         394 RLLEALKKALA  404 (405)
T ss_pred             HHHHHHHHHhh
Confidence            99998887754

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.03  E-value=4.7e-09  Score=91.30  Aligned_cols=204  Identities=15%  Similarity=0.100  Sum_probs=119.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +.|.++|++||..+|.||+...|...-...+.+..+.++     +.+++|. ...|+++|.+.++.  ++++.+.-.   
T Consensus       224 ~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PD-----lttlGKi-IGGGlP~ga~gGr~--eiM~~~~p~---  292 (432)
T COG0001         224 EGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPD-----LTTLGKI-IGGGLPIGAFGGRA--EIMEQLAPL---  292 (432)
T ss_pred             HHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcc-----hhhhhhh-hcCCcceeeeccHH--HHHhhhCCC---
Confidence            468999999999999999999988764456667667675     7899999 77899999999998  555421111   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhh----cCCCcccccCCCccEEEEEe
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLK----EIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~g~~~~~~  156 (233)
                           ..+-+..+++.++.+.+++.+.+ +.-..+  ....+++.+..+.|.+.|+    +. ++.....-.|++|..++
T Consensus       293 -----g~vyqaGT~sgnplamaAG~atl-~~l~~~--~~~y~~l~~~~~~L~~gl~~~~~~~-g~~~~v~~~gsm~~i~F  363 (432)
T COG0001         293 -----GPVYQAGTLSGNPLAMAAGLATL-EELMTE--EGVYERLDALGERLAEGLRAAAERH-GIPLTVNRVGSMFGIFF  363 (432)
T ss_pred             -----CCccccCCCCCcHHHHHHHHHHH-HHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEeeecceEEEEe
Confidence                 22222233444444433333333 110100  0133344444444444443    33 33323445577777655


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHhh
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                      ...++.+..--..  ...+.-..+.. .+.++||.+.|...   +.++ +|.+.++++++..++.+.+++++...
T Consensus       364 ~~~~~~n~~da~~--sd~~~~~~~~~-~~l~~GV~l~ps~~---ea~f-lS~ahte~di~~~~~a~~~~~~~~~~  431 (432)
T COG0001         364 TEEGVRNYADAKR--SDVERFAKFFH-HLLNRGVYLAPSQF---EAGF-LSTAHTEEDIDRTLEAADEAFKELAG  431 (432)
T ss_pred             cCCCCCCHHHHHh--hchHHHHHHHH-HHHhCCcccCCccc---ccee-eecccCHHHHHHHHHHHHHHHHHhhc
Confidence            5433322110000  01101223444 56688999999531   2344 78888999999999999998887653

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.03  E-value=4.8e-09  Score=93.19  Aligned_cols=184  Identities=10%  Similarity=0.102  Sum_probs=101.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++|++||+++|.||++..|..+|..+ .....+.+  .++   +++|.++ .| +.+|.+++++  ++.+.  +.  
T Consensus       230 ~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~P--Di~---t~gK~l~-gG~~p~~av~~~~--~i~~~--~~--  297 (428)
T PRK07986        230 RVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAP--DIL---CLGKALT-GGTMTLSATLTTR--EVAET--IS--  297 (428)
T ss_pred             HHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCCC--CEE---Eechhhh-CCcccCcchhchH--HHHHH--hh--
Confidence            68999999999999999998875555321 11122222  233   6899865 56 5888888876  34321  11  


Q ss_pred             hhhhhHHh----hhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccccCCCccEE
Q 047983           80 HSISLNMR----MDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEI---PCITCPKKPEGSMF  152 (233)
Q Consensus        80 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~g~~  152 (233)
                            ..    +....+++.++...+++.+.+ +.-.++   ..++..+++-+++.+.|+++   +.+.. .... |.+
T Consensus       298 ------~~~~~~~~~~~T~~g~p~~~aaa~a~L-~~i~~~---~~~~~~~~~g~~l~~~l~~l~~~~~i~~-vRg~-Gl~  365 (428)
T PRK07986        298 ------NGEAGCFMHGPTFMGNPLACAVANASL-SLLESG---DWQQQVAAIEAQLREELAPLRDAPMVAD-VRVL-GAI  365 (428)
T ss_pred             ------cCCCCccccCCCCCcCHHHHHHHHHHH-HHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCEEe-Eecc-ceE
Confidence                  10    011122232222222333332 211111   23444444445555555443   22211 1222 444


Q ss_pred             EEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEE--eecCHHHHHHHHHHHHHHHHHH
Q 047983          153 VMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRIT--FAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~--~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                      +-         +.+..+      .....+...+.++||.+.|..     +.+|++  +..+++++++++++|.+.+++.
T Consensus       366 ~~---------ve~~~~------~~~~~~~~~l~~~Gl~~~~~g-----~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~  424 (428)
T PRK07986        366 GV---------VETTRP------VNMAALQRFFVEQGVWIRPFG-----KLIYLMPPYIILPEQLQRLTAAVNRAVQDE  424 (428)
T ss_pred             EE---------EEeCCc------ccHHHHHHHHHHCCcEEEecC-----CEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence            44         333221      123455666778899998742     578885  4469999999999999998653

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.02  E-value=1.1e-08  Score=89.74  Aligned_cols=117  Identities=15%  Similarity=0.102  Sum_probs=72.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceE-EEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~-G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|+++|+++|+|++|....+.    .++. .+.   -+++.|+||.++++|.|+ ||+++++  +++++  ..  
T Consensus       166 ~~I~~la~~~g~~vivD~a~a~~~~~----~pl~-~g~---Div~~S~sK~l~g~g~~~gG~v~~~~--~~i~~--~~--  231 (386)
T PRK06767        166 KQVIRVAKRNGLLVIVDNTFCSPYLQ----RPLE-LGC---DAVVHSATKYIGGHGDVVAGVTICKT--RALAE--KI--  231 (386)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccC----Cchh-cCC---cEEEecCcceecCCCCceeEEEEeCh--HHHHH--HH--
Confidence            47899999999999999999753322    1221 222   277889999999999996 8999887  33321  11  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITC  143 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  143 (233)
                            ...+.  ..+...++..+++ .+  .. -+.+..+.+..++++..+.+.|++.|++..
T Consensus       232 ------~~~~~--~~g~~~~~~~a~l-~~--~~-L~tl~~r~~~~~~~a~~la~~L~~~p~v~~  283 (386)
T PRK06767        232 ------RPMRK--DIGGIMAPFDAWL-LL--RG-LKTLAVRMDRHCDNAEKIVSFLKNHDAVEG  283 (386)
T ss_pred             ------HHHHH--HhCCCCCHHHHHH-HH--cC-CCcHHHHHHHHHHHHHHHHHHHHcCCCccE
Confidence                  11111  1222222221111 11  11 123345667779999999999999877653

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.02  E-value=1.9e-08  Score=88.64  Aligned_cols=114  Identities=18%  Similarity=0.231  Sum_probs=68.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEE-EEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGW-LVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~-~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|+++|+++|+|++|....+..    ++ ..   ...+++.|+||.++++|+|+|+ +++++  +.++       
T Consensus       170 ~~I~~la~~~gi~lvvD~a~a~~~~~~----~~-~~---gaDivv~S~sK~l~g~g~~~GG~vv~~~--~~i~-------  232 (398)
T PRK07504        170 AAVAKIANQAGAKLVVDNVFATPLFQK----PL-EL---GAHIVVYSATKHIDGQGRCLGGVVLSDK--AWIE-------  232 (398)
T ss_pred             HHHHHHHHHcCCEEEEECCccccccCC----ch-hh---CCCEEEeeccccccCCccceEEEEEeCc--HHHH-------
Confidence            378999999999999999998654321    12 12   2347899999999999999975 54444  2221       


Q ss_pred             hhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           80 HSISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                            ..++.+.. .+...++. .+...+   ..-+.+..+.++..++...+.+.|++.+.+
T Consensus       233 ------~~~~~~~~~~g~~~s~~-~A~~~l---~~L~tl~~R~~~~~~na~~la~~L~~~p~v  285 (398)
T PRK07504        233 ------EHLQDYFRHTGPSLSPF-NAWTLL---KGLETLPVRVRQQTESAAAIADFLAGHPKV  285 (398)
T ss_pred             ------HHHHHHHHHhCCCCCHH-HHHHHH---hccchHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence                  12222212 22222222 111111   122334555566678888888888876543

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.02  E-value=2.2e-08  Score=87.81  Aligned_cols=112  Identities=18%  Similarity=0.243  Sum_probs=69.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceE-EEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~-G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|+++|+++|+|++|.......    ++ ..+   .-|++.|+||.++++|.++ |++++++  +++        
T Consensus       159 ~~I~~la~~~gi~livD~a~~~~~~~~----pl-~~g---~Divv~S~sK~l~g~g~~~gG~vv~~~--~~~--------  220 (380)
T TIGR01325       159 AALAELAHAIGALLVVDNVFATPVLQQ----PL-KLG---ADVVVYSATKHIDGQGRVMGGVIAGSE--ELM--------  220 (380)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCC----ch-hhC---CCEEEeeccceecCCCCeEEEEEEeCH--HHH--------
Confidence            478999999999999999998654321    22 122   2377889999999999887 6676665  333        


Q ss_pred             hhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047983           80 HSISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC  140 (233)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  140 (233)
                            ..++.... .+.. .++..+...+   ..-+.+..+.+...++++.+.+.|++.|.
T Consensus       221 ------~~l~~~~~~~g~~-~~p~~a~~~l---~~l~tl~~r~~~~~~~a~~la~~L~~~p~  272 (380)
T TIGR01325       221 ------AEVAVYLRHTGPA-MSPFNAWVLL---KGLETLSLRMQKQFDSALAIAEWLQAQPQ  272 (380)
T ss_pred             ------HHHHHHHHhhCCC-CCHHHHHHHH---hccCcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence                  22222221 2222 2222222221   22344555677788888888899987664

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.02  E-value=4.8e-09  Score=93.45  Aligned_cols=190  Identities=11%  Similarity=0.062  Sum_probs=97.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++.++|++||+++|.||++..|..+|.- ......+-.+.   +-+++|.++ .| +++|.+++++  ++.+.  +.   
T Consensus       249 ~l~~lc~~~g~llI~DEV~tG~GRtG~~-~a~e~~gv~PD---ivt~gK~lg-~G~~Pigavv~~~--~i~~~--~~---  316 (442)
T TIGR03372       249 AVRALCDEFGALLILDEVQTGMGRTGKM-FACEHEGVQPD---ILCLAKALG-GGVMPIGATIATE--AVFSV--LF---  316 (442)
T ss_pred             HHHHHHHHcCCEEEEeecccCCCccccc-hhhhhcCCCCC---eeeehhhhc-CCcccceEEEecH--HHHHh--hh---
Confidence            6899999999999999999987655532 11111221122   336899965 57 6999999886  34321  10   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEE-EFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                          ........+++.++.+.+++++.+ +.-.+ +..++.++.-...++.|.+...+.+....-.... |.++.     
T Consensus       317 ----~~~~~~~~T~~gnp~~~Aaa~a~L-~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~-Gl~~g-----  385 (442)
T TIGR03372       317 ----DNPFLHTTTFGGNPLACAAALATI-NELLEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGK-GLLMA-----  385 (442)
T ss_pred             ----ccCccccCCCCCCHHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecc-eEEEE-----
Confidence                000011122322233322333433 11111 1222222222222222322222243221112333 55555     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l  226 (233)
                          +.+..+      .....+...+.++||.+.+...  ..+.+|+...  .+++++++++++|.+.+
T Consensus       386 ----iel~~~------~~~~~i~~~l~~~Gvl~~~~~~--~~~~lr~~Ppl~~t~~~id~~~~~l~~~~  442 (442)
T TIGR03372       386 ----IEFRDN------EIGYAFAKELFQQNILVAGTLN--NAKSIRIEPPLTITIEQCALVIKAAKDAL  442 (442)
T ss_pred             ----EEeCCh------HHHHHHHHHHHHCCcEEeecCC--CCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence                334211      1234455556678999975321  2468888666  48999999999998753

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK06105 aminotransferase; Provisional

Probab=99.02  E-value=1.5e-08  Score=90.86  Aligned_cols=192  Identities=15%  Similarity=0.082  Sum_probs=102.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|.||++..|...|.-+ .....+.++     +.++||.++...+++|.+++++  ++.+.  +.   
T Consensus       243 ~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PD-----i~~~gK~lggG~~P~~av~~~~--~i~~~--~~---  310 (460)
T PRK06105        243 KIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPD-----ILVMSKQLSSSYQPLSAVLMNE--KVYDP--IA---  310 (460)
T ss_pred             HHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCC-----eeeeecccccCcccceEEEEcH--HHHHH--Hh---
Confidence            68899999999999999999886665321 111122222     5588998665336999999987  34321  10   


Q ss_pred             hhhhHHh---hhhh-hhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc---CCCcccccCCCccE
Q 047983           81 SISLNMR---MDDY-LLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKE---IPCITCPKKPEGSM  151 (233)
Q Consensus        81 ~~~~~~~---~~~~-~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~~~~~~~~~~~~g~  151 (233)
                           ..   .... ...+.+.++..  ++++.+ +.-.++   +..+..++.-+++.+.|++   .+.+.. .... |.
T Consensus       311 -----~~~~~~~~~~h~~T~~gnpl~~aaa~a~L-~~i~~~---~l~~~v~~~g~~l~~~L~~l~~~~~v~~-vrG~-Gl  379 (460)
T PRK06105        311 -----DESGKIGTFGHGFTASGHPVAAAVALENL-AIIEER---DLVGNAAERGARLQARLRALADHPLVGE-VRGV-GL  379 (460)
T ss_pred             -----cccccCcccccCCCCCCCHHHHHHHHHHH-HHHHhc---cHHHHHHHHHHHHHHHHHHhhcCCCeEE-EEec-ce
Confidence                 00   0000 11222333333  333333 111111   2233333333344444433   332221 2333 44


Q ss_pred             EEEEecCCCccccccccccc--CCCCC---hHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHH
Q 047983          152 FVMYCGSEDKCLLKLNYSLL--EGINS---DTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKA  224 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~  224 (233)
                      ++-         +.+.....  .+..+   ....+...+.++||.+.|..     +.+|++..  .++++++++++++.+
T Consensus       380 ~~g---------ie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~g-----~~i~l~Ppl~it~~eid~~~~~l~~  445 (460)
T PRK06105        380 IAA---------VELVADKATKTPFEPPGKVGARANAAAHEHGVISRAMG-----DTLAFCPPLIITAAQVDEMVDRFGR  445 (460)
T ss_pred             EEE---------EEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEecC-----CEEEEECCCccCHHHHHHHHHHHHH
Confidence            444         22321100  00000   12345556678899998732     57888755  489999999999999


Q ss_pred             HHHHHh
Q 047983          225 FYYRHA  230 (233)
Q Consensus       225 ~l~~~~  230 (233)
                      .+++..
T Consensus       446 ~l~~~~  451 (460)
T PRK06105        446 ALDDVA  451 (460)
T ss_pred             HHHHHH
Confidence            998764

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.01  E-value=1.9e-08  Score=89.85  Aligned_cols=196  Identities=13%  Similarity=0.070  Sum_probs=104.7

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|.||+++.|..+|... .....+.++     +.++||.++...+++|.+++++  ++++.  +.  .
T Consensus       243 ~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PD-----i~~~gK~l~gG~~Pi~av~~~~--~i~~~--~~--~  311 (445)
T PRK09221        243 RLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPD-----IITFAKGLTNGAIPMGAVIASD--EIYDA--FM--Q  311 (445)
T ss_pred             HHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCC-----EEEeccccccCcccceeeEEcH--HHHHh--hc--c
Confidence            68999999999999999999876555321 111222332     4588998654337899999887  34421  11  0


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEI---PCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~g~~~~~~~  157 (233)
                      .......+....+++.++...+++++.+ +.-.+   ....+..++.-+++.+.|+++   +.+.. .... |...-   
T Consensus       312 ~~~~~~~~~~~~T~~~~pl~~aaa~a~L-~~i~~---~~l~~~~~~~g~~l~~~l~~l~~~~~v~~-vrg~-Gl~~~---  382 (445)
T PRK09221        312 GPEYAIEFFHGYTYSAHPVACAAGLATL-DIYRE---EDLFERAAELAPYFEDAVHSLKGLPHVID-IRNI-GLVAG---  382 (445)
T ss_pred             CcccccccccccCCCcCHHHHHHHHHHH-HHHHh---ccHHHHHHHHHHHHHHHHHhhccCCCEEE-EecC-ceEEE---
Confidence            0000000111122332222222333332 21111   123455566666666666554   22211 2222 33343   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                            +.+..... ........+.+.+.++||.+.++.     +.+|++..  .+++++++++++|.+.+.+.
T Consensus       383 ------v~~~~~~~-~~~~~~~~~~~~~~~~Gv~~~~~~-----~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  444 (445)
T PRK09221        383 ------IELAPRPG-APGARGYEAFMKCFEKGLLVRYTG-----DTIALSPPLIIEKAQIDELVDALGDALRAV  444 (445)
T ss_pred             ------EEEecccc-cccchHHHHHHHHHHCCeEEeecC-----CEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence                  22321100 000122344555668899997642     57899844  58999999999999998764

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.01  E-value=1.6e-08  Score=86.45  Aligned_cols=190  Identities=16%  Similarity=0.183  Sum_probs=124.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccC--CccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG--SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      |||.+++.+||.+-+.||++.--.|++... -+..-+  .+..-|..+++.|+||.-|   |||++..        .++ 
T Consensus       323 eelcDvah~yGAiTFlDEVHAVGlYG~rGa-GvgerdGvm~kvDiIsGTLgKafGcVG---GYIAat~--------~Lv-  389 (570)
T KOG1360|consen  323 EELCDVAHKYGAITFLDEVHAVGLYGPRGA-GVGERDGVMHKVDIISGTLGKAFGCVG---GYIAATR--------KLV-  389 (570)
T ss_pred             HHHHHHHHHhCceeeeehhhhhccccCCCC-CccccCCcchhhhhcccchhhhccccc---ceehhhh--------hHH-
Confidence            689999999999999999999777765332 111111  1222377899999999999   9999988        444 


Q ss_pred             hhhhhhHHhhhhhhh---hccCcchH-H-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEE
Q 047983           79 FHSISLNMRMDDYLL---LSESVYTT-V-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFV  153 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~---~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~  153 (233)
                             +.++++.-   ++.+.++. . .+++++ .....++-+.+|+.-+++..++.+.|.++ ++.+...|  .-.+
T Consensus       390 -------DmiRSyAaGFIFTTSLPP~vl~GAleaV-r~lk~~eg~~lR~~hqrnv~~~kq~l~~~-GiPVi~~p--SHIi  458 (570)
T KOG1360|consen  390 -------DMIRSYAAGFIFTTSLPPMVLAGALEAV-RILKSEEGRVLRRQHQRNVKYVKQLLMEL-GIPVIPNP--SHII  458 (570)
T ss_pred             -------HHHHHhcCceEEecCCChHHHHhHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHc-CCcccCCC--ccee
Confidence                   55565522   23333333 2 444443 11223456778888899999999999886 44432233  2222


Q ss_pred             EEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----CCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 047983          154 MYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFAV--EPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~Rl~~~~--~~~~l~~~~~~l~~~l~  227 (233)
                      -         +++....     -..+...-++.+++|.|-. ..|..    +..+||+-++  +++.++..++.+..+..
T Consensus       459 P---------v~vgda~-----l~~~~sd~Li~~h~iYvQa-INyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~  523 (570)
T KOG1360|consen  459 P---------VRVGDAA-----LAKQASDILISKHNIYVQA-INYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWN  523 (570)
T ss_pred             e---------eeccCHH-----HHHHHHHHHHHhcCeEEEe-ccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHH
Confidence            2         2233221     1456677788899999975 34442    5678988775  78888888888877766


Q ss_pred             HH
Q 047983          228 RH  229 (233)
Q Consensus       228 ~~  229 (233)
                      +.
T Consensus       524 ~v  525 (570)
T KOG1360|consen  524 EV  525 (570)
T ss_pred             Hc
Confidence            54

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.01  E-value=9.1e-09  Score=91.50  Aligned_cols=180  Identities=12%  Similarity=0.062  Sum_probs=100.8

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCc-eEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGW-RLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~-R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++|++||+.+|+||++.++..+|..+ .....+.+  .++   ++||.++ .|+ .++.+++++  ++.        
T Consensus       233 ~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~p--Di~---~~gK~l~-gG~~p~~a~~~~~--~~~--------  296 (427)
T TIGR00508       233 RVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVP--DIL---CVGKALT-GGYMTLSATVTTD--KVA--------  296 (427)
T ss_pred             HHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCC--CEE---Eechhhh-cCcccceEEEEcH--HHH--------
Confidence            68999999999999999998876655432 11222333  233   4799974 574 778888776  333        


Q ss_pred             hhhhhHHhhhh--------hhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc--cCCCc
Q 047983           80 HSISLNMRMDD--------YLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCP--KKPEG  149 (233)
Q Consensus        80 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~  149 (233)
                            ..+..        ..+++.++...+++++.+ +.-.+   .+..+.++++-+++.+.|+++......  .... 
T Consensus       297 ------~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l-~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~-  365 (427)
T TIGR00508       297 ------QTISSGEAGCFMHGPTFMGNPLACAVAEASL-AILLE---GEWQKQVSAIENQLKRELSPLRKNPVVKDVRVL-  365 (427)
T ss_pred             ------HHHhcCCCCccccCCCCCcCHHHHHHHHHHH-HHHHh---CCHHHHHHHHHHHHHHHHHHhhcCCCEEeEecc-
Confidence                  22211        112222222222333333 21111   123455666666666666554221100  1122 


Q ss_pred             cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHH
Q 047983          150 SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       150 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~  227 (233)
                      |..+-         +.+..+      .....+.+.+.++||.+.+..     +.+|++..  .++++++++++.+.+.++
T Consensus       366 G~~~~---------i~~~~~------~~~~~~~~~l~~~Gv~~~~~~-----~~l~~~ppl~~t~~~id~~~~~l~~~l~  425 (427)
T TIGR00508       366 GAIGV---------VEMYKP------VNVEELQKKFVEQGVWIRPFG-----KLIYVMPPYIITTEQLQKLTAALIEALH  425 (427)
T ss_pred             ccEEE---------EEECCc------cCHHHHHHHHHHCCeEEEecC-----CEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            33333         233211      123445556668899997632     46888666  589999999999999886


Q ss_pred             H
Q 047983          228 R  228 (233)
Q Consensus       228 ~  228 (233)
                      +
T Consensus       426 ~  426 (427)
T TIGR00508       426 E  426 (427)
T ss_pred             c
Confidence            5

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK07480 putative aminotransferase; Validated

Probab=99.01  E-value=1.3e-08  Score=91.17  Aligned_cols=200  Identities=13%  Similarity=0.097  Sum_probs=101.7

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++|++||+++|.||++..|..+|... .....+.++     +-+++|..+ .| +++|.+++++  ++.+.  +.. 
T Consensus       244 ~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PD-----iv~~gK~l~-gG~~Pi~av~~~~--~i~~~--~~~-  312 (456)
T PRK07480        244 EIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPD-----LMTIAKGLT-SGYIPMGAVGVGD--RVAEV--LIE-  312 (456)
T ss_pred             HHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCC-----eeeeehhhc-cCCccceEEEEcH--HHHHH--Hhc-
Confidence            68999999999999999999986665321 112222232     457899855 47 4899999987  34321  100 


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHH---hhcCCCcccccCCCccEEEEE
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEE-EFFSKITDILREAADICCDR---LKEIPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~---L~~~~~~~~~~~~~~g~~~~~  155 (233)
                      .    ...+....+++.++...+++++.+ +.-.+ +.+++.+   ++.-+.+.+.   +.+.+.+.. ....|.++..-
T Consensus       313 ~----~~~~~~~~T~~gnpl~~Aaa~a~L-~~l~~~~l~~~~~---~~~g~~l~~~l~~l~~~~~i~~-vrG~Glm~gie  383 (456)
T PRK07480        313 E----GGEFNHGFTYSGHPVAAAVALANL-RILRDEGIVERVR---DDTGPYLQKRLRELADHPLVGE-VRGVGLVGAIE  383 (456)
T ss_pred             C----CCCcccCCCCCcCHHHHHHHHHHH-HHHHhCCHHHHHH---HHHHHHHHHHHHHhhcCCCeee-EEeecceEEEE
Confidence            0    000112223333333332444433 11111 1222221   1222222222   333332221 33444443331


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHHhh
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~~~  231 (233)
                      +-++.+..  -+..   ........+...+.++||.+.+.   +  +.+|++...  +++++++++++|.+.+.+.++
T Consensus       384 ~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~Gll~~~~---~--~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~  451 (456)
T PRK07480        384 LVKDKATR--ERFE---AGGGVGTICRDHCFANGLIMRAV---G--DRMIISPPLVITHAEIDELVEKARKALDATAA  451 (456)
T ss_pred             Eecccccc--ccCc---chhhHHHHHHHHHHHCCcEEeec---C--CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            11110000  0000   00011244555666889999763   1  568887764  899999999999999988754

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.00  E-value=1.1e-08  Score=90.86  Aligned_cols=189  Identities=13%  Similarity=0.054  Sum_probs=101.8

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++|++||+++|.||++..|..+|... .....+.+  .++   +++|.++ .| +.++-+++++  ++.+.  +.  
T Consensus       232 ~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~P--Div---~~gK~l~-gG~~p~~a~~~~~--~i~~~--~~--  299 (429)
T PRK06173        232 KARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVP--DIM---CIGKALT-GGYLTLSATITTE--AIAQT--IC--  299 (429)
T ss_pred             HHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCCC--CEE---Eeehhhh-CCccccceEEecH--HHHHH--Hh--
Confidence            68999999999999999998875555321 11122222  223   4999865 46 4788888776  33321  10  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc--cCCCccEEEEEec
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCP--KKPEGSMFVMYCG  157 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~g~~~~~~~  157 (233)
                        .+....+....+++.++...+++++.+ +.-.+   ...++.++++-+++.+.|+++.+....  .... |..+-   
T Consensus       300 --~~~~~~~~~~~T~~g~p~~~aaa~a~l-~~i~~---~~~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~-Gl~~~---  369 (429)
T PRK06173        300 --SGEAKCFMHGPTFMANPLACAIAAESI-RLLLE---SPWQQNIQRIEAQLKQELAPAAEFDSVAEVRVL-GAIGV---  369 (429)
T ss_pred             --cCCCCccccCCCCCcCHHHHHHHHHHH-HHHHh---CCHHHHHHHHHHHHHHHHHHhhcCCCeeeeecc-ceEEE---
Confidence              000000011112222222221333333 11111   123455555556666666543122111  1222 44444   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                            +.+..+      .....+.+.|.++||.+.+..     +.+|+...  .+++++++++++|.+.+.+.
T Consensus       370 ------iel~~~------~~~~~i~~~l~e~Gi~v~~~g-----~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~  426 (429)
T PRK06173        370 ------VEMKEP------VNMATLQPRFVEHGIWVRPFG-----KLVYIMPPFIISPDELSQLTSGLLRVLKQE  426 (429)
T ss_pred             ------EEeCCc------ccHHHHHHHHHHCCeEEEecC-----CEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence                  333221      133455666778899998742     57888655  48999999999999999764

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.00  E-value=2.5e-09  Score=92.58  Aligned_cols=184  Identities=13%  Similarity=0.024  Sum_probs=103.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|+++|+++|+|+++..-.    .+..+.   .+.--+++.|..|.++.+|  +|++++++.  ........   
T Consensus       158 ~~I~~l~~~~~~~~ivD~a~~~g~----~~~~~~---~~~~D~~~~s~~K~~gp~g--~g~l~~~~~--~~~~~~~~---  223 (353)
T TIGR03235       158 REIAEVLEAHEAFFHVDAAQVVGK----ITVDLS---ADRIDLISCSGHKIYGPKG--IGALVIRKR--GKPKAPLK---  223 (353)
T ss_pred             HHHHHHHHHcCCEEEEEchhhcCC----cccccc---ccCCCEEEeehhhcCCCCc--eEEEEEccC--cccccccC---
Confidence            478999999999999999977522    122222   2222367778899876666  899998873  21100000   


Q ss_pred             hhhhHHhhhhhhhhccC-cchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           81 SISLNMRMDDYLLLSES-VYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                      .........  ..+..+ ++... .++.+.++. ..+..++.+++++++++.+++.|++ .++....++......+    
T Consensus       224 ~~~~~~~~~--~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~i----  295 (353)
T TIGR03235       224 PIMFGGGQE--RGLRPGTLPVHLIVGMGEAAEI-ARRNAQAWEVKLRAMRNQLRDALQT-LGVKLNGDPAETIPHI----  295 (353)
T ss_pred             ceeeCCCCc--CccccCCCChHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcccccCCE----
Confidence            000000000  001111 12222 333333321 2235677888999999999999987 3554322332221112    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCC----CcEEEEeecCHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLK----DWLRITFAVEPSAFEI  217 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~----~~~Rl~~~~~~~~l~~  217 (233)
                           +.+..+   ++  +.+.+...|++ +|.|.+|..|+..    .++|.+++.+++.+..
T Consensus       296 -----~~~~~~---~~--~~~~v~~~L~~-~i~v~~g~~~~~~~~~~~~~l~~~g~~~~~~~~  347 (353)
T TIGR03235       296 -----LNFSID---GV--NSEALIVNLRA-DAAVSTGSACSSSKYEPSHVLQAMGLDTDRARG  347 (353)
T ss_pred             -----EEEEeC---Cc--CHHHHHHHHhC-CeEEEchhhcCCCCCCCCHHHHHcCCCHHHhCc
Confidence                 112222   22  45667777765 9999999999753    3788888887665443

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.00  E-value=1.8e-08  Score=90.27  Aligned_cols=190  Identities=16%  Similarity=0.101  Sum_probs=101.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|.||++..|..+|... .....+.+  .++   +++|.++ .|+.+|.+++++  ++.        
T Consensus       246 ~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~P--Div---~~gK~l~-gG~pi~av~~~~--~i~--------  309 (457)
T PRK05639        246 KELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKP--DLI---IFGKGVA-SGMGLSGVIGRK--ELM--------  309 (457)
T ss_pred             HHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCC--CEE---Eechhhc-CCCcceeEEehH--HHH--------
Confidence            368999999999999999999875555321 11122223  233   3899855 479999999987  333        


Q ss_pred             hhhhhHHhhhhhhhhccCcchHH--HHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEE
Q 047983           80 HSISLNMRMDDYLLLSESVYTTV--GAVPQILEKT-EEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMF  152 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~  152 (233)
                            +........+.+.++..  ++++.+ +.- .++.++    ..+++-+++.+.|++    .+.+.. ....| .+
T Consensus       310 ------~~~~~~~~~T~~g~p~~~aaa~a~l-~~l~~~~l~~----~~~~~g~~l~~~L~~l~~~~~~~~~-VrG~G-l~  376 (457)
T PRK05639        310 ------DLTSGSALLTPAANPVISAAAEATL-EIIEEENLLK----NALKVGEFIKKRLLEMKESFEVIGD-VRGKG-LM  376 (457)
T ss_pred             ------hhcCCCcccCCCcCHHHHHHHHHHH-HHHHHccHHH----HHHHHHHHHHHHHHHHHHhCCCEEe-eccce-eE
Confidence                  21110111222333332  333332 211 112222    222233333333333    322221 33333 33


Q ss_pred             EEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHHh
Q 047983          153 VMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~  230 (233)
                      +.         +.+..+...+.......+.+.+.++||.+.+....  .+.+|+...  .+++++++++++|.+.+++..
T Consensus       377 ~g---------ve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~g~~--~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~~  445 (457)
T PRK05639        377 IG---------VEIVKENGKPDPELTGKICWRAFELGLILPSYGMF--GNVIRITPPLVITKEIAEKGLEIMERAIKDAL  445 (457)
T ss_pred             EE---------EEEecCCCCCCHHHHHHHHHHHHhCCeEEeecCCC--CCEEEEeCCCccCHHHHHHHHHHHHHHHHHHH
Confidence            33         22211110000012344555566789999764211  468888766  489999999999999997753

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.00  E-value=2.3e-08  Score=87.35  Aligned_cols=114  Identities=15%  Similarity=0.122  Sum_probs=71.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+|++|....+.    .++ ..   ...+++.|+||.++++| .+.||+++++. +++        
T Consensus       145 ~~i~~la~~~g~~livD~t~~~~~~~----~~~-~~---g~Divv~S~tK~l~g~~~~~gG~v~~~~~-~l~--------  207 (369)
T cd00614         145 EAIAELAHEHGALLVVDNTFATPYLQ----RPL-EL---GADIVVHSATKYIGGHSDVIAGVVVGSGE-ALI--------  207 (369)
T ss_pred             HHHHHHHHHcCCEEEEECCCcchhcC----Chh-hh---CCcEEEeccceeccCCCCceEEEEEeCcH-HHH--------
Confidence            37899999999999999999865431    112 11   33488999999988776 89999999762 233        


Q ss_pred             hhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           80 HSISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                            .+++.... ++...++...++ .+  ... +.+....++..++++.+.+.|++.+.+
T Consensus       208 ------~~l~~~~~~~g~~~~p~~a~~-~l--~~l-~tl~~r~~~~~~na~~la~~L~~~~~v  260 (369)
T cd00614         208 ------QRLRFLRLALGTILSPFDAWL-LL--RGL-KTLPLRMERHSENALKVAEFLEKHPKV  260 (369)
T ss_pred             ------HHHHHHHHhhCCCCCHHHHHH-HH--cCC-CCHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence                  22222211 222223222111 11  111 234456677788999999999887644

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK08297 L-lysine aminotransferase; Provisional

Probab=98.98  E-value=1e-08  Score=91.57  Aligned_cols=191  Identities=13%  Similarity=0.145  Sum_probs=94.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++|.||+++.|..+|... .....+-...++   +++|.++     +|.+++.+  .+.   .+..  
T Consensus       249 ~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-a~~~~gv~PDiv---~~gK~l~-----~~a~l~~~--~i~---~~~~--  312 (443)
T PRK08297        249 AAMRELCDEHDALLIFDEVQTGVGLTGTAW-AYQQLGVRPDIV---AFGKKTQ-----VCGIMAGR--RVD---EVED--  312 (443)
T ss_pred             HHHHHHHHHcCCEEEEechhhccCccchHH-HHHhcCCCCCEE---Eeccccc-----ccceecch--HHH---Hhhh--
Confidence            368999999999999999999986665321 111122122233   6899753     23333333  111   0110  


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEK-TEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                      .. .........+++.++.+.+++.+.+ +. ..++..++.++.-+..++.+.+..++.+.+....... |.++.     
T Consensus       313 ~~-~~~~~~~~~T~~gnpl~~aaa~a~L-~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~-G~~~~-----  384 (443)
T PRK08297        313 NV-FAVSSRINSTWGGNLVDMVRARRIL-EVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGR-GLMCA-----  384 (443)
T ss_pred             hh-ccCccccCCCCCccHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeecc-ceEEE-----
Confidence            00 0000112223333333322333333 11 1112233333332233333333323344332113444 44444     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEE--EeecCHHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRI--TFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl--~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                          +.++..      .....+...+.++||.+.|+.    .+.+|+  ++..+++++++++++|.+++.+.
T Consensus       385 ----i~~~~~------~~~~~~~~~l~~~Gvl~~~~~----~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~  442 (443)
T PRK08297        385 ----FDLPTT------ADRDEVIRRLWEEGVLVLPCG----ERSIRFRPALTVTTEEIDAAIDALRRALPEV  442 (443)
T ss_pred             ----EEecCH------HHHHHHHHHHHHCCEEEecCC----CCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence                334311      123344455558899998853    256788  45568999999999999998764

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=98.97  E-value=5.5e-08  Score=87.17  Aligned_cols=194  Identities=12%  Similarity=0.077  Sum_probs=113.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCc-cccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTH-FVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|+++|+++++|.+++--...... +.++.     .--+++.|..|++++|.  -|++.+++  .+.+  .+.   
T Consensus       201 ~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~-----~~D~l~~S~hK~l~GP~--Gg~l~~~~--~~~~--~l~---  266 (452)
T PTZ00094        201 RFREICDSVGAYLMADIAHTSGLVAAGVLPSPFP-----YADVVTTTTHKSLRGPR--SGLIFYRK--KVKP--DIE---  266 (452)
T ss_pred             HHHHHHHHcCCEEEEeccchhccccCCCCCCCCC-----CCcEEEcCCccCCCCCC--ceEEEEec--ccch--HHH---
Confidence            6889999999999999999964443321 11221     12288999999764333  38888865  2321  111   


Q ss_pred             hhhhHHhhhhhh--hhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYL--LLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                           ..+....  .+..+++... ++++..++.-.....++.++.+.++.+++.+.|.+. ++.............   
T Consensus       267 -----~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~-g~~v~~~~~~~~~~~---  337 (452)
T PTZ00094        267 -----NKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR-GYDLVTGGTDNHLVL---  337 (452)
T ss_pred             -----HhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC-CcEEecCCCCCceEe---
Confidence                 1221111  1111222222 444443322222345677889999999999999775 443222111112233   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEE-ECCcccCC----CCcEEEEeec------CHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIV-LPGITVGL----KDWLRITFAV------EPSAFEIGLGRMKAFY  226 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v-~pg~~f~~----~~~~Rl~~~~------~~~~l~~~~~~l~~~l  226 (233)
                            +.+...   ++  +...+...|.++||.+ .+|.....    .+++|+++..      ++++++.+.+.|.+.+
T Consensus       338 ------v~~~~~---~~--~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~  406 (452)
T PTZ00094        338 ------VDLRPF---GI--TGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAV  406 (452)
T ss_pred             ------ecCCcC---CC--CHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence                  223222   22  5567777788889999 44433321    4789998864      3789999999999888


Q ss_pred             HHH
Q 047983          227 YRH  229 (233)
Q Consensus       227 ~~~  229 (233)
                      ...
T Consensus       407 ~~~  409 (452)
T PTZ00094        407 KLA  409 (452)
T ss_pred             HHH
Confidence            753

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=98.97  E-value=4.2e-08  Score=85.47  Aligned_cols=198  Identities=17%  Similarity=0.113  Sum_probs=108.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|+++|+++|+|++++....    +..+.   ...--+++.|..|.++.|. -+|.++.++.. .++.+......
T Consensus       157 ~~i~~l~~~~~~~livD~a~~~g~~----~~~~~---~~~~D~~~~s~~K~l~~p~-g~g~l~~~~~~-~~~~~~~~~~~  227 (376)
T TIGR01977       157 EEIGELAQENGIFFILDAAQTAGVI----PIDMT---ELAIDMLAFTGHKGLLGPQ-GTGGLYIREGI-KLKPLKSGGTG  227 (376)
T ss_pred             HHHHHHHHHcCCEEEEEhhhccCcc----CCCch---hcCCCEEEecccccccCCC-CceEEEEcCCc-CcCceecCCCc
Confidence            3789999999999999999986322    11121   1222378899999765443 25676666531 22211100000


Q ss_pred             --hhhhH--HhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC---CccEE
Q 047983           81 --SISLN--MRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKP---EGSMF  152 (233)
Q Consensus        81 --~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---~~g~~  152 (233)
                        .....  .........+ .++... .++...++...+.-.+.++++.++..+.+.+.|++.+++..+.+.   ..+..
T Consensus       228 ~~~~~~~~~~~~~~r~~~~-t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~  306 (376)
T TIGR01977       228 SHSALIDQPSELPDRFESG-TLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGV  306 (376)
T ss_pred             cccccccccccchhhccCC-CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCe
Confidence              00000  0000000111 122222 333333322122234567778888888999998876665542211   11334


Q ss_pred             EEEecCCCcccccccccccCCCCChHHHHHHHHhcc-CEEEECCcccC----------CCCcEEEEeec--CHHHHHHHH
Q 047983          153 VMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEE-SIIVLPGITVG----------LKDWLRITFAV--EPSAFEIGL  219 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-gi~v~pg~~f~----------~~~~~Rl~~~~--~~~~l~~~~  219 (233)
                      ++         +.++     +.  +.+.+...|.++ ||.+.+|..+.          ..+++|+++..  +.++++.++
T Consensus       307 v~---------~~~~-----~~--~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~  370 (376)
T TIGR01977       307 VS---------FTVE-----GI--DSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLL  370 (376)
T ss_pred             EE---------EEEC-----CC--CHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHH
Confidence            44         2332     22  334455555555 99999987663          24789999986  789999998


Q ss_pred             HHHHH
Q 047983          220 GRMKA  224 (233)
Q Consensus       220 ~~l~~  224 (233)
                      +.|++
T Consensus       371 ~~l~~  375 (376)
T TIGR01977       371 EALSE  375 (376)
T ss_pred             HHHhh
Confidence            88864

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=98.97  E-value=4.8e-08  Score=86.14  Aligned_cols=113  Identities=17%  Similarity=0.212  Sum_probs=67.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceE-EEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~-G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+|++|.......    ++. ... +  +++.|+||.++.+|-++ ||+++++  +++        
T Consensus       169 ~~I~~la~~~gi~livD~t~a~~~~~~----~l~-~~~-D--ivv~S~sK~l~g~~~~~gG~vv~~~--~l~--------  230 (398)
T PRK08249        169 ERLAAAAKKVGALVVVDNTFATPINQN----PLA-LGA-D--LVIHSATKFLSGHADALGGVVCGSK--ELM--------  230 (398)
T ss_pred             HHHHHHHHHcCCEEEEECCcCccccCC----chh-hCC-C--EEeccCceecCCCCCceEEEEECCH--HHH--------
Confidence            368999999999999999999654321    221 222 2  77899999998888877 5555543  333        


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC  140 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  140 (233)
                            .+++..........++.  .+.+. ...-+.+....++..+++..+.+.|++.+.
T Consensus       231 ------~~l~~~~~~~g~~~s~~--~a~l~-l~~l~tL~~R~~~~~~na~~la~~L~~~p~  282 (398)
T PRK08249        231 ------EQVYHYREINGATMDPM--SAYLI-LRGMKTLKLRVRQQQESAMALAKYLQTHPK  282 (398)
T ss_pred             ------HHHHHHHHhcCCCCCHH--HHHHH-HhCcchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence                  33332222221222221  11111 112234455667778888888899987553

>PRK07046 aminotransferase; Validated

Probab=98.96  E-value=1.7e-08  Score=90.27  Aligned_cols=207  Identities=9%  Similarity=-0.018  Sum_probs=98.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh-
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH-   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~-   80 (233)
                      +|.++|++||+++|.||+.. |-.+-........+.++     +-+++|..+ .|+.+|.+++++  ++++   .+... 
T Consensus       243 ~lr~lc~~~g~llI~DEV~t-fr~g~Gg~~~~~gv~PD-----i~t~gK~lg-gG~Pi~av~g~~--~i~~---~~~~~~  310 (453)
T PRK07046        243 ALRELTRRYGTLLVIDETHT-ISSGPGGYTRAHGLEPD-----FLVVGKPIA-GGVPCAVYGFSA--ELAE---RAQAAK  310 (453)
T ss_pred             HHHHHHHHhCCEEEEEcccc-CccCCcchhHHhCCCcc-----ceeehhhhc-CCCcceeeeehH--HHHH---HHhhcc
Confidence            68899999999999999987 43221122222223332     447899955 589999999987  4442   11000 


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEK-TEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                      ............+++.++.+.+++++.+ +. ..++..++..+.-..-++.+.+..++.+.... ....|.++...+.++
T Consensus       311 ~~~~~~~~~~~~T~~gnpl~~aa~~a~L-~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~-v~g~G~~~~i~~~~~  388 (453)
T PRK07046        311 ASAPPGHSGIGTTLSANALAMAAMRATL-AEVMTEAAYAHMLALAARLAAGLRAVIARHGLPWH-VTRVGARVEFQFAPT  388 (453)
T ss_pred             ccCCCCCceeCCCCcccHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEEeCcEEEEEEeCC
Confidence            0000000001112332333322333332 11 11122222222222222233232333321111 233344433311111


Q ss_pred             CcccccccccccCCCC-ChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          160 DKCLLKLNYSLLEGIN-SDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                      .+....-...   ... .-...+...+.++||.+.|..     +.++++...+++++++.++++.+.+++..
T Consensus       389 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~Gv~~~~~~-----~~~~~~p~~t~~did~~~~~~~~~l~~~~  452 (453)
T PRK07046        389 PPRNGAEAAA---ALDPELEAALHLYLLNRGVLITPFH-----NMMLVCPATTAADVDRLVAAFDACLGELL  452 (453)
T ss_pred             CCCCHHHHhc---ccCHHHHHHHHHHHHHCCCEEeccc-----CcEEEeCCCCHHHHHHHHHHHHHHHHHHh
Confidence            1111000000   000 011233344556899998732     46788877799999999999999997653

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=98.95  E-value=3.2e-08  Score=82.10  Aligned_cols=188  Identities=14%  Similarity=0.122  Sum_probs=128.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccc--ccccc-CCccCEEEEccCccccCCCCceEEEEEe--cCCCccccccch
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFV--PMGVF-GSIVPVLTLGSISKRWIVPGWRLGWLVT--SDPNGILQDLGV   76 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~--~~~~~-~~~~~~i~~~s~sK~~~~~G~R~G~~~~--~~~~~~~~~~~~   76 (233)
                      +|+++.++.+...+.|-+|++|.-++...-  .+... .....++++-||+|.||+.|-|+|-+..  .++ +.+     
T Consensus       202 qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGnltvv~~n~-a~i-----  275 (410)
T KOG1412|consen  202 QIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGNLTVVVNNP-AVI-----  275 (410)
T ss_pred             HHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccccceEEEecCh-hHH-----
Confidence            578888899999999999999987653321  11111 2335589999999999999999999543  332 122     


Q ss_pred             hhhhhhhhHHhhhhhhh----h-ccCcchHH-HHHHHHhhhcH-----HHHHHHHHHHHHHHHHHHHHHhhcC--CCccc
Q 047983           77 AFFHSISLNMRMDDYLL----L-SESVYTTV-GAVPQILEKTE-----EEFFSKITDILREAADICCDRLKEI--PCITC  143 (233)
Q Consensus        77 ~~~~~~~~~~~~~~~~~----~-~~~~~~~~-~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~  143 (233)
                               ..+.+.+.    . .++|+... ..++.+|+...     ..-++.+..++++.|..|+..|..+  ||-..
T Consensus       276 ---------~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL~TPGtWD  346 (410)
T KOG1412|consen  276 ---------AGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHLVALKTPGTWD  346 (410)
T ss_pred             ---------HHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH
Confidence                     22222211    1 12333333 77888887652     2344556677777777777777665  23222


Q ss_pred             ccCCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHH
Q 047983          144 PKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRM  222 (233)
Q Consensus       144 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l  222 (233)
                      .+.-+.|+|.+           ..+        ....+..+.+++.|.+.+-+        |++++. ...+++...+.|
T Consensus       347 HI~~QiGMFSy-----------TGL--------tp~qV~~li~~h~vyLl~~G--------RInisGLN~~NveyVAkAI  399 (410)
T KOG1412|consen  347 HITQQIGMFSY-----------TGL--------TPAQVDHLIENHKVYLLSDG--------RINISGLNMKNVEYVAKAI  399 (410)
T ss_pred             HHHhhccceee-----------cCC--------CHHHHHHHHHhceEEEecCC--------cEeeeccccccHHHHHHHH
Confidence            24566799988           654        67788889999999998744        899987 788899999999


Q ss_pred             HHHHHHHhh
Q 047983          223 KAFYYRHAK  231 (233)
Q Consensus       223 ~~~l~~~~~  231 (233)
                      .+.++....
T Consensus       400 de~Vr~~~~  408 (410)
T KOG1412|consen  400 DETVRAIKS  408 (410)
T ss_pred             HHHHHhhcc
Confidence            988887653

>PRK12403 putative aminotransferase; Provisional

Probab=98.95  E-value=5.5e-08  Score=87.30  Aligned_cols=199  Identities=16%  Similarity=0.163  Sum_probs=99.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCc-eEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGW-RLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|.||+.+.|..+|... ....++-.+.++   +++|.++. |. .+|.+++++  ++.+.  +. ..
T Consensus       247 ~lr~lc~~~g~lLI~DEV~tGfGRtG~~~-a~e~~gv~PDiv---~~gK~lgg-G~~Piga~v~~~--~i~~~--~~-~~  316 (460)
T PRK12403        247 EIQRICRQYDVLLCADEVIGGFGRTGEWF-AHEHFGFEPDTL---SIAKGLTS-GYVPMGGLVLSK--RIAEA--LV-EQ  316 (460)
T ss_pred             HHHHHHHHcCCEEEEeccccCCCcCchhh-hhhhcCCCCCeE---EEcccccc-cccceEEEEECH--HHHHH--Hh-cC
Confidence            68999999999999999999886666422 111122222233   58998554 74 999999876  33321  10 00


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHH-HHHHHHH-HHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEE-EFFSKIT-DILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~-~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                          ...+....+++.++...+++++.+ +.-.+ +.+++.+ +.-+.-++.+.+..++.+.+.. .... |.++.    
T Consensus       317 ----~~~~~~~~T~~gnPl~~Aaala~L-~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~-vrG~-Gl~~g----  385 (460)
T PRK12403        317 ----GGVFAHGLTYSGHPVAAAVAIANL-KALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGE-VQGA-GLVAA----  385 (460)
T ss_pred             ----CCccccCCCCCCCHHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEEe-Eeec-ceEEE----
Confidence                000001112222222222334433 21111 2223332 1222222223233233432221 3333 44444    


Q ss_pred             CCccccccccc--ccCCCCC---hHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHHhh
Q 047983          159 EDKCLLKLNYS--LLEGINS---DTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       159 ~~~~~~~~~~~--~~~~~~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~~~  231 (233)
                           +.+...  .......   ....+...+.++||.+.+..     +.+|++..-  ++++++++++.+.+++++..+
T Consensus       386 -----ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~-----~~~~l~Ppl~it~~eid~~~~~l~~al~~~~~  455 (460)
T PRK12403        386 -----LQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRSTL-----GRMIMAPALVAGRAEIDELVDKTRIAVDRTAR  455 (460)
T ss_pred             -----EEEccCccccccccchhHHHHHHHHHHHhCCEEEEecC-----CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                 222110  0000000   11223444567899998632     357776664  899999999999999988753

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=98.95  E-value=3.7e-08  Score=88.37  Aligned_cols=192  Identities=15%  Similarity=0.122  Sum_probs=101.7

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++|++||+++|.||+.+.|..+|... .....+.+  .++   +++|..+. | +.+|.+++++  ++.+   ..  
T Consensus       253 ~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~P--Div---~~gKgl~g-G~~P~~av~~~~--~i~~---~~--  319 (459)
T PRK06082        253 RVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEP--DIL---CIGKGLGG-GLVPIAAMITKD--KYNT---AA--  319 (459)
T ss_pred             HHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCC--CEE---EecccccC-CCCcceEEEEcH--HHHh---hc--
Confidence            68999999999999999999886665321 11122223  233   48999664 5 6999999987  2221   11  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEEE
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~  155 (233)
                            .......+++.++...+++++.+ +.-.+   ....+..+++-+++.+.|++    .+.+.. ....|.+ +. 
T Consensus       320 ------~~~~~~~T~~gnpl~~aaa~a~L-~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vrG~Gl~-~~-  386 (459)
T PRK06082        320 ------QISLGHYTHEKSPLGCAAALATI-EVIEQ---EGLLEKVKADSQFMRERLLEMKAKYPLIGD-VRGIGLL-WG-  386 (459)
T ss_pred             ------cCCCCCCCCCcCHHHHHHHHHHH-HHHHh---cCHHHHHHHHHHHHHHHHHHHHhhCCCeee-eeeccce-eE-
Confidence                  10001122332222222333333 11111   12333344444444444433    332221 3344443 44 


Q ss_pred             ecCCCccccccccc--ccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHHhh
Q 047983          156 CGSEDKCLLKLNYS--LLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       156 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                              +.+...  ......+....+...+.++||.+.|..    .+.+|++..  .++++++++++++.+.+.+..+
T Consensus       387 --------ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~----~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~~~  454 (459)
T PRK06082        387 --------VELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQ----GNVIQLSPPLIITREELTQALAILEEAIAKICQ  454 (459)
T ss_pred             --------EEEccCccccCccHHHHHHHHHHHHhCCCEEEecC----CCEEEEeCCCccCHHHHHHHHHHHHHHHHHHhh
Confidence                    222110  000000112334445558899998731    377888754  4899999999999999987643

>TIGR02006 IscS cysteine desulfurase IscS

Probab=98.94  E-value=8.9e-08  Score=84.49  Aligned_cols=193  Identities=12%  Similarity=0.056  Sum_probs=110.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|+++|+++++|++++.    +..+..+...   .--+++.|..|.++.+|  +|++++++.  ....+... .+
T Consensus       162 ~~I~~l~~~~g~~livD~a~a~----g~~~~~~~~~---~~D~~~~s~~K~~gp~G--~G~l~~~~~--~~~~~~~~-~~  229 (402)
T TIGR02006       162 AAIGEICRERKVFFHVDAAQSV----GKIPINVNEL---KVDLMSISGHKIYGPKG--IGALYVRRK--PRVRLEAL-IH  229 (402)
T ss_pred             HHHHHHHHHcCCEEEEEcchhc----CCcccCcccc---CCCEEEEehhhhcCCCc--eEEEEEccC--CCCCCCce-ec
Confidence            3789999999999999999875    2222222222   22377888889876556  899888863  21110100 00


Q ss_pred             hhhhHHhhhhhhhhccCcch-HH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC--ccEEEEEe
Q 047983           81 SISLNMRMDDYLLLSESVYT-TV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE--GSMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~~~~~~  156 (233)
                      .   ....+   .+..++++ .. .++...++. ..+.++...+++++.++.+.+.|++++++.....+.  ...-+.  
T Consensus       230 g---~~~~~---~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~--  300 (402)
T TIGR02006       230 G---GGHER---GMRSGTLPTHQIVGMGEAFRI-AKEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLN--  300 (402)
T ss_pred             C---CCccC---CccCCCccHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEE--
Confidence            0   00000   11112222 22 444333322 234567778889999999999998876654211111  000011  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-------------------CCcEEEEeec--CHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-------------------KDWLRITFAV--EPSAF  215 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------~~~~Rl~~~~--~~~~l  215 (233)
                             +.++.     + +..+.. ..+  .+|.+..|..+.+                   .+++|+|+..  +++++
T Consensus       301 -------v~f~~-----~-~~~~~~-~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edi  364 (402)
T TIGR02006       301 -------VSFNY-----V-EGESLI-MAL--KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEI  364 (402)
T ss_pred             -------EEEeC-----c-CHHHHH-Hhc--CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHH
Confidence                   11221     1 123332 223  4888888776532                   2689999996  89999


Q ss_pred             HHHHHHHHHHHHHHh
Q 047983          216 EIGLGRMKAFYYRHA  230 (233)
Q Consensus       216 ~~~~~~l~~~l~~~~  230 (233)
                      +.+++.|.+++++.+
T Consensus       365 d~l~~~l~~~~~~~~  379 (402)
T TIGR02006       365 DYAVKLVKSAIDKLR  379 (402)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999887653

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.93  E-value=2.2e-08  Score=89.15  Aligned_cols=198  Identities=14%  Similarity=0.059  Sum_probs=99.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|.||++..| ..+... .....+.++     +-+++|..+ .|+++|.+++++  ++.+.  +.   
T Consensus       225 ~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~PD-----ivt~gK~lg-gG~Pi~av~~~~--~i~~~--~~---  290 (428)
T PRK12389        225 AVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVEPD-----LTALGKIIG-GGLPIGAYGGRK--DIMEQ--VA---  290 (428)
T ss_pred             HHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCCCCC-----eeeechhhc-CCCceeEEeEHH--HHHhh--hc---
Confidence            6899999999999999999988 433211 111222232     348899954 589999999887  34421  10   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEEEe
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~~  156 (233)
                      .   ........+++.++...+++++.+ +.-.++   ...+.++++-+++.+.|++    .+........ +|++...+
T Consensus       291 ~---~~~~~~~~T~~gnpl~~Aaala~L-~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~-~g~~gi~~  362 (428)
T PRK12389        291 P---LGPAYQAGTMAGNPASMAAGIACL-EVLQQE---GVYEKLDRLGAMLEEGILEAAEKHGITITINRL-KGALTVYF  362 (428)
T ss_pred             c---CCCcccccCCccCHHHHHHHHHHH-HHHhcc---cHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEec-CcEEEEEE
Confidence            0   000111122332233322333333 211111   1233334444444444433    3322111122 33433211


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~  228 (233)
                      .+........  .. ....+....+.+.+.++||.+.|..    .+.+.+++..++++++++++.+.+.+++
T Consensus       363 ~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~l~~t~e~id~~~~~l~~~l~~  427 (428)
T PRK12389        363 TDEKVTNYDQ--AE-RSDGEAFGKFFKLMLNQGINLAPSK----YEAWFLTTAHTEEDIEETLEAVDRAFAQ  427 (428)
T ss_pred             eCCCCCChhh--hc-ccCHHHHHHHHHHHHHCCcEeecCC----CCCeeecCCCCHHHHHHHHHHHHHHHHh
Confidence            1110000000  00 0000113455566668899998842    1234577777999999999999998864

>PRK06062 hypothetical protein; Provisional

Probab=98.93  E-value=3.8e-08  Score=88.13  Aligned_cols=203  Identities=17%  Similarity=0.096  Sum_probs=100.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++|++||+++|.||++..|...|... .....+.++     +.+++|.++ .| +++|.+++++  ++.+.  +.  
T Consensus       239 ~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PD-----i~t~gK~lg-gG~~Pigav~~~~--~i~~~--~~--  306 (451)
T PRK06062        239 GVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPD-----LITFAKGVN-SGYVPLGGVAISE--AIAAT--FA--  306 (451)
T ss_pred             HHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCC-----eeeechhhh-cCCcCcEEEEEcH--HHHHH--hc--
Confidence            68899999999999999999975555321 111223332     558899855 47 4999999987  34421  10  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHH--HHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILR--EAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                        .   ..+....+++.++...+++++.+ +.-.++.+.+..+.+.  .-++.|.+..++.+.+.. ....|.++..-+-
T Consensus       307 --~---~~~~~~~T~~gnpl~~Aaa~a~L-~~l~~~~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~-vrG~Gl~~gve~~  379 (451)
T PRK06062        307 --D---RPYPGGLTYSGHPLACAAAVATI-NAMEEEGIVENAARIGAEVLGPGLRELAERHPSVGE-VRGLGVFWALELV  379 (451)
T ss_pred             --c---CCCCCCCCCCCCHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcEEe-EeccccEEEEEEc
Confidence              0   01111123333322222444433 2111111111111221  112222222222332222 3344443332111


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHHh
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~  230 (233)
                      +++...-.++.... + ......+...+.++||.+.+.     .+.+|++..  .++++++++++++.+++++.+
T Consensus       380 ~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~Gvl~~~~-----~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~  447 (451)
T PRK06062        380 ADRETREPLAPYGA-S-SAAMAAVKAACKERGLLPFVN-----GNRIHVVPPCTVTEDEVREGLAILDAALAVAD  447 (451)
T ss_pred             ccccccCCCcccch-h-hHHHHHHHHHHHHCCcEEeec-----CCEEEEECCccCCHHHHHHHHHHHHHHHHHhh
Confidence            11110000000000 0 002345556667889998752     257888664  489999999999999998764

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.93  E-value=4.5e-08  Score=88.01  Aligned_cols=199  Identities=14%  Similarity=0.093  Sum_probs=103.4

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++.++|++||+++|.||+...|..+|.-. .....+-.+.   +-+++|..+ .| +++|.+++++  ++.+.  +. ..
T Consensus       262 ~lr~lc~~~gillI~DEV~TGfGRtG~~~-a~e~~gv~PD---iv~~gKgl~-gG~~Plaav~~~~--ei~~~--~~-~~  331 (472)
T PRK08742        262 RARELCDAHGAFLIADEIATGFGRTGTLF-ACEQAGVMPD---LLCLSKGLT-GGFLPLSAVLATQ--QLYDA--FL-DD  331 (472)
T ss_pred             HHHHHHHHcCCEEEEechhhCCCCCccch-HHHhcCCCCC---EEEEccccc-CCCCCcceeeccH--HHHHH--hh-cc
Confidence            68899999999999999999987766321 1111222222   446699854 47 4999999987  34321  10 00


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                      ..  ...+....+++.++...+++.+.+ +.-.++.+.+..+.+.++...+.+.+++.+.+.. .... |.++-      
T Consensus       332 ~~--~~~~~h~~T~~gnpl~~Aaa~a~L-~~i~~~~l~~~~~~~g~~l~~~~~~~~~~~~i~d-vRG~-Gl~~g------  400 (472)
T PRK08742        332 SR--ERAFLHSHSYTGNPLACAAALATL-DIFADDDVIARNQPTAARMTQLAAQIGEHPHVAD-VRQA-GMVVA------  400 (472)
T ss_pred             Cc--cCccCcCCCCCccHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHhcCCCeee-Eecc-ceEEE------
Confidence            00  000011122322222222333332 2212222223333333333344444544543322 3343 44444      


Q ss_pred             ccccccccccc--CCCCCh---HHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLL--EGINSD---TEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       161 ~~~~~~~~~~~--~~~~~~---~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                         +.+.....  .....+   ...+.+.+.++||.+.+.   +  +.+|+...  .+++++++++++|.+.+++.
T Consensus       401 ---iel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~---g--~vi~~~PpL~it~~ei~~~~~~l~~~l~~~  468 (472)
T PRK08742        401 ---FELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPL---G--DVLYWMPPYCVDEAQLALLADTTRHAIDEA  468 (472)
T ss_pred             ---EEeccCccccccCCchhHHHHHHHHHHHHCCeEEEec---C--CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence               22211100  000001   234455566889999873   2  57888665  38999999999999999875

>PRK06234 methionine gamma-lyase; Provisional

Probab=98.93  E-value=2.8e-08  Score=87.65  Aligned_cols=58  Identities=16%  Similarity=0.201  Sum_probs=45.8

Q ss_pred             ChHHHHHHHc--CcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceE-EEEEecC
Q 047983            1 FCIEETTKKL--GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSD   66 (233)
Q Consensus         1 ~~i~~l~~~~--~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~-G~~~~~~   66 (233)
                      ++|.++|+++  |+++|+||+|....+..    ++ ..   ...|++.|+||.++++|+|+ ||+++++
T Consensus       169 ~~I~~la~~~~~~i~livDea~~~~~~~~----~l-~~---g~Divv~S~sK~l~g~g~~~gG~v~~~~  229 (400)
T PRK06234        169 KAISNIAHENNKECLVFVDNTFCTPYIQR----PL-QL---GADVVVHSATKYLNGHGDVIAGFVVGKE  229 (400)
T ss_pred             HHHHHHHHhcCCCCEEEEECCCCchhcCC----ch-hh---CCcEEEeeccccccCCCCceeEEEEecH
Confidence            3789999997  99999999999765431    22 11   33489999999999999876 9999887

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.92  E-value=4.2e-08  Score=87.84  Aligned_cols=195  Identities=12%  Similarity=0.090  Sum_probs=101.2

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|.||+...|..+|.-+ .....+-.+.   +-+++|..+ .| +++|.+++++  ++.+.  +..  
T Consensus       247 ~lr~lc~~~gillI~DEV~TG~GRtG~~f-a~~~~gv~PD---ivt~gKgl~-gG~~Pi~av~~~~--ei~~~--~~~--  315 (453)
T PRK06943        247 GLRALCDRYGVHLIADEIAVGCGRTGTFF-ACEQAGVWPD---FLCLSKGIS-GGYLPLSLVLSRD--AIFAA--FYD--  315 (453)
T ss_pred             HHHHHHHHcCCEEEeechhhCCCCCcchh-HHHhCCCCCC---eEeeehhhc-cCcccceEEEEcH--HHHHh--hcc--
Confidence            68899999999999999999986665321 1111222222   446699855 58 5999999987  44421  100  


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHhh---cCCCcccccCCCccEEEEEe
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEE-EFFSKITDILREAADICCDRLK---EIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~---~~~~~~~~~~~~~g~~~~~~  156 (233)
                       ......+....+++.++...+++++.+ +.-.+ +.+++    .++.-+++.+.|+   +.+.+.. .... |.++-  
T Consensus       316 -~~~~~~~~~~~T~~gnpl~~aaa~a~L-~~i~~~~l~~~----~~~~G~~l~~~L~~l~~~~~v~~-vrG~-Gl~~g--  385 (453)
T PRK06943        316 -DDVTRGFLHSHSYTGNPLACRAALATL-DLFAEDDVLAR----NARKSARLRAALAPLAAHPQVRH-LRQR-GTIFA--  385 (453)
T ss_pred             -cCccCCccCCCCCCCCHHHHHHHHHHH-HHHHhcCHHHH----HHHHHHHHHHHHHHHhcCCCEEe-Eecc-ccEEE--
Confidence             000000111122322222322333333 21111 22222    2222333333332   2333321 2333 44444  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEE--eecCHHHHHHHHHHHHHHHHHHh
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRIT--FAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~--~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                             +.+.... .........+.+.+.++||.+.|..     +.+|++  +..+++++++++++|.+.+++..
T Consensus       386 -------vel~~~~-~~~~~~~~~i~~~~~~~Gll~~~~g-----~~l~~~Ppl~it~~eid~~~~~l~~al~~~~  448 (453)
T PRK06943        386 -------FDVALDG-DAARTFSRRFFEAALERELLLRPIG-----TTVYLMPPYVLDDDEIAWLAERTRATLDATL  448 (453)
T ss_pred             -------EEEccCC-CcchHHHHHHHHHHHHCCcEEEecC-----CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence                   3332110 0000112344555668899997742     458887  55699999999999999998763

>PRK07481 hypothetical protein; Provisional

Probab=98.92  E-value=4.5e-08  Score=87.60  Aligned_cols=196  Identities=14%  Similarity=0.117  Sum_probs=99.2

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++|++||+++|.||+...|..+|... .....+.++     +-+++|..+ .| +++|.+++++  ++.+.  +. .
T Consensus       238 ~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PD-----iv~~gKgl~-gG~~Pi~av~~~~--~i~~~--~~-~  306 (449)
T PRK07481        238 LVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPD-----IMCLAKGIT-SGYVPLGATMVNA--RIADA--FE-A  306 (449)
T ss_pred             HHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCC-----EEEEeeccc-CCCcCceEEEEcH--HHHHH--Hh-c
Confidence            68899999999999999999986665321 112222332     446799844 46 5999999987  34321  10 0


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEEE
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~  155 (233)
                      . ......+.+..+++.++...+++.+.+ +.-.++   ...+..++.-+++.+.|++    .+.+.. .... |.++. 
T Consensus       307 ~-~~~~~~~~h~~T~~gnpl~~aaa~a~L-~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vrG~-Glm~g-  378 (449)
T PRK07481        307 N-ADFGGAIMHGYTYSGHPVACAAALATL-DIVVRE---DLPANAAKRGAYLLEGLQPLKERFELVGD-VRGK-GLMLA-  378 (449)
T ss_pred             c-CccccccccCCCCCCCHHHHHHHHHHH-HHHHhh---hHHHHHHHHHHHHHHHHHHHhhcCCCeEE-Eeec-ceEEE-
Confidence            0 000000111123333333322333332 211111   1222222233333333332    332221 2333 44444 


Q ss_pred             ecCCCcccccccccc--cCCCC---ChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHH
Q 047983          156 CGSEDKCLLKLNYSL--LEGIN---SDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~  228 (233)
                              +.+....  .....   .....+...+.++||.+.|..     +.+|++..  .++++++++++.+.+.+++
T Consensus       379 --------i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g-----~~i~l~Ppl~it~~eid~~~~~l~~~l~~  445 (449)
T PRK07481        379 --------LDLVADKATREPIDPSKGYANAVADVARENGVLVRPSG-----TKIILSPPLVIQREDVDRIVDALDAGLSA  445 (449)
T ss_pred             --------EEecccccccCCCCchhHHHHHHHHHHHhCCeEEEecC-----CEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence                    2221110  00000   112344555667899998742     35788744  4899999999999999976


Q ss_pred             H
Q 047983          229 H  229 (233)
Q Consensus       229 ~  229 (233)
                      .
T Consensus       446 ~  446 (449)
T PRK07481        446 V  446 (449)
T ss_pred             c
Confidence            5

>PRK07483 hypothetical protein; Provisional

Probab=98.92  E-value=5.6e-08  Score=86.86  Aligned_cols=202  Identities=15%  Similarity=0.133  Sum_probs=101.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCc-eEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGW-RLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~-R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++|++||+++|.||+...|..+|.-. .....+.++     +-+++|.. ..|+ ++|.+++++  ++.+.  +.  
T Consensus       225 ~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PD-----iv~~gK~l-~gG~~Pi~av~~~~--~i~~~--~~--  292 (443)
T PRK07483        225 RIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPD-----LVTIAKGL-GAGYQPIGAVLASD--RIYDA--IA--  292 (443)
T ss_pred             HHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCC-----eeeehhhh-ccCccccEEEEEcH--HHHHH--Hh--
Confidence            68899999999999999999986665321 111122232     44679984 4585 999999987  34321  10  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEE-EFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                        .+ ...+.+..+++.++...+++++.+ +.-.+ +..++.++.=..-++.|.+.+++.+.+.. ....|.++ -    
T Consensus       293 --~~-~~~~~h~~T~~gnpl~~aaa~a~l-~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vRG~Glm~-g----  362 (443)
T PRK07483        293 --DG-SGFFQHGHTYLGHATACAAALAVQ-RVIAEDGLLANVRARGEQLRARLRERLGQHPHVGD-IRGRGLFV-G----  362 (443)
T ss_pred             --cC-CCccccCCCCCCCHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCeee-EeecccEE-E----
Confidence              00 000011122332233322333332 21111 22222222222222222222333432222 33444333 3    


Q ss_pred             CCcccccccccc--cCCCC---ChHHHHHHHHhccCEEEECCcc-c-CC-CCcEEEEee--cCHHHHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSL--LEGIN---SDTEFALKLAKEESIIVLPGIT-V-GL-KDWLRITFA--VEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       159 ~~~~~~~~~~~~--~~~~~---~~~~~~~~ll~~~gi~v~pg~~-f-~~-~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~  228 (233)
                           +.+..+.  .....   .....+.+.+.++||.+.|... . +. .+.+|+.-.  .+++++++++++|.+.+.+
T Consensus       363 -----ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~  437 (443)
T PRK07483        363 -----VELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDA  437 (443)
T ss_pred             -----EEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                 2221100  00000   1124455566688999987421 1 11 367888554  4999999999999999987


Q ss_pred             Hh
Q 047983          229 HA  230 (233)
Q Consensus       229 ~~  230 (233)
                      ..
T Consensus       438 ~~  439 (443)
T PRK07483        438 AL  439 (443)
T ss_pred             HH
Confidence            54

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.92  E-value=5e-08  Score=86.65  Aligned_cols=189  Identities=13%  Similarity=0.080  Sum_probs=98.2

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|.||++..+..+|.-. .....+-.+.++   +++|.++ .| ..+|.+++++  ++.+.  +.   
T Consensus       226 ~lr~lc~~~g~llI~DEv~tG~GrtG~~~-a~~~~gv~PDi~---t~gK~l~-gG~~p~~av~~~~--~i~~~--~~---  293 (422)
T PRK05630        226 GVRTLCDKHDILLIADEIATGFGRTGELF-ATLAAGVTPDIM---CVGKALT-GGFMSFAATLCTD--KVAQL--IS---  293 (422)
T ss_pred             HHHHHHHHcCCEEEEecceeCCCcCchhh-HHHhcCCCCCee---eeechhh-cCccccceeeccH--HHHHH--Hh---
Confidence            68899999999999999999885555321 111112212223   8899753 36 5889999987  33321  10   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc---CCCcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE---IPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~~~~~~~~~~~~g~~~~~~~  157 (233)
                      .......+....+++.++...+++.+.+ +.-.++   ..++.++++-+++.+.|+.   .+.+.. .... |.++-   
T Consensus       294 ~~~~~~~~~h~~T~~g~Pla~aaa~aaL-~~l~~~---~~~~~~~~~g~~l~~~L~~l~~~~~v~~-vRg~-Gl~~~---  364 (422)
T PRK05630        294 TPNGGGALMHGPTFMANPLACAVAHASL-EIIETG---MWRKQVKRIEAELIAGLSPLAHLPGVAD-VRVL-GAIGV---  364 (422)
T ss_pred             ccCCCCccccCCCCcCCHHHHHHHHHHH-HHHHhC---cHHHHHHHHHHHHHHHHHHhhcCCCeee-eecc-ccEEE---
Confidence            0000000111122322222222333332 111111   1223333444444444433   222211 2222 44444   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~  228 (233)
                            +.+..+      .+...+...+.++||.+.+.   +  +.+|+...  .+++++++++++|.++++.
T Consensus       365 ------ie~~~~------~~~~~~~~~~~~~Gl~~~~~---g--~~l~~~PpL~it~~~i~~~~~~l~~al~~  420 (422)
T PRK05630        365 ------VEMEQP------VDMEEATQAAVDHGVWLRPF---G--RLVYVMPPYITTSEQIAQICAALAAAVKA  420 (422)
T ss_pred             ------EEECCc------ccHHHHHHHHHHCCeEEEec---C--CEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence                  333211      12345555666889999763   2  57787655  4899999999999998864

>PRK07482 hypothetical protein; Provisional

Probab=98.91  E-value=7e-08  Score=86.63  Aligned_cols=201  Identities=15%  Similarity=0.093  Sum_probs=100.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCc-eEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGW-RLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|.||+...|..+|..+ .....+-.+.   +-+++|..+ .|. ++|.+++++  ++.+.+..-  
T Consensus       244 ~~lr~lc~~~giLlI~DEV~tGfGRtG~~~-a~~~~gv~PD---iv~~gKgl~-gG~~Pi~av~~~~--~i~~~~~~~--  314 (461)
T PRK07482        244 PAIQAVLKKYDILLIADEVVTGFGRLGSMF-GSDHYGIEPD---LITVAKGLT-SAYAPLSGSIVGE--KVWDVLEQG--  314 (461)
T ss_pred             HHHHHHHHHhCCEEEEeccccCCCcCcchh-hHHhcCCCCC---EEEEccccc-cCccccceeeecH--HHHHHHhcc--
Confidence            368999999999999999999997666422 1111222222   335799844 464 899999887  333210000  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHh----hcCCCcccccCCCccEEEEE
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRL----KEIPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~~~~~~~~g~~~~~  155 (233)
                        ......+....+++.++.+.+++++.+ +.-.++   ...+..++.-+++.+.|    ++.+.+.. .... |.++. 
T Consensus       315 --~~~~~~~~h~~T~~gnpl~~Aaa~a~L-~~~~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~-vrG~-Glm~g-  385 (461)
T PRK07482        315 --SDEHGAIGHGWTYSGHPICAAAALANL-DILERE---NLVGNAAEVGAYFRARLRAAFGDHPLVGE-VRGV-GMLAA-  385 (461)
T ss_pred             --cccCCccccCCCCCcCHHHHHHHHHHH-HHHHhC---CHHHHHHHHHHHHHHHHHHHHhcCCCEEE-Eeec-eeEEE-
Confidence              000000111122333333322334433 111111   12222233333333333    33433221 2333 44444 


Q ss_pred             ecCCCcccccccccc--cCCCCCh---HHHHHHHHhccCEEEECCcccCCCCcEEEE--eecCHHHHHHHHHHHHHHHHH
Q 047983          156 CGSEDKCLLKLNYSL--LEGINSD---TEFALKLAKEESIIVLPGITVGLKDWLRIT--FAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~--~~~~~~~l~~~~~~l~~~l~~  228 (233)
                              +.+....  ..+...+   ...+...+.++||.+.++.   ..+.+|+.  +..++++++++++.+.+.+++
T Consensus       386 --------iel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~---~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~  454 (461)
T PRK07482        386 --------VEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMP---HGDILGFAPPLVLTRAEADEIVAIAKDAVDE  454 (461)
T ss_pred             --------EEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                    2231100  0000001   2344555668899986532   12568875  445999999999999999987


Q ss_pred             Hh
Q 047983          229 HA  230 (233)
Q Consensus       229 ~~  230 (233)
                      ..
T Consensus       455 ~~  456 (461)
T PRK07482        455 VL  456 (461)
T ss_pred             HH
Confidence            53

>PRK06148 hypothetical protein; Provisional

Probab=98.91  E-value=2.9e-08  Score=96.71  Aligned_cols=195  Identities=15%  Similarity=0.124  Sum_probs=103.2

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      ++.++|++||+++|.||+...|...|.........+-   .--|-+++|..+ .|+++|.+++++  ++.+.  +.    
T Consensus       809 ~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv---~PDivt~gK~lg-gG~Plgav~~~~--ei~~~--~~----  876 (1013)
T PRK06148        809 EVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGV---VPDIVTMGKPIG-NGHPMGAVVTTR--EIADS--FD----  876 (1013)
T ss_pred             HHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCC---Ccceeeeccccc-CCcceEEEEEcH--HHHhh--cc----
Confidence            6889999999999999999998666642211211121   122567899954 589999999987  34321  11    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEEEec
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~~~  157 (233)
                          .......+++.++.+.+++++.+ +.-.++   ...+..++.-+++.+.|++    .+.+.. +... |.++-   
T Consensus       877 ----~g~~~~~Tf~gnpla~aaa~a~L-~~i~~e---~l~~~~~~~G~~l~~~L~~l~~~~~~i~~-VrG~-Gl~~g---  943 (1013)
T PRK06148        877 ----NGMEYFNTFGGNPVSCAIGLAVL-DIIEDE---DLQRNALEIGNYLLAGLRELQDRFDIIGD-VRGM-GLFLG---  943 (1013)
T ss_pred             ----CCCccccCCCCCHHHHHHHHHHH-HHHhhc---cHHHHHHHHHHHHHHHHHHHHHhCCCceE-Eeee-ceEEE---
Confidence                11111123333333322333332 211111   1222223333333333322    332221 2333 44444   


Q ss_pred             CCCcccccccccc--cCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSL--LEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       158 ~~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                            +.+....  .....+....+...+.++||.+.+....  .+.+|+...  .++++++++++.|.+++++.
T Consensus       944 ------vel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~--~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148        944 ------IELVTDRKTKAPATAIARYVKNGARERGILIGTEGPH--DNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred             ------EEecCCccccCccHHHHHHHHHHHHhCCeEEeccCCC--CCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence                  2221110  0000012344555566789999874322  367777555  59999999999999999764

>PRK06149 hypothetical protein; Provisional

Probab=98.91  E-value=6.9e-08  Score=93.89  Aligned_cols=190  Identities=18%  Similarity=0.165  Sum_probs=101.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++|++||+++|.||+...|...|.....+...+-...   +-+++|..+ .|+.+|.+++++  ++.+         
T Consensus       769 ~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PD---ivt~gK~lg-~G~Pl~av~~~~--~i~~---------  833 (972)
T PRK06149        769 QVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPD---IITMAKGMG-NGHPLGAVITRR--EIAE---------  833 (972)
T ss_pred             HHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCC---EEEeccccc-CCeeeEEEEEcH--HHHh---------
Confidence            6889999999999999999988666542222221222222   338899955 589999999987  3432         


Q ss_pred             hhhHHhhhh--hhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEE
Q 047983           82 ISLNMRMDD--YLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFV  153 (233)
Q Consensus        82 ~~~~~~~~~--~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~  153 (233)
                           .+..  ....+.+.++..  ++++.+ +.-.++   .+.+..++.-+++.+.|++    .+.+.. .... |.++
T Consensus       834 -----~~~~~~~~~sT~~gnP~~~aaala~L-~~i~~e---~l~~~~~~~G~~l~~~L~~l~~~~~~i~~-vrG~-Gl~~  902 (972)
T PRK06149        834 -----ALEAEGYFFSSTGGSPVSCRIGMAVL-DVLREE---KLQENARRVGDHLKARLEALADRHPLIGA-VHGM-GLYL  902 (972)
T ss_pred             -----hhccCCcccCCCCCCHHHHHHHHHHH-HHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeEE-Eeec-ceEE
Confidence                 2211  111122333333  334433 211111   1222222222333333322    332222 3333 4444


Q ss_pred             EEecCCCcccccccc--cccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHH
Q 047983          154 MYCGSEDKCLLKLNY--SLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~  228 (233)
                      -         +.+..  ....+.......+...+.++||.+.|....  .+.+|+...  .+++++++++++|.+++.+
T Consensus       903 g---------vel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~~--~~vl~~~Ppl~it~~~id~~~~~l~~~l~~  970 (972)
T PRK06149        903 G---------VELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDH--LNILKIKPPLCLDRESADFFVDMLDRVLTE  970 (972)
T ss_pred             E---------EEEecCcccCCCChHHHHHHHHHHHhCCeEEeecCCC--CCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence            4         33210  000000012334555566789999874221  367887555  5999999999999999865

>PRK06917 hypothetical protein; Provisional

Probab=98.90  E-value=6.6e-08  Score=86.49  Aligned_cols=205  Identities=17%  Similarity=0.160  Sum_probs=103.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCc-eEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGW-RLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~-R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++|++||+++|.||+...|..+|... .....+.++     +.+++|..+ .|+ ++|.+++++  ++.+.  +.. 
T Consensus       225 ~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PD-----i~~~gK~l~-~G~~Pi~a~~~~~--~i~~~--~~~-  293 (447)
T PRK06917        225 VIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPD-----IMTLGKGLG-AGYTPIAATVVSD--RVMEP--ILR-  293 (447)
T ss_pred             HHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCC-----EEEeeehhc-cCCcceEEEEEcH--HHHHH--Hhc-
Confidence            68899999999999999999875555321 111222332     457899854 575 999999987  34421  100 


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEEE
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~  155 (233)
                      .    ...+....+++.++...+++++.+ +.-.++   ...+.++++-+.+.+.|++    .+.+.. ....| .++.+
T Consensus       294 ~----~~~~~~~~T~~gnpl~~aaa~a~l-~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vrG~G-l~~~i  363 (447)
T PRK06917        294 G----SRSIMSGHTLSANPLSAATALAVL-EYMEKH---NLPEKAAEKGEYLIKGLQKVQQQSTIIGD-VRGKG-LLIGV  363 (447)
T ss_pred             c----CcccccccCCCCCHHHHHHHHHHH-HHHHHC---CHHHHHHHHHHHHHHHHHHHHhcCCCEEE-Eeecc-eEEEE
Confidence            0    000011112332333322333333 111111   1223333333333333333    332221 23333 44441


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcc-c-CC-CCcEEEEee--cCHHHHHHHHHHHHHHHHHHh
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGIT-V-GL-KDWLRITFA--VEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~-f-~~-~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~  230 (233)
                      -+.+|+.+ +-+..   ....-...+...+.++||.+.|... . +. .+.+|++..  .++++++++++++.+++++..
T Consensus       364 e~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~  439 (447)
T PRK06917        364 EFVADKKT-KQPFS---KSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEMM  439 (447)
T ss_pred             EEeccCCc-CCCCc---chhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHHH
Confidence            11111000 00000   0001134455556688999987421 1 11 367888755  699999999999999998764


Q ss_pred             h
Q 047983          231 K  231 (233)
Q Consensus       231 ~  231 (233)
                      +
T Consensus       440 ~  440 (447)
T PRK06917        440 Q  440 (447)
T ss_pred             H
Confidence            3

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.90  E-value=9.3e-08  Score=85.89  Aligned_cols=203  Identities=10%  Similarity=0.030  Sum_probs=100.4

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      ++.++|++||+++|.||+...|..+|.-. ....++-.+.   +-+++|..+ .|+++|.+++++  .+ +.  +     
T Consensus       256 ~lr~lc~~~giLlI~DEV~tGfGRtG~~~-a~e~~gv~PD---iv~~gKglg-gG~PlsAv~~~~--~~-~~--~-----  320 (464)
T PRK06938        256 GLRRITEEAGIPLIVDEIQSGFGRTGKMF-AFEHAGIIPD---VVVLSKAIG-GSLPLAVVVYRE--WL-DT--W-----  320 (464)
T ss_pred             HHHHHHHHcCCEEEEeccccCCCcCcHHH-HHHhcCCCCC---EEEeecccc-CCCceEEEeehh--Hh-hc--c-----
Confidence            68899999999999999999986665311 1111222222   446799865 589999999986  22 21  1     


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHh-hcCCCcccccCCCccEEEEEecCCC
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRL-KEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                          .......+++.++...+++++.+ +.-.++.+.+..+.+.++.....+.| ++.+.+.. .... |.++.+-+..+
T Consensus       321 ----~~~~~~~T~~gnpla~Aaa~a~L-~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~-VrG~-Glm~gie~~~~  393 (464)
T PRK06938        321 ----QPGAHAGTFRGNQMAMAAGSATL-RYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLGD-VRGR-GLMLGVEIVDP  393 (464)
T ss_pred             ----CCCCCCCCCCcCHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeee-eecc-ceEEEEEeccC
Confidence                11111223333333322333333 21112111122222222221111222 22433222 3333 44444111111


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEE--eecCHHHHHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRIT--FAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~--~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                      ..+.... ...+...+-...+...+.++||.+.++..++  +.+|+.  +..++++++++++++.+.+.+.
T Consensus       394 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~~--~~l~~~Ppl~it~~eid~~~~~l~~~l~~~  461 (464)
T PRK06938        394 QGEPDAL-GHPPANGELASLIQRECLRRGLILELGGRHG--SVVRFLPPLIITAEQIDEVAEIFAEAVAAA  461 (464)
T ss_pred             ccccccc-ccCCccHHHHHHHHHHHHHCCeEEeecCCCC--CEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence            0000000 0000000112344455567899998754333  678885  4459999999999999999764

>PRK05965 hypothetical protein; Provisional

Probab=98.90  E-value=8.2e-08  Score=86.17  Aligned_cols=198  Identities=15%  Similarity=0.132  Sum_probs=101.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|.||+...|..+|.-. .....+-.+.   +-+++|..+ .| +++|.+++++  ++.+.  +.. .
T Consensus       240 ~lr~lc~~~gillI~DEV~tGfGRtG~~~-a~~~~gv~PD---iv~~gKgl~-gG~~Pi~av~~~~--~i~~~--~~~-~  309 (459)
T PRK05965        240 AMREACRELGILFVADEVITGFGRTGPLF-ACEAEGVVPD---LMTVAKGLT-SGYVPMGAVLMSD--HVYQG--IAD-G  309 (459)
T ss_pred             HHHHHHHHcCCEEEEechhccCccCchhh-hHhhcCCCCC---eEEechhhc-cCCcceeEEEEcH--HHHHH--Hhc-c
Confidence            68999999999999999999997666321 1111222222   447799854 48 5999999987  34321  100 0


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc---CCCcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE---IPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~~~~~~~~~~~~g~~~~~~~  157 (233)
                       ......+....+++.++...+++++.+ +.-.++   ...+..++.-+.+.+.|++   .+.+.. .... |.++-   
T Consensus       310 -~~~~~~~~h~~T~~gnpl~~Aaa~a~L-~~l~~~---~l~~~~~~~g~~l~~~l~~l~~~~~v~~-vrG~-Gl~~g---  379 (459)
T PRK05965        310 -AGAAAPVGHGYTYSAHPVSAAVGLEVL-RLYHEG---GLLANGQKAGPRFAAGLDALRAHPLVGD-VRGR-GLLGA---  379 (459)
T ss_pred             -ccccccccccCCCCCCHHHHHHHHHHH-HHHHhc---cHHHHHHHHHHHHHHHHHhhccCCCEEE-Eeec-ceEEE---
Confidence             000000111122332232222333333 111111   1222223333333333333   332221 2333 44444   


Q ss_pred             CCCcccccccccc--cCCCC---ChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSL--LEGIN---SDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       158 ~~~~~~~~~~~~~--~~~~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                            +.+....  ..+..   .-...+...+.++||.+.+..    .+.+|++..  .++++++++++++.+.+++.
T Consensus       380 ------ie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~g----~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~  448 (459)
T PRK05965        380 ------LELVADKATKTPFDAALDPADRIFDRAYANGLVFRAFG----DGVLGFAPALCCTEGEFDLIFERTRKTLDDV  448 (459)
T ss_pred             ------EEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEecC----CcEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence                  2221110  00000   113445556678899997632    366888644  58999999999999999765

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=98.89  E-value=7.4e-08  Score=86.67  Aligned_cols=194  Identities=13%  Similarity=0.061  Sum_probs=114.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCc-cccccccCCccCEEEEccCcccc-CCCCceEEEEEecCCCcccccc-----
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTH-FVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDL-----   74 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~-~~~G~R~G~~~~~~~~~~~~~~-----   74 (233)
                      +|.++|+++|+++++|+++.--...... +.++.   .  --++++|++|++ |..|   |++.+++  ...+..     
T Consensus       202 ~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~---~--~Div~~t~hK~L~GP~G---g~I~~~~--~~~~~~~~g~~  271 (475)
T PLN03226        202 RMRKIADKVGALLMCDMAHISGLVAAQEAASPFE---Y--CDVVTTTTHKSLRGPRG---GMIFFRK--GPKPPKGQGEG  271 (475)
T ss_pred             HHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCC---C--CeEEEecCcccccCCCc---eEEEEch--hhcccccCCCc
Confidence            6889999999999999999864443322 22221   1  227899999987 5566   8988876  222100     


Q ss_pred             ---chhhhhhhhhHHhhhhh--hhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC
Q 047983           75 ---GVAFFHSISLNMRMDDY--LLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE  148 (233)
Q Consensus        75 ---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  148 (233)
                         .+.        ..+...  ..+..+++... ++++..++.-.....++.++.+.++.+.+.+.|++. ++..+....
T Consensus       272 ~~~d~~--------~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~-G~~l~~~~t  342 (475)
T PLN03226        272 AVYDYE--------DKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSK-GYKLVTGGT  342 (475)
T ss_pred             cHHHHH--------HHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCC
Confidence               010        111111  11222222222 444443322222234667899999999999999885 554322212


Q ss_pred             ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-----CCcEEEE------eecCHHHHHH
Q 047983          149 GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-----KDWLRIT------FAVEPSAFEI  217 (233)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----~~~~Rl~------~~~~~~~l~~  217 (233)
                      .....+           +++... ++  +...+.+.|.+.||.+..+...+.     ...+|+.      .+.+++++++
T Consensus       343 ~~hi~l-----------v~~~~~-gi--~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~  408 (475)
T PLN03226        343 DNHLVL-----------WDLRPL-GL--TGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEK  408 (475)
T ss_pred             CCCEEE-----------EEccCC-CC--CHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHH
Confidence            234444           333211 22  556677888899999986542221     3568873      2337888999


Q ss_pred             HHHHHHHHHHH
Q 047983          218 GLGRMKAFYYR  228 (233)
Q Consensus       218 ~~~~l~~~l~~  228 (233)
                      +.+.|.++++.
T Consensus       409 ia~~i~~~~~~  419 (475)
T PLN03226        409 VAEFLHRAVTI  419 (475)
T ss_pred             HHHHHHHHHHH
Confidence            99999888874

>PRK07036 hypothetical protein; Provisional

Probab=98.89  E-value=1.1e-07  Score=85.42  Aligned_cols=197  Identities=15%  Similarity=0.131  Sum_probs=100.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc--ccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF--VPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~--~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      +|.++|++||+++|.||+...|..+|.-.  .....+.++     +-+++|.++ .| +++|.+++++  ++.+.  +..
T Consensus       245 ~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PD-----ivt~gK~l~-gG~~Pi~av~~~~--~i~~~--~~~  314 (466)
T PRK07036        245 RMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPD-----IITFAKGLT-SGYQPLGAVIISE--RLLDV--ISG  314 (466)
T ss_pred             HHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCC-----EEEEccccc-cCccccEEEEEcH--HHHHH--Hhc
Confidence            68999999999999999999986655311  112223332     447899854 47 5999999987  44421  100


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHh---hcCCCcccccCCCccEEEEE
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRL---KEIPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L---~~~~~~~~~~~~~~g~~~~~  155 (233)
                      ....  ...+.+..+++.++...+++++.+ +.-.+   .+..+..++.-+++.+.|   ++.+.+.. .... |.++. 
T Consensus       315 ~~~~--~~~~~~~~T~~gnpl~~aaa~a~L-e~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~v~~-vrG~-Gl~~~-  385 (466)
T PRK07036        315 PNAK--GNVFTHGFTYSGHPVACAAALKNI-EIMER---EGLCEHVREVGPYFEERLASLRELPLVGD-VRGD-HLMAC-  385 (466)
T ss_pred             ccCc--CcccccCCCCCCCHHHHHHHHHHH-HHHHh---CCHHHHHHHHHHHHHHHHHHhccCCCEEE-EEee-ceEEE-
Confidence            0000  000111112332223222333332 11111   112223333333333333   33332221 2333 44444 


Q ss_pred             ecCCCcccccccccc--cCCCCC---hHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHH
Q 047983          156 CGSEDKCLLKLNYSL--LEGINS---DTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~  228 (233)
                              +.+....  ......   -...+...+.++||.+.|..     +.+|++..  .++++++++++++.+++++
T Consensus       386 --------ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~-----~~~~l~Ppl~it~~~id~~~~~l~~al~~  452 (466)
T PRK07036        386 --------VECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPLE-----HLCVLSPPLIITRAQIDEIVAILRAAIEE  452 (466)
T ss_pred             --------EEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeecC-----CEEEEeCCCcCCHHHHHHHHHHHHHHHHH
Confidence                    2221110  000001   12345555668899998742     45777744  4899999999999998877


Q ss_pred             Hh
Q 047983          229 HA  230 (233)
Q Consensus       229 ~~  230 (233)
                      ..
T Consensus       453 ~~  454 (466)
T PRK07036        453 TA  454 (466)
T ss_pred             HH
Confidence            63

>PRK14012 cysteine desulfurase; Provisional

Probab=98.89  E-value=1.5e-07  Score=83.01  Aligned_cols=190  Identities=13%  Similarity=0.087  Sum_probs=105.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|+++|+++|+|++++.    +..+..+...+.   -+++.|+.|.++ |+ ++|++++++.  ...  .+... 
T Consensus       164 ~~I~~la~~~g~~vivD~a~~~----g~~~~~~~~~~~---D~~~~s~~K~~g-p~-g~G~l~~~~~--~~~--~~~~~-  229 (404)
T PRK14012        164 AAIGEICRERGIIFHVDAAQSV----GKVPIDLSKLKV---DLMSFSAHKIYG-PK-GIGALYVRRK--PRV--RLEAQ-  229 (404)
T ss_pred             HHHHHHHHHcCCEEEEEcchhc----CCcccCcccCCC---CEEEEehhhccC-CC-ceEEEEEecC--CCC--CCCce-
Confidence            4789999999999999999975    222222322222   266779999754 44 6999988873  111  11100 


Q ss_pred             hhhhHHhhhhhhhhccCc-chH-HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-C---CccEEEE
Q 047983           81 SISLNMRMDDYLLLSESV-YTT-VGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKK-P---EGSMFVM  154 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~---~~g~~~~  154 (233)
                      ..+. ....   .+..++ +.. ..++.+.+.. .+.......++.++.++++.+.|++++++..+.. +   ...+++|
T Consensus       230 ~~g~-~~~~---~~~~gt~~~~~~~~l~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~  304 (404)
T PRK14012        230 MHGG-GHER---GMRSGTLPTHQIVGMGEAARI-AKEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVS  304 (404)
T ss_pred             ecCC-CccC---CccCCCcCHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEE
Confidence            0000 0000   011111 111 1222222211 1234455677888888888888877665442111 1   1233445


Q ss_pred             EecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-------------------CCcEEEEeec--CHH
Q 047983          155 YCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-------------------KDWLRITFAV--EPS  213 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------~~~~Rl~~~~--~~~  213 (233)
                                 +...      +..+ +...|  .++.|.+|..|.+                   .+.+|+++..  +++
T Consensus       305 -----------~~~~------~~~~-~~~~l--~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~  364 (404)
T PRK14012        305 -----------FNYV------EGES-LIMAL--KDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEE  364 (404)
T ss_pred             -----------EeCc------CHHH-HHHhC--CCeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHH
Confidence                       3221      1222 33334  3777777755532                   2679999996  899


Q ss_pred             HHHHHHHHHHHHHHHH
Q 047983          214 AFEIGLGRMKAFYYRH  229 (233)
Q Consensus       214 ~l~~~~~~l~~~l~~~  229 (233)
                      +++.+++.|+++++.+
T Consensus       365 dvd~~~~~l~~~~~~~  380 (404)
T PRK14012        365 EIDYAIELVRKSIGKL  380 (404)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988765

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.88  E-value=1.1e-07  Score=85.34  Aligned_cols=196  Identities=13%  Similarity=0.098  Sum_probs=99.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++|++||+++|.||+...|..+|.-. .....+.+  .   +-+++|..+ .| +++|.+++++  ++.+.  +.  
T Consensus       240 ~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~P--D---iv~~gKgl~-gG~~Pi~av~~~~--ei~~~--~~--  307 (466)
T PRK07030        240 LLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRP--D---FLCLSKALT-GGYLPLAAVLTTD--TVYQA--FY--  307 (466)
T ss_pred             HHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCC--C---EEeeehhcc-CCcccceEEEecH--HHHHH--Hh--
Confidence            68999999999999999999987666321 11122223  2   446699855 58 5999999987  34321  10  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHh---hcCCCcccccCCCccEEEEEe
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRL---KEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L---~~~~~~~~~~~~~~g~~~~~~  156 (233)
                      ........+.+..+++.++...+++.+. ++.-.++   +..+..++.-+++.+.|   .+.+.+.. .... |.++-  
T Consensus       308 ~~~~~~~~~~h~~T~~gnpla~aaa~a~-L~~i~~~---~l~~~~~~~G~~l~~~L~~l~~~~~v~~-vrG~-Gl~~g--  379 (466)
T PRK07030        308 DDYPTLRAFLHSHSYTGNPLACAAALAT-LDIFEQD---NVIENNRALARRMAEATAHLADHPHVAE-VRQT-GMILA--  379 (466)
T ss_pred             cccccccccccCCCCCCCHHHHHHHHHH-HHHHHhc---CHHHHHHHHHHHHHHHHHHHhcCCCEEE-eEec-eeEEE--
Confidence            0000000011122233222222233333 2211111   12222222233333333   23333221 2333 44444  


Q ss_pred             cCCCccccccccccc--CCC-CC--hHHHHHHHHhccCEEEECCcccCCCCcEEEE--eecCHHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLL--EGI-NS--DTEFALKLAKEESIIVLPGITVGLKDWLRIT--FAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~--~~~-~~--~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~--~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                             +.+.....  .+. .+  ....+...+.++||.+.|..     +.+|+.  +..++++++++++++.+.+++.
T Consensus       380 -------ie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-----~~i~~~Ppl~it~~eid~~~~~l~~al~~~  447 (466)
T PRK07030        380 -------IEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPLG-----SVVYFLPPYVITPEQIDFLAEVASEGIDIA  447 (466)
T ss_pred             -------EEeccCccccccCcchhHHHHHHHHHHHHCCeEEEecC-----CEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence                   22211000  000 00  11344555668899998732     567775  4459999999999999999875

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=98.88  E-value=6.7e-08  Score=85.03  Aligned_cols=112  Identities=16%  Similarity=0.154  Sum_probs=66.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceE-EEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~-G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+|++|.......    ++. ...   -+++.|+||.++++|.++ |++++++  ++++       
T Consensus       164 ~~I~~la~~~gi~livD~a~a~~~~~~----~~~-~g~---Divv~S~sK~lgg~g~~~gG~v~~~~--~li~-------  226 (391)
T TIGR01328       164 ERVCRDAHSQGVKVIVDNTFATPMLTN----PVA-LGV---DVVVHSATKYIGGHGDVVAGLICGKA--ELLQ-------  226 (391)
T ss_pred             HHHHHHHHHcCCEEEEECCCchhccCC----chh-cCC---CEEEccccccccCCCCceEEEEEcCH--HHHH-------
Confidence            478999999999999999998644321    121 122   278899999999999876 5565554  3332       


Q ss_pred             hhhhhHHhhhhh---hhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047983           80 HSISLNMRMDDY---LLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC  140 (233)
Q Consensus        80 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  140 (233)
                             +++..   ...+...++..+++. +  .. -+.+....++..++.+.+.+.|++.|.
T Consensus       227 -------~l~~~~~~~~~g~~l~~~~a~l~-l--~~-L~tl~~r~~~~~~na~~la~~L~~~p~  279 (391)
T TIGR01328       227 -------QIRMVGIKDMTGSVISPFDAWLI-L--RG-LKTLNIRMKRHSENAMKVAEYLKSHPA  279 (391)
T ss_pred             -------HHHHHHHHhCCCCCCCcHHHHHH-H--hC-cCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                   22211   111222222212111 1  11 123344566778888888888877654

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=98.88  E-value=2.9e-08  Score=89.22  Aligned_cols=197  Identities=14%  Similarity=0.058  Sum_probs=99.8

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|.||++..| ..+... .....+.++     +.+++|.++ .|+.+|.+++++  ++++.  +.   
T Consensus       271 ~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv~PD-----i~t~gK~lg-gG~Pigav~g~~--ei~~~--~~---  336 (474)
T PLN02482        271 GLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGITPD-----LTTLGKVIG-GGLPVGAYGGRR--EIMEM--VA---  336 (474)
T ss_pred             HHHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCCCCC-----EEEecchhh-CCCceEEEEEcH--HHHHh--hc---
Confidence            6899999999999999999988 444221 112222232     458899965 689999998877  44421  10   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcC-C--CcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEI-P--CITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~--~~~~~~~~~~g~~~~~~~  157 (233)
                      .   ........+++.++...+++++.+ +.-.+   ....+.++++-+++.+.|+++ .  +........+|++...+.
T Consensus       337 ~---~~~~~~~~T~~gnpl~~aAala~L-~~l~~---~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~gi~f~  409 (474)
T PLN02482        337 P---AGPMYQAGTLSGNPLAMTAGIHTL-KRLQQ---PGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFGFFFT  409 (474)
T ss_pred             c---CCCcccccCcchhHHHHHHHHHHH-HHHhc---cCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccceEEEEEEe
Confidence            0   001111122322333322333332 11111   124444455555555555442 1  111111222444433222


Q ss_pred             CCCcccccccccccCCCCC--hHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINS--DTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~  228 (233)
                      ++.+.    +.... ...+  ....+.+.+.++||.+.|.. +.  .++ +++..+++++++.++.+.+++++
T Consensus       410 ~~~~~----~~~~~-~~~d~~~~~~~~~~l~~~Gv~~~~~~-~~--~~~-psl~ht~~dId~~l~al~~~l~~  473 (474)
T PLN02482        410 EGPVY----NFADA-KKSDTAKFARFHRGMLEEGVYLAPSQ-FE--AGF-TSLAHTEEDIDFTIAAAERVLAR  473 (474)
T ss_pred             cCCcc----Chhhh-ccCCHHHHHHHHHHHHHCCeEEeccC-CC--CCc-CCCCCCHHHHHHHHHHHHHHHHh
Confidence            21110    00000 0001  12334455567899998732 11  122 67777999999999999998864

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.87  E-value=4.3e-08  Score=87.29  Aligned_cols=196  Identities=13%  Similarity=0.036  Sum_probs=97.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|.||++..+ ..|... .....+.+  .+   .+++|.++ .|+.+|++++++  ++++.  +.   
T Consensus       226 ~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv~P--Di---~~~gK~lg-gG~p~~av~~~~--~i~~~--~~---  291 (433)
T PRK00615        226 GIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKP--DI---TVYGKILG-GGLPAAAVVAHK--SIMDH--LA---  291 (433)
T ss_pred             HHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcCCCC--Ce---EEEccccc-CCcceeeeeecH--HHHhh--hc---
Confidence            6899999999999999999887 444211 11112222  22   35899865 468899999987  34321  11   


Q ss_pred             hhhhHHhhhhhhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHh----hcCC-CcccccCCCccEEE
Q 047983           81 SISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRL----KEIP-CITCPKKPEGSMFV  153 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~-~~~~~~~~~~g~~~  153 (233)
                           ..-..+...+.+.++..  ++++.+ +.-.+   ...++.++++-+++.+.|    ++.+ .+.. .. .|.++.
T Consensus       292 -----~~~~~~~~~T~~g~p~~~aa~la~L-~~i~~---~~~~~~~~~~g~~l~~~l~~~~~~~g~~v~~-~r-~G~~~~  360 (433)
T PRK00615        292 -----PEGTIFQAGTLSGNPLAMAAGKASI-NLCRE---QGFYTQLSTLEQNFLSPIEEMIRSQGFPVSL-VR-YGSMFS  360 (433)
T ss_pred             -----CCCCcccCCCCcccHHHHHHHHHHH-HHHhc---ccHHHHHHHHHHHHHHHHHHHHHHcCCCeEE-Ee-eceEEE
Confidence                 00000111122223332  333332 11111   112333333334443333    3321 1221 23 344444


Q ss_pred             EEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHH
Q 047983          154 MYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                      ..+-.....+++-.. .  ....-...+...+.++||.+.|... +  .++ +|...++++++..++.+.++++..
T Consensus       361 i~~~~~~~~~~~~~~-~--~~~~~~~~~~~~l~~~Gv~~~~~~~-~--~~~-ls~~ht~~did~~~~a~~~~~~~~  429 (433)
T PRK00615        361 FFFNENRPNNLAEAQ-L--SDIEAFQTFYQSAFSKGVYLSPSPF-E--ASF-LSSAHSMENLDYAQNVLIDSLEKV  429 (433)
T ss_pred             EEEeCCCCCChHHHh-h--CCHHHHHHHHHHHHHCCeeecCccc-c--ccc-eecCCCHHHHHHHHHHHHHHHHHH
Confidence            322111111111000 0  0001123455556678999987431 1  122 677779999999999999998764

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.86  E-value=3.9e-08  Score=88.22  Aligned_cols=196  Identities=16%  Similarity=0.125  Sum_probs=101.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++|.||+...|..+|.-. .....+-.+.   +-+++|..+ .|+++|.+++++  . ++.  +    
T Consensus       249 ~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~-a~~~~gv~PD---ivt~gK~l~-gG~Pi~av~~~~--~-~~~--~----  314 (459)
T PRK06931        249 QKIREVTQKHGILLIVDEVQAGFARTGKMF-AFEHAGIEPD---IIVMSKAVG-GGLPLAVLGIKK--E-FDA--W----  314 (459)
T ss_pred             HHHHHHHHHcCCEEEEecchhcCCcCchHH-HhhhcCCCCC---EEEeccccc-CCcceeeeeeHH--H-Hhh--c----
Confidence            368899999999999999999986665311 1111222222   457799955 589999988765  2 211  1    


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHH--hhh-cHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQI--LEK-TEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                           .......+++.++...+++++.+  ++. +..++..++-+++++..+   +..++.+.+.. ....|. ++.   
T Consensus       315 -----~~~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~---~l~~~~~~i~~-vrG~Gl-m~g---  381 (459)
T PRK06931        315 -----QPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLA---ELQKRYPCIGN-VRGRGL-MIG---  381 (459)
T ss_pred             -----cCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH---HHHHhCCCeEe-EecCce-EEE---
Confidence                 11112223333333322333333  111 111222223333332222   22223443322 334444 444   


Q ss_pred             CCCccccccccc-c-------cCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYS-L-------LEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       158 ~~~~~~~~~~~~-~-------~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~  227 (233)
                            +.+... .       .+...+-...+...+.++||.+.++...  .+.+|+...  .++++++++++++.+.+.
T Consensus       382 ------iel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~--~~~l~~~Ppl~it~~eid~~~~~l~~~l~  453 (459)
T PRK06931        382 ------IEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRN--GNVVRLLPPLLITQAECEEFIDRFEQALL  453 (459)
T ss_pred             ------EEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCCC--CCEEEEECCCCcCHHHHHHHHHHHHHHHH
Confidence                  222110 0       0000011233445566889999875432  356776555  599999999999999998


Q ss_pred             HHhh
Q 047983          228 RHAK  231 (233)
Q Consensus       228 ~~~~  231 (233)
                      +..+
T Consensus       454 ~~~~  457 (459)
T PRK06931        454 AAVK  457 (459)
T ss_pred             HHHh
Confidence            7654

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=98.85  E-value=1.9e-07  Score=81.90  Aligned_cols=113  Identities=16%  Similarity=0.140  Sum_probs=70.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccC-CCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWI-VPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+|++|.......    ++. +..   .++++|+||.++ .+|++.||++++++ ++.        
T Consensus       156 ~~I~~la~~~g~~vvvD~a~~~~~~~~----pl~-~ga---Divv~S~sK~l~G~~~~~~G~i~~~~~-~~~--------  218 (382)
T TIGR02080       156 AKICHLAKAVGAVVVVDNTFLSPALQN----PLA-LGA---DLVLHSCTKYLNGHSDVIAGAVIAKDP-QVA--------  218 (382)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCC----chh-hCC---CEEEeecceeccCCCCceeEEEEeCCH-HHH--------
Confidence            478999999999999999998654221    221 222   288899999875 58899999988653 232        


Q ss_pred             hhhhhHHhhhhhhhh-ccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047983           80 HSISLNMRMDDYLLL-SESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC  140 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  140 (233)
                            .+++..... +...++..+.   ++ ...-+.+..+.++..++...+.+.|+..|.
T Consensus       219 ------~~l~~~~~~~g~~~sp~~a~---l~-lr~l~tl~~R~~~~~~na~~~a~~L~~~p~  270 (382)
T TIGR02080       219 ------EELAWWANNLGVTGGAFDSY---LT-LRGLRTLVARMRLQQRNAQAIVEYLQTQPL  270 (382)
T ss_pred             ------HHHHHHHHccCCCCCHHHHH---HH-HcccchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                  333322221 2222232111   11 122234555567777888888899887553

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=98.85  E-value=2.7e-07  Score=79.71  Aligned_cols=193  Identities=18%  Similarity=0.097  Sum_probs=124.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +||.++|+++++++.+|-+..-    |.-+..+..+.-+   +...|-.|..|..|  +|.+..++.- -++  .++   
T Consensus       161 ~ei~~i~k~~~i~fHvDAvQa~----Gkipi~~~~~~vD---~ls~SaHK~~GpkG--iGaLyv~~~~-~~~--p~i---  225 (386)
T COG1104         161 AEIGEICKERGILFHVDAVQAV----GKIPIDLEELGVD---LLSFSAHKFGGPKG--IGALYVRPGV-RLE--PLI---  225 (386)
T ss_pred             HHHHHHHHHcCCeEEEehhhhc----CceeccccccCcc---eEEeehhhccCCCc--eEEEEECCCC-ccC--cee---
Confidence            4799999999999999998876    4444444433322   55567779988888  7888876531 111  111   


Q ss_pred             hhhhHHhhhhhhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCC---ccEEEE
Q 047983           81 SISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKE-IPCITCPKKPE---GSMFVM  154 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~---~g~~~~  154 (233)
                           .--.+-....+++....  .+++..++ ...+.++.....+++.++.+.+.|.+ +|+... +...   -..-+.
T Consensus       226 -----~GGgQE~g~RsGTenv~~Ivg~~~A~~-~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~-~g~~~~rlP~~~~  298 (386)
T COG1104         226 -----HGGGQERGLRSGTENVPGIVGFGKAAE-IAVEELEEENARLRKLRDRLEDGLLEIIPDVYL-NGDDEPRLPNILN  298 (386)
T ss_pred             -----ccCcCCCCCCCCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE-cCCcccCCCCeEE
Confidence                 11111112222332222  44444332 23456777788888899999999987 455432 1111   122222


Q ss_pred             EecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-------------------CCcEEEEeec--CHH
Q 047983          155 YCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-------------------KDWLRITFAV--EPS  213 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------~~~~Rl~~~~--~~~  213 (233)
                               +.++     ++  ..+.+...|..+||.+..|+.+..                   .+.+|+||+.  +++
T Consensus       299 ---------~~f~-----gv--~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~e  362 (386)
T COG1104         299 ---------FSFP-----GV--EGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEE  362 (386)
T ss_pred             ---------EEeC-----CC--cHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHH
Confidence                     2233     33  667777889899999999999952                   3789999996  799


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 047983          214 AFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       214 ~l~~~~~~l~~~l~~~~~  231 (233)
                      +++.+++.+.+++++.+.
T Consensus       363 ei~~~~~~l~~~i~~lr~  380 (386)
T COG1104         363 EIDAAAEALKEIIKRLRE  380 (386)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999988753

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=98.85  E-value=1.5e-07  Score=82.72  Aligned_cols=114  Identities=16%  Similarity=0.091  Sum_probs=68.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+|++|.......    ++. ...   -+++.|+||.++.+| .+.||+++++. .+.        
T Consensus       166 ~~I~~la~~~gi~lIvD~a~a~~~~~~----p~~-~ga---Divv~S~sK~l~g~~~~~gG~vv~~~~-~l~--------  228 (388)
T PRK07811        166 AALAELAHDAGAKVVVDNTFASPYLQQ----PLA-LGA---DVVVHSTTKYIGGHSDVVGGALVTNDE-ELD--------  228 (388)
T ss_pred             HHHHHHHHHcCCEEEEECCCCccccCC----chh-hCC---cEEEecCceeecCCCCcEEEEEEECCH-HHH--------
Confidence            478999999999999999998754321    221 222   288999999988754 67899998763 222        


Q ss_pred             hhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           80 HSISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                            .++..... .+...++..+.+..    ..-+.+..+.++..++...+.+.|++.|.+
T Consensus       229 ------~~~~~~~~~~g~~~s~~~a~l~~----~~L~tl~~R~~~~~~na~~la~~L~~~p~v  281 (388)
T PRK07811        229 ------EAFAFLQNGAGAVPGPFDAYLTL----RGLKTLAVRMDRHSENAEAVAEFLAGHPEV  281 (388)
T ss_pred             ------HHHHHHHHhcCCCCCHHHHHHHH----hccCcHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence                  22222211 12222222111111    111234555666788888888888876543

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=98.85  E-value=1.8e-07  Score=81.53  Aligned_cols=188  Identities=20%  Similarity=0.217  Sum_probs=108.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|+++|+++++|-+++-.    .-+..+..++.   -+++.|.-|..|.+|  +|++..++  ..+++++-....
T Consensus       159 ~~I~~~~~~~~~~~~vD~~~~~g----~~~id~~~~~~---D~~~~s~~Kl~gp~G--~g~l~v~~--~~~~~~~p~~~~  227 (371)
T PF00266_consen  159 EEIAKLAHEYGALLVVDAAQSAG----CVPIDLDELGA---DFLVFSSHKLGGPPG--LGFLYVRP--EAIERLRPAKPG  227 (371)
T ss_dssp             HHHHHHHHHTTSEEEEE-TTTTT----TSS--TTTTTE---SEEEEESTSTTSSST--EEEEEEEH--HHHHHHHTSSSS
T ss_pred             ceehhhhhccCCceeEechhccc----ccccccccccc---ceeeecccccCCCCc--hhhheehh--hhhhcccccccc
Confidence            37899999999999999999862    22223333333   288999999656677  69999988  344321100000


Q ss_pred             hhh-hHHhhhhh------hhhccCcchH-H-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC----
Q 047983           81 SIS-LNMRMDDY------LLLSESVYTT-V-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKP----  147 (233)
Q Consensus        81 ~~~-~~~~~~~~------~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----  147 (233)
                      ... ........      ..+..++++. . .++...++.-.+.-+++.+++..+..+++.+.|++++++.. ..|    
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~-~~~~~~~  306 (371)
T PF00266_consen  228 GGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEV-LGPDDEP  306 (371)
T ss_dssp             SSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEE-SSSSCGG
T ss_pred             ccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeE-eeecccc
Confidence            000 00000100      0111122222 2 34443333222344567788889999999999988877654 222    


Q ss_pred             -CccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC--------CCCcEEEEeec--CHHHHH
Q 047983          148 -EGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG--------LKDWLRITFAV--EPSAFE  216 (233)
Q Consensus       148 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--------~~~~~Rl~~~~--~~~~l~  216 (233)
                       .++...+          .+  +   +.  +.+.+.+.|+++||.+..|....        ..+.+|+|+..  +.++++
T Consensus       307 ~~~~i~~~----------~~--~---~~--~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~  369 (371)
T PF00266_consen  307 RRPSIVSF----------NL--P---GS--DADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVD  369 (371)
T ss_dssp             BGTTEEEE----------EE--T---TS--SHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHH
T ss_pred             cccceEEE----------ee--c---CC--CHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHh
Confidence             1233332          23  2   22  56777777888899999976654        25899999996  777776


Q ss_pred             H
Q 047983          217 I  217 (233)
Q Consensus       217 ~  217 (233)
                      +
T Consensus       370 ~  370 (371)
T PF00266_consen  370 R  370 (371)
T ss_dssp             H
T ss_pred             h
Confidence            5

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PRK05968 hypothetical protein; Provisional

Probab=98.84  E-value=1.4e-07  Score=83.05  Aligned_cols=114  Identities=18%  Similarity=0.183  Sum_probs=67.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|+|++|....+..    ++. .+.   -+++.|+||.++.+| .+.|++++++  .++        
T Consensus       167 ~~i~~la~~~gi~vivD~a~a~~~~~~----p~~-~g~---Divv~S~tK~l~g~~~~~gG~i~~~~--~~~--------  228 (389)
T PRK05968        167 AALAALAKRHGVVTMIDNSWASPVFQR----PIT-LGV---DLVIHSASKYLGGHSDTVAGVVAGSK--EHI--------  228 (389)
T ss_pred             HHHHHHHHHcCCEEEEECCCcchhccC----chh-cCC---cEEEeeccccccCCCCeEEEEEEECH--HHH--------
Confidence            368999999999999999998754332    121 222   277889999988755 6889988776  333        


Q ss_pred             hhhhhHHhhhhhh--hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 047983           80 HSISLNMRMDDYL--LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCIT  142 (233)
Q Consensus        80 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  142 (233)
                            .+++...  .++...++..+++. +  ... +.+....++-.++.+.+.+.|++.+.+.
T Consensus       229 ------~~l~~~~~~~~g~~~~~~~A~~~-l--~~L-~tl~~r~~~~~~~a~~la~~L~~~p~v~  283 (389)
T PRK05968        229 ------ARINAEAYPYLGAKLSPFEAWLL-L--RGL-RTLPLRMKAHEASALEIARRLKAHPVVE  283 (389)
T ss_pred             ------HHHHHHHHHhCCCCCChHHHHHH-H--ccc-CcHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence                  2222211  12212222211111 1  111 2334455555666788888888876654

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=98.83  E-value=2.7e-07  Score=81.05  Aligned_cols=113  Identities=14%  Similarity=0.140  Sum_probs=72.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccC-CCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWI-VPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|+++|+++|+|++|......    .++ .... +  +++.|++|.++ .++.+.||+++.++ ++.        
T Consensus       157 ~~I~~ia~~~g~~vivDeay~~~~~~----~pl-~~ga-D--ivv~S~tK~l~G~~d~~~G~vi~~~~-~~~--------  219 (386)
T PRK08045        157 AKICHLAREAGAVSVVDNTFLSPALQ----NPL-ALGA-D--LVLHSCTKYLNGHSDVVAGVVIAKDP-DVV--------  219 (386)
T ss_pred             HHHHHHHHHcCCEEEEECCCCccccC----Cch-hhCC-C--EEEeecceeccCCCCceeEEEEeCcH-HHH--------
Confidence            37899999999999999999875321    122 2223 2  88999999885 57789999988653 233        


Q ss_pred             hhhhhHHhhhhh-hhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047983           80 HSISLNMRMDDY-LLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC  140 (233)
Q Consensus        80 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  140 (233)
                            .++... ..++...++..    +++-...-+.+..+.++..+++..+.+.|++.|.
T Consensus       220 ------~~l~~~~~~~g~~~~p~~----~~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~  271 (386)
T PRK08045        220 ------TELAWWANNIGVTGGAFD----SYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPL  271 (386)
T ss_pred             ------HHHHHHHHhcCCCCCHHH----HHHHHhhhccHHHHHHHHHHHHHHHHHHHHcCCC
Confidence                  222211 12222222221    1111122234777888899999999999988654

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=98.83  E-value=5.2e-08  Score=85.68  Aligned_cols=202  Identities=14%  Similarity=0.041  Sum_probs=105.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +++.++|++||+++|.||+=..|..+|.    +.+.+..+..--+-+++|.....=+++|.+++++  .+.+.  +.   
T Consensus       239 ~~vr~iC~ky~ILlI~DEV~tGFGRTG~----~FA~e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~--~I~~~--~~---  307 (449)
T COG0161         239 KRVREICDKYGILLIADEVATGFGRTGK----MFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSD--RIYEA--FS---  307 (449)
T ss_pred             HHHHHHHHHcCcEEEeecceeCCCcCch----hhhhhhcCCCCCeeeecccccccchhhHhHhhhH--HHHHH--Hh---
Confidence            3689999999999999999999988874    3333332223336688996554445555566655  33321  11   


Q ss_pred             hhhhHHhhhhhhhhccCcchHH--HHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVYTTV--GAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                      +-. ...+.  ...+.+.++.+  ++++.+ +.- .+.++++.++.-..-.+.|.+.+.+.|.+.. +.. -|+..-   
T Consensus       308 ~~~-~~~f~--HG~TYsghPlacAaAla~L-~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~Vgd-VR~-~Gli~~---  378 (449)
T COG0161         308 DGD-AGAFM--HGHTYSGNPLACAAALANL-DILEEEDLLERVAEIGAYLQAGLQAALADHPLVGD-VRG-LGLIGA---  378 (449)
T ss_pred             ccc-CCeec--cCCccccCHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEE-eec-cceEEE---
Confidence            000 01111  22344455554  444433 111 1233333333322223333332333223221 222 244444   


Q ss_pred             CCCccccccccccc--CCC-CChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHhh
Q 047983          158 SEDKCLLKLNYSLL--EGI-NSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       158 ~~~~~~~~~~~~~~--~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                            +++.....  .+. .+-...+.+.+.++|++++|..   ..-++--.+..+++++++.++.+.+.+++...
T Consensus       379 ------iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~g---~~i~~~PPliit~~eid~l~~~l~~al~~~~~  446 (449)
T COG0161         379 ------IELVADKATKTPFEARVGARVRAAALERGLLIRPLG---DVIYLMPPLIITREEIDELVDALREALDETLA  446 (449)
T ss_pred             ------EEEecccccccchhhhHHHHHHHHHHHCCeEEeecC---CEEEEcCCccCCHHHHHHHHHHHHHHHHHHHh
Confidence                  33322110  000 0235677788889999999963   11111112334899999999999999987654

>PRK07503 methionine gamma-lyase; Provisional

Probab=98.82  E-value=3.3e-07  Score=80.99  Aligned_cols=112  Identities=17%  Similarity=0.167  Sum_probs=66.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|+++|+++|+|++|......    .++. ...   .+++.|+||.++.+| .|.||+++++  ++.        
T Consensus       170 ~~I~~la~~~gi~lIvD~a~a~~~~~----~~l~-~g~---Di~v~S~tK~l~g~gd~~gG~v~~~~--~l~--------  231 (403)
T PRK07503        170 AAVAEIAHGAGAKVVVDNTYCTPYLQ----RPLE-LGA---DLVVHSATKYLGGHGDITAGLVVGGK--ALA--------  231 (403)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccC----Cchh-hCC---CEEEccccccccCCCceeEEEEEcCH--HHH--------
Confidence            47899999999999999999864322    1221 222   388999999998876 7888888655  333        


Q ss_pred             hhhhhHHhhhhh--h-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047983           80 HSISLNMRMDDY--L-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC  140 (233)
Q Consensus        80 ~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  140 (233)
                            .+++..  . ..+...++..++   ++..+ -+.+..+.++..++...+.+.|++.|.
T Consensus       232 ------~~l~~~~~~~~~g~~~s~~~a~---l~l~~-L~tl~~r~~~~~~na~~~a~~L~~~p~  285 (403)
T PRK07503        232 ------DRIRLEGLKDMTGAVMSPFDAF---LLMRG-LKTLALRMDRHCASAQAVAEWLARHPA  285 (403)
T ss_pred             ------HHHHhhhHHhCcCCCCCHHHHH---HHHcC-cchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                  223211  1 112222222121   11111 223444445556778888888877654

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=98.80  E-value=8.2e-08  Score=85.55  Aligned_cols=185  Identities=12%  Similarity=0.129  Sum_probs=90.7

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++|++||+++|.||+++.|..+|... .....+-...++   +++|.+ ..|   |++....   +.   .+.. ..
T Consensus       243 ~l~~lc~~~g~llI~DEV~tG~GrtG~~~-a~~~~gv~PDi~---~~gK~~-~~~---g~~~~~~---i~---~~~~-~~  307 (431)
T TIGR03251       243 AMRALCDEHDALLIFDEVQTGVGLTGTAW-AYQQLGVQPDIV---AFGKKT-QVC---GIMAGRR---VD---EVAD-NV  307 (431)
T ss_pred             HHHHHHHHcCCEEEEecchhccCccchHH-HHHhcCCCCCEE---EecccC-ccc---eEEecch---HH---Hhhh-hc
Confidence            68999999999999999999987665321 111122222233   578974 222   5554432   11   0110 00


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEE-EFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                      .  ........+++.++...+++.+.+ +.-.+ ...++.++.-+..++.+.+..++.+++....... |.++.      
T Consensus       308 ~--~~~~~~~~T~~gnpl~~aaa~a~L-~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~-G~~~~------  377 (431)
T TIGR03251       308 F--AVPSRLNSTWGGNLVDMVRATRIL-EIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGR-GLMCA------  377 (431)
T ss_pred             c--cCccccCCCCCCCHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHHHHHhCccceeccccc-ceeEE------
Confidence            0  000011222333322322333333 21111 2223333333333344433333344232223344 44444      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKA  224 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~  224 (233)
                         +.++..      +....+.+.+.++||.+.|..    .+.+|++..  .++++++++++.|.+
T Consensus       378 ---i~~~~~------~~~~~~~~~l~~~Gvl~~~~g----~~~lr~~P~l~~t~~eid~~l~~l~~  430 (431)
T TIGR03251       378 ---FDLPST------ADRDEVIRQLYREGVLLLGCG----ERSIRFRPPLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             ---EEeCCH------HHHHHHHHHHHhCCeEEecCC----CCeEEEECCccCCHHHHHHHHHHHHh
Confidence               334311      133445555668899998743    256777555  489999999998875

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=98.79  E-value=1.1e-07  Score=84.64  Aligned_cols=59  Identities=14%  Similarity=0.077  Sum_probs=42.4

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecC
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD   66 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~   66 (233)
                      +|.++|++||+++|.||++..+..++........+.++     +.+++|.++ .|+.+|.+++++
T Consensus       208 ~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~~~~gv~PD-----i~t~gK~lg-gG~p~~av~~~~  266 (431)
T PRK06209        208 EVRRLCHENGALFILDEMITGFRWHMRGAQKLYGIVPD-----LSCFGKALG-NGFAVSALAGKR  266 (431)
T ss_pred             HHHHHHHHcCCEEEEEcccccCCcCcchhhHHhCCCcc-----eeeehhhhc-CCcccEEEEEHH
Confidence            68999999999999999998875432111111222232     578899966 478999999987

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=98.79  E-value=4.4e-07  Score=80.18  Aligned_cols=114  Identities=14%  Similarity=0.123  Sum_probs=69.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceE-EEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~-G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+|++|....+..    ++ .++   .-+++.|++|.++..|.++ ||+++++  +.+.       
T Consensus       175 ~~I~~la~~~g~~vivD~a~a~~~~~~----~~-~~g---aDivv~S~tK~l~g~g~~~gG~v~~~~--~~~~-------  237 (403)
T PRK07810        175 AAVSELAHAAGAKVVLDNVFATPLLQR----GL-PLG---ADVVVYSGTKHIDGQGRVLGGAILGDR--EYID-------  237 (403)
T ss_pred             HHHHHHHHHcCCEEEEECCCCccccCC----hh-hcC---CcEEEccCCceecCCcCceeEEEEeCh--HHHH-------
Confidence            378999999999999999998644322    12 122   2388999999999999998 7777765  2221       


Q ss_pred             hhhhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           80 HSISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        80 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                            ..++.+. ..+...++..+++ .+   ..-+.+..+.++..++...+.+.|++.|.+
T Consensus       238 ------~~l~~~~~~~g~~~s~~~a~l-~l---~~L~tl~~R~~~~~~~a~~~a~~L~~~p~v  290 (403)
T PRK07810        238 ------GPVQKLMRHTGPALSAFNAWV-LL---KGLETLALRVRHSNASALRIAEFLEGHPAV  290 (403)
T ss_pred             ------HHHHHHHHHhCCCCCHHHHHH-HH---hccCcHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                  1222221 1222222221111 11   122345666666777777788888876544

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=98.78  E-value=2.4e-07  Score=82.22  Aligned_cols=58  Identities=17%  Similarity=0.207  Sum_probs=45.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecC
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD   66 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~   66 (233)
                      ++|+++|+++|+++|+|++|.....    ..++    .....+++.|+||.++++|+|+||+++++
T Consensus       162 ~~I~~la~~~~i~livD~t~~~~~~----~~~l----~~g~Divv~S~sK~l~g~G~~lGg~v~~~  219 (418)
T TIGR01326       162 EAIAEVAHAHGVPLIVDNTFATPYL----CRPI----DHGADIVVHSATKYIGGHGTAIGGVIVDG  219 (418)
T ss_pred             HHHHHHHHHcCCEEEEECCCchhhc----CCch----hcCCeEEEECccccccCCccceEEEEEec
Confidence            4789999999999999999974311    1111    12456999999999999999999999965

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.77  E-value=2.8e-07  Score=82.79  Aligned_cols=196  Identities=13%  Similarity=0.067  Sum_probs=100.7

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++|++||+++|.||+...|..+|... .....+.++     +-+++|..+ .| +.+|.+++++  ++.+.  +.. 
T Consensus       249 ~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PD-----iv~~gK~l~-gG~~Pi~av~~~~--ei~~~--~~~-  317 (460)
T PRK06916        249 GLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPD-----IMTAGKGLT-GGYLPIAITVTTD--EIYNA--FYG-  317 (460)
T ss_pred             HHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCCC-----eeeeehhhh-cCccccceeeecH--HHHHH--hhc-
Confidence            68899999999999999999986555321 111222232     347899855 57 5999999987  34321  100 


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc---CCCcccccCCCccEEEEEe
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE---IPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~~~~~~~~~~~~g~~~~~~  156 (233)
                      . ...........+++.++...+++++.+ +.-.++   ...+.++++-+++.+.|++   .+.+.. ....|.+ +-  
T Consensus       318 ~-~~~~~~~~~~~T~~gnpl~~aaa~a~l-~~l~~~---~l~~~~~~~g~~l~~~l~~l~~~~~v~~-vrG~Glm-~g--  388 (460)
T PRK06916        318 D-YEEQKTFFHGHSYTGNPLGCAVALANL-ELYEKT---NLIEQVARKTEYVATQLEDLFALKHVGD-IRQLGLM-VG--  388 (460)
T ss_pred             c-ccccCccccCCCCCCCHHHHHHHHHHH-HHHHhc---cHHHHHHHHHHHHHHHHHHhhcCCCeEE-eecCCce-ee--
Confidence            0 000000111122332222222333333 111111   2233344444444444443   222221 2333433 33  


Q ss_pred             cCCCcccccccccc--cCCCC---ChHHHHHHHHhccCEEEECCcccCCCCcEEEE--eecCHHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSL--LEGIN---SDTEFALKLAKEESIIVLPGITVGLKDWLRIT--FAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       157 ~~~~~~~~~~~~~~--~~~~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~--~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                             +.+..+.  .....   +....+...+.++||.+.|..     +.+|+.  +..+++++++++++|.+.+++.
T Consensus       389 -------iel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-----~~l~~~Ppl~it~~~id~~~~~l~~~l~~~  456 (460)
T PRK06916        389 -------IELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPLG-----NTIVFMPPLASTIDELDEMLRILYKAISDV  456 (460)
T ss_pred             -------EEeecccccccCCCchhhHHHHHHHHHHHCCeEEEecC-----CEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence                   2221110  00000   012345556668899998742     467775  4459999999999999999765

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=98.76  E-value=1.8e-07  Score=81.60  Aligned_cols=127  Identities=17%  Similarity=0.125  Sum_probs=76.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+|++|..-.+.    .++ ....+   +++.|++|.++..| .=.||+++++. ++.        
T Consensus       156 ~~I~~la~~~gi~vvvD~t~~~~~~~----~pl-~~gaD---ivv~S~tK~l~g~~d~~gG~v~~~~~-~l~--------  218 (364)
T PRK07269        156 EKVAKLAHAKGAKVIVDNTFYSPIYQ----RPI-ELGAD---IVLHSATKYLSGHNDVLAGVVVTNDL-ELY--------  218 (364)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccC----Cch-hhCCc---EEEecCceeccCCCcccceEEEeCcH-HHH--------
Confidence            47899999999999999997642211    122 22332   88999999887533 23478887653 233        


Q ss_pred             hhhhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccCCCccEEEE
Q 047983           80 HSISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCIT-CPKKPEGSMFVM  154 (233)
Q Consensus        80 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~g~~~~  154 (233)
                            .+++... ..+...++..+++..    ..-+.+..+.++.+++...+.+.|++.|.+. +++++.||++.+
T Consensus       219 ------~~~~~~~~~~G~~~s~~~a~l~~----~~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf  285 (364)
T PRK07269        219 ------EKLFYNLNTTGAVLSPFDSYLLM----RGLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGMISF  285 (364)
T ss_pred             ------HHHHHHHHHhCCCCCHHHHHHHH----cCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEE
Confidence                  2232221 122222222122211    1223466777777889999999998876543 334777888777

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=98.75  E-value=3.2e-07  Score=81.55  Aligned_cols=189  Identities=12%  Similarity=0.139  Sum_probs=106.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccc--cccCCccC-EEEEccCccccCCCCceEEEEE-ecCCCccccccch
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPM--GVFGSIVP-VLTLGSISKRWIVPGWRLGWLV-TSDPNGILQDLGV   76 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~--~~~~~~~~-~i~~~s~sK~~~~~G~R~G~~~-~~~~~~~~~~~~~   76 (233)
                      ++|.++|++||+++|+|++|+....   ....+  ..... ++ .+++.|++|.+..||+  |+++ ++++ +++     
T Consensus       225 ~eIa~la~k~gI~lIvDaAyg~~~~---~~~~~~~~g~~~-Grad~vv~s~hK~l~~pg~--Gg~I~~~d~-el~-----  292 (444)
T TIGR03531       225 EEIAKICANYDIPHIVNNAYGLQSN---KYMELINKAIKV-GRVDAVVSSTDKNFMVPVG--GAIIYSFDE-NFI-----  292 (444)
T ss_pred             HHHHHHHHHcCCEEEEECcCcCcCh---hhhhhhhccccc-cCCCeEEEeCccCCCCCCC--EEEEEECCH-HHH-----
Confidence            4799999999999999999996221   11111  11111 12 3667799999888887  6655 5443 333     


Q ss_pred             hhhhhhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCCccEE
Q 047983           77 AFFHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP---CITCPKKPEGSMF  152 (233)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~g~~  152 (233)
                               ..+....... ...++. .+...++ ....+.++++.+...++++++.+.|+++.   +......|+..+-
T Consensus       293 ---------~~i~~~y~g~-~~~s~~~~~~~~ll-~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is  361 (444)
T TIGR03531       293 ---------QEISKSYPGR-ASASPSLDVLITLL-SLGSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPIS  361 (444)
T ss_pred             ---------HHHHHhccCC-CCChHHHHHHHHHH-HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCcee
Confidence                     2222211111 112222 3333333 33457788888889999999988887742   3333345555555


Q ss_pred             EEEecCCCcccccccccccCCCCChHHHHHHHHhccCE---E-EECCc-------ccCC---------CCcEEE--Eeec
Q 047983          153 VMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESI---I-VLPGI-------TVGL---------KDWLRI--TFAV  210 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi---~-v~pg~-------~f~~---------~~~~Rl--~~~~  210 (233)
                      +.         +.+.  .+.+  .+...+--+|-.++|   . |.||.       .|..         ..|+-+  +++.
T Consensus       362 ~~---------~~~~--~~~~--~~~~~~g~~l~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~  428 (444)
T TIGR03531       362 SA---------MTLS--TLKG--KDPTMLGSMLYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGM  428 (444)
T ss_pred             EE---------Eecc--cccc--cCHHHHHHHHHhCCCCCceeecCCCceEECCEEeecccccccCCCchhHHHHHHhCC
Confidence            55         2232  2111  133333344434443   3 34566       3421         235544  3445


Q ss_pred             CHHHHHHHHHHHHHH
Q 047983          211 EPSAFEIGLGRMKAF  225 (233)
Q Consensus       211 ~~~~l~~~~~~l~~~  225 (233)
                      +.++++..+++|.+.
T Consensus       429 ~~~~~~~~~~~l~~~  443 (444)
T TIGR03531       429 TKEDVDTFVSRLEKS  443 (444)
T ss_pred             cHHHHHHHHHHHhhc
Confidence            889999999999865

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=98.73  E-value=6.4e-07  Score=77.22  Aligned_cols=194  Identities=18%  Similarity=0.153  Sum_probs=99.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCc--cccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSIS--KRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s--K~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|.++|+++|+++|+|++++........  ++   +.. ..+.+.|++  |.+  ++.+.|+++++++ ++.+.+....
T Consensus       123 ~~i~~l~~~~~i~li~D~a~~~g~~~~~~--~~---~~~-~d~~~~S~~~~K~~--~~~~gg~~~~~~~-~~~~~~~~~~  193 (352)
T cd00616         123 DAIMAIAKRHGLPVIEDAAQALGATYKGR--KV---GTF-GDAGAFSFHPTKNL--TTGEGGAVVTNDE-ELAERARLLR  193 (352)
T ss_pred             HHHHHHHHHcCCeEEEECCCCCCCeECCE--Ec---ccC-cceeEEcCCCCCCC--cccCceEEEECCH-HHHHHHHHHH
Confidence            47899999999999999999853221111  11   111 124566765  876  3445688888753 2332111100


Q ss_pred             hhhhhhHH-hhhh-hhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCc---c-EE
Q 047983           79 FHSISLNM-RMDD-YLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEG---S-MF  152 (233)
Q Consensus        79 ~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---g-~~  152 (233)
                      .+...... +... ....+...+....+++.    ...+.+++..++.+++.+++.+.|++++++..+..+..   . ..
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~----~~l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~  269 (352)
T cd00616         194 NHGRDRDRFKYEHEILGYNYRLSEIQAAIGL----AQLEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHL  269 (352)
T ss_pred             HcCCCCCCCccccceeeeccCcCHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEE
Confidence            00000000 0000 00001111111111111    12234566777778899999999988777664333321   1 22


Q ss_pred             EEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-------------------------CCcEEEE
Q 047983          153 VMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-------------------------KDWLRIT  207 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------------~~~~Rl~  207 (233)
                      +.         +.++..  .+  .+.+.+.+.|.++||.+..  .+.+                         .+.+|++
T Consensus       270 ~~---------~~~~~~--~~--~~~~~v~~~L~~~gI~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~  334 (352)
T cd00616         270 YV---------IRLDPE--AG--ESRDELIEALKEAGIETRV--HYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLP  334 (352)
T ss_pred             EE---------EEECCc--CC--CCHHHHHHHHHHCCCCeee--ecCccccCHhhhhccCCCcCCChHHHHHHhCeEEcc
Confidence            22         222210  01  1555666677888996642  1211                         2579998


Q ss_pred             eec--CHHHHHHHHHHH
Q 047983          208 FAV--EPSAFEIGLGRM  222 (233)
Q Consensus       208 ~~~--~~~~l~~~~~~l  222 (233)
                      +..  ++++++..++.|
T Consensus       335 ~~~~~t~~di~~i~~~l  351 (352)
T cd00616         335 LHPSLTEEEIDRVIEAL  351 (352)
T ss_pred             CCCCCCHHHHHHHHHHh
Confidence            886  788888777765

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=98.73  E-value=3.8e-07  Score=79.47  Aligned_cols=173  Identities=10%  Similarity=0.095  Sum_probs=97.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++|++||+++|+||+...+ ..|.-. .....+-.+.   +-+++|.++. |+++|.++.+.  ++      .    
T Consensus       187 ~lr~lc~~~gillI~DEv~tG~-RtG~~~-a~~~~gv~PD---iv~~gK~lgg-G~P~~a~~~~~--~~------~----  248 (364)
T PRK04013        187 TLRDLTEDVGALLIADEVQSGL-RTGKFL-AIEHYKVEPD---IVTMGKGIGN-GVPVSLTLTNF--DV------E----  248 (364)
T ss_pred             HHHHHHHHcCCEEEEechhhcC-CCCchh-HHHhcCCCCC---EEEecccccC-CceeEEEEecc--cc------c----
Confidence            6889999999999999999998 665321 1211222222   4466999665 89999999876  22      1    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                          . .....+++.++...+++.+.+ +.- .++.+++.++.       + +.+.. +.+.. .... |.++-      
T Consensus       249 ----~-~~~~~T~~gnp~~~aaa~a~l-~~i~~~~l~~~~~~~-------l-~~l~~-~~v~~-vRG~-Gl~~g------  305 (364)
T PRK04013        249 ----R-GKHGSTFGGNPLACKAVAVTL-RILRRERLVEKAGEK-------F-IEIKG-ERVVT-TRGR-GLMIG------  305 (364)
T ss_pred             ----C-CCcCCCCCcCHHHHHHHHHHH-HHHHhccHHHHHHHH-------H-HHhcc-Cccee-eeeC-cEEEE------
Confidence                1 112223333233322333332 211 11223332222       2 22222 22211 2233 55555      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHHh
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~  230 (233)
                         +.+.  .      ....+.+.+.++|+.+.+..    .+.+|+...  .+++++++++++|.+.+.+.-
T Consensus       306 ---ve~~--~------~~~~i~~~~~~~Gll~~~~g----~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~~  362 (364)
T PRK04013        306 ---IVLK--K------PVGKYVEELQNRGYLVHTAG----QRVIRLLPPLIISKDTMEEAKSAIEGVINDIL  362 (364)
T ss_pred             ---EEeC--C------cHHHHHHHHHhCCcEEeeCC----CCEEEEeCCcccCHHHHHHHHHHHHHHHHHHh
Confidence               3332  1      23344555667899997632    367888665  489999999999999998653

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.69  E-value=3.1e-07  Score=87.21  Aligned_cols=197  Identities=13%  Similarity=0.079  Sum_probs=100.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|.||+...|...|.-+ ....++-.   --|-+++|.. ..| +++|.+++++  ++++.  +.   
T Consensus       610 ~lr~lc~~~gilLI~DEV~TGfGRtG~~f-a~e~~gv~---PDIi~~gKgL-tgG~~Plaa~l~~~--~I~~~--f~---  677 (817)
T PLN02974        610 ALVQVCRSRKIPVIFDEVFTGLWRLGVES-AWELLGCK---PDIACYAKLL-TGGLVPLAATLATE--EVFEA--FR---  677 (817)
T ss_pred             HHHHHHHHhCCEEEEeecccCCCcccchh-hHHhcCCC---CCEEeecccc-cCCCCccEEEEEcH--HHHHh--hc---
Confidence            68999999999999999999998777422 11112221   2255889984 458 6999999987  44431  10   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHH--hhhc-HHHHHHHHHHHHHHHH-HHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQI--LEKT-EEEFFSKITDILREAA-DICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~-~~~~~~~~~~~~~~~~-~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                      .......+.+..+++.++..-+++++.+  ++.. ..+.+.+..+.+.+.. +.+.+.|.+.+.+.. +... |.++-  
T Consensus       678 ~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~-VRg~-Gl~~~--  753 (817)
T PLN02974        678 GPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVER-VVSL-GTVLA--  753 (817)
T ss_pred             cccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeE-EEee-eeEEE--
Confidence            0000001112223333333322444433  1111 1112222222222222 233233444443322 2333 44444  


Q ss_pred             cCCCccccccccccc-CCC-CChHHHHHHHHh-ccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLL-EGI-NSDTEFALKLAK-EESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~ll~-~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l  226 (233)
                             +.+..... .+. ......+.+.+. ++||.++|..     +.+|+...  .+++++++.++.|.+.|
T Consensus       754 -------iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~G-----nvi~l~pP~~i~~e~l~~~~~~l~~~~  816 (817)
T PLN02974        754 -------LELDAEGSGSGYSSLYARSVVRRLRREDGIYARPLG-----NVVYLMCGPTTSPETCTRLLRKVYRRL  816 (817)
T ss_pred             -------EEEecCCcccccchHHHHHHHHHHHHhCCEEEEecC-----CEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence                   23321100 010 011234444555 8899999842     67776433  48999999999998765

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=98.64  E-value=3.8e-07  Score=81.71  Aligned_cols=181  Identities=13%  Similarity=0.089  Sum_probs=89.8

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|.||+...|..+|..+ .....+.....   +.+++|.++..|    ++++.+   .+..   .   
T Consensus       276 ~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PD---i~t~gK~lg~gG----~~~~~~---~~~~---~---  339 (464)
T TIGR00699       276 KLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPD---MVTFSKKFQTAG----YFFHDP---AFRP---N---  339 (464)
T ss_pred             HHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCC---EEEehhhhccCC----ccccch---hccC---C---
Confidence            68999999999999999999986655321 11112221112   467899864444    333332   1110   0   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHH--hhh-cHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC--CCccEEEEE
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQI--LEK-TEEEFFSKITDILREAADICCDRLKEIPCITCPKK--PEGSMFVMY  155 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~g~~~~~  155 (233)
                           .......+++.++...+++.+.+  ++. +..+...++-+.+++..+.+.   ++++....-..  .. |.++- 
T Consensus       340 -----~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~---~~~~~~i~~vRg~G~-Glm~g-  409 (464)
T TIGR00699       340 -----KPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQ---KKYPEFIQNLRGKGR-GTFIA-  409 (464)
T ss_pred             -----CCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH---HhCCCceeeecccCe-EEEEE-
Confidence                 11112223332222222333332  111 111222222233333222221   22432211122  33 44444 


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHH
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l  226 (233)
                              +.++.+      .....+.+.+.++||.+.+.    ..+.+|+...  .+++++++++++|.+.+
T Consensus       410 --------ie~~~~------~~~~~i~~~~~~~Gvl~~~~----g~~~ir~~Ppl~it~~eid~~~~~l~~~~  464 (464)
T TIGR00699       410 --------WDTPDE------AKRDKLLKKARNNGVNIGGC----GVKAIRLRPMLVFQKHHADIFLEIISKII  464 (464)
T ss_pred             --------EecCCH------HHHHHHHHHHHHCCcEEecC----CCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence                    333211      12445556666789999763    2367888766  38999999999998753

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=98.63  E-value=1.3e-06  Score=76.40  Aligned_cols=200  Identities=15%  Similarity=0.165  Sum_probs=98.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccc-cCCCccccccccCCccCEEEEccCc--cccCCCCceEEEEEecCCCccccccchh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLV-FGNTHFVPMGVFGSIVPVLTLGSIS--KRWIVPGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~s--K~~~~~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++|+++|++||++||+|++|+.+. +++..   +..+..    +.+.||.  |.+ .+|.+.++++.++  ++.+++...
T Consensus       136 ~~i~~la~~~~i~vIeD~a~a~g~~~~~~~---~g~~~~----~~~~Sf~~~K~l-~~g~gG~~~~~~~--~~~~~~~~~  205 (375)
T PRK11706        136 DTIMALAKKHNLFVVEDAAQGVMSTYKGRA---LGTIGH----IGCFSFHETKNY-TAGEGGALLINDP--ALIERAEII  205 (375)
T ss_pred             HHHHHHHHHcCCEEEEECccccccccCCee---eecCcC----EEEEeCCCCccc-cccCCeEEEECCH--HHHHHHHHH
Confidence            378999999999999999999875 33321   211111    2233333  986 4587877777655  454322111


Q ss_pred             hhhhhhhHHhhh----hhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCCc
Q 047983           78 FFHSISLNMRMD----DYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP---CITCPKKPEG  149 (233)
Q Consensus        78 ~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~  149 (233)
                      +.+..+......    .+.....+.+... ...+++..... +.+++..+.-+++.+...+.|+.++   .+..+..|.+
T Consensus       206 ~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql-~~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~  284 (375)
T PRK11706        206 REKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQL-EAADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDD  284 (375)
T ss_pred             HHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCC
Confidence            111000000000    0000011122111 23333321121 2355566666667777777777654   2221112222


Q ss_pred             ----cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCc----c-------------cCC-----CCc
Q 047983          150 ----SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGI----T-------------VGL-----KDW  203 (233)
Q Consensus       150 ----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~----~-------------f~~-----~~~  203 (233)
                          .++.|         +.++..      .+.+.+.+.|.++||.+.+..    .             |..     ..-
T Consensus       285 ~~~~~~~~~---------~~~~~~------~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~  349 (375)
T PRK11706        285 CKHNAHMFY---------IKLRDL------EDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERL  349 (375)
T ss_pred             CceeeEEEE---------EEECCc------CCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCc
Confidence                22445         334321      156677777888899875321    0             100     233


Q ss_pred             EEEEeec--CHHHHHHHHHHHHHHH
Q 047983          204 LRITFAV--EPSAFEIGLGRMKAFY  226 (233)
Q Consensus       204 ~Rl~~~~--~~~~l~~~~~~l~~~l  226 (233)
                      +.+.+..  ++++++..++.|++++
T Consensus       350 l~lP~~~~l~~~~~~~i~~~i~~~~  374 (375)
T PRK11706        350 LRLPLFYNLTDVEQRTVIDTILEFF  374 (375)
T ss_pred             EeccCCCCCCHHHHHHHHHHHHHHh
Confidence            4444443  6777788777777654

>TIGR01814 kynureninase kynureninase

Probab=98.62  E-value=3e-06  Score=74.89  Aligned_cols=193  Identities=11%  Similarity=0.014  Sum_probs=99.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCcccc-CCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|+++|+++++|++++.    |..+..+..+   +--+++.|..|.+ +.||  .|..+.++...-... .+.-.
T Consensus       191 ~~i~~~~~~~g~~~~vD~aq~~----G~~~id~~~~---gvD~~~~s~hK~l~g~pG--~~l~v~~~~~~~~~p-~~~g~  260 (406)
T TIGR01814       191 AAITRAAHAKGALVGFDLAHAV----GNVPLDLHDW---GVDFACWCTYKYLNAGPG--AGAFVHEKHAHTERP-RLAGW  260 (406)
T ss_pred             HHHHHHHHHcCCEEEEEccccc----CCcccccccC---CCCEEEEcCccccCCCCC--eEEEEehhhhhhcCC-CCCcc
Confidence            3789999999999999999997    3222233222   2338899999975 4667  443333331000100 00000


Q ss_pred             hhhh----hH--Hhhhh-hhhhccC-cchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcC----CCcccccC
Q 047983           80 HSIS----LN--MRMDD-YLLLSES-VYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEI----PCITCPKK  146 (233)
Q Consensus        80 ~~~~----~~--~~~~~-~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~  146 (233)
                      ....    ..  ..... ...+..+ ++... .++.+.++...+.-.++.+++.++..+++.+.|+++    +++.. ..
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i-~~  339 (406)
T TIGR01814       261 WGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTI-IT  339 (406)
T ss_pred             cCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEE-eC
Confidence            0000    00  00000 0001112 22222 333333322112224666777777777887777664    23432 22


Q ss_pred             C-----CccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--c-CHHHHHHH
Q 047983          147 P-----EGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--V-EPSAFEIG  218 (233)
Q Consensus       147 ~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~-~~~~l~~~  218 (233)
                      |     .+++. .         +.++  .      +.+.+.+.|.++||.+...    ..+.+|+|++  . ++++++.+
T Consensus       340 ~~~~~~r~~~v-~---------~~~~--~------~~~~~~~~L~~~gi~v~~~----~~~~iRiS~~~~~nt~~did~l  397 (406)
T TIGR01814       340 PRDHAQRGCQL-S---------LTHP--V------PGKAVFQALIKRGVIGDKR----EPSVIRVAPVPLYNTFVDVYDA  397 (406)
T ss_pred             CCChhhcCCeE-E---------EEec--C------CHHHHHHHHHHCCEEEecc----CCCeEEEechhccCCHHHHHHH
Confidence            2     12333 3         2232  1      2334555566789987532    2368999984  3 89999999


Q ss_pred             HHHHHHHH
Q 047983          219 LGRMKAFY  226 (233)
Q Consensus       219 ~~~l~~~l  226 (233)
                      ++.|++++
T Consensus       398 ~~~l~~~~  405 (406)
T TIGR01814       398 VNVLEEIL  405 (406)
T ss_pred             HHHHHHHh
Confidence            99998764

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=98.62  E-value=2.3e-06  Score=75.21  Aligned_cols=113  Identities=13%  Similarity=0.091  Sum_probs=64.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceE-EEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~-G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+|++|......    .++. .   +.-+++.|+||.++.+|-.+ |++++.+. ++.        
T Consensus       157 ~~I~~la~~~gi~livD~t~a~~~~~----~~l~-~---GaDivv~S~sK~l~g~~d~~gG~vi~~~~-~~~--------  219 (385)
T PRK08574        157 PEVAKAAKELGAILVVDNTFATPLLY----RPLR-H---GADFVVHSLTKYIAGHNDVVGGVAVAWSG-EFL--------  219 (385)
T ss_pred             HHHHHHHHHcCCEEEEECCCCccccC----Chhh-h---CCcEEEeeCceeecCCCCceeEEEEECcH-HHH--------
Confidence            47899999999999999999642211    1221 2   23488999999988777654 76776553 233        


Q ss_pred             hhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047983           80 HSISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC  140 (233)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  140 (233)
                            .+++.... .+...++..++   ++..+ -+.+....++..++...+.+.|++.|.
T Consensus       220 ------~~~~~~~~~~g~~~~p~~a~---l~l~~-l~tL~~R~~~~~~na~~la~~L~~~p~  271 (385)
T PRK08574        220 ------EELWEWRRRLGTIMQPFEAY---LVLRG-LKTLEVRFERQCRNAMAIAEFLSEHPK  271 (385)
T ss_pred             ------HHHHHHHHhcCCCCCHHHHH---HHHcc-cCcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence                  33322222 22222222111   11111 122444555556677788888877553

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=98.62  E-value=2.2e-06  Score=75.14  Aligned_cols=61  Identities=23%  Similarity=0.332  Sum_probs=41.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccc-cCCCccccccccCCccCEEEEccCc----cccCCCCceEEEEEecCCCcccc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLV-FGNTHFVPMGVFGSIVPVLTLGSIS----KRWIVPGWRLGWLVTSDPNGILQ   72 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~s----K~~~~~G~R~G~~~~~~~~~~~~   72 (233)
                      ++|+++|++||++||+|++|+... +.+....++         ..+++||    |.+ .+|.+.||++++++ ++.+
T Consensus       136 ~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~---------~~~~~fSf~~~K~l-~~g~~gG~v~~~~~-~~~~  201 (376)
T TIGR02379       136 DTIMALANKHQLFVIEDAAQGVMSTYKGRALGSI---------GHLGTFSFHETKNY-TSGGEGGALLINDQ-AFIE  201 (376)
T ss_pred             HHHHHHHHHCCCEEEEECccccCCccCCcccCCC---------CCEEEEeCCCCCcC-cccCCceEEEECCH-HHHH
Confidence            378999999999999999999865 444322111         1233444    774 56778899999864 4544

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.61  E-value=9e-07  Score=74.16  Aligned_cols=186  Identities=15%  Similarity=0.132  Sum_probs=107.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +..++|.+||+++|.||+...+..+|.    +.+.+..+..--|--|.|.++..=.++..+.+++  +++          
T Consensus       232 ~vreLCtkynvl~I~DEvQTGl~RTGk----~la~d~env~PDivilgKalSGG~~Pvsavl~~~--~im----------  295 (427)
T KOG1402|consen  232 KVRELCTKYNVLLIADEVQTGLARTGK----LLACDYENVRPDIVILGKALSGGVYPVSAVLADD--DIM----------  295 (427)
T ss_pred             HHHHHHHhhcEEEEehhhhhcccccCc----EEEeehhhcCCCeEEEeccccCCeeeeEEEEecH--HHH----------
Confidence            467999999999999999999988873    3333331111123346788777778888888887  333          


Q ss_pred             hhhHHhhhhh-hhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEE
Q 047983           82 ISLNMRMDDY-LLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVM  154 (233)
Q Consensus        82 ~~~~~~~~~~-~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~  154 (233)
                          ..+... .+.+.+.++..  .++|++- --.++-+.++...   .-..|+..|++    +|.+..-+... |++.-
T Consensus       296 ----~~~~pgeHgsTyggNpLg~~vaiAale-vi~eekL~era~~---lG~~l~~~L~~l~~~~p~~v~~VRGr-Gl~~a  366 (427)
T KOG1402|consen  296 ----LNIKPGEHGSTYGGNPLGCAVAIAALE-VIVEEKLVERAAK---LGEILRDQLNKLQKKFPHVVKEVRGR-GLLNA  366 (427)
T ss_pred             ----hccCCCccccccCCChHHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHhccccccchhheeecc-ceEEE
Confidence                222211 12233344444  6666651 1223323333333   33344444444    33333212222 56655


Q ss_pred             EecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHH
Q 047983          155 YCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~  227 (233)
                               +.++.....+ .+.++.++ .++++|++..|..    .+-+|++-.  .++++++++++.+.+.+.
T Consensus       367 ---------i~i~~~~~~~-~~aw~~cl-~lk~~g~LAkptH----~~IiRfaPPL~I~e~dl~eg~e~i~k~i~  426 (427)
T KOG1402|consen  367 ---------IVINPSKTSG-QDAWDVCL-ALKENGLLAKPTH----GNIIRFAPPLVISEEDLREGIEAIEKTIA  426 (427)
T ss_pred             ---------EEeccccccc-hhHHHHHH-cccccccccCCCC----CCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence                     4443222111 13445554 4678899998865    267888655  389999999999988764

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.59  E-value=3.2e-06  Score=75.21  Aligned_cols=58  Identities=19%  Similarity=0.301  Sum_probs=44.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecC
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD   66 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~   66 (233)
                      ++|.++|+++|++||+|++|.....    ..++ ..+.   -|++.|++|.++++|.++|.+++.+
T Consensus       163 ~~I~~la~~~~i~vVvD~a~a~~~~----~~p~-~~ga---Divv~S~tK~l~G~g~~~gG~v~~~  220 (425)
T PRK06084        163 QALADAAHRHGVPLIVDNTVATPVL----CRPF-EHGA---DIVVHSLTKYIGGHGTSIGGIVVDS  220 (425)
T ss_pred             HHHHHHHHHcCCEEEEECCCccccc----CChh-hcCC---CEEEECchhcccccccceeEEEEeC
Confidence            4789999999999999999985321    1122 1222   2899999999999999999988854

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=98.59  E-value=2e-06  Score=75.36  Aligned_cols=112  Identities=14%  Similarity=0.037  Sum_probs=65.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC-CCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+|++|....    ...++ .+..   -+++.|.+|.++. .|.+.|+++++++ .+.        
T Consensus       151 ~~I~~la~~~g~~vivD~a~~~~~----~~~~l-~~g~---Di~v~S~tK~l~G~~~~~~G~v~~~~~-~~~--------  213 (378)
T TIGR01329       151 RKISEMAHAQNALVVVDNTMMSPL----LCNPL-ELGA---DIVYHSATKFLAGHSDVMAGVLAVKGE-EIA--------  213 (378)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccc----cCChh-hcCC---cEEEEecceeccCCccceeEEEEeCcH-HHH--------
Confidence            478999999999999999985422    11223 2233   2889999997765 4688999998663 222        


Q ss_pred             hhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 047983           80 HSISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP  139 (233)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  139 (233)
                            .+++.... .+...++..+   .++ ...-+.+..+.++-.++...+.+.|++.+
T Consensus       214 ------~~~~~~~~~~G~~~~~~~a---~l~-~~~l~tl~~R~e~~~~na~~la~~L~~~~  264 (378)
T TIGR01329       214 ------KKVYFLQNSTGSGLAPFDC---WLL-LRGIKTLAIRIEKQQENARAIAMFLSTHP  264 (378)
T ss_pred             ------HHHHHHHHhcCCcCCHHHH---HHH-HccCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence                  23332222 2222222211   221 11223455556666777777777776644

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=98.58  E-value=4.6e-06  Score=72.45  Aligned_cols=205  Identities=17%  Similarity=0.120  Sum_probs=122.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC-CCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||..+|+|-+=+-    |.....+   +.+.--+.+.+--|.++. ||  +|.+..++  ...+.++-.+.
T Consensus       151 ~~I~~~~k~~g~l~iVDaVsS~----Gg~~~~v---d~wgiDv~itgSQK~l~~PPG--la~v~~S~--~a~e~~~~~~~  219 (383)
T COG0075         151 KEIAKAAKEHGALLIVDAVSSL----GGEPLKV---DEWGIDVAITGSQKALGAPPG--LAFVAVSE--RALEAIEERKH  219 (383)
T ss_pred             HHHHHHHHHcCCEEEEEecccC----CCcccch---hhcCccEEEecCchhccCCCc--cceeEECH--HHHHHHhcCCC
Confidence            4799999999999999988775    2233333   344444889999998855 67  57777776  23321111111


Q ss_pred             hh--hhhHHhhhhh---hhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEE
Q 047983           80 HS--ISLNMRMDDY---LLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFV  153 (233)
Q Consensus        80 ~~--~~~~~~~~~~---~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~  153 (233)
                      .+  .++......+   ..+...++... .++...++.-..+=++...++.+++.+.+++.++.+ ++..+..+  +...
T Consensus       220 ~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~~~--~~~s  296 (383)
T COG0075         220 PSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL-GLELFADP--ERRS  296 (383)
T ss_pred             CceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCccccCc--ccCC
Confidence            10  1111111111   11122223333 566555543333447888999999999999999987 44333312  1111


Q ss_pred             EEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEE-eec-CHHHHHHHHHHHHHHHHHH
Q 047983          154 MYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRIT-FAV-EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~-~~~-~~~~l~~~~~~l~~~l~~~  229 (233)
                      +     -...+..|.    ++ ++.+....+++++|+.+.+|..--....+||. ++. ..+++..++..|...+.+.
T Consensus       297 ~-----tvta~~~P~----g~-~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~  364 (383)
T COG0075         297 P-----TVTAIKVPE----GV-DDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALREL  364 (383)
T ss_pred             C-----ceEEEECCC----CC-CcHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHc
Confidence            1     000133443    33 23344447888889999886544446789994 444 8889999999999999876

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=98.58  E-value=2.8e-06  Score=72.70  Aligned_cols=190  Identities=19%  Similarity=0.153  Sum_probs=109.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +..++|+++|.+.|.||+.+.|..+|    .+..++.++.+--|-|++|. ...|+.+|.+++++  ++.   ...    
T Consensus       237 a~~~~v~k~Ggl~IaDEVqtGfGRtG----~~wgfe~h~v~PDIvTmAKg-iGnG~Pl~AVvtt~--EIa---~v~----  302 (442)
T KOG1404|consen  237 AAYKVVRKRGGLFIADEVQTGFGRTG----HMWGFESHGVVPDIVTMAKG-IGNGFPLGAVVTTP--EIA---DVL----  302 (442)
T ss_pred             HHHHHHHHcCCEEEehhhhhcccccc----ccccccccCCCccHHHHHhh-ccCCCcceeeecCH--HHH---HHH----
Confidence            46789999999999999999998777    46666776777778899999 66789999999998  333   122    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCCccEEEEEecCCC
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE-IPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                         ..+...+++++.++.+-+.+++. ++.-.++.+++...........=..+|++ .+-+.. ++.. |.++-      
T Consensus       303 ---~~~~~~fnTyggnP~a~avg~aV-L~Vikee~LqE~aa~vG~yl~~~l~~l~d~h~iIGd-VRG~-GLm~G------  370 (442)
T KOG1404|consen  303 ---NQKSSHFNTYGGNPVACAVGLAV-LKVIKEENLQENAAEVGSYLLEKLAALKDKHPIIGD-VRGR-GLMLG------  370 (442)
T ss_pred             ---HhccccccccCCCchhHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCceee-cccc-eeEEE------
Confidence               01222344444433333233333 32223444444444444433333333333 222221 2333 33333      


Q ss_pred             cccccc-ccc-c-cCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHH
Q 047983          161 KCLLKL-NYS-L-LEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRM  222 (233)
Q Consensus       161 ~~~~~~-~~~-~-~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l  222 (233)
                         +++ +.. + .++.......+-+..+++|+.|--|+.+|  +.+||+-.  .+.++++-+..-.
T Consensus       371 ---vE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G--~vfriaPPlciT~edi~f~~~~~  432 (442)
T KOG1404|consen  371 ---VELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHG--NVFRIAPPLCITKEDIDFAVEYF  432 (442)
T ss_pred             ---EEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccccc--eEEEecCCeeccHHHHHHHHHHH
Confidence               222 111 0 01111133556667779999997777777  48999554  3777776555544

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=98.57  E-value=4.7e-06  Score=73.29  Aligned_cols=113  Identities=13%  Similarity=0.073  Sum_probs=70.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC-CCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+|++|....+..    ++ .++.+   +++.|++|.+++ .+.+.|+++++++ ++.        
T Consensus       158 ~~I~~la~~~gi~vIvDea~~~~~~~~----pl-~~GaD---ivv~S~tK~l~G~~d~~gG~i~~~~~-~~~--------  220 (388)
T PRK08861        158 AELCQKAKAVGALVAVDNTFLTPVLQK----PL-ELGAD---FVIHSTTKYINGHSDVIGGVLITKTK-EHA--------  220 (388)
T ss_pred             HHHHHHHHHcCCEEEEECCccccccCC----Cc-ccCCC---EEEeecceeccCCCcceeEEEEecHH-HHH--------
Confidence            368999999999999999998644321    22 22332   889999998876 4688999988652 222        


Q ss_pred             hhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047983           80 HSISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC  140 (233)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  140 (233)
                            .+++.... .+...++.    .+++-...-+.+.-+.++-.++...+.+.|+..|.
T Consensus       221 ------~~~~~~~~~~G~~~~p~----~a~l~~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~  272 (388)
T PRK08861        221 ------EELAWWGNCIGATGTPF----DSYMTLRGIRTLGARMRVHEESAQQILAYLQTQSL  272 (388)
T ss_pred             ------HHHHHHHhccCCCCChH----HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                  33332222 22222332    11121223345556667778888888888887653

>PLN02651 cysteine desulfurase

Probab=98.56  E-value=2.3e-06  Score=74.52  Aligned_cols=177  Identities=15%  Similarity=0.029  Sum_probs=97.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|+++|+++++|.+++.    +..+..+..++.   -+++.|..|. +.| .-+|++..++  ....++.-.   
T Consensus       158 ~~I~~~~~~~g~~~~vD~a~~~----g~~~~~~~~~~~---D~~~~s~hK~-~gp-~G~g~l~v~~--~~~~~l~p~---  223 (364)
T PLN02651        158 EEIGELCREKKVLFHTDAAQAV----GKIPVDVDDLGV---DLMSISGHKI-YGP-KGVGALYVRR--RPRVRLEPL---  223 (364)
T ss_pred             HHHHHHHHHcCCEEEEEcchhh----CCcccCcccCCC---CEEEechhhh-CCC-CceEEEEEcC--CCCCCCCcc---
Confidence            4789999999999999999985    222223333333   3888899995 433 3489988887  222211100   


Q ss_pred             hhhhHHhhhhhhhhccCcchH-H-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccC--CC---ccEE
Q 047983           81 SISLNMRMDDYLLLSESVYTT-V-GAVPQILEKTEEEFFSKITDILREAADICCDRLKE-IPCITCPKK--PE---GSMF  152 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~--~~---~g~~  152 (233)
                      ...  ... . .....+++.. . .++.+.++-- .+..++.+++.++.++++.+.|++ ++++..+.+  ++   .+..
T Consensus       224 ~~g--~~~-~-~~~~~GT~~~~~~~~l~~al~~~-~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~  298 (364)
T PLN02651        224 MSG--GGQ-E-RGRRSGTENTPLVVGLGAACELA-MKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTL  298 (364)
T ss_pred             ccC--CCc-c-CCccCCCccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEE
Confidence            000  000 0 0011222222 2 3333333221 223467778888888888888875 566554221  11   1222


Q ss_pred             EEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-------------------CCcEEEEeec--C
Q 047983          153 VMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-------------------KDWLRITFAV--E  211 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------~~~~Rl~~~~--~  211 (233)
                      .          +.++     ++  +.+.+...|.+  |.+..|+.+..                   .+.+|+|++.  +
T Consensus       299 ~----------~~~~-----~~--~~~~~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t  359 (364)
T PLN02651        299 N----------LSFA-----YV--EGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTT  359 (364)
T ss_pred             E----------EEeC-----CC--CHHHHHHHhCC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCC
Confidence            2          2222     22  34455555654  99998875421                   2689999996  5


Q ss_pred             HHHH
Q 047983          212 PSAF  215 (233)
Q Consensus       212 ~~~l  215 (233)
                      ++++
T Consensus       360 ~~di  363 (364)
T PLN02651        360 EEEV  363 (364)
T ss_pred             HHHc
Confidence            6554

>PRK05939 hypothetical protein; Provisional

Probab=98.56  E-value=3.5e-06  Score=74.30  Aligned_cols=58  Identities=24%  Similarity=0.256  Sum_probs=44.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecC
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD   66 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~   66 (233)
                      ++|+++|+++|+++|+|++|....    ...+.    .....+++.|+||.++..|.++||+++++
T Consensus       151 ~~I~~la~~~gi~livD~t~a~~~----~~~~~----~~gaDivv~S~sK~~~g~g~~igg~v~~~  208 (397)
T PRK05939        151 AGIGALCRERGLLYVVDNTMTSPW----LFRPK----DVGASLVINSLSKYIAGHGNALGGAVTDT  208 (397)
T ss_pred             HHHHHHHHHcCCEEEEECCccccc----ccCcc----ccCCEEEEecCeecccCCCCeEEEEEecC
Confidence            378999999999999999986421    11111    12345899999999999999999988854

>PRK08064 cystathionine beta-lyase; Provisional

Probab=98.55  E-value=4.4e-06  Score=73.57  Aligned_cols=113  Identities=13%  Similarity=0.055  Sum_probs=69.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC-CCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|+++|+++|+|++|......    .++ .+   ...+++.|+||.++. +|...|++++.++ ++.        
T Consensus       158 ~~I~~la~~~g~~vvvD~a~~~~~~~----~~~-~~---g~Divv~S~tK~~~G~~~~laG~~v~~~~-~~~--------  220 (390)
T PRK08064        158 RGVVKLAKAIGCLTFVDNTFLTPLLQ----KPL-DL---GADVVLHSATKFLAGHSDVLAGLAVVKDE-ELA--------  220 (390)
T ss_pred             HHHHHHHHHcCCEEEEECCCCccccc----Cch-hh---CCcEEEeecceeccCCccceeEEEEeCCH-HHH--------
Confidence            36899999999999999999864321    122 12   234789999998754 5567788777652 233        


Q ss_pred             hhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047983           80 HSISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC  140 (233)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  140 (233)
                            .+++.... ++...+++...+  .  ...-+.+..+.+...+++..+.+.|++.+.
T Consensus       221 ------~~l~~~~~~~g~~~~~~~a~l--~--~~gl~tl~~R~~~~~~~a~~la~~L~~~~~  272 (390)
T PRK08064        221 ------QKLYFLQNSFGAVLGVQDCWL--V--LRGLKTLHVRLEHSSETANKIALYLQEHPK  272 (390)
T ss_pred             ------HHHHHHHHhcCCCCCHHHHHH--H--HcccCcHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                  33333222 333333332222  1  123344666777778888888888887653

>PRK09028 cystathionine beta-lyase; Provisional

Probab=98.55  E-value=5e-06  Score=73.17  Aligned_cols=113  Identities=12%  Similarity=0.098  Sum_probs=71.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCcccc-CCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+|++|....    ...|+ .++.   -|++.|.+|.+ |..+...|+++.++  .+.        
T Consensus       166 ~~I~~la~~~g~~lvvD~t~a~p~----~~~Pl-~~Ga---Divv~S~tK~l~Gh~d~~~G~~~~~~--~~~--------  227 (394)
T PRK09028        166 PTLSRIAHEHDIVVMLDNTWASPI----NSRPF-EMGV---DISIQAATKYIVGHSDVMLGTATANE--KHW--------  227 (394)
T ss_pred             HHHHHHHHHcCCEEEEECCccccc----cCCcc-ccCc---eEEEEeCCeEecCCCCEEEEEEECCH--HHH--------
Confidence            378999999999999999998622    11122 2333   39999999988 45577788776544  222        


Q ss_pred             hhhhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           80 HSISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        80 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                            .++.... ..+...++.    .+++-...-+.+.-+.++-.++...+.+.|++.|.+
T Consensus       228 ------~~l~~~~~~~G~~~~p~----~a~l~~rgl~TL~lR~~~~~~na~~la~~L~~~p~v  280 (394)
T PRK09028        228 ------DQLREHSYLMGQCTSPD----DVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEV  280 (394)
T ss_pred             ------HHHHHHHHhcCCCCCHH----HHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                  2232221 222222332    222222334556777788889999999999886543

>PRK07671 cystathionine beta-lyase; Provisional

Probab=98.54  E-value=7.6e-06  Score=71.73  Aligned_cols=114  Identities=14%  Similarity=0.141  Sum_probs=68.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|+++|+++|+|++|....+..    ++ ...   ..+++.|+||.++.++ .-.|++++.++ .+.        
T Consensus       154 ~~I~~la~~~g~~lvvD~a~~~~~~~~----p~-~~g---~Divv~S~sK~l~G~~~~~~G~~v~~~~-~l~--------  216 (377)
T PRK07671        154 KKISTIAKEKGLLTIVDNTFMTPYWQS----PI-SLG---ADIVLHSATKYLGGHSDVVAGLVVVNSP-ELA--------  216 (377)
T ss_pred             HHHHHHHHHcCCEEEEECCCCccccCC----hh-hhC---CeEEEecCcccccCCccceeEEEEeCcH-HHH--------
Confidence            378999999999999999998633221    22 122   2389999999987654 45577777552 233        


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC  140 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  140 (233)
                            .+++.......+..++..  +.++. ..-+.+..+.+...++...+.+.|++.+.
T Consensus       217 ------~~~~~~~~~~g~~~~~~~--a~l~~-~~l~tl~~R~~~~~~na~~la~~L~~~~~  268 (377)
T PRK07671        217 ------EDLHFVQNSTGGILGPQD--SWLLL-RGLKTLGIRMEEHETNSRAIAEFLNNHPA  268 (377)
T ss_pred             ------HHHHHHHHhhcCCCCHHH--HHHHH-cCcChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence                  333322222112222211  11111 12334566777888999999999987654

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=98.52  E-value=5e-06  Score=72.14  Aligned_cols=190  Identities=15%  Similarity=0.051  Sum_probs=112.9

Q ss_pred             HHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhhhhh
Q 047983            5 ETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISL   84 (233)
Q Consensus         5 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      ++++.+++.+++|-+-+-    +..+..+..   ++  +++.|--|.+|.||  +|.+++++  ..++++.-. ..+.  
T Consensus       149 ~l~~~~~~l~iVDavss~----g~~~id~~~---~d--~~~~ssqK~lgP~G--lg~l~~s~--~~~~~~~~~-~~~~--  212 (349)
T TIGR01364       149 ELPDVKNAPLVADMSSNI----LSRPIDVSK---FG--LIYAGAQKNIGPAG--LTVVIVRK--DLLGRASRI-TPSM--  212 (349)
T ss_pred             eecccCCCeEEEEccccc----cCccCCHHH---cc--EEEEecccccCCCc--eEEEEECH--HHHhhcccC-CCCc--
Confidence            466778999999998876    333333332   33  88999999999888  78888887  344321100 0000  


Q ss_pred             HHhhhhhh--hhcc-CcchHH-HHHHHHhhhcHHH-HHHHHHHHHHHHHHHHHHHhhcCCCcccccC-C--CccEEEEEe
Q 047983           85 NMRMDDYL--LLSE-SVYTTV-GAVPQILEKTEEE-FFSKITDILREAADICCDRLKEIPCITCPKK-P--EGSMFVMYC  156 (233)
Q Consensus        85 ~~~~~~~~--~~~~-~~~~~~-~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~--~~g~~~~~~  156 (233)
                       .......  .... .++... .++.+.++.-.++ -++++.++.++..+++++.|++++++..+.. |  .++....  
T Consensus       213 -~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~s--  289 (349)
T TIGR01364       213 -LNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVV--  289 (349)
T ss_pred             -chHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEE--
Confidence             0011001  1111 222322 4554444322233 3788899999999999999999865532211 1  1222222  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~  228 (233)
                             +.++  .   .. ........+.++|+.+.+|..  ..+.+|+|+..  +.++++..++.|++++++
T Consensus       290 -------f~~~--~---~~-~~~~~~~~~~~~Gi~~~~~~~--~~g~vRvS~~~~nt~edid~l~~al~~~~~~  348 (349)
T TIGR01364       290 -------FTLG--N---EE-LEKRFLKEAEERGLVSLKGHR--SVGGMRASIYNAMPLEGVQALVDFMKEFQKK  348 (349)
T ss_pred             -------EecC--C---hh-HhHHHHHHHHHCCCcccCCcc--ccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence                   2222  1   10 124444567789998877765  23689999986  799999999999887654

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=98.51  E-value=8.5e-06  Score=71.41  Aligned_cols=112  Identities=13%  Similarity=0.141  Sum_probs=68.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC-CCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+|++|..-....    ++ .+   .--++++|++|.++. ++...|++++++  +..        
T Consensus       155 ~~I~~la~~~g~~livD~t~a~g~~~~----pl-~~---gaDivv~S~tK~l~G~~d~~gG~v~~~~--~~~--------  216 (377)
T TIGR01324       155 PAIAKAARNPGIVIMIDNTWAAGLLFK----PL-EH---GVDISIQAGTKYLVGHSDIMIGTVVANA--RTW--------  216 (377)
T ss_pred             HHHHHHHHHcCCEEEEECCCccccccC----cc-cc---CceEEEecCceeccCCCCceEEEEEeCH--HHH--------
Confidence            378999999999999999998633211    22 12   233899999999865 457889988876  232        


Q ss_pred             hhhhhHHhhhhh-hhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047983           80 HSISLNMRMDDY-LLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC  140 (233)
Q Consensus        80 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  140 (233)
                            .++... ...+...++. .+...   ...-+.+..+.++..++...+.+.|++.|.
T Consensus       217 ------~~l~~~~~~~G~~l~p~-~a~~~---~rgl~tl~~R~~~~~~~a~~la~~L~~~p~  268 (377)
T TIGR01324       217 ------DQLREHSYLMGQMVDAD-DAYTT---LRGLRTLGVRLKQHQESSLAIAKWLSEQPE  268 (377)
T ss_pred             ------HHHHHHHHHhCCCCCHH-HHHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                  222211 1223222332 21111   123345556677777887788888877543

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.51  E-value=7.3e-06  Score=73.06  Aligned_cols=58  Identities=16%  Similarity=0.185  Sum_probs=44.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecC
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD   66 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~   66 (233)
                      ++|+++|+++|+++|+|++|..    +....++    .....+++.|++|.++++|.++|++++..
T Consensus       169 ~~I~~la~~~gi~vIvD~t~a~----~~~~~pl----~~gaDivv~S~tK~lgg~g~~~Gg~v~~~  226 (431)
T PRK08248        169 EAVAAIAHEHGIPLIVDNTFAS----PYLLRPI----EHGADIVVHSATKFIGGHGTSIGGVIVDS  226 (431)
T ss_pred             HHHHHHHHHcCCEEEEeCCCCc----cccCChh----HcCCCEEEEcCccccCCCCCceEEEEEeC
Confidence            3789999999999999999863    1112222    12344889999999999999999988854

>PRK07050 cystathionine beta-lyase; Provisional

Probab=98.50  E-value=4.3e-06  Score=73.68  Aligned_cols=113  Identities=13%  Similarity=0.094  Sum_probs=65.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccC-CCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWI-VPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+|++|....+.    .++. .   ...+++.|+||.++ ..+.+.|++++.++ ++.        
T Consensus       170 ~~I~~ia~~~gi~livD~a~a~~~~~----~~l~-~---GaDi~v~S~tK~~~g~~~~~gG~v~~~~~-~~~--------  232 (394)
T PRK07050        170 PAITAAARARGVVTAIDNTYSAGLAF----KPFE-H---GVDISVQALTKYQSGGSDVLMGATITADA-ELH--------  232 (394)
T ss_pred             HHHHHHHHHcCCEEEEECCccccccc----CHHH-c---CCeEEEEECCceecCCCCeeEEEEEECCH-HHH--------
Confidence            36899999999999999999863321    1111 1   22488999999875 46678899888663 233        


Q ss_pred             hhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047983           80 HSISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC  140 (233)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  140 (233)
                            .+++.... .+.+.++. .+  .+. ...-+.+..+.++..++...+.+.|++.+.
T Consensus       233 ------~~~~~~~~~~G~~~~~~-~a--~l~-lr~l~tl~~Rl~~~~~~a~~la~~L~~~p~  284 (394)
T PRK07050        233 ------AKLKLARMRLGIGVSAD-DC--SLV-LRGLPSLQVRLAAHDRSALEVAEWLKARPE  284 (394)
T ss_pred             ------HHHHHHHHhcCCCCCHH-HH--HHH-HcCCCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                  33332222 22222222 11  111 111123344556666666677787776543

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=98.49  E-value=7e-06  Score=72.04  Aligned_cols=58  Identities=19%  Similarity=0.282  Sum_probs=41.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecC
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSD   66 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~   66 (233)
                      ++|+++|+++|+++|+|++|....+..    ++ .+..+   +++.|++|.++.+| .-.|++++.+
T Consensus       154 ~~I~~la~~~gi~vivD~t~a~~~~~~----p~-~~gaD---ivv~S~tK~l~g~~d~~gG~vv~~~  212 (380)
T PRK06176        154 AQCASVAKDHGLLTIVDNTFATPYYQN----PL-LLGAD---IVVHSGTKYLGGHSDVVAGLVTTNN  212 (380)
T ss_pred             HHHHHHHHHcCCEEEEECCccccccCC----cc-ccCCC---EEEecCceeccCCccceeeEEEecH
Confidence            378999999999999999998643321    22 22332   88999999987766 4456666654

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=98.48  E-value=4.5e-06  Score=73.10  Aligned_cols=178  Identities=20%  Similarity=0.207  Sum_probs=105.4

Q ss_pred             hHHHHHHHcCcEEEEccccC-ccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCC-------Cccccc
Q 047983            2 CIEETTKKLGIMVIADEVYG-HLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP-------NGILQD   73 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~-------~~~~~~   73 (233)
                      ++.++|++.|.+|+.|-+|. .++-+|..+.|+..  .+   |+.+|..|+|  +|-|-|.|.+...       ....++
T Consensus       188 ~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~--AD---vvt~sThKtl--~GPrggiI~~~~~~~~~~~~~~~~~~  260 (399)
T PF00464_consen  188 RFREIADEVGAYLMADISHIAGLIAGGLFPNPFPY--AD---VVTGSTHKTL--RGPRGGIILTNKGSKNVDKKGKEIDE  260 (399)
T ss_dssp             HHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCT--SS---EEEEESSGGG---SSS-EEEEES-SEEEE-TTS-EEEH
T ss_pred             HHHHHHHhcCcEEEecccccccceehheecCcccc--ce---EEEeeccccc--cccCceEEEEcCCccccCCcccccHH
Confidence            68899999999999999998 66667766666643  22   8899999975  5667788888711       000011


Q ss_pred             cchhhhhhhhhHHhhhhhhhhcc--CcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcc
Q 047983           74 LGVAFFHSISLNMRMDDYLLLSE--SVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGS  150 (233)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g  150 (233)
                       ++.        .++......+.  ++.... ++++..+........++..+.+-+|.+.|.+.|.+. ++.........
T Consensus       261 -~l~--------~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~v~~ggTd~  330 (399)
T PF00464_consen  261 -ELA--------EKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQER-GFKVVTGGTDN  330 (399)
T ss_dssp             -HHH--------HHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-T-EEGGGS-SS
T ss_pred             -HHH--------HHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhC-CcEEEECCCCC
Confidence             233        55555433221  122211 555554443334456888899999999999999886 44433333445


Q ss_pred             EEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEE----CCcccC-CCCcEEEEeec
Q 047983          151 MFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVL----PGITVG-LKDWLRITFAV  210 (233)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~-~~~~~Rl~~~~  210 (233)
                      -.+|           +++... ++  +...+.+.|++.||.+.    |+..-. ..+.+||....
T Consensus       331 H~vl-----------vd~~~~-~~--~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~  381 (399)
T PF00464_consen  331 HQVL-----------VDLRSF-GI--DGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPA  381 (399)
T ss_dssp             SEEE-----------EEGGGG-TS---HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHH
T ss_pred             CeEE-----------EEeccc-cc--chHHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHH
Confidence            6666           454331 22  56778889999999985    333101 14679998763

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.48  E-value=3.5e-06  Score=72.51  Aligned_cols=193  Identities=14%  Similarity=0.086  Sum_probs=110.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCc-cccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTH-FVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      .|..+|+++++++|.||+...|...+.. ...+..+.++     |.++.|. ...|+++|...+.+  .+.+.+.     
T Consensus       231 ~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PD-----I~t~aK~-L~gGlPigA~~v~~--kV~~~i~-----  297 (433)
T KOG1401|consen  231 GLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPD-----ITTVAKP-LGGGLPIGATGVRD--KVAEMIS-----  297 (433)
T ss_pred             HHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCc-----ceeehhh-ccCCceeEEEeehH--HHHhhcC-----
Confidence            4789999999999999999998776642 2333334443     7799998 55689999999988  3432110     


Q ss_pred             hhhhHHhhhhhhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           81 SISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                         +.+.+.+  ..+.+.++.+  ++...+-.-...++.++..+.-+.-++.+.+.+.+-+.... ..-..++++-    
T Consensus       298 ---~~~~l~h--g~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~~~~~i~-g~~grgl~ig----  367 (433)
T KOG1401|consen  298 ---PGDHLYH--GGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDEYLKKTPNSIC-GGVGRGLVIG----  367 (433)
T ss_pred             ---CCCcccc--CcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccCCCcee-eeeeeEEEEE----
Confidence               0011111  2233445554  33333311124567777777777778888888877433221 1122234443    


Q ss_pred             CCccccc--ccccccCCC-CChHHHH---HHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          159 EDKCLLK--LNYSLLEGI-NSDTEFA---LKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       159 ~~~~~~~--~~~~~~~~~-~~~~~~~---~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                           +.  .+....-.. -....+.   .+.+.+.|+.++|       -|+ +++..++|.++.+++.+.+++.+..
T Consensus       368 -----~~~~~p~~~~~d~~~~~~ll~~~~~~~~~~~gv~i~P-------~~~-l~~~~~~E~i~~~l~i~~~~l~~~~  432 (433)
T KOG1401|consen  368 -----FEFEGPVYKFADAAREQGLLILTLGKGLLEEGVRIAP-------IYL-LTVEHTPEVIQRLLTILEKVLSALN  432 (433)
T ss_pred             -----EEEeechhhhhhhhhhhhHHHHHHhcccccceEEEec-------ccc-ccccCcHHHHHHHHHHHHHHHHHhc
Confidence                 21  222211000 0011222   2223345778777       222 5555578899999999999988754

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=98.46  E-value=1.2e-05  Score=70.50  Aligned_cols=63  Identities=21%  Similarity=0.199  Sum_probs=42.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCc-cccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCcccc
Q 047983            1 FCIEETTKKLGIMVIADEVYGH-LVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQ   72 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~   72 (233)
                      ++|.++|++||++||+|++|+. ..+.+..   +   +....  .+.||++...+++.+.|+++++++ ++.+
T Consensus       138 ~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~---~---g~~g~--~~~Sf~~~K~l~~g~GG~v~~~~~-~~~~  201 (379)
T PRK11658        138 DAIRAIGERYGIPVIEDAAHAVGTYYKGRH---I---GARGT--AIFSFHAIKNITCAEGGLVVTDDD-ELAD  201 (379)
T ss_pred             HHHHHHHHHcCCeEEEECCCccCCeECCee---c---CCCCC--EEEeCCCCCcCcccCceEEEECCH-HHHH
Confidence            3689999999999999999984 3333321   1   22121  356666655667778899888753 4443

>PLN02590 probable tyrosine decarboxylase

Probab=98.46  E-value=1.1e-05  Score=73.54  Aligned_cols=218  Identities=11%  Similarity=0.040  Sum_probs=120.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcccc-ccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVP-MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+|+-+|-+|+.+..-.++... +..+..-+  =+..+..|. +....-+|.+..++...+.+.+..   
T Consensus       307 ~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~AD--Sit~D~HK~-l~~p~~cg~llvr~~~~l~~a~~~---  380 (539)
T PLN02590        307 VPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENAD--SFNMNAHKW-LFANQTCSPLWVKDRYSLIDALKT---  380 (539)
T ss_pred             HHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCC--EEEECchhh-cCcCcCEEEEEecCHHHHHHHhhc---
Confidence            47999999999999999999987643322211 22222111  234578997 778889999998875323211000   


Q ss_pred             hhhhhHH------hhhhhhhhccCcchHHHHHH--HHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccE
Q 047983           80 HSISLNM------RMDDYLLLSESVYTTVGAVP--QILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSM  151 (233)
Q Consensus        80 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~  151 (233)
                      +..-+..      ....+..++...+....++.  ..+...+.+-++++.+..-+..+++.+.|++.+++....+|+-+.
T Consensus       381 ~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~i  460 (539)
T PLN02590        381 NPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSL  460 (539)
T ss_pred             CHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEE
Confidence            0000000      00001111111111112222  223333556677788888888999999998887777655555444


Q ss_pred             EEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec---CHHHHHHHHHHHHHHHHH
Q 047983          152 FVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV---EPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~---~~~~l~~~~~~l~~~l~~  228 (233)
                      .+|   +-.+..  .+......  -..+...++. +.|...+......+..++|+|+..   ++++++.+++.|.+...+
T Consensus       461 VcF---r~~~~~--~~~~~~~~--ln~~l~~~l~-~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~  532 (539)
T PLN02590        461 VCF---RLAPVD--GDEDQCNE--RNRELLAAVN-STGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASK  532 (539)
T ss_pred             EEE---EecCCC--CCHHHHHH--HHHHHHHHHH-hCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence            443   211100  00000000  0223344444 455555554555556789999985   699999999999988777


Q ss_pred             Hhhc
Q 047983          229 HAKK  232 (233)
Q Consensus       229 ~~~~  232 (233)
                      +.++
T Consensus       533 ~~~~  536 (539)
T PLN02590        533 FTRN  536 (539)
T ss_pred             hccc
Confidence            6543

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=98.44  E-value=1.3e-05  Score=69.92  Aligned_cols=198  Identities=13%  Similarity=0.062  Sum_probs=109.2

Q ss_pred             HHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh-h-
Q 047983            4 EETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH-S-   81 (233)
Q Consensus         4 ~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~-~-   81 (233)
                      .++++++|+++|+|-+-+-    +..+..+..     --+++.|--|.++.+|- ++.++.++  ..++++.-.... . 
T Consensus       148 ~~I~~~~g~~~iVDavqs~----g~~~idv~~-----~D~~~~s~~K~lg~~~G-l~~~~~s~--~~~~~~~~~~~~~~~  215 (361)
T TIGR01366       148 RRPEGSDDALVVIDATSGA----GGLPVDIAE-----TDVYYFAPQKNFASDGG-LWLAIMSP--AALERIEAIAASGRW  215 (361)
T ss_pred             ccccccCCCeEEEEcCccc----cCCCCCHHH-----CCEEEEEchhhcCCCCc-eEEEEECH--HHHhhhhcccCCCCC
Confidence            3457889999999999886    333333332     12688999999998853 55555565  343321100000 0 


Q ss_pred             ----hhhHHhhhhhh-hhccCcchHH--HHHHHHhhhcHHH-HHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC---cc
Q 047983           82 ----ISLNMRMDDYL-LLSESVYTTV--GAVPQILEKTEEE-FFSKITDILREAADICCDRLKEIPCITCPKKPE---GS  150 (233)
Q Consensus        82 ----~~~~~~~~~~~-~~~~~~~~~~--~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~g  150 (233)
                          .++-....... ..+.++++..  .++.+.++.-.+. -++...++.++..+++++.+++++.+..+....   ..
T Consensus       216 ~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~  295 (361)
T TIGR01366       216 VPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQ  295 (361)
T ss_pred             CchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhccc
Confidence                00000000000 0112222222  3444433221122 156667888899999999998876543322211   11


Q ss_pred             EEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHH
Q 047983          151 MFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~  228 (233)
                      ....         +.++ .   +.  +.+.+...|+++||.+.++..--....+|+++..  +.++++.+++.|.+++++
T Consensus       296 ~v~~---------v~~~-~---g~--~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~  360 (361)
T TIGR01366       296 VVGT---------IDFV-D---DI--DAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVER  360 (361)
T ss_pred             ceEE---------EECC-C---cc--CHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence            1122         2232 1   22  4455555567789999876422225689999996  899999999999987765

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.43  E-value=6.9e-06  Score=73.06  Aligned_cols=58  Identities=16%  Similarity=0.167  Sum_probs=41.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCcc-----ccCCCCceE-----EEEEecC
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISK-----RWIVPGWRL-----GWLVTSD   66 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-----~~~~~G~R~-----G~~~~~~   66 (233)
                      ++|+++|+++|+++|+|++|..    + -.......+.+   |++.|+||     ...++|.++     +|..+++
T Consensus       167 ~~I~~iA~~~gi~livD~T~~t----P-~~~~pl~~GAD---Ivv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~  234 (432)
T PRK06702        167 KEFSDAAKELEVPFIVDNTLAT----P-YLCQAFEHGAN---IIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKY  234 (432)
T ss_pred             HHHHHHHHHcCCEEEEECCCCc----h-hhCChhhcCCC---EEEEccccccCCCcceeceEEEeCCCcccccccc
Confidence            4789999999999999999852    1 11111222332   99999999     777788887     6776544

>PRK05967 cystathionine beta-lyase; Provisional

Probab=98.41  E-value=2.1e-05  Score=69.29  Aligned_cols=113  Identities=14%  Similarity=0.111  Sum_probs=69.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccC-CCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWI-VPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+|++|....+-    .|+. ++.+   |++.|.+|..+ ..+...|+++.++  ...        
T Consensus       169 ~~I~~la~~~g~~vvVD~t~a~p~~~----~pl~-~GaD---ivv~S~tKy~~Gh~d~~~G~v~~~~--~~~--------  230 (395)
T PRK05967        169 PAIAEAAHRHGAIVMMDNTWATPLYF----RPLD-FGVD---ISIHAATKYPSGHSDILLGTVSANE--KCW--------  230 (395)
T ss_pred             HHHHHHHHHhCCEEEEECCccCceec----ChhH-cCCC---EEEEecccccCCCCCeeEEEEEcCH--HHH--------
Confidence            47899999999999999999863322    1222 3333   99999999864 4778889777654  222        


Q ss_pred             hhhhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           80 HSISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        80 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                            .++.... ..+...++.    .+++-..+-+.+.-+.++..++...+.+.|++.|.+
T Consensus       231 ------~~l~~~~~~~G~~~~p~----da~l~~rgl~Tl~lR~~~~~~na~~lA~~L~~hp~v  283 (395)
T PRK05967        231 ------PQLLEAHGTLGLCAGPD----DTYQILRGLRTMGIRLEHHRKSALEIARWLEGRPDV  283 (395)
T ss_pred             ------HHHHHHHHHcCCCCCHH----HHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence                  2222211 222222222    222222344556666677788888888888876543

>PLN02509 cystathionine beta-lyase

Probab=98.41  E-value=3.5e-05  Score=69.25  Aligned_cols=115  Identities=15%  Similarity=0.057  Sum_probs=67.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++|+|++|.......    ++ ....   -+++.|++|.++.+| .=.|.+++.++ .+.        
T Consensus       237 ~~I~~lAk~~g~~lIVD~A~a~~~~~~----pl-~~ga---Divv~S~tK~l~G~gdv~gG~v~~~~~-~l~--------  299 (464)
T PLN02509        237 RKIAEMAHAQGALVLVDNSIMSPVLSR----PL-ELGA---DIVMHSATKFIAGHSDVMAGVLAVKGE-KLA--------  299 (464)
T ss_pred             HHHHHHHHHcCCEEEEECCccccccCC----hh-hcCC---cEEEecCcccccCCCccceeEEEeccH-HHH--------
Confidence            378999999999999999987543221    12 1222   388999999877643 34577776552 222        


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                            .++...........++..  +.++ ...-+.+..+.++..++++.+.+.|++.|.+
T Consensus       300 ------~~~~~~~~~~g~~l~p~~--A~l~-lr~L~tL~~R~~r~~~nA~~la~~L~~~p~V  352 (464)
T PLN02509        300 ------KEVYFLQNSEGSGLAPFD--CWLC-LRGIKTMALRIEKQQENARKIAMYLSSHPRV  352 (464)
T ss_pred             ------HHHHHHHHhcCCCcCHHH--HHHH-HhhhhhHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                  222211111111122211  1121 1233566777888889999999999876543

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=98.40  E-value=2.2e-05  Score=68.77  Aligned_cols=203  Identities=14%  Similarity=-0.003  Sum_probs=109.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC-CCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|++  +++|+++|+|-+.+-    |..+..+..+     -+++.|.-|.++. +|  +|++..++  +.++++.-....
T Consensus       157 ~I~~--~~~g~~~vVDa~qs~----G~~pidv~~i-----D~~~~s~~K~l~~P~G--~g~l~v~~--~~~~~~~p~~~~  221 (378)
T PRK03080        157 RWIG--ADREGLTICDATSAA----FALPLDWSKL-----DVYTFSWQKVLGGEGG--HGMAILSP--RAVERLESYTPA  221 (378)
T ss_pred             hhcc--ccCCCeEEEeccccc----ccCCCCHHHC-----cEEEEehhhhCCCCCc--eEEEEECH--HHHHhhhcccCC
Confidence            3444  567999999988776    2333333321     2889999998754 67  78888887  344321110000


Q ss_pred             hh-----hhHH---hhhh-hhhhccCcchHH--HHHHHHhhhcHHH-HHHHHHHHHHHHHHHHHHHhhcCCCcccccC-C
Q 047983           81 SI-----SLNM---RMDD-YLLLSESVYTTV--GAVPQILEKTEEE-FFSKITDILREAADICCDRLKEIPCITCPKK-P  147 (233)
Q Consensus        81 ~~-----~~~~---~~~~-~~~~~~~~~~~~--~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~  147 (233)
                      ..     ++..   .... +...+.++++..  .++.+.++.-.+. -++++.++.++..+++++.|++++++..+.. +
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~  301 (378)
T PRK03080        222 RPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADP  301 (378)
T ss_pred             CCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCc
Confidence            00     0000   0010 001111222221  2222222211122 2567778888888999999988765433211 1


Q ss_pred             --CccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHH
Q 047983          148 --EGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMK  223 (233)
Q Consensus       148 --~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~  223 (233)
                        .++..+.         +.++... ++  .+.+.+.+++ ++|+.+..|..-...+.+|+|+..  +.++++.+++.|+
T Consensus       302 ~~~s~~i~~---------~~~~~~~-~~--~~~~~~~~l~-~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~  368 (378)
T PRK03080        302 ATRSNTSVT---------LDFVDAQ-AA--VDAAAVAKLL-RENGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLD  368 (378)
T ss_pred             cccCccEEE---------EEcCCch-HH--HHHHHHHHHH-HcCCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHH
Confidence              1222222         2232100 00  1344555555 458888775422125789999885  8999999999999


Q ss_pred             HHHHHHhhc
Q 047983          224 AFYYRHAKK  232 (233)
Q Consensus       224 ~~l~~~~~~  232 (233)
                      +++++.+..
T Consensus       369 ~~~~~~~~~  377 (378)
T PRK03080        369 WAFERLKAA  377 (378)
T ss_pred             HHHHHHhhc
Confidence            998877653

>PLN02271 serine hydroxymethyltransferase

Probab=98.39  E-value=3.2e-05  Score=70.12  Aligned_cols=202  Identities=12%  Similarity=0.075  Sum_probs=118.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccC-CCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCcccccc-chhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFG-NTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDL-GVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~-~~~~~   79 (233)
                      +|.++|+++|+++++|-++..-... +..+.|+..  .   -|+.+|..|++  .|-|-|.+...+.  +.... ...-.
T Consensus       317 ~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~--a---Dvvt~TTHKtL--rGPrGG~I~~r~~--~~~~~~g~~gs  387 (586)
T PLN02271        317 RFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDY--C---DIVTSTTHKSL--RGPRGGIIFYRKG--PKLRKQGMLLS  387 (586)
T ss_pred             HHHHHHHHcCCEEEEECcccccccccCcCCCCCcC--C---cEEEeCCcccC--CCCCceEEEeccc--ccccccCCccc
Confidence            6889999999999999999953333 323333431  2   28899999976  3444488887652  11000 00000


Q ss_pred             hhh-----hhHHhhhhhhh--hccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccE
Q 047983           80 HSI-----SLNMRMDDYLL--LSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSM  151 (233)
Q Consensus        80 ~~~-----~~~~~~~~~~~--~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~  151 (233)
                      ++.     ....++.....  +-.++.... ++++..++.-....+++..+.+.+|.+.|.+.|.+. ++.........-
T Consensus       388 ~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~-G~~vv~ggTdnH  466 (586)
T PLN02271        388 HGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRR-KCRLVTGGTDNH  466 (586)
T ss_pred             cccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC-CCeEeeCCCCcc
Confidence            000     00023322211  112222222 555555543333344788899999999999999775 443323333455


Q ss_pred             EEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-----CCcEEEEee------cCHHHHHHHHH
Q 047983          152 FVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-----KDWLRITFA------VEPSAFEIGLG  220 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----~~~~Rl~~~------~~~~~l~~~~~  220 (233)
                      .++           +++... ++  +...+.+.|++.||.+..-...+.     .+.+||...      ..++++++..+
T Consensus       467 lvL-----------vDl~~~-g~--~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~  532 (586)
T PLN02271        467 LLL-----------WDLTTL-GL--TGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIAD  532 (586)
T ss_pred             eee-----------ecCccc-CC--CHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHH
Confidence            566           555432 33  668888999999999854222221     577999654      25678888877


Q ss_pred             HHHHHHH
Q 047983          221 RMKAFYY  227 (233)
Q Consensus       221 ~l~~~l~  227 (233)
                      .|.++++
T Consensus       533 ~i~~~~~  539 (586)
T PLN02271        533 FLLRAAQ  539 (586)
T ss_pred             HHHHHHh
Confidence            7777765

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=98.38  E-value=4.6e-06  Score=73.37  Aligned_cols=65  Identities=22%  Similarity=0.176  Sum_probs=42.9

Q ss_pred             ChHHHHHHHcCcEEEEccccC-ccccCCCccccccccCC----ccCEEEEccCccccCCCCceEEEEEecCC
Q 047983            1 FCIEETTKKLGIMVIADEVYG-HLVFGNTHFVPMGVFGS----IVPVLTLGSISKRWIVPGWRLGWLVTSDP   67 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~----~~~~i~~~s~sK~~~~~G~R~G~~~~~~~   67 (233)
                      ++|+++|.++++.|++||+|+ ++.|. +-+.+...++.    +..++++.|..|+ ..+=...+++...+.
T Consensus       187 ~~I~~~~h~~~~~llvDEAhGah~~F~-~lp~~a~~~gad~~~~~~~~vvqS~HKt-L~altQts~lh~~~~  256 (417)
T PF01276_consen  187 KEIAEICHKHGIPLLVDEAHGAHFGFH-PLPRSALALGADRPNDPGIIVVQSTHKT-LPALTQTSMLHVKGD  256 (417)
T ss_dssp             HHHHHHHCCTECEEEEE-TT-TTGGCS-GGGTTCSSTTSS-CTSBEEEEEEEHHHH-SSS-TT-EEEEEETC
T ss_pred             HHHHHHhcccCCEEEEEccccccccCC-CCccchhhccCccccccceeeeechhhc-ccccccceEEEecCC
Confidence            368999999999999999999 44444 22223333322    2458999999998 555556678888773

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.38  E-value=3.2e-05  Score=66.54  Aligned_cols=190  Identities=16%  Similarity=0.140  Sum_probs=123.9

Q ss_pred             hHHHHHHHcCcEEEEccccC-ccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYG-HLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++.++|.+.|.+|++|-+|- .++-+|..+.|+..  .+   |+.+|..|++  +|-|-|.|.+.++       ++.   
T Consensus       185 ~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~--Ad---vVTtTTHKTl--rGPrGG~Il~~~e-------el~---  247 (413)
T COG0112         185 RFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH--AD---VVTTTTHKTL--RGPRGGIILTNDE-------ELA---  247 (413)
T ss_pred             HHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCc--cc---eEeCCcccCC--CCCCceEEEeccH-------HHH---
Confidence            67899999999999999998 66666666666643  22   8899999976  4556677777652       334   


Q ss_pred             hhhhHHhhhhhhhhccCcchHH---HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVYTTV---GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                           .++......+.-..+..   ++.+-.++...+..+++..+.+.+|.+.|.+.|.+. ++.........-.+.   
T Consensus       248 -----kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~vvsGgTdnHl~l---  318 (413)
T COG0112         248 -----KKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER-GFKVVSGGTDNHLVL---  318 (413)
T ss_pred             -----HHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc-CCeEecCCccceEEE---
Confidence                 55555444322222222   444444444444566788888999999999999885 443322222233333   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEEC-CcccC---C--CCcEEEEee------cCHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLP-GITVG---L--KDWLRITFA------VEPSAFEIGLGRMKAF  225 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~---~--~~~~Rl~~~------~~~~~l~~~~~~l~~~  225 (233)
                              +++... ++  +-+.+...|.+.||.+.- +-.|.   +  ++.+||...      ..++++++..+.|.++
T Consensus       319 --------VDl~~~-~~--~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~v  387 (413)
T COG0112         319 --------VDLRSK-GL--TGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADV  387 (413)
T ss_pred             --------EEcccC-CC--CHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHH
Confidence                    455421 33  678888999999999954 22332   2  578999554      2577888888888887


Q ss_pred             HHH
Q 047983          226 YYR  228 (233)
Q Consensus       226 l~~  228 (233)
                      +..
T Consensus       388 l~~  390 (413)
T COG0112         388 LDG  390 (413)
T ss_pred             Hhc
Confidence            765

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=98.35  E-value=9.1e-07  Score=74.51  Aligned_cols=186  Identities=19%  Similarity=0.144  Sum_probs=122.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCC--cccccccc-CCccCEEEEccCccccCCCCceEEE--EEecCCCccccccc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNT--HFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGW--LVTSDPNGILQDLG   75 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~--~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~R~G~--~~~~~~~~~~~~~~   75 (233)
                      ++|.++.++.+...+.|-+|..|.-++.  ....+..+ ....+++.+-|++|..|+.|-|+|.  +++.+. +.-.  .
T Consensus       221 ~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~svvc~~a-d~A~--r  297 (427)
T KOG1411|consen  221 EKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGALSVVCKDA-DEAK--R  297 (427)
T ss_pred             HHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhccceeEEEecCH-HHHH--H
Confidence            4688899999999999999999987652  22222222 3446799999999999999999999  466553 1111  1


Q ss_pred             hhhhhhhhhHHhhhhhhh-h-ccCcchHHHHHHHHhhhc-----HHHHHHHHHHHHHHHHHHHHHHhhcC--C-Cccccc
Q 047983           76 VAFFHSISLNMRMDDYLL-L-SESVYTTVGAVPQILEKT-----EEEFFSKITDILREAADICCDRLKEI--P-CITCPK  145 (233)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~--~-~~~~~~  145 (233)
                      +-        .+++.... + +.+|...+..++.++++.     +-..++.+.+++...|+.|.+.|+.-  + .|. +.
T Consensus       298 V~--------SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~~gs~~~W~-hI  368 (427)
T KOG1411|consen  298 VE--------SQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALEKEGSPGNWS-HI  368 (427)
T ss_pred             HH--------HHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhcCCCCccHH-HH
Confidence            11        22222222 1 323333336666666554     23456667888999999999999773  2 333 24


Q ss_pred             CCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHHHH
Q 047983          146 KPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRMKA  224 (233)
Q Consensus       146 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l~~  224 (233)
                      .-+-|+|++           ..+        ..+.+..+.+++.|.++.-.        |||++. +..++....+.|.+
T Consensus       369 ~~QIGMF~f-----------Tgl--------~peQv~~l~ke~~iYmT~dG--------RiS~aG~ss~nV~yLa~aih~  421 (427)
T KOG1411|consen  369 TKQIGMFCF-----------TGL--------NPEQVDWLTKEYHIYLTKDG--------RISMAGLSSSNVPYLADAIHA  421 (427)
T ss_pred             HHhhheeee-----------cCC--------CHHHHHHHHhhheeeeccCc--------eEeeccccccCCcccchhhHh
Confidence            456799998           654        67888999999999998422        888885 55555555555544


Q ss_pred             H
Q 047983          225 F  225 (233)
Q Consensus       225 ~  225 (233)
                      +
T Consensus       422 v  422 (427)
T KOG1411|consen  422 V  422 (427)
T ss_pred             H
Confidence            3

>PLN02880 tyrosine decarboxylase

Probab=98.33  E-value=1.3e-05  Score=72.52  Aligned_cols=213  Identities=10%  Similarity=0.005  Sum_probs=116.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+|+.+|-+|+.+....+.. ..+..+..-|  -+..++.|. +....-+|.+..++...+.+.  +. .
T Consensus       259 ~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aD--Sit~d~HKw-l~~P~~~g~llvr~~~~l~~~--~~-~  332 (490)
T PLN02880        259 LELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEAD--SFNMNAHKW-FLTNFDCSLLWVKDRNALIQS--LS-T  332 (490)
T ss_pred             HHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcC--EEEECchhh-cCCCccEEEEEEeCHHHHHHH--Hc-c
Confidence            479999999999999999999875432221 1222222111  456789997 778889999998864222211  00 0


Q ss_pred             hhhhhHHhh------hhhhhhccCcchHHHHHHHH--hhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccE
Q 047983           80 HSISLNMRM------DDYLLLSESVYTTVGAVPQI--LEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSM  151 (233)
Q Consensus        80 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~  151 (233)
                      +..-+....      ..+..++........++.-+  +...+.+-+.+..+..-+.++++.+.|++.+++....+|+.++
T Consensus       333 ~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~i  412 (490)
T PLN02880        333 NPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSL  412 (490)
T ss_pred             CHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEE
Confidence            000000000      00000110000011233322  2223444555555555588888888888877777656666555


Q ss_pred             EEEEecCCCcccccccccccCCCC--C--hHHHHHHHHhccCEEEECCcccCCCCcEEEEeec---CHHHHHHHHHHHHH
Q 047983          152 FVMYCGSEDKCLLKLNYSLLEGIN--S--DTEFALKLAKEESIIVLPGITVGLKDWLRITFAV---EPSAFEIGLGRMKA  224 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~---~~~~l~~~~~~l~~  224 (233)
                      .++          +++.... ...  +  ......++.++..+.+. ...+.+..++|+|+..   ++++++.+++.|.+
T Consensus       413 v~F----------r~~~~~~-~~~~~~~~n~~l~~~l~~~g~~~v~-~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~  480 (490)
T PLN02880        413 VCF----------RLVPPKN-NEDNGNKLNHDLLDAVNSSGKIFIS-HTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQD  480 (490)
T ss_pred             EEE----------EEeCCCC-ChhhHHHHHHHHHHHHHhCCCEEEE-EEEECCEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence            443          2221100 000  0  12334444444444444 4555667899999985   57999999999988


Q ss_pred             HHHHHhh
Q 047983          225 FYYRHAK  231 (233)
Q Consensus       225 ~l~~~~~  231 (233)
                      ..+++..
T Consensus       481 ~~~~~~~  487 (490)
T PLN02880        481 EASKLLG  487 (490)
T ss_pred             HHHHHHH
Confidence            8777643

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=98.31  E-value=5.9e-05  Score=68.27  Aligned_cols=205  Identities=16%  Similarity=0.051  Sum_probs=109.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCC----CceEEEEEecCCCccccccch
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVP----GWRLGWLVTSDPNGILQDLGV   76 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~R~G~~~~~~~~~~~~~~~~   76 (233)
                      ++|+++|+++|+++++|.++..-..+ .  .+...++.   -++++|..|.++.|    |--+|++.+++  .+.+.|.-
T Consensus       228 ~eI~~~a~~~gal~iVD~a~~~~~~g-~--~~~~~~Ga---D~~~~~~hK~l~~P~g~Ggp~~G~l~~~~--~~~~~lp~  299 (481)
T PRK04366        228 LEIAEIVHEAGGLLYYDGANLNAILG-K--ARPGDMGF---DVVHLNLHKTFSTPHGGGGPGSGPVGVKE--ELAPFLPV  299 (481)
T ss_pred             HHHHHHHHHcCCEEEEEecChhhhcc-c--CCccccCC---CEEEEechhhcCCCCCCCCCCeeeeeehh--hhHhhCCC
Confidence            36889999999999999998532111 1  11222233   37888999987644    45578888876  34432210


Q ss_pred             hhhhhhhhH-----H-hhhhhhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC
Q 047983           77 AFFHSISLN-----M-RMDDYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE  148 (233)
Q Consensus        77 ~~~~~~~~~-----~-~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  148 (233)
                      . ....+..     . +-.+........++..  .+...++...+.+=+++..++..++.+++.+.|+++..+. +..|.
T Consensus       300 ~-~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~~~~~-~~~~~  377 (481)
T PRK04366        300 P-VVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDIYDLP-YDRPC  377 (481)
T ss_pred             C-eeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCccc-CCCCe
Confidence            0 0000000     0 0000000111111111  2222223233445566777777888899999998752322 11111


Q ss_pred             ccEEEEEecCCCccccccccc--ccCCCCChHHHHHHHHhccCEEEECCcccC--CCCcEEEEeec--CHHHHHHHHHHH
Q 047983          149 GSMFVMYCGSEDKCLLKLNYS--LLEGINSDTEFALKLAKEESIIVLPGITVG--LKDWLRITFAV--EPSAFEIGLGRM  222 (233)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--~~~~~Rl~~~~--~~~~l~~~~~~l  222 (233)
                      -.-++            ++.+  ...++  +...+.+.|.++||.+. +..+.  ..+.+|+|+..  +.++++..++.|
T Consensus       378 ~~~~~------------~~~~~~~~~g~--~~~~v~~~L~~~Gi~~~-~~~~p~~~~~~l~is~~e~~t~edid~l~~~l  442 (481)
T PRK04366        378 MHEFV------------LSGKKLKETGV--RTLDIAKRLLDYGFHPP-TIYFPLIVPEALMIEPTETESKETLDAFIAAM  442 (481)
T ss_pred             eEEEE------------EECccccccCC--CHHHHHHHHHHCCccCC-ccccccccCCeEEEcccCCCCHHHHHHHHHHH
Confidence            11121            1211  11122  44556666678899865 22332  25689999874  789999999999


Q ss_pred             HHHHHHHh
Q 047983          223 KAFYYRHA  230 (233)
Q Consensus       223 ~~~l~~~~  230 (233)
                      .++.++..
T Consensus       443 ~~i~~~~~  450 (481)
T PRK04366        443 KQIAEEAK  450 (481)
T ss_pred             HHHHHHHH
Confidence            98887664

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=98.29  E-value=4.3e-05  Score=66.58  Aligned_cols=186  Identities=16%  Similarity=0.064  Sum_probs=108.8

Q ss_pred             cCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhhhhhHHhhh
Q 047983           10 LGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMD   89 (233)
Q Consensus        10 ~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (233)
                      +|+++|+|-+-+-    +..+..+..   ++  +++.|--|.+|.||  +|.+++++  ..++++.-.    ......+.
T Consensus       165 ~g~l~vVDavss~----g~~~idv~~---~d--~~~~ssqK~lgP~G--lg~l~~s~--~~l~~~~~~----~~~~~~~~  227 (360)
T PRK05355        165 GDVPLVADMSSDI----LSRPIDVSK---FG--LIYAGAQKNIGPAG--LTIVIVRE--DLLGRALPS----IPSMLDYK  227 (360)
T ss_pred             CCCcEEEEcCccc----cCccCCHHH---cc--EEEEeccccccCCc--eEEEEECH--HHHhhcccC----CChHHHHH
Confidence            7899999988876    233333332   23  88899999998777  78888887  444321110    00000111


Q ss_pred             hhhh--hccC-cchHH-HHHHHHhhhcHHH-HHHHHHHHHHHHHHHHHHHhhcCCCcccccCC--CccEEEEEecCCCcc
Q 047983           90 DYLL--LSES-VYTTV-GAVPQILEKTEEE-FFSKITDILREAADICCDRLKEIPCITCPKKP--EGSMFVMYCGSEDKC  162 (233)
Q Consensus        90 ~~~~--~~~~-~~~~~-~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~g~~~~~~~~~~~~  162 (233)
                      ....  ...+ ++... .++.+.++.-.+. -++.+.++.++..+++++.|++++....+..+  .++.-..        
T Consensus       228 ~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~s--------  299 (360)
T PRK05355        228 THADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVP--------  299 (360)
T ss_pred             HHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEE--------
Confidence            0001  1112 22222 5555444322223 37888899999999999999998632211111  1222222        


Q ss_pred             cccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          163 LLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                       +.++..    .  ........+.++|+...+|..  ..+.+|+|+..  +.++++..++.|+++++..
T Consensus       300 -f~~~~~----~--~~~~~~~~~~~~Gi~~~~~~~--~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~~  359 (360)
T PRK05355        300 -FTLADE----E--LDKKFLAEAKAAGLVGLKGHR--SVGGMRASIYNAMPLEGVQALVDFMKEFERRH  359 (360)
T ss_pred             -EEcCCh----H--HHHHHHHHHHHCCCcccCCCC--ccCcEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence             223211    1  224444566678999866653  34789999986  7999999999999887653

>PRK15029 arginine decarboxylase; Provisional

Probab=98.26  E-value=5.5e-05  Score=71.37  Aligned_cols=64  Identities=11%  Similarity=0.003  Sum_probs=41.5

Q ss_pred             ChHHHHHHHcCcEEEEccccC-ccccCCCcccccccc-----C-CccCEEEEccCccccCCCCceEEEEEecC
Q 047983            1 FCIEETTKKLGIMVIADEVYG-HLVFGNTHFVPMGVF-----G-SIVPVLTLGSISKRWIVPGWRLGWLVTSD   66 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~-----~-~~~~~i~~~s~sK~~~~~G~R~G~~~~~~   66 (233)
                      ++|+++|++++++|++||+|+ +|.|.+ ......++     . ....++++.|..|+ ..+=...+|+...+
T Consensus       331 ~~I~~~~h~~~~~llvDEAhGah~~F~~-~~p~~sa~~~~~~~~~Gad~~vvqStHKt-L~alTQaS~LHv~~  401 (755)
T PRK15029        331 KEAQDLLEKTSDRLHFDEAWYGYARFNP-IYADHYAMRGEPGDHNGPTVFATHSTHKL-LNALSQASYIHVRE  401 (755)
T ss_pred             HHHHHHHHhcCCeEEEECccccccccCc-cccccccccccccccCCCceEEEEchhhc-ccchhhhhhheeCC
Confidence            368999999999999999998 455543 22112333     1 11235999999997 33333445666654

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=98.25  E-value=7.6e-05  Score=65.37  Aligned_cols=205  Identities=15%  Similarity=0.079  Sum_probs=99.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccc-cCCCccccccccCCccCEEEEccC--ccccCCCCceEEEEEecCCCccccccchh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLV-FGNTHFVPMGVFGSIVPVLTLGSI--SKRWIVPGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~--sK~~~~~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++|.++|++||++||+|++++... +.+..   +......+  +.+.|+  +|.++.+  .-|++++.++ .+.+++...
T Consensus       138 ~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~---~g~~~~~d--~~~~S~~~~K~~~~~--~GG~v~~~~~-~~~~~~~~~  209 (380)
T TIGR03588       138 QAIAALAKKHGLKIIEDASHALGAEYGGKP---VGNCRYAD--ATVFSFHPVKIITTA--EGGAVTTNDE-ELAERMRLL  209 (380)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccCccCCEe---CCCccccc--eEEEecCCCCccccc--CceEEEECCH-HHHHHHHHH
Confidence            378999999999999999998642 33322   11111113  455555  4876542  3577777663 333221111


Q ss_pred             hhhhhhhHHhh--------hhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC
Q 047983           78 FFHSISLNMRM--------DDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE  148 (233)
Q Consensus        78 ~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  148 (233)
                      +.+........        ..+.....+.+... ...+++...+. +.+++..+.-+++.+++.+.|.+++.+..+..+.
T Consensus       210 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL-~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~  288 (380)
T TIGR03588       210 RSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQL-KKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPL  288 (380)
T ss_pred             HHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCC
Confidence            00000000000        00000000001111 11122210111 2346666777777888888888876554322222


Q ss_pred             c---cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcc----------------cCC-----CCcE
Q 047983          149 G---SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGIT----------------VGL-----KDWL  204 (233)
Q Consensus       149 ~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~----------------f~~-----~~~~  204 (233)
                      +   .++.. +       +.++..  .+.  +.+.+.+.|+++||.+.+...                +..     ...+
T Consensus       289 ~~~~~~~~~-~-------i~~~~~--~~~--~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l  356 (380)
T TIGR03588       289 GSKSAWHLY-P-------ILLDQE--FGC--TRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEI  356 (380)
T ss_pred             CCEeEEEEE-E-------EEECCc--CCC--CHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceE
Confidence            1   22222 0       223211  012  556667777888998864220                000     2457


Q ss_pred             EEEeec--CHHHHHHHHHHHHHHH
Q 047983          205 RITFAV--EPSAFEIGLGRMKAFY  226 (233)
Q Consensus       205 Rl~~~~--~~~~l~~~~~~l~~~l  226 (233)
                      ++.+..  ++++++..++.|++++
T Consensus       357 ~lP~~~~l~~~dv~~i~~~l~~~~  380 (380)
T TIGR03588       357 SLPLHPALTLEQQQRVVETLRKVL  380 (380)
T ss_pred             EcCCCCCCCHHHHHHHHHHHHHhC
Confidence            776665  7888888888877653

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=98.23  E-value=1.4e-06  Score=73.63  Aligned_cols=60  Identities=20%  Similarity=0.198  Sum_probs=41.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCc-cccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEec
Q 047983            1 FCIEETTKKLGIMVIADEVYGH-LVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTS   65 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~   65 (233)
                      ++|+++|+++|+++|+||+|+. +.+.+..+  .. ....+..+++.|++|.  ++|+|.|+++..
T Consensus       173 ~~I~~~~~~~g~~livDeA~~~~~~~~~~~~--~~-~~~~~~div~~S~hK~--l~g~~~~~~l~~  233 (294)
T cd00615         173 RKIVEEAHHRGLPVLVDEAHGAHFRFHPILP--SS-AAMAGADIVVQSTHKT--LPALTQGSMIHV  233 (294)
T ss_pred             HHHHHHHHhcCCeEEEECcchhhhccCcccC--cc-hhhcCCcEEEEchhcc--cchHhHHHHHHh
Confidence            4799999999999999999984 44443221  11 1223566999999997  477777665433

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=98.22  E-value=6.8e-05  Score=65.87  Aligned_cols=114  Identities=18%  Similarity=0.204  Sum_probs=66.1

Q ss_pred             hHHHHHHHcC-cEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC-CCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLG-IMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~-~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|+++|+++| +++|+|..+.....-    .|+. ++.+   |++.|.||.+++ ...=.|.+++++...+.        
T Consensus       161 ~i~~~a~~~g~~~~vVDnT~atp~~~----~pL~-~GaD---ivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~--------  224 (386)
T PF01053_consen  161 AIAKLAKEHGDILVVVDNTFATPYNQ----NPLE-LGAD---IVVHSATKYLSGHSDVMGGAVVVNGSSELY--------  224 (386)
T ss_dssp             HHHHHHHHTTT-EEEEECTTTHTTTC-----GGG-GT-S---EEEEETTTTTTTSSSE-EEEEEESSHHHHH--------
T ss_pred             HHHHHHHHhCCceEEeeccccceeee----ccCc-CCce---EEEeeccccccCCcceeeEEEEECchhhhh--------
Confidence            6899999998 999999999863211    1222 3333   889999998754 44445667765522232        


Q ss_pred             hhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           80 HSISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                            .+++.... ++....+.    .+++-...-+.+.-+.++..++...+.+.|++.|.+
T Consensus       225 ------~~l~~~~~~~G~~~~p~----da~ll~rgl~Tl~~R~~~~~~nA~~lA~~L~~hp~V  277 (386)
T PF01053_consen  225 ------DRLREFRRLLGATLSPF----DAWLLLRGLRTLPLRMERQNENAEALAEFLEEHPKV  277 (386)
T ss_dssp             ------HHHHHHHHHHT-B--HH----HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred             ------hhhcchhhhcCccchHH----HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence                  33332222 22222222    112112334556677788888999999999886644

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.19  E-value=0.00013  Score=65.05  Aligned_cols=57  Identities=19%  Similarity=0.281  Sum_probs=42.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEec
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTS   65 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~   65 (233)
                      ++|+++|+++|+++|+|++|..-.    ...++ .++.+   +++.|++|.++.+|-.+|.+++.
T Consensus       168 ~~I~~la~~~gi~livD~a~a~~~----~~~pl-~~gaD---ivv~S~tK~lgg~~~~~gG~v~~  224 (427)
T PRK05994        168 AAIAEVAHRAGLPLIVDNTLASPY----LIRPI-EHGAD---IVVHSLTKFLGGHGNSMGGIIVD  224 (427)
T ss_pred             HHHHHHHHHcCCEEEEECCccccc----cCCcc-ccCCc---EEEEcCccccCCCCCcEEEEEEe
Confidence            378999999999999999997421    11122 22332   88999999999888888887764

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.17  E-value=0.0001  Score=65.78  Aligned_cols=58  Identities=16%  Similarity=0.184  Sum_probs=42.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecC
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD   66 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~   66 (233)
                      ++|.++|+++|+++|+|+++..-.    ...++ ..+.+   +++.|++|.++..|--+|++++..
T Consensus       175 ~~I~~la~~~gi~liVD~t~a~~~----~~~pl-~~GaD---ivv~S~tK~lgg~G~~i~G~vv~~  232 (436)
T PRK07812        175 PGVAEVAHEAGVPLIVDNTIATPY----LIRPL-EHGAD---IVVHSATKYLGGHGTAIAGVIVDG  232 (436)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccc----cCCch-hcCCC---EEEEecccccCCCCCeEEEEEEcC
Confidence            478999999999999999886421    11122 12222   677999999998888888877753

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=98.13  E-value=0.00012  Score=63.72  Aligned_cols=187  Identities=15%  Similarity=0.074  Sum_probs=105.0

Q ss_pred             HHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhhhhh
Q 047983            5 ETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISL   84 (233)
Q Consensus         5 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      ++++.||+.+++|-+-+-    |..+..+..+   +  +.+.|--|.+|.+|  +|.+++++  .+++++.-. ..+.  
T Consensus       157 ~i~~~~g~~~~VDa~qs~----g~~~idv~~~---~--~~~ss~~K~lGP~G--~g~l~~~~--~~~~~~~~~-~~~~--  220 (355)
T cd00611         157 EVPDTGGVPLVADMSSNI----LSRPIDVSKF---G--VIYAGAQKNLGPAG--VTVVIVRK--DLLGKARKI-TPSM--  220 (355)
T ss_pred             eecccCCCeEEEEccccc----cCCCCCHHHh---C--EEEeecccccCCCc--eEEEEECH--HHHhhcccC-CCCc--
Confidence            466779999999998886    3333333322   2  45566799988887  78888877  344321110 0000  


Q ss_pred             HHhhhhh-hh-hccCcchH-H-HHHHHHhhhcHHH-HHHHHHHHHHHHHHHHHHHhhcCCCcc-cccCC--CccEEEEEe
Q 047983           85 NMRMDDY-LL-LSESVYTT-V-GAVPQILEKTEEE-FFSKITDILREAADICCDRLKEIPCIT-CPKKP--EGSMFVMYC  156 (233)
Q Consensus        85 ~~~~~~~-~~-~~~~~~~~-~-~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--~~g~~~~~~  156 (233)
                       ...... .. ...++++. . .++.+.++--.+. -++.+.++.++..+++++.|++++++. ....+  .++..+.  
T Consensus       221 -~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvs--  297 (355)
T cd00611         221 -LNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVP--  297 (355)
T ss_pred             -ccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEE--
Confidence             000100 00 01222222 2 4444443222222 267888999999999999999986642 11111  1222233  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAF  225 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~  225 (233)
                               +..+.   .. ........+.+.|+.+.+|..  ..+.+|+|+..  +.++++.+++.|+++
T Consensus       298 ---------f~~~~---~~-l~~~~~~~~~r~G~~~~~~~~--~~g~vR~S~~~~nt~edi~~l~~al~~~  353 (355)
T cd00611         298 ---------FRLGK---EE-LEKEFLKEAEAAGMIGLKGHR--SVGGIRASIYNALSLEGVQALADFMKEF  353 (355)
T ss_pred             ---------EEcCC---hh-hhHHHHHHHHHCCCcccCCCc--ccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence                     22211   10 123333466678998666654  23689999997  899999988888764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=4.8e-05  Score=65.31  Aligned_cols=196  Identities=17%  Similarity=0.137  Sum_probs=116.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCC--CccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGN--THFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++..+|...||.||.|+.-..+.  .....-..++..+--++++|++-+....|   |+++++.   ++-   .  
T Consensus       253 ~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~G---gFc~G~~---~i~---~--  321 (467)
T KOG1358|consen  253 PEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGG---GFCAGKS---FIA---D--  321 (467)
T ss_pred             HHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccccC---ceeecce---eeE---e--
Confidence            378999999999999999999766543  33333333444455588999999888788   9999854   321   1  


Q ss_pred             hhhhhhHHhhhhhhh-hccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEE
Q 047983           79 FHSISLNMRMDDYLL-LSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~  155 (233)
                       |     +++.+... ++++.++..  ++..++   .-.++-.++.+.+++....+...|....++.....|++.+... 
T Consensus       322 -h-----QrLSg~~Y~fSAslPp~la~aa~~ai---~i~~~~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~SPi~hl-  391 (467)
T KOG1358|consen  322 -H-----QRLSGSGYCFSASLPPYLAGAAIKAI---LIEEWNPEIVQPLRAKVAKFHAALSSNSGFIVSGSPESPIIHL-  391 (467)
T ss_pred             -e-----eeccccceeeeccCchhhhhhHHHHH---HHHhhCcchhhhhhccccccchhhhcCCceEEecCcCCceeee-
Confidence             1     44444333 344434332  333332   1222333355666666677777776654444334455544433 


Q ss_pred             ecCCCcccccccccccCCCCCh----HHHHHHHHhccCEEEECCcccCC------CCcEEEEeec--CHHHHHHHHHHHH
Q 047983          156 CGSEDKCLLKLNYSLLEGINSD----TEFALKLAKEESIIVLPGITVGL------KDWLRITFAV--EPSAFEIGLGRMK  223 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~gi~v~pg~~f~~------~~~~Rl~~~~--~~~~l~~~~~~l~  223 (233)
                               ++.-+.. .-+++    .+.+.+++.+ |+.++-....-.      ..-+|+|+..  ++++++++...|+
T Consensus       392 ---------~l~~~~~-s~e~e~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik  460 (467)
T KOG1358|consen  392 ---------QLERSYG-SREKEEKLLEEIVDKCIAE-GVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIK  460 (467)
T ss_pred             ---------eeccccc-chHHHHHHHHHHHHHHHhh-cceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence                     1211110 00112    2456666666 888876544421      4579999986  8999999999888


Q ss_pred             HHHHH
Q 047983          224 AFYYR  228 (233)
Q Consensus       224 ~~l~~  228 (233)
                      +....
T Consensus       461 ~~~~~  465 (467)
T KOG1358|consen  461 EVASA  465 (467)
T ss_pred             HHHHh
Confidence            76543

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=98.00  E-value=2.5e-05  Score=67.55  Aligned_cols=60  Identities=22%  Similarity=0.245  Sum_probs=42.9

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecC
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD   66 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~   66 (233)
                      +|.++|++||+++|.||+.+.+..+|.-. .....+-.+.+   -+++|.++. |+.+|.+++++
T Consensus       202 ~l~~lc~~~gillI~DEV~tG~gRtG~~~-a~~~~gv~PDi---v~~gK~l~g-G~p~sav~~~~  261 (339)
T PF00202_consen  202 ELRELCREHGILLIADEVQTGFGRTGKFF-ASEHYGVDPDI---VTFGKGLGG-GLPISAVLGSE  261 (339)
T ss_dssp             HHHHHHHHTT-EEEEEETTTTTTTTSSSS-GHHHHTSSSSE---EEEEGGGGT-TSSEEEEEEEH
T ss_pred             ehcccccccccceecccccccccccCCcc-ceecccccCcc---cccccchhh-hhhcccccccc
Confidence            68999999999999999999997776422 22222222233   356799554 69999999988

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK08114 cystathionine beta-lyase; Provisional

Probab=97.99  E-value=0.00035  Score=61.58  Aligned_cols=112  Identities=13%  Similarity=0.086  Sum_probs=68.6

Q ss_pred             ChHHHHHHHc--CcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCC-CceEEEEEecCCCccccccchh
Q 047983            1 FCIEETTKKL--GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVP-GWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~~--~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++|+++|+++  |+++|+|.++.--.    . .....++.+   +++.|.+|.++++ ..-.|.++.++  ...      
T Consensus       167 ~~Ia~ia~~~g~g~~lvVDnT~a~p~----~-~~pl~~GaD---ivv~S~tKyl~Ghsdv~~G~v~~~~--~~~------  230 (395)
T PRK08114        167 PAIVAAVRSVNPDAVIMIDNTWAAGV----L-FKALDFGID---ISIQAGTKYLVGHSDAMIGTAVANA--RCW------  230 (395)
T ss_pred             HHHHHHHHHhCCCCEEEEECCCcccc----c-cCHHHcCCc---EEEEcCcccccCCCcceeEEEEcCH--HHH------
Confidence            3689999998  49999999998622    1 222233443   9999999976554 47778666554  222      


Q ss_pred             hhhhhhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047983           78 FFHSISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC  140 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  140 (233)
                              ..++... ..+...++    ..+++-..+-+.+.-+.++..++...+.+.|++.|.
T Consensus       231 --------~~l~~~~~~~G~~~~p----~~a~l~~rgl~TL~lR~~~~~~na~~va~~L~~hp~  282 (395)
T PRK08114        231 --------EQLRENSYLMGQMVDA----DTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPE  282 (395)
T ss_pred             --------HHHHHHHHhccCCCCH----HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence                    2222221 22222222    222322233455667778888899999999987654

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=97.97  E-value=0.00039  Score=59.24  Aligned_cols=185  Identities=12%  Similarity=0.089  Sum_probs=99.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCc-cccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTH-FVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      .|.++|++|++..|+||+.....-+|.- ...-..++....   +-+|||-|- +|   ||.....         ++   
T Consensus       296 kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD---~vTFSKK~q-~g---Gffh~~~---------fr---  356 (484)
T KOG1405|consen  296 KLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPD---VVTFSKKFQ-TG---GFFHDEE---------FR---  356 (484)
T ss_pred             HHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCcc---ceehhhhhh-cC---ccccCcc---------cC---
Confidence            5789999999999999999885544421 011122233223   448999854 45   5655432         11   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEK-TEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                         ++..++.++++..-+.-. ..+..+++. ..+..+.+....=..-...|.+.-++.|+........|.|..|     
T Consensus       357 ---pn~pYrifNTWmGdP~k~-lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGrGTF~a~-----  427 (484)
T KOG1405|consen  357 ---PNEPYRIFNTWMGDPSKN-LLLEEVVQEIKREDLLNNVAHVGKALLKGLLELQAKYPGKINNLRGRGTFIAW-----  427 (484)
T ss_pred             ---CCchHHHhhhhcCChHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcccccceEEEE-----
Confidence               014566666654322222 222222222 2222333333322222233322223356554334555555555     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-CCcEEEEeecCHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-KDWLRITFAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~Rl~~~~~~~~l~~~~~~l~~~l~~  228 (233)
                             +++..    .-.+.....++-+||.+-   ++|. .-.+|-++...+.-.+..++++.+.+..
T Consensus       428 -------d~ps~----~~Rdk~i~~~~~nGv~~G---GCg~~siRfRPsLvf~~~Ha~i~l~~~~k~l~~  483 (484)
T KOG1405|consen  428 -------DCPSG----SIRDKLILIARLNGVNLG---GCGDKSIRFRPSLVFRKHHADIFLDIFDKILAG  483 (484)
T ss_pred             -------eCCCh----HHHHHHHHHHHHcCceec---ccccceeeeccceeehhhhHHHHHHHHHHHhcc
Confidence                   66531    245666777888898873   2332 2345557777777788888888887753

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=97.97  E-value=0.00052  Score=61.33  Aligned_cols=57  Identities=16%  Similarity=0.222  Sum_probs=43.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEec
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTS   65 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~   65 (233)
                      ++|.++|+++|+++|+|.++..-..    ..++ .++.+   +++.|.+|.++.+|-.+|.+++.
T Consensus       169 ~~I~~la~~~gi~livD~t~a~~~~----~~pl-~~GaD---~vv~S~tK~l~g~g~~~gG~v~~  225 (433)
T PRK08134        169 PTVAAIAHEAGVPLLVDSTFTTPYL----LRPF-EHGAD---LVYHSATKFLGGHGTAIGGVLVD  225 (433)
T ss_pred             HHHHHHHHHcCCEEEEECCCccccc----CCch-hcCCC---EEEeccccccCCCCCceEEEEEe
Confidence            4789999999999999999875221    1222 23333   88999999999899889888764

>PLN02452 phosphoserine transaminase

Probab=97.91  E-value=0.00052  Score=59.91  Aligned_cols=162  Identities=14%  Similarity=0.076  Sum_probs=91.6

Q ss_pred             EEccCccccCCCCceEEEEEecCCCccccccchhhhhhhhhHHhh-hhhhhhccCcchHH-HHHHHHhhhcHHH-HHHHH
Q 047983           44 TLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRM-DDYLLLSESVYTTV-GAVPQILEKTEEE-FFSKI  120 (233)
Q Consensus        44 ~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~  120 (233)
                      .+.|--|.+|.||  +|.+++++  ++++++.-.  ....+..+. .........++... .++...++.-.++ =++.+
T Consensus       194 ~~~saqK~lGP~G--l~~v~vr~--~~l~~~~~~--~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~  267 (365)
T PLN02452        194 IYAGAQKNVGPSG--VTIVIIRK--DLIGNARPI--TPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAM  267 (365)
T ss_pred             EEEecccccCCCC--eEEEEEcH--HHHhhcccC--CCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHH
Confidence            3469999999999  68888887  444321100  000000000 00001111222222 4444443222222 37888


Q ss_pred             HHHHHHHHHHHHHHhhcCCCcc-cccCC--CccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcc
Q 047983          121 TDILREAADICCDRLKEIPCIT-CPKKP--EGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGIT  197 (233)
Q Consensus       121 ~~~~~~~~~~l~~~L~~~~~~~-~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~  197 (233)
                      .++.+++.+++++.|++.+++. ....+  .+.+-+.         +.++  .   . +..+...+.++++|+...+|..
T Consensus       268 ~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vs---------F~~~--~---~-~~~~~f~~~~~~~g~~~~~G~r  332 (365)
T PLN02452        268 EKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVP---------FTLG--G---S-ELEAEFVKEAAKAGMVQLKGHR  332 (365)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEE---------EEcC--C---c-hhHHHHHHHHHHCCCcccCCcc
Confidence            9999999999999998865541 11111  2333444         2232  1   1 2566677778899999999886


Q ss_pred             cCCCCcEEEEeec--CHHHHHHHHHHHHHHHHH
Q 047983          198 VGLKDWLRITFAV--EPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       198 f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~  228 (233)
                      --  +.+|+++-.  +.++++.+++-++++-++
T Consensus       333 ~~--gg~R~s~yna~~~~~v~~L~~~m~~f~~~  363 (365)
T PLN02452        333 SV--GGMRASIYNAMPLAGVEKLVAFMKDFQAK  363 (365)
T ss_pred             cc--CceEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence            53  239998875  777777777776666544

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=97.90  E-value=1.9e-05  Score=60.15  Aligned_cols=58  Identities=14%  Similarity=-0.004  Sum_probs=43.9

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEec
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTS   65 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~   65 (233)
                      +|+++|+++|+++|+|++|..+......    ......+..+++.|++|.++.  .++||++++
T Consensus       113 ~l~~~~~~~~~~li~D~a~~~~~~~~~~----~~~~~~~~d~~~~s~~K~~~~--~~~G~l~~~  170 (170)
T cd01494         113 EIRKIAKEYGILLLVDAASAGGASPAPG----VLIPEGGADVVTFSLHKNLGG--EGGGVVIVK  170 (170)
T ss_pred             HHHHHHHHcCCEEEEecccccccccccc----cccccccCCEEEEEcccccCC--CceEEEEeC
Confidence            7899999999999999999987765422    111222345888999998766  789999863

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK13578 ornithine decarboxylase; Provisional

Probab=97.88  E-value=0.00026  Score=66.44  Aligned_cols=205  Identities=14%  Similarity=0.133  Sum_probs=101.5

Q ss_pred             hHHHH-HHHcCcEEEEccccCc-cccCCC--ccccc-cccCCc-cCEEEEccCccccCCCCceEEEEEecCCCccccc-c
Q 047983            2 CIEET-TKKLGIMVIADEVYGH-LVFGNT--HFVPM-GVFGSI-VPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD-L   74 (233)
Q Consensus         2 ~i~~l-~~~~~~~lI~De~y~~-~~~~~~--~~~~~-~~~~~~-~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~-~   74 (233)
                      +|+++ |+.++ +|++||+|+. +.|.+.  ..++. ...+.+ .-++++.|..|. ..+=...+|+...+  ..++. =
T Consensus       302 ~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKt-L~alTQaS~LHvk~--~~i~g~~  377 (720)
T PRK13578        302 QVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQ-QAGFSQTSQIHKKD--NHIKGQA  377 (720)
T ss_pred             HHHHHhhccCC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhc-chhhhhHhhhhcCC--ccccccc
Confidence            57787 67778 9999999994 444431  11111 223333 457999999997 33333445666654  12210 0


Q ss_pred             chhhhhhhhhHHhhhhhhhh--ccCcchHH-HH---HHHHhhh-cHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-
Q 047983           75 GVAFFHSISLNMRMDDYLLL--SESVYTTV-GA---VPQILEK-TEEEFFSKITDILREAADICCDRLKEIPCITCPKK-  146 (233)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~---~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-  146 (233)
                      ..+.      -.+++....+  +++|+.+. +.   .++++.. .+.+.+++..+...+-|+.+.+.++.   +..+.+ 
T Consensus       378 ~~v~------~~r~~~al~m~qSTSPsY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~---~~~~~p~  448 (720)
T PRK13578        378 RYCP------HKRLNNAFMLHASTSPFYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKL---IRPFIPP  448 (720)
T ss_pred             ccCC------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCC---eeecccc
Confidence            0000      0334433332  33444443 22   2333332 23444445444444444444333332   221110 


Q ss_pred             -------------------------CC----------ccEEEEEecCCCcccccccccccC---------CCCChHHHHH
Q 047983          147 -------------------------PE----------GSMFVMYCGSEDKCLLKLNYSLLE---------GINSDTEFAL  182 (233)
Q Consensus       147 -------------------------~~----------~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~  182 (233)
                                               |.          .+.|.+     ||.++.+..+...         |+  ....+.
T Consensus       449 ~v~~~~~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~l-----DP~KltI~t~G~~~~~G~~~~~Gi--pg~~l~  521 (720)
T PRK13578        449 VVDGKPWQDYPTEQIASDLRFFSFEPGEKWHGFEGYAEDQYFV-----DPCKLLLTTPGIDAETGEYEDFGI--PATILA  521 (720)
T ss_pred             cccccccccCchhhhcccccccccccCcccccccccccccccc-----CCceEEEEcCCcCcccccccccCc--cHHHHH
Confidence                                     11          012222     6777666553321         11  256677


Q ss_pred             HHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHH
Q 047983          183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       183 ~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~  228 (233)
                      +.|.++||.+--.+.+.  --+=++++.++++++.+++.|.++-+.
T Consensus       522 ~~L~e~gI~~E~~d~~~--vL~l~s~g~t~~~~~~Lv~aL~~f~~~  565 (720)
T PRK13578        522 NYLRENGIVPEKCDLNS--ILFLLTPAEDMAKLQQLVAMLARFEKH  565 (720)
T ss_pred             HHHHHcCCEEEecCCCe--EEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence            78877799986433211  123356666788888888888776443

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=97.87  E-value=0.0013  Score=58.83  Aligned_cols=57  Identities=21%  Similarity=0.255  Sum_probs=36.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCcccc-CCCccccccccCCccCEEEEccC--ccccC-CCCceEEEEEecCC
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVF-GNTHFVPMGVFGSIVPVLTLGSI--SKRWI-VPGWRLGWLVTSDP   67 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~-~~~~~~~~~~~~~~~~~i~~~s~--sK~~~-~~G~R~G~~~~~~~   67 (233)
                      ++|.++|++||++||+|++++.... .+..   +..++  +  +.+.||  +|.+. +.|   |+++++++
T Consensus       176 ~~I~~la~~~gi~vIeDaa~a~G~~~~g~~---~G~~g--d--~~~fSf~~~k~~~~geG---G~l~t~d~  236 (438)
T PRK15407        176 AAVKAFCDKHNLWLIEDNCDALGSTYDGRM---TGTFG--D--IATLSFYPAHHITMGEG---GAVFTNDP  236 (438)
T ss_pred             HHHHHHHHHCCCEEEEECccchhhhcCCee---eeccC--c--eEEEeCCCCCCccccCc---eEEEECCH
Confidence            3789999999999999999986432 2221   22222  1  334454  45443 234   89999874

>PLN02724 Molybdenum cofactor sulfurase

Probab=97.85  E-value=0.00088  Score=64.42  Aligned_cols=193  Identities=13%  Similarity=0.089  Sum_probs=101.9

Q ss_pred             cEEEEccccCccccCCCccccccccCCccCEEEEccCccccC-CCCceEEEEEecCCCccccccchhhhh--hh----hh
Q 047983           12 IMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWI-VPGWRLGWLVTSDPNGILQDLGVAFFH--SI----SL   84 (233)
Q Consensus        12 ~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~R~G~~~~~~~~~~~~~~~~~~~~--~~----~~   84 (233)
                      +++++|-+..-    +..+..+..++.+   ++..|.-|.+| ..|  +|.+.+++  .+.+.+.-....  +.    ..
T Consensus       231 ~~v~vDaaQ~~----g~~piDv~~~~~D---fl~~S~HK~~GgP~G--~G~L~vr~--~~~~~l~p~~~GGg~~~~~~~~  299 (805)
T PLN02724        231 WMVLLDAAKGC----GTSPPDLSRYPAD---FVVVSFYKIFGYPTG--LGALLVRR--DAAKLLKKKYFGGGTVAASIAD  299 (805)
T ss_pred             eEEEeehhhhc----CCCCCChhhcCCC---EEEEecceeccCCCC--ceEEEEeh--hhhhhhcCCccCCCceEEEecc
Confidence            57999988775    3333444444443   88899999877 345  78888876  333211100000  00    00


Q ss_pred             HHh--hhh--hhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC------CcccccC------
Q 047983           85 NMR--MDD--YLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP------CITCPKK------  146 (233)
Q Consensus        85 ~~~--~~~--~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~------~~~~~~~------  146 (233)
                      ...  ...  ...+-.+++...  .++++.++-...--++++.++.++..+++.+.|++++      ++..+.+      
T Consensus       300 ~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~  379 (805)
T PLN02724        300 IDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLE  379 (805)
T ss_pred             cceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCC
Confidence            000  000  001112222222  3333333211111345667777888888888887764      2332211      


Q ss_pred             --CCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC------------------------
Q 047983          147 --PEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL------------------------  200 (233)
Q Consensus       147 --~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------------------------  200 (233)
                        ..++.+.+          .+.......+  ....+.+++.++||.++.|..+.+                        
T Consensus       380 ~~~r~~ivsF----------nv~~~~~~~v--~~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c  447 (805)
T PLN02724        380 FHIQGPIVTF----------NLKRADGSWV--GHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVC  447 (805)
T ss_pred             cccccCEEEE----------EEEcCCCCEe--CHHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCcc
Confidence              12344433          1111000011  334566778888999998866531                        


Q ss_pred             -----------CCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 047983          201 -----------KDWLRITFAV--EPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       201 -----------~~~~Rl~~~~--~~~~l~~~~~~l~~~l~  227 (233)
                                 .+.+|+|++.  +.++++.+++.|++..-
T Consensus       448 ~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~  487 (805)
T PLN02724        448 WDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFV  487 (805)
T ss_pred             CchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhh
Confidence                       2679999996  78899988888887553

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=97.84  E-value=0.0019  Score=57.64  Aligned_cols=189  Identities=16%  Similarity=0.167  Sum_probs=111.5

Q ss_pred             hHHHHHHHcCcEEEEccccCc----cc------cCCCcccccc----ccCCccCEEEEccCccccCCC-CceEEEEEecC
Q 047983            2 CIEETTKKLGIMVIADEVYGH----LV------FGNTHFVPMG----VFGSIVPVLTLGSISKRWIVP-GWRLGWLVTSD   66 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~----~~------~~~~~~~~~~----~~~~~~~~i~~~s~sK~~~~~-G~R~G~~~~~~   66 (233)
                      +|.++|++||+.||+|-+...    |+      |.+.   ++.    .+..... ..+.|++|..+.+ |   |++++.+
T Consensus       202 ~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~---~i~ei~~e~~s~aD-~~t~S~~K~~~~~~G---G~i~t~D  274 (460)
T PRK13237        202 AVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDK---SIKEIVHEMFSYAD-GCTMSGKKDCLVNIG---GFLAMND  274 (460)
T ss_pred             HHHHHHHHcCCEEEEECcchhcChhhhcccccccCCC---cHhHHhhhccCcCc-EEEEeCCCCCCCCCc---eEEEECC
Confidence            688999999999999998873    22      2121   221    1111111 5567799987665 5   8888877


Q ss_pred             CCccccccchhhhhhhhhHHhhhhh--h--hh-ccCcc-hHH-HHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 047983           67 PNGILQDLGVAFFHSISLNMRMDDY--L--LL-SESVY-TTV-GAVPQILEKT-EEEFFSKITDILREAADICCDRLKEI  138 (233)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~-~~~~~-~~~-~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~  138 (233)
                      + +++              .+++..  .  .+ +-+.. ... ++++.-+.+. ..+++..    --++.++|.+.|++.
T Consensus       275 ~-eL~--------------~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~----ri~~~~~l~~~L~~~  335 (460)
T PRK13237        275 E-ELF--------------DEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEH----RVGQVRYLGEKLLAA  335 (460)
T ss_pred             H-HHH--------------HHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHHH----HHHHHHHHHHHHHHC
Confidence            4 343              333333  1  11 11111 111 4555433222 2233333    334567788888775


Q ss_pred             CCcccccCCCccEEEEEecCCCccccccccccc-CCC----CChHHHHHHHHhccCEEEECCcccC-------C------
Q 047983          139 PCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLL-EGI----NSDTEFALKLAKEESIIVLPGITVG-------L------  200 (233)
Q Consensus       139 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~ll~~~gi~v~pg~~f~-------~------  200 (233)
                       ++.+ ..|.||--++           ++...+ +++    -+...++..+..+.||.-.--+.+.       .      
T Consensus       336 -Gvpv-~~p~ggH~v~-----------vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~  402 (460)
T PRK13237        336 -GVPI-VEPVGGHAVF-----------LDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPK  402 (460)
T ss_pred             -CCce-ecCCCceEEE-----------EEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCc
Confidence             5554 5688887777           433221 111    1466788888889999876422331       0      


Q ss_pred             CCcEEEEeec---CHHHHHHHHHHHHHHHHHH
Q 047983          201 KDWLRITFAV---EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       201 ~~~~Rl~~~~---~~~~l~~~~~~l~~~l~~~  229 (233)
                      -..+|+++.-   +.+.++.+.+++..+.++.
T Consensus       403 ~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~  434 (460)
T PRK13237        403 LELVRLTIPRRVYTYAHMDVVADSVIKLYKHR  434 (460)
T ss_pred             cceeeeccccccccHHHHHHHHHHHHHHHHhH
Confidence            1569999983   7888999999988877654

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=97.83  E-value=0.00096  Score=58.53  Aligned_cols=114  Identities=15%  Similarity=0.052  Sum_probs=70.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccC-CCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWI-VPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|+++|+.+|+|..|..-.+-.     ...++.+   |++.|.||.++ ...+=.|.++++++  .+.        
T Consensus       170 ~i~~~A~~~g~~vvVDNTfatP~~q~-----PL~~GaD---IVvhSaTKyl~GHsDvl~G~v~~~~~--~~~--------  231 (396)
T COG0626         170 AIARLAKAYGALVVVDNTFATPVLQR-----PLELGAD---IVVHSATKYLGGHSDVLGGVVLTPNE--ELY--------  231 (396)
T ss_pred             HHHHHHHhcCCEEEEECCcccccccC-----hhhcCCC---EEEEeccccccCCcceeeeEEecChH--HHH--------
Confidence            68999999999999999998743321     2223443   99999999874 46666675665552  221        


Q ss_pred             hhhhHHhhh-hhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 047983           81 SISLNMRMD-DYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCIT  142 (233)
Q Consensus        81 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  142 (233)
                           ..+. ... .++....+.    .+++--.+-+-+.-+.++..+|...+.+.|++.|.+.
T Consensus       232 -----~~~~~~~~~~~G~~l~p~----dA~l~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~  286 (396)
T COG0626         232 -----ELLFFAQRANTGAVLSPF----DAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVK  286 (396)
T ss_pred             -----HHHHHHHHhhcCCCCCHH----HHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence                 2221 111 233333332    2233233445667777888888999999998865443

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=97.81  E-value=0.0022  Score=62.54  Aligned_cols=206  Identities=12%  Similarity=0.021  Sum_probs=115.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccC----CCCceEEEEEecCCCccccccchh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWI----VPGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~----~~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      +|.++|+++|+.+++|-+..--..   .......++.+   ++..|..|+|+    ..|--+|.+.+.+  .+...|.-.
T Consensus       687 eI~~iah~~Galv~vDgAq~~a~~---~l~~p~~~GaD---~~~~s~HK~f~~P~G~GGPg~G~l~~~~--~L~p~lPg~  758 (993)
T PLN02414        687 EICDIIHDNGGQVYMDGANMNAQV---GLTSPGFIGAD---VCHLNLHKTFCIPHGGGGPGMGPIGVKK--HLAPFLPSH  758 (993)
T ss_pred             HHHHHHHHcCCEEEEEecCHHhcc---CcCCccccCCC---EEEecCCccCCcCcccCCCCeeeEEEch--hhcccCCCC
Confidence            689999999999999999864110   11122233443   77888999654    2344589998887  444322110


Q ss_pred             hhh--hhhhHHhhhhhhhhcc---CcchHH-HHH--HHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCc
Q 047983           78 FFH--SISLNMRMDDYLLLSE---SVYTTV-GAV--PQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEG  149 (233)
Q Consensus        78 ~~~--~~~~~~~~~~~~~~~~---~~~~~~-~~~--~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  149 (233)
                       ..  ......+.. ..+.+.   .+..++ .+.  ..++...+.+-+++..+....+.+++.+.|++..+.. +..|.+
T Consensus       759 -~v~~~~~~~~r~~-~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~-~~~~~~  835 (993)
T PLN02414        759 -PVVPTGGIPRPEK-TQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYPVL-FRGKNG  835 (993)
T ss_pred             -ccccCCCcccccC-CCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCcc-ccCCCC
Confidence             00  000001111 011111   111111 111  2223333556788888999999999999997732333 234444


Q ss_pred             cEEEEEecCCCcccccccccccC---CCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 047983          150 SMFVMYCGSEDKCLLKLNYSLLE---GINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKA  224 (233)
Q Consensus       150 g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~  224 (233)
                      .++-=         +.++...++   ++ +..+...+++ ++||...- -.|...+.+|++...  +.++++..++.|.+
T Consensus       836 ~~~hE---------fv~~~~~l~~~~g~-~~~di~krL~-d~Gihapt-~~~pv~~~lmiepTE~~skeelDrf~~al~~  903 (993)
T PLN02414        836 TCAHE---------FIIDLRPFKNTAGI-EPEDVAKRLM-DYGFHAPT-MSWPVPGTLMIEPTESESKAELDRFCDALIS  903 (993)
T ss_pred             Ceeee---------EEEeccccccccCC-CHHHHHHHHH-HcCcEEee-eccccCCEEEEEeeeeCCHHHHHHHHHHHHH
Confidence            31111         112222211   22 2345555555 88998654 335557899998885  78899999999988


Q ss_pred             HHHHHh
Q 047983          225 FYYRHA  230 (233)
Q Consensus       225 ~l~~~~  230 (233)
                      +..+..
T Consensus       904 i~~e~~  909 (993)
T PLN02414        904 IREEIA  909 (993)
T ss_pred             HHHHHH
Confidence            877764

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.78  E-value=0.0018  Score=56.43  Aligned_cols=205  Identities=19%  Similarity=0.179  Sum_probs=99.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccc-cCCCccccccccCCccCEEEEccC--ccccCCCCceEEEEEecCCCccccccchh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLV-FGNTHFVPMGVFGSIVPVLTLGSI--SKRWIVPGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~--sK~~~~~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++|.++|++||++||+|-+++.-. |.|...-++   ++    +.+.||  +|.++..  --|.+++.++ ++.+++...
T Consensus       139 ~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~---Gd----~~~fSF~~~K~ittg--EGGav~tnd~-ela~k~~~l  208 (374)
T COG0399         139 DAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSF---GD----IGAFSFHATKNLTTG--EGGAVVTNDE-ELAEKARSL  208 (374)
T ss_pred             HHHHHHHHHcCCeEEEEcchhccCeecCcccccc---cc----eEEEEecCCCCcccc--CceEEEeCCH-HHHHHHHHH
Confidence            478999999999999999998533 233221112   11    222233  5654333  2277777774 555443333


Q ss_pred             hhhhhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           78 FFHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                      +.|...... ...+.-...+.+... ...+++.-.+ -+.+++..++=++..+...+.|++++++..+..+.+..-.|..
T Consensus       209 r~hG~~~~~-~~~y~~~~~G~N~rm~~iqAAigl~Q-L~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~  286 (374)
T COG0399         209 RNHGLSRDA-VFKYLHEELGYNYRLTEIQAAIGLAQ-LERLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHL  286 (374)
T ss_pred             HHhCcCCCc-cccceeeecccccCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeee
Confidence            333221100 000101112222222 2333331111 1223333333444455556666666544444444443222200


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEE----EECCccc--------------CC-----CCcEEEEeec--C
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESII----VLPGITV--------------GL-----KDWLRITFAV--E  211 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~----v~pg~~f--------------~~-----~~~~Rl~~~~--~  211 (233)
                      +     .+.++..   +  .+.+.+...|++.||.    ..|-...              ..     ..-+++.+.+  +
T Consensus       287 ~-----~i~~~~~---~--~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~  356 (374)
T COG0399         287 Y-----TILVDEE---G--ISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLS  356 (374)
T ss_pred             e-----EEEecCC---C--CCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCC
Confidence            0     0122221   1  2678888889898554    3442211              00     2446666655  7


Q ss_pred             HHHHHHHHHHHHHHHH
Q 047983          212 PSAFEIGLGRMKAFYY  227 (233)
Q Consensus       212 ~~~l~~~~~~l~~~l~  227 (233)
                      ++++++.++.|++++.
T Consensus       357 ~~~~~~V~~~l~~~~~  372 (374)
T COG0399         357 EEDVDRVIEALKEVLG  372 (374)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            8888888888887764

>PRK04311 selenocysteine synthase; Provisional

Probab=97.78  E-value=0.0013  Score=59.13  Aligned_cols=196  Identities=16%  Similarity=0.078  Sum_probs=99.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccc----cCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccch
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLV----FGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGV   76 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~----~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~   76 (233)
                      ++|+++|++||+++|+|...+.+.    ++-.....+......+--+++.|.+|.+++|  ..|++++++  ++++    
T Consensus       240 ~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp--~~G~i~g~~--~li~----  311 (464)
T PRK04311        240 AELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP--QAGIIVGKK--ELIA----  311 (464)
T ss_pred             HHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC--ceEEEEEcH--HHHH----
Confidence            478999999999999999654331    1100111111111112238899999987766  489999877  3442    


Q ss_pred             hhhhhhhhHHhhhhh---hhhccCcchHH---HHHHHHhhhc-------HHHHHHHHHHHHHHHHHHHHHHhhcCC--Cc
Q 047983           77 AFFHSISLNMRMDDY---LLLSESVYTTV---GAVPQILEKT-------EEEFFSKITDILREAADICCDRLKEIP--CI  141 (233)
Q Consensus        77 ~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~  141 (233)
                                +++..   ..+.....+..   +.+..++...       ..+.+....+.+++|.+.+.+.|+...  ++
T Consensus       312 ----------~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~  381 (464)
T PRK04311        312 ----------RLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAF  381 (464)
T ss_pred             ----------HHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCe
Confidence                      22210   01111112221   2222222111       112234445777788888888887642  11


Q ss_pred             ccccCCC-----ccEEEEEecCCCccc-ccccccccCCCCChHHHHHHHHhccC--EEEECCcccCCCCcEEEEeec-CH
Q 047983          142 TCPKKPE-----GSMFVMYCGSEDKCL-LKLNYSLLEGINSDTEFALKLAKEES--IIVLPGITVGLKDWLRITFAV-EP  212 (233)
Q Consensus       142 ~~~~~~~-----~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~g--i~v~pg~~f~~~~~~Rl~~~~-~~  212 (233)
                      ..-..+.     ||-.--   ++=++. +.++..   +.  +...+.+.|++..  |+.+.     .++.+.+.+-+ .+
T Consensus       382 ~~~~~~~~~~~gggs~p~---~~~~~~~v~~~~~---~~--~~~~l~~~lr~~~~~i~~r~-----~~~~~~ld~r~~~~  448 (464)
T PRK04311        382 AVEVVPSFSQVGGGSLPV---DRLPSAAVTLTPK---DR--SLEALAARLRLLPPPVIGRI-----EDGRLLLDLRTLEE  448 (464)
T ss_pred             eEEEEEccCccCCCCCcC---CCCCeEEEEEeCC---CC--CHHHHHHHHhcCCCCEEEEE-----ECCEEEEEeCcCCH
Confidence            0000111     110000   000000 112211   11  5566667777644  44432     24677787777 78


Q ss_pred             HHHHHHHHHHHHHHH
Q 047983          213 SAFEIGLGRMKAFYY  227 (233)
Q Consensus       213 ~~l~~~~~~l~~~l~  227 (233)
                      ++++...++|.+++.
T Consensus       449 ~~~~~~~~~~~~~~~  463 (464)
T PRK04311        449 EDEERLAAALLEALN  463 (464)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            888888888887753

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=97.72  E-value=0.0018  Score=57.83  Aligned_cols=208  Identities=13%  Similarity=0.025  Sum_probs=110.2

Q ss_pred             ChHHHHHHHc------CcEEEEccccCcccc---CCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccc
Q 047983            1 FCIEETTKKL------GIMVIADEVYGHLVF---GNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL   71 (233)
Q Consensus         1 ~~i~~l~~~~------~~~lI~De~y~~~~~---~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~   71 (233)
                      ++|.++|+++      |+++.+|-+|+.+..   .+.....+.   ...---...|..|. +..-.-+|.+..++...+.
T Consensus       206 ~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~---~~~~DSis~s~HK~-~~~P~g~G~l~~r~~~~l~  281 (431)
T TIGR01788       206 KALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR---LPRVKSINVSGHKY-GLVYPGVGWVIWRDEEALP  281 (431)
T ss_pred             HHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC---CCCceEEEECchhc-cCCCCCcEEEEEeChHHcc
Confidence            4799999999      999999999996442   122222221   11112456688996 4334448888887632121


Q ss_pred             cccchhhhhhhhhHHhhhhhhhhccCcchHHHHHHHHh--hhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-CC
Q 047983           72 QDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQIL--EKTEEEFFSKITDILREAADICCDRLKEIPCITCPKK-PE  148 (233)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~  148 (233)
                      +.   ...+..-+.....+ .++..+.+.. .+++.++  ...+..=.++..+...+..+++.+.|++.+++....+ |.
T Consensus       282 ~~---~~~~~~yl~~~~~~-~t~~~sR~g~-~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~  356 (431)
T TIGR01788       282 EE---LIFHVNYLGGDEPT-FTLNFSRPAN-QVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSG  356 (431)
T ss_pred             hh---heecccccCCCCCC-cceecCchHH-HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCC
Confidence            11   00000000000000 0111111110 1222222  1223345667778888889999999988877765443 45


Q ss_pred             ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCc---ccCCCCcEEEEeec--CHHHHHHHHHHHH
Q 047983          149 GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGI---TVGLKDWLRITFAV--EPSAFEIGLGRMK  223 (233)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~---~f~~~~~~Rl~~~~--~~~~l~~~~~~l~  223 (233)
                      .+...+          +++.....+.  +...+.+.|.++|+.+..-.   ......++|+++-.  +.+.++..++-|.
T Consensus       357 ~~iV~F----------r~~~~~~~~~--~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~  424 (431)
T TIGR01788       357 IPLVAF----------KLKDDADPGY--TLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIE  424 (431)
T ss_pred             ceEEEE----------EeCCCCCCCc--CHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHH
Confidence            554444          1211000011  34456667778898753211   12223468998863  6788888888888


Q ss_pred             HHHHHH
Q 047983          224 AFYYRH  229 (233)
Q Consensus       224 ~~l~~~  229 (233)
                      +++.+.
T Consensus       425 ~~~~~~  430 (431)
T TIGR01788       425 AALAYL  430 (431)
T ss_pred             HHHHhh
Confidence            877653

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=97.69  E-value=0.0017  Score=56.65  Aligned_cols=57  Identities=18%  Similarity=0.125  Sum_probs=41.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC-CCceEEEEEec
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTS   65 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~R~G~~~~~   65 (233)
                      ++|+++|+++|++||+|+.+.....-  .   ...++.+   |++.|.+|.+++ ..+=.|-++.+
T Consensus       182 ~~l~~la~~~g~~vvVDnTf~~p~~~--~---pL~lGAD---IV~hSaTKyi~Ghsdvi~G~iv~n  239 (409)
T KOG0053|consen  182 EKLARLAHKYGFLVVVDNTFGSPYNQ--D---PLPLGAD---IVVHSATKYIGGHSDVIGGSVVLN  239 (409)
T ss_pred             HHHHHHHhhCCCEEEEeCCcCccccc--C---hhhcCCC---EEEEeeeeeecCCcceeeeEEecC
Confidence            47899999999999999999985322  1   2223444   999999998865 45555555554

>PRK05367 glycine dehydrogenase; Provisional

Probab=97.69  E-value=0.0029  Score=61.66  Aligned_cols=203  Identities=13%  Similarity=0.047  Sum_probs=108.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccC----CCCceEEEEEecCCCccccccchh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWI----VPGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~----~~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      +|+++|+++|+++++|-++..-...   ..+...++.+   ++..|..|.|+    ..|--+|.+.+..  .+...|.- 
T Consensus       661 eI~~i~h~~G~~v~VDgA~~~al~~---l~~pg~~GAD---i~~~s~HK~f~~P~G~GGPg~G~l~vr~--~l~p~lpg-  731 (954)
T PRK05367        661 EICEIVHEHGGQVYLDGANMNAQVG---LARPGDIGAD---VSHLNLHKTFCIPHGGGGPGVGPIGVKA--HLAPFLPG-  731 (954)
T ss_pred             HHHHHHHHcCCEEEEECcChhhccC---CCChhhcCCC---EEEecCcccCCCCcCCCCCceEEEeecc--cccccCCC-
Confidence            6899999999999999999632211   1111223333   77788889864    2233478888775  23321110 


Q ss_pred             hhhhhhhHHhhh-hhhhhccCcchHH-HH--HHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCc----
Q 047983           78 FFHSISLNMRMD-DYLLLSESVYTTV-GA--VPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEG----  149 (233)
Q Consensus        78 ~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----  149 (233)
                        +.... .... .....+.+...++ .+  ...++...+.+-+++..+..-.+.+++.+.|++.-.+. +..|.+    
T Consensus       732 --~~v~~-~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~-~~~~~~~~~~  807 (954)
T PRK05367        732 --HPVQI-AGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDHYPVL-YTGANGRVAH  807 (954)
T ss_pred             --CccCc-CCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-ccCCCCCccc
Confidence              00000 0000 0011111111122 11  12223333455666777777789999999997732332 222322    


Q ss_pred             -cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 047983          150 -SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFY  226 (233)
Q Consensus       150 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l  226 (233)
                       .++-+         .  +++...++  +.+.+.+.|.++|+...- ..|...+.+|++...  +.++++..++.|.++.
T Consensus       808 e~i~~~---------~--~~~~~~g~--~~~di~krL~d~G~~~~t-~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~  873 (954)
T PRK05367        808 ECILDL---------R--PLKESTGI--TVDDIAKRLIDYGFHAPT-MSFPVAGTLMVEPTESESKAELDRFCDAMIAIR  873 (954)
T ss_pred             ceEEEe---------e--cccccCCC--CHHHHHHHHHHCCCeEee-cCCccCCEEEEEeeecCCHHHHHHHHHHHHHHH
Confidence             12222         1  11110022  334455556788998754 335556788888875  7889999888888887


Q ss_pred             HHHhh
Q 047983          227 YRHAK  231 (233)
Q Consensus       227 ~~~~~  231 (233)
                      ++...
T Consensus       874 ~e~~~  878 (954)
T PRK05367        874 AEIDE  878 (954)
T ss_pred             HHHHH
Confidence            76643

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=97.67  E-value=0.0035  Score=55.86  Aligned_cols=192  Identities=16%  Similarity=0.114  Sum_probs=109.7

Q ss_pred             hHHHHHHHcCcEEEEccccCc----ccc---CCCccccccc----cCCccCEEEEccCccccCCC-CceEEEEEecCCCc
Q 047983            2 CIEETTKKLGIMVIADEVYGH----LVF---GNTHFVPMGV----FGSIVPVLTLGSISKRWIVP-GWRLGWLVTSDPNG   69 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~----~~~---~~~~~~~~~~----~~~~~~~i~~~s~sK~~~~~-G~R~G~~~~~~~~~   69 (233)
                      +|.++|++||+.||+|-+...    |+-   ++-.-.++..    +-..-. .++.|..|.++.| |   |+++..++ +
T Consensus       195 ~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD-~~~~S~~Kd~~~~~G---G~l~~~d~-~  269 (450)
T TIGR02618       195 EVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYAD-GCTMSGKKDCLVNIG---GFLCMNDD-E  269 (450)
T ss_pred             HHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCc-EEEEeeccCCCCCCc---eEEEeCCH-H
Confidence            688999999999999998865    221   0111112311    111111 3788999987776 6   77776663 4


Q ss_pred             cccccchhhhhhhhhHHhhhhh----hhh-ccCcchHH--HHHHHHhhhcHHHHHHH-HHHHHHHHHHHHHHHhhcCCCc
Q 047983           70 ILQDLGVAFFHSISLNMRMDDY----LLL-SESVYTTV--GAVPQILEKTEEEFFSK-ITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~--~~~~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                      +++              +++..    -.+ +.+.....  ++++.-+..    .++. ..+.-..+.++|.+.|++. ++
T Consensus       270 l~~--------------k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e----~~~~~y~~~r~~~a~~La~~L~~~-Gv  330 (450)
T TIGR02618       270 MFQ--------------SAKELVVVFEGMPSYGGLAGRDMEAMAIGIRE----AVDYEYIEHRVKQVRYLGDKLKAA-GV  330 (450)
T ss_pred             HHH--------------HHHHHhhhcCCccccCchhhhhHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            443              33322    111 11111111  233322222    2221 2222233567888888887 66


Q ss_pred             ccccCCCccEEEEEecCCCccccccccccc-CCC----CChHHHHHHHHhccCEEEECCcccC-C------------CCc
Q 047983          142 TCPKKPEGSMFVMYCGSEDKCLLKLNYSLL-EGI----NSDTEFALKLAKEESIIVLPGITVG-L------------KDW  203 (233)
Q Consensus       142 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~ll~~~gi~v~pg~~f~-~------------~~~  203 (233)
                      .+ ..|.||.-++           ++...+ +++    -+...++..+..+.||.-.--+.+. +            -..
T Consensus       331 pv-~~p~ggh~V~-----------vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el  398 (450)
T TIGR02618       331 PI-VEPVGGHAVF-----------LDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLEL  398 (450)
T ss_pred             cc-cCCCCcceEE-----------EEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccce
Confidence            65 5677877777           333321 122    1366778888889999876533331 1            156


Q ss_pred             EEEEeec---CHHHHHHHHHHHHHHHHHH
Q 047983          204 LRITFAV---EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       204 ~Rl~~~~---~~~~l~~~~~~l~~~l~~~  229 (233)
                      +|+++.-   +.+.++...+++..+.++.
T Consensus       399 ~rlaiprr~yt~~h~~~v~~~~~~~~~~~  427 (450)
T TIGR02618       399 VRLTIPRRVYTYAHMDVVADGIIKLYKHR  427 (450)
T ss_pred             eeeccccccccHhHHHHHHHHHHHHHhhH
Confidence            9999983   7888999999998877654

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=97.65  E-value=0.00085  Score=62.97  Aligned_cols=191  Identities=12%  Similarity=0.071  Sum_probs=96.6

Q ss_pred             hHHHHHHHcCcEEEEccccCcc-ccCCC--cccccccc-CCccCEEEEccCccccCCCCce-EEEEEecCCCccccccch
Q 047983            2 CIEETTKKLGIMVIADEVYGHL-VFGNT--HFVPMGVF-GSIVPVLTLGSISKRWIVPGWR-LGWLVTSDPNGILQDLGV   76 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~-~~~~~--~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~R-~G~~~~~~~~~~~~~~~~   76 (233)
                      +|+++|..++  |++||+|+.. .|.+.  +..++..- ++++.++++.|..|..  +++. .+++...+  . ++.   
T Consensus       317 ~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL--~alTQaS~LHvkg--~-vd~---  386 (714)
T PRK15400        317 FIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLL--AAFSQASMIHVKG--D-VNE---  386 (714)
T ss_pred             HHHHHhCCCC--EEEEccchhhhccCcccCCcChhhcCCCCCCceEEEEchhhcc--cchhHHhHHHHcC--C-CCH---
Confidence            5788888877  7899999954 44431  11223211 2235679999999973  3333 33444433  1 211   


Q ss_pred             hhhhhhhhHHhhhhhhh--hccCcchHH-H---HHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHHhhcCCC------ccc
Q 047983           77 AFFHSISLNMRMDDYLL--LSESVYTTV-G---AVPQILEK-TEEEFFSKITDILREAADICCDRLKEIPC------ITC  143 (233)
Q Consensus        77 ~~~~~~~~~~~~~~~~~--~~~~~~~~~-~---~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~------~~~  143 (233)
                               .++.....  .+++|+.+. +   ..+++++. .+.+.++    ...+....+++.+.++++      +..
T Consensus       387 ---------~~~n~a~~m~~STSPsY~l~ASLD~a~~~m~~~~G~~l~~----~~i~~a~~~R~~l~~~~~~~~~w~~~~  453 (714)
T PRK15400        387 ---------ETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLIN----GSIERAIKFRKEIKRLRTESDGWFFDV  453 (714)
T ss_pred             ---------HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHHHhCCCcccCceEEe
Confidence                     33333322  133444443 2   22333322 2333333    334444444555544433      222


Q ss_pred             ccCCC-----------------------ccEEEEEecCCCccccccccccc--------CCCCChHHHHHHHHhccCEEE
Q 047983          144 PKKPE-----------------------GSMFVMYCGSEDKCLLKLNYSLL--------EGINSDTEFALKLAKEESIIV  192 (233)
Q Consensus       144 ~~~~~-----------------------~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ll~~~gi~v  192 (233)
                      + .|+                       .+++.+     ||.++.+..+..        .++  +...+.+.|.++||.+
T Consensus       454 ~-~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~l-----DP~Klti~tpgi~~~g~~~~~Gi--pg~~v~~~L~e~gI~~  525 (714)
T PRK15400        454 W-QPDHIDTTECWPLRSDSTWHGFKNIDNEHMYL-----DPIKVTLLTPGMKKDGTMSDFGI--PASIVAKYLDEHGIVV  525 (714)
T ss_pred             c-ChhhcccchhcccCccccccCccccccccccc-----CCceEEEEeCCCCCCccccccCC--CHHHHHHHHHHcCCEE
Confidence            1 111                       011222     677766655432        123  4566777789999998


Q ss_pred             ECCcccCCCCc--EEEEeecCHHHHHHHHHHHHHHHH
Q 047983          193 LPGITVGLKDW--LRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       193 ~pg~~f~~~~~--~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                      --.+.    ..  +=++++.++++++.+++.|.++-+
T Consensus       526 E~~d~----~~iLfl~s~g~t~~~~~~L~~aL~~f~~  558 (714)
T PRK15400        526 EKTGP----YNLLFLFSIGIDKTKALSLLRALTDFKR  558 (714)
T ss_pred             EecCC----CeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            64332    33  334555578888888877776644

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=97.63  E-value=0.003  Score=56.52  Aligned_cols=56  Identities=18%  Similarity=0.306  Sum_probs=40.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEe
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVT   64 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~   64 (233)
                      ++|.++|+++|+++|+|.++.....    ..++ .++.   -+++.|++|.++..|--+|-+++
T Consensus       175 ~~I~~la~~~gi~livD~t~a~g~~----~~p~-~~Ga---Divv~S~~K~l~G~gd~~gG~vv  230 (437)
T PRK05613        175 PAVAEVAHRNQVPLIVDNTIATAAL----VRPL-ELGA---DVVVASLTKFYTGNGSGLGGVLI  230 (437)
T ss_pred             HHHHHHHHHcCCeEEEECCCccccc----cChH-HhCC---CEEEeeccceecCCCcceeEEEE
Confidence            4789999999999999999865221    1122 2333   38899999998877766666555

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=97.62  E-value=0.0011  Score=57.96  Aligned_cols=57  Identities=19%  Similarity=0.122  Sum_probs=47.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecC
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD   66 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~   66 (233)
                      +||+.+|+++++.+++|-+++-    |.-+..+..++.+   ++..|..|.||.||  +|++.+++
T Consensus       201 ~EI~~icr~~~v~v~~DaAQav----G~i~vDV~eln~D---~~s~s~HK~ygp~~--iGaLYvr~  257 (428)
T KOG1549|consen  201 KEIVKICREEGVQVHVDAAQAV----GKIPVDVQELNAD---FLSISAHKIYGPPG--IGALYVRR  257 (428)
T ss_pred             HHHHHHhCcCCcEEEeehhhhc----CCccccHHHcCch---heeeecccccCCCc--ceEEEEcc
Confidence            5899999999999999999987    4444455555554   77889999999999  99999986

>PRK12566 glycine dehydrogenase; Provisional

Probab=97.62  E-value=0.0029  Score=60.93  Aligned_cols=203  Identities=11%  Similarity=0.065  Sum_probs=108.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC----CCceEEEEEecCCCccccccchh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV----PGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      +|+++|+++|+.+++|-+...-.   ........++.+   |+.+++.|+|+.    .|.=+|.+.+.+  .+.   .++
T Consensus       662 eI~~iah~~Galv~vDgA~~~a~---~~l~~Pg~~GAD---i~~~s~HKtf~~P~G~GGP~vG~iav~~--~L~---pfL  730 (954)
T PRK12566        662 EICEVVHQHGGQVYMDGANLNAQ---VGLARPADIGAD---VSHMNLHKTFCIPHGGGGPGMGPIGVRA--HLA---PFV  730 (954)
T ss_pred             HHHHHHHHcCCEEEEEeeChhhc---cCCCChhhcCCC---EEEecCCcccCcCccCCCCccchhhhhh--hhh---hhc
Confidence            68999999999999999885211   111112334443   888999998752    233356655554  111   122


Q ss_pred             hhhh-hhhH-HhhhhhhhhccCcchH---HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEE
Q 047983           78 FFHS-ISLN-MRMDDYLLLSESVYTT---VGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMF  152 (233)
Q Consensus        78 ~~~~-~~~~-~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~  152 (233)
                      ..+. .... .+.+. ...+.....+   +.+...++..-+.+ +.+....-..+.+++.+.|.+..... +.++++.+|
T Consensus       731 p~~P~~d~~G~~~r~-ga~S~~~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~~~~v~-~~~~~~~~~  807 (954)
T PRK12566        731 ANHPVVPVEGPDPNN-GAVSAAPWGSASILPISWMYIAMMGPQ-LADASEVAILSANYLANQLGGAFPVL-YRGRNERVA  807 (954)
T ss_pred             cCCCCcCCCCCCCCC-CceeecccchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHhhCCCC-cCCCCCCee
Confidence            1110 0000 00111 1111111222   11112222222445 77777777889999999997732332 222222222


Q ss_pred             EEEecCCCccccccccccc---CCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 047983          153 VMYCGSEDKCLLKLNYSLL---EGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~  227 (233)
                      --         ..+....+   .++ +..+...+++ ++||...- ..|...+.+|++...  +.++++..++.|.++.+
T Consensus       808 hE---------fii~~~~l~~~~g~-~~~dvakRL~-d~Gihapt-~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~  875 (954)
T PRK12566        808 HE---------CILDLRPLKAQTGI-SEEDVAKRLM-DYGFHAPT-MSFPVPGTLMVEPTESESKAELDRFVEAMLSIRA  875 (954)
T ss_pred             eE---------EEEEccccccccCC-CHHHHHHHHH-HCCcEEeE-EeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHH
Confidence            21         11222211   123 2445555555 88987544 355557899998885  78899999999988887


Q ss_pred             HHh
Q 047983          228 RHA  230 (233)
Q Consensus       228 ~~~  230 (233)
                      +..
T Consensus       876 e~~  878 (954)
T PRK12566        876 EIG  878 (954)
T ss_pred             HHH
Confidence            753

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=97.56  E-value=0.0022  Score=52.94  Aligned_cols=198  Identities=13%  Similarity=0.097  Sum_probs=111.7

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      .++++|++++++++..-+|.-    |.-+.+...+..+   +.++|=.|++. +--++|.+..+.  ++-+  .+.+-+.
T Consensus       177 kva~ic~e~gvPlllN~AYt~----Grmpvs~ke~g~D---FiVgSGHKsmA-As~PiGvl~~~e--E~ae--~V~r~Sg  244 (382)
T COG1103         177 KVAKICREYGVPLLLNCAYTV----GRMPVSGKEIGAD---FIVGSGHKSMA-ASAPIGVLAMSE--EWAE--IVLRRSG  244 (382)
T ss_pred             HHHHHHHHcCCceEeecceee----ccccccccccCCC---EEEecCccchh-ccCCeeEEeehh--HHHH--HHHhhcc
Confidence            578999999999999999997    4344455555554   88999999954 455899999887  3332  1111000


Q ss_pred             h-hhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-ccCCCccEEEEEecCC
Q 047983           82 I-SLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITC-PKKPEGSMFVMYCGSE  159 (233)
Q Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~g~~~~~~~~~  159 (233)
                      . .+...+ .+...++...+....+|+.  ....+..++.-+.+ ++.+++.+.|++++++.. -..|..--.+.     
T Consensus       245 ~~~~~KEv-ellGCT~rGapivTlmASf--P~V~eRVkrWdeEv-~kaR~fv~elEkigg~~qlG~rPk~HdLm~-----  315 (382)
T COG1103         245 RAFPKKEV-ELLGCTVRGAPIVTLMASF--PHVVERVKRWDEEV-EKARWFVAELEKIGGVKQLGERPKNHDLMK-----  315 (382)
T ss_pred             ccccccee-eeecccccCchHHHHHhcC--HHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHhCCCCcccceee-----
Confidence            0 000000 0111122222222333332  11122222222222 345677788888764331 12343322222     


Q ss_pred             Cccccccccccc----CCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLL----EGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       160 ~~~~~~~~~~~~----~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l~~~l~~~  229 (233)
                            +..+.+    .......-|+++-|+++||.-+   .-|...|+.+|.-. +.|+++...+.++++++++
T Consensus       316 ------Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI---~~G~Tk~~K~svyGl~~Eqve~V~~afkeI~eky  381 (382)
T COG1103         316 ------FETPVFHEIAKKHKRKGYFLYEELKKRGIHGI---QPGQTKYFKLSVYGLSWEQVEYVVDAFKEIAEKY  381 (382)
T ss_pred             ------ecCchHHHHHHhCcCCceeeHHHHHhcCcccc---ccCceeEEEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence                  222211    0111234578889999998733   33346899998876 8999999999999998775

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=97.54  E-value=0.0039  Score=57.01  Aligned_cols=210  Identities=13%  Similarity=0.088  Sum_probs=106.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++.+|-+|+....-.+.. ..+..+..-  -.+..|..|.+ ..-.-+|.+..++. ...+.+..   
T Consensus       285 ~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~a--DSit~d~HK~l-~~P~g~G~llvr~~-~~~~~~~~---  357 (522)
T TIGR03799       285 DEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERA--DSVTIDAHKQL-YVPMGAGMVLFKDP-ALMSAIEH---  357 (522)
T ss_pred             HHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhC--CEEEEChhhcC-CcCcccEEEEEeCH-HHHHHhcc---
Confidence            479999999999999999999643221111 112222111  15677999953 33355888888763 22221110   


Q ss_pred             hhhhh----HHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEE
Q 047983           80 HSISL----NMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        80 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~  155 (233)
                      +..-+    ...+.. .++..+.+..+..+...+..-+..-++++.+...+.++++.+.|++.+++..+.+|+-+..++ 
T Consensus       358 ~~~Yl~~~~~~d~~~-~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv~F-  435 (522)
T TIGR03799       358 HAEYILRKGSKDLGS-HTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTY-  435 (522)
T ss_pred             CcchhcCCCCCcccc-ceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEEEE-
Confidence            00000    000000 011111222111233333333445678888888999999999998888887655565554443 


Q ss_pred             ecCCCcccccccccc-----cCC----CCChHHHHHHHHhccCEEEECCcccCC-------CCcEEEEeec---CHHHHH
Q 047983          156 CGSEDKCLLKLNYSL-----LEG----INSDTEFALKLAKEESIIVLPGITVGL-------KDWLRITFAV---EPSAFE  216 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~ll~~~gi~v~pg~~f~~-------~~~~Rl~~~~---~~~~l~  216 (233)
                        +-.|..++-....     ...    ...-...+.+.+.+.|...+......+       ...+|+++..   +.++++
T Consensus       436 --r~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~  513 (522)
T TIGR03799       436 --RYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQ  513 (522)
T ss_pred             --EEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHH
Confidence              3211111100000     000    000013445555566666654333321       2459999986   577777


Q ss_pred             HHHHH
Q 047983          217 IGLGR  221 (233)
Q Consensus       217 ~~~~~  221 (233)
                      ..++.
T Consensus       514 ~~l~~  518 (522)
T TIGR03799       514 DILDE  518 (522)
T ss_pred             HHHHH
Confidence            66543

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=97.53  E-value=0.0056  Score=52.56  Aligned_cols=202  Identities=13%  Similarity=0.056  Sum_probs=118.0

Q ss_pred             hHHHHHHHcCcEEEEccccC-ccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYG-HLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++.++|.+.+.++++|-+|- .++-.+..+.|+.   .-  -|+..+..|.  +-|-|-|.|.-.....-.++ +--+-.
T Consensus       208 R~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFe---y~--DiVTTTTHKs--LRGPRg~mIFyRkGvk~~~~-k~g~~i  279 (477)
T KOG2467|consen  208 RFRKIADKVGAYLMADMAHISGLVAAGVIPSPFE---YC--DIVTTTTHKS--LRGPRGAMIFYRKGVKSIKP-KQGKEI  279 (477)
T ss_pred             HHHHHHHhcCceeehhhhhHHHHHhcccCCCccc---cc--ceeecccccc--ccCCcceeEEEeccCCcCCC-CCCCcc
Confidence            46789999999999999997 4443443344442   11  1778888894  56777788776652111110 000000


Q ss_pred             hhhhHHhhhhhhh--hccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLL--LSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                      .-.+-.++.....  +-.+|.... +++|..|+.-....+++..+.+.+|.+.+.++|.+.+--.+ ......-.+.   
T Consensus       280 ~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~Gy~lv-tgGTDnHlvL---  355 (477)
T KOG2467|consen  280 LYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISRGYKLV-TGGTDNHLVL---  355 (477)
T ss_pred             eechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHcCceEe-cCCccceEEE---
Confidence            0001133332211  222222222 66776665555567788888999999999999988632222 2222233333   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-----CCcEEEEeec------CHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-----KDWLRITFAV------EPSAFEIGLGRMKAFY  226 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----~~~~Rl~~~~------~~~~l~~~~~~l~~~l  226 (233)
                              +++... ++  +-..+.+.|+..+|...--..+|.     ++.+|+....      .++++++..+-|.+.+
T Consensus       356 --------vDLr~~-G~--dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av  424 (477)
T KOG2467|consen  356 --------VDLRPK-GV--DGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAV  424 (477)
T ss_pred             --------Eecccc-CC--chHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHHHHHHHHHH
Confidence                    355432 34  677888889888999877666664     6789995432      4667776665555444

>PRK02769 histidine decarboxylase; Provisional

Probab=97.50  E-value=0.014  Score=51.38  Aligned_cols=186  Identities=13%  Similarity=0.055  Sum_probs=104.1

Q ss_pred             ChHHHHHHHcC---cEEEEccccCccccCCC-ccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccch
Q 047983            1 FCIEETTKKLG---IMVIADEVYGHLVFGNT-HFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGV   76 (233)
Q Consensus         1 ~~i~~l~~~~~---~~lI~De~y~~~~~~~~-~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~   76 (233)
                      ++|.++|+++|   +++.+|-+|+.+...-. ...++. ... .--.+..|..|. ++.-..+|.+..++  ..++.+..
T Consensus       180 ~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d-~~~-~vDsis~s~HK~-~~~P~g~G~l~~r~--~~~~~~~~  254 (380)
T PRK02769        180 KEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFS-FAD-GIDSIAISGHKF-IGSPMPCGIVLAKK--KYVERISV  254 (380)
T ss_pred             HHHHHHHHHhCCCceEEEEEecccceeecccCccccCC-ccC-CCCEEEECCccc-CCCCCCcEEEEEeh--hhhhhccc
Confidence            47999999998   79999999997554211 111111 111 222556788997 44445689988887  23321100


Q ss_pred             hhhhhhhhHHhhhhh-hhhccCcchH-HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEE
Q 047983           77 AFFHSISLNMRMDDY-LLLSESVYTT-VGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVM  154 (233)
Q Consensus        77 ~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~  154 (233)
                      -    .   ..+... .++..+.+.. ..++...+.....+-.++..+...+..+++.+.|++. ++..+..|.....++
T Consensus       255 ~----~---~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~-g~~~~~~p~~~~v~f  326 (380)
T PRK02769        255 D----V---DYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN-GIPAWRNPNSITVVF  326 (380)
T ss_pred             C----c---cccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCCceEEEE
Confidence            0    0   000000 0111122221 1333333433344556778888888999999999875 555456676444433


Q ss_pred             EecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          155 YCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                                  +.+       +.+.    .  +|..+.+-     .+++|+++..  +.+.+++.++.|.+.+...
T Consensus       327 ------------~~~-------~~~~----~--~~w~l~~~-----~~~~hi~~~~~~~~~~~~~f~~dl~~~~~~~  373 (380)
T PRK02769        327 ------------PCP-------SERI----W--KKWHLATS-----GNQAHIITMPHHNKQQIDSLIDELIFDLKNP  373 (380)
T ss_pred             ------------cCC-------CHHH----H--hCeeEccc-----CCEEEEEECCCCCHHHHHHHHHHHHHHHhcc
Confidence                        321       2221    1  34444432     2588998885  7778888888887766543

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=97.49  E-value=0.0011  Score=59.68  Aligned_cols=148  Identities=15%  Similarity=0.065  Sum_probs=86.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCC-CccccccccCCccC-EEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGN-THFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~-~~~~~~~~~~~~~~-~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|.++|+++++++.+|-+|+.+...= .+... ....- ++ .-+..++.|. +.+=.-+||+..++.+.+.+.+.+. 
T Consensus       227 ~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~-~~f~l-~~vdSIt~d~HK~-g~aP~~~G~il~rd~e~l~~~~~~~-  302 (460)
T COG0076         227 EELADIAEEYGIWLHVDAAFGGFLLPFLEPDGR-WDFGL-EGVDSITVDGHKY-GLAPIGCGVVLFRDEEALRRILIFA-  302 (460)
T ss_pred             HHHHHHHHHcCCcEEEEccccceeecccCccch-hhcCC-CCceEEEECcccc-cCCCCCceEEEEECHHHhhhhhhcc-
Confidence            479999999999999999999887531 11111 11111 12 2334588997 8888889999999964344321111 


Q ss_pred             hhhhhhHHhhhhhhhhccCcch-HHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEE
Q 047983           79 FHSISLNMRMDDYLLLSESVYT-TVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVM  154 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~  154 (233)
                       ...++.....++ +...+.+. ++.+....+...+.+-.+++.+...+.++++.+.|++.+.+.....|.....++
T Consensus       303 -~~yl~~~~~~~~-ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~f  377 (460)
T COG0076         303 -DYYLPGGGIPNF-TILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAF  377 (460)
T ss_pred             -cccCCCCCcCce-eEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEE
Confidence             000000011111 11111222 223333333334556677888888899999999999987666656676555554

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=97.49  E-value=0.0056  Score=57.57  Aligned_cols=64  Identities=16%  Similarity=0.135  Sum_probs=39.3

Q ss_pred             Cccccccccccc--------CCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLL--------EGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       160 ~~~~~~~~~~~~--------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                      ||.++.+..+..        .++  +...+.+.|+++||.+--.+.+.  --+=++++.++++++.+++.|.++-+
T Consensus       487 DP~KltI~t~g~~~~g~~~~~Gi--~g~~l~~~L~e~gI~~E~~d~~~--vL~l~s~g~t~~~~~~L~~aL~~f~~  558 (713)
T PRK15399        487 DPVKVTILTPGMDEQGNMSEEGI--PAALVAKFLDERGIVVEKTGPYN--LLFLFSIGIDKTKAMGLLRGLTEFKR  558 (713)
T ss_pred             CCceEEEEecCcccccccccCCC--CHHHHHHHHHHcCCEEEecCCCe--EEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            677766655422        133  55667777899999986533211  11234555578888888887777644

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=97.47  E-value=0.0037  Score=53.43  Aligned_cols=179  Identities=15%  Similarity=0.050  Sum_probs=94.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCc--cccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGH--LVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~--~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|.++|++||+.|-.|=+=-.  .+..+   .+.+.+...-. ++..++||..+.|+   |-|+.-+. ++++++    
T Consensus       153 ~~i~~~~k~~~l~LHmDGAR~~nA~valg---~~~~~~~~~~D-~v~~~~tK~g~~~~---gAiv~gn~-~~~~~a----  220 (342)
T COG2008         153 EAISAVCKEHGLPLHMDGARLANALVALG---VALKTIKSYVD-SVSFCLTKGGGAPV---GAIVFGNR-DFAKRA----  220 (342)
T ss_pred             HHHHHHHHHhCCceeechHHHHHHHHHcC---CCHHHHHhhCC-EEEEecccCCccee---eeEEEcCH-HHHHHH----
Confidence            3688999999999999865322  12122   22322222222 55668899855454   88887764 455422    


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHH----HHHHHHhhhcHHHHHHHHHHHHHHH--HHHHHHHhhcCCCcccccCCCccEE
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTV----GAVPQILEKTEEEFFSKITDILREA--ADICCDRLKEIPCITCPKKPEGSMF  152 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~~~L~~~~~~~~~~~~~~g~~  152 (233)
                             .+.+.+..   ....+.    +....++++..     ........|  ...|.+.++..++.....+|+ ...
T Consensus       221 -------~~~rK~~G---gl~~k~r~laA~~~~~l~~~~-----~~~~~~Han~mA~~La~~~~~~~G~~~~~~~~-tN~  284 (342)
T COG2008         221 -------RRWRKRAG---GLMRKARFLAAQGLYALEDDV-----WRLAADHANAMAARLAEGLEAKPGVKLAFPVE-TNM  284 (342)
T ss_pred             -------HHHHHHhc---ccHhhhhHHHHHHHHHHhccH-----HHHHHHHHHHHHHHHHHhhhhcCCceeccCCc-ccE
Confidence                   12222211   222333    22222232221     122333344  777788888766777533344 444


Q ss_pred             EEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHH
Q 047983          153 VMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l  226 (233)
                      ++         +.++...   +  +.......+.+.|+.+.+++     .-+|+..+  .+++++++.+..+++++
T Consensus       285 vf---------~~l~~~~---i--~~l~~~~~~~~~~~~~~~~~-----~~vRfvts~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         285 VF---------VRLPESA---I--EALRLAGALFYRGVLIGAHG-----EIVRFVTSWATSEEDVDELVAAIKALL  341 (342)
T ss_pred             EE---------EECChHH---H--HHHHhhchhheeeeeccCCC-----ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence            44         3454221   0  22333334445666666543     35777555  58999998888887654

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=97.47  E-value=0.0046  Score=56.21  Aligned_cols=201  Identities=15%  Similarity=0.126  Sum_probs=109.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|++.+..+++|+..||++.-..... +..+-.+.+ ...+++..|..|. ..+.....++...+. ..+    ..   
T Consensus       185 ~~i~~~~~~~~a~v~~deah~~~~~~~-~~l~~~~~~-~~~~~~tqS~HK~-l~alSQaS~iHv~~~-~~~----~~---  253 (557)
T COG1982         185 RKIVELLHHYGAWVLYDEAHPAHFDFS-PMLPESALN-GGADFVTQSTHKL-LAALSQASMIHVKDG-RAV----NH---  253 (557)
T ss_pred             HHHHHHHhhcCceEEhhhcCccccccc-ccCcchhhh-cCceEEEechhhh-hhhhhhhHHHhhCCC-ccC----CH---
Confidence            368899999999999999998643221 111112222 3567999999998 555656666766652 111    11   


Q ss_pred             hhhhHHhhhhhhhh--ccCcchHH-HHH--HHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC------
Q 047983           81 SISLNMRMDDYLLL--SESVYTTV-GAV--PQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPE------  148 (233)
Q Consensus        81 ~~~~~~~~~~~~~~--~~~~~~~~-~~~--~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~------  148 (233)
                           .++.....+  +++|+.+. +.+  +++.... +.+-.++..+..-+.++.+++..++++++..+.++.      
T Consensus       254 -----~r~nea~~~h~STSPsY~l~ASlD~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (557)
T COG1982         254 -----ERFNEALMMHQSTSPSYPLMASLDVARMQEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTG  328 (557)
T ss_pred             -----HHHHHHHHHHccCCchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccccCCccc
Confidence                 444443332  33333333 211  3333222 333333334444455555555555555444332221      


Q ss_pred             --------ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHH
Q 047983          149 --------GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLG  220 (233)
Q Consensus       149 --------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~  220 (233)
                              ...|+.     ||.++.+..+.. |+  ....+...|+++|++..-.+.    ..+=+.+.....+....++
T Consensus       329 whgf~~~~~~~~~l-----DP~Klti~tp~~-Gi--pg~~v~~~L~e~gii~e~~~d----~~~lll~~~~~gk~~~lv~  396 (557)
T COG1982         329 WHGFEDYADDQYFL-----DPTKLTITTPEF-GI--PGAIVAKYLREHGIIPEETGD----YSNLLLFSPGIGKWQTLVD  396 (557)
T ss_pred             ccccccccccceec-----cccEEEEecCCC-CC--cHHHHHHHHHHcCCeeeecCC----ceeeEEeeeccchHHHHHH
Confidence                    125555     777766665432 55  677788888888988765332    2222333332255566777


Q ss_pred             HHHHHHHHH
Q 047983          221 RMKAFYYRH  229 (233)
Q Consensus       221 ~l~~~l~~~  229 (233)
                      +|.++.+.+
T Consensus       397 ~L~~f~r~~  405 (557)
T COG1982         397 RLLEFKRRY  405 (557)
T ss_pred             HHHHHHHhh
Confidence            777777654

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=97.38  E-value=0.017  Score=49.86  Aligned_cols=58  Identities=19%  Similarity=0.282  Sum_probs=44.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecC
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD   66 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~   66 (233)
                      |.|+++|+++++++|+|..+..=.+    ..|+. .+.+   |++.|+||..|.-|--+|-++...
T Consensus       167 e~ia~iAh~~gvpliVDNT~atpyl----~rP~~-hGAD---IVvHS~TK~igGhGt~iGG~iVD~  224 (426)
T COG2873         167 EAIAEIAHRHGVPLIVDNTFATPYL----CRPIE-HGAD---IVVHSATKYIGGHGTAIGGVIVDG  224 (426)
T ss_pred             HHHHHHHHHcCCcEEEecCCCccee----cchhh-cCCC---EEEEeecccccCCccccceEEEeC
Confidence            5789999999999999998875211    11222 2232   889999999999999999988866

>PRK05367 glycine dehydrogenase; Provisional

Probab=97.35  E-value=0.0093  Score=58.22  Aligned_cols=187  Identities=16%  Similarity=0.165  Sum_probs=104.8

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccc-----cCCCCceEEEEEecCCCccccccch
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKR-----WIVPGWRLGWLVTSDPNGILQDLGV   76 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-----~~~~G~R~G~~~~~~~~~~~~~~~~   76 (233)
                      +|+++|+++|+++++|-....+...    .+...++.+   |+++|.-|.     ||+||  .|++.+++  ++.+.|.-
T Consensus       226 ~i~~~ah~~Gal~~vda~~~Al~~l----~~pge~GaD---i~vgs~qkfg~P~g~GGP~--aGflavr~--~~~r~lpg  294 (954)
T PRK05367        226 ALIAAAHARGALVAVAADLLALTLL----TPPGEMGAD---IAVGSAQRFGVPMGFGGPH--AAYFAVRD--AYKRSMPG  294 (954)
T ss_pred             HHHHHHHHcCCEEEEEehhhhccCC----CChhhcCCC---EEEeeCcccCCCCCCCCCC--EEEEEECH--HHHhhCCC
Confidence            6899999999999997533222111    123334444   788888887     78887  89999987  45443321


Q ss_pred             hhhhh----hhhHHhhh-------hhhh---hccCcch-HH--HHHHHH-hhhcHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 047983           77 AFFHS----ISLNMRMD-------DYLL---LSESVYT-TV--GAVPQI-LEKTEEEFFSKITDILREAADICCDRLKEI  138 (233)
Q Consensus        77 ~~~~~----~~~~~~~~-------~~~~---~~~~~~~-~~--~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  138 (233)
                      . +..    ......++       +.+.   .+++..+ ++  +.++.+ +.-....=++++.++...+..++.+.|+..
T Consensus       295 r-ivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~  373 (954)
T PRK05367        295 R-IVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRAL  373 (954)
T ss_pred             C-eeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            1 010    00000000       0001   1112221 11  233332 111233446777888899999999999774


Q ss_pred             CCcccccCCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHH
Q 047983          139 PCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFE  216 (233)
Q Consensus       139 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~  216 (233)
                       ++.....   .+|-.         +.+..+.      +.+.+.+.|.++||.+..   .+ .+.+|+|+..  ++++++
T Consensus       374 -G~~~~~~---~~f~~---------~~~~~~~------~~~~i~~~l~~~gi~~~~---~~-~~~l~is~~e~~t~~did  430 (954)
T PRK05367        374 -GLEVVHD---SFFDT---------LTVEVGG------DAAAVLARALAAGINLRR---VD-DDHVGISLDETTTREDLA  430 (954)
T ss_pred             -CcccCCC---CCCCe---------EEEeCCC------CHHHHHHHHHHCCceecc---cc-CCEEEEEecccCCHHHHH
Confidence             4443222   22222         3233221      445556666788999832   11 4679999985  788899


Q ss_pred             HHHHHHH
Q 047983          217 IGLGRMK  223 (233)
Q Consensus       217 ~~~~~l~  223 (233)
                      ..++.|.
T Consensus       431 ~l~~~l~  437 (954)
T PRK05367        431 ALLAVFG  437 (954)
T ss_pred             HHHHHHc
Confidence            8888886

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=97.34  E-value=0.0033  Score=54.82  Aligned_cols=176  Identities=21%  Similarity=0.167  Sum_probs=80.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccC--ccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSI--SKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~--sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|.++|+++|++||+|-+++....-...  +....+  +  +.+.||  +|.....  --|.++++++ ++.+.+...+
T Consensus       130 ~~i~~~~~~~~i~lIeD~a~a~g~~~~g~--~~G~~g--d--~~~fSf~~~K~i~~g--eGG~v~~~~~-~~~~~~~~~~  200 (363)
T PF01041_consen  130 DAIRAIARKHGIPLIEDAAQAFGARYKGR--PVGSFG--D--IAIFSFHPTKIITTG--EGGAVVTNDP-ELAERARALR  200 (363)
T ss_dssp             HHHHHHHHHTT-EEEEE-TTTTT-EETTE--ETTSSS--S--EEEEESSTTSSS-SS--S-EEEEESTH-HHHHHHHHHT
T ss_pred             HHHHHHHHHcCCcEEEccccccCceeCCE--eccCCC--C--ceEecCCCCCCCcCC--CCeeEEecHH-HHHHHhhhhh
Confidence            36899999999999999999975432211  111122  2  455565  6865322  2288888774 3333221111


Q ss_pred             hhhhhhHHhhhhhhhhc-cCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccE-EEEE
Q 047983           79 FHSISLNMRMDDYLLLS-ESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSM-FVMY  155 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~-~~~~  155 (233)
                      .+.... .....+.... .+.+... ...+++...+ -+.+++..+.-+++.+.+.+.|..++++..+..+.+.. ..|+
T Consensus       201 ~~g~~~-~~~~~~~~~~~~g~n~rm~~~~AAigl~Q-L~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~  278 (363)
T PF01041_consen  201 NHGRSR-DAFRRYRHELPPGYNFRMSELQAAIGLAQ-LKRLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYY  278 (363)
T ss_dssp             BTTEET-SECSTTEESSSS--B-B-BHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCES
T ss_pred             ccCcCc-cccccccccccCCcccccHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHhcCCCcccccccccccccccc
Confidence            111000 0000000000 1111111 2222221111 13455556666677788888888876653222233221 1110


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCc
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGI  196 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~  196 (233)
                      .+     .+.++...  .  .+.+.+.+.|++.||...+..
T Consensus       279 ~f-----~i~~~~~~--~--~~rd~l~~~L~~~GI~~~~~~  310 (363)
T PF01041_consen  279 RF-----PIRLPDEA--L--ADRDELVEALRARGIETRPHY  310 (363)
T ss_dssp             SE-----EEEETCCG--C--STHHHHHHHHHHTTBEEBCST
T ss_pred             cc-----cccccccc--c--chHHHHHHHHHHCCCcccccc
Confidence            00     02233211  0  157777888889999998855

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=97.32  E-value=0.017  Score=50.70  Aligned_cols=99  Identities=15%  Similarity=0.088  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCcccccC-C--CccEEEEEecCCCcccccccccccCCCCCh-----HHHHHHHHhcc
Q 047983          117 FSKITDILREAADICCDRLKEIPCITCPKK-P--EGSMFVMYCGSEDKCLLKLNYSLLEGINSD-----TEFALKLAKEE  188 (233)
Q Consensus       117 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ll~~~  188 (233)
                      ++.+.++.+++++.+++.+++++.+..+.. +  .+.....         +.++.+....+..+     ...+.+.|+++
T Consensus       261 le~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~---------v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  331 (374)
T TIGR01365       261 LKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVC---------LKVVDPAIDALDEDAQADFAKELISTLEKE  331 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEE---------EEeCCccccccccchhhHHHHHHHHHHHHC
Confidence            788899999999999999999863432221 1  1222222         23322210000002     45677888888


Q ss_pred             CEEEECCcccCCCCcEEE-Eeec-CHHHHHHHHHHHHH
Q 047983          189 SIIVLPGITVGLKDWLRI-TFAV-EPSAFEIGLGRMKA  224 (233)
Q Consensus       189 gi~v~pg~~f~~~~~~Rl-~~~~-~~~~l~~~~~~l~~  224 (233)
                      ||.+-+|..--....+|| +++. +.++++.++..|.=
T Consensus       332 gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~  369 (374)
T TIGR01365       332 GVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDW  369 (374)
T ss_pred             CEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHH
Confidence            999988765433578999 4554 88999988888753

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=97.29  E-value=0.04  Score=46.54  Aligned_cols=197  Identities=14%  Similarity=0.054  Sum_probs=105.3

Q ss_pred             HHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC-CCceEEEEEecCCCccccccchhhhhh
Q 047983            3 IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         3 i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +-++|++|++.+++|-+-+.-   + ..  + .+|.+..-+.+..--|+.++ ||+-+  +..++.  -.+  ++.+-++
T Consensus       165 ~g~lc~k~~~lllVD~VaSlg---g-t~--F-~mDewgVDvaytgSQKaL~aP~GLsi--isfS~k--a~~--~~~~rK~  231 (385)
T KOG2862|consen  165 SGELCHKHEALLLVDTVASLG---G-TE--F-EMDEWGVDVAYTGSQKALGAPAGLSI--ISFSDK--ALE--AIRDRKT  231 (385)
T ss_pred             HHHHhhcCCeEEEEechhhcC---C-cc--c-eehhhcccEEEecchhhcCCCCCcce--eecCHH--HHH--HHhhccC
Confidence            468999999999999998762   2 21  2 24555544666677888766 45444  444441  111  1111000


Q ss_pred             ---hhhH--Hhhhhhhh-------hccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC
Q 047983           82 ---ISLN--MRMDDYLL-------LSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE  148 (233)
Q Consensus        82 ---~~~~--~~~~~~~~-------~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  148 (233)
                         ....  .++..+..       +--.++.+. .++-+.|..-.++=+++..++-++..+++...|++++-..+ ...+
T Consensus       232 ~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~f-v~~e  310 (385)
T KOG2862|consen  232 KPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQLF-VVDE  310 (385)
T ss_pred             CceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccce-ecCh
Confidence               0000  11111111       011223333 33333332224455667778888888999999988532111 1111


Q ss_pred             c---cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhcc-CEEEECCcccCC--CCcEEEEeec---CHHHHHHHH
Q 047983          149 G---SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEE-SIIVLPGITVGL--KDWLRITFAV---EPSAFEIGL  219 (233)
Q Consensus       149 ~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-gi~v~pg~~f~~--~~~~Rl~~~~---~~~~l~~~~  219 (233)
                      .   .-.-.         +.+|.    ++  |...+...+..+ ++.+.  .+.++  ..++||.+..   +.+.++...
T Consensus       311 ~~rlptvtt---------v~vp~----gv--Dw~dVv~~~~~~~~vei~--gglg~~~gKv~RIGl~gcna~~e~i~~v~  373 (385)
T KOG2862|consen  311 ELRLPTVTT---------VKVPY----GV--DWKDVVAYAMSHYVVEIG--GGLGPTVGKVFRIGLLGCNANVEYIDNVV  373 (385)
T ss_pred             hhccCccee---------eecCC----CC--CHHHHHHHHHHhcCEEec--cccCCCcccEEEEEEeeccCCcHHHHHHH
Confidence            1   11111         33443    33  555555555555 55553  34444  6899998763   688899999


Q ss_pred             HHHHHHHHHHh
Q 047983          220 GRMKAFYYRHA  230 (233)
Q Consensus       220 ~~l~~~l~~~~  230 (233)
                      +.|+..+.+.+
T Consensus       374 ~ll~~alq~~~  384 (385)
T KOG2862|consen  374 ELLKLALQRKK  384 (385)
T ss_pred             HHHHHHHhhcc
Confidence            99998887654

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=97.28  E-value=0.0051  Score=55.29  Aligned_cols=61  Identities=21%  Similarity=0.054  Sum_probs=40.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCC-----Ccc--ccccccCCccCEEEEccCccccCCCCceEEEEEecC
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGN-----THF--VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD   66 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~-----~~~--~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~   66 (233)
                      ++|+++|++||+++|+|...+.+...+     ..+  ......+.   -+++.|.+|.+++|  ..|++++++
T Consensus       235 ~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~Ga---Div~fSg~K~LgGp--~~G~i~g~~  302 (454)
T TIGR00474       235 AELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGV---DLVTFSGDKLLGGP--QAGIIVGKK  302 (454)
T ss_pred             HHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCC---CEEEecCccccCCC--eEEEEEECH
Confidence            478999999999999998644431110     111  11112223   28899999988766  479999887

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK06434 cystathionine gamma-lyase; Validated

Probab=97.12  E-value=0.025  Score=49.81  Aligned_cols=112  Identities=12%  Similarity=0.044  Sum_probs=61.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++++  +++|.++..-.    ...++. ...+   +++.|.+|.++.+| .=-|.+++.++ ++.        
T Consensus       168 ~~I~~la~~~~--lvVD~t~~s~~----~~~pl~-~gaD---ivv~S~tK~i~G~~d~~gG~vv~~~~-~~~--------  228 (384)
T PRK06434        168 KNVSSFCHEND--VIVDATFASPY----NQNPLD-LGAD---VVIHSATKYISGHSDVVMGVAGTNNK-SIF--------  228 (384)
T ss_pred             HHHHHHHHHcC--eEEECCCCCcc----cCCchh-cCCC---EEEeecccccCCCCCceEEEEecCcH-HHH--------
Confidence            37899999998  45699974311    111232 2232   88899999887644 43466666442 222        


Q ss_pred             hhhhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           80 HSISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        80 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                            .+++... ..+...++..+   .++ ...-+.+..+.++-.++...+.+.|+..|.+
T Consensus       229 ------~~~~~~~~~~G~~~~~~~A---~l~-~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v  281 (384)
T PRK06434        229 ------NNLVERRKTLGSNPDPIQA---YLA-LRGLKTLGLRMEKHNKNGMELARFLRDSKKI  281 (384)
T ss_pred             ------HHHHHHHHhcCCCCCHHHH---HHH-HhCCCcHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence                  3333221 22222222212   221 1122345666677788888888888887654

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=97.11  E-value=0.031  Score=46.97  Aligned_cols=190  Identities=13%  Similarity=0.167  Sum_probs=106.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      .+++..+.+|-..|.||+...|..-|.+...   ...++-+--|-++.|. ...|.+++.+++.+        ++.    
T Consensus       234 ~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWa---fq~y~fiPDIVtmgKp-mGNGhPVa~Vattk--------eIA----  297 (452)
T KOG1403|consen  234 AVADAVRSAGGVCIADEVQVGFGRVGSHYWA---FQTYNFIPDIVTMGKP-MGNGHPVAAVATTK--------EIA----  297 (452)
T ss_pred             HHHHHHhcCCCeEEeehhhhcccccchhhhh---hhhhccccchheeccc-CCCCCeeeEEeccH--------HHH----
Confidence            3566778899999999999998766655433   3333334446688999 77899999999987        333    


Q ss_pred             hhhHHhhh-----hhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCCccEEEEE
Q 047983           82 ISLNMRMD-----DYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE-IPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        82 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~  155 (233)
                          +.+.     .+++++.+|.+-+.+++-+ ..-.++.++...+.+.+....+...++. .+.+.. +.. -|.|+- 
T Consensus       298 ----~Af~atgv~YFNTyGGnPVsCAv~laVm-~v~e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGD-vRG-vGLFiG-  369 (452)
T KOG1403|consen  298 ----QAFHATGVEYFNTYGGNPVSCAVGLAVM-RVCEDENLQEHAQQVGEKLEVLLRRLKQKHECIGD-VRG-VGLFIG-  369 (452)
T ss_pred             ----HHhccccceehhccCCCchhHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHHhhhccceec-ccc-ceEEEe-
Confidence                3332     2233433333332333333 2234456666666777766666666655 322221 122 366665 


Q ss_pred             ecCCCccccccccccc--CCCCC--hH-HHHHHHHhccCEEEECCcccCC-CCcEEE--EeecCHHHHHHHHHHHHHHHH
Q 047983          156 CGSEDKCLLKLNYSLL--EGINS--DT-EFALKLAKEESIIVLPGITVGL-KDWLRI--TFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~--~~~~~--~~-~~~~~ll~~~gi~v~pg~~f~~-~~~~Rl--~~~~~~~~l~~~~~~l~~~l~  227 (233)
                                +++-+-  ....+  .. -.+.++-+.++|++..-   |+ .+-+.+  .++.++++.++.+..|.++|.
T Consensus       370 ----------IdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaD---GPh~NilKiKPPmCFneena~e~v~~ld~iLT  436 (452)
T KOG1403|consen  370 ----------IDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSAD---GPHRNILKIKPPMCFNEENADEFVLGLDEILT  436 (452)
T ss_pred             ----------eeeecccccCCCcHHHHHHHHHHHHHhhhEEEecC---CCCCceeecCCCcccChhhHHHHHHHHHHHHH
Confidence                      332211  11111  12 23444445667888642   22 455555  333366666776666666655


Q ss_pred             H
Q 047983          228 R  228 (233)
Q Consensus       228 ~  228 (233)
                      -
T Consensus       437 ~  437 (452)
T KOG1403|consen  437 V  437 (452)
T ss_pred             H
Confidence            3

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=97.09  E-value=0.016  Score=48.59  Aligned_cols=185  Identities=13%  Similarity=0.109  Sum_probs=99.9

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccC-CccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++.++|++|++.|-.|-+=-.-.--. --.|+..+. ..|. | --.|||.+|   .++|-++..+. +++         
T Consensus       179 ~v~~lak~~glkLH~DGARi~NAava-sgV~vk~i~~~fDS-V-siCLSKglg---APVGSViVG~k-~FI---------  242 (384)
T KOG1368|consen  179 RVKALAKRHGLKLHMDGARIFNAAVA-SGVPVKKICSAFDS-V-SICLSKGLG---APVGSVIVGSK-DFI---------  242 (384)
T ss_pred             HHHHHHhccCCeeecchhhhhhHHHH-cCCCHHHHHHhhhh-h-hhhhhccCC---CCcccEEEccH-HHH---------
Confidence            57889999999998886533211000 011222221 1121 1 226899764   45687655543 344         


Q ss_pred             hhhhHHhhhhhhh-hccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           81 SISLNMRMDDYLL-LSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                           .+.+.+.. ++.+.-... .+.+++.. -.+.+  ...+.-.++...+.+.++..+++..-.+..-..+..    
T Consensus       243 -----~kA~~~RKalGGGmRQsGvLaaaaLva-l~~~~--~~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~----  310 (384)
T KOG1368|consen  243 -----DKARHFRKALGGGMRQSGVLAAAALVA-LDENV--PLLRADHKRAKELAEYINTPEEIRVEVPAVETNIVN----  310 (384)
T ss_pred             -----HHHHHHHHHhcCchhHHHHHHHHHHHH-hhcch--HHHHHHHHHHHHHHHHhccccceeeecchhhcceee----
Confidence                 33333322 222222222 33333321 11111  144455667777778887776676533323344444    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHH-HHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRM-KAFYYR  228 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l-~~~l~~  228 (233)
                           +.+..+   ++  +.+.+-+.++++||.+.+|..    ..+|+.+-.  +.++++.....+ +.++..
T Consensus       311 -----~~l~q~---~~--~~~~l~~~~~k~gi~lm~~~s----~r~Rivlh~Qvt~~~ve~~~~~~~k~~~~q  369 (384)
T KOG1368|consen  311 -----MVLCQA---RL--TAEELCKFLEKNGILLMGGAS----RRIRIVLHHQVTDEDVEYVKSVLSKKFLKQ  369 (384)
T ss_pred             -----eecccc---cC--CHHHHHHHHHHCCeEEeeccc----cceEEEEEEecCHHHHHHHHHHHHHHHHhh
Confidence                 333323   22  555556667789999998753    568888875  899999999888 444443

>PLN02263 serine decarboxylase

Probab=96.86  E-value=0.079  Score=47.73  Aligned_cols=187  Identities=13%  Similarity=-0.029  Sum_probs=107.0

Q ss_pred             ChHHHHHHHcCc-----EEEEccccCccccCC-CccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCcccccc
Q 047983            1 FCIEETTKKLGI-----MVIADEVYGHLVFGN-THFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDL   74 (233)
Q Consensus         1 ~~i~~l~~~~~~-----~lI~De~y~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~   74 (233)
                      ++|.++|+++|+     |+-+|-+|+.+...- .....+. ...... =..-+..|. +..-..+|.+..++.  .++. 
T Consensus       248 ~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~d-f~~~vD-SIsvD~HK~-l~~P~~cgvll~R~~--~~~~-  321 (470)
T PLN02263        248 DLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVT-FKKPIG-SVSVSGHKF-VGCPMPCGVQITRME--HINV-  321 (470)
T ss_pred             HHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccC-CCcCcc-EEEECCccc-cCCCcCEEEEEEehh--hHhh-
Confidence            478999999997     999999999876521 1111111 111111 224477897 788889999998862  2211 


Q ss_pred             chhhhhhhhhHHhhhhh-hhhccCcchH-HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEE
Q 047983           75 GVAFFHSISLNMRMDDY-LLLSESVYTT-VGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMF  152 (233)
Q Consensus        75 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~  152 (233)
                       +.    .+. ..+... .++..+.+.. +..+...+...+.+-+++..+..-++.+++.+.|++. ++..+..|.....
T Consensus       322 -~~----~~~-~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p~s~~V  394 (470)
T PLN02263        322 -LS----SNV-EYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA-GISAMLNELSSTV  394 (470)
T ss_pred             -hc----cCh-HhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEeCCCceEE
Confidence             10    000 011100 1121122221 1333333444456677788888888899999999887 4444467776655


Q ss_pred             EEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          153 VMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                      ++            ..+.      +..      ..+|..+.+     ..+.+++++..  +.+.+++.++.|++.....
T Consensus       395 ~f------------~~p~------~~~------~~~gW~L~~-----~~~~~Hivvmphv~~~~id~fi~DL~~~~~~~  444 (470)
T PLN02263        395 VF------------ERPK------DEE------FVRRWQLAC-----QGNIAHVVVMPSVTIEKLDYFLKELVEKRSTW  444 (470)
T ss_pred             EE------------ecCc------hHH------hhcceEEcc-----CCCcEEEEEcCCCCHHHHHHHHHHHHHHHhhh
Confidence            54            2111      111      124555544     12568888876  6788888888887776643

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=96.81  E-value=0.0051  Score=53.56  Aligned_cols=116  Identities=18%  Similarity=0.085  Sum_probs=71.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++++++|+++|+++|+|.+=+..+...+....+.+.+.+   +++.|=-|.++  |-|-|.+++.+  +++         
T Consensus       177 ~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaD---LV~~SgdKllg--GPqaGii~GkK--elI---------  240 (395)
T COG1921         177 EELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGAD---LVSFSGDKLLG--GPQAGIIVGKK--ELI---------  240 (395)
T ss_pred             HHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCC---EEEEecchhcC--CCccceEechH--HHH---------
Confidence            478999999999999999998876533344455545554   77889999876  55689999988  444         


Q ss_pred             hhhhHHhhhhh---hhhccCcchHH---HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047983           81 SISLNMRMDDY---LLLSESVYTTV---GAVPQILEKTEEEFFSKITDILREAADICCDRLKE  137 (233)
Q Consensus        81 ~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  137 (233)
                           .+++..   ..+.....+.+   +++..++......+.....+.+.+-.+.+.+....
T Consensus       241 -----~~lq~~~l~Ralrv~K~tla~l~~aLe~y~~~~~~~~~~~~~~~l~~~~~~l~~~~~~  298 (395)
T COG1921         241 -----EKLQSHPLKRALRVDKETLAALEAALELYLQPEILGERLRTLRLLTQPAEALLAQAGR  298 (395)
T ss_pred             -----HHHHhhhhhhhhhcCcHhHHHHHHHHHHHcCchhhhhhhHHHHhhccHHHHHHHHhhh
Confidence                 333322   12344555554   44445443222344445555555555555555544

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=96.75  E-value=0.029  Score=48.91  Aligned_cols=192  Identities=15%  Similarity=0.111  Sum_probs=96.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCE-EEEccCccccCC-CCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPV-LTLGSISKRWIV-PGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~-i~~~s~sK~~~~-~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|.++|++||++.|+.-+|+-=.  ..-...+.......++ +++.|+-|.|.. .|   |-++++..+..+       
T Consensus       175 ~~IakiC~~~~IPhlvNnAYgvQ~--~~~~~~i~~a~~~GRvda~vqS~dkNF~VPvG---gai~As~~~~~i-------  242 (389)
T PF05889_consen  175 EEIAKICKEYDIPHLVNNAYGVQS--SKCMHLIQQAWRVGRVDAFVQSTDKNFMVPVG---GAIMASFDPSGI-------  242 (389)
T ss_dssp             HHHHHHHHHHT--EEEEGTTTTT---HHHHHHHHHHHHHSTCSEEEEEHHHHHCEESS---HEEEEESSHHHH-------
T ss_pred             HHHHHHHHHcCCceEEccchhhhH--HHHHHHHHHHHhcCCcceeeeecCCCEEecCC---CcEEEecCHHHH-------
Confidence            378999999999999999998711  0000011100011222 678899998754 34   444444432233       


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHH---HHHHHHhhhcHH---HHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCCccE
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTV---GAVPQILEKTEE---EFFSKITDILREAADICCDRLKE-IPCITCPKKPEGSM  151 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~---~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~  151 (233)
                             ..+....--.++..+..   ..+..+=...+.   ....+....+.++.+.+.+..++ +     ...|..-.
T Consensus       243 -------~~vs~~YpGRas~sp~ld~~itLl~LG~~g~~~ll~~r~~~f~~l~erl~~~aee~~e~l-----l~~p~N~i  310 (389)
T PF05889_consen  243 -------LAVSKEYPGRASASPSLDLFITLLSLGCTGYGALLKERKASFPYLKERLKKWAEEVGERL-----LETPRNHI  310 (389)
T ss_dssp             -------HHHHHTSHSHBTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEB-----SSSTT-SS
T ss_pred             -------HHHHHHhhhhhhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----cCCCCCCe
Confidence                   33333222222223332   222222111222   34445555666666666666554 2     23344444


Q ss_pred             EEEEecCCCcccccccccccCCCC-ChHHHHHHHHhccCEE----EECCcccC-------CCCcEEEEee--cCHHHHHH
Q 047983          152 FVMYCGSEDKCLLKLNYSLLEGIN-SDTEFALKLAKEESII----VLPGITVG-------LKDWLRITFA--VEPSAFEI  217 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~----v~pg~~f~-------~~~~~Rl~~~--~~~~~l~~  217 (233)
                      .+.         +.++  .+..+. .+..++...|..+||.    |.|+..+.       +..|+-++-+  .+.++++.
T Consensus       311 s~a---------~tl~--~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~~eevd~  379 (389)
T PF05889_consen  311 SMA---------FTLD--TLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMTREEVDY  379 (389)
T ss_dssp             EEE---------EE-T--TCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--HHHHHH
T ss_pred             eEE---------EECc--cchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHHHhCCCHHHHHH
Confidence            444         2232  221211 2567788888887664    44433332       2478877444  48999999


Q ss_pred             HHHHHHHHHH
Q 047983          218 GLGRMKAFYY  227 (233)
Q Consensus       218 ~~~~l~~~l~  227 (233)
                      .+++|.+.++
T Consensus       380 ~v~rL~k~i~  389 (389)
T PF05889_consen  380 FVKRLDKIIK  389 (389)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9999999874

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=96.68  E-value=0.059  Score=47.03  Aligned_cols=185  Identities=12%  Similarity=0.075  Sum_probs=96.2

Q ss_pred             HcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhhhhhHHhh
Q 047983            9 KLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRM   88 (233)
Q Consensus         9 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (233)
                      .+++++|+|-+=+-+    ..+..+.   .+  -+.+.|.-|.+|.||  ++.++.++  +.+++.  .+ ..-+. -.+
T Consensus       166 ~~~~llvvD~sS~~~----s~pid~~---~~--dvi~agsQKnlgP~G--ltvvivs~--~al~~~--~~-~~p~~-ldy  228 (364)
T PRK12462        166 LPDSPLIADMSSDFM----SRPFDVE---AY--GMVYAHAQKNLGPAG--VTVAIIRR--ALLERV--PD-TLPPM-LDF  228 (364)
T ss_pred             cCCCeEEEEcCchhh----CCCCChH---Hc--cEEEeeccccCCCCc--eEEEEECH--HHHhhc--cc-cCCch-hhH
Confidence            457777777665542    1222222   22  377889999999998  45677766  333211  00 00000 111


Q ss_pred             hhhhh--hccCcc-hHH-HHHHHHhhhcHHH--HHHHHHHHHHHHHHHHHHHhhcCCCcc-cccCCC--ccEEEEEecCC
Q 047983           89 DDYLL--LSESVY-TTV-GAVPQILEKTEEE--FFSKITDILREAADICCDRLKEIPCIT-CPKKPE--GSMFVMYCGSE  159 (233)
Q Consensus        89 ~~~~~--~~~~~~-~~~-~~~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~--~g~~~~~~~~~  159 (233)
                      +.+..  ...+++ ... .++...++--.++  =++.+.++-+++.+.+++.+++.+++. ....++  +-+-+.     
T Consensus       229 ~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~-----  303 (364)
T PRK12462        229 RTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMNVA-----  303 (364)
T ss_pred             HHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCcceEE-----
Confidence            11111  111122 222 3333332211112  356778888899999999998875332 112222  233333     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~  227 (233)
                          ++++.+      +-.+...+.++++|+.-..|..-  .+.+|.|+-.  +.+.++.+.+-++++-+
T Consensus       304 ----f~~~~~------~l~~~f~~~a~~~gl~~lkGhr~--vgg~Ras~yna~~~e~v~~L~~fm~~f~~  361 (364)
T PRK12462        304 ----FRFRQP------RLDTLFKEQSTEAGFCGLSGHRS--IGGIRASLYNAVSEQAVSRLCAFLKDFAI  361 (364)
T ss_pred             ----EEcCCH------HHHHHHHHHHHHCCCccccCCcc--cCceEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence                223221      13455566677889998876643  4679999986  66665555555554443

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=96.60  E-value=0.14  Score=50.39  Aligned_cols=189  Identities=13%  Similarity=0.078  Sum_probs=100.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCcccc---CCCCceEEEEEecCCCccccccc--h
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRW---IVPGWRLGWLVTSDPNGILQDLG--V   76 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~---~~~G~R~G~~~~~~~~~~~~~~~--~   76 (233)
                      +|.++|+++|+++++ -+... ....  ..+...++.+   |++++--|..   |..|-+.|++.+++  ++.+.+.  +
T Consensus       254 ~I~~~ah~~GaL~iV-aad~l-al~~--l~~pge~GAD---i~vgsgqKwg~P~G~GGP~aGflavr~--~~~r~~Pgri  324 (993)
T PLN02414        254 EFVKNAHANGVKVVM-ATDLL-ALTM--LKPPGEWGAD---IVVGSAQRFGVPMGYGGPHAAFLATSQ--EYKRLMPGRI  324 (993)
T ss_pred             HHHHHHHHcCCEEEE-EECHH-HhcC--CCCHhhccCc---EEEECCCccccCCCCCCCCeeEEEECH--HHHhhCCCcc
Confidence            789999999999998 22211 1111  1123334443   7778877763   12344599999987  4444332  1


Q ss_pred             hhhhh-hhhHHhh------h-hhh---hhccCcchH-H--HHHHHH-hhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           77 AFFHS-ISLNMRM------D-DYL---LLSESVYTT-V--GAVPQI-LEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        77 ~~~~~-~~~~~~~------~-~~~---~~~~~~~~~-~--~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                      +-.+. ..+...+      + +..   ..+++..+. +  ++++.+ +......=+++.++++.++..++.+.|+.. ++
T Consensus       325 VG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~-G~  403 (993)
T PLN02414        325 IGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKL-GF  403 (993)
T ss_pred             cCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhc-CC
Confidence            10000 0000000      0 001   111122111 1  333322 111122336677788899999999999775 44


Q ss_pred             ccccCCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHH
Q 047983          142 TCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGL  219 (233)
Q Consensus       142 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~  219 (233)
                      ....+|..+   .         +.+..+      +. +.+.+.|.++||.+..-.    ++.+|+|+..  ++++++.++
T Consensus       404 ~~~~~~~f~---~---------vt~~~~------~~-~~v~~~L~~~gI~l~~~~----~~~lrvs~~e~~T~edId~L~  460 (993)
T PLN02414        404 QVQSLPFFD---T---------VKVKCS------DA-DAIADAAAKVGINLRVVD----ANTVTVSFDETTTLEDVDKLF  460 (993)
T ss_pred             ccCCCCCcC---e---------EEEecC------CH-HHHHHHHHHCCCeeEEec----CCeEEEEeeccCCHHHHHHHH
Confidence            432222222   2         223322      24 555666778899775421    4679999985  788888888


Q ss_pred             HHHH
Q 047983          220 GRMK  223 (233)
Q Consensus       220 ~~l~  223 (233)
                      +.|.
T Consensus       461 ~~l~  464 (993)
T PLN02414        461 KVFA  464 (993)
T ss_pred             HHHc
Confidence            8885

>PLN03032 serine decarboxylase; Provisional

Probab=96.46  E-value=0.11  Score=45.67  Aligned_cols=181  Identities=13%  Similarity=-0.007  Sum_probs=96.0

Q ss_pred             ChHHHHHHHcC-----cEEEEccccCccccCC-CccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCcccccc
Q 047983            1 FCIEETTKKLG-----IMVIADEVYGHLVFGN-THFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDL   74 (233)
Q Consensus         1 ~~i~~l~~~~~-----~~lI~De~y~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~   74 (233)
                      ++|.++|+++|     +++.+|-+|+.+...= .....+. ... .---...|..|. +..-.-+|.+..++  ..++. 
T Consensus       181 ~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~-~~~-~vDSis~s~HK~-~g~P~g~G~ll~r~--~~~~~-  254 (374)
T PLN03032        181 DRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVT-FRK-PIGSVSVSGHKF-LGCPMPCGVALTRK--KHVKA-  254 (374)
T ss_pred             HHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccC-CCc-CCcEEEECcccc-cCCCcCeEEEEEEc--hhhHh-
Confidence            47999999996     5899999998743220 0001111 111 112446688997 55556689998887  33321 


Q ss_pred             chhhhhhhhhHHhhhh-hhhhccCcchH-HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEE
Q 047983           75 GVAFFHSISLNMRMDD-YLLLSESVYTT-VGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMF  152 (233)
Q Consensus        75 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~  152 (233)
                       +.. +.    ..+.. -.++..+.+.. +..+...+...+.+-..++.+..-++.+++.+.|++. ++..+..|.....
T Consensus       255 -~~~-~~----~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~~~~~p~~~~V  327 (374)
T PLN03032        255 -LSQ-NV----EYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA-GLTCRLNELSSTV  327 (374)
T ss_pred             -hcc-CC----cccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEECCCceEE
Confidence             100 00    00000 01122222211 1223333434455667778888888899999999886 4444466765554


Q ss_pred             EEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHH
Q 047983          153 VMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMK  223 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~  223 (233)
                      ++            ..+.      +..     +. +|..+.+     ..+++|+++..  +.+.+++.+.-|+
T Consensus       328 ~f------------~~~~------~~~-----~~-~~w~l~~-----~~~~~hi~vm~~~~~~~id~fi~dl~  371 (374)
T PLN03032        328 VF------------ERPM------DEA-----FI-KKWQLAC-----EGDIAHVVVMPNVTVEKLDEFVEELV  371 (374)
T ss_pred             EE------------cCCC------cHh-----Hh-heeeecc-----cCCEEEEEECCCCCHHHHHHHHHHHh
Confidence            44            2111      111     11 2444443     12588898875  5566666666554

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=96.43  E-value=0.6  Score=45.62  Aligned_cols=208  Identities=13%  Similarity=-0.029  Sum_probs=106.2

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccC----CCCceEEEEEecCCCccccccchh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWI----VPGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~----~~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      +|.++|+++|.++++|-++..-..   ...+...++.+   ++..|..|+|+    ..|--+|.+.+..  .+...|.-.
T Consensus       649 eI~~iah~~G~~v~VDgAq~~al~---~l~~Pg~~GaD---i~~~s~HKtf~~P~G~GGPg~G~i~vr~--~L~~~lPg~  720 (939)
T TIGR00461       649 HACDIVHSFGGQVYLDGANMNAQV---GLTSPGDLGAD---VCHLNLHKTFCIPHGGGGPGMGPIGVKS--HLIPFLPKH  720 (939)
T ss_pred             HHHHHHHHcCCEEEEEecChhhCC---CCCCccccCCC---EEEecCCccCCCCCCCCCCCeEEEEEhh--hchhhcCCC
Confidence            689999999999999999854111   11112223333   77888899554    2344489999986  333221100


Q ss_pred             hh-hhhhhHHhhhhhhhhcc-CcchHHHHH--HHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEE
Q 047983           78 FF-HSISLNMRMDDYLLLSE-SVYTTVGAV--PQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFV  153 (233)
Q Consensus        78 ~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~  153 (233)
                      .. .......+-++....+. ...+...++  ..++...+.+=+++..+.--.+.+++.+.|++...+  ..+...+.++
T Consensus       721 ~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~~~~--l~~~~~~~~~  798 (939)
T TIGR00461       721 DVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDHYPI--LFVGTLKHVA  798 (939)
T ss_pred             cccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhccCcc--cccCCCCcee
Confidence            00 00000000000001111 112211222  222222345567777888888999999999773222  1222223311


Q ss_pred             EEecCCCccccccccccc---CCCCChHHHHHHHHhccCEEEECCcccCCCC--cEEEEeecCHHHHHHHHHHHHHHHHH
Q 047983          154 MYCGSEDKCLLKLNYSLL---EGINSDTEFALKLAKEESIIVLPGITVGLKD--WLRITFAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~--~~Rl~~~~~~~~l~~~~~~l~~~l~~  228 (233)
                      -    +    +.++.+..   -++  ....+.+.|.+.|+.... ..|...+  .+|.+-..+.++++..++.+.++-++
T Consensus       799 h----E----fv~~~~~~~~~~g~--~~~dIakrL~d~G~hapt-~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e  867 (939)
T TIGR00461       799 H----E----CILDLRPLKAKTGI--EAIDVAKRLQDYGFHAPT-LSFPVPGTLMVEPTESESLEELDRFCDAMIAIKEE  867 (939)
T ss_pred             E----E----EEEeccchhhhcCC--CHHHHHHHHHhCCeeccc-cCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence            1    0    11222210   122  445555556677998543 3344333  35555555888889888888777666


Q ss_pred             Hh
Q 047983          229 HA  230 (233)
Q Consensus       229 ~~  230 (233)
                      ..
T Consensus       868 ~~  869 (939)
T TIGR00461       868 IN  869 (939)
T ss_pred             HH
Confidence            54

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=96.32  E-value=0.058  Score=47.34  Aligned_cols=148  Identities=16%  Similarity=0.100  Sum_probs=79.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccc-cccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFV-PMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+|+-+|-+|+...+-.+... -...+..-+  =..-+..|. +..-..+|++..++...+.+.  +. .
T Consensus       214 ~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~ad--Sit~d~HK~-l~~P~~~~~~l~r~~~~l~~~--~~-~  287 (373)
T PF00282_consen  214 EEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERAD--SITIDPHKW-LGVPYGCGVLLVRDKSDLRDA--FS-I  287 (373)
T ss_dssp             HHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGES--EEEEETTTT-TS-SSS-EEEEESSGGGHHGG--GE-E
T ss_pred             HHHhhhccccceeeeeccccccccccccccccccccccccc--ccccchhhh-hcCCccceeEEeecccchHHH--hc-c
Confidence            3799999999999999999998332111111 122222111  224478998 667779999999885222211  10 0


Q ss_pred             hhhhhHHh------hhhhhhhccCcchHHHHHH--HHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccE
Q 047983           80 HSISLNMR------MDDYLLLSESVYTTVGAVP--QILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSM  151 (233)
Q Consensus        80 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~  151 (233)
                      +..-+.+.      ...+...+...+-...++.  ..++..+.+-+++..+..-+..+++.+.|++.+.+....+|+-+.
T Consensus       288 ~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~  367 (373)
T PF00282_consen  288 NADYLGNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNI  367 (373)
T ss_dssp             EETCTT-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSE
T ss_pred             ChhhhcccccccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceE
Confidence            00000000      0001111111111112232  223334567778888888899999999999987777655666555


Q ss_pred             EEE
Q 047983          152 FVM  154 (233)
Q Consensus       152 ~~~  154 (233)
                      .+|
T Consensus       368 vcF  370 (373)
T PF00282_consen  368 VCF  370 (373)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=96.02  E-value=0.6  Score=39.96  Aligned_cols=204  Identities=13%  Similarity=0.031  Sum_probs=106.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCcccc-CCCCceEEEEEecCCCccccccchhh--
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDLGVAF--   78 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~R~G~~~~~~~~~~~~~~~~~~--   78 (233)
                      +|-+++.+|+++++.|-+|+--.    -+..+-..+.   -+-|++--|.+ +.||-.-|-.+.+++.+...+ .+.-  
T Consensus       187 aiT~~AH~~galv~wDLAHsaGa----vp~~Lh~~ga---DfaigcsyKYLNgGPGapa~l~v~~~h~e~~~~-~lsgW~  258 (407)
T COG3844         187 AITALAHQHGALVGWDLAHSAGA----VPVDLHAAGA---DFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWP-PLSGWW  258 (407)
T ss_pred             HHHHHHHhcCceEEeehhcccCC----cceeecccCC---CeeeeeeceeccCCCCCceeEEecccccccccc-cccccc
Confidence            46789999999999999999732    2233333333   27788888866 568877777776664222211 1100  


Q ss_pred             hhhhhhH--Hhhh---hhhhh-ccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc-CC--CcccccCCC
Q 047983           79 FHSISLN--MRMD---DYLLL-SESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKE-IP--CITCPKKPE  148 (233)
Q Consensus        79 ~~~~~~~--~~~~---~~~~~-~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~--~~~~~~~~~  148 (233)
                      -|..-+.  ..+.   ....+ +.+++... +++..-|..-.+--+.++|+.--.-.+++.+.++. .+  ++.. ..|.
T Consensus       259 gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l-~tPr  337 (407)
T COG3844         259 GHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTL-VTPR  337 (407)
T ss_pred             CCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEE-eccc
Confidence            0000000  0000   00011 11111111 22222221111222455555555555666666655 22  2221 2222


Q ss_pred             ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec---CHHHHHHHHHHHHHH
Q 047983          149 GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV---EPSAFEIGLGRMKAF  225 (233)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~---~~~~l~~~~~~l~~~  225 (233)
                      ..       -.-++++.+-.       +....+.+.|-++||+.    .|-..+-+|+.+++   +-+++-.+.+.|+++
T Consensus       338 ~~-------~~rGsqvS~~h-------p~~~~V~qaLi~rGVig----D~R~P~vlRfgftPlY~~~~DVw~AV~~L~ev  399 (407)
T COG3844         338 AH-------EERGSQVSLYH-------PHGYQVMQALIDRGVIG----DFREPDVLRFGFTPLYVSFVDVWDAVDALEEV  399 (407)
T ss_pred             hh-------hhccceeeEec-------CcHHHHHHHHHHcCccc----cccCCCeeeecCccceechhHHHHHHHHHHHH
Confidence            10       00001111222       25677778888999984    44556899999986   678889999999999


Q ss_pred             HHHHhhc
Q 047983          226 YYRHAKK  232 (233)
Q Consensus       226 l~~~~~~  232 (233)
                      +++.+.+
T Consensus       400 L~t~a~~  406 (407)
T COG3844         400 LDTLAWQ  406 (407)
T ss_pred             HHhhccC
Confidence            9887654

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=95.97  E-value=0.29  Score=47.73  Aligned_cols=90  Identities=14%  Similarity=0.025  Sum_probs=61.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEE
Q 047983          112 TEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESII  191 (233)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~  191 (233)
                      .+.+=++++.++...+..++.+.|++. ++.. ..+  .+|-.         +.+.++.     .+.+.+.+.+.++||.
T Consensus       335 ~G~~GL~~iA~~~~~~a~~l~~~L~~~-G~~~-~~~--~fF~~---------~~v~~~~-----~~~~~i~~~~~~~gi~  396 (939)
T TIGR00461       335 HGPKGLKNIARRIHSLTSILANGLEND-PHEL-INK--TWFDT---------LTVKVGN-----GISSELLKAAEEFNIN  396 (939)
T ss_pred             HCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcc-cCC--Cccce---------EEEEeCC-----CCHHHHHHHHHHCCCe
Confidence            345668888899999999999999885 5543 222  44444         4444321     1455566667788999


Q ss_pred             EECCcccCCCCcEEEEeec--CHHHHHHHHHHHH
Q 047983          192 VLPGITVGLKDWLRITFAV--EPSAFEIGLGRMK  223 (233)
Q Consensus       192 v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~  223 (233)
                      +...    .++.+++|+..  +.++++..++.+.
T Consensus       397 l~~~----~~~~i~~s~~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       397 LRAV----DTTTVGIALDETTTKADVENLLKVFD  426 (939)
T ss_pred             eeec----CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence            7652    24688999985  7888888888774

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=95.92  E-value=0.32  Score=43.51  Aligned_cols=188  Identities=17%  Similarity=0.164  Sum_probs=105.9

Q ss_pred             hHHHHHHHcCcEEEEccc------cC----ccccCCCcccccccc-----CCccCEEEEccCccccCCC-CceEEEEEec
Q 047983            2 CIEETTKKLGIMVIADEV------YG----HLVFGNTHFVPMGVF-----GSIVPVLTLGSISKRWIVP-GWRLGWLVTS   65 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~------y~----~~~~~~~~~~~~~~~-----~~~~~~i~~~s~sK~~~~~-G~R~G~~~~~   65 (233)
                      ++.++|++||+.++.|=+      |.    +-.+.+.   ++..+     ..-|  -+..|+||.++.| |   |+++++
T Consensus       208 ~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~---si~eI~rE~~~~aD--svt~slsKglgApvG---g~Lag~  279 (467)
T TIGR02617       208 AVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNW---SIEQITRETYKYAD--MLAMSAKKDAMVPMG---GLLCFK  279 (467)
T ss_pred             HHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCC---CHHHHHHHhhccCC--EEEEEcCCCCCCccc---ceEEec
Confidence            678999999999999853      31    1112222   22222     1112  4466999998777 6   777777


Q ss_pred             CCC--ccccccchhhhhhhhhHHhhhhh----hh-hccCcchH-H-HHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHh
Q 047983           66 DPN--GILQDLGVAFFHSISLNMRMDDY----LL-LSESVYTT-V-GAVPQILEKT-EEEFFSKITDILREAADICCDRL  135 (233)
Q Consensus        66 ~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~-~-~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L  135 (233)
                      +++  +++              .+++..    -. .+-+..+. . .+++.-|.+. ..+++.....    ..++|.+.|
T Consensus       280 d~~~~~l~--------------~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~----qv~yl~~~L  341 (467)
T TIGR02617       280 DDSFFDVY--------------TECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIN----QVQYLVNGL  341 (467)
T ss_pred             chhHHHHH--------------HHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHH----HHHHHHHHH
Confidence            731  222              222221    01 11122222 2 5555444333 3345444443    345677777


Q ss_pred             hcCCCcccccCCCccEEEEEecCCCccccccccccc-CCC----CChHHHHHHHHhccCEEEECCcccC-----------
Q 047983          136 KEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLL-EGI----NSDTEFALKLAKEESIIVLPGITVG-----------  199 (233)
Q Consensus       136 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~ll~~~gi~v~pg~~f~-----------  199 (233)
                      .+. ++.. .. .||--++           ++...+ +.+    -+...++..+..+.||.-.--..+.           
T Consensus       342 ~~~-Gvpi-~~-~Gghav~-----------iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~  407 (467)
T TIGR02617       342 EEI-GVVC-QQ-AGGHAAF-----------VDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQL  407 (467)
T ss_pred             HhC-CCcE-Ee-cCccEEE-----------EehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCCccC
Confidence            775 5543 34 5666665           322221 111    1366788888889999866533331           


Q ss_pred             -C-CCcEEEEeec---CHHHHHHHHHHHHHHHHHH
Q 047983          200 -L-KDWLRITFAV---EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       200 -~-~~~~Rl~~~~---~~~~l~~~~~~l~~~l~~~  229 (233)
                       + -..+|+++.-   +.+.++-+.+.+..+.++-
T Consensus       408 ~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~~  442 (467)
T TIGR02617       408 PCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENA  442 (467)
T ss_pred             CCccceeeeccccccccHhHHHHHHHHHHHHHhhh
Confidence             0 1579999983   7888999999988877654

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=95.65  E-value=1.2  Score=39.67  Aligned_cols=205  Identities=12%  Similarity=0.057  Sum_probs=112.7

Q ss_pred             ChHHHHHHH-cCcEEEEccccCccccC-CCccccccccCCccC-EEEEccCc-cccCCCCceEEEEEecCCCccccccch
Q 047983            1 FCIEETTKK-LGIMVIADEVYGHLVFG-NTHFVPMGVFGSIVP-VLTLGSIS-KRWIVPGWRLGWLVTSDPNGILQDLGV   76 (233)
Q Consensus         1 ~~i~~l~~~-~~~~lI~De~y~~~~~~-~~~~~~~~~~~~~~~-~i~~~s~s-K~~~~~G~R~G~~~~~~~~~~~~~~~~   76 (233)
                      |+|.++..+ +++++-+|-+-+.|+-. +..  ....++-.++ |-.+..-+ | ||+.=--++|++-.+.+.+-.++-+
T Consensus       238 e~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~--~~~~fdFr~p~V~Sisa~~HK-YGl~~~G~~~vl~r~k~~~~~q~~~  314 (491)
T KOG1383|consen  238 EKLADLLLEIWDIPIHVDACLGGFINPAGYL--NEEEFDFRVPGVTSISADGHK-YGLAPAGSSWVLYRNKELLPHQLFF  314 (491)
T ss_pred             HHHHHHHHHHhCCceeecccCcccccccccc--CccccccCCCCceeEeeccce-eeeeecCcEEEEEcccccccceEEE
Confidence            467788888 99999999999999864 111  1111222222 22222222 3 3554444799998886434332111


Q ss_pred             hhhhhhhhHHhhhhhhhh-ccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEE
Q 047983           77 AFFHSISLNMRMDDYLLL-SESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVM  154 (233)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~  154 (233)
                      .   .. -...+....++ .+-+.++. ++.++++.-+.+.+.+ ..+.+.++...+.+.+++++++..+.+|.=++-+|
T Consensus       315 ~---~~-w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~-~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~  389 (491)
T KOG1383|consen  315 H---TD-WLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRE-NTQNIVETARKLREGIENIKGIKIVGKPLVSFILF  389 (491)
T ss_pred             e---cc-ccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHhhhccccceecCCCcEEEEEc
Confidence            1   00 00111111111 12233333 5566665434444444 44457788888999998877766555565454444


Q ss_pred             EecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHHHHHHHHHhh
Q 047983          155 YCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l~~~l~~~~~  231 (233)
                                  +-+.   .  +.-.+-.+|.+.|-.+. +--|....++-++... .++--+..+.-|++++++..+
T Consensus       390 ------------~s~~---~--~i~elsd~l~~~GW~ln-alq~P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~  449 (491)
T KOG1383|consen  390 ------------GSND---V--NIFELSDLLRKKGWILN-ALQFPAAIHICVTRVHAREDVADRFVADIRKVVEELKS  449 (491)
T ss_pred             ------------cCCc---c--chhhhhHHHHhcCcCcc-ccCCCCceEEEEEeeeccHHHHHHHHHHHHHHHHHHHh
Confidence                        2211   1  45556677888887664 4556655555555555 455456677778888777653

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=94.86  E-value=0.066  Score=46.30  Aligned_cols=58  Identities=22%  Similarity=0.327  Sum_probs=38.0

Q ss_pred             hHHHHHHH--cCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC----CCceEEEEEecCCCccc
Q 047983            2 CIEETTKK--LGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV----PGWRLGWLVTSDPNGIL   71 (233)
Q Consensus         2 ~i~~l~~~--~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~R~G~~~~~~~~~~~   71 (233)
                      ++++++++  .++++++|.+|++|+-.. +   ...++.+   +..+|+-|.-|.    +|   ||++++.  +++
T Consensus       179 ~~i~~vk~~~p~~iifVDNCYGEFvE~~-E---P~~vGAD---l~aGSLIKNpGGgiAptG---GYIaGr~--~lV  242 (403)
T PF06838_consen  179 EIIKFVKEINPDVIIFVDNCYGEFVETQ-E---PTEVGAD---LMAGSLIKNPGGGIAPTG---GYIAGRK--DLV  242 (403)
T ss_dssp             HHHHHHHHH-TTSEEEEE-TTTTTTSSS-----GGGGT-S---EEEEETTSGGGTTT-SS----EEEEESH--HHH
T ss_pred             HHHHHHHhhCCCeEEEEeCCcceecccc-C---ccccchh---heeccceeCCCCCccCcC---CEEechH--HHH
Confidence            34444554  499999999999997332 2   2234454   889999997543    56   9999987  455

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=94.82  E-value=2.6  Score=37.71  Aligned_cols=53  Identities=13%  Similarity=0.050  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec---CHHHHHHHHHHHHHHHHHH
Q 047983          176 SDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV---EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       176 ~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~---~~~~l~~~~~~l~~~l~~~  229 (233)
                      .+..++.++-....|.+.|.+ +.+.-.+|++++.   +.++++++-+.|.+.....
T Consensus       417 ~ne~Ll~~in~~g~i~l~~~~-l~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l  472 (511)
T KOG0628|consen  417 INEALLNRLNSSGRIHLVPAS-LHGKFVLRFAVCSPLTNESDIDEAWKIIFEAADEL  472 (511)
T ss_pred             HHHHHHHHHHhcCcEEEEEee-ecceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Confidence            377888888888899999854 3334569999985   6888999998888877663

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=94.33  E-value=0.12  Score=44.75  Aligned_cols=119  Identities=20%  Similarity=0.128  Sum_probs=43.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCcccc---CC-CccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccch
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVF---GN-THFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGV   76 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~---~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~   76 (233)
                      +++++++++||+++|+|-.=+.+..   .+ +...++...-...--+++.|=.|.+|.|.  .|.+++..  +++     
T Consensus       160 ~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ--aGiI~Gkk--~lI-----  230 (367)
T PF03841_consen  160 EELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQ--AGIIVGKK--ELI-----  230 (367)
T ss_dssp             -HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S---EEEEEEH--HHH-----
T ss_pred             HHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCC--eEEEEeCH--HHH-----
Confidence            5799999999999999987743321   11 11122332222223377888899887666  79999998  444     


Q ss_pred             hhhhhhhhHHhhhhhhh---hccCcchHH---HHHHHHhhhc-------HHHHHHHHHHHHHHHHHHHHHHhhc
Q 047983           77 AFFHSISLNMRMDDYLL---LSESVYTTV---GAVPQILEKT-------EEEFFSKITDILREAADICCDRLKE  137 (233)
Q Consensus        77 ~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~l~~~L~~  137 (233)
                               .+++..--   +...-.+.+   +++..++...       -...+....+.++++.+.+...|+.
T Consensus       231 ---------~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~l~~  295 (367)
T PF03841_consen  231 ---------EKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQLKA  295 (367)
T ss_dssp             ---------HHHHHHHHTTT-B--HHHHHHHHHHHHH-------------------------------------
T ss_pred             ---------HHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccc
Confidence                     33332211   222223332   3333333211       1134556667777788888777766

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=93.56  E-value=3.2  Score=35.99  Aligned_cols=162  Identities=16%  Similarity=0.035  Sum_probs=86.1

Q ss_pred             EEEEccCccccCCCCceEEEEEecCCCccccccchhhhhhhhhHHhhhhh--hhhccCcchHH--HH---HHHHhhhcHH
Q 047983           42 VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDY--LLLSESVYTTV--GA---VPQILEKTEE  114 (233)
Q Consensus        42 ~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~---~~~~l~~~~~  114 (233)
                      -++..|--|.+|..|  ++-++.++  +++.+.+-...-++   -++...  .....++++..  +.   .-.+++..+ 
T Consensus       192 dviyagaQKnlGpaG--ltvvIvr~--~~l~r~~~~~~P~i---f~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~G-  263 (365)
T COG1932         192 DVIYAGAQKNLGPAG--LTVVIVRP--DLLERAESYTLPSI---FDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQG-  263 (365)
T ss_pred             ceEEEehhhccCccc--eEEEEEcH--HHHhcccccCCchH---hhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcC-
Confidence            367788999999999  88888887  45432110000000   011111  11122333332  11   111222221 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC--ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEE
Q 047983          115 EFFSKITDILREAADICCDRLKEIPCITCPKKPE--GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIV  192 (233)
Q Consensus       115 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v  192 (233)
                       =++.+.++-+++.+.|.+.+++-+.......++  +-+-+.         +++....+     +..++.. ++++|+..
T Consensus       264 -Gl~~~~~rn~~ka~~LY~~id~s~fy~~~v~~~~RS~mnV~---------f~~~~~~l-----d~~fv~e-ae~~gl~~  327 (365)
T COG1932         264 -GLEALEARNQAKAQLLYDWIDKSDFYRNLVAKANRSRMNVT---------FTLVDAEL-----DKGFVAE-AEAAGLIY  327 (365)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHhCCccccccchhhccceeEE---------EEcCcHHH-----HHHHHHH-HHHcCCce
Confidence             235566777888899999987753222222222  234444         33332211     4455555 44567777


Q ss_pred             ECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          193 LPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       193 ~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                      .-|+.  ..+.+|+++..  +.++++.+++-|..+.+++
T Consensus       328 lkGhr--~vgGmRasiynA~~~e~veaL~~fm~~f~~~~  364 (365)
T COG1932         328 LKGHR--SVGGLRASIYNAVPLEDVEALTDFMDWFEETY  364 (365)
T ss_pred             ecccc--CCCceeeeeecCCCHHHHHHHHHHHHHHHHhh
Confidence            76643  23559999996  7888888877777776654

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=91.97  E-value=1.4  Score=38.98  Aligned_cols=208  Identities=14%  Similarity=0.117  Sum_probs=98.4

Q ss_pred             hHHHHHHHcCcEEEEccccCc-cccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGH-LVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      .|+++|++|++|+-+|-+++. +.....+...+..+...+  -+..+..|. ..+.+.++.+...... ++++  .-..+
T Consensus       274 ~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~--SvtwnpHK~-~gaplqCsa~l~r~~g-ll~~--Cn~~~  347 (510)
T KOG0629|consen  274 GIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERAN--SVTWNPHKL-MGAPLQCSAFLTREEG-LLQR--CNQMS  347 (510)
T ss_pred             HHHHHHHhcCEEEEeecccccccccChhhHhhccCccccC--ceeecHHHh-hcCcchhhHHHHHHHH-HHHh--hcccc
Confidence            589999999999999999997 333322222333232212  224467787 5567777776666531 2210  00000


Q ss_pred             hhhhHHhhhhhh-hh-ccCcchHH----HH--HHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC--CCcc
Q 047983           81 SISLNMRMDDYL-LL-SESVYTTV----GA--VPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKK--PEGS  150 (233)
Q Consensus        81 ~~~~~~~~~~~~-~~-~~~~~~~~----~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~g  150 (233)
                      ..-+...-+.|. +. +..-..|-    -.  +.-+.+..+..=+++..+.+-+.++++...|++-++......  |+  
T Consensus       348 A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe--  425 (510)
T KOG0629|consen  348 AIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPE--  425 (510)
T ss_pred             hhhhhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCc--
Confidence            000000000000 00 00011110    11  222233333444566777788899999999988544221122  44  


Q ss_pred             EEEEEecCCCcccccccccccCCCCChHH----------HHHHHHhccCEEEECCcccCC-CCcEEEEeec---CHHHHH
Q 047983          151 MFVMYCGSEDKCLLKLNYSLLEGINSDTE----------FALKLAKEESIIVLPGITVGL-KDWLRITFAV---EPSAFE  216 (233)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ll~~~gi~v~pg~~f~~-~~~~Rl~~~~---~~~~l~  216 (233)
                       +..+||--.|..++       +.+++.+          .+....-+.|-..+.=...+. .+|+|+-++.   +.++++
T Consensus       426 -~~nv~fw~vp~~lR-------~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~d  497 (510)
T KOG0629|consen  426 -HVNVCFWYVPPSLR-------GWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLD  497 (510)
T ss_pred             -eEEEeeccCchHhc-------cCcccchhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHH
Confidence             33323322222222       1111111          122222244655542222222 6899998875   466667


Q ss_pred             HHHHHHHHH
Q 047983          217 IGLGRMKAF  225 (233)
Q Consensus       217 ~~~~~l~~~  225 (233)
                      -.++.|..+
T Consensus       498 flldEIerl  506 (510)
T KOG0629|consen  498 FLLDEIERL  506 (510)
T ss_pred             HHHHHHHHh
Confidence            776666543

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=91.75  E-value=9.4  Score=34.20  Aligned_cols=127  Identities=17%  Similarity=0.220  Sum_probs=63.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC----CCceEEEEEecCCCccccccchh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV----PGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      +|.++++++|..+|+  .--......  ..+...++.+   |++++ +|.||.    .|=-.|++.+++  .++++|.-.
T Consensus       217 ~i~~~~h~~gal~~~--~ad~~aL~~--l~~Pge~GAD---I~vg~-~Q~fg~p~~~GGP~~G~~a~~~--~l~r~lPGR  286 (429)
T PF02347_consen  217 EIADIAHAAGALVIV--GADPNALGG--LKSPGEYGAD---IVVGE-HQTFGIPMGFGGPGAGFFAVRE--DLVRQLPGR  286 (429)
T ss_dssp             HHHHHHHHTT-EEEE--CGGCCGCCT--C--GGGGT-S---EEEEC-CTTTT---CCC-S--EEEEE-G--GGGGGS-S-
T ss_pred             HHHHHHHHcCCEEEE--ecCHHHHhC--cCChhhcCcc---EEeeC-CCCCcccCCCCCCCeeeEEEhh--hhhhhCCCc
Confidence            688999999999886  222222221  1122223332   55665 777643    345589999988  566544322


Q ss_pred             hhhh----hhh--------HH------hhhhhhhhccCcchHH-H-HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047983           78 FFHS----ISL--------NM------RMDDYLLLSESVYTTV-G-AVPQILEKTEEEFFSKITDILREAADICCDRLKE  137 (233)
Q Consensus        78 ~~~~----~~~--------~~------~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  137 (233)
                       +..    ..+        ..      +-+...++++  +... + +.+.++...+.+=+++..+....+..++.+.|++
T Consensus       287 -iVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIct--nqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~  363 (429)
T PF02347_consen  287 -IVGQTKDADGKRAFVLTLQTREQHIRREKATSNICT--NQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKK  363 (429)
T ss_dssp             -EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---S--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             -eecccccccccceeeeccccccccccccchhhhhhh--hHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             110    000        01      1111112222  2222 2 2233333446677899999999999999999988


Q ss_pred             CCCc
Q 047983          138 IPCI  141 (233)
Q Consensus       138 ~~~~  141 (233)
                      +.+.
T Consensus       364 ~~~~  367 (429)
T PF02347_consen  364 IYGL  367 (429)
T ss_dssp             TTBE
T ss_pred             hcCc
Confidence            6333

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=88.76  E-value=0.35  Score=40.18  Aligned_cols=53  Identities=17%  Similarity=0.181  Sum_probs=33.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccC-EEEEccCccccCCC
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-VLTLGSISKRWIVP   55 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~-~i~~~s~sK~~~~~   55 (233)
                      |+|..+|..|+++=|+..+|+.-.  ......+.+...-.+ --++.|+-|.|..|
T Consensus       177 eaiaaica~~diphivnnayglqs--ee~i~~iaa~~~~grida~vqsldknf~vp  230 (432)
T KOG3843|consen  177 EAIAAICAAHDIPHIVNNAYGLQS--EECIHKIAAAAECGRIDAFVQSLDKNFMVP  230 (432)
T ss_pred             HHHHHHHHccCchhhhccccccch--HHHHHHHHHHhhhccHHHHHHHhhhcceee
Confidence            579999999999999999998621  111111211111122 14567999988654

>PRK12566 glycine dehydrogenase; Provisional

Probab=81.65  E-value=53  Score=32.62  Aligned_cols=87  Identities=13%  Similarity=0.065  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEE
Q 047983          113 EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIV  192 (233)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v  192 (233)
                      +.+=++++.++...+..++.+.|.+. ++..   ....||-.         +.+.+..      +.+.+.....+.||-+
T Consensus       350 Gp~Gl~~ia~~~~~~a~~l~~~l~~~-g~~~---~~~~fF~~---------~~v~~~~------~~~~~~~~a~~~~~n~  410 (954)
T PRK12566        350 GPEGLKRIAQRVHRLTAILAAGLEAK-GIKR---LNRHFFDT---------LTLEVGG------AQAAIIESAEAARINL  410 (954)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhc-CCcc---ccCCccce---------EEEEccC------CHHHHHHHHHHCCCee
Confidence            45557888899999999999999884 5542   22355555         5554421      3444555566778887


Q ss_pred             ECCcccCCCCcEEEEeec--CHHHHHHHHHHH
Q 047983          193 LPGITVGLKDWLRITFAV--EPSAFEIGLGRM  222 (233)
Q Consensus       193 ~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l  222 (233)
                      +--    +++.+.+|+..  +.++++.++..+
T Consensus       411 r~~----~~~~~~~s~de~~~~~~~~~~~~~f  438 (954)
T PRK12566        411 RIL----GRGRLGVSLDETCDEATVARLFDIF  438 (954)
T ss_pred             EEe----CCCeEEEEeCCCCCHHHHHHHHHHh
Confidence            642    23567788874  678888777766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	233
3pdx_A	402	Crystal Structural Of Mouse Tyrosine Aminotransfera		1e-23
3dyd_A	427	Human Tyrosine Aminotransferase Length = 427		6e-23
1bw0_A	416	Crystal Structure Of Tyrosine Aminotransferase From		3e-14
1xi9_A	406	Alanine Aminotransferase From Pyrococcus Furiosus P		6e-08
2z61_A	370	Crystal Structure Of Mj0684 From Methanococcus Jann		3e-07
1j32_A	388	Aspartate Aminotransferase From Phormidium Lapideum		7e-06
1gde_A	389	Crystal Structure Of Pyrococcus Protein A-1 E-form		5e-05
1dju_A	388	Crystal Structure Of Aromatic Aminotransferase From		6e-05
1u08_A	386	Crystal Structure And Reactivity Of Ybdl From Esche		9e-05
1o4s_A	389	Crystal Structure Of Aspartate Aminotransferase (Tm		1e-04

>pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 26/222 (11%)
Query: 12  IMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL 71
           + ++ADE+YG +VF +  + PM    + VP+L+ G ++ RW+VPGWRLGW++  D   I 
Sbjct: 202 VPILADEIYGDMVFSDCKYEPMATLSTNVPILSCGGLAXRWLVPGWRLGWILIHDRRDIF 261
Query: 72  QDLGVAFFHSISLNMRMDDYLLLSESVYTTV----GAVPQILEKTEEEFFSKITDILREA 127
                        N   D  + LS+ +        GA+  IL++T +EF+      L+  
Sbjct: 262 G------------NEIRDGLVKLSQRILGPCTIVQGALKSILQRTPQEFYQDTLSFLKSN 309
Query: 128 ADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKE 187
           AD+C   L  IP +  P +P G+M++M         + +         +D EF  +L  E
Sbjct: 310 ADLCYGALSAIPGLQ-PVRPSGAMYLM---------VGIEMEHFPEFENDVEFTERLIAE 359
Query: 188 ESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRH 229
           +S+  LP       ++ R+   V          R++ F  +H
Sbjct: 360 QSVHCLPATCFEYPNFFRVVITVPEVMMLEACSRIQEFCEQH 401

>pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427

Iteration: 1
 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 26/222 (11%)
Query: 12  IMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL 71
           + ++ADE+YG +VF +  + P+    + VP+L+ G ++KRW+VPGWRLGW++  D   I 
Sbjct: 225 VPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIF 284
Query: 72  QDLGVAFFHSISLNMRMDDYLLLSESVYTTV----GAVPQILEKTEEEFFSKITDILREA 127
                        N   D  + LS+ +        GA+  IL +T  EF+      L+  
Sbjct: 285 G------------NEIRDGLVKLSQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSN 332
Query: 128 ADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKE 187
           AD+C   L  IP +  P +P G+M++M         + +         +D EF  +L  E
Sbjct: 333 ADLCYGALAAIPGLR-PVRPSGAMYLM---------VGIEMEHFPEFENDVEFTERLVAE 382
Query: 188 ESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRH 229
           +S+  LP       +++R+   V          R++ F  +H
Sbjct: 383 QSVHCLPATCFEYPNFIRVVITVPEVMMLEACSRIQEFCEQH 424

>pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 25/229 (10%)
Query: 7   TKKLGIMVIADEVYGHLVFG----NTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
            ++L + + +DE+Y  +VF     N  F  +  F + VP + LG  +   +VPGWRLGWL
Sbjct: 206 AEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAXNLVVPGWRLGWL 265
Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
           +  DP+G     G +F   +    R+   +L+         A+ + L  T +E   +I  
Sbjct: 266 LYVDPHGN----GPSFLEGLK---RVG--MLVCGPCTVVQAALGEALLNTPQEHLDQIVA 316
Query: 123 ILREAADICCDRLKEIPCIT-CPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFA 181
            + E+A    + + E  CI   P  P G+M++M          +++      I +D EF 
Sbjct: 317 KIEESAMYLYNHIGE--CIGLAPTMPRGAMYLMS---------RIDLEKYRDIKTDVEFF 365
Query: 182 LKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHA 230
            KL +EE++ VLPG       + R+T       +   + R+KAF  RHA
Sbjct: 366 EKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQRHA 414

>pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 12/142 (8%)
Query: 12  IMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL 71
           I VI+DE+Y  + +   H  P G     VPV+ +  +SK +   GWRLG++   DP   L
Sbjct: 208 IPVISDEIYDLMTYEGEHISP-GSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKL 266
Query: 72  QDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADIC 131
            ++  A      + +  +     + + +  +  +   +     ++  +    L+E  D  
Sbjct: 267 SEVREAIDRLARIRLCPN-----TPAQFAAIAGLTGPM-----DYLKEYMKKLKERRDYI 316
Query: 132 CDRLKEIPCITCPKKPEGSMFV 153
             RL EIP I+   KP+G+ ++
Sbjct: 317 YKRLNEIPGIST-TKPQGAFYI 337

>pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 34/214 (15%)
Query: 14  VIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 73
           +I+DE+Y  LV+    +  +    ++   + +   S  + + GWR+G+++++D       
Sbjct: 186 IISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSXLYAMTGWRIGYVISND------- 238
Query: 74  LGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCD 133
                   I   +++   L +S    +   A+    ++TE E  S I +  R    +   
Sbjct: 239 ------EIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRR-LVLK 291
Query: 134 RLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVL 193
            +K+         P G+ +V     ED                  EFA KL KE+ + + 
Sbjct: 292 YVKDFGWEV--NNPIGAYYVFPNIGED----------------GREFAYKLLKEKFVALT 333
Query: 194 PGITVGL--KDWLRITFAVEPSAFEIGLGRMKAF 225
           PGI  G   K+++RI++A      + GL R+K F
Sbjct: 334 PGIGFGSKGKNYIRISYANSYENIKEGLERIKEF 367

>pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/228 (17%), Positives = 95/228 (41%), Gaps = 31/228 (13%)
Query: 2   CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG--SIVPVLTLGSISKRWIVPGWRL 59
            I +   + G+ V++DE+Y  +++ +   + +G     +    +     +K + + GWR+
Sbjct: 187 AIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRV 246
Query: 60  GWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSK 119
           G+L  + P  +++       HS S           +   +   GA+     +  ++   +
Sbjct: 247 GFL--AGPVPLVKAATKIQGHSTS-----------NVCTFAQYGAIAAY--ENSQDCVQE 291
Query: 120 ITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTE 179
           +     E      D L  +P + CP KP+G+ ++               S+ +   S  +
Sbjct: 292 MLAAFAERRRYMLDALNAMPGLECP-KPDGAFYMF-------------PSIAKTGRSSLD 337
Query: 180 FALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYY 227
           F  +L  +  +  +PG   G  D +R+++A +    + G+ R++ F +
Sbjct: 338 FCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLH 385

>pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 92/218 (42%), Gaps = 37/218 (16%)
Query: 12  IMVIADEVYGHLVFGNT-HFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI 70
           ++VI+DEVY H ++ +  H+    + G     +T+   SK + + GWRLG++    P+ I
Sbjct: 194 LIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAA--PSWI 251
Query: 71  LQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILRE---A 127
           ++              RM  + + + +   T           +E  +  + ++ +E    
Sbjct: 252 IE--------------RMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRR 297
Query: 128 ADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKE 187
             +   RL E+   T   KP+G+ F ++    D  L    +S L            + KE
Sbjct: 298 RKLVWKRLNEMGLPTV--KPKGA-FYIFPRIRDTGLTSKKFSEL------------MLKE 342
Query: 188 ESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMK 223
             + V+PG   G   + ++RI++A      E  + RM+
Sbjct: 343 ARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRME 380

>pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 92/218 (42%), Gaps = 37/218 (16%)
Query: 12  IMVIADEVYGHLVFGNT-HFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI 70
           ++VI+DEVY H ++ +  H+    + G     +T+   SK + + GWRLG++    P+ I
Sbjct: 193 LIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAA--PSWI 250
Query: 71  LQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILRE---A 127
           ++              RM  + + + +   T           +E  +  + ++ +E    
Sbjct: 251 IE--------------RMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRR 296
Query: 128 ADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKE 187
             +   RL E+   T   KP+G+ F ++    D  L    +S L            + KE
Sbjct: 297 RKLVWKRLNEMGLPTV--KPKGA-FYIFPRIRDTGLTSKKFSEL------------MLKE 341
Query: 188 ESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMK 223
             + V+PG   G   + ++RI++A      E  + RM+
Sbjct: 342 ARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMERME 379

>pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 90/224 (40%), Gaps = 48/224 (21%)
Query: 12  IMVIADEVYGHLVFGNTHFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGWLVTSDPNGI 70
           I VI+DEVY H+ F       +     +    + + S  K + + GW++G+ V   P   
Sbjct: 197 IFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAP--- 253
Query: 71  LQDLGVAFFHSISLNMR-MDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAAD 129
                      IS  +R +  YL    SV T        + + E E +  + D  R+  D
Sbjct: 254 -----------ISAEIRKVHQYLTF--SVNTPAQLALADMLRAEPEHYLALPDFYRQKRD 300
Query: 130 ICCDRLKE-----IPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKL 184
           I  + L E     +PC       EG+ F++           ++YS +  ++ D EF   L
Sbjct: 301 ILVNALNESRLEILPC-------EGTYFLL-----------VDYSAVSTLD-DVEFCQWL 341
Query: 185 AKEESIIVLPGITVGLKD-----WLRITFAVEPSAFEIGLGRMK 223
            +E  +  +P ++V   D      +R+ FA + S       R++
Sbjct: 342 TQEHGVAAIP-LSVFCADPFPHKLIRLCFAKKESTLLAAAERLR 384

>pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 87/219 (39%), Gaps = 36/219 (16%)
Query: 7   TKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 66
            KK    +I+DEVY  LV+ +     + V      ++ +   SK   + GWR+G+L++S+
Sbjct: 203 AKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSE 262
Query: 67  PNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILRE 126
              +   +     H+ S    +  Y  L                K  E   S +    +E
Sbjct: 263 K--VATAVSKIQSHTTSCINTVAQYAAL----------------KALEVDNSYMVQTFKE 304
Query: 127 AADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAK 186
             +   +RLK++       +PEG+ ++ +    D                D +F  +L +
Sbjct: 305 RKNFVVERLKKMGVKFV--EPEGAFYLFFKVRGD----------------DVKFCERLLE 346
Query: 187 EESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAF 225
           E+ + ++PG       ++R++FA         L R++ F
Sbjct: 347 EKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDF 385

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	1e-71
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	3e-67
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	3e-24
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	7e-23
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	4e-22
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	8e-22
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	2e-21
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	2e-19
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	1e-18
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	1e-17
3ele_A	398	Amino transferase; RER070207001803, structural gen	2e-17
3nra_A	407	Aspartate aminotransferase; structural genomics, j	1e-16
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	2e-16
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	5e-16
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	6e-16
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	7e-16
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	1e-15
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	1e-15
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	1e-15
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	2e-15
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	4e-15
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	1e-14
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	2e-14
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	3e-14
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	5e-14
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	1e-13
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	1e-13
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	3e-13
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	4e-13
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	5e-13
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	2e-12
1vp4_A	425	Aminotransferase, putative; structural genomics, j	2e-12
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	5e-12
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	6e-12
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	1e-11
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	4e-11
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	6e-11
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	7e-11
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	3e-10
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	8e-10
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	9e-10
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	2e-09
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	3e-09
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	2e-08
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	4e-08
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	2e-07
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	3e-07
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	7e-07

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427

 Score =  223 bits (571), Expect = 1e-71
 Identities = 59/231 (25%), Positives = 103/231 (44%), Gaps = 22/231 (9%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           I     +  + ++ADE+YG +VF +  + P+    + VP+L+ G ++KRW+VPGWRLGW+
Sbjct: 216 ILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWI 275

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEEEFFSKI 120
           +  D   I  +        +S    +            T+  GA+  IL +T  EF+   
Sbjct: 276 LIHDRRDIFGNEIRDGLVKLS-QRILGP---------CTIVQGALKSILCRTPGEFYHNT 325

Query: 121 TDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEF 180
              L+  AD+C   L  IP +    +P G+M++M         + +         +D EF
Sbjct: 326 LSFLKSNADLCYGALAAIPGLRPV-RPSGAMYLM---------VGIEMEHFPEFENDVEF 375

Query: 181 ALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAK 231
             +L  E+S+  LP       +++R+   V          R++ F  +H  
Sbjct: 376 TERLVAEQSVHCLPATCFEYPNFIRVVITVPEVMMLEACSRIQEFCEQHYH 426

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416

 Score =  212 bits (541), Expect = 3e-67
 Identities = 63/237 (26%), Positives = 103/237 (43%), Gaps = 31/237 (13%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFG----NTHFVPMGVFGSIVPVLTLGSISKRWIVPGWR 58
           I    ++L + + +DE+Y  +VF     N  F  +  F + VP + LG  +K  +VPGWR
Sbjct: 202 IVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWR 261

Query: 59  LGWLVTSDPNGILQDL--GVAFFHSISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEE 114
           LGWL+  DP+G       G+     +                  TV   A+ + L  T +
Sbjct: 262 LGWLLYVDPHGNGPSFLEGLKRVGMLVCGP-------------CTVVQAALGEALLNTPQ 308

Query: 115 EFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGI 174
           E   +I   + E+A    + + E   +     P G+M++M          +++      I
Sbjct: 309 EHLDQIVAKIEESAMYLYNHIGECIGLAPTM-PRGAMYLM---------SRIDLEKYRDI 358

Query: 175 NSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAK 231
            +D EF  KL +EE++ VLPG       + R+T       +   + R+KAF  RHA 
Sbjct: 359 KTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQRHAA 415

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406

 Score = 98.4 bits (246), Expect = 3e-24
 Identities = 48/224 (21%), Positives = 83/224 (37%), Gaps = 26/224 (11%)

Query: 11  GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI 70
            I VI+DE+Y  + +   H +  G     VPV+ +  +SK +   GWRLG++   DP   
Sbjct: 207 EIPVISDEIYDLMTYEGEH-ISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENK 265

Query: 71  LQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADI 130
           L ++  A        +R+        +      A+  +      ++  +    L+E  D 
Sbjct: 266 LSEVREA--IDRLARIRL------CPNTPAQFAAIAGL--TGPMDYLKEYMKKLKERRDY 315

Query: 131 CCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESI 190
              RL EIP I+   KP+G+ ++                      +D EF L +     +
Sbjct: 316 IYKRLNEIPGISTT-KPQGAFYIFPKIEV------------GPWKNDKEFVLDVLHNAHV 362

Query: 191 IVLPGITVGLK--DWLRITFAVEPSAFEIGLGRMKAFYYRHAKK 232
           + + G   G       R  F       E  + R + F     K+
Sbjct: 363 LFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKERLKE 406

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498

 Score = 95.2 bits (237), Expect = 7e-23
 Identities = 43/243 (17%), Positives = 91/243 (37%), Gaps = 19/243 (7%)

Query: 3   IEETTKKLGIMVIADEVYGHLVF-GNTHFVPM--------GVFGSIVPVLTLGSISKRWI 53
           +     +  + ++ADEVY   V+  +  F             + S V + +  S SK ++
Sbjct: 260 VIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYM 319

Query: 54  VP-GWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKT 112
              G+R G++   + +  ++   +    S+ L   +     +   V   V       + +
Sbjct: 320 GECGYRGGYMEVINLHPEIKG-QLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFS 378

Query: 113 EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLE 172
            E     +   L + A +  D   ++P I C    +G+M+             +  +   
Sbjct: 379 RE--KESVLGNLAKKAKLTEDLFNQVPGIHCNP-LQGAMYAF--PRIFIPAKAVEAAQAH 433

Query: 173 GINSDTEFALKLAKEESIIVLPGITVGLKDW---LRITFAVEPSAFEIGLGRMKAFYYRH 229
            +  D  + +KL +E  I V+PG   G ++     R+T        +  L ++K F+   
Sbjct: 434 QMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINF 493

Query: 230 AKK 232
            +K
Sbjct: 494 LEK 496

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375

 Score = 92.2 bits (230), Expect = 4e-22
 Identities = 42/225 (18%), Positives = 87/225 (38%), Gaps = 34/225 (15%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 67
            ++G  +++DEVY      +   +   V+      + + S+SK + +PG R+GW+     
Sbjct: 184 SEVGAYILSDEVYRSFSELDVPSII-EVYDK---GIAVNSLSKTYSLPGIRIGWVAA--N 237

Query: 68  NGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREA 127
           + +   L               DY ++   V+  + A   +     +E   +   IL E 
Sbjct: 238 HQVTDIL-----------RDYRDYTMICAGVFDDLVAQLAL--AHYQEILERNRHILEEN 284

Query: 128 ADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKE 187
             I    ++E P ++  + P       +          +  +         +F L+L +E
Sbjct: 285 LAILDQWIEEEPLVSYIR-PAVV-STSF----------VKIA---VDMPMEDFCLQLLQE 329

Query: 188 ESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKK 232
             ++++PG       ++R+ FA E      GL ++  F  R  K+
Sbjct: 330 HGVLLVPGNRFERDGYVRLGFACEQETLIKGLEKLSQFLRRFDKE 374

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500

 Score = 92.2 bits (229), Expect = 8e-22
 Identities = 43/244 (17%), Positives = 87/244 (35%), Gaps = 22/244 (9%)

Query: 3   IEETTKKLGIMVIADEVYGHLVF-GNTHFV-------PMGVFGSIVPVLTLGSISKRWI- 53
           I +  K  G++++ADEVY   ++  N  F         +G     +P+++  S+SK +  
Sbjct: 262 IVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYG 321

Query: 54  VPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTE 113
             G R G+   +  +  +++      + I+ ++ +   +         +       E   
Sbjct: 322 ECGKRGGYFEITGFSAPVREQ----IYKIA-SVNLCSNITGQILASLVMNPPKASDESYA 376

Query: 114 --EEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLL 171
             +     I   L   A        ++  ITC +  EG+M+V            +  +  
Sbjct: 377 SYKAEKDGILASLARRAKALEHAFNKLEGITCNE-AEGAMYVF--PQICLPQKAIEAAKA 433

Query: 172 EGINSDTEFALKLAKEESIIVLPGITVGLKDW---LRITFAVEPSAFEIGLGRMKAFYYR 228
                D  +AL+L +   I+V+PG   G        R T   +       + R   F+  
Sbjct: 434 ANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEA 493

Query: 229 HAKK 232
              +
Sbjct: 494 FMSE 497

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428

 Score = 90.8 bits (226), Expect = 2e-21
 Identities = 41/233 (17%), Positives = 84/233 (36%), Gaps = 42/233 (18%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP--------VLTLGSISKRWIVPGWRL 59
            +  I ++ DE+Y   VF    FV +                V  + S+SK   +PG+R+
Sbjct: 218 NQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRV 277

Query: 60  GWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTE--EEFF 117
           G + + + + +     ++ F  +S                 T   +  +L   +  + F 
Sbjct: 278 GIIYSFNDDVVNCARKMSSFGLVST---------------QTQYFLAAMLSDEKFVDNFL 322

Query: 118 SKITDILREAADICCDRLKE--IPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGIN 175
            +    L +      + L+   I C+    K    +F          LL+ +       +
Sbjct: 323 RESAMRLGKRHKHFTNGLEVVGIKCL----KNNAGLFCWMDLRP---LLRES-----TFD 370

Query: 176 SDTEFALKLAKEESIIVLPGITVGLKD--WLRITFAV-EPSAFEIGLGRMKAF 225
           S+      +  +  + V PG +   ++  W R+ FA  +    +I L R++ F
Sbjct: 371 SEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRF 423

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435

 Score = 85.1 bits (211), Expect = 2e-19
 Identities = 42/235 (17%), Positives = 88/235 (37%), Gaps = 44/235 (18%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP----------VLTLGSISKRWIVPGW 57
           +  GI +I+DE+Y    F +  F+ +                  V  + S+SK   +PG+
Sbjct: 221 EDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGF 280

Query: 58  RLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTE--EE 115
           R+G + ++D   +     ++ F  +S                 T   +  +L   +  + 
Sbjct: 281 RVGAIYSNDDMVVAAATKMSSFGLVSS---------------QTQHLLSAMLSDKKLTKN 325

Query: 116 FFSKITDILREAADICCDRLKE--IPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEG 173
           + ++    L++        L++  I C+         +F          LL+ N      
Sbjct: 326 YIAENHKRLKQRQKKLVSGLQKSGISCL----NGNAGLFCWVDMRH---LLRSN-----T 373

Query: 174 INSDTEFALKLAKEESIIVLPGITVGLKD--WLRITFA-VEPSAFEIGLGRMKAF 225
             ++ E   K+  E  + + PG +    +  W R+ FA +     ++ + R+KAF
Sbjct: 374 FEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAF 428

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388

 Score = 82.6 bits (205), Expect = 1e-18
 Identities = 40/237 (16%), Positives = 84/237 (35%), Gaps = 71/237 (29%)

Query: 11  GIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLGWLV-- 63
           G+ V++DE+Y  +++ +   + +   G+  P      +     +K + + GWR+G+L   
Sbjct: 196 GLWVLSDEIYEKILYDDAQHLSI---GAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGP 252

Query: 64  --------------TSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQIL 109
                         TS+     Q   +A     +     D                   +
Sbjct: 253 VPLVKAATKIQGHSTSNVCTFAQYGAIA-----AYENSQDC------------------V 289

Query: 110 EKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVM-YCGSEDKCLLKLNY 168
           ++    F         E      D L  +P + CP KP+G+ ++                
Sbjct: 290 QEMLAAF--------AERRRYMLDALNAMPGLECP-KPDGAFYMFPSIA----------- 329

Query: 169 SLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAF 225
              +   S  +F  +L  +  +  +PG   G  D +R+++A +    + G+ R++ F
Sbjct: 330 ---KTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKF 383

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427

 Score = 80.0 bits (197), Expect = 1e-17
 Identities = 29/215 (13%), Positives = 69/215 (32%), Gaps = 10/215 (4%)

Query: 12  IMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL 71
           ++     +Y  + +   H+ P  +       + L ++SK     G R GW +  D + + 
Sbjct: 216 VIKGCKSIYDMVYYWP-HYTP--IKYKADEDILLFTMSKFTGHSGSRFGWALIKDES-VY 271

Query: 72  QDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADIC 131
            +L      +     R      L   V   V A+ +  + T  +  +     LRE     
Sbjct: 272 NNLLNYMTKNTEGTPRETQLRSL--KVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI 329

Query: 132 CDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESII 191
              L +    +  + P+      +            Y+ ++    + +   +  +   I 
Sbjct: 330 TALLDQSDRFSYQELPQSEYCNYFRRMRPPSPS---YAWVKCEWEEDKDCYQTFQNGRIN 386

Query: 192 VLPGITVGL-KDWLRITFAVEPSAFEIGLGRMKAF 225
              G+       ++R++       F+  +  +K  
Sbjct: 387 TQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDM 421

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398

 Score = 79.1 bits (196), Expect = 2e-17
 Identities = 48/229 (20%), Positives = 83/229 (36%), Gaps = 51/229 (22%)

Query: 12  IMVIADEVYGHLVFGNTHFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLGWLVTSD 66
           I +IADE Y  +V+              V       L   S SK   +PG R+G+++  D
Sbjct: 212 IFIIADEPYREIVYDGIKV-------PFVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPD 264

Query: 67  PNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDIL-- 124
                          +     +   +  +      V A P + +K   +      DI   
Sbjct: 265 E--------------VYDKAELYAAVCGAGRALGYVCA-PSLFQKMIVKCQGATGDINAY 309

Query: 125 REAADICCDRLKEIPCITCPKKPEGS--MFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
           +E  D+  + L  I    C  KP+G+  MFV       K L           +    F  
Sbjct: 310 KENRDLLYEGLTRIG-YHCF-KPDGAFYMFV-------KAL----------EDDSNAFC- 349

Query: 183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAK 231
           + AKEE ++++     G   W+RI++ V+    +  +   +  Y ++ K
Sbjct: 350 EKAKEEDVLIVAADGFGCPGWVRISYCVDREMIKHSMPAFEKIYKKYNK 398

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407

 Score = 77.2 bits (191), Expect = 1e-16
 Identities = 34/240 (14%), Positives = 62/240 (25%), Gaps = 75/240 (31%)

Query: 11  GIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLGWLV-- 63
           G  VIAD++Y  L +    +       +        V+T+   SK   + G+RLG     
Sbjct: 212 GATVIADQLYSRLRYAGASYTH---LRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGS 268

Query: 64  --------------TSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQIL 109
                         +    G  Q +          +                       +
Sbjct: 269 RAIIARMEKLQAIVSLRAAGYSQAVLRG-----WFDEAPGW------------------M 305

Query: 110 EKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGS--MFVMYCGSEDKCLLKLN 167
           E              +   D     L+    +     P+    +F               
Sbjct: 306 EDRIARH--------QAIRDELLHVLRGCEGVFAR-TPQAGSYLFP-------------- 342

Query: 168 YSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAF 225
             L +   +  EF   L  +  ++V PG        D +R+ F+ +  A      R+   
Sbjct: 343 -RLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTL 401

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409

 Score = 76.1 bits (188), Expect = 2e-16
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 47/230 (20%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP--VLTLGSISKRWIVPGWRLGWLVTS 65
           ++ G+ +I DEVY  +VF       +    SI    V+ + S+SK++   G R+G L+T 
Sbjct: 204 ERHGLFLIVDEVYSEIVFRGEFASAL----SIESDKVVVIDSVSKKFSACGARVGCLIT- 258

Query: 66  DPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILR 125
             N  L    +                  +  +   +G+V  +    ++ FF  + +  R
Sbjct: 259 -RNEELISHAMKLAQGRL-----------APPLLEQIGSVGLL--NLDDSFFDFVRETYR 304

Query: 126 EAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLA 185
           E  +    +L+E        KP G+ ++                    +    EFA  + 
Sbjct: 305 ERVETVLKKLEEHGLKRFT-KPSGAFYITAELP---------------VEDAEEFARWML 348

Query: 186 KE-----ESIIVLPGITVGL-----KDWLRITFAVEPSAFEIGLGRMKAF 225
            +     E+ +V P     L     K  +RI   +E       +  +   
Sbjct: 349 TDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEG 398

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444

 Score = 75.1 bits (185), Expect = 5e-16
 Identities = 34/240 (14%), Positives = 80/240 (33%), Gaps = 51/240 (21%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           + E  K+  I +I D  YG       +      + +    +   S+SK   +PG R G +
Sbjct: 231 LAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDN--NTILCFSLSK-IGLPGMRTGII 287

Query: 63  VTSDPNGILQDL----GVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFS 118
           V      +++ +     V           +   L+ ++ +              ++   +
Sbjct: 288 VA--DAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRI--------------KQLSDN 331

Query: 119 KITDILREAADICCDRLKEIPC---ITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGIN 175
           +I    ++ A +    LK+      +    KPEG++F+                  + + 
Sbjct: 332 EIKPFYQKQATLAVKLLKQALGDYPLMIH-KPEGAIFLWLW--------------FKDLP 376

Query: 176 SDTEFALKLAKEESIIVLPG----ITVGLKDW------LRITFAVEPSAFEIGLGRMKAF 225
             T    +  K +  +++P       V + D+      +R++ A +      G+  +   
Sbjct: 377 ISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEV 436

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411

 Score = 75.0 bits (185), Expect = 6e-16
 Identities = 51/253 (20%), Positives = 83/253 (32%), Gaps = 63/253 (24%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-----VLTLGSISKRWIVPGW 57
           I E      ++VI DEVY HLVF +   +P+  F           +T+ S +K +   GW
Sbjct: 185 IAEIAVAANLVVITDEVYEHLVFDHARHLPLAGF----DGMAERTITISSAAKMFNCTGW 240

Query: 58  RLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVG----AVPQILEKTE 113
           ++GW     P  ++  +  A             YL      Y        AV   L+  E
Sbjct: 241 KIGWACG--PAELIAGVRAA--K---------QYL-----SYVGGAPFQPAVALALDT-E 281

Query: 114 EEFFSKITDILREAADICCDRLKEI--PCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLL 171
           + + + + + LR   D     L EI            G+ F+             +   L
Sbjct: 282 DAWVAALRNSLRARRDRLAAGLTEIGFAVH----DSYGTYFLC-----------ADPRPL 326

Query: 172 EGINSDTEFALKLAKEESIIVLPG-------------ITVGLKDWLRITFAVEPSAFEIG 218
            G +  TEF   L ++  +  +P                      +R TF       +  
Sbjct: 327 -GYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEA 385

Query: 219 LGRMKAFYYRHAK 231
           + R+     R A 
Sbjct: 386 IRRLSVLAERPAT 398

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385

 Score = 74.5 bits (184), Expect = 7e-16
 Identities = 40/233 (17%), Positives = 75/233 (32%), Gaps = 66/233 (28%)

Query: 11  GIMVIADEVYGHLVFGNTHFVPMGVFGSIVP--VLTLGSISKRWIVPGWRLGWLV----- 63
              +++DE+Y HL++   HF P    G + P   LT+   +K + + GWR+G+       
Sbjct: 197 DFYLVSDEIYEHLLYEGEHFSP----GRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEV 252

Query: 64  -----------TSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKT 112
                      T+ P+ I Q   +      +L  +      +  +               
Sbjct: 253 IKAMASVSRQSTTSPDTIAQWATLE-----ALTNQEASRAFVEMAR-------------- 293

Query: 113 EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLE 172
            E +        R   D+  + L  +  +    +P G+ +V                   
Sbjct: 294 -EAY--------RRRRDLLLEGLTALG-LKAV-RPSGAFYV--------------LMDTS 328

Query: 173 GINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAF 225
            I  D   A +   E  + V+PG        +R+++A         L R    
Sbjct: 329 PIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARV 381

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 39/243 (16%), Positives = 64/243 (26%), Gaps = 36/243 (14%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-------VLTLGSISKRWIVP 55
           I E   K  ++VI D  Y  + F   +  P G               +   S SK +   
Sbjct: 207 IGELATKHDVIVIEDLAYFGMDFRKDYSHP-GEPLYQPSVANYTDNYILALSSSKAFSYA 265

Query: 56  GWRLGWLVTSDP--NGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQI--LEK 111
           G R+G L+ S         DL  +F             L    S  T          L+ 
Sbjct: 266 GQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKA 325

Query: 112 TEE--EFFSKITDILREAADICCDRLKE-----IPCITCPKKPEGSMFVMYCGSEDKCLL 164
             +    F          A I      +     +       +P    F    G       
Sbjct: 326 CNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGN-EPLADGFYFTVGY------ 378

Query: 165 KLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKD--WLRITFAVEPSAFEIGLGRM 222
                  +G++S  +   K  +     +    T   ++      T  +  S F     R+
Sbjct: 379 -------KGMDSS-KLIEKFVRYGMCAITLKTTGSKRNEAMRICTSLLPESQFPDLEKRL 430

Query: 223 KAF 225
           +  
Sbjct: 431 QML 433

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447

 Score = 73.9 bits (182), Expect = 1e-15
 Identities = 47/241 (19%), Positives = 82/241 (34%), Gaps = 41/241 (17%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-----VLTLGSISKRWIVPGW 57
           +     K  +++I+DEVY HL F ++         ++ P      LT+GS  K +   GW
Sbjct: 226 LGNICVKHNVVIISDEVYEHLYFTDSFTRIA----TLSPEIGQLTLTVGSAGKSFAATGW 281

Query: 58  RLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVG----AVPQILEKTE 113
           R+GW V S    +L     A  H+                 + +      A    +    
Sbjct: 282 RIGW-VLSLNAELLS--YAAKAHTR--------------ICFASPSPLQEACANSINDAL 324

Query: 114 EE-FFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLE 172
           +  +F K+         I      E+  +     PEG+ FV+   S+ K      Y    
Sbjct: 325 KIGYFEKMRQEYINKFKIFTSIFDELG-LPYT-APEGTYFVLVDFSKVKIPEDYPYPEEI 382

Query: 173 GINS-DTEFALKLAKEESIIVLPGI-------TVGLKDWLRITFAVEPSAFEIGLGRMKA 224
                D   +  L  E  ++ +P             ++ LR     + +  E  + R+K 
Sbjct: 383 LNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAYLENAVERLKL 442

Query: 225 F 225
            
Sbjct: 443 L 443

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391

 Score = 73.7 bits (182), Expect = 1e-15
 Identities = 42/231 (18%), Positives = 86/231 (37%), Gaps = 46/231 (19%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           + E  +  G   I+DE+Y  + +       + +         + S SK + + GWR+GW+
Sbjct: 186 LIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECY---VINSFSKYFSMTGWRVGWM 242

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAV-----PQILEKTEEEFF 117
           V   P   ++ +            R+   + +     + V A+        L+   + + 
Sbjct: 243 VV--PEDQVRVV-----------ERIAQNMFICAPHASQVAALAALDCDAELQANLDVY- 288

Query: 118 SKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSD 177
                  +    +  +RL +         P+G+ F +Y           + S L   +  
Sbjct: 289 -------KANRKLMLERLPKAGFTRIA-PPDGA-FYVYA----------DVSDL--TDDS 327

Query: 178 TEFALKLAKEESIIVLPGI---TVGLKDWLRITFAVEPSAFEIGLGRMKAF 225
             FA ++ ++  + V PG+          LR ++A   +  E GL R++AF
Sbjct: 328 RAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAF 378

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546

 Score = 73.3 bits (180), Expect = 2e-15
 Identities = 42/259 (16%), Positives = 77/259 (29%), Gaps = 45/259 (17%)

Query: 11  GIMVIADEVYGHLVFGNTHFVPMGVFGSIVP--VLTLGSISKRWIVPGWRLGWLV----- 63
            +M++ D+VYG                +I P   L + S SK +   GWRLG +      
Sbjct: 280 DLMILTDDVYGTFADDFQSLF------AICPENTLLVYSFSKYFGATGWRLGVVAAHQQN 333

Query: 64  -----------TSDPNGILQ-DLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQI--- 108
                      +       +    +    S+    R+          +T   + PQ    
Sbjct: 334 VFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQM 393

Query: 109 -------LEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE-- 159
                  L    +E+   +  ++R        R   +P +          + +    +  
Sbjct: 394 ALFSLFALMDEADEYKHTLKQLIRRRETT-LYRELGMPPLRDE--NAVDYYTLIDLQDVT 450

Query: 160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDW-LRITFAVEP----SA 214
            K   +         +S  +   ++A E  I++LPG   G      R + A       +A
Sbjct: 451 AKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLANLNEYEYAA 510

Query: 215 FEIGLGRMKAFYYRHAKKQ 233
               L +M    Y     Q
Sbjct: 511 IGRALRKMADELYAEYSGQ 529

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386

 Score = 72.6 bits (179), Expect = 4e-15
 Identities = 47/238 (19%), Positives = 84/238 (35%), Gaps = 54/238 (22%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-----VLTLGSISKRWIVPGW 57
           + +      I VI+DEVY H+ F       +       P      + + S  K + + GW
Sbjct: 188 LWQAIAGHEIFVISDEVYEHINFSQQGHASVLAH----PQLRERAVAVSSFGKTYHMTGW 243

Query: 58  RLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVG----AVPQILEKTE 113
           ++G+ V   P  I  ++     H          YL      ++       A+  +L   E
Sbjct: 244 KVGYCVA--PAPISAEIRKV--H---------QYL-----TFSVNTPAQLALADMLRA-E 284

Query: 114 EEFFSKITDILREAADICCDRLKEI--PCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLL 171
            E +  + D  R+  DI  + L E     +      EG+ F++           ++YS +
Sbjct: 285 PEHYLALPDFYRQKRDILVNALNESRLEIL----PCEGTYFLL-----------VDYSAV 329

Query: 172 EGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFAVEPSAFEIGLGRMKAF 225
                D EF   L +E  +  +P             +R+ FA + S       R++  
Sbjct: 330 -STLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQL 386

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533

 Score = 71.4 bits (175), Expect = 1e-14
 Identities = 51/263 (19%), Positives = 93/263 (35%), Gaps = 50/263 (19%)

Query: 12  IMVIADEVYGHLVFGNTHFVPMGVFGSIVP--VLTLGSISKRWIVPGWRLGWL------- 62
           +M+I+DEVYG  V             S+VP   + + S SK +   GWRLG +       
Sbjct: 279 LMIISDEVYGAFVPNFKSIY------SVVPYNTMLVYSYSKLFGCTGWRLGVIALNEKNV 332

Query: 63  ----------------------VTSDPNGILQ-DLGVAFFHSISLNMR--MDDYLLLSES 97
                                 V  DP+ +   D   A   SI L     +     + E+
Sbjct: 333 FDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEA 392

Query: 98  VYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGS--MFVMY 155
           +++    +      +++ +      ++ E  D   D + + P               +  
Sbjct: 393 LFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAM-QAPKDETD--TNTHYYSLIDI 449

Query: 156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDW-LRITFAVEPSA 214
               +K   K     L       +F LKLA++  ++++ G+  G K   LR++ A  P+ 
Sbjct: 450 YRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQANLPTE 509

Query: 215 FEIGLGR-MKAF---YYRHAKKQ 233
               +G+ +      YY   K+ 
Sbjct: 510 DYALIGKQVLELLKEYYEEFKQN 532

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 45/247 (18%), Positives = 86/247 (34%), Gaps = 52/247 (21%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-----VLTLGSISKRWIVPGW 57
           +    KK  ++ ++DEVY H+VF     + +       P      +T+GS  K + + GW
Sbjct: 207 VANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTL----PGMWERTITIGSAGKTFSLTGW 262

Query: 58  RLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVG----AVPQILEKTE 113
           ++GW     P  +L++L +   H                 VYT       A+    E   
Sbjct: 263 KIGWAYG--PEALLKNLQMV--H---------QNC-----VYTCATPIQEAIAVGFETEL 304

Query: 114 E------EFFSKITDILREAADICCDRLKEI--PCITCPKKPEGSMFVMYCGSEDKCLLK 165
           +       +F+ I+  L    D     L E+          P+G  F++   S      K
Sbjct: 305 KRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPT----VPQGGYFMVADWSSLD--SK 358

Query: 166 LNYSLLEGINSDTEFALKLAKEESIIVLPG-------ITVGLKDWLRITFAVEPSAFEIG 218
           ++ +       D  F   + K   +  +P             +D++R  F  +    +  
Sbjct: 359 VDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKA 418

Query: 219 LGRMKAF 225
              ++ +
Sbjct: 419 AEILRKW 425

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370

 Score = 69.9 bits (172), Expect = 3e-14
 Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 34/225 (15%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           I E   +    +I+DE+Y  LV+    +  +    ++   + +   SK + + GWR+G++
Sbjct: 175 IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYV 234

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
           ++   + I++   +               L +S    +   A+ +  EK  E   + +  
Sbjct: 235 IS--NDEIIE--AILKLQQ---------NLFISAPTISQYAAL-KAFEKETEREINSMIK 280

Query: 123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
                  +    +K+         P G+ +V     ED                  EFA 
Sbjct: 281 EFDRRRRLVLKYVKDFG-WEVN-NPIGAYYVFPNIGED----------------GREFAY 322

Query: 183 KLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAF 225
           KL KE+ + + PGI  G   K+++RI++A      + GL R+K F
Sbjct: 323 KLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEF 367

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410

 Score = 69.6 bits (171), Expect = 5e-14
 Identities = 44/247 (17%), Positives = 79/247 (31%), Gaps = 53/247 (21%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-----VLTLGSISKRWIVPGW 57
           I +   K   + I+DEVY  LV+     V +       P      +T+GS  K + V GW
Sbjct: 192 IADLCVKHDTLCISDEVYEWLVYTGHTHVKIATL----PGMWERTITIGSAGKTFSVTGW 247

Query: 58  RLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVG----AVPQILE--- 110
           +LGW +   P  +++   +                      YT       A+ +      
Sbjct: 248 KLGWSIG--PAHLIK--HLQTVQ---------QNS-----FYTCATPLQAALAEAFWIDI 289

Query: 111 ---KTEEEFFSKITDILREAADICCDRLKEI--PCITCPKKPEGSMFVMYCGSEDKCLLK 165
                 E +F+ +   L    D     L  +    I     P+G  F++   S    L  
Sbjct: 290 KRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPI----VPDGGYFIIADVSS---LGA 342

Query: 166 LNYSLLEGINSDTEFALKLAKEESIIVLPG-------ITVGLKDWLRITFAVEPSAFEIG 218
               +      D +F   + K + +  +P             +  +R  F  + S  +  
Sbjct: 343 DLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAA 402

Query: 219 LGRMKAF 225
               +A+
Sbjct: 403 EEIFRAW 409

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389

 Score = 68.3 bits (168), Expect = 1e-13
 Identities = 44/239 (18%), Positives = 85/239 (35%), Gaps = 68/239 (28%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           +    KK    +I+DEVY  LV+ +     + V      ++ +   SK   + GWR+G+L
Sbjct: 199 LVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYL 258

Query: 63  V----------------TSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVP 106
           +                TS  N + Q                          Y  + A+ 
Sbjct: 259 ISSEKVATAVSKIQSHTTSCINTVAQ--------------------------YAALKALE 292

Query: 107 QILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKL 166
                  + F        +E  +   +RLK++  +    +PEG+ ++ +    D      
Sbjct: 293 VDNSYMVQTF--------KERKNFVVERLKKMG-VKFV-EPEGAFYLFFKVRGD------ 336

Query: 167 NYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAF 225
                     D +F  +L +E+ + ++PG       ++R++FA         L R++ F
Sbjct: 337 ----------DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDF 385

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 42/250 (16%), Positives = 88/250 (35%), Gaps = 57/250 (22%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-----VLTLGSISKRWIVPGW 57
           +    ++  ++ I DEVY  +V+     + +       P      LT+GS  K +   GW
Sbjct: 199 VASLCQQHDVVCITDEVYQWMVYDGHQHISIASL----PGMWERTLTIGSAGKTFSATGW 254

Query: 58  RLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVG----AVPQILEKTE 113
           ++GW++   P+ I++ L     H                 V+        AV +  E+ +
Sbjct: 255 KVGWVLG--PDHIMKHLRTV--H---------QNS-----VFHCPTQSQAAVAESFEREQ 296

Query: 114 ------EEFFSKITDILREAADICCDRLKEI--PCITCPKKPEGSMFVMYCGSEDKCLLK 165
                   +F +    ++   D     L+ +    I     P+GS F++   S+     K
Sbjct: 297 LLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPI----IPQGSYFLITDISD----FK 348

Query: 166 LNYSLLEGINS---DTEFALKLAKEESIIVLPG-------ITVGLKDWLRITFAVEPSAF 215
                L G      D  F   + K + ++ +P               ++R  F  + +  
Sbjct: 349 RKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATL 408

Query: 216 EIGLGRMKAF 225
           +    +++ +
Sbjct: 409 QAMDEKLRKW 418

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407

 Score = 67.3 bits (165), Expect = 3e-13
 Identities = 45/225 (20%), Positives = 84/225 (37%), Gaps = 42/225 (18%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 67
            K  +++I D  Y  + +     VP+    +   V+  G++SK  +  G+R+GW++    
Sbjct: 205 SKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKV-LGTGFRIGWIIAEGE 263

Query: 68  NGILQDLGVA----FFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDI 123
             IL+ + +      F + +++  +    L                   E+         
Sbjct: 264 --ILKKVLMQKQPIDFCAPAISQYIALEYLKRGYF--------------EKYHLEGALLG 307

Query: 124 LREAADICCDRL-KEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
            +E  DI    L   +P      KP   MFVM           L     EG +    FA 
Sbjct: 308 YKEKRDIMLKALENHLPNAEF-TKPIAGMFVM---------FFLP----EGADG-ISFAN 352

Query: 183 KLAKEESIIVLPG----ITVGLKDWLRITFA-VEPSAFEIGLGRM 222
           +L + E ++V+PG         K+ +R+ F+        IG+ ++
Sbjct: 353 ELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKL 397

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381

 Score = 66.4 bits (163), Expect = 4e-13
 Identities = 43/245 (17%), Positives = 76/245 (31%), Gaps = 60/245 (24%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP--VLTLGSISKRWIVPGWRLG 60
           I    +   + +I+DEVY  L +G              P    T+GS  KR    G+R+G
Sbjct: 177 IARLARAHDLFLISDEVYDELYYGERPRRLR----EFAPERTFTVGSAGKRLEATGYRVG 232

Query: 61  WLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVG----AVPQILEK-TEEE 115
           W+V   P   +  L                +       ++        V + L+    E 
Sbjct: 233 WIVG--PKEFMPRLAGM--R---------QWT-----SFSAPTPLQAGVAEALKLARREG 274

Query: 116 FFSKITDILREAADICCDRLKEI--PCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEG 173
           F+  + +  R   D+    L+ +          PEG+ F+M                   
Sbjct: 275 FYEALREGYRRRRDLLAGGLRAMGLRVY----VPEGTYFLM-----------AELPGW-- 317

Query: 174 INSDTEFALKLAKEESIIVLPGITV-----GLKDWLRITFAVEPSAFEIGLGRMKAFYYR 228
                  A +L +E  + ++P  +        KD  R  F        + L R+      
Sbjct: 318 ------DAFRLVEEARVALIPA-SAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVNS 370

Query: 229 HAKKQ 233
             + +
Sbjct: 371 PREAE 375

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417

 Score = 66.5 bits (163), Expect = 5e-13
 Identities = 34/242 (14%), Positives = 74/242 (30%), Gaps = 53/242 (21%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 67
            +  I ++ D  YG    G   F       +   ++   S+SK   +PG R G ++ +D 
Sbjct: 210 NQHNIPLVIDNAYGVPFPG-IIFSEARPLWNP-NIILCMSLSK-LGLPGSRCGIIIANDK 266

Query: 68  NGILQDL----GVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDI 123
              +  +    G+       +   M   ++           + ++ E   + F+      
Sbjct: 267 --TITAIANMNGIISLAPGGMGPAMMCEMIKR-------NDLLRLSETVIKPFY------ 311

Query: 124 LREAADICCDRLKE---IPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEF 180
             +        ++            KPEG++F+                  +     TE 
Sbjct: 312 -YQRVQQTIAIIRRYLSEERCLIH-KPEGAIFLW-------------LWFKDLPI-TTEL 355

Query: 181 ALKLAKEESIIVLPG---------ITVGLKDWLRITFAVEPSAFEIGLGRMKAF---YYR 228
             +  K   ++++PG                 +R+ +  EP   E G+  +       +R
Sbjct: 356 LYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILAEEIERAWR 415

Query: 229 HA 230
             
Sbjct: 416 EG 417

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389

 Score = 64.4 bits (158), Expect = 2e-12
 Identities = 40/239 (16%), Positives = 84/239 (35%), Gaps = 67/239 (28%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGWL---- 62
            +  ++VI+DEVY H ++ +     +     +    +T+   SK + + GWRLG++    
Sbjct: 190 VEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPS 249

Query: 63  ------------VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILE 110
                         + P   +Q          +L                      + +E
Sbjct: 250 WIIERMVKFQMYNATCPVTFIQYAAAK-----ALKDERSW----------------KAVE 288

Query: 111 KTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGS--MFVMYCGSEDKCLLKLNY 168
           +  +E+             +   RL E+  +    KP+G+  +F                
Sbjct: 289 EMRKEY--------DRRRKLVWKRLNEMG-LPTV-KPKGAFYIFP--------------- 323

Query: 169 SLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAF 225
            + +   +  +F+  + KE  + V+PG   G   + ++RI++A      E  + RM+  
Sbjct: 324 RIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERV 382

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 44/239 (18%), Positives = 87/239 (36%), Gaps = 47/239 (19%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 67
           +K  + ++ D+ YG L +      P+   G    V+ L + SK  + PG R+G +  S  
Sbjct: 218 EKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSK-VLAPGLRIGMVAGSKE 276

Query: 68  NGILQDLGVA----FFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDI 123
              ++ +  A       S ++  R+    L    +                E      ++
Sbjct: 277 --FIRKIVQAKQSADLCSPAITHRLAARYLERYDL---------------LEQLKPTIEL 319

Query: 124 LREAADICCDRLKE----IPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTE 179
            R    +  + L+E    IP +    K EG +F+          L L     EG ++  E
Sbjct: 320 YRRKRTVMLNALEEYFSDIPGVKW-VKSEGGLFIW---------LTLP----EGFDT-WE 364

Query: 180 FALKLAKEESIIVLPG----ITVGLKDWLRITFA-VEPSAFEIGLGRMKAFYYRHAKKQ 233
              + AK + +  +PG    +       +R++F          G+ R++     + K++
Sbjct: 365 M-FEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGKEK 422

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397

 Score = 63.4 bits (155), Expect = 5e-12
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 49/229 (21%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVF---GSIVPVLTLGSISKRWIVPGWRLGWLVT 64
            + G++V+ D+ Y  L FG      +           V+ LGS SK  + PG R+ + V 
Sbjct: 193 MERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSK-VLSPGLRVAFAVA 251

Query: 65  SDPNGILQDLGVA----FFHSISLNMRM-DDYLLLSESVYTTVGAVPQILEKTEEEFFSK 119
                 LQ L  A      H+  LN  +  + L   +  +               E   +
Sbjct: 252 HPE--ALQKLVQAKQGADLHTPMLNQMLVHELL---KEGF--------------SERLER 292

Query: 120 ITDILREAADICCDRL-KEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDT 178
           +  + RE A      L +E+P      +P+G MFV          ++L     +G+++  
Sbjct: 293 VRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVW---------MELP----KGLSA-E 338

Query: 179 EFALKLAKEESIIVLPG----ITVGLKDWLRITFA-VEPSAFEIGLGRM 222
               + A EE++  +PG       G ++ LR+++A ++      G+ R+
Sbjct: 339 GL-FRRALEENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRL 386

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448

 Score = 63.4 bits (155), Expect = 6e-12
 Identities = 43/225 (19%), Positives = 87/225 (38%), Gaps = 43/225 (19%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 67
            +   +V+ D+ YG L +       +    +   V+ LG+ SK  + PG+R+GW+V    
Sbjct: 247 SEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSK-ILAPGFRIGWMVGDPG 305

Query: 68  NGILQDLGVA----FFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDI 123
             I++ + +A       +      +    +    +               E+   +I   
Sbjct: 306 --IIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYL---------------EKHIPEIRKF 348

Query: 124 LREAADICCDRL-KEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
            +   D   + L + +P      KPEG MF+          + L     +GI  D++  L
Sbjct: 349 YKPRRDAMLEALEEFMPEGVKWTKPEGGMFIW---------VTLP----DGI--DSKKML 393

Query: 183 KLAKEESIIVLPG----ITVGLKDWLRITFA-VEPSAFEIGLGRM 222
           + A ++ +  +PG        +K+ +R+ F  V+      G+ R+
Sbjct: 394 ERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRL 438

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391

 Score = 62.7 bits (152), Expect = 1e-11
 Identities = 39/231 (16%), Positives = 74/231 (32%), Gaps = 32/231 (13%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGW 61
           +          VI D  Y        H+ P+          + L + SK     G R+GW
Sbjct: 177 VVNRPDDDEAKVIHDFAYYWP-----HYTPIT---RRQDHDIMLFTFSKITGHAGSRIGW 228

Query: 62  LVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILE-----KTEEEF 116
            +  D     + +     +SI ++          ES   T   +  + E        E F
Sbjct: 229 ALVKDKEVAKKMVEYIIVNSIGVS---------KESQVRTAKILNVLKETCKSESESENF 279

Query: 117 FSKITDILREAADICCDRLKEIPCITCPK-KPEGSMFVMYCGSEDKCLLKLNYSLLEGIN 175
           F    ++++   +   + +KE    T PK       +               ++ L G  
Sbjct: 280 FKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYP-----AFAWL-GTK 333

Query: 176 SDTEFALKLAKEESIIVLPGITVGL-KDWLRITFAVEPSAFEIGLGRMKAF 225
            +T+   +L +   ++   G   G  K  +R++       F + L R+   
Sbjct: 334 EETDLVSEL-RRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLANM 383

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404

 Score = 61.0 bits (149), Expect = 4e-11
 Identities = 37/226 (16%), Positives = 86/226 (38%), Gaps = 37/226 (16%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 67
           K     ++ D  YG   F   +   +         + + S+SK + + G+R+G+ V    
Sbjct: 211 KGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVG--N 268

Query: 68  NGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILR 125
             ++Q L    + +   +    +       ++  +   A+  +     ++F  + +++ +
Sbjct: 269 KDMIQALKK--YQT---HT---NA-----GMFGALQDAAIYAL--NHYDDFLEEQSNVFK 313

Query: 126 EAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLA 185
              D     L +          +G ++V          L+       G +S+ +F   L 
Sbjct: 314 TRRDRFEAMLAKADL-PFVH-AKGGIYV---------WLETP----PGYDSE-QFEQFLV 357

Query: 186 KEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRH 229
           +E+SI+V PG   G     ++RI+ A++    +    R+    Y +
Sbjct: 358 QEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAYLY 403

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376

 Score = 60.2 bits (147), Expect = 6e-11
 Identities = 48/222 (21%), Positives = 84/222 (37%), Gaps = 39/222 (17%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 67
           +K G+ +I D  Y   V+      P+ + G+   V+ L S+SK + + G+RLG+ +    
Sbjct: 188 RKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALG--S 245

Query: 68  NGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILR 125
              L  L           +   D+     + Y  V    V  +  KT +E       + R
Sbjct: 246 EEALARLER--VKG---VI---DF-----NQYAGVLRMGVEAL--KTPKEVVRGYARVYR 290

Query: 126 EAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLA 185
           E A    + LK +  ++    P  +M++                L EG++   EF L+L 
Sbjct: 291 ERALGMAEALKGV--LSLL-PPRATMYLW-------------GRLPEGVDDL-EFGLRLV 333

Query: 186 KEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAF 225
            E  + + PG   G   K ++RI              R++  
Sbjct: 334 -ERGVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREA 374

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412

 Score = 59.9 bits (146), Expect = 7e-11
 Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 47/234 (20%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSI--VP-----VLTLGSISKRWIVPGWRLG 60
           K+  +MV+ D  Y  +V+            SI  VP      +   ++SK + + GWR+G
Sbjct: 202 KQYDVMVVHDLAYADIVYDGWKAP------SIMQVPGAKDIAVEFFTLSKSYNMAGWRIG 255

Query: 61  WLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEEEFFS 118
           ++V      ++  L      S        DY       +T +   A+  +  + +++   
Sbjct: 256 FMVG--NPELVSALAR--IKS---YH---DY-----GTFTPLQVAAIAAL--EGDQQCVR 298

Query: 119 KITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDT 178
            I    ++  D+    L+E         P+ SM+V          +   Y+ L       
Sbjct: 299 DIARQYQQRRDVLVKGLREAGW-MVE-NPKASMYVW-------AKIPEPYAHL----GSL 345

Query: 179 EFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRHA 230
           EFA KL ++  + V PGI  G    D +R             +  +KA +    
Sbjct: 346 EFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAMFRADG 399

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 29/208 (13%), Positives = 49/208 (23%), Gaps = 47/208 (22%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-------VLTLGSISKRWIV- 54
                      + AD+ Y               F  +              S SK  I  
Sbjct: 199 AGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSK--ITF 256

Query: 55  PGWRLGWLVTSDPN--GILQDLGVAFFHSISLN-MRMDDYLLLSESVYTTVGAVPQILEK 111
            G  LG++ +S+ N   + + LG        +   R   +L                   
Sbjct: 257 AGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGL------------ 304

Query: 112 TEEEFFSKITDILREAADICCD----RLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLN 167
             E        I+        +     L E         P+G  F+              
Sbjct: 305 --EGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFIS------------- 349

Query: 168 YSLLEGINSDTEFALKLAKEESIIVLPG 195
               E +       +KLA+   + + P 
Sbjct: 350 LDTAEPVADRV---VKLAEAAGVSLTPA 374

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427

 Score = 57.0 bits (138), Expect = 8e-10
 Identities = 31/202 (15%), Positives = 51/202 (25%), Gaps = 46/202 (22%)

Query: 7   TKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP------VLTLGSISKRWIV-PGWRL 59
           T      V+ D  Y      +     + + G               S SK  I   G  +
Sbjct: 211 TAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSK--ITLAGAGV 268

Query: 60  GWLVTSDPN--GILQDLGVAFFHSISLN-MRMDDYLLLSESVYTTVGAVPQILEKTEEEF 116
            + +TS  N        G+       +N +    Y   +E V                  
Sbjct: 269 SFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGV---------------RAV 313

Query: 117 FSKITDILREAADICCDRL-KEIPCITCPK--KPEGSMFVMYCGSEDKCLLKLNYSLLEG 173
             K    L    +   + L   +      +   P G  F+                ++ G
Sbjct: 314 MRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFIS-------------LDVVPG 360

Query: 174 INSDTEFALKLAKEESIIVLPG 195
             S      +LAKE  I +   
Sbjct: 361 TASRV---AELAKEAGIALTGA 379

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422

 Score = 57.0 bits (138), Expect = 9e-10
 Identities = 29/207 (14%), Positives = 50/207 (24%), Gaps = 48/207 (23%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP------VLTLGSISKRWIV-P 55
            E +T      ++ D  Y      +   +   V               + S SK  I   
Sbjct: 205 AEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSK--ITHA 262

Query: 56  GWRLGWLVTSDPN--GILQDLGVAFFHSISLN-MRMDDYLLLSESVYTTVGAVPQILEKT 112
           G  + +  +S  N         V       LN +    +          V  +   +   
Sbjct: 263 GSGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFF-------GDVAGLKAHML-- 313

Query: 113 EEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMYCGSEDKCLLKLNY 168
                 K    L    +   + L               P G  F+               
Sbjct: 314 ------KHAASLAPKFERVLEILDSRLSEYGVAKW-TSPTGGYFIS-------------V 353

Query: 169 SLLEGINSDTEFALKLAKEESIIVLPG 195
            ++ G  S     ++LAKE  I +   
Sbjct: 354 DVVPGTASRV---VELAKEAGIALTGA 377

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 38/230 (16%), Positives = 73/230 (31%), Gaps = 48/230 (20%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 67
           +K   ++I D+ Y  L F                V+   S SK  I  G R+G+L    P
Sbjct: 221 RKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKI-ISSGLRIGFLTGPKP 279

Query: 68  NGILQDL----GVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDI 123
             +++ +     V+  H  + N  M   LL     +   G +  +          ++ D 
Sbjct: 280 --LIERVILHIQVSTLHPSTFNQLMISQLL---HEWGEEGFMAHV---------DRVIDF 325

Query: 124 LREAADICCDRLKEIPCITCPK-----KPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDT 178
                D       +              P   MF+          +K+        +   
Sbjct: 326 YSNQKDAILAAADK----WLTGLAEWHVPAAGMFLW---------IKVK----GINDV-K 367

Query: 179 EFALKLAKEESIIVLPGI-----TVGLKDWLRITFA-VEPSAFEIGLGRM 222
           E   + A +  +++LPG      +     +LR +F+   P   ++    +
Sbjct: 368 ELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVL 417

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 39/241 (16%), Positives = 70/241 (29%), Gaps = 51/241 (21%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSI--VP-----VLTLGSISKRWIVPGWRLG 60
           KK G +++ D  Y   +  +          SI  +P      +   S S      G RLG
Sbjct: 228 KKNGSIIVYDSAYAMYMSDDNP-------RSIFEIPGAEEVAMETASFSNYAGFTGVRLG 280

Query: 61  WLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKI 120
           W V   P  +L   G       +   R+        S  +  GA+   L     E   K+
Sbjct: 281 WTVI--PKKLLYSDGFPVAKDFN---RIICTCFNGASNISQAGAL-ACLTPEGLEAMHKV 334

Query: 121 TDILREAADICCDRLKEIPCITCPKKPEGSMFV------MYCGSEDKCLLKLNYSLLEGI 174
               +E  +I  D    +         + + +V          S                
Sbjct: 335 IGFYKENTNIIIDTFTSLGY-DVY-GGKNAPYVWVHFPNQ--SSW--------------- 375

Query: 175 NSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRHAKK 232
               +   ++ ++  ++  PG   G   + ++R++             R K  Y  H   
Sbjct: 376 ----DVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRFKQLYKHHHHH 431

Query: 233 Q 233
            
Sbjct: 432 H 432

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 40/238 (16%), Positives = 70/238 (29%), Gaps = 60/238 (25%)

Query: 8   KKLGIMVIADEVYGHLVFGNT-----HFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
            K   ++I DE Y  +              +    +   VL + S+SKR   PG R G++
Sbjct: 184 LKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFI 243

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEK------TEEEF 116
              D   +L+                  YL                ++K       ++  
Sbjct: 244 A-GDSR-LLEKYK-----------AFRAYL---------GYTSANAIQKASEAAWLDDRH 281

Query: 117 FSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINS 176
                +I      +     K             S +V          L         + +
Sbjct: 282 AEFFRNIYANNLKLARKIFKNTL------IYPYSFYVY---------LP--------VQN 318

Query: 177 DTEFALKLAKEESIIVLPGITVGL----KDWLRITFAVEPSAFEIGLGRMKAFYYRHA 230
              FA  L + E II LP + +G      D++R+    +    E  L  ++ +   HA
Sbjct: 319 GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYRENHA 376

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 23/238 (9%), Positives = 66/238 (27%), Gaps = 42/238 (17%)

Query: 1   FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPM-----GVFGSIVPVLTLGSISKRWIVP 55
                  K   ++ + D+ Y  L + + +   +      +  + +  + L   +K +   
Sbjct: 217 AIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAW 276

Query: 56  GWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAV-----PQILE 110
           G+R+G++     +   +++        +    +    + S  + T           +  +
Sbjct: 277 GFRVGFMTFGTSDQTTKEV------LEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFD 330

Query: 111 KTEEEFFSKITDILREAADICCDRLKE--IPCITCPKKPEGSMFVMYCGSEDKCLLKLNY 168
           K  E+    + +      ++                       F+               
Sbjct: 331 KEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYD----FNSGYFM--------------A 372

Query: 169 SLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA-VEPSAFEIGLGRMKAF 225
             +  ++ +      L  + SI V+          +RI F+ VE          +   
Sbjct: 373 IKVHDVDPE-ALRKHLIDKYSIGVIALNATD----IRIAFSCVEKDDIPHVFDSIAKA 425

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 39/201 (19%), Positives = 71/201 (35%), Gaps = 53/201 (26%)

Query: 8   KKLGIMVIADEVYGHLVFGNTH-----FVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
            K G ++ +DE Y  + F              +  S   +L   S+SKR  VPG R G++
Sbjct: 198 DKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFV 257

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVG-AVPQILEK------TEEE 115
              D   +L++                 Y           G A+   +++       +E+
Sbjct: 258 A-GDAE-LLKNFL-----------LYRTYH----------GSAMSIPVQRASIAAWDDEQ 294

Query: 116 FFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGIN 175
                  + +E  +     L+++  +   K P+ S ++          LK+         
Sbjct: 295 HVIDNRRLYQEKFERVIPILQQVFDV---KLPDASFYI---------WLKV------PDG 336

Query: 176 SDTEFALKLAKEESIIVLPGI 196
            D  FA  L ++ +I VLPG 
Sbjct: 337 DDLAFARNLWQKAAIQVLPGR 357

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 37/227 (16%), Positives = 67/227 (29%), Gaps = 39/227 (17%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSI--VP-----VLTLGSISKRWIVPGWRLG 60
            +  I+++ D  Y   +      +P     SI  +P      + + S SK     G RLG
Sbjct: 193 IEHEILILFDAAYSTFISDP--SLPK----SIFEIPDARFCAIEINSFSKPLGFAGIRLG 246

Query: 61  WLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKI 120
           W V   P  +    G      I    R         S+      V   L    +    + 
Sbjct: 247 WTVI--PQELTYADGHFV---IQDWERFLSTTFNGASIPAQEAGV-AGLSILPQL---EA 297

Query: 121 TDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEF 180
               RE +D+    L            E + ++    ++              I+   + 
Sbjct: 298 IHYYRENSDLLRKALLATGF-EVF-GGEHAPYLWVKPTQA------------NISD-RDL 342

Query: 181 ALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAF 225
                +E  I + PGI  G     ++R +   +         R++  
Sbjct: 343 FDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAACERLQMA 389

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 36/232 (15%), Positives = 74/232 (31%), Gaps = 40/232 (17%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSI--VP-----VLTLGSISKRWIVPGWRLG 60
           +K G +++ D  Y   +       P     +I  +P      +   S SK     G RLG
Sbjct: 239 RKNGSILVYDAAYALYISNP--DCPK----TIYEIPGADEVAIETCSFSKYAGFTGVRLG 292

Query: 61  WLVTSDPNGILQDLGVAFFHSISLNM-RMDDYLLLSESVYTTVGAVPQILEKTEEEFFSK 119
           W V      + + L  A    +  +  R+        S     G +   L+    +  + 
Sbjct: 293 WTV------VPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGL-ACLQPEGLKEMNA 345

Query: 120 ITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTE 179
           +    +E A I      E+   +     + + ++              +    G  S  +
Sbjct: 346 MIKFYKENAQILKTTFTEMGF-SVY-GGDDAPYI--------------WVGFPGKPS-WD 388

Query: 180 FALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRH 229
              ++ +  +I+  PG   G   + ++R +           + R K  Y + 
Sbjct: 389 VFAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENILEAVRRFKEAYGKR 440

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.96
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.96
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.95
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.95
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.95
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.95
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.95
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.94
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.94
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.94
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.94
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.94
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.93
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.93
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.93
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.93
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.93
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.93
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.93
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.93
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.93
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.93
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.93
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.93
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.93
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.93
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.93
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.93
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.93
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.93
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.92
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.92
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.92
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.92
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.92
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.92
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.92
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.92
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.92
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.92
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.92
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.92
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.92
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.92
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.92
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.92
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.91
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.91
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.91
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.85
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.91
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.91
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.9
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.9
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.9
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.9
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.89
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.89
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.89
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.89
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.89
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.88
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.88
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.88
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.88
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.88
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.88
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.88
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.88
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.87
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.87
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.87
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.86
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.86
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.86
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.86
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.86
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.85
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.84
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.84
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.83
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.8
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.79
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.78
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.78
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.78
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.77
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.77
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.77
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.77
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.77
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.76
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.76
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.75
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.75
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.75
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.75
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.74
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.73
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.73
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.73
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.73
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.73
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.72
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.72
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.72
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.71
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.71
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.71
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.71
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.71
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.7
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.7
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.7
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.69
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.69
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.69
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.69
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.69
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.69
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.69
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.69
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.69
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.69
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.68
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.68
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.67
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.67
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.67
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.67
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.66
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.66
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.66
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.66
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.65
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.65
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.65
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.65
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.65
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.65
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.65
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.65
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.65
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.64
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.64
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.64
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.64
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.62
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.62
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.62
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.61
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.61
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.61
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.6
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.6
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.6
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.59
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.58
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.58
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.58
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.56
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.56
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.56
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.55
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.55
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.54
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.54
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.53
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.52
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.5
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.5
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.5
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.5
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.49
1svv_A	359	Threonine aldolase; structural genomics, structura	99.47
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.19
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.44
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.44
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.44
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.43
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.42
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.42
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.42
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.42
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.42
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.42
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.4
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.39
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.38
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.38
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.36
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.35
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.35
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.34
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.34
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.33
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.32
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.31
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.31
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.31
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.3
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.29
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.27
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.25
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.22
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.22
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.18
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.16
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.15
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.15
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.14
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.13
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.13
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.12
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.11
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.11
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.11
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.1
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.09
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.07
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.06
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.05
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.01
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	98.73
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	98.72
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	98.61
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	98.61
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	98.59
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	98.55
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	98.53
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	98.5
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	98.43
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	98.36
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	98.34
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	98.27
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	97.97

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.96  E-value=9.9e-29  Score=217.21  Aligned_cols=211  Identities=28%  Similarity=0.576  Sum_probs=164.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||+++|+||+|+++.+++..+.++..++...++++++|+||.|+++|+|+||+++++....+++ .+.   
T Consensus       214 ~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~-~i~---  289 (427)
T 3dyd_A          214 QKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGN-EIR---  289 (427)
T ss_dssp             HHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHH-HHH---
T ss_pred             HHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEecCcchhhHH-HHH---
Confidence            3789999999999999999999999887666777777777899999999999999999999999864222211 122   


Q ss_pred             hhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..+........++++.. .++...++....+++.+.++.++++++.+.+.|++++++.. ..|++|+|+|     
T Consensus       290 -----~~l~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~p~~g~~~~-----  358 (427)
T 3dyd_A          290 -----DGLVKLSQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRP-VRPSGAMYLM-----  358 (427)
T ss_dssp             -----HHHHHHHHHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEE-ECCSBTTEEE-----
T ss_pred             -----HHHHHHHhccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCcee-cCCCeeEEEE-----
Confidence                 33332221122333333 55556565445678899999999999999999999877764 6799999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                          +.++....+...++.+++.++++++||.+.||+.|+..+++|++++.+++++++++++|.++++++.
T Consensus       359 ----~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~~~  425 (427)
T 3dyd_A          359 ----VGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVITVPEVMMLEACSRIQEFCEQHY  425 (427)
T ss_dssp             ----EEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             ----EecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEECCCHHHHHHHHHHHHHHHHHhh
Confidence                6665433322234678888888889999999999998999999999999999999999999998875

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.96  E-value=6.8e-28  Score=211.66  Aligned_cols=199  Identities=18%  Similarity=0.263  Sum_probs=152.8

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++||++||+||+|+++.|++..+.++..++.++++|+++|+||.|+ ||+|+||+++++  .+++.   +    
T Consensus       215 ~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~--~l~~~---l----  284 (425)
T 2r2n_A          215 EIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPK--PLIER---V----  284 (425)
T ss_dssp             HHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEH--HHHHH---H----
T ss_pred             HHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCH--HHHHH---H----
Confidence            7899999999999999999999998766667777776789999999999988 999999999987  34421   1    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCCccEEEEEe
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEK----TEEEFFSKITDILREAADICCDRLKE-IPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~  156 (233)
                          .........+.++..+ .++...++.    ...++++++++.++++++.+.+.|++ ++++..+..|.+|+|+|  
T Consensus       285 ----~~~~~~~~~~~~~~~q-~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~--  357 (425)
T 2r2n_A          285 ----ILHIQVSTLHPSTFNQ-LMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLW--  357 (425)
T ss_dssp             ----HHHHHTTTCSSCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEE--
T ss_pred             ----HHHHHHhcCCCCHHHH-HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEE--
Confidence                2222222333333333 444444443    23578999999999999999999988 66653236789999999  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-----CCcEEEEee-cCHHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-----KDWLRITFA-VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----~~~~Rl~~~-~~~~~l~~~~~~l~~~l~~~  229 (233)
                             ++++..    . ++.+++.+.|.++||.+.||+.|+.     .+++|++++ .+++++++++++|.+++++.
T Consensus       358 -------~~~~~~----~-~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~  424 (425)
T 2r2n_A          358 -------IKVKGI----N-DVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES  424 (425)
T ss_dssp             -------EEETTC----S-CCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             -------EEeCCC----C-CHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence                   665421    1 3556667778899999999999974     479999998 59999999999999998753

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.95  E-value=2.8e-27  Score=209.53  Aligned_cols=199  Identities=22%  Similarity=0.396  Sum_probs=153.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++||++||+||+|+++.+++..+.++..++..+++++++||||.++ ||+|+||+++++  ++++.   +    
T Consensus       241 ~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v~~~~--~l~~~---l----  310 (448)
T 3aow_A          241 YLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWMVGDP--GIIRK---M----  310 (448)
T ss_dssp             HHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEEEECH--HHHHH---H----
T ss_pred             HHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEEEeCH--HHHHH---H----
Confidence            7899999999999999999999998766667777777788999999999988 999999999986  44432   1    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhc-CC-CcccccCCCccEEEEEecC
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKE-IP-CITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~-~~-~~~~~~~~~~g~~~~~~~~  158 (233)
                          .......+++.++..+ .++..+++.. ..++++++++.++++++.+.+.|++ ++ ++. +..|.+|+|+|    
T Consensus       311 ----~~~~~~~~~~~~~~~q-~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~-~~~p~~g~~~~----  380 (448)
T 3aow_A          311 ----EIAKQSTDLCTNVFGQ-VVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVK-WTKPEGGMFIW----  380 (448)
T ss_dssp             ----HHHHHHHHSSCCHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCE-ECCCSBSSEEE----
T ss_pred             ----HHHHHHhcCCCCHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EeCCCccEEEE----
Confidence                2222223333333333 4555555443 4678999999999999999999987 66 465 36789999999    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----CCcEEEEeec-CHHHHHHHHHHHHHHHHHHhh
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFAV-EPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~Rl~~~~-~~~~l~~~~~~l~~~l~~~~~  231 (233)
                           ++++.    +. +..++..+++ ++||.+.||+.|+.    .+++|++++. +++++++++++|.+++++..+
T Consensus       381 -----v~~~~----~~-~~~~l~~~l~-~~gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l~~~~~  447 (448)
T 3aow_A          381 -----VTLPD----GI-DSKKMLERAI-KKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETIKEELK  447 (448)
T ss_dssp             -----EECST----TC-CHHHHHHHHH-HTTEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHHHHHHHHC
T ss_pred             -----EEcCC----CC-CHHHHHHHHH-HCCcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHHHh
Confidence                 66542    12 3555666655 55999999999963    5799999997 799999999999999987654

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.95  E-value=4.8e-27  Score=205.11  Aligned_cols=210  Identities=29%  Similarity=0.488  Sum_probs=157.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCC----ccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccch
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNT----HFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGV   76 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~----~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~   76 (233)
                      ++|+++|++||++||+||+|.++.+++.    .+.++..++..+++++++|+||.|+++|+|+||++++++..++++  +
T Consensus       200 ~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~--~  277 (416)
T 1bw0_A          200 EDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPS--F  277 (416)
T ss_dssp             HHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHH--H
T ss_pred             HHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHH--H
Confidence            3689999999999999999999988775    445666566556799999999999999999999999873113321  2


Q ss_pred             hhhhhhhhHHhhhhh--hhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEE
Q 047983           77 AFFHSISLNMRMDDY--LLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVM  154 (233)
Q Consensus        77 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~  154 (233)
                      .        ..+...  ...+.++..+ .++...++....+++++.++.++++++.+.+.|++++++.. ..|.+|+|+|
T Consensus       278 ~--------~~~~~~~~~~~~~~~~~~-~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~~~~~~  347 (416)
T 1bw0_A          278 L--------EGLKRVGMLVCGPCTVVQ-AALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAP-TMPRGAMYLM  347 (416)
T ss_dssp             H--------HHHHHHHHHHTCSCHHHH-HHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEE-CCCCBTTEEE
T ss_pred             H--------HHHHHHhccccCCCcHHH-HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-cCCCeeEEEE
Confidence            2        222222  1233333333 55555554334678899999999999999999998877764 6788899999


Q ss_pred             EecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHhh
Q 047983          155 YCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                               ++++....+...++.+++.++++++||.+.||+.|+..+++|++++.+++++++++++|.++++++.+
T Consensus       348 ---------~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~~~~e~l~~~l~~l~~~l~~~~~  415 (416)
T 1bw0_A          348 ---------SRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQRHAA  415 (416)
T ss_dssp             ---------EEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHHHHBC
T ss_pred             ---------EeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhhc
Confidence                     66653211111235666677777889999999999888899999988899999999999999988654

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.95  E-value=2.2e-27  Score=212.85  Aligned_cols=203  Identities=21%  Similarity=0.284  Sum_probs=152.7

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCC-ccccccccC--------CccCEEEEccCcccc-CCCCceEEEEEe---cCCC
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNT-HFVPMGVFG--------SIVPVLTLGSISKRW-IVPGWRLGWLVT---SDPN   68 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~-~~~~~~~~~--------~~~~~i~~~s~sK~~-~~~G~R~G~~~~---~~~~   68 (233)
                      +|+++|++||++||+||+|.++.|++. .+.++..+.        ...++|+++|+||.| |+||+|+||++.   ++  
T Consensus       259 ~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~--  336 (498)
T 3ihj_A          259 DVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHP--  336 (498)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCH--
T ss_pred             HHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCH--
Confidence            689999999999999999999999864 455665432        234689999999999 789999999984   33  


Q ss_pred             ccccccchhhhhhhhhHHhhhhhh--hhccCcchHHHHHHHHhhh------c---HHHHHHHHHHHHHHHHHHHHHHhhc
Q 047983           69 GILQDLGVAFFHSISLNMRMDDYL--LLSESVYTTVGAVPQILEK------T---EEEFFSKITDILREAADICCDRLKE  137 (233)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~------~---~~~~~~~~~~~~~~~~~~l~~~L~~  137 (233)
                      .++              ..+....  ..+.+...| .+++.+++.      .   ..++..++++.++++++.+.+.|++
T Consensus       337 ~l~--------------~~l~~~~~~~~~~~~~~q-~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~  401 (498)
T 3ihj_A          337 EIK--------------GQLVKLLSVRLCPPVSGQ-AAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQ  401 (498)
T ss_dssp             HHH--------------HHHHHHHHHSCCCCHHHH-HHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHH--------------HHHHHHHhccCCCCHHHH-HHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            333              2222222  233333333 566666643      1   2245677889999999999999999


Q ss_pred             CCCcccccCCCccEEEEEecCCCccccccccccc-------CCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEE
Q 047983          138 IPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLL-------EGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRIT  207 (233)
Q Consensus       138 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~  207 (233)
                      ++++.+ .+|+||+|+|         ++++.+..       .++.++..++.++|+++||.++||+.|+.   .+++|++
T Consensus       402 ~~g~~~-~~p~gg~~~~---------~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris  471 (498)
T 3ihj_A          402 VPGIHC-NPLQGAMYAF---------PRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMT  471 (498)
T ss_dssp             STTEEC-CCCCBSSEEC---------CEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEE
T ss_pred             CCCcEe-cCCCeEEEEE---------EeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEE
Confidence            888875 7899999999         66554321       13322334488899999999999999984   4699999


Q ss_pred             eecCHHHHHHHHHHHHHHHHHHhh
Q 047983          208 FAVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       208 ~~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                      ++.+++++++++++|.++++++.+
T Consensus       472 ~~~~~e~l~~~i~~L~~~~~~~~~  495 (498)
T 3ihj_A          472 ILPPVEKLKTVLQKVKDFHINFLE  495 (498)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eCCCHHHHHHHHHHHHHHHHHHHH
Confidence            988999999999999999988765

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.95  E-value=3.5e-27  Score=204.37  Aligned_cols=194  Identities=17%  Similarity=0.357  Sum_probs=145.9

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++||++||+||+|+++.+++ .+.++..++. +++|+++|+||.|+++|+|+||+++++  .+++.   +    
T Consensus       188 ~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~-~~~i~~~s~SK~~~~~G~RiG~~~~~~--~~~~~---l----  256 (385)
T 1b5p_A          188 ALARLAVEHDFYLVSDEIYEHLLYEG-EHFSPGRVAP-EHTLTVNGAAKAFAMTGWRIGYACGPK--EVIKA---M----  256 (385)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGTCT-TTEEEEEESTTTTTCGGGCCEEEECCH--HHHHH---H----
T ss_pred             HHHHHHHHcCCEEEEEccchhcccCC-CCCCHHHcCC-CCEEEEEechhhcCCcccceEEEEeCH--HHHHH---H----
Confidence            68999999999999999999999876 5556666655 889999999999999999999999976  34321   1    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhc--HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKT--EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                          .........+.+...+ .+....++..  ..+++++.++.++++++.+.+.|+++ ++.. ..|++++|+|     
T Consensus       257 ----~~~~~~~~~~~~~~~~-~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~-----  324 (385)
T 1b5p_A          257 ----ASVSRQSTTSPDTIAQ-WATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKA-VRPSGAFYVL-----  324 (385)
T ss_dssp             ----HHHHHTTTCSCCHHHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCB-CCCSBTTEEE-----
T ss_pred             ----HHHHhhccCCCCHHHH-HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCee-cCCCeeEEEE-----
Confidence                2222222223333333 3344444331  35678999999999999999999887 6654 6789999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                          +.++.  . +. +..++..+++ ++||.+.||+.|+.++++|+|++.+++++++++++|.++++
T Consensus       325 ----~~~~~--~-~~-~~~~l~~~l~-~~gv~v~~g~~f~~~~~iRis~~~~~~~i~~~l~~l~~~l~  383 (385)
T 1b5p_A          325 ----MDTSP--I-AP-DEVRAAERLL-EAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVLG  383 (385)
T ss_dssp             ----EECTT--T-CS-SHHHHHHHHH-HTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC-
T ss_pred             ----EecCC--C-CC-CHHHHHHHHH-HCCeEEecccccCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence                55531  1 12 3556666655 88999999999987889999999989999999999987764

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.95  E-value=8.5e-27  Score=209.15  Aligned_cols=203  Identities=20%  Similarity=0.284  Sum_probs=152.4

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCC-ccccccc----c---CCccCEEEEccCcccc-CCCCceEEEEEe---cCCCc
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNT-HFVPMGV----F---GSIVPVLTLGSISKRW-IVPGWRLGWLVT---SDPNG   69 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~-~~~~~~~----~---~~~~~~i~~~s~sK~~-~~~G~R~G~~~~---~~~~~   69 (233)
                      +|+++|++||++||+||+|.++.|++. .+.++..    +   ..+.++|+++|+||.| |++|+|+||+++   ++  +
T Consensus       261 ~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~--~  338 (500)
T 3tcm_A          261 DIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSA--P  338 (500)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCT--T
T ss_pred             HHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCH--H
Confidence            688899999999999999999999653 4445432    2   3345689999999998 899999999998   44  3


Q ss_pred             cccccchhhhhhhhhHHhhhhhhh--hccCcchHHHHHHHHhhh---------cHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 047983           70 ILQDLGVAFFHSISLNMRMDDYLL--LSESVYTTVGAVPQILEK---------TEEEFFSKITDILREAADICCDRLKEI  138 (233)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~l~~~L~~~  138 (233)
                      ++              ..+.....  .+.+...+ .+++.+++.         ...++..++++.++++++.+.+.|+++
T Consensus       339 ~~--------------~~l~~~~~~~~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~  403 (500)
T 3tcm_A          339 VR--------------EQIYKIASVNLCSNITGQ-ILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKL  403 (500)
T ss_dssp             HH--------------HHHHHHHHTTCCCCHHHH-HHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HH--------------HHHHHHHhcccCCCHHHH-HHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44              23322222  33333333 455555532         134677888999999999999999998


Q ss_pred             CCcccccCCCccEEEEEecCCCccccccccccc-------CCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEEe
Q 047983          139 PCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLL-------EGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRITF  208 (233)
Q Consensus       139 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~~  208 (233)
                      +++.+ .+|+||+|+|         +++..+..       .+..++..++.++|+++||.++||+.|+.   .+++|+++
T Consensus       404 ~g~~~-~~~~g~~~~~---------~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~  473 (500)
T 3tcm_A          404 EGITC-NEAEGAMYVF---------PQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTI  473 (500)
T ss_dssp             TTEEC-CCCCBTTEEC---------CEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEES
T ss_pred             CCcEE-ecCCeEEEEe---------eeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEE
Confidence            88875 7899999999         65544321       12223455677899999999999999984   46899999


Q ss_pred             ecCHHHHHHHHHHHHHHHHHHhh
Q 047983          209 AVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       209 ~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                      +.+++++++++++|.++++++.+
T Consensus       474 ~~~~e~i~~~i~~l~~~~~~~~~  496 (500)
T 3tcm_A          474 LPQEDKIPAVISRFTVFHEAFMS  496 (500)
T ss_dssp             CSCTTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Confidence            98889999999999999987754

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.94  E-value=1.5e-26  Score=204.08  Aligned_cols=205  Identities=14%  Similarity=0.130  Sum_probs=151.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccc--cchhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD--LGVAF   78 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~--~~~~~   78 (233)
                      +|+++|++||++||+||+|+++.+++..+.++..++. .++++++.|+||.|+++|+|+||+++++  ++++.  ..+. 
T Consensus       233 ~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~--~~~~~~~~~~~-  309 (449)
T 3qgu_A          233 ELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPK--ALKYANGEPVH-  309 (449)
T ss_dssp             HHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCT--TCBCTTSCBHH-
T ss_pred             HHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCH--HHHhhhhhhHH-
Confidence            6889999999999999999999998765666666654 5789999999999999999999999987  44421  0000 


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                          ............+.++..+ .+....+.....++++++++.++++++.+.+.|+++ ++.. ..|++++|+|    
T Consensus       310 ----~~~~~~~~~~~~~~~~~~~-~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~----  378 (449)
T 3qgu_A          310 ----ADWNRVMTTCFNGASNIVQ-AGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-GFSV-YGGDDAPYIW----  378 (449)
T ss_dssp             ----HHHHHHHHHSCCCCCHHHH-HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCE-EESSSSSEEE----
T ss_pred             ----HHHHHHhhcccCCCCHHHH-HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCee-eCCCCeeEEE----
Confidence                0002222222222333333 444444444345789999999999999999999987 5654 6788999999    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHHhh
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                           +.++ .    . ++.+++.++++++||.+.||+.|+.  ++++|+++..+++++++++++|.+++++..+
T Consensus       379 -----~~~~-~----~-~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~~~  442 (449)
T 3qgu_A          379 -----VGFP-G----K-PSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENILEAVRRFKEAYGKRNA  442 (449)
T ss_dssp             -----EECT-T----S-CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHC----
T ss_pred             -----EECC-C----C-CHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhcCc
Confidence                 5554 1    1 4677777888778999999999985  6899999988999999999999999877654

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.94  E-value=3.9e-26  Score=200.51  Aligned_cols=200  Identities=17%  Similarity=0.220  Sum_probs=146.8

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccC-CccCEEEEccCccccCCCCceEEEEEecCCCccc--cccchhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL--QDLGVAF   78 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~--~~~~~~~   78 (233)
                      +|+++|++||++||+||+|.++.+++. +.++..+. ..+++|++.|+||.|+++|+|+||+++++  +++  +.+.++ 
T Consensus       222 ~l~~la~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~--~~~~~~~~~~~-  297 (432)
T 3ei9_A          222 QLVEFAKKNGSIIVYDSAYAMYMSDDN-PRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPK--KLLYSDGFPVA-  297 (432)
T ss_dssp             HHHHHHHHHTCEEEEECTTGGGCCSSC-CSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCT--TCBCTTSCBHH-
T ss_pred             HHHHHHHHcCcEEEEccchHhhccCCC-CCChhhcCCCCCeEEEEecchhccCCcccceEEEEECh--HHhhcchHHHH-
Confidence            688899999999999999999988754 33444443 35789999999999999999999999988  331  000112 


Q ss_pred             hhhhhhHHhhhhhhh-hccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           79 FHSISLNMRMDDYLL-LSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                             ..+..... ...++++.. .+..+.+.....++++++++.++++++.+.+.|+++ ++.. ..|.+++|+|  
T Consensus       298 -------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~--  366 (432)
T 3ei9_A          298 -------KDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYDV-YGGKNAPYVW--  366 (432)
T ss_dssp             -------HHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCE-EECSSSSEEE--
T ss_pred             -------HHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-Ccee-cCCCcceEEE--
Confidence                   22322211 111223332 333333433445789999999999999999999887 5654 5677899999  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                             +.++  .   . ++.+++.++++++||.+.||+.|++  ++++|+|+..++++++++++||++.-..+
T Consensus       367 -------~~~~--~---~-~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~rl~~~~~~~  428 (432)
T 3ei9_A          367 -------VHFP--N---Q-SSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRFKQLYKHH  428 (432)
T ss_dssp             -------EECT--T---S-CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHTTS
T ss_pred             -------EECC--C---C-CHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecCCHHHHHHHHHHHHHHhhhc
Confidence                   5554  1   1 4677888888888999999999986  78999999889999999999998765433

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.94  E-value=8.4e-26  Score=195.39  Aligned_cols=199  Identities=18%  Similarity=0.447  Sum_probs=149.4

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCC--ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS--IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|+++|++||+++|+||+|+++.+++..+.++..++.  .++++++.|+||.|+++|+|+||+++++  ++++.   +  
T Consensus       187 ~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~--~~~~~---l--  259 (388)
T 1j32_A          187 AIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPV--PLVKA---A--  259 (388)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCH--HHHHH---H--
T ss_pred             HHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEeCH--HHHHH---H--
Confidence            6899999999999999999999987765556665543  5689999999999999999999999987  34321   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                            .......+.+.++..+ .+....++ ...+++++.++.++++++.+.+.|++++++.. ..|.+++|+|     
T Consensus       260 ------~~~~~~~~~~~~~~~~-~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~~~~~~-----  325 (388)
T 1j32_A          260 ------TKIQGHSTSNVCTFAQ-YGAIAAYE-NSQDCVQEMLAAFAERRRYMLDALNAMPGLEC-PKPDGAFYMF-----  325 (388)
T ss_dssp             ------HHHHHTTTCSCCHHHH-HHHHHHHH-SCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBC-CCCCBTTEEC-----
T ss_pred             ------HHHHhhcccCCCHHHH-HHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcc-cCCCeeEEEE-----
Confidence                  2222222233322222 33333343 23567889999999999999999998877764 6788999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                          +.++.  . +. +..++..++++++||.+.||+.|+..+++|++++.+++++++++++|.+++++.
T Consensus       326 ----~~~~~--~-~~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l~~~  387 (388)
T 1j32_A          326 ----PSIAK--T-GR-SSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             ----CBCGG--G-TC-CHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             ----EecCC--C-CC-CHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence                54432  1 11 355666666666899999999998889999999989999999999999998764

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.94  E-value=8e-26  Score=196.38  Aligned_cols=199  Identities=18%  Similarity=0.262  Sum_probs=152.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccC--CccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG--SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|+++|++||+++|+||+|+.+.+++..+.++..++  ..++++++.|+||.|+++|+|+||+++++  .+++.   +  
T Consensus       203 ~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~--~~~~~---l--  275 (407)
T 3nra_A          203 QIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSR--AIIAR---M--  275 (407)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECH--HHHHH---H--
T ss_pred             HHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCH--HHHHH---H--
Confidence            689999999999999999999999876666666664  46789999999999999999999999976  34421   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                            .........+  +++.. .++...++ ...+++++.++.++++++.+.+.|++++++.. ..|.+++|+|    
T Consensus       276 ------~~~~~~~~~~--~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~----  341 (407)
T 3nra_A          276 ------EKLQAIVSLR--AAGYSQAVLRGWFD-EAPGWMEDRIARHQAIRDELLHVLRGCEGVFA-RTPQAGSYLF----  341 (407)
T ss_dssp             ------HHHHHHHTSS--SCHHHHGGGGGTTC-CCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBC-CCCSBSSEEC----
T ss_pred             ------HHHHhhhccC--CChHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhcCCCcee-ccCCeeEEEE----
Confidence                  2222222232  33333 44444443 23457788889999999999999998877764 6788999999    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                           +.++..   +. +..++...+++++||.+.||+.|++  .+++|++++.+++++++++++|.++++++.
T Consensus       342 -----~~~~~~---~~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~~~~~~  406 (407)
T 3nra_A          342 -----PRLPKL---AV-APAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERYR  406 (407)
T ss_dssp             -----CBCCCB---SS-CHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCSCHHHHHHHHHHHHHHHHHHB
T ss_pred             -----EeCCCC---CC-CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHhh
Confidence                 555421   11 3556666666778999999999984  689999999999999999999999998764

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.94  E-value=2.3e-25  Score=192.96  Aligned_cols=198  Identities=20%  Similarity=0.370  Sum_probs=147.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++||+++|+||+|.++.+++.. .++..  ..+++++++|+||.++++|+|+||+++++  .+++.   +    
T Consensus       185 ~l~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~--~~~~~i~~~s~sK~~g~~G~r~G~~~~~~--~~~~~---~----  252 (391)
T 3h14_A          185 ALIEAAQAQGASFISDEIYHGIEYEAKA-VTALE--LTDECYVINSFSKYFSMTGWRVGWMVVPE--DQVRV---V----  252 (391)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTCBSSSCC-CCGGG--TCSSSEEEEESSSTTCCTTSCCEEEECCG--GGHHH---H----
T ss_pred             HHHHHHHHcCCEEEEECcchhcccCCCC-cChhh--cCCCEEEEEechhccCCccceeEEEEeCH--HHHHH---H----
Confidence            6899999999999999999999988753 23322  25788999999999999999999999987  34421   1    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCCc
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDK  161 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (233)
                          .........+.++..+ .+..+.+.  ..+++++.++.++++++.+.+.|++++... +..|++++|+|       
T Consensus       253 ----~~~~~~~~~~~~~~~~-~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~-------  317 (391)
T 3h14_A          253 ----ERIAQNMFICAPHASQ-VAALAALD--CDAELQANLDVYKANRKLMLERLPKAGFTR-IAPPDGAFYVY-------  317 (391)
T ss_dssp             ----HHHHHHTTCCCCHHHH-HHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-BCCCCBTTEEE-------
T ss_pred             ----HHHHhhhccCCCHHHH-HHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHcCCCc-ccCCCeeEEEE-------
Confidence                2222222233332333 33333343  567889999999999999999998874333 36788999999       


Q ss_pred             ccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEEeecCHHHHHHHHHHHHHHHHHHhhc
Q 047983          162 CLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRITFAVEPSAFEIGLGRMKAFYYRHAKK  232 (233)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~~  232 (233)
                        +.++..   + .+..++..++++++||.+.||+.|+.   .+++|++++.+++++++++++|.++++++.+.
T Consensus       318 --~~~~~~---~-~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~~~~~~~~  385 (391)
T 3h14_A          318 --ADVSDL---T-DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFMQARGEG  385 (391)
T ss_dssp             --EECTTT---C-SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHHHHHC---
T ss_pred             --EecCcc---C-CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhccc
Confidence              555421   1 13667777777777999999999986   58999999999999999999999999887654

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.93  E-value=4.4e-26  Score=196.15  Aligned_cols=198  Identities=15%  Similarity=0.204  Sum_probs=150.2

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCC-CccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGN-THFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||+++|+||+|.++.+++ ..+.++..++..++++++.|+||.+|++|+|+||++++++ .+++.   +   
T Consensus       174 ~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~~~~~---~---  246 (377)
T 3fdb_A          174 ELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNP-SDAEH---W---  246 (377)
T ss_dssp             HHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSH-HHHHH---H---
T ss_pred             HHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCCH-HHHHH---H---
Confidence            67888999999999999999999987 5555666555568899999999999999999999988542 23321   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE-IPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           .......+.+.++..+ .+....++. .++++++.++.++++++.+.+.|++ ++++.. ..|++++++|     
T Consensus       247 -----~~~~~~~~~~~~~~~~-~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~-----  313 (377)
T 3fdb_A          247 -----QQLSPVIKDGASTLGL-IAAEAAYRY-GTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKI-TPMQATYLMW-----  313 (377)
T ss_dssp             -----HHSCHHHHCCCCHHHH-HHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEE-CCCSBCSEEE-----
T ss_pred             -----HHHHHhhcCCCCHHHH-HHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCceE-ecCCeeEEEE-----
Confidence                 2222222233333333 333333432 2678899999999999999999988 788775 7899999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~  228 (233)
                          +.++...   .  +.+++..+++++||.+.||+.|+.  .+++|++++.+++++++++++|.+++++
T Consensus       314 ----~~~~~~~---~--~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~~~e~i~~~l~~l~~~l~~  375 (377)
T 3fdb_A          314 ----IDFRDTT---I--EGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSREVLEEAIDRMAKAVSH  375 (377)
T ss_dssp             ----EECTTSC---C--CSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHTT
T ss_pred             ----EECcccC---C--CHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence                5554321   1  345667777778999999999986  6899999999999999999999998864

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.93  E-value=3.4e-26  Score=199.94  Aligned_cols=203  Identities=17%  Similarity=0.377  Sum_probs=151.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++|+||+|.++.+++..+.++..+.. .++++++.|+||.|+++|+|+||+++++  .+++.   +  
T Consensus       197 ~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~--~~~~~---~--  269 (422)
T 3fvs_A          197 ELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPD--HIMKH---L--  269 (422)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCH--HHHHH---H--
T ss_pred             HHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEEEeCH--HHHHH---H--
Confidence            36899999999999999999999998876666666653 5789999999999999999999999987  34421   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhh------cHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEE
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEK------TEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFV  153 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~  153 (233)
                            ........++.++..+ .++...+..      ...+++++.++.++++++.+.+.|+++ ++.. ..|++|+|+
T Consensus       270 ------~~~~~~~~~~~~~~~~-~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~  340 (422)
T 3fvs_A          270 ------RTVHQNSVFHCPTQSQ-AAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKP-IIPQGSYFL  340 (422)
T ss_dssp             ------HHHHHTTTCCCCHHHH-HHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCEE-EBCSBSSEE
T ss_pred             ------HHHHhhccCCCCcHHH-HHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCee-cCCCeeeEE
Confidence                  2222222333333333 444444432      235688999999999999999999988 5653 678999999


Q ss_pred             EEecCCCcccccccccc--cC---CC---CChHHHHHHHHhccCEEEECCcccCC-------CCcEEEEeecCHHHHHHH
Q 047983          154 MYCGSEDKCLLKLNYSL--LE---GI---NSDTEFALKLAKEESIIVLPGITVGL-------KDWLRITFAVEPSAFEIG  218 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~--~~---~~---~~~~~~~~~ll~~~gi~v~pg~~f~~-------~~~~Rl~~~~~~~~l~~~  218 (233)
                      |         +.++...  ..   ..   ..+.+++.++++++||.+.||+.|+.       .+++|++++.++++++++
T Consensus       341 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~  411 (422)
T 3fvs_A          341 I---------TDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAM  411 (422)
T ss_dssp             E---------EECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHHH
T ss_pred             E---------EechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecCCHHHHHHH
Confidence            9         4432110  00   00   00457788888889999999999963       689999999999999999


Q ss_pred             HHHHHHHHHH
Q 047983          219 LGRMKAFYYR  228 (233)
Q Consensus       219 ~~~l~~~l~~  228 (233)
                      +++|.+++++
T Consensus       412 l~~l~~~l~~  421 (422)
T 3fvs_A          412 DEKLRKWKVE  421 (422)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999998764

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.93  E-value=4e-25  Score=191.77  Aligned_cols=201  Identities=15%  Similarity=0.170  Sum_probs=150.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC--ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS--IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++|++||++||+||+|+++.+++..+.++..++.  .++++++.|+||.++++|+|+||++++++ +++       
T Consensus       187 ~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~-~~~-------  258 (399)
T 1c7n_A          187 QKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNP-DIR-------  258 (399)
T ss_dssp             HHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCH-HHH-------
T ss_pred             HHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCH-HHH-------
Confidence            36899999999999999999999987765556665543  57899999999999999999999999752 233       


Q ss_pred             hhhhhhHHhhhhhhh-hcc-CcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCCccEEEE
Q 047983           79 FHSISLNMRMDDYLL-LSE-SVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKE-IPCITCPKKPEGSMFVM  154 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~-~~~-~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~  154 (233)
                             ..+..... .+. ++++.. .+..+.++.. .+++++.++.++++++.+.+.|++ ++++.. ..|.+++++|
T Consensus       259 -------~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~  329 (399)
T 1c7n_A          259 -------ERFTKSRDATSGMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKA-PLIEGTYLQW  329 (399)
T ss_dssp             -------HHHHHHHHHTTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBC-CCCSBSSEEE
T ss_pred             -------HHHHHHHhhcccCCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeE-ecCCceEEEE
Confidence                   22222211 111 223333 3343444332 578899999999999999999988 877764 6788999999


Q ss_pred             EecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHHhh
Q 047983          155 YCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                               ++++..   +. +..++...+++++||.+.||+.|+.  .+++|++++..++++++++++|.+++++..+
T Consensus       330 ---------~~~~~~---~~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~~~  395 (399)
T 1c7n_A          330 ---------IDFRAL---KM-DHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLKN  395 (399)
T ss_dssp             ---------EECGGG---CC-CHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC-
T ss_pred             ---------EEcccC---CC-CHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccCHHHHHHHHHHHHHHHHHHHh
Confidence                     555421   11 3455665555688999999999973  6899999999889999999999999987753

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.93  E-value=2.5e-25  Score=194.25  Aligned_cols=201  Identities=20%  Similarity=0.326  Sum_probs=148.8

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||++||+||+|.++.+++..+.++..++. .++++++.|+||.++++|+|+||+++++  ++++.   +   
T Consensus       196 ~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--~~~~~---l---  267 (412)
T 2x5d_A          196 RVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNP--ELVSA---L---  267 (412)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEECH--HHHHH---H---
T ss_pred             HHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEcCH--HHHHH---H---
Confidence            6899999999999999999999987655556655543 5789999999999999999999999976  34421   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                           .......+.+.++..+ .+....++. .++++++.++.++++++.+.+.|+++ ++.. ..|.+|+|+|      
T Consensus       268 -----~~~~~~~~~~~~~~~~-~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~g~~~~------  332 (412)
T 2x5d_A          268 -----ARIKSYHDYGTFTPLQ-VAAIAALEG-DQQCVRDIARQYQQRRDVLVKGLREA-GWMV-ENPKASMYVW------  332 (412)
T ss_dssp             -----HHHHHHHCCCCCHHHH-HHHHHHHHS-CSHHHHHHHHHHHHHHHHHHHHHHHH-TCCC-CCCSBSSEEE------
T ss_pred             -----HHHHhhhccCCCHHHH-HHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHC-CCEe-cCCCeeeEEE------
Confidence                 2222222233333333 444444433 24678999999999999999999887 5554 6788999999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                         ++++... .. .+..++..++++++||.+.||+.|+.  .+++|++++.+++++++++++|.+++++..
T Consensus       333 ---~~~~~~~-~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~~  399 (412)
T 2x5d_A          333 ---AKIPEPY-AH-LGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAMFRADG  399 (412)
T ss_dssp             ---EECCTTT-GG-GCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             ---EEcCCcc-CC-CCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhcC
Confidence               5553110 00 02556666766778999999999974  689999999999999999999999998754

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.5e-26  Score=200.91  Aligned_cols=198  Identities=21%  Similarity=0.395  Sum_probs=145.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcccccccc--CCccCEEEEccCccccCCCCceEEEEEe-cCCCccccccchh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVF--GSIVPVLTLGSISKRWIVPGWRLGWLVT-SDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~~~~G~R~G~~~~-~~~~~~~~~~~~~   77 (233)
                      ++|+++|++||++||+||+|.++.+++ .+.++..+  +..++++++.|+||.|+++|+|+||+++ ++  ++++.   +
T Consensus       224 ~~i~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~--~l~~~---l  297 (447)
T 3b46_A          224 TTLGNICVKHNVVIISDEVYEHLYFTD-SFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNA--ELLSY---A  297 (447)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCH--HHHHH---H
T ss_pred             HHHHHHHHHcCcEEEEeccchhcccCC-CCcCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCH--HHHHH---H
Confidence            368999999999999999999999887 43455544  2357899999999999999999999999 65  34421   1


Q ss_pred             hhhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           78 FFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                              ........++.++..+ .++...++.. .+++++++++.++++++.+.+.|+++ ++.. ..|++|+|+|  
T Consensus       298 --------~~~~~~~~~~~~~~~~-~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~g~~~~--  364 (447)
T 3b46_A          298 --------AKAHTRICFASPSPLQ-EACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL-GLPY-TAPEGTYFVL--  364 (447)
T ss_dssp             --------HHHHHHHTSSCCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-TCCE-ECCSBSSEEE--
T ss_pred             --------HHHHhhccCCCChHHH-HHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCee-cCCCeeEEEE--
Confidence                    2222333344433333 4444444433 25688999999999999999999887 5553 6789999999  


Q ss_pred             cCCCcccccccccccC-C---------CCChHHHHHHHHhccCEEEECCcccCC-------CCcEEEEeecCHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLE-G---------INSDTEFALKLAKEESIIVLPGITVGL-------KDWLRITFAVEPSAFEIGL  219 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~ll~~~gi~v~pg~~f~~-------~~~~Rl~~~~~~~~l~~~~  219 (233)
                             ++++....+ +         ..++.+++.++++++||.+.||+.|+.       .+++|++++.+++++++++
T Consensus       365 -------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~~~e~l~~~~  437 (447)
T 3b46_A          365 -------VDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAYLENAV  437 (447)
T ss_dssp             -------EECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCSCHHHHHHHH
T ss_pred             -------EecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeCCHHHHHHHH
Confidence                   544321000 0         113456777777789999999999964       5899999999999999999


Q ss_pred             HHHHH
Q 047983          220 GRMKA  224 (233)
Q Consensus       220 ~~l~~  224 (233)
                      ++|.+
T Consensus       438 ~~l~~  442 (447)
T 3b46_A          438 ERLKL  442 (447)
T ss_dssp             HHGGG
T ss_pred             HHHHH
Confidence            99976

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.93  E-value=4.2e-25  Score=191.06  Aligned_cols=201  Identities=20%  Similarity=0.432  Sum_probs=148.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++|+||+|+++.+++..+.++..++. .++++++.|+||.++++|+|+||+++++  .+++.   +  
T Consensus       183 ~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--~~~~~---l--  255 (389)
T 1gd9_A          183 EEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPS--WIIER---M--  255 (389)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCH--HHHHH---H--
T ss_pred             HHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEECH--HHHHH---H--
Confidence            36899999999999999999999987654445555543 5789999999999999999999999986  34421   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                            .........+.++..+ .+....++.. .++++++.++.++++++.+.+.|+++ ++.. ..|++|+|+|    
T Consensus       256 ------~~~~~~~~~~~~~~~~-~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~----  322 (389)
T 1gd9_A          256 ------VKFQMYNATCPVTFIQ-YAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPT-VKPKGAFYIF----  322 (389)
T ss_dssp             ------HHHHTTTTCSCCHHHH-HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCC-CCCCBTTEEC----
T ss_pred             ------HHHHhhhccCCCHHHH-HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc-CCee-cCCCeeeEEE----
Confidence                  1222222233333333 4444444432 22388999999999999999999887 5654 6788999999    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                           ++++..   +. +..++..++++++||.+.||+.|+.  .+++|++++.+++++++++++|.+++++.+
T Consensus       323 -----~~~~~~---~~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~~~~~~  387 (389)
T 1gd9_A          323 -----PRIRDT---GL-TSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKERK  387 (389)
T ss_dssp             -----CBCGGG---TC-CHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             -----EeccCC---CC-CHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhcc
Confidence                 555320   11 3555666655588999999999974  689999999999999999999999987654

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.93  E-value=2.1e-25  Score=195.71  Aligned_cols=200  Identities=20%  Similarity=0.344  Sum_probs=149.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++||++||+||+|+++.+++..+.++..++..++++++.|+||.|+ +|+|+||+++++  ++++.   +    
T Consensus       212 ~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~--~~~~~---l----  281 (425)
T 1vp4_A          212 ALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMVAGSK--EFIRK---I----  281 (425)
T ss_dssp             HHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEEECCH--HHHHH---H----
T ss_pred             HHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccceEEEeeCH--HHHHH---H----
Confidence            6899999999999999999999987765556666666678999999999999 999999999986  44421   1    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhc-CC---CcccccCCCccEEEEEe
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKE-IP---CITCPKKPEGSMFVMYC  156 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~-~~---~~~~~~~~~~g~~~~~~  156 (233)
                          .......+++.++..+ .++...++.. .++++++.++.++++++.+.+.|++ ++   ++.. ..|.+|+|+|  
T Consensus       282 ----~~~~~~~~~~~~~~~~-~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~-~~~~~g~~~~--  353 (425)
T 1vp4_A          282 ----VQAKQSADLCSPAITH-RLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKW-VKSEGGLFIW--  353 (425)
T ss_dssp             ----HHHHHHHHSSCCHHHH-HHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEE-CCCSBSSEEE--
T ss_pred             ----HHHhhhhcCCCCHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEE-ecCCccEEEE--
Confidence                2222222333333333 4444555443 4678899999999999999999987 45   4553 5688999999  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----CCcEEEEeec-CHHHHHHHHHHHHHHHHHHhh
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFAV-EPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~Rl~~~~-~~~~l~~~~~~l~~~l~~~~~  231 (233)
                             ++++.    +. +..++...++ ++||.+.||+.|+.    .+++|++++. +++++++++++|.+++++..+
T Consensus       354 -------~~~~~----~~-~~~~l~~~l~-~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~~~l~~~~~  420 (425)
T 1vp4_A          354 -------LTLPE----GF-DTWEMFEYAK-RKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGK  420 (425)
T ss_dssp             -------EECCT----TC-CTTTTHHHHH-HHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------EEcCC----CC-CHHHHHHHHH-HCCCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHh
Confidence                   55542    11 2445555555 45999999999963    5899999997 799999999999999988765


Q ss_pred             c
Q 047983          232 K  232 (233)
Q Consensus       232 ~  232 (233)
                      +
T Consensus       421 ~  421 (425)
T 1vp4_A          421 E  421 (425)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.93  E-value=2.8e-25  Score=191.83  Aligned_cols=200  Identities=18%  Similarity=0.238  Sum_probs=151.9

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCC--ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS--IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|+++|++||+++|+||+|+++.+++..+.++..+..  .++++++.|+||.++++|+|+||++++++ ++.+.   +  
T Consensus       184 ~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~-~~~~~---~--  257 (391)
T 3dzz_A          184 RIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNP-DLRAR---A--  257 (391)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSH-HHHHH---H--
T ss_pred             HHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCH-HHHHH---H--
Confidence            6899999999999999999999988766666666653  57899999999999999999999999842 33321   1  


Q ss_pred             hhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCCccEEEEEec
Q 047983           80 HSISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE-IPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~  157 (233)
                            ........ .+.++..+.++.+.+ .. ..+++++.++.++++++.+.+.|++ ++++.. ..|.+++++|   
T Consensus       258 ------~~~~~~~~~~~~~~~~~~a~~~~l-~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~---  325 (391)
T 3dzz_A          258 ------EESFFLAGIGEPNLLAIPAAIAAY-EE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKV-LDSNASYLAW---  325 (391)
T ss_dssp             ------HHHHHHHTCSSCCTTHHHHHHHHH-HH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEE-CCCCBSSEEE---
T ss_pred             ------HHHHHhhccCCCCHHHHHHHHHHH-hc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEE-eccCceEEEE---
Confidence                  22221112 233333332333343 32 4677899999999999999999998 888875 7899999999   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                            +.++..   +. +..++..++++++||.+.||+.|+.  .+++|++++.+++++++++++|.++++++
T Consensus       326 ------~~~~~~---~~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~~~  389 (391)
T 3dzz_A          326 ------VDISAL---GM-NAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKELVIDGMQRLKQGVLNL  389 (391)
T ss_dssp             ------EECGGG---CS-CHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCSCHHHHHHHHHHHHHHHHTC
T ss_pred             ------Eehhhc---CC-CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence                  555421   11 3556666665688999999999986  48999999999999999999999998764

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.93  E-value=1.2e-25  Score=195.71  Aligned_cols=196  Identities=19%  Similarity=0.346  Sum_probs=147.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccC-CccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||+++|+||+|.++.+++..+.++..+. ..++++++.|+||.|+++|+|+||+++++  ++++.   +   
T Consensus       191 ~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~--~~~~~---~---  262 (410)
T 3e2y_A          191 VIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPA--HLIKH---L---  262 (410)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCH--HHHHH---H---
T ss_pred             HHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEECH--HHHHH---H---
Confidence            689999999999999999999999886666666554 35789999999999999999999999987  34421   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhh------cHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEE
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEK------TEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVM  154 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~  154 (233)
                           ........++.++..+ .++...++.      ...+++++.++.++++++.+.+.|+++ ++.. ..|++|+|+|
T Consensus       263 -----~~~~~~~~~~~~~~~~-~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~  334 (410)
T 3e2y_A          263 -----QTVQQNSFYTCATPLQ-AALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLKP-IVPDGGYFII  334 (410)
T ss_dssp             -----HHHHHTTTCCCCHHHH-HHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEE-EBCSBSSEEE
T ss_pred             -----HHHHHhhccCCChHHH-HHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCee-cCCCccEEEE
Confidence                 2222222333333333 444444432      235688999999999999999999988 6654 6789999999


Q ss_pred             EecCCCcccccccccccC-CC-------CChHHHHHHHHhccCEEEECCcccCC-------CCcEEEEeecCHHHHHHHH
Q 047983          155 YCGSEDKCLLKLNYSLLE-GI-------NSDTEFALKLAKEESIIVLPGITVGL-------KDWLRITFAVEPSAFEIGL  219 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~ll~~~gi~v~pg~~f~~-------~~~~Rl~~~~~~~~l~~~~  219 (233)
                               +.++  ... +.       .++.+++.++++++||.+.||+.|+.       .+++|++++.+++++++++
T Consensus       335 ---------~~~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~l~~~l  403 (410)
T 3e2y_A          335 ---------ADVS--SLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAE  403 (410)
T ss_dssp             ---------EECG--GGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHHHHHHHH
T ss_pred             ---------EEch--hhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcCCHHHHHHHH
Confidence                     4432  211 11       11347778888899999999999963       5899999999999999999


Q ss_pred             HHHHH
Q 047983          220 GRMKA  224 (233)
Q Consensus       220 ~~l~~  224 (233)
                      ++|.+
T Consensus       404 ~~l~~  408 (410)
T 3e2y_A          404 EIFRA  408 (410)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            99975

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.93  E-value=5.9e-25  Score=193.28  Aligned_cols=202  Identities=19%  Similarity=0.308  Sum_probs=148.9

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCC----------ccCEEEEccCccccCCCCceEEEEEecCCCccc
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS----------IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL   71 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~----------~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~   71 (233)
                      +|+++|++||++||+||+|.++.+++..+.++..+..          .++++++.|+||.|+++|+|+||++++++ .+ 
T Consensus       215 ~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~-~~-  292 (435)
T 3piu_A          215 LLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDD-MV-  292 (435)
T ss_dssp             HHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCH-HH-
T ss_pred             HHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCH-HH-
Confidence            6889999999999999999999988766555544432          57899999999999999999999999752 12 


Q ss_pred             cccchhhhhhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcH--HHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC
Q 047983           72 QDLGVAFFHSISLNMRMDDYLL-LSESVYTTVGAVPQILEKTE--EEFFSKITDILREAADICCDRLKEIPCITCPKKPE  148 (233)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  148 (233)
                           .        ..+..... .+.++..+ .+++.++....  ++++++.++.++++++.+.+.|+++ ++.. ..++
T Consensus       293 -----~--------~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~  356 (435)
T 3piu_A          293 -----V--------AAATKMSSFGLVSSQTQ-HLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISC-LNGN  356 (435)
T ss_dssp             -----H--------HHHHHHGGGSCCCHHHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEE-CCCC
T ss_pred             -----H--------HHHHHHhhcCCCCHHHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcc-cCCC
Confidence                 2        22222222 22222333 55555554432  4578889999999999999999987 5654 6788


Q ss_pred             ccEEEEEecCCCcccccccccccCC-CCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeec-CHHHHHHHHHHHHH
Q 047983          149 GSMFVMYCGSEDKCLLKLNYSLLEG-INSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAV-EPSAFEIGLGRMKA  224 (233)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~-~~~~l~~~~~~l~~  224 (233)
                      +|+|+|         +.++...... ..+..++..++++++||.+.||+.|+.  .+++|++++. +++++++++++|.+
T Consensus       357 ~g~~~~---------~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~e~i~~~l~~l~~  427 (435)
T 3piu_A          357 AGLFCW---------VDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKA  427 (435)
T ss_dssp             SSSEEE---------EECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHH
T ss_pred             eeEEEE---------EEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCCCHHHHHHHHHHHHH
Confidence            899999         5543211000 001345666677777999999999975  6899999997 99999999999999


Q ss_pred             HHHHHh
Q 047983          225 FYYRHA  230 (233)
Q Consensus       225 ~l~~~~  230 (233)
                      ++++..
T Consensus       428 ~l~~~~  433 (435)
T 3piu_A          428 FVGEYY  433 (435)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            998764

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.93  E-value=2e-25  Score=194.66  Aligned_cols=196  Identities=18%  Similarity=0.267  Sum_probs=147.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccC-CccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||++||+||+|+++.+++ .+.++..+. ..++++++.|+||.++++|+|+||+++++  ++++.   +   
T Consensus       205 ~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~--~~~~~---l---  275 (404)
T 2o1b_A          205 EAIAKFKGTDTKIVHDFAYGAFGFDA-KNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGNK--DMIQA---L---  275 (404)
T ss_dssp             HHHHHHTTSSCEEEEECTTTTCBSSS-CCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEECH--HHHHH---H---
T ss_pred             HHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCCEEEEEecchhccCchhheEeEecCH--HHHHH---H---
Confidence            68999999999999999999998876 334454443 34678999999999999999999999876  34421   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                           .........+.++..+ .++...++.. ++++++.++.++++++.+.+.|+++ ++.. ..|++|+|+|      
T Consensus       276 -----~~~~~~~~~~~~~~~~-~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~g~~~~------  340 (404)
T 2o1b_A          276 -----KKYQTHTNAGMFGALQ-DAAIYALNHY-DDFLEEQSNVFKTRRDRFEAMLAKA-DLPF-VHAKGGIYVW------  340 (404)
T ss_dssp             -----HHHHHHHCCCCCHHHH-HHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHT-TCCE-ECCCBSSEEE------
T ss_pred             -----HHHHhhccCCCCHHHH-HHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhc-CCee-cCCCcceEEE------
Confidence                 2222222233333333 4444444333 6789999999999999999999887 5553 6788999999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                         ++++.    +. ++.+++.++++++||.+.||+.|+.  .+++|++++.+++++++++++|.++++++
T Consensus       341 ---~~~~~----~~-~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l~~~l~~~  403 (404)
T 2o1b_A          341 ---LETPP----GY-DSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAYLY  403 (404)
T ss_dssp             ---EECCT----TC-CHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHHGGGGGG
T ss_pred             ---EeCCC----CC-CHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Confidence               55542    12 3566677777778999999999975  68999999998889999999999887654

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.93  E-value=1.8e-25  Score=192.49  Aligned_cols=196  Identities=22%  Similarity=0.408  Sum_probs=148.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++||++||+||+|.++.+++  ..++  .+..++++++.|+||.++++|+|+||+++++  ++++.   +    
T Consensus       178 ~i~~la~~~~~~li~De~~~~~~~~~--~~~~--~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~--~l~~~---~----  244 (375)
T 3op7_A          178 ELVEIASEVGAYILSDEVYRSFSELD--VPSI--IEVYDKGIAVNSLSKTYSLPGIRIGWVAANH--QVTDI---L----  244 (375)
T ss_dssp             HHHHHHHTTTCEEEEECCSCCCSSSC--CCCH--HHHCTTEEEEEESSSSSSCGGGCCEEEECCH--HHHHH---H----
T ss_pred             HHHHHHHHcCCEEEEEcccccccccC--CCch--hhhcCCEEEEeEChhhcCCcccceEEEEeCH--HHHHH---H----
Confidence            68999999999999999999988762  2222  2335778999999999999999999999965  34421   1    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCCc
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDK  161 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (233)
                          .........+.++..+..+.. .++ ..++++++.++.++++++.+.+.|++.+++.. ..|.++++.|       
T Consensus       245 ----~~~~~~~~~~~~~~~~~~~~~-~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~-------  310 (375)
T 3op7_A          245 ----RDYRDYTMICAGVFDDLVAQL-ALA-HYQEILERNRHILEENLAILDQWIEEEPLVSY-IRPAVVSTSF-------  310 (375)
T ss_dssp             ----TTTGGGTTSCCCHHHHHHHHH-HHH-THHHHHHHHHHHHHHHHHHHHHHHHHCTTEEE-CCCSSSSCEE-------
T ss_pred             ----HHHHhhhccCCCcHHHHHHHH-HHh-ccHHHHHHHHHHHHHHHHHHHHHHhhCCCceE-ecCCCeEEEe-------
Confidence                222222223333333323333 332 45678899999999999999999988777764 6788999888       


Q ss_pred             ccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHhh
Q 047983          162 CLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                        +.++.+.     +..+++.++++++||.+.||+.|+..+++|++++.+.+++++++++|.+++++..+
T Consensus       311 --~~~~~~~-----~~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~~~~~  373 (375)
T 3op7_A          311 --VKIAVDM-----PMEDFCLQLLQEHGVLLVPGNRFERDGYVRLGFACEQETLIKGLEKLSQFLRRFDK  373 (375)
T ss_dssp             --EEECCSS-----CHHHHHHHHHHHHCEECEEGGGGTCTTEEEECCCSCHHHHHHHHHHHHHHHGGGC-
T ss_pred             --EEcCCCC-----CHHHHHHHHHHhCCEEEeChhhhCCCCeEEEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence              6565322     46777788888999999999999988999999999889999999999999987654

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.93  E-value=3.6e-25  Score=191.72  Aligned_cols=191  Identities=22%  Similarity=0.338  Sum_probs=142.7

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccc----cC-CccCEEEEccCccccCCCCceEEEEEecCCCccccccch
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGV----FG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGV   76 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~----~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~   76 (233)
                      +|+++|++||++||+||+|.++.+++..+.+...    +. ..++++++.|+||.|+++|+|+||+++++  ++++.   
T Consensus       192 ~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--~~~~~---  266 (396)
T 3jtx_A          192 EVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDA--ELLKN---  266 (396)
T ss_dssp             HHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECH--HHHHH---
T ss_pred             HHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCH--HHHHH---
Confidence            5899999999999999999999988743333221    11 35789999999999999999999999876  34421   


Q ss_pred             hhhhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           77 AFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                      +        .......+.+.++..+ .+....++.  .+++.+.++.++++++.+.+.|+++  +. +..|.+|+|+|  
T Consensus       267 ~--------~~~~~~~~~~~~~~~~-~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~--~~-~~~~~~~~~~~--  330 (396)
T 3jtx_A          267 F--------LLYRTYHGSAMSIPVQ-RASIAAWDD--EQHVIDNRRLYQEKFERVIPILQQV--FD-VKLPDASFYIW--  330 (396)
T ss_dssp             H--------HHHHHHHTCCCCHHHH-HHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHTTT--SC-CCCCSSSSEEE--
T ss_pred             H--------HHHHhhcccCCCHHHH-HHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhc--CC-ccCCCeeEEEE--
Confidence            1        2222222233333333 444444432  5688999999999999999999885  22 35788999999  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--------CCcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--------KDWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--------~~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                             +.++.      .++.+++.++++++||.+.||+.|+.        .+++|++++.+++++++++++|.+++
T Consensus       331 -------~~~~~------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          331 -------LKVPD------GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLY  395 (396)
T ss_dssp             -------EECTT------SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred             -------EECCC------CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence                   55542      13677777777888999999999974        48999999999999999999998764

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.93  E-value=1e-24  Score=189.39  Aligned_cols=198  Identities=23%  Similarity=0.363  Sum_probs=147.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCc---cCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSI---VPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~---~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      +|+++|++||++||+||+|+++.+++..+.++..++.+   ++++++.|+||.++ +|+|+||+++++  ++++.   + 
T Consensus       187 ~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~--~~~~~---l-  259 (397)
T 2zyj_A          187 RLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAHP--EALQK---L-  259 (397)
T ss_dssp             HHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECCH--HHHHH---H-
T ss_pred             HHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-ccceeEEEecCH--HHHHH---H-
Confidence            68999999999999999999999877555566666555   78999999999998 999999999986  44421   1 


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc-CC-CcccccCCCccEEEEEe
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE-IP-CITCPKKPEGSMFVMYC  156 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~-~~~~~~~~~~g~~~~~~  156 (233)
                             ........++.++..+ .+....++....+++++.++.++++++.+.+.|++ ++ ++.. ..|.+|+|+|  
T Consensus       260 -------~~~~~~~~~~~~~~~~-~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~-~~~~~g~~~~--  328 (397)
T 2zyj_A          260 -------VQAKQGADLHTPMLNQ-MLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRY-TRPKGGMFVW--  328 (397)
T ss_dssp             -------HHHHHHHHSSCCHHHH-HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEE-CCCSBSSEEE--
T ss_pred             -------HHHHHhhcCCCCHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEE-ccCCccEEEE--
Confidence                   2222222233333333 44445554432278899999999999999999987 66 4653 5788999999  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----CCcEEEEeec-CHHHHHHHHHHHHHHHHHHh
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFAV-EPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~Rl~~~~-~~~~l~~~~~~l~~~l~~~~  230 (233)
                             ++++.    +. +..++..+++ ++||.+.||+.|+.    .+++|++++. +++++++++++|.+++++..
T Consensus       329 -------~~~~~----~~-~~~~~~~~l~-~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~  394 (397)
T 2zyj_A          329 -------MELPK----GL-SAEGLFRRAL-EENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRALKGLL  394 (397)
T ss_dssp             -------EECST----TC-CHHHHHHHHH-HTTEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             -------EEcCC----CC-CHHHHHHHHH-HCCCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence                   55542    11 3445555554 55999999999963    5899999997 69999999999999998764

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.93  E-value=5.9e-25  Score=189.79  Aligned_cols=195  Identities=19%  Similarity=0.326  Sum_probs=147.4

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCC--ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS--IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|+++|++||+++|+||+|.++.+++..+.++..+..  .++++++.|+||.++++|+|+||++++++ .+.        
T Consensus       188 ~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~~~--------  258 (391)
T 4dq6_A          188 KLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDE-KDY--------  258 (391)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSH-HHH--------
T ss_pred             HHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCH-HHH--------
Confidence            6889999999999999999999998766666766654  47899999999999999999999999762 232        


Q ss_pred             hhhhhHHhhhhhhh-h-ccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCCccEEEEE
Q 047983           80 HSISLNMRMDDYLL-L-SESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKE-IPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        80 ~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~  155 (233)
                            ..+..... . ..+++... .+....+.. .++++++.++.++++++.+.+.|++ ++++.. ..|.+++++| 
T Consensus       259 ------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~-  329 (391)
T 4dq6_A          259 ------KLLDDAFTRIDIKRNNCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLKV-RKPEGTYLLW-  329 (391)
T ss_dssp             ------HHHHHHHHHTTCCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEE-CCCSBSSEEE-
T ss_pred             ------HHHHHHHHhhcCCCCCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEe-cCCCccEEEE-
Confidence                  22222211 1 11223332 333333332 3567899999999999999999988 788775 7899999999 


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                              +.++..   +. +..++..++++++||.+.||+.|+.  .+++|++++.+++++++++++|.+++
T Consensus       330 --------~~~~~~---~~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l  390 (391)
T 4dq6_A          330 --------VDFSAL---GL-SDEELESILVQKGKVALNQGNSFGIGGSGYQRINLACPRSMLEEALIRIKNAI  390 (391)
T ss_dssp             --------EECGGG---CC-CHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             --------EEhhhc---CC-CHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence                    555421   11 3556666666555999999999986  58999999999999999999999876

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.93  E-value=3.4e-25  Score=192.80  Aligned_cols=199  Identities=17%  Similarity=0.143  Sum_probs=139.7

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccch-hhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGV-AFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~-~~~   79 (233)
                      +|+++|+++|++||+||+|.++.+++..+.++..++. .++++++.|+||.|+++|+|+||+++++  .+.+.... +  
T Consensus       187 ~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~--~~~~~~~~~~--  262 (400)
T 3asa_A          187 AIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQ--ELTYADGHFV--  262 (400)
T ss_dssp             HHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCT--TCBCTTSCBH--
T ss_pred             HHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeCh--hhccchhhhH--
Confidence            6889999999999999999998877644445555543 4679999999999999999999999987  34100000 1  


Q ss_pred             hhhhhHHhh---hhhhhh-ccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEE
Q 047983           80 HSISLNMRM---DDYLLL-SESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        80 ~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~  155 (233)
                            ..+   .....+ +.++..+ .+....++..   ++++.++.++++++.+.+.|+++ ++.. ..|.+|+|+| 
T Consensus       263 ------~~~~~~~~~~~~~~~~~~~~-~a~~~~l~~~---~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~-  329 (400)
T 3asa_A          263 ------IQDWERFLSTTFNGASIPAQ-EAGVAGLSIL---PQLEAIHYYRENSDLLRKALLAT-GFEV-FGGEHAPYLW-  329 (400)
T ss_dssp             ------HHHHHHHHHHHCCCCCHHHH-HHHHHHHHHT---TTCHHHHHHHHHHHHHHHHHHHT-TCEE-EECSSSSEEE-
T ss_pred             ------HHHHHHHhccCccCCChHHH-HHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHHC-CCee-eCCCCceEEE-
Confidence                  111   111112 2333333 4444444333   67888999999999999999887 5553 5677899999 


Q ss_pred             ecCCCccccc-ccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          156 CGSEDKCLLK-LNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       156 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                              ++ ++.    +. ++.++..++++++||.+.||+.|+.  .+++|+++..+++++++++++|.++++++.
T Consensus       330 --------~~~~~~----~~-~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~~  394 (400)
T 3asa_A          330 --------VKPTQA----NI-SDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAACERLQMAPALQS  394 (400)
T ss_dssp             --------EECCCT----TC-CTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCSCHHHHHHHHHHHHC------
T ss_pred             --------EeccCC----CC-CHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCCHHHHHHHHHHHHHHHHhhh
Confidence                    55 432    11 2446667777778999999999974  689999977789999999999999988764

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.93  E-value=1.3e-24  Score=188.98  Aligned_cols=200  Identities=23%  Similarity=0.400  Sum_probs=148.2

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++||++||+||+|+++.+++..+.++..++..+++++++|+||.++ ||+|+||+++++  ++++.   +    
T Consensus       199 ~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~--~~~~~---~----  268 (407)
T 2zc0_A          199 ALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-TGFRIGWIIAEG--EILKK---V----  268 (407)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-TTSCCEEEECCH--HHHHH---H----
T ss_pred             HHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC-CCcceEEEecCH--HHHHH---H----
Confidence            7899999999999999999999887765556666666678999999999988 999999999976  34421   1    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HH-HHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCCccEEEEEecC
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EE-EFFSKITDILREAADICCDRLKE-IPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~~  158 (233)
                          .......+++.++..+ .++..+++.. .+ +++++.++.++++++.+.+.|++ ++++.. ..|.+|+|+|    
T Consensus       269 ----~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~----  338 (407)
T 2zc0_A          269 ----LMQKQPIDFCAPAISQ-YIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEF-TKPIAGMFVM----  338 (407)
T ss_dssp             ----HHHHTTTTSSSCHHHH-HHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCB-CCCSBSSEEE----
T ss_pred             ----HHHHHhhcCCCCHHHH-HHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEE-ecCCCcEEEE----
Confidence                2222222223333333 4445555443 34 67888999999999999999987 666653 5688899999    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----CCcEEEEeec-CHHHHHHHHHHHHHHHHHHhh
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFAV-EPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~Rl~~~~-~~~~l~~~~~~l~~~l~~~~~  231 (233)
                           ++++.    +. +..++...+++++||.+.||+.|+.    .+++|++++. +++++++++++|.+++++..+
T Consensus       339 -----~~~~~----~~-~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~~  406 (407)
T 2zc0_A          339 -----FFLPE----GA-DGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKLYKEKFG  406 (407)
T ss_dssp             -----EECST----TC-CHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHHHHHHC-
T ss_pred             -----EEcCC----CC-CHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHhc
Confidence                 55532    12 3555666655555999999999863    5899999997 689999999999999987643

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.92  E-value=4.7e-25  Score=193.21  Aligned_cols=196  Identities=17%  Similarity=0.276  Sum_probs=149.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCC--ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS--IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|+++|++||++||+||+|+++.+++..+.++..+..  .++++++.|+||.++++|+|+||++++++ ++.        
T Consensus       218 ~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~-~l~--------  288 (421)
T 3l8a_A          218 KIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNE-SLR--------  288 (421)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSH-HHH--------
T ss_pred             HHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCH-HHH--------
Confidence            6899999999999999999999998876667766643  57899999999999999999999999842 233        


Q ss_pred             hhhhhHHhhhhhh-hhcc-CcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           80 HSISLNMRMDDYL-LLSE-SVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        80 ~~~~~~~~~~~~~-~~~~-~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                            ..+.... ..+. ++++.. .+..+.++ ..++++++.++.++++++.+.+.|++++++.. ..|++++++|  
T Consensus       289 ------~~~~~~~~~~~~~~~n~~~~~a~~aal~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~-~~~~~~~~~~--  358 (421)
T 3l8a_A          289 ------RKFQYRQLANNQHEVPTVGMIATQAAFQ-YGKPWLEELKTVIEGNIKLVIKELEAKTKIKV-MEPEGTYLVW--  358 (421)
T ss_dssp             ------HHHHHHHHHTTCSCCCHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHHCSCEE-ECCSBSSEEE--
T ss_pred             ------HHHHHHHHhcccCCCCHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHhCCCceE-eCCCeeEEEE--
Confidence                  2222221 1111 233333 33333333 34678999999999999999999988767764 7899999999  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                             +.++..   +. +..++...+++++||.+.||+.|+.  .+++|++++.+++++++++++|.++++
T Consensus       359 -------v~~~~~---~~-~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~  420 (421)
T 3l8a_A          359 -------LDFSAY---AI-AQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEALSRIISVFG  420 (421)
T ss_dssp             -------EECGGG---TC-CTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred             -------Eecccc---CC-CHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence                   544321   11 3556677777788999999999975  689999999999999999999998874

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.92  E-value=4.2e-25  Score=193.34  Aligned_cols=188  Identities=15%  Similarity=0.086  Sum_probs=133.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCC--cccccccc-CCccCEEEEccCccccCCCCceEEEEEecC-CCccccccchh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNT--HFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGWLVTSD-PNGILQDLGVA   77 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~--~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~-~~~~~~~~~~~   77 (233)
                      +|+++|++||++||+||+|.+|.+++.  ...++..+ ...+++|+++||||+|++||||+||+++.. .+++++  .+.
T Consensus       198 ~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~--~~~  275 (405)
T 3k7y_A          198 EIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKK--IVF  275 (405)
T ss_dssp             HHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHH--HHH
T ss_pred             HHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHH--HHH
Confidence            689999999999999999999998642  22233333 335789999999999999999999987532 112332  111


Q ss_pred             hhhhhhhHHhhhhhhh-hccCcchHH-HHHHHHhhhc-----HHHHHHHHHHHHHHHHHHHHHHhh----cCCC---ccc
Q 047983           78 FFHSISLNMRMDDYLL-LSESVYTTV-GAVPQILEKT-----EEEFFSKITDILREAADICCDRLK----EIPC---ITC  143 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~L~----~~~~---~~~  143 (233)
                              ..+..... ...+++.+. .+++.++.+.     +.++++.+++.+++||+.+.+.|+    +++.   +..
T Consensus       276 --------~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~  347 (405)
T 3k7y_A          276 --------NNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNV  347 (405)
T ss_dssp             --------HHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGG
T ss_pred             --------HHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcc
Confidence                    22222111 112333343 4555555442     346678888999999999999999    7632   553


Q ss_pred             ccCCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHH
Q 047983          144 PKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRM  222 (233)
Q Consensus       144 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l  222 (233)
                       .+|+||||+|         +.++         + +++.++ +++||.++||.        |||++. +++++++++++|
T Consensus       348 -~~p~gg~f~~---------~~l~---------~-~~~~~L-~~~gV~v~p~~--------Ris~a~~~~~~i~~~~~~i  398 (405)
T 3k7y_A          348 -YKKQRGLFSF---------VPLL---------A-KIAEHL-KTHHIYIINNG--------RINVSGITKNNVDYIADKI  398 (405)
T ss_dssp             -GSSCCSSEEE---------CGGG---------G-GGTTTT-TTTTEECCTTS--------EEEGGGCCTTHHHHHHHHH
T ss_pred             -ccCCceEEEe---------cCCC---------H-HHHHHH-HHCCEeecCCC--------eEEEeccCHHHHHHHHHHH
Confidence             7899999999         4442         1 345555 89999999964        999986 889999999999


Q ss_pred             HHHHHH
Q 047983          223 KAFYYR  228 (233)
Q Consensus       223 ~~~l~~  228 (233)
                      .+++++
T Consensus       399 ~~~~~~  404 (405)
T 3k7y_A          399 CLSLSQ  404 (405)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            998763

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.92  E-value=2.4e-24  Score=185.25  Aligned_cols=192  Identities=24%  Similarity=0.450  Sum_probs=144.7

Q ss_pred             HHHHHHHcCcEEEEccccCccccCCCccccccccC-CccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            3 IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         3 i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      |+++|++||++||+||+|+++.+++ .+.++..++ ..++++++.|+||.++++|+|+||+++++  ++++.   +    
T Consensus       175 l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--~~~~~---~----  244 (370)
T 2z61_A          175 IYEFAYENIPYIISDEIYNGLVYEG-KCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISND--EIIEA---I----  244 (370)
T ss_dssp             HHHHHHHHCSEEEEECTTTTCBSSS-CCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCH--HHHHH---H----
T ss_pred             HHHHHHHcCCEEEEEcchhhcccCC-CCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECH--HHHHH---H----
Confidence            7899999999999999999998876 334555443 45789999999999999999999999987  44421   1    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCCc
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDK  161 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (233)
                          .........+.++..+ .++.+.++....+++++.++.++++++.+.+.|+++ ++.. ..|++|+|+|       
T Consensus       245 ----~~~~~~~~~~~~~~~~-~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~-------  310 (370)
T 2z61_A          245 ----LKLQQNLFISAPTISQ-YAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWEV-NNPIGAYYVF-------  310 (370)
T ss_dssp             ----HHHHHHHTSSSCHHHH-HHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBC-CCCCBTTEEC-------
T ss_pred             ----HHHHhhcccCCCHHHH-HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCee-cCCCcceEEE-------
Confidence                2222222223333333 444455533136788999999999999999999887 6654 6788999999       


Q ss_pred             ccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 047983          162 CLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                        +.++  .     +..++..++++++||.+.||+.|+.  .+++|++++.+++++++++++|.++++
T Consensus       311 --~~~~--~-----~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          311 --PNIG--E-----DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             --CBCS--S-----CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred             --EecC--C-----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence              5443  1     2556666666688999999999975  689999999999999999999998874

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.92  E-value=6.3e-25  Score=191.65  Aligned_cols=201  Identities=23%  Similarity=0.381  Sum_probs=148.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||++||+||+|.++.+++..+.++..++. .++++++.|+||.++++|+|+||+++++  ++++.   +  
T Consensus       183 ~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--~~~~~---l--  255 (411)
T 2o0r_A          183 AAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGPA--ELIAG---V--  255 (411)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECCH--HHHHH---H--
T ss_pred             HHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeCH--HHHHH---H--
Confidence            36899999999999999999999987755556655543 5789999999999999999999999976  44421   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                            ........++.++..+ .++...++.. .+++++.++.++++++++.+.|+++ ++.. ..|.+|+|+|     
T Consensus       256 ------~~~~~~~~~~~~~~~~-~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~g~~~~-----  320 (411)
T 2o0r_A          256 ------RAAKQYLSYVGGAPFQ-PAVALALDTE-DAWVAALRNSLRARRDRLAAGLTEI-GFAV-HDSYGTYFLC-----  320 (411)
T ss_dssp             ------HHHHHHHTSCCCTTHH-HHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHH-TCEE-CCCCBSSEEE-----
T ss_pred             ------HHHHhhccCCCChHHH-HHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHc-CCEe-cCCCeeEEEE-----
Confidence                  2222333344444444 3444444333 6788999999999999999999886 5553 6788999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-------------CCcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-------------KDWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------~~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                          ++++.  ..+. ++.++..++++++||.+.||+.|..             .+++|++++.+++++++++++|.+++
T Consensus       321 ----~~~~~--~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~~  393 (411)
T 2o0r_A          321 ----ADPRP--LGYD-DSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVLA  393 (411)
T ss_dssp             ----EECGG--GTCC-CHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHHHHHHHHGGGG
T ss_pred             ----EecCC--CCCC-CHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence                55532  1111 3566677777788999999999832             47899999988999999999999887


Q ss_pred             HHHh
Q 047983          227 YRHA  230 (233)
Q Consensus       227 ~~~~  230 (233)
                      ++..
T Consensus       394 ~~~~  397 (411)
T 2o0r_A          394 ERPA  397 (411)
T ss_dssp             C---
T ss_pred             hccC
Confidence            6654

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.92  E-value=2.9e-25  Score=191.97  Aligned_cols=194  Identities=22%  Similarity=0.371  Sum_probs=144.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccC-CccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||++||+||+|+++.+++..+.++..+. ..++++++.|+||.++++|+|+||+++++  ++++.   +   
T Consensus       187 ~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--~~~~~---l---  258 (386)
T 1u08_A          187 ALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPA--PISAE---I---  258 (386)
T ss_dssp             HHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCH--HHHHH---H---
T ss_pred             HHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCH--HHHHH---H---
Confidence            689999999999999999999998776555665553 35789999999999999999999999986  44421   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                           ........++.++..+ .++...++.. ++++++.++.++++++.+.+.|+++ ++.. ..|++|+|+|      
T Consensus       259 -----~~~~~~~~~~~~~~~~-~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~g~~~~------  323 (386)
T 1u08_A          259 -----RKVHQYLTFSVNTPAQ-LALADMLRAE-PEHYLALPDFYRQKRDILVNALNES-RLEI-LPCEGTYFLL------  323 (386)
T ss_dssp             -----HHHHHHHTSSCCHHHH-HHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSS-SCEE-CCCCBSSEEE------
T ss_pred             -----HHHHHhhccCCChHHH-HHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHC-CCee-cCCCceEEEE------
Confidence                 2222222333333333 4444445433 5688999999999999999999887 5654 6788899999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccC----CCCcEEEEeecCHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG----LKDWLRITFAVEPSAFEIGLGRMKA  224 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~----~~~~~Rl~~~~~~~~l~~~~~~l~~  224 (233)
                         ++++..  ... ++.++..++++++||.+.||+.|+    ..+++|++++.+++++++++++|.+
T Consensus       324 ---~~~~~~--~~~-~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~  385 (386)
T 1u08_A          324 ---VDYSAV--STL-DDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ  385 (386)
T ss_dssp             ---EECTTT--CCS-CHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred             ---EecCCC--CCC-CHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhh
Confidence               554321  001 355666667778899999999886    3579999999999999999999864

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.92  E-value=1.1e-24  Score=187.75  Aligned_cols=191  Identities=23%  Similarity=0.320  Sum_probs=140.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcccccccc-CCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||++||+||+|.++.+++. +.++... +..++++++.|+||.++++|+|+||+++++  ++++.   +   
T Consensus       182 ~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--~~~~~---l---  252 (376)
T 2dou_A          182 EALGLARKHGLWLIHDNPYVDQVYEGE-APSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSE--EALAR---L---  252 (376)
T ss_dssp             HHHHHHHHTTCEEEEECTTGGGBSSSC-CCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEECH--HHHHH---H---
T ss_pred             HHHHHHHHcCCEEEEEccchhcccCCC-CCChhhcCCCCCcEEEEecchhhcCChhheeEEEecCH--HHHHH---H---
Confidence            688999999999999999999988763 2233322 445789999999999999999999999876  34421   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                           .......+.+.++..+ .++...++. .++++++.++.++++++.+.+.|+++  +. +..|.+|+|+|      
T Consensus       253 -----~~~~~~~~~~~~~~~~-~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~--~~-~~~~~~~~~~~------  316 (376)
T 2dou_A          253 -----ERVKGVIDFNQYAGVL-RMGVEALKT-PKEVVRGYARVYRERALGMAEALKGV--LS-LLPPRATMYLW------  316 (376)
T ss_dssp             -----HHHHHHHCCCSCHHHH-HHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHHHTTT--SE-ECCCCBSSEEE------
T ss_pred             -----HHHHHhcccCCCHHHH-HHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHh--cC-ccCCCeeEEEE------
Confidence                 2222222223333333 444444443 36788999999999999999999886  44 35788999999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                         ++++.    +. +..++..+++ ++||.+.||+.|+.  .+++|++++.+++++++++++|.+++
T Consensus       317 ---~~~~~----~~-~~~~~~~~l~-~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          317 ---GRLPE----GV-DDLEFGLRLV-ERGVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREAL  375 (376)
T ss_dssp             ---EECCT----TC-CHHHHHHHHH-HTTEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred             ---EECCC----CC-CHHHHHHHHH-HCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence               55542    12 3455555555 45999999999975  68999999988899999999998764

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.92  E-value=4.2e-25  Score=193.64  Aligned_cols=202  Identities=18%  Similarity=0.320  Sum_probs=147.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccC-CccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||++||+||+|.++.+++..+.++..+. ..++++++.|+||.++++|+|+||+++++  .+++.   +  
T Consensus       205 ~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~--~~~~~---l--  277 (429)
T 1yiz_A          205 EVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPE--ALLKN---L--  277 (429)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCH--HHHHH---H--
T ss_pred             HHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEEEEeCH--HHHHH---H--
Confidence            3689999999999999999999998876555665553 45789999999999999999999999986  34421   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhh-----c-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEE
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEK-----T-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFV  153 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~  153 (233)
                            ........++.++..+ .++...++.     . .++++++.++.++++++.+.+.|+++ ++.. ..|.+|+|+
T Consensus       278 ------~~~~~~~~~~~~~~~~-~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~g~~~  348 (429)
T 1yiz_A          278 ------QMVHQNCVYTCATPIQ-EAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNP-TVPQGGYFM  348 (429)
T ss_dssp             ------HHHHHTTTCCCCHHHH-HHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-TCEE-EECSBSSEE
T ss_pred             ------HHHHhhcccCCChHHH-HHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC-CCcc-cCCCcceEE
Confidence                  2222222334333333 444444443     2 25688999999999999999999886 5553 578889999


Q ss_pred             EEecCCCcccccccccc-------cCCCCChHHHHHHHHhccCEEEECCcccCC-------CCcEEEEeecCHHHHHHHH
Q 047983          154 MYCGSEDKCLLKLNYSL-------LEGINSDTEFALKLAKEESIIVLPGITVGL-------KDWLRITFAVEPSAFEIGL  219 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------~~~~Rl~~~~~~~~l~~~~  219 (233)
                      |         ++++...       .....++.++..++++++||.+.||+.|+.       .+++|++++.+++++++++
T Consensus       349 ~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~l  419 (429)
T 1yiz_A          349 V---------ADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAA  419 (429)
T ss_dssp             E---------EECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCHHHHHHHH
T ss_pred             E---------EEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecCCHHHHHHHH
Confidence            9         5543210       000012445666677789999999998863       5799999999999999999


Q ss_pred             HHHHHHHH
Q 047983          220 GRMKAFYY  227 (233)
Q Consensus       220 ~~l~~~l~  227 (233)
                      ++|.++++
T Consensus       420 ~~l~~~l~  427 (429)
T 1yiz_A          420 EILRKWKG  427 (429)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHhcc
Confidence            99988763

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.92  E-value=4.7e-25  Score=193.47  Aligned_cols=198  Identities=14%  Similarity=0.113  Sum_probs=146.3

Q ss_pred             hHHHHH-HHcCcEEEEccccCccccCCCcc--cccccc----CCccCEEEEccCccccCCCCceEEEEEecCCCcccccc
Q 047983            2 CIEETT-KKLGIMVIADEVYGHLVFGNTHF--VPMGVF----GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDL   74 (233)
Q Consensus         2 ~i~~l~-~~~~~~lI~De~y~~~~~~~~~~--~~~~~~----~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~   74 (233)
                      +|+++| ++||++||+||+|.++.|++...  .++..+    +..+++|+++||||. ++||+|+||+++++  .+++. 
T Consensus       205 ~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~G~r~G~~~~~~--~l~~~-  280 (427)
T 3ppl_A          205 RLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKI-TLAGAGVSFFLTSA--ENRKW-  280 (427)
T ss_dssp             HHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTT-SCTTSSCEEEECCH--HHHHH-
T ss_pred             HHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhc-cCcCccEEEEEcCH--HHHHH-
Confidence            788999 99999999999999988876442  234333    356889999999999 99999999999987  44421 


Q ss_pred             chhhhhhhhhHHhhhhhhhhccCcchHHHHHHHHhhh-c-HHHHHHHHHHHHHHHHHHHHHHhhc-CC---CcccccCCC
Q 047983           75 GVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEK-T-EEEFFSKITDILREAADICCDRLKE-IP---CITCPKKPE  148 (233)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~l~~~L~~-~~---~~~~~~~~~  148 (233)
                        +        ........++.+...+ .+++.+++. . ..+++++.++.++++++.+.+.|++ ++   ++. +..|+
T Consensus       281 --~--------~~~~~~~~~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~-~~~p~  348 (427)
T 3ppl_A          281 --Y--------TGHAGIRGIGPNKVNQ-LAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQ-WTVPA  348 (427)
T ss_dssp             --H--------HHHHHHHCSCCCHHHH-HHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCE-ECCCS
T ss_pred             --H--------HHHhhcccCCCCHHHH-HHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceE-EeCCC
Confidence              1        2233333344434444 455555554 2 4578999999999999999998866 43   344 36789


Q ss_pred             ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEEC-CcccC-----CCCcEEEEeec-CHHHHHHHHHH
Q 047983          149 GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLP-GITVG-----LKDWLRITFAV-EPSAFEIGLGR  221 (233)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~-----~~~~~Rl~~~~-~~~~l~~~~~~  221 (233)
                      +|+|+|         ++++..       +.+.+.+.|.++||.+.| |..|+     ..+++|++++. +++++++++++
T Consensus       349 ~g~~~~---------~~~~~~-------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~  412 (427)
T 3ppl_A          349 GGYFIS---------LDVVPG-------TASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDG  412 (427)
T ss_dssp             BSSCEE---------EECSTT-------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHH
T ss_pred             ccEEEE---------EECCcc-------hHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHHHHHH
Confidence            999999         555421       344455677788999999 66665     26899999998 89999999999


Q ss_pred             HHHHHHHHhh
Q 047983          222 MKAFYYRHAK  231 (233)
Q Consensus       222 l~~~l~~~~~  231 (233)
                      |.+++++...
T Consensus       413 l~~~l~~~~~  422 (427)
T 3ppl_A          413 VATCVLLAAA  422 (427)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987653

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.92  E-value=1.2e-24  Score=190.82  Aligned_cols=198  Identities=14%  Similarity=0.105  Sum_probs=143.1

Q ss_pred             hHHHHHH-HcCcEEEEccccCc--cccCCCccccccc----cCCccCEEEEccCccccCCCCceEEEEEecCCCcccccc
Q 047983            2 CIEETTK-KLGIMVIADEVYGH--LVFGNTHFVPMGV----FGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDL   74 (233)
Q Consensus         2 ~i~~l~~-~~~~~lI~De~y~~--~~~~~~~~~~~~~----~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~   74 (233)
                      +|+++|+ +||++||+||+|.+  |.+++..+.++..    .+..+++|+++||||. ++||+|+||+++++  ++++. 
T Consensus       203 ~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~~~~--~l~~~-  278 (422)
T 3d6k_A          203 ELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSGVSFFASSK--ENIEW-  278 (422)
T ss_dssp             HHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSSCEEEECCH--HHHHH-
T ss_pred             HHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcccceEEEEeCH--HHHHH-
Confidence            6888998 99999999999986  4433323334422    3456889999999999 99999999999986  44421 


Q ss_pred             chhhhhhhhhHHhhhhhhhhccCcchHHHHHHHHhhh-c-HHHHHHHHHHHHHHHHHHHHHHhhc-CC---CcccccCCC
Q 047983           75 GVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEK-T-EEEFFSKITDILREAADICCDRLKE-IP---CITCPKKPE  148 (233)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~l~~~L~~-~~---~~~~~~~~~  148 (233)
                        +        .......+.+.+...+ .+...+++. . ..+++++.++.++++++.+.+.|++ ++   ++. +..|+
T Consensus       279 --l--------~~~~~~~~~~~~~~~q-~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~-~~~p~  346 (422)
T 3d6k_A          279 --Y--------ASHANVRGIGPNKLNQ-LAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAK-WTSPT  346 (422)
T ss_dssp             --H--------HHHHHHHCSCCCHHHH-HHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEE-ECCCS
T ss_pred             --H--------HHHHHhhcCCCCHHHH-HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceE-EeCCC
Confidence              1        2222323333333333 444555544 2 3578999999999999999998865 32   344 35788


Q ss_pred             ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEEC-CcccC-----CCCcEEEEee-cCHHHHHHHHHH
Q 047983          149 GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLP-GITVG-----LKDWLRITFA-VEPSAFEIGLGR  221 (233)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~-----~~~~~Rl~~~-~~~~~l~~~~~~  221 (233)
                      +|+|+|         ++++..       +.+.+.++|+++||.+.| |..|+     ..+++|+|++ .+++++++++++
T Consensus       347 ~g~~~~---------~~~~~~-------~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i~~~~~~  410 (422)
T 3d6k_A          347 GGYFIS---------VDVVPG-------TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDG  410 (422)
T ss_dssp             BSSCEE---------EEESTT-------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHH
T ss_pred             cceEEE---------EECCCC-------CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHHHHHHHH
Confidence            999999         555421       345567788899999999 55564     2589999999 499999999999


Q ss_pred             HHHHHHHHhh
Q 047983          222 MKAFYYRHAK  231 (233)
Q Consensus       222 l~~~l~~~~~  231 (233)
                      |.+++++..+
T Consensus       411 l~~~l~~~~~  420 (422)
T 3d6k_A          411 FATCVLMAAL  420 (422)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999987654

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.92  E-value=3.1e-24  Score=188.18  Aligned_cols=201  Identities=20%  Similarity=0.313  Sum_probs=144.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCC--------ccCEEEEccCccccCCCCceEEEEEecCCCccccc
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS--------IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD   73 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~--------~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~   73 (233)
                      +|+++|++||++||+||+|.++.+++..+.++..+..        .++++++.|+||.|+++|+|+||++++++ .++  
T Consensus       212 ~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~-~~~--  288 (428)
T 1iay_A          212 SVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFND-DVV--  288 (428)
T ss_dssp             HHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCH-HHH--
T ss_pred             HHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCH-HHH--
Confidence            6899999999999999999998887654445544432        47899999999999999999999999642 233  


Q ss_pred             cchhhhhhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhc--HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcc
Q 047983           74 LGVAFFHSISLNMRMDDYLL-LSESVYTTVGAVPQILEKT--EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGS  150 (233)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g  150 (233)
                                  ..+..... ++.+...+ .++..+++..  .++++++.++.++++++.+.+.|+++ ++.. .++++|
T Consensus       289 ------------~~~~~~~~~~~~~~~~~-~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~g  353 (428)
T 1iay_A          289 ------------NCARKMSSFGLVSTQTQ-YFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKC-LKNNAG  353 (428)
T ss_dssp             ------------HHHHHHHTTSCCCHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCB-CCCSSS
T ss_pred             ------------HHHHHHHhcccCCHHHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcc-cCCCee
Confidence                        33322222 23333333 4555555443  24578899999999999999999887 5553 567789


Q ss_pred             EEEEEecCCCccccccccccc-CCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEee-cCHHHHHHHHHHHHHHH
Q 047983          151 MFVMYCGSEDKCLLKLNYSLL-EGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFA-VEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~-~~~~~l~~~~~~l~~~l  226 (233)
                      +|+|         ++++.... ....+..++..++++++||.+.||+.|+.  .+++|++++ .+++++++++++|.+++
T Consensus       354 ~~~~---------~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l  424 (428)
T 1iay_A          354 LFCW---------MDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFV  424 (428)
T ss_dssp             SEEE---------EECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred             EEEE---------EechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHH
Confidence            9999         55432100 00001234455555556999999999875  579999999 58999999999999988


Q ss_pred             HHH
Q 047983          227 YRH  229 (233)
Q Consensus       227 ~~~  229 (233)
                      ++.
T Consensus       425 ~~~  427 (428)
T 1iay_A          425 GVE  427 (428)
T ss_dssp             HTT
T ss_pred             hcc
Confidence            653

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.92  E-value=4.1e-24  Score=185.34  Aligned_cols=193  Identities=20%  Similarity=0.306  Sum_probs=139.6

Q ss_pred             hHHHHHHH------cCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccc
Q 047983            2 CIEETTKK------LGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLG   75 (233)
Q Consensus         2 ~i~~l~~~------~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~   75 (233)
                      +|+++|++      ||++||+||+|.++.+++......  ....+++++++|+||.|+++|+|+||+++++  .+++...
T Consensus       196 ~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~--~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--~~~~~~~  271 (398)
T 3ele_A          196 KLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFV--TKYYDNTLVCYSYSKSLSLPGERIGYVLVPD--EVYDKAE  271 (398)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCG--GGTCSSEEEEEESTTTSSCTTTCCEEEECCT--TSTTHHH
T ss_pred             HHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCCh--HhhcCCeEEEEehhhcCCCccceeEEEEEcc--hhhhHHH
Confidence            57899999      999999999999999876433222  2335789999999999999999999999988  3332111


Q ss_pred             hhhhhhhhhHHhhhhhhhh--ccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEE
Q 047983           76 VAFFHSISLNMRMDDYLLL--SESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMF  152 (233)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~  152 (233)
                      +.        ..+......  ..+++... .++..+++...      .++.++++++.+.+.|+++ ++.. ..|++++|
T Consensus       272 ~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~  335 (398)
T 3ele_A          272 LY--------AAVCGAGRALGYVCAPSLFQKMIVKCQGATG------DINAYKENRDLLYEGLTRI-GYHC-FKPDGAFY  335 (398)
T ss_dssp             HH--------HHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC------CHHHHHHHHHHHHHHHHHH-TCCE-ECCSBSSE
T ss_pred             HH--------HHHHHHhhhccccCCCHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHc-CCee-cCCCeeEE
Confidence            12        222221111  22333333 44444443322      4677888999999999886 5553 67899999


Q ss_pred             EEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          153 VMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                      +|         ++++.     . +..++ .+.|+++||.+.||+.|+..+++|++++.+++++++++++|.+++++++
T Consensus       336 ~~---------~~~~~-----~-~~~~~-~~~l~~~gi~v~~g~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~~~  397 (398)
T 3ele_A          336 MF---------VKALE-----D-DSNAF-CEKAKEEDVLIVAADGFGCPGWVRISYCVDREMIKHSMPAFEKIYKKYN  397 (398)
T ss_dssp             EE---------EECSS-----S-CHHHH-HHHHHTTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             EE---------EEcCC-----C-CHHHH-HHHHHHCCEEEeCccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence            99         55431     1 24444 4567788999999999998899999999899999999999999998764

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.92  E-value=1.2e-24  Score=187.22  Aligned_cols=188  Identities=20%  Similarity=0.266  Sum_probs=140.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcccccccc-C-----CccCEEEEccCccccCCCCceEEEEEecCCCccccccc
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVF-G-----SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLG   75 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~-~-----~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~   75 (233)
                      +|+++|++||++||+||+|.++.+++. +.++... +     ..++++++.|+||.+|++|+|+||+++++  ++++.  
T Consensus       178 ~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~--~~~~~--  252 (376)
T 3ezs_A          178 SWVKLALKHDFILINDECYSEIYENTP-PPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDS--RLLEK--  252 (376)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTCBSSSC-CCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECH--HHHHH--
T ss_pred             HHHHHHHHcCcEEEEEccchhhccCCC-CCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeCH--HHHHH--
Confidence            688899999999999999999998873 3333222 1     46889999999999999999999999876  34321  


Q ss_pred             hhhhhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEE
Q 047983           76 VAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~  155 (233)
                       +        .........+.++..+ .+....++.  .+++++.++.++++++.+.+.|+   ++   ..|.+|+|+| 
T Consensus       253 -~--------~~~~~~~~~~~~~~~~-~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~---~~---~~~~~~~~~~-  313 (376)
T 3ezs_A          253 -Y--------KAFRAYLGYTSANAIQ-KASEAAWLD--DRHAEFFRNIYANNLKLARKIFK---NT---LIYPYSFYVY-  313 (376)
T ss_dssp             -H--------HHHHTTTCCCCCHHHH-HHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST---TC---CCCSBSSEEE-
T ss_pred             -H--------HHHHhhhcCCCChHHH-HHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc---CC---CCCCcceEEE-
Confidence             1        2222222233333333 444444432  45689999999999999999997   33   3688999999 


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC----CCCcEEEEeecCHHHHHHHHHHHHHHHHHH
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG----LKDWLRITFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~----~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                              ++++        +..++..++++++||.+.||+.|+    ..+++|++++.+++++++++++|.++++++
T Consensus       314 --------~~~~--------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~~~  375 (376)
T 3ezs_A          314 --------LPVQ--------NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYRENH  375 (376)
T ss_dssp             --------EECS--------CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHHHHCC-
T ss_pred             --------EECC--------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence                    5554        266777777766899999999998    368999999889999999999999988643

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.92  E-value=6.5e-24  Score=183.76  Aligned_cols=195  Identities=17%  Similarity=0.257  Sum_probs=143.9

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCc--cCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSI--VPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~--~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|+++|++||++||+||+|.++.+++..+.++..++..  ++   +.|+||.++++|+|+||++++++ .++        
T Consensus       186 ~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~---~~s~sK~~~~~G~r~G~~~~~~~-~~~--------  253 (390)
T 1d2f_A          186 IMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL---LTSGSKSFNIPALTGAYGIIENS-SSR--------  253 (390)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE---EECSHHHHTCGGGCCEEEEECSH-HHH--------
T ss_pred             HHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh---ccCccHhhcccChhheEEEECCH-HHH--------
Confidence            68999999999999999999999887655566555432  32   99999999999999999999742 233        


Q ss_pred             hhhhhHHhhhhhhh--hcc-CcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCCccEEEE
Q 047983           80 HSISLNMRMDDYLL--LSE-SVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKE-IPCITCPKKPEGSMFVM  154 (233)
Q Consensus        80 ~~~~~~~~~~~~~~--~~~-~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~  154 (233)
                            ..+.....  ... ++++.. .+..+.++. ..+++++.++.++++++.+.+.|++ ++++.. ..|.|++++|
T Consensus       254 ------~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~  325 (390)
T 1d2f_A          254 ------DAYLSALKGRDGLSSPSVLALTAHIAAYQQ-GAPWLDALRIYLKDNLTYIADKMNAAFPELNW-QIPQSTYLAW  325 (390)
T ss_dssp             ------HHHHHHHHTTSCCCSCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCC-CCCSBCSEEE
T ss_pred             ------HHHHHHHhhhcccCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEE-ecCCccEEEE
Confidence                  22222211  111 223332 333333332 3568899999999999999999988 777764 6788999999


Q ss_pred             EecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHH
Q 047983          155 YCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                               ++++..   +. +..++...+++++||.+.||+.|+.  .+++|++++.+++++++++++|.++++++
T Consensus       326 ---------~~~~~~---~~-~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~~  389 (390)
T 1d2f_A          326 ---------LDLRPL---NI-DDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAV  389 (390)
T ss_dssp             ---------EECGGG---CC-CHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             ---------EEcccc---CC-CHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence                     555421   12 3455555555578999999999973  68999999998899999999999998765

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.92  E-value=4.4e-24  Score=185.98  Aligned_cols=200  Identities=22%  Similarity=0.385  Sum_probs=146.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccC-EEEEccCccccCCCCceEEEEE--ecCCC--ccccccch
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGWLV--TSDPN--GILQDLGV   76 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~-~i~~~s~sK~~~~~G~R~G~~~--~~~~~--~~~~~~~~   76 (233)
                      +|+++|++||++||+||+|+++.+++ .+.++..++ .++ ++++.|+||.++++|+|+||++  +++..  ++++.   
T Consensus       198 ~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~---  272 (406)
T 1xi9_A          198 EILNIAGEYEIPVISDEIYDLMTYEG-EHISPGSLT-KDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREA---  272 (406)
T ss_dssp             HHHHHHHHHTCCEEEECTTTTCBSSS-CCCCHHHHC-SSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHH---
T ss_pred             HHHHHHHHcCCEEEEEcCccccccCC-CCCCHHHcC-CCceEEEEeccccccCCCccEEEEEEEecCchhHHHHHHH---
Confidence            68999999999999999999998843 334555554 577 8999999999999999999999  65410  23321   


Q ss_pred             hhhhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           77 AFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                      +        ....... .+.++..+ .++.+.++.. .++++++++.++++++.+.+.|++++++.. ..|.+|+|+|  
T Consensus       273 l--------~~~~~~~-~~~~~~~~-~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~--  338 (406)
T 1xi9_A          273 I--------DRLARIR-LCPNTPAQ-FAAIAGLTGP-MDYLKEYMKKLKERRDYIYKRLNEIPGIST-TKPQGAFYIF--  338 (406)
T ss_dssp             H--------HHHHHHT-CCSCSHHH-HHHHHHHHSC-CHHHHHHHHHHHHHHHHHHHHHHTSTTEEC-CCCCBSSEEC--
T ss_pred             H--------HHHHHhh-cCCCHHHH-HHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHhCCCCee-ecCCeeEEEE--
Confidence            1        2222222 33333333 4444445323 345888999999999999999998877764 6788999999  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                             +.++.. . +. +..++..++++++||.+.||+.|+.  .+++|++++.+++++++++++|.++++++.
T Consensus       339 -------~~~~~~-~-~~-~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~~~~~i~~~~~~l~~~l~~~~  404 (406)
T 1xi9_A          339 -------PKIEVG-P-WK-NDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKERL  404 (406)
T ss_dssp             -------CEECSC-S-CS-SHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHC-
T ss_pred             -------EecCcc-C-CC-CHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence                   555320 0 11 3556666666688999999999975  789999999889999999999999987753

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.92  E-value=4.3e-24  Score=185.18  Aligned_cols=190  Identities=22%  Similarity=0.420  Sum_probs=142.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++|+||+|+++.+++ .+.++..++. .++++++.|+||.++++|+|+||+++++  ++++.   +  
T Consensus       197 ~~l~~~~~~~~~~li~Dea~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~--~~~~~---l--  268 (389)
T 1o4s_A          197 EGLVRLAKKRNFYIISDEVYDSLVYTD-EFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSE--KVATA---V--  268 (389)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTSBCSS-CCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCH--HHHHH---H--
T ss_pred             HHHHHHHHHcCCEEEEEccccccccCC-CCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCH--HHHHH---H--
Confidence            368999999999999999999998876 3344554543 5789999999999999999999999976  34321   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                            .........+.++..+ .+....++..    +++.++.++++++.+.+.|+++ ++.. ..|++++|+|     
T Consensus       269 ------~~~~~~~~~~~~~~~~-~a~~~~l~~~----~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~-----  330 (389)
T 1o4s_A          269 ------SKIQSHTTSCINTVAQ-YAALKALEVD----NSYMVQTFKERKNFVVERLKKM-GVKF-VEPEGAFYLF-----  330 (389)
T ss_dssp             ------HHHHHHHTCSCCHHHH-HHHHHHTTCC----CHHHHHHHHHHHHHHHHHHHHT-TCCC-CCCSBSSEEE-----
T ss_pred             ------HHHhhhcccCCCHHHH-HHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHhc-CCee-ecCCcceEEE-----
Confidence                  2222222233333333 3334444433    6788899999999999999887 6654 5788999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                          ++++  .     +..++..++++++||.+.||+.|+..+++|++++.+++++++++++|.++++
T Consensus       331 ----~~~~--~-----~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~~~~~l~~~l~~l~~~l~  387 (389)
T 1o4s_A          331 ----FKVR--G-----DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLN  387 (389)
T ss_dssp             ----EECS--S-----CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred             ----EeCC--C-----CHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeCCHHHHHHHHHHHHHHHh
Confidence                5554  1     3556666666688999999999987789999999999999999999998874

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.92  E-value=2.4e-24  Score=195.14  Aligned_cols=208  Identities=16%  Similarity=0.225  Sum_probs=144.2

Q ss_pred             hHHHHH--HHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETT--KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~--~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|+++|  +++|++||+||+|+++.++   +.++.... .+++|++.||||.||+||+|+||+++++. .+++.  +.+.
T Consensus       269 ~l~~~a~~~~~~~~ii~De~y~~~~~~---~~s~~~~~-~~~~i~~~S~SK~~g~~GlRiG~~~~~~~-~l~~~--l~~~  341 (546)
T 2zy4_A          269 RVRNIVAEHRPDLMILTDDVYGTFADD---FQSLFAIC-PENTLLVYSFSKYFGATGWRLGVVAAHQQ-NVFDL--ALDK  341 (546)
T ss_dssp             HHHHHHHHTCTTCEEEEECTTGGGSTT---CCCHHHHC-GGGEEEEEESTTTTTCGGGCEEEEEEESS-CHHHH--HHHT
T ss_pred             HHHHHHHhccCCcEEEEeCcchhhccc---CcCHHHhC-CCCEEEEEeCccccCCCCcceEEEEECCH-HHHHH--HHhh
Confidence            588999  7899999999999998753   23343333 36899999999999999999999999873 24432  1100


Q ss_pred             hh----hhhHHhhh-----------------------hhhhhccCcchHH-H---HHHHHhhhcHHHHHHHHHHHHHHHH
Q 047983           80 HS----ISLNMRMD-----------------------DYLLLSESVYTTV-G---AVPQILEKTEEEFFSKITDILREAA  128 (233)
Q Consensus        80 ~~----~~~~~~~~-----------------------~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~~~~~~~~  128 (233)
                      ..    ..+...++                       .+.+.+.+.+.|. .   ++++++. ..+.+.+++++.+++|+
T Consensus       342 ~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~-~~~~~~~~~r~~~~~r~  420 (546)
T 2zy4_A          342 LQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMD-EADEYKHTLKQLIRRRE  420 (546)
T ss_dssp             SCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHH
Confidence            00    00000000                       1112233334443 2   1345543 23578899999999999


Q ss_pred             HHHHHHhhcCCCcccccCCCccEEEEEecCCCcccccccc-c---cc--------CCCCChHHHHHHHHhccCEEEECCc
Q 047983          129 DICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNY-S---LL--------EGINSDTEFALKLAKEESIIVLPGI  196 (233)
Q Consensus       129 ~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~---~~--------~~~~~~~~~~~~ll~~~gi~v~pg~  196 (233)
                      +.+.+.|. + .+.. .+|++|||+|         ++++. .   ..        .+. ++.+++.++++++||.+.||+
T Consensus       421 ~~l~~~L~-~-~~~~-~~~~~~~~l~---------~~l~~~~~~~~~~~~~~wl~~~~-~~~~~l~~ll~~~gV~v~pG~  487 (546)
T 2zy4_A          421 TTLYRELG-M-PPLR-DENAVDYYTL---------IDLQDVTAKLYGEAFSEWAVKQS-STGDMLFRIADETGIVLLPGR  487 (546)
T ss_dssp             HHHHGGGT-S-SCCC-CTTBCCSEEE---------EEHHHHHHHHHCHHHHHHHHHHC-CHHHHHHHHHHHHSCCCEESS
T ss_pred             HHHHHhcC-C-Cccc-CCCCeeEEEE---------EEHHHhhcccccHHHHHHhhccC-CHHHHHHHHHHHCCEEEeCcc
Confidence            99999996 4 3332 5789999999         55431 0   00        011 356778889999999999999


Q ss_pred             ccCC-CCcEEEEeec-CHHHHHHHHHHHHHHHHHHh
Q 047983          197 TVGL-KDWLRITFAV-EPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       197 ~f~~-~~~~Rl~~~~-~~~~l~~~~~~l~~~l~~~~  230 (233)
                      .|+. ++++|++++. +++++++++++|+++++++.
T Consensus       488 ~F~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~  523 (546)
T 2zy4_A          488 GFGSNRPSGRASLANLNEYEYAAIGRALRKMADELY  523 (546)
T ss_dssp             CTTCSSCEEEEESSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHH
Confidence            9986 5789999997 89999999999999998875

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.91  E-value=1.1e-23  Score=183.64  Aligned_cols=198  Identities=17%  Similarity=0.238  Sum_probs=139.7

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++||++||+||+|..+..+ ....... .+..++++++.|+|| ++++|+|+||+++++  ++++.   +    
T Consensus       204 ~l~~~a~~~~~~li~De~~~~~~~~-~~~~~~~-~~~~~~~i~~~s~sK-~~~~G~r~G~~~~~~--~~~~~---~----  271 (417)
T 3g7q_A          204 KLDRLANQHNIPLVIDNAYGVPFPG-IIFSEAR-PLWNPNIILCMSLSK-LGLPGSRCGIIIAND--KTITA---I----  271 (417)
T ss_dssp             HHHHHHHHTTCCEEEECTTCTTTTC-CBCSCCC-CCCCTTEEEEEESGG-GTCTTSCCEEEECCH--HHHHH---H----
T ss_pred             HHHHHHHHcCCEEEEeCCCcccccc-ccccccc-cCCCCCEEEEEechh-ccCCCcceEEEEeCH--HHHHH---H----
Confidence            6899999999999999999874321 1111111 133578999999999 599999999999976  34421   1    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHH-HHHHHHHHHHHHHHHhhc-CCC--cccccCCCccEEEEEe
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSK-ITDILREAADICCDRLKE-IPC--ITCPKKPEGSMFVMYC  156 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-~~~~~~~~~~~l~~~L~~-~~~--~~~~~~~~~g~~~~~~  156 (233)
                          .........+.++..+ .++..+++.. ..++..+ +++.++++++.+.+.|++ +++  +. +..|++|+|+|  
T Consensus       272 ----~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~g~~~~--  343 (417)
T 3g7q_A          272 ----ANMNGIISLAPGGMGP-AMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCL-IHKPEGAIFLW--  343 (417)
T ss_dssp             ----HHHHHHHCCCCCSHHH-HHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCE-EECCCBSSEEE--
T ss_pred             ----HHhhcceeeCCCcHHH-HHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCce-eeCCCcceEEE--
Confidence                2223333333333444 4444444443 4455555 788999999999999977 664  44 35789999999  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC---------CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL---------KDWLRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---------~~~~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                             +.++..   +. +..++ .+.|.++||.+.||+.|+.         .+++|++++.+++++++++++|.++++
T Consensus       344 -------~~~~~~---~~-~~~~l-~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l~  411 (417)
T 3g7q_A          344 -------LWFKDL---PI-TTELL-YQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILAEEIE  411 (417)
T ss_dssp             -------EECTTC---SS-CHHHH-HHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCSCHHHHHHHHHHHHHHHH
T ss_pred             -------EEcCCC---CC-CHHHH-HHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence                   555421   11 24444 4455788999999999964         469999999999999999999999998


Q ss_pred             HHhh
Q 047983          228 RHAK  231 (233)
Q Consensus       228 ~~~~  231 (233)
                      +..+
T Consensus       412 ~~~~  415 (417)
T 3g7q_A          412 RAWR  415 (417)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8754

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.91  E-value=2.8e-24  Score=185.52  Aligned_cols=193  Identities=23%  Similarity=0.426  Sum_probs=142.4

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++||+++|+||+|+++.+ +..+.++..+ ..++++++.|+||.|+++|+|+||+++++  ++++.   +    
T Consensus       176 ~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~-~~~~~~~~~s~sK~~~~~G~r~G~~~~~~--~~~~~---~----  244 (381)
T 1v2d_A          176 AIARLARAHDLFLISDEVYDELYY-GERPRRLREF-APERTFTVGSAGKRLEATGYRVGWIVGPK--EFMPR---L----  244 (381)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHH-CTTTEEEEEEHHHHTTCGGGCCEEEECCT--TTHHH---H----
T ss_pred             HHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHh-cCCCEEEEeechhhcCCcccceEEEEeCH--HHHHH---H----
Confidence            689999999999999999999988 4433445444 45789999999999999999999999977  44431   1    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                          ........++.++..+ .++...++.. ..+++++.++.++++++++.+.|++. ++.. ..|.+|+|+|      
T Consensus       245 ----~~~~~~~~~~~~~~~~-~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~------  311 (381)
T 1v2d_A          245 ----AGMRQWTSFSAPTPLQ-AGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRV-YVPEGTYFLM------  311 (381)
T ss_dssp             ----HHHHHHHTSSCCHHHH-HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCE-ECCSBSSEEE------
T ss_pred             ----HHHHhhcccCCCcHHH-HHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCEe-cCCCcceEEE------
Confidence                2222223334333333 3444444322 25678899999999999999999886 5554 5778899999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----CCcEEEEeecCHHHHHHHHHHHHHHHHHHhh
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFAVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                         ++++  .   .  +   +.++++++||.+.||+.|+.    .+++|++++.+++++++++++|.+++++.++
T Consensus       312 ---~~~~--~---~--~---~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~l~~~r~  373 (381)
T 1v2d_A          312 ---AELP--G---W--D---AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVNSPRE  373 (381)
T ss_dssp             ---EECT--T---C--C---HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC-----
T ss_pred             ---EecC--h---H--h---HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhhccc
Confidence               5443  2   1  2   67778899999999999974    6799999999999999999999999877653

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.91  E-value=3.5e-24  Score=193.57  Aligned_cols=211  Identities=17%  Similarity=0.260  Sum_probs=148.0

Q ss_pred             hHHHHHH-HcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh-h
Q 047983            2 CIEETTK-KLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF-F   79 (233)
Q Consensus         2 ~i~~l~~-~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~-~   79 (233)
                      +|+++|+ +||++||+||+|.++.++.   .++.... .+++++++||||.||++|+|+||+++++. .++++  ++. +
T Consensus       268 ~l~~la~~~~~~~li~De~y~~~~~~~---~~~~~~~-~~~~i~~~S~SK~~g~~G~RiG~l~~~~~-~~~~~--li~~l  340 (533)
T 3f6t_A          268 AIKQAVEKNPKLMIISDEVYGAFVPNF---KSIYSVV-PYNTMLVYSYSKLFGCTGWRLGVIALNEK-NVFDD--NIAHL  340 (533)
T ss_dssp             HHHHHHHHCTTCEEEEECTTGGGSTTC---CCHHHHS-GGGEEEEEESHHHHTCGGGCEEEEEEESS-CHHHH--HHHTS
T ss_pred             HHHHHHHhCCCCEEEEcCCccccccCc---cCHhhcC-CCCEEEEecCcccCCCcccceEEEEECcH-HHHHH--HHHhc
Confidence            6889999 6899999999999988653   2333333 37899999999999999999999999873 22221  110 0


Q ss_pred             ------------hh--------------hhhHHhhhhhhhhccCcchHHH----HHHHHhh----hcHHHHHHHHHHHHH
Q 047983           80 ------------HS--------------ISLNMRMDDYLLLSESVYTTVG----AVPQILE----KTEEEFFSKITDILR  125 (233)
Q Consensus        80 ------------~~--------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~----~~~~~~~~~~~~~~~  125 (233)
                                  .+              ...........+.+.+.+.|.+    +++.+.+    ....++++++++.++
T Consensus       341 ~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~  420 (533)
T 3f6t_A          341 DKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVS  420 (533)
T ss_dssp             CHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHH
T ss_pred             chhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHH
Confidence                        00              0000112222233333344432    2334321    234578999999999


Q ss_pred             HHHHHHHHHhhcCCCcccccCCCccEEEEEecCCCccccccccc-c-cCC---------CCChHHHHHHHHhccCEEEEC
Q 047983          126 EAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYS-L-LEG---------INSDTEFALKLAKEESIIVLP  194 (233)
Q Consensus       126 ~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~-~~~---------~~~~~~~~~~ll~~~gi~v~p  194 (233)
                      ++++.+.+.|. + ++. +..|++|+|+|         +.++.- . ..+         ..++.+++.++++++||.+.|
T Consensus       421 ~r~~~l~~~L~-~-~~~-~~~~~~g~~~~---------~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~p  488 (533)
T 3f6t_A          421 ERYDQLHDAMQ-A-PKD-ETDTNTHYYSL---------IDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVD  488 (533)
T ss_dssp             HHHHHHHHHHT-C-CCC-CSTTBCCSEEE---------EEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCT
T ss_pred             HHHHHHHHhcC-C-Ccc-ccCCCceEEEE---------EehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeC
Confidence            99999999997 6 454 36899999999         544310 0 000         013678888999999999999


Q ss_pred             CcccCC-CCcEEEEeec-CHHHHHHHHHHHHHHHHHHhh
Q 047983          195 GITVGL-KDWLRITFAV-EPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       195 g~~f~~-~~~~Rl~~~~-~~~~l~~~~~~l~~~l~~~~~  231 (233)
                      |+.|+. .+++|+|++. +++++++++++|.++++++..
T Consensus       489 g~~f~~~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~~~  527 (533)
T 3f6t_A          489 GVGFGAKPGELRVSQANLPTEDYALIGKQVLELLKEYYE  527 (533)
T ss_dssp             TEEECSSTTEEEEESSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCCCCEEEEEEeeCCHHHHHHHHHHHHHHHHHHHH
Confidence            999987 6899999996 899999999999999988753

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.85  E-value=3.6e-26  Score=198.36  Aligned_cols=199  Identities=16%  Similarity=0.215  Sum_probs=147.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC--ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS--IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++|++||++||+||+|.++.+++..+.++..+..  .++++++.|+||.|+++|+|+||++++++ .+++.  +  
T Consensus       187 ~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~-~~~~~--~--  261 (392)
T 3b1d_A          187 EQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENP-TLCAQ--F--  261 (392)
Confidence            46899999999999999999999988765556666644  67899999999999999999999999762 24432  1  


Q ss_pred             hhhhhhHHhhhhhhhh-ccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCCccEEEEEe
Q 047983           79 FHSISLNMRMDDYLLL-SESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE-IPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~  156 (233)
                             .......++ +.++..+.++.+. ++ ...+++++.++.++++++.+.+.|++ ++++.. ..|.+++++|  
T Consensus       262 -------~~~~~~~~~~~~~~~~~~a~~~~-l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~--  329 (392)
T 3b1d_A          262 -------KHQQLVNNHHEVSSLGYIATETA-YR-YGKPWLVALKAVLEENIQFAVEYFAQEAPRLKV-MKPQGTYLIW--  329 (392)
Confidence                   222222211 2233333233333 33 23568899999999999999999988 777764 7899999999  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                             ++++..   +. +..++..++++++||.+.||+.|+.  .+++|++++.+++++++++++|.++++
T Consensus       330 -------i~~~~~---~~-~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~e~i~~~l~~l~~~l~  391 (392)
T 3b1d_A          330 -------LDFSDY---GL-TDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAAPKSLVEEICKRIVCCLP  391 (392)
Confidence                   555321   11 2445555555688999999999974  689999999888899999999998875

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.91  E-value=7.9e-24  Score=185.19  Aligned_cols=197  Identities=16%  Similarity=0.145  Sum_probs=144.4

Q ss_pred             hHHHHH-HHcCcEEEEccccCccccCC-C--cccccccc----CCccCEEEEccCccccCCCCceEEEEEecCCCccccc
Q 047983            2 CIEETT-KKLGIMVIADEVYGHLVFGN-T--HFVPMGVF----GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD   73 (233)
Q Consensus         2 ~i~~l~-~~~~~~lI~De~y~~~~~~~-~--~~~~~~~~----~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~   73 (233)
                      +|+++| ++||++||+||+|..+.+.+ .  .+.++..+    +..+++|+++|+||. +++|+|+||+++++  ++++.
T Consensus       197 ~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~--~~~~~  273 (423)
T 3ez1_A          197 RLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKI-TFAGAGLGFVASSE--DNIRW  273 (423)
T ss_dssp             HHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTT-SCSSSSCEEEEECH--HHHHH
T ss_pred             HHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhh-ccCCcceEEEEeCH--HHHHH
Confidence            688899 99999999999999766654 2  23344333    456899999999999 89999999999987  44421


Q ss_pred             cchhhhhhhhhHHhhhhhhhhccCcchHHHHHHHHhhh--c-HHHHHHHHHHHHHHHHHHHHHHhhc-CCC----ccccc
Q 047983           74 LGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEK--T-EEEFFSKITDILREAADICCDRLKE-IPC----ITCPK  145 (233)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~-~~~~~~~~~~~~~~~~~~l~~~L~~-~~~----~~~~~  145 (233)
                         +        .........+.+...+ .+...+++.  . ..+++++.++.++++++.+.+.|.+ ++.    +. +.
T Consensus       274 ---~--------~~~~~~~~~~~~~~~~-~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~-~~  340 (423)
T 3ez1_A          274 ---L--------SKYLGAQSIGPNKVEQ-ARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYAT-WT  340 (423)
T ss_dssp             ---H--------HHHHHHSCSCCCHHHH-HHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEE-EC
T ss_pred             ---H--------HHHHhhhccCCCHHHH-HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceE-Ee
Confidence               1        2223323333333333 444444444  2 4578899999999999998888865 433    43 36


Q ss_pred             CCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEEC-CcccCC-----CCcEEEEeec-CHHHHHHH
Q 047983          146 KPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLP-GITVGL-----KDWLRITFAV-EPSAFEIG  218 (233)
Q Consensus       146 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~-----~~~~Rl~~~~-~~~~l~~~  218 (233)
                      .|.+|+|+|         ++++.       .+.+.+.+.|+++||.+.| |+.|+.     .+++||+++. ++++++++
T Consensus       341 ~p~~g~~~~---------~~~~~-------~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~~~~~i~~~  404 (423)
T 3ez1_A          341 LPKGGYFIS---------LDTAE-------PVADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTA  404 (423)
T ss_dssp             CCSBSSCEE---------EEESS-------SCHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSSCHHHHHHH
T ss_pred             CCCccEEEE---------EECCC-------CcHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCCCHHHHHHH
Confidence            789999999         55542       1456677778899999999 777752     5899999996 89999999


Q ss_pred             HHHHHHHHHHHh
Q 047983          219 LGRMKAFYYRHA  230 (233)
Q Consensus       219 ~~~l~~~l~~~~  230 (233)
                      +++|.+++++..
T Consensus       405 ~~~l~~~l~~~~  416 (423)
T 3ez1_A          405 MQVVAACIRLAT  416 (423)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.91  E-value=1.2e-23  Score=184.52  Aligned_cols=193  Identities=15%  Similarity=0.173  Sum_probs=141.2

Q ss_pred             hHHHHHHH-----cCcEEEEccccCccccCCCcccccc-ccCC-ccC---EEEEccCccccCCCCceEEEEEe---cCCC
Q 047983            2 CIEETTKK-----LGIMVIADEVYGHLVFGNTHFVPMG-VFGS-IVP---VLTLGSISKRWIVPGWRLGWLVT---SDPN   68 (233)
Q Consensus         2 ~i~~l~~~-----~~~~lI~De~y~~~~~~~~~~~~~~-~~~~-~~~---~i~~~s~sK~~~~~G~R~G~~~~---~~~~   68 (233)
                      +|+++|++     ||+++|+||+|.++.+++..+.++. .++. .++   ++++.|+||.|+++|+|+||+++   ++  
T Consensus       213 ~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~--  290 (430)
T 2x5f_A          213 TIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQ--  290 (430)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCH--
T ss_pred             HHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCH--
Confidence            68999999     9999999999999998775444554 4533 567   99999999999999999999999   65  


Q ss_pred             ccccccchhhhhhhhhHHhhhhh----hhhccCcchHHHHHHHHhh-hc-HHHHHHHHHHHHHHHHHHHHHHhh----cC
Q 047983           69 GILQDLGVAFFHSISLNMRMDDY----LLLSESVYTTVGAVPQILE-KT-EEEFFSKITDILREAADICCDRLK----EI  138 (233)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~-~~-~~~~~~~~~~~~~~~~~~l~~~L~----~~  138 (233)
                      .+++.  +         ......    ...+.++..+ .++...++ .. ..+++++.++.++++++.+.+.|+    +.
T Consensus       291 ~~~~~--l---------~~~~~~~~~~~~~~~~~~~~-~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  358 (430)
T 2x5f_A          291 TTKEV--L---------EAKVKGLIRSNISSGPLPTQ-SAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHS  358 (430)
T ss_dssp             HHHHH--H---------HHHHHHHHHTTTSSCCHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT
T ss_pred             HHHHH--H---------HHHHhhhhhcccCCCChHHH-HHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            34421  1         111111    1223333333 45555554 33 334556699999999999999998    44


Q ss_pred             CCcccccCCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee-cCHHHHHH
Q 047983          139 PCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA-VEPSAFEI  217 (233)
Q Consensus       139 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~-~~~~~l~~  217 (233)
                       ++.. ..|++|+|+|         ++++ .    . +..++..++++++||.+.||    ..+++|++++ .+++++++
T Consensus       359 -g~~~-~~~~~g~~~~---------~~~~-~----~-~~~~~~~~l~~~~gi~v~~g----~~~~iRis~~~~~~e~i~~  417 (430)
T 2x5f_A          359 -HWQA-YDFNSGYFMA---------IKVH-D----V-DPEALRKHLIDKYSIGVIAL----NATDIRIAFSCVEKDDIPH  417 (430)
T ss_dssp             -TEEE-CCCCBSSEEE---------EEES-S----S-CHHHHHHHHHHHHCEECEEC----SSSEEEEEGGGSCGGGHHH
T ss_pred             -Ccee-eCCCceEEEE---------eCCC-C----C-CHHHHHHHHHHhCCEEEecC----CCCeEEEEEecCCHHHHHH
Confidence             4553 6788999999         6654 1    1 35566666665589999998    3579999999 68899999


Q ss_pred             HHHHHHHHHHHH
Q 047983          218 GLGRMKAFYYRH  229 (233)
Q Consensus       218 ~~~~l~~~l~~~  229 (233)
                      ++++|.+++++.
T Consensus       418 ~~~~l~~~l~~~  429 (430)
T 2x5f_A          418 VFDSIAKAIDDL  429 (430)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999998764

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.90  E-value=1e-22  Score=177.60  Aligned_cols=194  Identities=21%  Similarity=0.310  Sum_probs=143.8

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccC-CccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||++||+||+|+++.+++ .+.++  +. ..++++++.|+||.++++|+|+||++++++ +++         
T Consensus       198 ~i~~~~~~~~~~li~Dea~~~~~~~~-~~~~~--~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~l~---------  264 (409)
T 2gb3_A          198 YLVEIAERHGLFLIVDEVYSEIVFRG-EFASA--LSIESDKVVVIDSVSKKFSACGARVGCLITRNE-ELI---------  264 (409)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTCBCSS-CCCCG--GGSCCTTEEEEEESTTTTTCGGGCCEEEECSCH-HHH---------
T ss_pred             HHHHHHHHcCCEEEEECcccccccCC-CCCCc--cccCCCCEEEEecchhccCCccceEEEEEECcH-HHH---------
Confidence            68999999999999999999998876 33333  22 236789999999999999999999999862 233         


Q ss_pred             hhhhHHhhhhhhh-hccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           81 SISLNMRMDDYLL-LSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                           ..+..... .. +++... .++...++. ..++++++++.++++++.+.+.|+++ ++..+..|.+|+|+|    
T Consensus       265 -----~~l~~~~~~~~-~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~----  332 (409)
T 2gb3_A          265 -----SHAMKLAQGRL-APPLLEQIGSVGLLNL-DDSFFDFVRETYRERVETVLKKLEEH-GLKRFTKPSGAFYIT----  332 (409)
T ss_dssp             -----HHHHHHHHHSC-CCCHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCSBSSEEE----
T ss_pred             -----HHHHHHHhccC-CCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCeeEEEE----
Confidence                 22222211 11 233333 444444533 36688999999999999999999887 554325688899999    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhc-----cCEEEECCcccCC-----CCcEEEEeecCHHHHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKE-----ESIIVLPGITVGL-----KDWLRITFAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~gi~v~pg~~f~~-----~~~~Rl~~~~~~~~l~~~~~~l~~~l~~  228 (233)
                           ++++     +. +..++..+++++     +||.+.||+.|+.     .+++|++++.+++++++++++|.+++++
T Consensus       333 -----~~~~-----~~-~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~l~~  401 (409)
T 2gb3_A          333 -----AELP-----VE-DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKM  401 (409)
T ss_dssp             -----EECS-----SS-CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             -----EEeC-----CC-CHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence                 5554     11 355666666655     5999999999964     5899999999999999999999999988


Q ss_pred             Hhh
Q 047983          229 HAK  231 (233)
Q Consensus       229 ~~~  231 (233)
                      +.+
T Consensus       402 ~~~  404 (409)
T 2gb3_A          402 FCS  404 (409)
T ss_dssp             HHC
T ss_pred             hhh
Confidence            754

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.90  E-value=3.2e-24  Score=186.62  Aligned_cols=180  Identities=18%  Similarity=0.190  Sum_probs=128.0

Q ss_pred             cC--cEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEe-cCCCccccccchhhhhhhhhHH
Q 047983           10 LG--IMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVT-SDPNGILQDLGVAFFHSISLNM   86 (233)
Q Consensus        10 ~~--~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~-~~~~~~~~~~~~~~~~~~~~~~   86 (233)
                      |+  ++||+||+|.+    + ...++..  ..+++|+++||||.|++||+|+||+++ ++  .+++.   +        .
T Consensus       182 ~~~~~~ii~De~y~~----~-~~~~l~~--~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~--~l~~~---l--------~  241 (391)
T 3bwn_A          182 DDDEAKVIHDFAYYW----P-HYTPITR--RQDHDIMLFTFSKITGHAGSRIGWALVKDK--EVAKK---M--------V  241 (391)
T ss_dssp             --CCCEEEEECTTCS----T-TTSCCCC--CBCCSEEEEEHHHHHSCGGGCEEEEEECCH--HHHHH---H--------H
T ss_pred             hcCCCEEEEeCCCCC----C-CCCcccc--CCCCeEEEEechhhcCCCccceEEEEecCH--HHHHH---H--------H
Confidence            55  99999999984    2 2223332  457899999999999999999999998 54  34421   1        2


Q ss_pred             hhhhhhhhccCcchHHHHHHHHhhhcH---------HHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-----------
Q 047983           87 RMDDYLLLSESVYTTVGAVPQILEKTE---------EEFFSKITDILREAADICCDRLKEIPCITCPKK-----------  146 (233)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-----------  146 (233)
                      ..+.....+.+...| .++...++...         +++++++++.++++++.+.+.|++++++.. ..           
T Consensus       242 ~~~~~~~~~~~~~~q-~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~p~~~~~~f~~~  319 (391)
T 3bwn_A          242 EYIIVNSIGVSKESQ-VRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTL-PKYPEAFCNYFGK  319 (391)
T ss_dssp             HHHHHHHSSCCHHHH-HHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEEC-CCCCCEEETTTTE
T ss_pred             HHhcccccCCCHHHH-HHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-ccCCccccccccc
Confidence            333333344444444 44444454432         468999999999999999999998765543 33           


Q ss_pred             --CCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-CCcEEEEeecCHHHHHHHHHHHH
Q 047983          147 --PEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-KDWLRITFAVEPSAFEIGLGRMK  223 (233)
Q Consensus       147 --~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~Rl~~~~~~~~l~~~~~~l~  223 (233)
                        |.+|+|+|         ++++  .       .+.+.++|+++||.+.||+.|+. .+++|+|++.+++++++++++|.
T Consensus       320 ~~~~~g~~~~---------~~~~--~-------~~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~~~~e~i~~~~~~L~  381 (391)
T 3bwn_A          320 SLESYPAFAW---------LGTK--E-------ETDLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLA  381 (391)
T ss_dssp             EECCCCSEEE---------EEES--S-------SCCHHHHHHHTTEECEEGGGGTCCTTEEEEESCSCHHHHHHHHHHHH
T ss_pred             cCCCcceEEE---------ecCC--c-------HHHHHHHHHHCCEEEccCCCCCCCCCEEEEEecCCHHHHHHHHHHHH
Confidence              34566999         5553  1       23566778899999999999986 78999999998999999999999


Q ss_pred             HHHHHH
Q 047983          224 AFYYRH  229 (233)
Q Consensus       224 ~~l~~~  229 (233)
                      +++++.
T Consensus       382 ~~~~~~  387 (391)
T 3bwn_A          382 NMKLIK  387 (391)
T ss_dssp             SCC---
T ss_pred             HHHHhh
Confidence            887654

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.90  E-value=3.7e-23  Score=180.69  Aligned_cols=191  Identities=14%  Similarity=0.127  Sum_probs=135.7

Q ss_pred             hHHHHHH------HcCcEEEEccccCccccCCCccccccc-cC-CccC--EEEEccCccccCCCCceEEEEEe---cCCC
Q 047983            2 CIEETTK------KLGIMVIADEVYGHLVFGNTHFVPMGV-FG-SIVP--VLTLGSISKRWIVPGWRLGWLVT---SDPN   68 (233)
Q Consensus         2 ~i~~l~~------~~~~~lI~De~y~~~~~~~~~~~~~~~-~~-~~~~--~i~~~s~sK~~~~~G~R~G~~~~---~~~~   68 (233)
                      +|+++|+      +||++||+||+|.++.+++....++.. .. ..++  +|+++|+||.|+++|+|+||+++   ++  
T Consensus       204 ~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~--  281 (418)
T 3rq1_A          204 SILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDE--  281 (418)
T ss_dssp             HHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSH--
T ss_pred             HHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCH--
Confidence            5777887      899999999999999877643333322 11 2234  68999999999999999999998   54  


Q ss_pred             ccccccchhhhhhhhhHHhhhhhhh--hccCcchHH-HHHHHHhhhc-----HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047983           69 GILQDLGVAFFHSISLNMRMDDYLL--LSESVYTTV-GAVPQILEKT-----EEEFFSKITDILREAADICCDRLKEIPC  140 (233)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~  140 (233)
                      ++++.   +        ........  ...+++... .++..+++..     ..++.+++++.++++++.+.+.|+++ +
T Consensus       282 ~~~~~---~--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  349 (418)
T 3rq1_A          282 EIADE---F--------FEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV-G  349 (418)
T ss_dssp             HHHHH---H--------HHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred             HHHHH---H--------HHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C
Confidence            34431   1        22222211  111233333 4445555443     23455678899999999999999887 5


Q ss_pred             cccccCCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHH
Q 047983          141 ITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGL  219 (233)
Q Consensus       141 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~  219 (233)
                      +.. ..|++++|+|         +.++        +..++. +.|.++||.+.||.     +++|+|++. +++++++++
T Consensus       350 ~~~-~~~~~~~~~~---------~~~~--------~~~~~~-~~l~~~gi~v~~g~-----~~iRis~~~~~~~~i~~~~  405 (418)
T 3rq1_A          350 LPM-LPYRGGFFIT---------IPTD--------SANAIC-EELKKEHIYVIALA-----NGIRIAACGIPKCQMTGLA  405 (418)
T ss_dssp             CCC-CCCCSSSEEE---------EECT--------THHHHH-HHHHHTTEECEECS-----SEEEEEGGGSCHHHHTTHH
T ss_pred             CCC-CCCCceEEEE---------cCCC--------CHHHHH-HHHHhCCEEEecCC-----CCeEEEEecCCHHHHHHHH
Confidence            654 6899999999         4332        244554 56788999999984     789999985 999999999


Q ss_pred             HHHHHHHHHHh
Q 047983          220 GRMKAFYYRHA  230 (233)
Q Consensus       220 ~~l~~~l~~~~  230 (233)
                      ++|.+++++..
T Consensus       406 ~~l~~~l~~~~  416 (418)
T 3rq1_A          406 EKIYNAMKSLG  416 (418)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.90  E-value=6.4e-23  Score=179.92  Aligned_cols=205  Identities=16%  Similarity=0.078  Sum_probs=140.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccc----cc-cccCC-ccCEEEEccCccccCCCCceEEEEEecCCCcccc-cc
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFV----PM-GVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQ-DL   74 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~----~~-~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~-~~   74 (233)
                      +|+++|++||++||+||+|+++.+++....    ++ ..+.. .++++++.|+||.++++|+|+||+++++  ++++ .+
T Consensus       206 ~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--~~~~~~~  283 (437)
T 3g0t_A          206 IIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISG--KLYEREY  283 (437)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECH--HHHHCBC
T ss_pred             HHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECH--HHhhhhh
Confidence            689999999999999999999988743211    11 34433 6889999999999999999999999987  4442 10


Q ss_pred             chhhhhhhhh------HHhhhhhhhhccCcchHHHHHHHHhhhcHHHH---HHHHHHHHHHHHHHHHHHhhcCCCccccc
Q 047983           75 GVAFFHSISL------NMRMDDYLLLSESVYTTVGAVPQILEKTEEEF---FSKITDILREAADICCDRLKEIPCITCPK  145 (233)
Q Consensus        75 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  145 (233)
                      ......-..+      ..........+.++..+ .++...++. ...+   +++.++.++++++.+.+.|+++ ++.. .
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~  359 (437)
T 3g0t_A          284 PDLEESFGRLRFGEALSSSALYALSSGATHSAQ-WGMAAMLKA-CNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNI-V  359 (437)
T ss_dssp             GGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHH-HHHHHHHHH-HHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEE-S
T ss_pred             hcccccccccchhHHHHHHHHhhhcCCCCHHHH-HHHHHHHhC-cHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEE-e
Confidence            0000000000      02222222233333333 444444432 2223   8899999999999999999988 6654 4


Q ss_pred             -------CCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCC--CcEEEEeec-CHHHH
Q 047983          146 -------KPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLK--DWLRITFAV-EPSAF  215 (233)
Q Consensus       146 -------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~--~~~Rl~~~~-~~~~l  215 (233)
                             ++.+++|+|         +.++     +. +..++..+ |.++||.+.||..|+..  +++|+|++. +++++
T Consensus       360 ~~~~~~~~~~~~~~~~---------~~~~-----~~-~~~~l~~~-L~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i  423 (437)
T 3g0t_A          360 YDKDGNEPLADGFYFT---------VGYK-----GM-DSSKLIEK-FVRYGMCAITLKTTGSKRNEAMRICTSLLPESQF  423 (437)
T ss_dssp             SCEETTEECCSSSEEE---------EEET-----TC-CHHHHHHH-HHHTTEECEESTTTTCCCTTCEEEECSSSCGGGH
T ss_pred             ccccCCCCCceeEEEE---------EecC-----CC-CHHHHHHH-HHHcCeEEeeccccCCCCCCEEEEEEecCCHHHH
Confidence                   348999999         6554     11 34455554 55679999999988763  899999997 89999


Q ss_pred             HHHHHHHHHHHHH
Q 047983          216 EIGLGRMKAFYYR  228 (233)
Q Consensus       216 ~~~~~~l~~~l~~  228 (233)
                      ++++++|.+++++
T Consensus       424 ~~~~~~l~~~~~~  436 (437)
T 3g0t_A          424 PDLEKRLQMLNAE  436 (437)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988754

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.89  E-value=3e-22  Score=176.22  Aligned_cols=200  Identities=17%  Similarity=0.251  Sum_probs=139.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++||++||+||+|+.+..+ ....... ....++++++.|+||. +++|+|+||+++++  .+++.   +    
T Consensus       230 ~i~~~a~~~~~~li~De~~~~~~~~-~~~~~~~-~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~--~l~~~---~----  297 (444)
T 3if2_A          230 HLAEIAKRYDIPLIIDNAYGMPFPN-IIYSDAH-LNWDNNTILCFSLSKI-GLPGMRTGIIVADA--KVIEA---V----  297 (444)
T ss_dssp             HHHHHHHHTTCCEEEECTTCTTTTC-CBCSCCC-CCCCTTEEEEEESTTT-TCGGGCCEEEECCH--HHHHH---H----
T ss_pred             HHHHHHHHCCCEEEEECCCCCcccc-ccccccc-ccCCCCEEEEechhhc-cCCCCceEEEEECH--HHHHH---H----
Confidence            6889999999999999999864321 1111111 1335789999999997 99999999999977  34421   1    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHH-HHHHHHHHHHHHHHHhhc-CCCcc-cccCCCccEEEEEec
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSK-ITDILREAADICCDRLKE-IPCIT-CPKKPEGSMFVMYCG  157 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-~~~~~~~~~~~l~~~L~~-~~~~~-~~~~~~~g~~~~~~~  157 (233)
                          ........++.++..+ .++..+++.. ..++..+ +++.++++++.+.+.|++ ++++. .+..|.+|+|+|   
T Consensus       298 ----~~~~~~~~~~~~~~~~-~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~---  369 (444)
T 3if2_A          298 ----SAMNAVVNLAPTRFGA-AIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLW---  369 (444)
T ss_dssp             ----HHHHHHHHSSCCCHHH-HHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEE---
T ss_pred             ----HHHHHhccCCCChHHH-HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEE---
Confidence                2233333344444444 4444444443 3445555 788999999999999877 65431 135688999999   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----------CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----------KDWLRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----------~~~~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                            +.++..   +. +..++ ...|.++||.+.||+.|..          .+++|++++.+++++++++++|.++++
T Consensus       370 ------~~~~~~---~~-~~~~l-~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~  438 (444)
T 3if2_A          370 ------LWFKDL---PI-STLDL-YERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVVR  438 (444)
T ss_dssp             ------EEETTC---SS-CHHHH-HHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHHHHHHH
T ss_pred             ------EEcCCC---CC-CHHHH-HHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence                  655431   11 24444 4556788999999999853          268999999999999999999999998


Q ss_pred             HHhhc
Q 047983          228 RHAKK  232 (233)
Q Consensus       228 ~~~~~  232 (233)
                      +..++
T Consensus       439 ~~~~~  443 (444)
T 3if2_A          439 ELYDN  443 (444)
T ss_dssp             HHHTC
T ss_pred             HHHcc
Confidence            87654

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.89  E-value=7.3e-23  Score=179.74  Aligned_cols=193  Identities=15%  Similarity=0.015  Sum_probs=135.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccc--c-ccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPM--G-VFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~--~-~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++|+++|+++++++|+||+|.+|.+++....+.  . ..+..++++++.||||.|+++|||+||++++..  ..+.+.-+
T Consensus       213 ~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~--~~~~~~~~  290 (420)
T 4h51_A          213 NEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLK--DKTKRADV  290 (420)
T ss_dssp             HHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECS--CHHHHHHH
T ss_pred             HHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEeccc--CHHHHHHH
Confidence            378999999999999999999999886432221  1 224557899999999999999999999999873  33210000


Q ss_pred             hhhhhhhHHhhhhhhh-hccCcchHH-HHHHHHhhhc-----HHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCC
Q 047983           78 FFHSISLNMRMDDYLL-LSESVYTTV-GAVPQILEKT-----EEEFFSKITDILREAADICCDRLKEIP---CITCPKKP  147 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~  147 (233)
                        .     ..+..... ...+++... .+++.++.+.     +.++++.++++++++|+.+.+.|++++   .|. +..+
T Consensus       291 --~-----~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~-~i~~  362 (420)
T 4h51_A          291 --K-----SVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWE-HVIN  362 (420)
T ss_dssp             --H-----HHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCT-HHHH
T ss_pred             --H-----HHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-eecC
Confidence              0     11111111 222334443 5555555442     356788899999999999999998853   233 2567


Q ss_pred             CccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHHHHHH
Q 047983          148 EGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRMKAFY  226 (233)
Q Consensus       148 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l~~~l  226 (233)
                      ++|+|.|           +++        +.+.+ ++|+++||.++|++        |||++. ++++++.+.++|.+++
T Consensus       363 q~GmF~~-----------~gl--------s~e~v-~~L~e~~Vy~~~~g--------Ris~Agl~~~ni~~~a~aI~~vv  414 (420)
T 4h51_A          363 QIGMFSF-----------LGL--------SKAQC-EYCQNHNIFITVSG--------RANMAGLTHETALMLAQTINDAV  414 (420)
T ss_dssp             CCSSEEE-----------CCC--------CHHHH-HHHHHTTEECCTTC--------EEEGGGCCHHHHHHHHHHHHHHH
T ss_pred             CCceEEe-----------cCc--------CHHHH-HHHHhCCEEEcCCC--------EEEeccCCHHHHHHHHHHHHHHH
Confidence            8899999           654        33444 46788999999864        999997 9999999999999999


Q ss_pred             HHHhh
Q 047983          227 YRHAK  231 (233)
Q Consensus       227 ~~~~~  231 (233)
                      ++..+
T Consensus       415 r~i~r  419 (420)
T 4h51_A          415 RNVNR  419 (420)
T ss_dssp             C----
T ss_pred             HHhhc
Confidence            87654

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.89  E-value=3.6e-22  Score=171.31  Aligned_cols=181  Identities=17%  Similarity=0.229  Sum_probs=128.4

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcccccccc-CCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|+ +|+++|+||+|.++..+    .++..+ +..++++++.|+||.|+++|+|+||+++++  +++         
T Consensus       170 ~l~~~~~-~~~~li~De~~~~~~~~----~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~--~~~---------  233 (356)
T 1fg7_A          170 TLLELTR-GKAIVVADEAYIEFCPQ----ASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANE--EVI---------  233 (356)
T ss_dssp             HHHHHHT-TTCEEEEECTTGGGSGG----GCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECH--HHH---------
T ss_pred             HHHHhCC-CCCEEEEEccchhhcCC----CcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCH--HHH---------
Confidence            4667777 99999999999997621    122222 455789999999999999999999999976  333         


Q ss_pred             hhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..+..... ++.++..+ .+..+.++....+++++.++.++++++.+.+.|++++++.. ..|.+|+|+|     
T Consensus       234 -----~~l~~~~~~~~~~~~~~-~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~-----  301 (356)
T 1fg7_A          234 -----NLLMKVIAPYPLSTPVA-DIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQ-VFDSETNYIL-----  301 (356)
T ss_dssp             -----HHHHHHSCSSCSCHHHH-HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEE-ECCCSSSEEE-----
T ss_pred             -----HHHHHhcCCCCCCHHHH-HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceE-ECCCCCeEEE-----
Confidence                 33332211 23333333 33444444332245899999999999999999998865332 3566888999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEEC-CcccCCCCcEEEEeecCHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLP-GITVGLKDWLRITFAVEPSAFEIGLGRMKA  224 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~  224 (233)
                          ++++        +..++..+ |.++||.+.| |+.|+..+++|++++. +++++++++.|++
T Consensus       302 ----~~~~--------~~~~l~~~-L~~~gI~v~~~g~~~~~~~~iRis~~~-~~e~~~~~~~l~~  353 (356)
T 1fg7_A          302 ----ARFK--------ASSAVFKS-LWDQGIILRDQNKQPSLSGCLRITVGT-REESQRVIDALRA  353 (356)
T ss_dssp             ----EEET--------THHHHHHH-HHHTTEECEECTTSTTCTTEEEEECCC-HHHHHHHHHHHHT
T ss_pred             ----EECC--------CHHHHHHH-HHHCCEEEEECCCCCCCCCeEEEEeCC-HHHHHHHHHHHHh
Confidence                5553        24555555 4788999999 8888877899999984 6677888877764

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.89  E-value=6.5e-22  Score=169.46  Aligned_cols=184  Identities=12%  Similarity=0.148  Sum_probs=133.6

Q ss_pred             hHHHHHHHc--CcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKL--GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~--~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++|+.+  |+++|+||+|+++.+ +.........+..++++++.|+||.++++|+|+||+++++  +++        
T Consensus       176 ~l~~l~~~~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~--~~~--------  244 (363)
T 3ffh_A          176 DIQAFLDRVPSDVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADK--EII--------  244 (363)
T ss_dssp             HHHHHHTTSCTTSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECH--HHH--------
T ss_pred             HHHHHHHhCCCCcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCH--HHH--------
Confidence            566677766  999999999999887 4333344444567899999999999999999999999976  333        


Q ss_pred             hhhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                            ..+..... ..+.+... .+....++  ..+++++.++.++++++.+.+.|+++.++.. .++ .|.|+|    
T Consensus       245 ------~~l~~~~~-~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~-~~~-~~~~~~----  309 (363)
T 3ffh_A          245 ------RQLNIVRP-PFNTTSIGQKLAIEAIK--DQAFIGECRTSNANGIKQYEAFAKRFEKVKL-YPA-NGNFVL----  309 (363)
T ss_dssp             ------HHHHHTCC-SCCCBHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHHCTTCEE-CCC-CSSEEE----
T ss_pred             ------HHHHHhCC-CCCCCHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHhhCCCceE-CCC-CCeEEE----
Confidence                  33332222 22233333 44444443  2378899999999999999999998556654 444 567789    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAF  225 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~  225 (233)
                           ++++.       +..++. +.|.++||.+.||+.|+..+++|++++ ++++++++++.|+++
T Consensus       310 -----~~~~~-------~~~~~~-~~l~~~gi~v~~g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~  362 (363)
T 3ffh_A          310 -----IDLGI-------EAGTIF-SYLEKNGYITRSGAALGFPTAVRITIG-KEEDNSAVIALLEKL  362 (363)
T ss_dssp             -----EECSS-------CHHHHH-HHHHHTTEECEETTTTTCTTEEEEECC-CHHHHHHHHHHHHHH
T ss_pred             -----EECCC-------CHHHHH-HHHHHCCeEEEeCccCCCCCeEEEECC-CHHHHHHHHHHHHHh
Confidence                 55431       244444 445577999999999988899999998 777889999888765

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.88  E-value=4.5e-22  Score=170.75  Aligned_cols=188  Identities=20%  Similarity=0.276  Sum_probs=131.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEE-ecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV-TSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~-~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||+++|+||+|.++.+++...  +..++..++++++.|+||.++++|+|+||++ +++  +++         
T Consensus       170 ~i~~~~~~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~--~~~---------  236 (364)
T 1lc5_A          170 AIADRCKSLNINLILDEAFIDFIPHETGF--IPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDD--AAM---------  236 (364)
T ss_dssp             HHHHHHHHHTCEEEEECTTGGGSTTCCCS--GGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCH--HHH---------
T ss_pred             HHHHHhhhcCcEEEEECcChhhccCccch--hhHhccCCCEEEEEECchhhcCCccceEEEEECCH--HHH---------
Confidence            68999999999999999999988763222  2223455789999999999999999999999 766  333         


Q ss_pred             hhhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..+.... .++.++..+ .+..+.++.  .+++++.++.++++++.+.+.|++++++.. .+ .+|.|+|     
T Consensus       237 -----~~l~~~~~~~~~~~~~~-~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~-~~g~~~~-----  301 (364)
T 1lc5_A          237 -----ARMRRQQMPWSVNALAA-LAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLTV-YP-GRANYLL-----  301 (364)
T ss_dssp             -----HHHHHHSCTTCSCHHHH-HHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEEE-CC-CSSSEEE-----
T ss_pred             -----HHHHHhCCCCCCCHHHH-HHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHhcCCCCEE-CC-CCCeEEE-----
Confidence                 3333221 233333322 444455543  468899999999999999999998877764 44 4566778     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                          ++++.       +..++... |.++||.+.||+.|+.  .+++|++++. .++++++++.|.+++++.+
T Consensus       302 ----~~~~~-------~~~~l~~~-l~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~~~l~~~l~~~~~~~~  361 (364)
T 1lc5_A          302 ----LRCER-------EDIDLQRR-LLTQRILIRSCANYPGLDSRYYRVAIRS-AAQNERLLAALRNVLTGIA  361 (364)
T ss_dssp             ----EEESC-------TTCCHHHH-HHTTTEECEECTTSTTCCTTEEEEECCC-HHHHHHHHHHHHHHC----
T ss_pred             ----EECCC-------cHHHHHHH-HHHCCcEEeeCcccCCCCCCEEEEEeCC-HHHHHHHHHHHHHHhhccc
Confidence                54431       12234444 4567999999999864  5899999885 5566777777777776654

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.88  E-value=1.2e-22  Score=177.80  Aligned_cols=187  Identities=17%  Similarity=0.148  Sum_probs=135.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCC-cccccccc-CCccCEEEEccCccccCCCCceEEEEEecC-CCccccccchhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNT-HFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGWLVTSD-PNGILQDLGVAF   78 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~-~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~-~~~~~~~~~~~~   78 (233)
                      +|+++|++||+++|+||+|.++.+++. ...++..+ +..+++|+++|+||.|+++|+|+||+++.. ...+++  .+. 
T Consensus       219 ~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~--~~~-  295 (420)
T 4f4e_A          219 QVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAA--RVL-  295 (420)
T ss_dssp             HHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHH--HHH-
T ss_pred             HHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHH--HHH-
Confidence            689999999999999999999998753 23344433 346789999999999999999999987532 112222  112 


Q ss_pred             hhhhhhHHhhhhhhh-hccCcchHH-HHHHHHhhhc-----HHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccccCCC
Q 047983           79 FHSISLNMRMDDYLL-LSESVYTTV-GAVPQILEKT-----EEEFFSKITDILREAADICCDRLKEI---PCITCPKKPE  148 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~  148 (233)
                             ..+..... ...+++... .+++.++...     .+++++++++.++++++.+.+.|+++   +++.. ..|+
T Consensus       296 -------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~  367 (420)
T 4f4e_A          296 -------SQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSF-INAQ  367 (420)
T ss_dssp             -------HHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTH-HHHS
T ss_pred             -------HHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcee-ECCC
Confidence                   22322211 122233333 4444444433     25788999999999999999999886   35553 6788


Q ss_pred             ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHHHHHH
Q 047983          149 GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRMKAFY  226 (233)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l~~~l  226 (233)
                      +|+|+|           +++        +.+.+.++++++||.+.|+.        |+|++. +++++++++++|.+++
T Consensus       368 ~g~~~~-----------~~~--------~~~~~~~~l~~~gI~v~~~~--------Ris~~~~~~~~i~~~~~~l~~~l  419 (420)
T 4f4e_A          368 RGMFSY-----------SGL--------TSAQVDRLREEFGIYAVSTG--------RICVAALNTRNLDVVANAIAAVL  419 (420)
T ss_dssp             CSSEEE-----------CCC--------CHHHHHHHHHHHCEECCTTS--------EEEGGGCCTTTHHHHHHHHHHHH
T ss_pred             ccEEEE-----------eCC--------CHHHHHHHHHhCCEEecCCC--------eEEEecCCHHHHHHHHHHHHHHh
Confidence            999999           443        34567888889999999852        999997 7778999999998876

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.88  E-value=1.1e-22  Score=176.19  Aligned_cols=186  Identities=14%  Similarity=0.059  Sum_probs=134.4

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCC-cccccccc-CCccCEEEEccCccccCCCCceEEEEEecCC-Cccccccchhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNT-HFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGWLVTSDP-NGILQDLGVAF   78 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~-~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~-~~~~~~~~~~~   78 (233)
                      +|+++|++||++||+||+|.++.+++. ...++..+ +..+++++++|+||.|+++|+|+||++++.. ..+++  .+. 
T Consensus       197 ~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~--~~~-  273 (397)
T 3fsl_A          197 AVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAG--RVL-  273 (397)
T ss_dssp             HHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHH--HHH-
T ss_pred             HHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEecCCHHHHH--HHH-
Confidence            789999999999999999999998742 33344433 4568899999999999999999999986431 12221  111 


Q ss_pred             hhhhhhHHhhhhhhh-hccCcchHH-HHHHHHhhhc-----HHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCC
Q 047983           79 FHSISLNMRMDDYLL-LSESVYTTV-GAVPQILEKT-----EEEFFSKITDILREAADICCDRLKEIP---CITCPKKPE  148 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~  148 (233)
                             ........ ...+++... .+.+.++...     ..++++++++.++++++.+.+.|++++   ++.. ..|+
T Consensus       274 -------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~  345 (397)
T 3fsl_A          274 -------GQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDY-LLNQ  345 (397)
T ss_dssp             -------HHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTH-HHHC
T ss_pred             -------HHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcee-ecCC
Confidence                   22222211 112223333 4444444432     257889999999999999999998853   4553 6788


Q ss_pred             ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHHHHH
Q 047983          149 GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRMKAF  225 (233)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l~~~  225 (233)
                      +|+|+|           ++.        +.+.+.++++++||.+.||+        |++++. +++++++++++|.++
T Consensus       346 ~~~~~~-----------~~~--------~~~~~~~~l~~~gi~v~~g~--------Ris~~~~~~~~i~~~~~~l~~~  396 (397)
T 3fsl_A          346 RGMFSY-----------TGL--------SAAQVDRLREEFGVYLIASG--------RMCVAGLNTANVQRVAKAFAAV  396 (397)
T ss_dssp             CSSEEE-----------CCC--------CHHHHHHHHHTTCEECCTTC--------EEEGGGCCTTTHHHHHHHHHHH
T ss_pred             ceEEEe-----------cCC--------CHHHHHHHHHhCCEEECCCC--------eEEEEecCHhhHHHHHHHHHhh
Confidence            999999           433        34557888889999999975        999997 778899999999865

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.88  E-value=1.3e-22  Score=176.85  Aligned_cols=186  Identities=13%  Similarity=0.080  Sum_probs=132.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCC--cccccccc-CCccCEEEEccCccccCCCCceEEEE--EecCCCccccccch
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNT--HFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGWL--VTSDPNGILQDLGV   76 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~--~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~R~G~~--~~~~~~~~~~~~~~   76 (233)
                      +|+++|++||++||+||+|.++.+++.  ...++..+ +..+++|+++|+||.|+++|+|+||+  ++++. ++.+  .+
T Consensus       207 ~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~-~~~~--~l  283 (409)
T 4eu1_A          207 QVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASA-EEAK--RL  283 (409)
T ss_dssp             HHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSH-HHHH--HH
T ss_pred             HHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCH-HHHH--HH
Confidence            689999999999999999999998762  12233332 45578899999999999999999997  66552 2221  13


Q ss_pred             hhhhhhhhHHhhhhhh-hhccCcchHH-HHHHHHhhhc-----HHHHHHHHHHHHHHHHHHHHHHhhcCCC---cccccC
Q 047983           77 AFFHSISLNMRMDDYL-LLSESVYTTV-GAVPQILEKT-----EEEFFSKITDILREAADICCDRLKEIPC---ITCPKK  146 (233)
Q Consensus        77 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~  146 (233)
                      +        ..+.... ....+++... .+.+..++..     +.+++++.++.++++++.+.+.|++++.   +.. ..
T Consensus       284 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~  354 (409)
T 4eu1_A          284 V--------SQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSH-IE  354 (409)
T ss_dssp             H--------HHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHH-HH
T ss_pred             H--------HHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcce-ec
Confidence            3        3333221 1122233333 4444445433     2456888999999999999999988632   443 57


Q ss_pred             CCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHHHHH
Q 047983          147 PEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRMKAF  225 (233)
Q Consensus       147 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l~~~  225 (233)
                      |++|+|+|           ++.        +.+++.++++++||.+.||.        |++++. ++++++++++.|.++
T Consensus       355 ~~~~~~~~-----------~~~--------~~~~~~~ll~~~gv~v~p~~--------Ri~~~~~~~~~i~~~~~~l~~~  407 (409)
T 4eu1_A          355 RQVGMMAY-----------TGL--------TREQVELLRSEYHIYMTLNG--------RAAVSGLNSTNVEYVSQAIHNV  407 (409)
T ss_dssp             HSCSSEEE-----------CCC--------CHHHHHHHHHHHCEECCTTC--------EEEGGGCCTTTHHHHHHHHHHH
T ss_pred             CCceEEEE-----------eCC--------CHHHHHHHHHcCCEEEcCCC--------EEEEEecCHhhHHHHHHHHHHH
Confidence            89999999           443        34567888888999999963        899986 677799999999876


Q ss_pred             H
Q 047983          226 Y  226 (233)
Q Consensus       226 l  226 (233)
                      +
T Consensus       408 l  408 (409)
T 4eu1_A          408 T  408 (409)
T ss_dssp             H
T ss_pred             h
Confidence            5

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.88  E-value=1.8e-21  Score=166.33  Aligned_cols=185  Identities=14%  Similarity=0.174  Sum_probs=128.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEE-ecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV-TSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~-~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||+++|+||+|.++.++ .........+..++++++.|+||.++++|+|+||++ +++  ++.         
T Consensus       168 ~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~--~~~---------  235 (361)
T 3ftb_A          168 HVLKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNK--EIA---------  235 (361)
T ss_dssp             HHHHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCH--HHH---------
T ss_pred             HHHHHhhhcCCEEEEECcchhhcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCH--HHH---------
Confidence            6888999999999999999999887 333334444556889999999999999999999998 554  233         


Q ss_pred             hhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccCCCccEEEEEecC
Q 047983           81 SISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCIT-CPKKPEGSMFVMYCGS  158 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~g~~~~~~~~  158 (233)
                           ..+..... ..++++.. .+....++  ..+++++.++.++++++.+.+.|++++++. . .++. |.|+|    
T Consensus       236 -----~~~~~~~~-~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~-~~~~~----  301 (361)
T 3ftb_A          236 -----AKIKAKQN-PWNINCFAEMAAINCLK--DTNYIEESLLWIKKERKRFIEELNKIGFIKRV-FSPH-ANFVL----  301 (361)
T ss_dssp             -----HHHHTTSC-TTCSCHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEE-ECCS-SSEEE----
T ss_pred             -----HHHHhhCC-CCCCCHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHhCCCCcee-cCCC-CeEEE----
Confidence                 33332211 11233333 44444444  257889999999999999999999887775 3 4454 55677    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAF  225 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~  225 (233)
                           ++++.     . +..++... |.++||.+.||+.|+.  .+++|++++. .+++++..+.|.++
T Consensus       302 -----~~~~~-----~-~~~~l~~~-l~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~~~l~~~l~~~  357 (361)
T 3ftb_A          302 -----CRLEN-----I-SGEKLYDS-LLKEDIVIRRCCNFIGLDDSFVRFAIKD-EKKNTKFLRALKGV  357 (361)
T ss_dssp             -----EEESS-----S-CHHHHHHH-HHTTTEECEECTTSTTCCTTEEEEECCC-HHHHHHHHHHHHHH
T ss_pred             -----EEcCC-----C-CHHHHHHH-HHHCCeEEeeCccCCCCCCCEEEEEcCC-HHHHHHHHHHHHHH
Confidence                 44432     1 24455555 4556999999999975  6899999985 33334444444433

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.88  E-value=3e-22  Score=174.44  Aligned_cols=187  Identities=16%  Similarity=0.134  Sum_probs=136.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCC--CccccccccC-CccCEEEEccCccccCCCCceEEEEEe---cCCCccccccc
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGN--THFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVT---SDPNGILQDLG   75 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~--~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~---~~~~~~~~~~~   75 (233)
                      +|+++|++||++||+||+|.++.+++  ..+.++..+. ..+++|++.|+||.|+++|+|+||+++   ++  ++++  .
T Consensus       207 ~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~--~~~~--~  282 (412)
T 1ajs_A          207 QIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEP--DSIL--R  282 (412)
T ss_dssp             HHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSH--HHHH--H
T ss_pred             HHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcceEEEEEecCCH--HHHH--H
Confidence            68999999999999999999998875  2333444332 357899999999999999999999999   44  3222  1


Q ss_pred             hhhhhhhhhHHhhhhhhhh-ccCcchHH-HHHHHHhhhcH-----HHHHHHHHHHHHHHHHHHHHHhhcCC---Cccccc
Q 047983           76 VAFFHSISLNMRMDDYLLL-SESVYTTV-GAVPQILEKTE-----EEFFSKITDILREAADICCDRLKEIP---CITCPK  145 (233)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~  145 (233)
                      ++        ..+...... ..++++.. .+....++...     ++++++.++.++++++.+.+.|++++   ++.. .
T Consensus       283 ~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~  353 (412)
T 1ajs_A          283 VL--------SQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNH-I  353 (412)
T ss_dssp             HH--------HHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHH-H
T ss_pred             HH--------HHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeE-E
Confidence            22        333321111 11123333 44444454332     46889999999999999999998874   3553 5


Q ss_pred             CCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHHHH
Q 047983          146 KPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRMKA  224 (233)
Q Consensus       146 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l~~  224 (233)
                      .|.+|+|+|           +.+        +.+++..+++++||.+.|+        +|++++. +++++++++++|.+
T Consensus       354 ~~~~~~~~~-----------~~~--------~~~~~~~~l~~~gv~v~~~--------~Ris~~~~~~~~i~~~~~~l~~  406 (412)
T 1ajs_A          354 TDQIGMFSF-----------TGL--------NPKQVEYLINQKHIYLLPS--------GRINMCGLTTKNLDYVATSIHE  406 (412)
T ss_dssp             HHCCSSEEE-----------CCC--------CHHHHHHHHHTTCEECCTT--------SEEEGGGCCTTTHHHHHHHHHH
T ss_pred             cCCCceEEE-----------eCC--------CHHHHHHHHHhCCEEecCC--------cEEEeeeCCHHHHHHHHHHHHH
Confidence            788999999           432        2567778888999999984        5999995 88899999999999


Q ss_pred             HHHH
Q 047983          225 FYYR  228 (233)
Q Consensus       225 ~l~~  228 (233)
                      ++++
T Consensus       407 ~l~~  410 (412)
T 1ajs_A          407 AVTK  410 (412)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8865

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.88  E-value=2.1e-22  Score=178.09  Aligned_cols=191  Identities=15%  Similarity=0.102  Sum_probs=137.9

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCC--cccccccc-CCccCEEEEccCccccCCCCceEEEE--Ee--------cCCC
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNT--HFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGWL--VT--------SDPN   68 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~--~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~R~G~~--~~--------~~~~   68 (233)
                      +|+++|++||+++|+||+|+++.+++.  ...++..+ +..+++|++.|+||.|+++|+|+||+  ++        ++. 
T Consensus       226 ~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~-  304 (448)
T 3meb_A          226 ELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNK-  304 (448)
T ss_dssp             HHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHH-
T ss_pred             HHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCH-
Confidence            589999999999999999999988762  22233322 34578999999999999999999998  66        431 


Q ss_pred             ccccccchhhhhhhhhHHhhhhhhh-hccCcchHH-HHHHHHhhhc-----HHHHHHHHHHHHHHHHHHHHHHhhcC--C
Q 047983           69 GILQDLGVAFFHSISLNMRMDDYLL-LSESVYTTV-GAVPQILEKT-----EEEFFSKITDILREAADICCDRLKEI--P  139 (233)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~--~  139 (233)
                      ...+  .++        ..+..... ...+++... .+++..+...     +.+++++++++++++++.+.+.|+++  +
T Consensus       305 ~~~~--~l~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  374 (448)
T 3meb_A          305 ALSA--AMV--------SGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTP  374 (448)
T ss_dssp             HHHH--HHH--------HHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHH--HHH--------HHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            1211  122        22222211 122333333 4455555432     12568899999999999999999886  4


Q ss_pred             C------cccccCCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CH
Q 047983          140 C------ITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EP  212 (233)
Q Consensus       140 ~------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~  212 (233)
                      +      +.. ..|++|+|+|           +++        +.+++.++++++||.+.||+.       |+|++. ++
T Consensus       375 ~~~~~~~~~~-~~~~~g~~~~-----------~~~--------~~~~~~~ll~~~gV~v~~G~g-------Ris~a~~~~  427 (448)
T 3meb_A          375 GPGSKGTWDH-ILTAIGMFTF-----------TGL--------TPEHVDYLKEKWSIYLVKAGG-------RMSMCGLTE  427 (448)
T ss_dssp             CSTTTCCCTH-HHHCCSSEEE-----------CCC--------CHHHHHHHHHHHCEEECSGGG-------EEEGGGCCT
T ss_pred             CcCcccccce-eCCCceEEEe-----------cCC--------CHHHHHHHHHhCCEEEeCCCc-------EEEEecCCH
Confidence            4      543 5789999999           543        357788888899999999862       999997 88


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 047983          213 SAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       213 ~~l~~~~~~l~~~l~~~~  230 (233)
                      +++++++++|.+++++..
T Consensus       428 ~~i~~~~~~l~~~l~~~~  445 (448)
T 3meb_A          428 SNCDYVAEAIHDAVTKLP  445 (448)
T ss_dssp             TTHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            889999999999997543

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.88  E-value=1.3e-21  Score=166.98  Aligned_cols=186  Identities=17%  Similarity=0.251  Sum_probs=133.2

Q ss_pred             hHHHHHHH--cCcEEEEccccCccccCCCccccccccCCc-cCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            2 CIEETTKK--LGIMVIADEVYGHLVFGNTHFVPMGVFGSI-VPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         2 ~i~~l~~~--~~~~lI~De~y~~~~~~~~~~~~~~~~~~~-~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      +|.++|+.  ||+++|+||+|.++.+++.....+...+.. ++++++.|+||.|+++|+|+||+++++  +++       
T Consensus       162 ~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~--~~~-------  232 (354)
T 3ly1_A          162 VIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHP--TVI-------  232 (354)
T ss_dssp             HHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCH--HHH-------
T ss_pred             HHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCH--HHH-------
Confidence            34455554  999999999999998876544444444555 889999999999999999999999976  333       


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                             ..+...... .++++.. .++...++.  .+++++.++.++++++.+.+.|+++ ++.. . |..|.|+|   
T Consensus       233 -------~~~~~~~~~-~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~-~-~~~~~~~~---  296 (354)
T 3ly1_A          233 -------ALMGRYVAG-EKINFSGVDAALASMND--SAFITYSKKSNDVSRQILLKALEDL-KLPY-L-PSEGNFVF---  296 (354)
T ss_dssp             -------HHHGGGTTC-SCCCHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHHHHHH-TCCB-C-CCCSSEEE---
T ss_pred             -------HHHHHhcCC-CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCeE-C-CCCceEEE---
Confidence                   333332221 2233333 444444432  3788999999999999999999887 5543 3 44567789   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~  228 (233)
                            +.++  .     +..++ .+.|.++||.+. |+.++..+++|++++ ++++++++++.|.+++++
T Consensus       297 ------~~~~--~-----~~~~~-~~~l~~~gi~v~-g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~~  351 (354)
T 3ly1_A          297 ------HQLV--V-----PLKDY-QTHMADAGVLIG-RAFPPADNWCRISLG-TPQEMQWVADTMREFRKK  351 (354)
T ss_dssp             ------EECS--S-----CHHHH-HHHHHHTTEECC-CCCTTCTTEEEEECC-CHHHHHHHHHHHHHHHHT
T ss_pred             ------EECC--C-----CHHHH-HHHHHHCCEEEe-ecCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence                  5443  1     24444 445557899998 776666899999988 677899999999988864

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.87  E-value=2.8e-22  Score=174.04  Aligned_cols=187  Identities=16%  Similarity=0.071  Sum_probs=132.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCc--ccccccc-CCccCEEEEccCccccCCCCceEEEEEecCCC-ccccccchh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTH--FVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPN-GILQDLGVA   77 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~--~~~~~~~-~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~-~~~~~~~~~   77 (233)
                      +|+++|++||+++|+||+|.++.+++..  ..++..+ +..+++|+++|+||.|+++|+|+||++++..+ ...+  .+.
T Consensus       199 ~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~--~~~  276 (401)
T 7aat_A          199 ELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAK--RVE  276 (401)
T ss_dssp             HHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHH--HHH
T ss_pred             HHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccCceEEEEEEeCCHHHHH--HHH
Confidence            6899999999999999999999887531  2233322 45678999999999999999999999874311 1111  122


Q ss_pred             hhhhhhhHHhhhhhhh-hccCcchHH-HHHHHHhhhc-----HHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCC
Q 047983           78 FFHSISLNMRMDDYLL-LSESVYTTV-GAVPQILEKT-----EEEFFSKITDILREAADICCDRLKEIP---CITCPKKP  147 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~  147 (233)
                              ..+..... ...+++... .+.+.++.+.     +.+++++.++.++++++.+.+.|++++   ++.. ..|
T Consensus       277 --------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-~~~  347 (401)
T 7aat_A          277 --------SQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQH-ITD  347 (401)
T ss_dssp             --------HHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHH-HHH
T ss_pred             --------HHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCce-ecC
Confidence                    22222111 222333333 3444444332     156788999999999999999998863   3443 578


Q ss_pred             CccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHHHHHH
Q 047983          148 EGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRMKAFY  226 (233)
Q Consensus       148 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l~~~l  226 (233)
                      ++++|+|           ++.        +.+.+.++++++||.+.|+        +|++++. ++++++++++.|.+++
T Consensus       348 ~~~~~~~-----------~~~--------~~~~~~~ll~~~gi~v~~~--------~Ris~~~~~~~~i~~~~~~l~~~~  400 (401)
T 7aat_A          348 QIGMFCF-----------TGL--------KPEQVERLTKEFSIYMTKD--------GRISVAGVASSNVGYLAHAIHQVT  400 (401)
T ss_dssp             CCSSEEE-----------CCC--------CHHHHHHHHHHHCEECCTT--------CEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred             CcceEEe-----------cCC--------CHHHHHHHHHhCCEeccCC--------CeEEeccCChhhHHHHHHHHHHHh
Confidence            9999999           443        3556678888999999875        5999985 6666999999998765

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.87  E-value=3.6e-22  Score=174.06  Aligned_cols=188  Identities=13%  Similarity=0.107  Sum_probs=133.8

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCC--CccccccccC-Ccc---CEEEEccCccccCCCCceEEEEE--e-----cCCC
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGN--THFVPMGVFG-SIV---PVLTLGSISKRWIVPGWRLGWLV--T-----SDPN   68 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~--~~~~~~~~~~-~~~---~~i~~~s~sK~~~~~G~R~G~~~--~-----~~~~   68 (233)
                      +|+++|++||++||+||+|.++.+++  ....++..+. ..+   ++|+++|+||.|+.+|+|+||++  +     ++  
T Consensus       200 ~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~--  277 (412)
T 1yaa_A          200 QIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNK--  277 (412)
T ss_dssp             HHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHH--
T ss_pred             HHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCH--
Confidence            68999999999999999999998875  1222343322 223   89999999999998999999998  6     33  


Q ss_pred             ccccccchhhhhhhhhHHhhhhhhh-hccCcchHH-HHHHHHhhhc-----HHHHHHHHHHHHHHHHHHHHHHhhcCC--
Q 047983           69 GILQDLGVAFFHSISLNMRMDDYLL-LSESVYTTV-GAVPQILEKT-----EEEFFSKITDILREAADICCDRLKEIP--  139 (233)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~--  139 (233)
                      ...+  .++        ..+..... ...+++... .++...++..     .+++++++++.++++++.+.+.|++++  
T Consensus       278 ~~~~--~l~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  347 (412)
T 1yaa_A          278 TIKP--AVT--------SQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTP  347 (412)
T ss_dssp             HHHH--HHH--------HHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHH--HHH--------HHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            2111  122        33332111 112223333 4445555443     246899999999999999999998864  


Q ss_pred             -CcccccCCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHH
Q 047983          140 -CITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEI  217 (233)
Q Consensus       140 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~  217 (233)
                       ++.. ..|++|+|+|           ++.        +.+.+.++++++||.+.|        ++|++++. +++++++
T Consensus       348 ~~~~~-~~~~~~~~~~-----------~~~--------~~~~~~~~l~~~gi~v~~--------~~Ris~~~~~~~~i~~  399 (412)
T 1yaa_A          348 GNWDH-IVNQCGMFSF-----------TGL--------TPQMVKRLEETHAVYLVA--------SGRASIAGLNQGNVEY  399 (412)
T ss_dssp             SCCTH-HHHCCSSEEE-----------CCC--------CHHHHHHHHHHHCEECCT--------TSEEEGGGCCTTTHHH
T ss_pred             CCeee-eccCceEEEe-----------eCC--------CHHHHHHHHHhCCEEecc--------CcEEEEccCCHhHHHH
Confidence             3553 6788999999           432        234557788889999987        57999996 8889999


Q ss_pred             HHHHHHHHHHHH
Q 047983          218 GLGRMKAFYYRH  229 (233)
Q Consensus       218 ~~~~l~~~l~~~  229 (233)
                      ++++|.++++.+
T Consensus       400 ~~~~l~~~~~~~  411 (412)
T 1yaa_A          400 VAKAIDEVVRFY  411 (412)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999988653

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.87  E-value=5.9e-21  Score=163.72  Aligned_cols=180  Identities=17%  Similarity=0.223  Sum_probs=133.9

Q ss_pred             hHHHHHHHc--CcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKL--GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~--~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|+++|++|  |+++|+||+|.++...+  .  ...++..++++++.|+||. +++|+|+||+++++  .++        
T Consensus       181 ~i~~~~~~~~~~~~li~De~~~~~~~~~--~--~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~--~~~--------  245 (367)
T 3euc_A          181 AIVRAAQGSVCRSLVVVDEAYQPFAQES--W--MSRLTDFGNLLVMRTVSKL-GLAGIRLGYVAGDP--QWL--------  245 (367)
T ss_dssp             HHHHHTBTTSCBCEEEEECTTCCSSSCC--S--GGGGGTCTTEEEEEECCCT-TSCSCCEEEEEECH--HHH--------
T ss_pred             HHHHhhhhcCCCcEEEEeCcchhhcccc--h--HHHHhhCCCEEEEecchhh-cccccCceeeeeCH--HHH--------
Confidence            688899999  99999999999976332  2  2234556789999999999 99999999999976  333        


Q ss_pred             hhhhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           80 HSISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                            ..+.... .++.++..+ .+....++.  .+++++.++.++++++.+.+.|++++++.  ..|.+|+|+|    
T Consensus       246 ------~~~~~~~~~~~~~~~~~-~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~--~~~~~~~~~~----  310 (367)
T 3euc_A          246 ------EQLDKVRPPYNVNVLTE-ATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGVT--VFPSAANFLL----  310 (367)
T ss_dssp             ------HHHGGGCCSSCCCHHHH-HHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTCE--ECCCSSSEEE----
T ss_pred             ------HHHHHhCCCCCCCHHHH-HHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcE--ECCCCCeEEE----
Confidence                  3333222 122222222 444444443  67889999999999999999999987775  3466788889    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                           +.++        +..+ +.+.|.++||.+.||+.|+.  .+++|++++ ++++++++++.|.+++
T Consensus       311 -----~~~~--------~~~~-l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l  365 (367)
T 3euc_A          311 -----ARVP--------DAAQ-TFDRLLARKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFAASL  365 (367)
T ss_dssp             -----EECS--------CHHH-HHHHHHTTTEECEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHHHHT
T ss_pred             -----EECC--------CHHH-HHHHHHHCCeEEEECCccCCCCCCEEEEecC-CHHHHHHHHHHHHHHh
Confidence                 5553        1444 44556788999999998864  689999998 7778899999988765

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.86  E-value=3.1e-21  Score=165.36  Aligned_cols=185  Identities=17%  Similarity=0.197  Sum_probs=131.2

Q ss_pred             hHHHHHH--HcCcEEEEccccCcccc--CCCcccc-ccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccch
Q 047983            2 CIEETTK--KLGIMVIADEVYGHLVF--GNTHFVP-MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGV   76 (233)
Q Consensus         2 ~i~~l~~--~~~~~lI~De~y~~~~~--~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~   76 (233)
                      +|.++++  ++|+++|+||+|.++.+  .+..+.+ +...+..+++++++|+||.|+++|+|+||+++++  +++     
T Consensus       174 ~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--~~~-----  246 (365)
T 3get_A          174 EATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANA--NII-----  246 (365)
T ss_dssp             HHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECH--HHH-----
T ss_pred             HHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCH--HHH-----
Confidence            3455555  67999999999999886  4433333 3333456789999999999999999999999966  333     


Q ss_pred             hhhhhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEE
Q 047983           77 AFFHSISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        77 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~  155 (233)
                               ..+..... ++.++..+ .++...++  ..+++++.++.++++++.+.+.|+++ ++.. .++ .|.|+| 
T Consensus       247 ---------~~~~~~~~~~~~~~~~~-~~~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~-~~~-~~~~~~-  310 (365)
T 3get_A          247 ---------SAFYKLRAPFNVSNLAL-KAAVAAMD--DDEFTEKTLENNFSQMELYKEFAKKH-NIKI-IDS-YTNFIT-  310 (365)
T ss_dssp             ---------HHHHHHSCTTCSCHHHH-HHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHT-TCEE-CCC-SSSEEE-
T ss_pred             ---------HHHHHhcCCCCcCHHHH-HHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHhC-CCEE-CCC-CCeEEE-
Confidence                     33332222 23222332 44444444  24788999999999999999999988 5553 444 456688 


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                              +.++..      +..++. +.|.++||.+.||+.|+ .+++|++++ ++++++++++.|++++
T Consensus       311 --------~~~~~~------~~~~~~-~~l~~~gi~v~~g~~~~-~~~iRis~~-~~~~i~~l~~~l~~~l  364 (365)
T 3get_A          311 --------YFFDEK------NSTDLS-EKLLKKGIIIRNLKSYG-LNAIRITIG-TSYENEKFFTEFDKIL  364 (365)
T ss_dssp             --------EECSSS------CHHHHH-HHHHTTTEECEECGGGT-CSEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred             --------EECCCC------CHHHHH-HHHHHCCEEEEECccCC-CCEEEEEcC-CHHHHHHHHHHHHHHh
Confidence                    544321      244444 45556799999999998 899999998 6778899999888765

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.86  E-value=1.5e-21  Score=166.49  Aligned_cols=191  Identities=15%  Similarity=0.228  Sum_probs=128.7

Q ss_pred             hHHHHHHHcC-cEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLG-IMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~-~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++++.++ .+||+||+|.++.+++...  ...++..++++++.|+||.++++|+|+||+++++  +++         
T Consensus       150 ~l~~l~~~~~~~~li~Dea~~~~~~~~~~~--~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~--~~~---------  216 (350)
T 3fkd_A          150 EILRLLNDHPDTTFVLDQSYVSFTTEEVIR--PADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANK--DFM---------  216 (350)
T ss_dssp             HHHHHHHHCTTSEEEEECTTTTSCSSCCCC--GGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCH--HHH---------
T ss_pred             HHHHHHHhCCCCEEEEECchhhhccCcchh--hHHhhcCCCEEEEecCchhccCcchheEeEEeCH--HHH---------
Confidence            5667777665 6999999999988765432  2445567889999999999999999999999965  333         


Q ss_pred             hhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..+..... ++.++..+ .+....++.. ..+.+..++.. ++++.+.+.|++++++.. . |.++.|+|     
T Consensus       217 -----~~~~~~~~~~~~~~~~~-~~~~~~l~~~-~~~~~~~~~~~-~~~~~l~~~L~~~~~~~~-~-~~~~~~~~-----  281 (350)
T 3fkd_A          217 -----KRVAAFSTPWAVNALAI-EAAKFILIHP-AQFTLPIRKWQ-RNTVDFITALNRLDGVEV-H-PSGTTFFL-----  281 (350)
T ss_dssp             -----HHHHTTCCTTCSCHHHH-HHHHHHHHCT-TTTCCCHHHHH-HHHHHHHHHHHHSTTEEE-C-CCSSSEEE-----
T ss_pred             -----HHHHHhCCCCCCCHHHH-HHHHHHHhCH-HHHHHHHHHHH-HHHHHHHHHHhcCCCcEE-C-CCCCcEEE-----
Confidence                 33333222 22222232 4444444332 22444445555 888999999988877764 3 45567778     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHHhh
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                          ++++..      +..++..++++++||.+.||+.|+.  .+++|++++ .+++.++..+.|+++++++.+
T Consensus       282 ----~~~~~~------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~~~~~~  344 (350)
T 3fkd_A          282 ----LRLKKG------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ-RPAQNQLFIKALETFLEKYEG  344 (350)
T ss_dssp             ----EEESSS------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHHTC---
T ss_pred             ----EECCCC------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHHhcc
Confidence                556531      3566666666558999999999976  689999998 445567777777777766654

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.86  E-value=6.9e-21  Score=163.15  Aligned_cols=187  Identities=16%  Similarity=0.215  Sum_probs=131.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|+++|+++|+||+|++|.  +...  +...+..++++++.|+||.|+++|+|+||+++++  +++         
T Consensus       169 ~~l~~l~~~~~~~li~De~~~~~~--~~~~--~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~--~~~---------  233 (360)
T 3hdo_A          169 EYIDELARRCAGMLVLDETYAEFA--ESNA--LELVRRHENVVVTRTLSKSYSLAGMRIGLAIARP--EVI---------  233 (360)
T ss_dssp             HHHHHHHHHBSSEEEEECTTGGGS--SCCC--THHHHHCSSEEEEEESTTTTSCTTSCCEEEECCH--HHH---------
T ss_pred             HHHHHHHHHCCCEEEEECChHhhC--Ccch--hHHhccCCCEEEEecchHhhcCCccceeeEeeCH--HHH---------
Confidence            378999999999999999999973  3222  2223445789999999999999999999999976  333         


Q ss_pred             hhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..+..... ++.++..+ .+....++.  .+++++.++.++++++.+.+.|+++ ++.. . +.+|.|+|     
T Consensus       234 -----~~~~~~~~~~~~~~~~~-~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~-~-~~~~~~~~-----  297 (360)
T 3hdo_A          234 -----AALDKIRDHYNLDRLAQ-AACVAALRD--QAYLSECCRRIRETREWFTTELRSI-GYDV-I-PSQGNYLF-----  297 (360)
T ss_dssp             -----HHHHHHSCSCCSCHHHH-HHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHT-TCEE-C-CCSSSEEE-----
T ss_pred             -----HHHHHhCCCCCCCHHHH-HHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCEE-c-CCCccEEE-----
Confidence                 33333222 23222333 444444432  5678999999999999999999887 5553 3 44667788     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                          +.++     +.  +.+.+.+.|.++||.+.|++..+..+++|++++ ++++++..++.|+++-+.+.
T Consensus       298 ----~~~~-----~~--~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~-~~~e~~~l~~al~~~~~~~~  356 (360)
T 3hdo_A          298 ----ATPP-----DR--DGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG-TREEMEQTLAALKEIGEGHH  356 (360)
T ss_dssp             ----EECT-----TC--CHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC-CHHHHHHHHHHHHHHHC---
T ss_pred             ----EECC-----CC--CHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHhcccc
Confidence                4443     11  344455566788999999887555799999998 66677888888877765543

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.86  E-value=4.1e-22  Score=172.51  Aligned_cols=185  Identities=15%  Similarity=0.145  Sum_probs=130.7

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCC-CccccccccCC-ccCEEEEccCccccCCCCceEEEEEe--cCCCccccccchh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGN-THFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVT--SDPNGILQDLGVA   77 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~-~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~--~~~~~~~~~~~~~   77 (233)
                      +|+++|++||++||+||+|.++.+++ ....++..++. .++++++.|+||.|+++|+|+||+++  +++ +.++  .+.
T Consensus       196 ~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~-~~~~--~~~  272 (396)
T 2q7w_A          196 TLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVAADS-ETVD--RAF  272 (396)
T ss_dssp             HHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSH-HHHH--HHH
T ss_pred             HHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEEcCCH-HHHH--HHH
Confidence            68999999999999999999998764 12233443332 36899999999999999999999997  331 2222  122


Q ss_pred             hhhhhhhHHhhhhhhh-hccCcchHH-HHHHHHhhhc-----HHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCC
Q 047983           78 FFHSISLNMRMDDYLL-LSESVYTTV-GAVPQILEKT-----EEEFFSKITDILREAADICCDRLKEIP---CITCPKKP  147 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~  147 (233)
                              ..+..... ....+++.. .+....++..     ..+++++.++.++++++.+.+.|++++   ++.. ..|
T Consensus       273 --------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~  343 (396)
T 2q7w_A          273 --------SQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSF-IIK  343 (396)
T ss_dssp             --------HHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTH-HHH
T ss_pred             --------HHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcce-ecC
Confidence                    22222111 111223333 4444444432     246888999999999999999998874   3553 578


Q ss_pred             CccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHHHHH
Q 047983          148 EGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRMKAF  225 (233)
Q Consensus       148 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l~~~  225 (233)
                      ++|+|+|           +..        +.+.+.++++++||.+.||        +|++++. +++++++++++|.++
T Consensus       344 ~~~~~~~-----------~~~--------~~~~~~~~l~~~gv~v~~~--------~Ris~~~~~~e~i~~~~~~l~~~  395 (396)
T 2q7w_A          344 QNGMFSF-----------SGL--------TKEQVLRLREEFGVYAVAS--------GRVNVAGMTPDNMAPLCEAIVAV  395 (396)
T ss_dssp             CCSSEEE-----------CCC--------CHHHHHHHHHHHCEECCTT--------CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred             CCceEEE-----------ecC--------CHHHHHHHHHhcCeeecCC--------ceEEEeecCHHHHHHHHHHHHhc
Confidence            8999999           433        2356778888899999984        6999996 888999999999875

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.86  E-value=1.5e-20  Score=159.10  Aligned_cols=179  Identities=16%  Similarity=0.177  Sum_probs=123.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|+++++ +|+||+|.+|...+..  .   ....+++++++|+||.|+++|+|+||+++++  +++         
T Consensus       155 ~~l~~l~~~~~~-~ivDea~~~~~~~~~~--~---~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~--~~~---------  217 (337)
T 3p1t_A          155 GELDQLRQRAGK-LLIDETYVDYSSFRAR--G---LAYGENELVFRSFSKSYGLAGLRLGALFGPS--ELI---------  217 (337)
T ss_dssp             HHHHHHHHHCSE-EEEECTTGGGSSCSSS--C---CCCBTTEEEEEESSSTTCCTTTCCEEEECCH--HHH---------
T ss_pred             HHHHHHHHhCCc-EEEECCChhhcccccc--c---cccCCCEEEEeeCchhccCcchheEEEEeCH--HHH---------
Confidence            368899999997 5569999987654321  1   2335788999999999999999999999987  333         


Q ss_pred             hhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..+..... .+.+...+ .++...++.  .++..+.++.+.++++.+.+.|+++ ++.. .+|.++++.|     
T Consensus       218 -----~~l~~~~~~~~~~~~~~-~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~-----  282 (337)
T 3p1t_A          218 -----AAMKRKQWFCNVGTLDL-HALEAALDN--DRAREAHIAKTLAQRRRVADALRGL-GYRV-ASSEANFVLV-----  282 (337)
T ss_dssp             -----HHHHTTSCTTCSCHHHH-HHHHHHHTC--HHHHHHHHHHHHHHHHHHHHHHHHT-TCCB-CCCSSSEEEE-----
T ss_pred             -----HHHHhhcCCCCCCHHHH-HHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHC-cCEE-CCCCCeEEEE-----
Confidence                 33332222 22223333 444444432  2345566677788889999999887 5553 5666655444     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                           ..+         +...+.+.|+++||.+.||+.|+..+++|+|++ ++++++..++.|+++.
T Consensus       283 -----~~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~-~~~~~~~l~~al~~~~  334 (337)
T 3p1t_A          283 -----ENA---------AGERTLRFLRERGIQVKDAGQFGLHHHIRISIG-REEDNDRLLAALAEYS  334 (337)
T ss_dssp             -----ECT---------TTHHHHHHHHHTTEECEEGGGGTCCSEEEEECC-CHHHHHHHHHHHHHHT
T ss_pred             -----EcC---------CHHHHHHHHHHCCeEEEECccCCCCCeEEEecC-CHHHHHHHHHHHHHHh
Confidence                 222         223456677889999999999998899999998 5666777777776654

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.85  E-value=2.5e-21  Score=170.39  Aligned_cols=182  Identities=14%  Similarity=0.113  Sum_probs=128.1

Q ss_pred             CcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhhhhhHHhhhh
Q 047983           11 GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMDD   90 (233)
Q Consensus        11 ~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (233)
                      ++..|.|++|.    ++  +.++..+. .+++|+++||||.|+++|+|+||++++++ ++++.   +        ..+..
T Consensus       219 ~~~~i~d~~~~----~~--~~s~~~~~-~~~~i~~~S~SK~~g~~G~RiG~~~~~~~-~l~~~---l--------~~~~~  279 (427)
T 2hox_A          219 GCKSIYDMVYY----WP--HYTPIKYK-ADEDILLFTMSKFTGHSGSRFGWALIKDE-SVYNN---L--------LNYMT  279 (427)
T ss_dssp             TCEEEEECTTC----ST--TTSCCCSC-BCCSEEEEEHHHHTSCGGGCCEEEEECCH-HHHHH---H--------HHHHH
T ss_pred             CCCEEEeeccc----CC--CCCccccC-CCceEEEEeChhcCCCCCceEEEEEECCH-HHHHH---H--------HHHHH
Confidence            34456666664    22  22333343 57899999999999999999999999632 34421   1        22333


Q ss_pred             hhhhccCcchHHHHHHHHhhhc----------HHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-------------ccCC
Q 047983           91 YLLLSESVYTTVGAVPQILEKT----------EEEFFSKITDILREAADICCDRLKEIPCITC-------------PKKP  147 (233)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-------------~~~~  147 (233)
                      ....+.+...| .+...+++..          .++++++.++.++++++.+.+.|++++++..             +..|
T Consensus       280 ~~~~~~~~~~q-~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p  358 (427)
T 2hox_A          280 KNTEGTPRETQ-LRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRP  358 (427)
T ss_dssp             HHTSSCCHHHH-HHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEEC
T ss_pred             hcCCCCCHHHH-HHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCC
Confidence            22233333344 3444445432          2357788999999999999999988755432             1357


Q ss_pred             CccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-CCcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          148 EGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-KDWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       148 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                      ++|+|+|         ++++.       ++.+++.++++++||.+.||+.|+. .+|+|+|++.+++++++++++|.+++
T Consensus       359 ~~g~f~~---------~~~~~-------~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~~~e~l~~~l~~l~~~~  422 (427)
T 2hox_A          359 PSPSYAW---------VKCEW-------EEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMV  422 (427)
T ss_dssp             CCCSEEE---------EEECS-------GGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             CCceEEE---------EECCC-------cHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence            7899999         55542       2456677778889999999999986 78999999999999999999999987


Q ss_pred             HH
Q 047983          227 YR  228 (233)
Q Consensus       227 ~~  228 (233)
                      ++
T Consensus       423 ~~  424 (427)
T 2hox_A          423 KA  424 (427)
T ss_dssp             TC
T ss_pred             hh
Confidence            54

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.84  E-value=2.4e-21  Score=167.64  Aligned_cols=185  Identities=16%  Similarity=0.087  Sum_probs=129.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCC-ccccccccC-CccCEEEEccCccccCCCCceEEEEEe--cCCCccccccchh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNT-HFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVT--SDPNGILQDLGVA   77 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~-~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~--~~~~~~~~~~~~~   77 (233)
                      +|+++|++||+++|+||+|+++.+++. ...++..+. ..+++++++|+||.++++|+|+||+++  +++ ++++  .+.
T Consensus       193 ~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~-~~~~--~l~  269 (394)
T 2ay1_A          193 EIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADA-ATRE--LAQ  269 (394)
T ss_dssp             HHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSH-HHHH--HHH
T ss_pred             HHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeCCH-HHHH--HHH
Confidence            689999999999999999999987641 222333232 236799999999999999999999998  331 2322  122


Q ss_pred             hhhhhhhHHhhhhhhh-hccCcchHH-HHHHHHhhhc-----HHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCC
Q 047983           78 FFHSISLNMRMDDYLL-LSESVYTTV-GAVPQILEKT-----EEEFFSKITDILREAADICCDRLKEIP---CITCPKKP  147 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~  147 (233)
                              ..+..... ...++++.. .+....++..     ..++.+++++.++++++.+.+.|++++   ++.. ..|
T Consensus       270 --------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~  340 (394)
T 2ay1_A          270 --------GAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGF-VAE  340 (394)
T ss_dssp             --------HHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTH-HHH
T ss_pred             --------HHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeE-EcC
Confidence                    22221111 111223333 4444444332     246889999999999999999998853   3543 567


Q ss_pred             CccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHHHHH
Q 047983          148 EGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRMKAF  225 (233)
Q Consensus       148 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l~~~  225 (233)
                      .+|+|+|         +.++          .+.+.++++++||.+.||        +|++++. +++++++++++|.++
T Consensus       341 ~~g~~~~---------~~~~----------~~~~~~~l~~~gi~v~~~--------~Ris~~~~~~~~i~~~~~~l~~~  392 (394)
T 2ay1_A          341 HRGMFSR---------LGAT----------PEQVKRIKEEFGIYMVGD--------SRINIAGLNDNTIPILARAIIEV  392 (394)
T ss_dssp             CCSSEEE---------CCCC----------HHHHHHHHHHHCEECCTT--------CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred             CceEEEe---------eCCC----------HHHHHHHHHhCCEEecCC--------CeEEeecCCHhhHHHHHHHHHHc
Confidence            8899999         4332          245678888999999984        5999986 888899999998765

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.84  E-value=2.9e-20  Score=161.20  Aligned_cols=194  Identities=12%  Similarity=0.159  Sum_probs=131.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccc-cCCccC-EEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGV-FGSIVP-VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~-~~~~~~-~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++|++||++||+||+|+.+.++... .++.. .+..++ .++++|+||.++.+|   ||+++++  ++++.  +. 
T Consensus       193 ~~l~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~~--~~~~~--l~-  263 (398)
T 3a2b_A          193 PELTSIANEFDAAVMVDDAHSLGVIGHKG-AGTASHFGLNDDVDLIMGTFSKSLASLG---GFVAGDA--DVIDF--LK-  263 (398)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTSSGGG-CCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEECH--HHHHH--HH-
T ss_pred             HHHHHHHHHcCcEEEEECCCcccccCCCC-CchHhhcCCCcCCeEEEecccccccCCC---cEEEeCH--HHHHH--HH-
Confidence            37899999999999999999988764322 22222 233345 599999999999889   9999976  44421  11 


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                             .....+...+.+.+.+.++....++.  .++.++.++.++++++.+.+.|+++ ++.. ..|. |+|+|    
T Consensus       264 -------~~~~~~~~~~~~~~~~~a~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~-g~~~~----  327 (398)
T 3a2b_A          264 -------HNARSVMFSASMTPASVASTLKALEI--IQNEPEHIEKLWKNTDYAKAQLLDH-GFDL-GATE-SPILP----  327 (398)
T ss_dssp             -------HHCHHHHSSBCCCHHHHHHHHHHHHH--HHHCTHHHHHHHHHHHHHHHHHHHT-TCCB-CSCC-SSEEE----
T ss_pred             -------HhcccceecCCCCHHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHHHhc-CCCc-CCCC-CCEEE----
Confidence                   11111222222223332333333432  2456788999999999999999887 5554 4565 67888    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHHHh
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRITFAV--EPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~~  230 (233)
                           +.++...     +..++..+ |.++||.+.||+.|+.   .+++|++++.  +++++++++++|.+++++..
T Consensus       328 -----~~~~~~~-----~~~~l~~~-l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~~  393 (398)
T 3a2b_A          328 -----IFIRSNE-----KTFWVTKM-LQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAE  393 (398)
T ss_dssp             -----EECCCHH-----HHHHHHHH-HHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred             -----EEcCCHH-----HHHHHHHH-HHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHhC
Confidence                 5553211     13344444 4455999999998863   5899999996  89999999999999987653

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.83  E-value=1.7e-19  Score=155.10  Aligned_cols=181  Identities=17%  Similarity=0.133  Sum_probs=127.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCcc-CEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIV-PVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~-~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +++.++|+.+++++|+||+|+++.++. .  .+...+..+ +++++.|+||.++++|+|+||+++++  +++        
T Consensus       184 ~~l~~l~~~~~~~li~De~~~~~~~~~-~--~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--~~~--------  250 (369)
T 3cq5_A          184 DDVERIINVAPGIVIVDEAYAEFSPSP-S--ATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANP--AFI--------  250 (369)
T ss_dssp             HHHHHHHHHCSSEEEEECTTGGGCCSC-C--GGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECT--HHH--------
T ss_pred             HHHHHHHHhCCCEEEEECCchhhcCCc-c--hHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCH--HHH--------
Confidence            368899999999999999999987541 1  122224445 89999999999999999999999987  333        


Q ss_pred             hhhhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           80 HSISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                            ..+.... .++.++..+ .+....++.  .+++++.++.++++++.+.+.|++. ++.. . |.+|.|+|    
T Consensus       251 ------~~l~~~~~~~~~~~~~~-~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~-~~~~~~~~----  314 (369)
T 3cq5_A          251 ------DAVMLVRLPYHLSALSQ-AAAIVALRH--SADTLGTVEKLSVERVRVAARLEEL-GYAV-V-PSESNFVF----  314 (369)
T ss_dssp             ------HHHHTTSCTTCSCHHHH-HHHHHHHHT--HHHHHTHHHHHHHHHHHHHHHHHHH-TCEE-E-CCSSSEEE----
T ss_pred             ------HHHHHcCCCCCCCHHHH-HHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhC-CCEE-C-CCCCeEEE----
Confidence                  3333221 123222222 444444432  4578889999999999999999875 5543 3 44567888    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                           ++++  .     +..++. +.|.++||.+.||   +..+++|++++ ++++++++++.|.++++
T Consensus       315 -----~~~~--~-----~~~~l~-~~l~~~gi~v~~~---~~~~~iRis~~-~~~~i~~~~~~l~~~~~  366 (369)
T 3cq5_A          315 -----FGDF--S-----DQHAAW-QAFLDRGVLIRDV---GIAGHLRTTIG-VPEENDAFLDAAAEIIK  366 (369)
T ss_dssp             -----EECC--S-----SHHHHH-HHHHHTTEECBCC---SCTTEEEEECC-CHHHHHHHHHHHHHHHT
T ss_pred             -----EECC--C-----CHHHHH-HHHHHCCEEEEEC---CCCCeEEEEeC-CHHHHHHHHHHHHHHHh
Confidence                 5443  1     244444 4456889999998   34689999998 67788999999887764

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.80  E-value=4.1e-19  Score=150.76  Aligned_cols=175  Identities=18%  Similarity=0.222  Sum_probs=120.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++++..| ++|+||+|.++..+  ..  +..++..++++++.|+||.|+++|+|+||+++++  +++          
T Consensus       159 ~l~~l~~~~~-~li~De~~~~~~~~--~~--~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~--~~~----------  221 (335)
T 1uu1_A          159 EIERILKTGA-FVALDEAYYEFHGE--SY--VDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASE--KFI----------  221 (335)
T ss_dssp             HHHHHHHTTC-EEEEECTTHHHHCC--CC--GGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECH--HHH----------
T ss_pred             HHHHHHHhCC-EEEEECcchhhcch--hH--HHHhhhCCCEEEEecchhhcCCcccCeEEEEeCH--HHH----------
Confidence            5677777778 89999999987642  11  2223455789999999999999999999999976  333          


Q ss_pred             hhhHHhhhhhh-hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           82 ISLNMRMDDYL-LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                          ..+.... .++.++..+ .++.+.++.  .+++++.++.++++++.+.+.|+++ ++..  .|.+|+|+|      
T Consensus       222 ----~~l~~~~~~~~~~~~~~-~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~--~~~~~~~~~------  285 (335)
T 1uu1_A          222 ----DAYNRVRLPFNVSYVSQ-MFAKVALDH--REIFEERTKFIVEERERMKSALREM-GYRI--TDSRGNFVF------  285 (335)
T ss_dssp             ----HHHHHHSCTTCSCHHHH-HHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHH-TCCB--CCCCSSEEE------
T ss_pred             ----HHHHHhcCCCCcCHHHH-HHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHC-CcEE--cCCCCeEEE------
Confidence                3332221 133333333 444444543  4578889999999999999999887 4542  355678899      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAF  225 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~  225 (233)
                         ++++.     .  +...+.+.|.++||.+.|+     .+++|++++. ++++++++++|+++
T Consensus       286 ---~~~~~-----~--~~~~~~~~l~~~gi~v~~~-----~~~iRis~~~-~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          286 ---VFMEK-----E--EKERLLEHLRTKNVAVRSF-----REGVRITIGK-REENDMILRELEVF  334 (335)
T ss_dssp             ---EECCT-----H--HHHHHHHHHHHHTEEEEEE-----TTEEEEECCC-HHHHHHHHHHHHCC
T ss_pred             ---EECCC-----C--CHHHHHHHHHHCCEEEEEC-----CCeEEEEeCC-HHHHHHHHHHHHhh
Confidence               55431     0  3333444455789999982     4799999975 45688888888653

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.79  E-value=6.6e-18  Score=145.14  Aligned_cols=202  Identities=12%  Similarity=0.040  Sum_probs=130.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|+.+.+.    .+   +...++.+++.|+||.++.++ ++||+++++  .+++.+.-....
T Consensus       166 ~~i~~l~~~~~~~li~D~a~~~~~~~----~~---~~~~~~di~~~s~sK~~~~~~-g~G~~~~~~--~~~~~~~~~~~~  235 (386)
T 2dr1_A          166 PELAKVAKEHDKLVFVDAVSAMGGAD----IK---FDKWGLDVVFSSSQKAFGVPP-GLAIGAFSE--RFLEIAEKMPER  235 (386)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTBTTBC----CC---TTTTTCSEEEEETTSTTCCCS-SCEEEEECH--HHHHHHTTCTTC
T ss_pred             HHHHHHHHHcCCeEEEEccccccCcc----cc---ccccCCcEEEEeccccccCCC-ceEEEEECH--HHHHHHhcCCCC
Confidence            37899999999999999999975432    12   223356799999999988763 399999987  444321000000


Q ss_pred             --hhhhHHhhhhhh---hhccCcchHH-HHHHHHhhhcHHH--HHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC---c
Q 047983           81 --SISLNMRMDDYL---LLSESVYTTV-GAVPQILEKTEEE--FFSKITDILREAADICCDRLKEIPCITCPKKPE---G  149 (233)
Q Consensus        81 --~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~  149 (233)
                        ..+.........   ....+++... .++...++. ..+  .+++.++.++++++++.+.|+++ ++.. ..|+   .
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~  312 (386)
T 2dr1_A          236 GWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRI-IEKMGGKEKWLEMYEKRAKMVREGVREI-GLDI-LAEPGHES  312 (386)
T ss_dssp             CSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCB-SSCTTCBC
T ss_pred             ceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCee-CcCccccC
Confidence              000000011110   1111223322 333333322 223  37788999999999999999887 5554 4454   3


Q ss_pred             cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHH
Q 047983          150 SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       150 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~  227 (233)
                      +.++|         ++++.    +. +..++..+++ ++||.+.||+.+...+++|++++  .+++++++++++|.++++
T Consensus       313 ~~~~~---------~~~~~----~~-~~~~~~~~l~-~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  377 (386)
T 2dr1_A          313 PTITA---------VLTPP----GI-KGDEVYEAMR-KRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVIN  377 (386)
T ss_dssp             SSEEE---------EECCT----TC-CHHHHHHHHH-HTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred             CceEE---------EEcCC----CC-CHHHHHHHHH-HCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            67788         55442    11 3455555555 55999999998766789999999  489999999999999998


Q ss_pred             HHh
Q 047983          228 RHA  230 (233)
Q Consensus       228 ~~~  230 (233)
                      +..
T Consensus       378 ~~~  380 (386)
T 2dr1_A          378 ELK  380 (386)
T ss_dssp             HHH
T ss_pred             HcC
Confidence            764

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.78  E-value=7.2e-18  Score=145.61  Aligned_cols=198  Identities=12%  Similarity=0.096  Sum_probs=126.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh-
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF-   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~-   79 (233)
                      ++|+++|+++|++||+||+|+ +  +. .+..   +...++.+++.|+||.++.+| |+||+++++  .+++.  +.+. 
T Consensus       179 ~~i~~l~~~~~~~li~Dea~~-~--g~-~~~~---~~~~~~di~~~s~sK~l~~~~-~~G~l~~~~--~~~~~--~~~~~  246 (393)
T 1vjo_A          179 EGVGELCREFGTLLLVDTVTS-L--GG-VPIF---LDAWGVDLAYSCSQKGLGCSP-GASPFTMSS--RAIEK--LQRRR  246 (393)
T ss_dssp             TTHHHHHHHHTCEEEEECTTT-T--TT-SCCC---TTTTTCSEEECCSSSTTCSCS-SCEEEEECH--HHHHH--HHTCS
T ss_pred             HHHHHHHHHcCCEEEEECCcc-c--cC-cCCc---ccccCccEEEEcCcccccCCC-ceEEEEECH--HHHHH--HhccC
Confidence            479999999999999999999 2  22 2222   233456689999999989888 999999987  44431  1000 


Q ss_pred             ---hhh--hhH--Hhhhhhhhhcc-CcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCc-
Q 047983           80 ---HSI--SLN--MRMDDYLLLSE-SVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEG-  149 (233)
Q Consensus        80 ---~~~--~~~--~~~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-  149 (233)
                         ...  +..  ........... +++... .++...++...+.++++.++.++++++++.+.|+++ ++.. ..|.+ 
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~  324 (393)
T 1vjo_A          247 TKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSL-HVEKEY  324 (393)
T ss_dssp             SCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB-SSCGGG
T ss_pred             CCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-CCcc-cCCccc
Confidence               000  000  00000001111 223332 344444433233457889999999999999999887 5654 45554 


Q ss_pred             --cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEe-e--cCHHHHHHHHHHHHH
Q 047983          150 --SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITF-A--VEPSAFEIGLGRMKA  224 (233)
Q Consensus       150 --g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~-~--~~~~~l~~~~~~l~~  224 (233)
                        +.+++         ++++.    +. +..++...+++++||.+.||+.|...+++|+++ +  .+++++++++++|.+
T Consensus       325 ~~~~~~~---------~~~~~----~~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~  390 (393)
T 1vjo_A          325 RLPTLTT---------VCIPD----GV-DGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQ  390 (393)
T ss_dssp             BCSSEEE---------EECCT----TC-CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred             cCCcEEE---------EEcCC----CC-CHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHH
Confidence              34555         44432    11 345555555544599999999888789999994 3  367789999999988


Q ss_pred             HH
Q 047983          225 FY  226 (233)
Q Consensus       225 ~l  226 (233)
                      ++
T Consensus       391 ~l  392 (393)
T 1vjo_A          391 VL  392 (393)
T ss_dssp             HH
T ss_pred             Hh
Confidence            76

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.78  E-value=2.8e-18  Score=150.48  Aligned_cols=197  Identities=18%  Similarity=0.147  Sum_probs=129.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccC-CccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++|+||+|+.+.++.........++ ..+..+++.|+||.++++|   ||+++++  ++++.  +.  
T Consensus       214 ~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~~g---G~v~~~~--~l~~~--l~--  284 (427)
T 2w8t_A          214 KEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVG---GFVVSNH--PKFEA--VR--  284 (427)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSCC---EEEEECC--TTGGG--GG--
T ss_pred             HHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhccCC---CEEEeCH--HHHHH--HH--
Confidence            3789999999999999999999887632211111122 2245799999999998888   9999987  55542  11  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                            .....+.. +.+.++.. ++....++.  .++..+.++.++++++++.+.|+++ ++....++..|.++|    
T Consensus       285 ------~~~~~~~~-~~~~~~~~~aa~~~al~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~----  350 (427)
T 2w8t_A          285 ------LACRPYIF-TASLPPSVVATATTSIRK--LMTAHEKRERLWSNARALHGGLKAM-GFRLGTETCDSAIVA----  350 (427)
T ss_dssp             ------GTCHHHHS-SCCCCHHHHHHHHHHHHH--HTSCHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEE----
T ss_pred             ------Hhcccccc-cCCCCHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCCCEEE----
Confidence                  11112211 22222222 333222221  1235678899999999999999887 554321442456778    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHHHhh
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRITFAV--EPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~~~  231 (233)
                           +.++...      +...+.+.|.++||.+.|+..|+.   .+++|++++.  +++++++++++|.+++++...
T Consensus       351 -----~~~~~~~------~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~  417 (427)
T 2w8t_A          351 -----VMLEDQE------QAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV  417 (427)
T ss_dssp             -----EEESSHH------HHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             -----EEECCHH------HHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence                 5553211      233444445566999999987764   4699999996  899999999999999987653

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.78  E-value=2.5e-19  Score=158.61  Aligned_cols=199  Identities=14%  Similarity=0.093  Sum_probs=116.8

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++||++||+||+|.+|.+.+.. ......+.   ...+.||||.++. |+|+||+++++  ++++.+       
T Consensus       250 ~l~~l~~~~~~llI~DEv~~g~g~~g~~-~a~~~~~~---~pdi~t~sK~~~~-G~~~G~~~~~~--~i~~~~-------  315 (453)
T 4ffc_A          250 TLTAWASENGVVFIADEVQTGFARTGAW-FASEHEGI---VPDIVTMAKGIAG-GMPLSAVTGRA--ELMDAV-------  315 (453)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTTTSSS-STHHHHTC---CCSEEEECGGGGT-TSSCEEEEEEH--HHHTTS-------
T ss_pred             HHHHHHHHcCCEEEEecCccCCCccccc-chhhhcCC---CcchHhhhhhhcC-CcCeEEEEECH--HHHhhh-------
Confidence            6899999999999999999998766532 11111221   2224589999876 99999999987  444321       


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                          .......+++.++..++++++.+ +.. .++..++.++.....++.+.+.+++++.+.. ..+. |.|+|      
T Consensus       316 ----~~~~~~~t~~~~~~~~aaa~aal-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~-g~~~~------  382 (453)
T 4ffc_A          316 ----YAGGLGGTYGGNPVTCAAAVAAL-GVMRELDLPARARAIEASVTSRLSALAEEVDIIGE-VRGR-GAMLA------  382 (453)
T ss_dssp             ----CTTSSCCSSSSCHHHHHHHHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEE-EEEE-TTEEE------
T ss_pred             ----cccCcCCCCCcCHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEE-EEee-ceEEE------
Confidence                12222233444444443444443 211 1233344444444444444444445554432 3333 55666      


Q ss_pred             ccccccccccc-CCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHHhhc
Q 047983          161 KCLLKLNYSLL-EGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRHAKK  232 (233)
Q Consensus       161 ~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~~~  232 (233)
                         +.+..... .+.......+.+.+.++||.+.|+..|+  +++|+++.  .+++++++++++|.+++++..++
T Consensus       383 ---~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~--~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~  452 (453)
T 4ffc_A          383 ---IEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFG--NVIRLLPPLVIGDDLLDEGITALSDIIRAKASH  452 (453)
T ss_dssp             ---EEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECTTS--CEEEECCCTTCCHHHHHHHHHHHHHHHHHHC--
T ss_pred             ---EEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCCCC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence               33311000 0000123445556668899999987664  68898766  38999999999999999887654

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.77  E-value=4.1e-18  Score=147.15  Aligned_cols=195  Identities=13%  Similarity=0.082  Sum_probs=124.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccC-CccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++|+||+|+...++..........+ ..++.+++.|+||.++  |.+.||+++++  ++++.  +   
T Consensus       195 ~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~--g~~gG~~~~~~--~~~~~--~---  265 (399)
T 3tqx_A          195 KSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALG--GASGGYTSGHK--EIIEW--L---  265 (399)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSC--SSCCEEEEECH--HHHHH--H---
T ss_pred             HHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcc--cCceEEEEcCH--HHHHH--H---
Confidence            3799999999999999999974333332221122222 1245699999999987  34449999987  44421  1   


Q ss_pred             hhhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                            .........+.+.+... .+....++ ...++.++.++.++++++++.+.|+++ ++.. .++. |.++|    
T Consensus       266 ------~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~-~~~~~----  331 (399)
T 3tqx_A          266 ------RNRSRPYLFSNTVAPVIVATSLKVLE-LLKTEGPQLRKQLQENSRYFRAGMEKL-GFQL-VPGN-HPIIP----  331 (399)
T ss_dssp             ------HHHCHHHHSSCCCCHHHHHHHHHHHH-HHHHTHHHHHHHHHHHHHHHHHHHHHH-TCCB-CCCS-SSEEE----
T ss_pred             ------HHhCcceeccCCCcHHHHHHHHHHHH-HHhhccHHHHHHHHHHHHHHHHHHHHc-CCCc-CCCC-CCEEE----
Confidence                  11111111222233322 22222222 122668899999999999999999887 5543 3444 55667    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC-C--CCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG-L--KDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~--~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                           +.++...     +..++..+ |.++||.+.|+..+. .  .+++|++++  .+++++++++++|.+++++.
T Consensus       332 -----~~~~~~~-----~~~~~~~~-l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  396 (399)
T 3tqx_A          332 -----VMLGDAQ-----LATNMADH-LLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL  396 (399)
T ss_dssp             -----EEEECHH-----HHHHHHHH-HHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             -----EEeCCHH-----HHHHHHHH-HHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence                 4444211     13444444 556799999865543 2  469999998  48999999999999998765

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.77  E-value=7.3e-19  Score=153.54  Aligned_cols=194  Identities=17%  Similarity=0.116  Sum_probs=113.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|++|.+++.. ..+...   +..+.+.||||.++. |+|+||+++++  ++++.+      
T Consensus       223 ~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~---~~~~di~s~sK~~~~-GlriG~~~~~~--~~~~~l------  289 (426)
T 1sff_A          223 QRLRALCDEHGIMLIADEVQSGAGRTGTL-FAMEQM---GVAPDLTTFAKSIAG-GFPLAGVTGRA--EVMDAV------  289 (426)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTTTSSS-SGGGGT---TSCCSEEEECGGGGT-SSCCEEEEEEH--HHHTTS------
T ss_pred             HHHHHHHHHcCCEEEEechhhccCcccch-hhhhhc---CCCCCEEEEcccccC-CCceEEEEEcH--HHHhhh------
Confidence            36899999999999999999998766532 122111   222334599999887 99999999987  444321      


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEEEe
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~~  156 (233)
                           .......+++.++..+.++.+. ++...+   ....+.++++++.+.+.|++    ++.+. ...+. |+|+|  
T Consensus       290 -----~~~~~~~~~~~~~~~~~a~~aa-l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~-g~~~~--  356 (426)
T 1sff_A          290 -----APGGLGGTYAGNPIACVAALEV-LKVFEQ---ENLLQKANDLGQKLKDGLLAIAEKHPEIG-DVRGL-GAMIA--  356 (426)
T ss_dssp             -----CTTSBCCSSSSCHHHHHHHHHH-HHHHHH---TTHHHHHHHHHHHHHHHHHHHHHTCTTEE-EEEEE-TTEEE--
T ss_pred             -----ccCCcCcCCCCCHHHHHHHHHH-HHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCeE-EEEEE-EEEEE--
Confidence                 1111112223333333233322 221111   12334455555555555543    33222 13454 67888  


Q ss_pred             cCCCccccccccccc---CCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHHh
Q 047983          157 GSEDKCLLKLNYSLL---EGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~  230 (233)
                             +.++....   +.. .+...+...|.++||.+.||+.|  .+++|++++  .+++++++++++|.+++++.+
T Consensus       357 -------~~~~~~~~~~~~~~-~~~~~l~~~l~~~gi~v~~~~~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~  425 (426)
T 1sff_A          357 -------IELFEDGDHNKPDA-KLTAEIVARARDKGLILLSCGPY--YNVLRILVPLTIEDAQIRQGLEIISQCFDEAK  425 (426)
T ss_dssp             -------EEEBGGGCTTSBCH-HHHHHHHHHHHHTTEECEEESTT--SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             -------EEEecCccccCCCh-HHHHHHHHHHHHCCcEEecCCCC--CCEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence                   44421000   000 02333444455779999998765  489999986  489999999999999987753

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.77  E-value=4.1e-18  Score=149.37  Aligned_cols=195  Identities=12%  Similarity=0.088  Sum_probs=113.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcccccccc-CCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVF-GSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|+++|++||++||+||+|.+|.+++.. ..+... +...+   +.+|||.++. | +|+||+++++  +++        
T Consensus       216 ~l~~l~~~~~~~li~DEv~~~~~~~g~~-~~~~~~~~~~~d---i~t~sK~l~~-G~~r~G~~~~~~--~i~--------  280 (430)
T 3i4j_A          216 RVRDICDEAGIIFIADEVMSGMGRCGSP-LALSRWSGVTPD---IAVLGKGLAA-GYAPLAGLLAAP--QVY--------  280 (430)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTTTSSS-SGGGGTTTCCCS---EEEECGGGTT-TSSCCEEEEECH--HHH--------
T ss_pred             HHHHHHHHcCCEEEEechhhCCCcccch-hhhhhhcCCCCc---EEEEcccccC-CccccEEEEECH--HHH--------
Confidence            6899999999999999999998776632 222222 22223   3378999885 9 9999999987  344        


Q ss_pred             hhhhhHHhhhh-------hhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccE
Q 047983           80 HSISLNMRMDD-------YLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSM  151 (233)
Q Consensus        80 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~  151 (233)
                            ..+..       ..+++.++..+.++++.+ +.. .+++.+..++..+..++.+.+.+++++.+.. .++.|. 
T Consensus       281 ------~~~~~~~~~~~~~~t~~~~~~~~aaa~aal-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~g~-  351 (430)
T 3i4j_A          281 ------ETVMGGSGAFMHGFTYAGHPVSVAAGLSVL-DIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQ-VRGTGL-  351 (430)
T ss_dssp             ------HHHHHTTCBCCCCCTTTTCHHHHHHHHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEE-EEEETT-
T ss_pred             ------HHHhccCCcccccCCCCCCHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCeEE-EEEEEE-
Confidence                  33321       122333333333444444 211 2234455555555555555555555655543 455544 


Q ss_pred             EEEEecCCCcccccccccccC-CC--CChHHHHHHHHhccCEEEECCcccC-C--CCcEEEEee--cCHHHHHHHHHHHH
Q 047983          152 FVMYCGSEDKCLLKLNYSLLE-GI--NSDTEFALKLAKEESIIVLPGITVG-L--KDWLRITFA--VEPSAFEIGLGRMK  223 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~ll~~~gi~v~pg~~f~-~--~~~~Rl~~~--~~~~~l~~~~~~l~  223 (233)
                      |+|         +.+...... ..  .+....+.+.|.++||.+.|+..+. +  .+++|++++  .+++++++++++|.
T Consensus       352 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~  422 (430)
T 3i4j_A          352 LLG---------VVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLA  422 (430)
T ss_dssp             EEE---------EEEC------------CHHHHHHHHHHTTEECC-----------CEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             EEE---------EEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            555         332210000 00  0112344555558899999984322 2  578999988  48999999999999


Q ss_pred             HHHHHH
Q 047983          224 AFYYRH  229 (233)
Q Consensus       224 ~~l~~~  229 (233)
                      +++++.
T Consensus       423 ~~l~~~  428 (430)
T 3i4j_A          423 GALEDV  428 (430)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999865

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.77  E-value=8.8e-18  Score=145.60  Aligned_cols=191  Identities=14%  Similarity=0.136  Sum_probs=129.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCc-cccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGH-LVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|+||+|+. +.+.+.....+   .  ...+++.|+||  +++|.|+||++++++ .++        
T Consensus       181 ~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~---~--~~di~~~s~sK--~l~g~~~G~~~~~~~-~~~--------  244 (407)
T 2dkj_A          181 KAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPL---P--YAHVVTSTTHK--TLRGPRGGLILSNDP-ELG--------  244 (407)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCT---T--TCSEEEEESSG--GGCCCSCEEEEESCH-HHH--------
T ss_pred             HHHHHHHHHcCCEEEEEccccccccccCccCCcc---c--cccEEEEeccc--cCCCCCceEEEECCH-HHH--------
Confidence            3789999999999999999998 65554322111   1  24688999999  456889999999831 333        


Q ss_pred             hhhhhHHhhhhhh-hhccCcchH--HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           80 HSISLNMRMDDYL-LLSESVYTT--VGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        80 ~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                            ..+.... ....+.+.+  ..++...++.....++++.++.++++++++.+.|+++ ++..+.++.+++++|  
T Consensus       245 ------~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~--  315 (407)
T 2dkj_A          245 ------KRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGTDNHLFL--  315 (407)
T ss_dssp             ------HHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEE--
T ss_pred             ------HHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCCCCceEEE--
Confidence                  2222221 122222222  2233333332223577889999999999999999887 555433345788888  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCccc----C--CCCcEEEEee------cCHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITV----G--LKDWLRITFA------VEPSAFEIGLGRMKA  224 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f----~--~~~~~Rl~~~------~~~~~l~~~~~~l~~  224 (233)
                             +.++..   +.  +...+.+.|.++||.+.||..|    +  ..+++|+++.      .+++++++++++|.+
T Consensus       316 -------~~~~~~---~~--~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~  383 (407)
T 2dkj_A          316 -------VDLRPK---GL--TGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDR  383 (407)
T ss_dssp             -------EECGGG---TC--CHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHH
T ss_pred             -------EECccc---CC--CHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHH
Confidence                   555421   11  3444555667899999998764    2  2578999995      578899999999999


Q ss_pred             HHHH
Q 047983          225 FYYR  228 (233)
Q Consensus       225 ~l~~  228 (233)
                      ++++
T Consensus       384 ~~~~  387 (407)
T 2dkj_A          384 ALLE  387 (407)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9877

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.77  E-value=5.4e-18  Score=146.89  Aligned_cols=193  Identities=13%  Similarity=0.098  Sum_probs=127.3

Q ss_pred             ChHHHHHHHcCcEEEEccccC-cccc-CCCccccccccCCccCEEEEccCcccc-CCCCceEEEEEecCCCccccccchh
Q 047983            1 FCIEETTKKLGIMVIADEVYG-HLVF-GNTHFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~-~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++|+++|++||+++|+||+|+ ++.+ ++....+...+.+ +..+++.|+||.+ +.+|   ||+++++  ++++.  + 
T Consensus       197 ~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~~~g---G~~~~~~--~~~~~--l-  267 (401)
T 1fc4_A          197 KGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMG-RVDIITGTLGKALGGASG---GYTAARK--EVVEW--L-  267 (401)
T ss_dssp             HHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTT-CCSEEEEESSSTTCSSSC---EEEEECH--HHHHH--H-
T ss_pred             HHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCc-CCcEEEecchhhccCCCC---EEEEcCH--HHHHH--H-
Confidence            378999999999999999996 7763 3433222222333 4569999999998 7776   9999976  44421  1 


Q ss_pred             hhhhhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           78 FFHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                              .........+.+.+... .+....++. . +..++.++.++++++++.+.|+++ ++.. . |.++.++|  
T Consensus       268 --------~~~~~~~~~~~~~~~~~~~a~~~~l~~-~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~-~~~~~~~~--  332 (401)
T 1fc4_A          268 --------RQRSRPYLFSNSLAPAIVAASIKVLEM-V-EAGSELRDRLWANARQFREQMSAA-GFTL-A-GADHAIIP--  332 (401)
T ss_dssp             --------HHHCHHHHHSCCCCHHHHHHHHHHHHH-H-HTCHHHHHHHHHHHHHHHHHHHHT-TCCB-C-CSSSSEEE--
T ss_pred             --------HHhCcCceeCCCCCHHHHHHHHHHHHH-H-hcCHHHHHHHHHHHHHHHHHHHHc-CCcc-c-CCCCCEEE--
Confidence                    11111111122233332 222222221 1 124678889999999999999887 5553 3 56778888  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEEee--cCHHHHHHHHHHHHHHHHHHh
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRITFA--VEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~  230 (233)
                             +.++...      +...+.+.|.++||.+.||..|+.   .+++|++++  .+++++++++++|.+++++..
T Consensus       333 -------~~~~~~~------~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  398 (401)
T 1fc4_A          333 -------VMLGDAV------VAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLG  398 (401)
T ss_dssp             -------EEEECHH------HHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             -------EEcCChH------HHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence                   5553211      334444555667999999987764   468999998  489999999999999988753

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.76  E-value=1.8e-18  Score=152.94  Aligned_cols=195  Identities=16%  Similarity=0.056  Sum_probs=113.7

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++||++||+||+|.+|.+++.. ..+...+....   +.||||.++. |+|+||+++++  ++++.+       
T Consensus       252 ~l~~l~~~~g~~lI~DEv~~g~g~~g~~-~~~~~~~~~pd---i~t~sK~l~~-G~~iG~v~~~~--~~~~~~-------  317 (451)
T 3oks_A          252 TLLDWCRKNDVVFIADEVQTGFARTGAM-FACEHEGIDPD---LIVTAKGIAG-GLPLSAVTGRA--EIMDSP-------  317 (451)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTTTSSS-SGGGGGTCCCS---EEEECGGGGT-TSSCEEEEEEH--HHHTCS-------
T ss_pred             HHHHHHHHcCCEEEEEecccCCCccccc-hhhhhcCCCCC---eeeehhhhhC-CcceEEEEECH--HHHhhh-------
Confidence            6899999999999999999998766532 22222222222   3389999876 99999999987  454321       


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                          .......+++.++..++++++.+ +.. .++..++.++.....++.+.+.+++++.+.. ..+. |.++|      
T Consensus       318 ----~~~~~~~t~~~~~~~~aaa~aal-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~-G~~~~------  384 (451)
T 3oks_A          318 ----HVSGLGGTYGGNPIACAAALATI-ETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGD-VRGR-GAMIA------  384 (451)
T ss_dssp             ----CTTSBCCSSSSCHHHHHHHHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEE-EEEE-TTEEE------
T ss_pred             ----cCCCcCCCCCCCHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEE-EEEe-eEEEE------
Confidence                12222233444444443444443 211 1223333444444444444444444554432 3343 55666      


Q ss_pred             ccccccccccc-CCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLL-EGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       161 ~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~  228 (233)
                         +.+..... .+.......+.+.+.++||.+.|+..|+  +++|+++.  .+++++++++++|.+++++
T Consensus       385 ---~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~--~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  450 (451)
T 3oks_A          385 ---MELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYG--NVVRFLPPLSIGDDLLNEGLDVLEEVLRG  450 (451)
T ss_dssp             ---EEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECTTS--CEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred             ---EEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCCCC--CEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence               32211000 0000134445556668899999987665  68899766  3899999999999998863

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.76  E-value=4.9e-18  Score=147.27  Aligned_cols=195  Identities=15%  Similarity=0.128  Sum_probs=124.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++|+||+|+...++......+...+. ....++++|+||.|+++|   ||+++++  ++++.   +  
T Consensus       198 ~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G---G~~~~~~--~~~~~---l--  267 (401)
T 2bwn_A          198 KEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAASA--RMVDA---V--  267 (401)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEECH--HHHHH---H--
T ss_pred             HHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC---CEEecCH--HHHHH---H--
Confidence            37899999999999999999965554322111111221 134689999999999999   9999976  34321   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                            ........++.+.++.. .++...++......+++.++.++++++++.+.|+++ ++.. ..|.++ ++|    
T Consensus       268 ------~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~-~~~----  334 (401)
T 2bwn_A          268 ------RSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPI-IDHGSH-IVP----  334 (401)
T ss_dssp             ------HHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCB-CCCSSS-CEE----
T ss_pred             ------HHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCcc-cCCCCC-eEE----
Confidence                  11111112222223322 222222221111234678889999999999999887 5554 456665 677    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRITFAV--EPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~  228 (233)
                           +.++...     +..++..++++++||.+.|+..|+.   .+++|++++.  +++++++++++|.+++++
T Consensus       335 -----~~~~~~~-----~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~  399 (401)
T 2bwn_A          335 -----VVIGDPV-----HTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWAR  399 (401)
T ss_dssp             -----EECCCHH-----HHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred             -----EEeCChH-----HHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence                 4443111     1334455555688999999887764   2689999994  899999999999988764

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.75  E-value=3.5e-18  Score=150.19  Aligned_cols=193  Identities=14%  Similarity=0.117  Sum_probs=110.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++||++||+||+|++|..++.. ..+...+...+++   |+||.++ +|+|+||+++++  .+++.  +     
T Consensus       226 ~l~~l~~~~~~~li~DE~~~g~g~~g~~-~~~~~~~~~~di~---s~sK~~~-~G~riG~~~~~~--~~~~~--~-----  291 (439)
T 3dxv_A          226 KFADICRAHGILVVCDEVKVGLARSGRL-HCFEHEGFVPDIL---VLGKGLG-GGLPLSAVIAPA--EILDC--A-----  291 (439)
T ss_dssp             HHHHHHHHTTCEEEEECTTTCTTTTSSS-SGGGGTTCCCSEE---EECGGGG-TTSCCEEEEEEH--HHHTS--C-----
T ss_pred             HHHHHHHHcCCEEEEeccccCCCcCchh-hHHHhcCCCCCEE---EEcchhc-CCcceEEEEECH--HHHhh--h-----
Confidence            6899999999999999999987655531 2222222223333   9999988 599999999987  44432  1     


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhh----cCCCcccccCCCccEEEEEec
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLK----EIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~g~~~~~~~  157 (233)
                          .......++ .++..+.++.+.+ +...+   ....+.++++++.+.+.|+    .++.... .++. |.|+|   
T Consensus       292 ----~~~~~~~t~-~~~~~~~aa~aal-~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~-g~~~~---  357 (439)
T 3dxv_A          292 ----SAFAMQTLH-GNPISAAAGLAVL-ETIDR---DDLPAMAERKGRLLRDGLSELAKRHPLIGD-IRGR-GLACG---  357 (439)
T ss_dssp             ----SSSSCCTTT-TCHHHHHHHHHHH-HHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEE-EEEE-TTEEE---
T ss_pred             ----cCCCcCCCc-ccHHHHHHHHHHH-HHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCeEE-EEEE-EEEEE---
Confidence                111112223 3333332444443 21111   2233344444444444443    3444432 3444 55566   


Q ss_pred             CCCcccccccccccC--CCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHHh
Q 047983          158 SEDKCLLKLNYSLLE--GINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~  230 (233)
                            +.+......  +.......+.+.|.++||.+.|+..+  .+++|+++.  .+++++++++++|.+++++..
T Consensus       358 ------~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~  426 (439)
T 3dxv_A          358 ------MELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMN--GNVLEFTPPLTITETDIHKALDLLDRAFSELS  426 (439)
T ss_dssp             ------EEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTT--SCEEEECCCTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred             ------EEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence                  322100000  00012334444555679999998543  489999765  489999999999999998763

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.75  E-value=7.2e-18  Score=149.39  Aligned_cols=211  Identities=13%  Similarity=0.021  Sum_probs=120.8

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++||++||+||+|++|.+.+... .....+....   +.+|||.++..++|+||+++++  ++++.  +.. . 
T Consensus       246 ~l~~l~~~~~~llI~DEv~~g~gr~g~~~-~~~~~~~~pd---i~t~sK~l~gG~~~lg~v~~~~--~i~~~--~~~-~-  315 (460)
T 3gju_A          246 KIQAVLKKYDVLLVADEVVTGFGRLGTMF-GSDHYGIKPD---LITIAKGLTSAYAPLSGVIVAD--RVWQV--LVQ-G-  315 (460)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTTTSSSC-HHHHHTCCCS---EEEECGGGTTTSSCCEEEEEEH--HHHHH--HHH-H-
T ss_pred             HHHHHHHHcCCEEEEeccccCCCcccccc-hHhhcCCCCC---eeeeehhhcCCCCCeEEEEECH--HHHHH--Hhc-c-
Confidence            68999999999999999999987665321 1222222222   3478999655338999999987  34421  100 0 


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                      ......+....+++.++..++++++.+ +.. .++..++.++.....++.+.+.+++++.+.. ..+.|.++.+.+. ++
T Consensus       316 ~~~~~~~~~~~t~~~~~~~~aaa~aal-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~g~~~~~~~~-~~  392 (460)
T 3gju_A          316 SDKLGSLGHGWTYSAHPICVAAGVANL-ELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGE-VRGDGMLAAVEFV-AD  392 (460)
T ss_dssp             HHHHCSCSCCCTTTTCHHHHHHHHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEE-EEEETTEEEEEEC-SB
T ss_pred             cccccccccCCCCCCCHHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEE-EeeeeEEEEEEEc-cC
Confidence            000000011123333333333444443 221 2345666667777777777777777655543 4555554443111 11


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHHhhc
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRHAKK  232 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~~~  232 (233)
                      ..+ ..++..   .......+.+.|.++||.+.|++   ..+++|++..  .+++++++++++|.+++++..++
T Consensus       393 ~~~-~~~~~~---~~~~~~~~~~~l~~~Gv~v~~~~---~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~  459 (460)
T 3gju_A          393 KDD-RVFFDA---SQKIGPQVATALAASGVIGRAMP---QGDILGFAPPLCLTREQADIVVSKTADAVKSVFAN  459 (460)
T ss_dssp             TTT-TBCCCG---GGCHHHHHHHHHHHTTEECEECS---SSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ccc-cccccc---hHHHHHHHHHHHHHCCeEEecCC---CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            000 000000   00123445555667899999976   3589999944  58999999999999999887643

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.75  E-value=4.3e-17  Score=141.85  Aligned_cols=191  Identities=11%  Similarity=0.031  Sum_probs=124.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||++||+||+|+...++..........+. .+..|++.|+||.++.+|   ||+++++  .+++.   +  
T Consensus       206 ~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~g---g~v~~~~--~~~~~---~--  275 (409)
T 3kki_A          206 AELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYRA---GAIWCNN--EVNRC---V--  275 (409)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEESS--SGGGT---H--
T ss_pred             HHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCCc---eEEEECH--HHHHH---H--
Confidence            37999999999999999999986554322111111221 244588999999998876   9999988  45431   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           80 HSISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                            ........++.+.++..  ++.+++ +  ..+..++.++.++++++++.+.|+++ ++..  . .++.++|   
T Consensus       276 ------~~~~~~~~~~~~~~~~~~aa~~aal-~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~--~-~~~~~~~---  339 (409)
T 3kki_A          276 ------PFISYPAIFSSTLLPYEAAGLETTL-E--IIESADNRRQHLDRMARKLRIGLSQL-GLTI--R-SESQIIG---  339 (409)
T ss_dssp             ------HHHCHHHHHSBCCCHHHHHHHHHHH-H--HHHHCHHHHHHHHHHHHHHHHHHHTT-TCCC--C-CSSSEEE---
T ss_pred             ------HHhCcCccccCCCcHHHHHHHHHHH-H--HHhcCHHHHHHHHHHHHHHHHHHHHc-CCcc--C-CCCCEEE---
Confidence                  12111122232333332  333333 1  12223678889999999999999987 4443  2 4677888   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                            +.++...     +..++..+ |.++||.+.|+..+..   .+++|+++..  +++++++++++|.+++++.
T Consensus       340 ------~~~~~~~-----~~~~~~~~-L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~  404 (409)
T 3kki_A          340 ------LETGDER-----NTEKVRDY-LESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYG  404 (409)
T ss_dssp             ------EEEESHH-----HHHHHHHH-HHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             ------EEeCCHH-----HHHHHHHH-HHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhcC
Confidence                  5554321     13344444 5566999988554322   5799999984  8999999999999998763

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.75  E-value=3.7e-17  Score=141.22  Aligned_cols=199  Identities=13%  Similarity=0.057  Sum_probs=127.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||+++|+||+|+....    +..+   ...++.+++.|+||.++.+|  +||+++++  ++++.+.-.. +
T Consensus       184 ~~i~~l~~~~~~~li~D~~~~~g~~----~~~~---~~~~~d~~~~s~~K~~g~~G--~G~~~~~~--~~~~~~~~~~-~  251 (406)
T 1kmj_A          184 AEMITLAHQHGAKVLVDGAQAVMHH----PVDV---QALDCDFYVFSGHKLYGPTG--IGILYVKE--ALLQEMPPWE-G  251 (406)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTS----CCCH---HHHTCSEEEEEGGGTTSCTT--CEEEEECH--HHHHHCCCSS-C
T ss_pred             HHHHHHHHHcCCEEEEEchhhcCCC----CCcc---cccCCCEEEEEchhccCCCC--cEEEEEeH--HHHhhcCCcc-c
Confidence            3789999999999999999986321    1122   22245689999999998888  89999986  4443211100 0


Q ss_pred             hhhhHHhh-hh--------hhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC--
Q 047983           81 SISLNMRM-DD--------YLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKP--  147 (233)
Q Consensus        81 ~~~~~~~~-~~--------~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--  147 (233)
                      .-...... ..        ...+..+.++..  .++...++...+.++++.++.++++++++.+.|++++++.. ..|  
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~  330 (406)
T 1kmj_A          252 GGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTL-YGPQN  330 (406)
T ss_dssp             STTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEE-ESCTT
T ss_pred             CCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEE-ecCCC
Confidence            00000000 00        001111222222  33423332222345778889999999999999998877664 456  


Q ss_pred             CccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCccc--------CCCCcEEEEeec--CHHHHHH
Q 047983          148 EGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITV--------GLKDWLRITFAV--EPSAFEI  217 (233)
Q Consensus       148 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f--------~~~~~~Rl~~~~--~~~~l~~  217 (233)
                      .++++.|         . ++     +. +..+ +.+.|.++||.+.||..|        +..+++|++++.  +++++++
T Consensus       331 ~~~~~~~---------~-~~-----~~-~~~~-~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~  393 (406)
T 1kmj_A          331 RLGVIAF---------N-LG-----KH-HAYD-VGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDR  393 (406)
T ss_dssp             CCSEEEE---------E-ET-----TC-CHHH-HHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHH
T ss_pred             cCCEEEE---------E-EC-----CC-CHHH-HHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHH
Confidence            6777776         1 22     11 2334 446677889999998753        346899999996  8899999


Q ss_pred             HHHHHHHHHHHH
Q 047983          218 GLGRMKAFYYRH  229 (233)
Q Consensus       218 ~~~~l~~~l~~~  229 (233)
                      +++.|.++++..
T Consensus       394 ~~~~l~~~~~~l  405 (406)
T 1kmj_A          394 LVTGLQRIHRLL  405 (406)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999888653

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.74  E-value=7.4e-18  Score=148.79  Aligned_cols=203  Identities=14%  Similarity=0.130  Sum_probs=113.4

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||++||+||+|.+|.++|... .....+....   +.||||.++. | +|+||+++++  ++++.+.-.   
T Consensus       240 ~l~~l~~~~~~llI~DEv~~g~g~~g~~~-~~~~~~~~~d---i~t~sK~l~~-G~~~ig~~~~~~--~i~~~~~~~---  309 (452)
T 3n5m_A          240 AVHETCQKHGALLISDEVICGFGRTGKAF-GFMNYDVKPD---IITMAKGITS-AYLPLSATAVKR--EIYEAFKGK---  309 (452)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGTTCCCS---EEEECGGGGT-TSSCCEEEEEEH--HHHGGGCSS---
T ss_pred             HHHHHHHHcCCEEEEecchhCCCcccccc-hhhhcCCCCC---EEeecccccC-CCcceEEEEECH--HHHHHHhhc---
Confidence            68999999999999999999987666421 2222222222   3479999876 9 9999999987  444321000   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                        .....+....+++.++..++++++.+ +.. .++..++.++.....++.+.+.+++++.+.. ..+.|.+ ++     
T Consensus       310 --~~~~~~~~~~t~~~~~~~~aaa~aal-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~g~~-~~-----  379 (452)
T 3n5m_A          310 --GEYEFFRHINTFGGNPAACALALKNL-EIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGD-IRGKGLL-VG-----  379 (452)
T ss_dssp             --STTCSCCCCCSSTTCHHHHHHHHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEE-EEESSSC-EE-----
T ss_pred             --cCCCCccccCCCCCCHHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEE-EEEEEEE-EE-----
Confidence              00000011122333333332444443 211 1223344444444444444444445554432 4455554 44     


Q ss_pred             Cccccccccccc--CCCC-ChHHHHHHHHhccCEEEECCcccCC--CCcEEEEee--cCHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLL--EGIN-SDTEFALKLAKEESIIVLPGITVGL--KDWLRITFA--VEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       160 ~~~~~~~~~~~~--~~~~-~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~  228 (233)
                          +.+.....  .... .....+.+.+.++||.+.|+..|..  .+++|++++  .+++++++++++|.+++++
T Consensus       380 ----i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  451 (452)
T 3n5m_A          380 ----IELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMER  451 (452)
T ss_dssp             ----EEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             ----EEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence                22210000  0000 0123455556678999999987654  589999754  5899999999999988753

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.73  E-value=8.1e-18  Score=145.72  Aligned_cols=186  Identities=11%  Similarity=0.103  Sum_probs=111.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++|+||+|.+|...+.. ......+   ....+.|+||.++. |+|+||+++++  +++     +   
T Consensus       203 ~~l~~l~~~~~~~li~Dev~~~~g~~g~~-~~~~~~~---~~~d~~t~sK~~~~-G~~~G~~~~~~--~~~-----~---  267 (395)
T 3nx3_A          203 KALRKLCDEKDILLIADEIQCGMGRSGKF-FAYEHAQ---ILPDIMTSAKALGC-GLSVGAFVINQ--KVA-----S---  267 (395)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTTTSSS-SGGGGGT---CCCSEEEECGGGTT-TSCCEEEEECH--HHH-----H---
T ss_pred             HHHHHHHHHcCCEEEEEecccCCCcCCcc-hhHHhcC---CCCCEEEecccccC-CCceEEEEEch--hhh-----h---
Confidence            36899999999999999999998655532 1121122   12224589999875 99999999987  330     2   


Q ss_pred             hhhhHHhhhh---hhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           81 SISLNMRMDD---YLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                           ..+..   ..+++.++..+.++.+.+ +.. .+++.++.++..+..++.+.+.+..++.+.. .++ .|.|+|  
T Consensus       268 -----~~~~~~~~~~~~~~~~~~~~aa~aal-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~-~g~~~~--  337 (395)
T 3nx3_A          268 -----NSLEAGDHGSTYGGNPLVCAGVNAVF-EIFKEEKILENVNKLTPYLEQSLDELINEFDFCKK-RKG-LGFMQG--  337 (395)
T ss_dssp             -----HHSCTTCCSSCBSCCHHHHHHHHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEE-EEE-ETTEEE--
T ss_pred             -----hhcCCcccCCCCCCCHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEE-EEe-EEEEEE--
Confidence                 22221   122333333332444443 211 2234444444444445555555544554432 233 356777  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~  228 (233)
                             +.++..      .+...+.+.|.++||.+.|++    .+++|+++.  .+++++++++++|.+++++
T Consensus       338 -------~~~~~~------~~~~~~~~~l~~~Gi~v~~~~----~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  394 (395)
T 3nx3_A          338 -------LSLDKS------VKVAKVIQKCQENALLLISCG----ENDLRFLPPLILQKEHIDEMSEKLRKALKS  394 (395)
T ss_dssp             -------EEECTT------SCHHHHHHHHHHTTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             -------EEeCCc------chHHHHHHHHHHCCCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence                   444321      133444555667899999864    589999865  4899999999999998863

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.73  E-value=3.8e-17  Score=144.70  Aligned_cols=204  Identities=11%  Similarity=0.059  Sum_probs=116.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||++||+||+|.+|...|... .....+....   +.+|||.++..|+|+||+++++  ++++.  +..  
T Consensus       243 ~~l~~l~~~~~~llI~DEv~~g~gr~G~~~-~~~~~~~~pd---i~t~sK~l~gg~~~lg~v~~~~--~i~~~--~~~--  312 (459)
T 4a6r_A          243 PEIERICRKYDVLLVADEVICGFGRTGEWF-GHQHFGFQPD---LFTAAKGLSSGYLPIGAVFVGK--RVAEG--LIA--  312 (459)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTTTSSSS-HHHHHTCCCS---EEEECGGGGTTSSCCEEEEECH--HHHHH--HHH--
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCcccccc-hHhhcCCCCC---eeehhhhhcCCCCCccceeeCH--HHHHH--hhc--
Confidence            368999999999999999999987766321 1222222223   3378999777669999999987  44421  100  


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHH-HHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKIT-DILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~-~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                          ...+....+++.++..++++++.+ +.. .++..++.+ +.....++.+.+.|.+++.+.. ..+.|.++.+.+.+
T Consensus       313 ----~~~~~~~~t~~~~~~~~aaa~aal-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~g~~~~~~~~~  386 (459)
T 4a6r_A          313 ----GGDFNHGFTYSGHPVCAAVAHANV-AALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDD-VRGVGMVQAFTLVK  386 (459)
T ss_dssp             ----HCTTHHHHHHCSCHHHHHHHHHHH-HHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEE-EEEETTEEEEEECS
T ss_pred             ----CCCcccCCCCCCCHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEE-EEEEEEEEEEEEec
Confidence                001122234444444443444444 221 223444444 4444445555455555554443 45555544431111


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEe--ecCHHHHHHHHHHHHHHHHHHh
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITF--AVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~--~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                       +... +.++.   ........+.+.|.++||.+.|+.     +++|++.  ..+++++++++++|.+++++..
T Consensus       387 -~~~~-~~~~~---~~~~~~~~~~~~l~~~Gv~v~~~g-----~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~  450 (459)
T 4a6r_A          387 -NKAK-RELFP---DFGEIGTLCRDIFFRNNLIMRACG-----DHIVSAPPLVMTRAEVDEMLAVAERCLEEFE  450 (459)
T ss_dssp             -BTTT-TBCCS---STTHHHHHHHHHHHHTTEECEEET-----TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             -Cccc-ccccc---chHHHHHHHHHHHHHCCeEEecCC-----CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence             1000 00000   000113444455567799999963     7999994  4599999999999999998764

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.73  E-value=4.6e-17  Score=139.63  Aligned_cols=190  Identities=13%  Similarity=0.041  Sum_probs=119.7

Q ss_pred             ChHHHHHHHcC--cEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCcc-ccccchh
Q 047983            1 FCIEETTKKLG--IMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI-LQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~~~--~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~-~~~~~~~   77 (233)
                      ++|+++|++||  ++||+||+|+.   +. .+.++   ...+..+++.|+||.++.+|  +||+++++  ++ +.  ...
T Consensus       159 ~~i~~l~~~~~~~~~li~Dea~~~---~~-~~~~~---~~~~~di~~~s~sK~~g~~G--~G~~~~~~--~~~~~--~~~  225 (384)
T 1eg5_A          159 EDVTRIVKKKNKETLVHVDAVQTI---GK-IPFSL---EKLEVDYASFSAHKFHGPKG--VGITYIRK--GVPIR--PLI  225 (384)
T ss_dssp             HHHHHHHHHHCTTCEEEEECTTTT---TT-SCCCC---TTTCCSEEEEEGGGGTSCTT--CEEEEECT--TSCCC--CSB
T ss_pred             HHHHHHHHhcCCceEEEEEhhhhc---CC-cccCc---hhcCCCEEEecHHHhcCCCc--eEEEEEcC--CCccc--ccc
Confidence            37899999999  99999999982   22 12222   22245689999999988888  79999987  33 11  111


Q ss_pred             hhhhhhhHHhh---hhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCc--cEE
Q 047983           78 FFHSISLNMRM---DDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEG--SMF  152 (233)
Q Consensus        78 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--g~~  152 (233)
                              ...   ......+.+...+ .++...++. ..+++++.++.++++++++.+.|++. ++....++.+  +.+
T Consensus       226 --------~~~~~~~~~~~~~~~~~~~-~a~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~  294 (384)
T 1eg5_A          226 --------HGGGQERGLRSGTQNVPGI-VGAARAMEI-AVEELSEAAKHMEKLRSKLVSGLMNL-GAHIITPLEISLPNT  294 (384)
T ss_dssp             --------CSSCTTTTTBCSCCCHHHH-HHHHHHHHH-HHHTHHHHHHHHHHHHHHHHHHHHTT-TCEECSCTTSBCTTE
T ss_pred             --------ccCcccccccCCCCChHHH-HHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHhCCC-CeEEeCCcccCCCCE
Confidence                    110   0111122222222 333333432 34578889999999999999999883 5554222222  234


Q ss_pred             EEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-------------------CCcEEEEee--cC
Q 047983          153 VMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-------------------KDWLRITFA--VE  211 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------~~~~Rl~~~--~~  211 (233)
                      ++         +.++     +. +..++ .+.|.++||.+.||+.|+.                   .+++|++++  .+
T Consensus       295 ~~---------~~~~-----~~-~~~~~-~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~  358 (384)
T 1eg5_A          295 LS---------VSFP-----NI-RGSTL-QNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNT  358 (384)
T ss_dssp             EE---------EECT-----TC-CHHHH-HHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCC
T ss_pred             EE---------EEeC-----CC-CHHHH-HHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCC
Confidence            44         3232     11 24444 4556788999999987753                   368999999  48


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 047983          212 PSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       212 ~~~l~~~~~~l~~~l~~~~  230 (233)
                      ++++++++++|.+++++.+
T Consensus       359 ~~~i~~~~~~l~~~~~~~~  377 (384)
T 1eg5_A          359 EEEVDYFLKKIEEILSFLD  377 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998764

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.73  E-value=2.1e-17  Score=142.32  Aligned_cols=187  Identities=14%  Similarity=0.075  Sum_probs=121.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|+.+.++.........++. ...++++|+||.++.+|   ||+++++  ++++        
T Consensus       188 ~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~di~~~s~sK~~~~~G---G~~~~~~--~~~~--------  253 (384)
T 1bs0_A          188 AEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV-KPELLVVTFGKGFGVSG---AAVLCSS--TVAD--------  253 (384)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTC-CCSEEEEESSSTTSSCC---EEEEECH--HHHH--------
T ss_pred             HHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCC-CCcEEEeeccchhhccC---cEEEeCH--HHHH--------
Confidence            37899999999999999999987653111111122222 22389999999999888   9999976  3442        


Q ss_pred             hhhhHHhhhhh---hhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           81 SISLNMRMDDY---LLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                            .+...   ...+.+.++.. .+..+.++...+.+.++.++.++++++++.+.|+++ ++.. . +.++.++|  
T Consensus       254 ------~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~-~~~~~~~~--  322 (384)
T 1bs0_A          254 ------YLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFTL-A-DSCSAIQP--  322 (384)
T ss_dssp             ------HHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEE-C-SCCSSBCC--
T ss_pred             ------HHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-CCcc-c-CCCCCEEE--
Confidence                  22221   11121233332 222222221111166788999999999999999887 4543 3 35566777  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC---CCcEEEEeec--CHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL---KDWLRITFAV--EPSAFEIGLGRMKAF  225 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~Rl~~~~--~~~~l~~~~~~l~~~  225 (233)
                             +.++...      +...+.+.|.++||.+.||+.|+.   .+++|++++.  +++++++++++|.++
T Consensus       323 -------~~~~~~~------~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          323 -------LIVGDNS------RALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             -------EEEESHH------HHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             -------EEeCCHH------HHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence                   4443111      333444455566999999988763   4799999985  789999999998764

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.73  E-value=1.6e-17  Score=145.68  Aligned_cols=192  Identities=14%  Similarity=0.088  Sum_probs=114.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|++|.+.+.. ..+...+...+   +.|+||.++. |+|+||+++++  +++         
T Consensus       227 ~~l~~l~~~~~~~li~DEv~~~~g~~g~~-~~~~~~~~~~d---i~s~sK~~~~-G~~ig~~~~~~--~~~---------  290 (433)
T 1zod_A          227 AALKRKCEARGMLLILDEAQTGVGRTGTM-FACQRDGVTPD---ILTLSKTLGA-GLPLAAIVTSA--AIE---------  290 (433)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTTTSSS-STHHHHTCCCS---EEEECHHHHT-TSSCEEEEECH--HHH---------
T ss_pred             HHHHHHHHHhCCEEEEeccccCCCcCchH-hHHhhcCCCCC---EEEecccccC-CCCeeEEEEhH--HHH---------
Confidence            36899999999999999999998665532 11211222222   3489999886 99999999987  344         


Q ss_pred             hhhhHHhhhh---h--hhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccE
Q 047983           81 SISLNMRMDD---Y--LLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSM  151 (233)
Q Consensus        81 ~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~  151 (233)
                           ..+..   .  .+++.++..+.++.+.+ +...+   ....+.++++++.+.+.|++    ++.+.. .++. |.
T Consensus       291 -----~~~~~~~~~~~~t~~~~~~~~~a~~aal-~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~-~~~~-g~  359 (433)
T 1zod_A          291 -----ERAHELGYLFYTTHVSDPLPAAVGLRVL-DVVQR---DGLVARANVMGDRLRRGLLDLMERFDCIGD-VRGR-GL  359 (433)
T ss_dssp             -----HHHHHTTCCCCCTTTTCHHHHHHHHHHH-HHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEE-EEEE-TT
T ss_pred             -----HhhccCCCCCCCCCCcCHHHHHHHHHHH-HHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCCeEE-EEEE-EE
Confidence                 22221   1  22333333332333333 21111   12345555556666655544    333322 3344 55


Q ss_pred             EEEEecCCCcccccccccc---cCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHH
Q 047983          152 FVMYCGSEDKCLLKLNYSL---LEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l  226 (233)
                      |+|         +.++...   .+.. .....+.+.|.++||.+.||..|+.++++|+++.  .+++++++++++|.+++
T Consensus       360 ~~~---------i~~~~~~~~~~~~~-~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l  429 (433)
T 1zod_A          360 LLG---------VEIVKDRRTKEPAD-GLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAI  429 (433)
T ss_dssp             EEE---------EEEEEETTTTEECT-THHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             EEE---------EEEecCccccCCCh-HHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence            667         3332100   0000 1233344445578999999988766689999765  48999999999999988


Q ss_pred             HHH
Q 047983          227 YRH  229 (233)
Q Consensus       227 ~~~  229 (233)
                      ++.
T Consensus       430 ~~~  432 (433)
T 1zod_A          430 ERA  432 (433)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            754

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.72  E-value=4.3e-16  Score=134.28  Aligned_cols=203  Identities=11%  Similarity=-0.002  Sum_probs=126.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccc-cCCCCceEEEEEecCCCccccccchhh-
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKR-WIVPGWRLGWLVTSDPNGILQDLGVAF-   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~R~G~~~~~~~~~~~~~~~~~~-   78 (233)
                      ++|+++|++||+++|+||++..    +..+..   +...+..+++.|+||. ++.+|+  ||+++++  ++++.+.-.+ 
T Consensus       164 ~~i~~~~~~~~~~li~D~a~~~----~~~~~~---~~~~~~d~~~~s~sK~l~g~~G~--G~~~~~~--~~~~~~~~~~~  232 (393)
T 2huf_A          164 EGVGALCHQHNCLLIVDTVASL----GGAPMF---MDRWEIDAMYTGSQKVLGAPPGI--TPVSFSH--RAVERYKRRNT  232 (393)
T ss_dssp             TTHHHHHHHTTCEEEEECTTTB----TTBCCC---TTTTTCSEEECCSSSTTCCCSSC--EEEEECH--HHHHHHHTCSS
T ss_pred             HHHHHHHHHcCCEEEEEccccc----CCCCcc---hhhcCccEEEECCCcccccCCCe--EEEEECH--HHHHHHhhcCC
Confidence            4799999999999999999864    111112   2233466889999996 567887  9999976  4443210000 


Q ss_pred             -hhh-hhhHHhhhhhh------hhcc-CcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC
Q 047983           79 -FHS-ISLNMRMDDYL------LLSE-SVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE  148 (233)
Q Consensus        79 -~~~-~~~~~~~~~~~------~~~~-~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  148 (233)
                       ... .........+.      .... +.+... .++...++......+++.++.++++++++.+.|+++ ++.. ..|.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~  310 (393)
T 2huf_A          233 KVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-GFEL-YADP  310 (393)
T ss_dssp             CCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB-SSCG
T ss_pred             CCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CCee-ccCc
Confidence             000 00000000000      0111 122222 333333322222247788899999999999999887 5554 3442


Q ss_pred             ---ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEe-e--cCHHHHHHHHHHH
Q 047983          149 ---GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITF-A--VEPSAFEIGLGRM  222 (233)
Q Consensus       149 ---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~-~--~~~~~l~~~~~~l  222 (233)
                         +++++|         ++++.    +. +..++..++++++||.+.||..|...+++|+++ +  .+++++++++++|
T Consensus       311 ~~~~~~~~~---------~~~~~----~~-~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l  376 (393)
T 2huf_A          311 KDRLSTVTT---------IKVPQ----GV-DWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVF  376 (393)
T ss_dssp             GGBCTTEEE---------EECCT----TC-CHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred             cccCCcEEE---------EEcCC----CC-CHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHH
Confidence               355777         44431    11 355566566656799999999887789999999 5  3688899999999


Q ss_pred             HHHHHHHh
Q 047983          223 KAFYYRHA  230 (233)
Q Consensus       223 ~~~l~~~~  230 (233)
                      .+++++..
T Consensus       377 ~~~~~~~~  384 (393)
T 2huf_A          377 QEAVAAVK  384 (393)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHcC
Confidence            99998764

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.72  E-value=1.4e-16  Score=138.37  Aligned_cols=201  Identities=12%  Similarity=0.105  Sum_probs=125.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|+....    ...+..   .+..+++.|+||.++.+|  +||+++++  ++++.+.-...+
T Consensus       189 ~~i~~l~~~~~~~li~D~a~~~~~~----~~~~~~---~~~di~~~s~sK~~~~~g--~G~~~~~~--~~~~~~~~~~~~  257 (420)
T 1t3i_A          189 EEIAQLAHQAGAKVLVDACQSAPHY----PLDVQL---IDCDWLVASGHKMCAPTG--IGFLYGKE--EILEAMPPFFGG  257 (420)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTS----CCCHHH---HTCSEEEEEGGGTTSCTT--CEEEEECH--HHHHHSCCCSCS
T ss_pred             HHHHHHHHHcCCEEEEEhhhccCCc----cCchhh---cCCCEEEEehhhhcCCCc--eEEEEEch--HHHhhcCceecC
Confidence            3789999999999999999996432    112222   235689999999988888  99999987  444321110000


Q ss_pred             hhh-----hH-Hhh-hhhhhhccCcchH--HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC---
Q 047983           81 SIS-----LN-MRM-DDYLLLSESVYTT--VGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE---  148 (233)
Q Consensus        81 ~~~-----~~-~~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---  148 (233)
                      ...     .. ..+ .....+..+.++.  ..++...++...+..+++.++.++++++.+.+.|++++++.. ..|.   
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~~~  336 (420)
T 1t3i_A          258 GEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRL-YGPNPKH  336 (420)
T ss_dssp             TTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEE-ESCCGGG
T ss_pred             CCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEE-eCCCccc
Confidence            000     00 000 0000111122222  233332222122234678889999999999999998877664 3443   


Q ss_pred             ---ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCccc--------CCCCcEEEEeec--CHHHH
Q 047983          149 ---GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITV--------GLKDWLRITFAV--EPSAF  215 (233)
Q Consensus       149 ---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f--------~~~~~~Rl~~~~--~~~~l  215 (233)
                         ++++.|          .++  .   .  +...+.+.|.++||.+.||..|        +..+++|+++..  +++++
T Consensus       337 ~~~~~~~~~----------~~~--~---~--~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i  399 (420)
T 1t3i_A          337 GDRAALASF----------NVA--G---L--HASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEI  399 (420)
T ss_dssp             SCBCSEEEE----------EET--T---B--CHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHH
T ss_pred             cccCCEEEE----------EEC--C---C--CHHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCCCHHHH
Confidence               566655          232  1   1  3344556778889999999543        436899999996  89999


Q ss_pred             HHHHHHHHHHHHHHh
Q 047983          216 EIGLGRMKAFYYRHA  230 (233)
Q Consensus       216 ~~~~~~l~~~l~~~~  230 (233)
                      +++++.|.+++++.+
T Consensus       400 ~~~~~~l~~~~~~~~  414 (420)
T 1t3i_A          400 DLFLQSLQATIRFFS  414 (420)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887654

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.72  E-value=5.8e-17  Score=141.77  Aligned_cols=179  Identities=14%  Similarity=0.130  Sum_probs=115.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||++||+||+|.+|.+.+.. ..+...+...+++   ||||.|+. | +|+||+++++  +++ .+  .   
T Consensus       237 ~l~~l~~~~~~~li~DE~~~~~g~~g~~-~~~~~~~~~~d~~---t~sK~~~~-G~~riG~~~~~~--~~~-~~--~---  303 (419)
T 2eo5_A          237 ELQKLAKKYGILLVDDEVQMGLGRTGKL-FAIENFNTVPDVI---TLAKALGG-GIMPIGATIFRK--DLD-FK--P---  303 (419)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTTTSSS-SGGGGGTCCCSEE---EECGGGGT-TTSCCEEEEEEG--GGC-CC------
T ss_pred             HHHHHHHHcCCEEEEeccccCCccCcch-hhHHhcCCCCCEE---EecccccC-CccceEEEEEch--Hhh-cC--C---
Confidence            6899999999999999999998766532 1222222233333   89999885 9 9999999987  333 21  1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                           .  ....+++.++..+.++.+.+ +. .    ++.++.++++++++.+.|+++  +.. ..+. |.|+|      
T Consensus       304 -----~--~~~~t~~~n~~~~~aa~aal-~~-~----~~~~~~~~~~~~~l~~~L~~~--~~~-~~~~-g~~~~------  360 (419)
T 2eo5_A          304 -----G--MHSNTFGGNALACAIGSKVI-DI-V----KDLLPHVNEIGKIFAEELQGL--ADD-VRGI-GLAWG------  360 (419)
T ss_dssp             ------------CCCCCHHHHHHHHHHH-HH-H----HHHHHHHHHHHHHHHHHHTTS--SSE-EEEE-TTEEE------
T ss_pred             -----c--ccCCCCCCCHHHHHHHHHHH-HH-H----HHHHHHHHHHHHHHHHHHHHh--hhh-eEee-eEEEE------
Confidence                 1  11122333333332344443 21 1    127888999999999999876  222 3344 56667      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                         +.+. +.  .  .... +.+.|.++||.+.|++    .+++|++++  .+++++++++++|.+++++.
T Consensus       361 ---i~~~-~~--~--~~~~-~~~~l~~~Gv~v~~~~----~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~  418 (419)
T 2eo5_A          361 ---LEYN-EK--K--VRDR-IIGESFKRGLLLLPAG----RSAIRVIPPLVISEEEAKQGLDILKKVIKVV  418 (419)
T ss_dssp             ---EECS-CH--H--HHHH-HHHHHHHTTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             ---EEEe-cC--c--cHHH-HHHHHHHCCCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence               4441 10  0  1233 4444558899999964    579999765  48999999999999988753

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.71  E-value=7.2e-17  Score=139.72  Aligned_cols=190  Identities=12%  Similarity=0.061  Sum_probs=124.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccC-CCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWI-VPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|+||+|+....+... .+ ..+...+  +++.|+||.++ .+|   ||+++++  +++        
T Consensus       181 ~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~~-~~~~~~d--i~~~s~sK~~~g~~g---G~~~~~~--~~~--------  243 (405)
T 2vi8_A          181 AKFREIADEVGAYLMVDMAHIAGLVAAGL-HP-NPVPYAH--FVTTTTHKTLRGPRG---GMILCQE--QFA--------  243 (405)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTHHHHHTTS-SC-CSTTTCS--EEEEESSSTTCCCSC---EEEEECH--HHH--------
T ss_pred             HHHHHHHHHcCCEEEEEccccccccccCc-CC-CccccCC--EEEEeccccCCCCCC---eEEEEcH--HHH--------
Confidence            37899999999999999999953332211 11 1121212  88999999987 677   9999986  343        


Q ss_pred             hhhhhHHhhhhhh-hhccCc-ch-HHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC-CccEEEEE
Q 047983           80 HSISLNMRMDDYL-LLSESV-YT-TVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKP-EGSMFVMY  155 (233)
Q Consensus        80 ~~~~~~~~~~~~~-~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~g~~~~~  155 (233)
                            ..+.... ....+. +. +..++...++.....++++.++.++++++++.+.|+++ ++.. ..| .+++++| 
T Consensus       244 ------~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~~-  314 (405)
T 2vi8_A          244 ------KQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTL-VSGGTDNHLLL-  314 (405)
T ss_dssp             ------HHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEE-GGGSCSSSEEE-
T ss_pred             ------HHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeE-ecCCCCceEEE-
Confidence                  2222211 111222 22 22343333322223577889999999999999999887 5554 333 4688888 


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcc----cCC--CCcEEEEeec------CHHHHHHHHHHHH
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGIT----VGL--KDWLRITFAV------EPSAFEIGLGRMK  223 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~----f~~--~~~~Rl~~~~------~~~~l~~~~~~l~  223 (233)
                              +.++..   +.  +...+.+.|.++||.+.||+.    ++.  .+++|++++.      +++++++++++|.
T Consensus       315 --------~~~~~~---~~--~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~  381 (405)
T 2vi8_A          315 --------VDLRPQ---QL--TGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIG  381 (405)
T ss_dssp             --------EECGGG---TC--CHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHH
T ss_pred             --------EEccCC---CC--CHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHH
Confidence                    554321   11  344455667788999999862    332  5789999984      7999999999999


Q ss_pred             HHHHHH
Q 047983          224 AFYYRH  229 (233)
Q Consensus       224 ~~l~~~  229 (233)
                      +++++.
T Consensus       382 ~~~~~~  387 (405)
T 2vi8_A          382 LVLKNV  387 (405)
T ss_dssp             HHHTCT
T ss_pred             HHHhcc
Confidence            988654

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.71  E-value=6.3e-16  Score=132.90  Aligned_cols=205  Identities=12%  Similarity=0.033  Sum_probs=126.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCcccc-CCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||++||+||+|+...    ....   ....+..+++.|+||.+ +.+|  +||+++++  ++++.+.-...
T Consensus       168 ~~i~~l~~~~~~~li~De~~~~g~----~~~~---~~~~~~d~~~~s~sK~~~~~~g--~g~~~~~~--~~~~~~~~~~~  236 (393)
T 3kgw_A          168 DGFGELCHRYQCLLLVDSVASLGG----VPIY---MDQQGIDIMYSSSQKVLNAPPG--ISLISFND--KAKYKVYSRKT  236 (393)
T ss_dssp             TTHHHHHHHTTCEEEEECTTTTTT----SCCC---TTTTTCCEEEEESSSTTCCCSS--CEEEEECH--HHHHHHHTCSS
T ss_pred             HHHHHHHHHcCCEEEEECCccccC----cccc---hhhcCCCEEEecCcccccCCCc--eeEEEECH--HHHHHHhccCC
Confidence            579999999999999999988421    1111   22234458888999965 4444  89999987  44432100000


Q ss_pred             hhhhh--H-Hhhhhhh------hh-ccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC
Q 047983           80 HSISL--N-MRMDDYL------LL-SESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE  148 (233)
Q Consensus        80 ~~~~~--~-~~~~~~~------~~-~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  148 (233)
                      .....  . .....+.      .. ..+.+... .++...+....+..+++.++.++++++++.+.|+++ ++.. ..+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~  314 (393)
T 3kgw_A          237 KPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLKF-FVKD  314 (393)
T ss_dssp             CCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB-SSSS
T ss_pred             CCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCee-ccCC
Confidence            00000  0 0000000      00 11122222 333333322233457889999999999999999887 5543 3232


Q ss_pred             ----ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEe-ec--CHHHHHHHHHH
Q 047983          149 ----GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITF-AV--EPSAFEIGLGR  221 (233)
Q Consensus       149 ----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~-~~--~~~~l~~~~~~  221 (233)
                          +++++|         +.++..    . +..++..++++++||.+.||..+...+++|+++ +.  +++++++++++
T Consensus       315 ~~~~~~~~~~---------~~~~~~----~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~  380 (393)
T 3kgw_A          315 PEIRLPTITT---------VTVPAG----Y-NWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEA  380 (393)
T ss_dssp             GGGBCSSEEE---------EECCTT----B-CHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHH
T ss_pred             hhhcCCeEEE---------EeCCCC----C-CHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHH
Confidence                356666         444321    1 355566666655599999998777789999998 63  89999999999


Q ss_pred             HHHHHHHHhhc
Q 047983          222 MKAFYYRHAKK  232 (233)
Q Consensus       222 l~~~l~~~~~~  232 (233)
                      |.+++++..++
T Consensus       381 l~~~l~~~~~~  391 (393)
T 3kgw_A          381 LREALQHCPKN  391 (393)
T ss_dssp             HHHHHHHSCBC
T ss_pred             HHHHHHhhhhc
Confidence            99999887543

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.71  E-value=2.5e-17  Score=144.55  Aligned_cols=202  Identities=12%  Similarity=0.031  Sum_probs=110.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++|++||++||+||+|.+| ..+... .....+....   +.|+||.++ +|+|+||+++++  ++++.+.-.    
T Consensus       227 ~l~~l~~~~~illI~DEv~~g~-~~g~~~-~~~~~~~~~d---i~t~sK~~~-~G~~iG~~~~~~--~i~~~~~~~----  294 (434)
T 3l44_A          227 KVNELVHEAGALVIYDEVITAF-RFMYGG-AQDLLGVTPD---LTALGKVIG-GGLPIGAYGGKK--EIMEQVAPL----  294 (434)
T ss_dssp             HHHHHHHTTTCEEEEECTTTTT-TSSSSC-HHHHHTCCCS---EEEEEGGGG-TTSSCEEEEECH--HHHTTBTTT----
T ss_pred             HHHHHHHHcCCEEEEeccccce-eccccH-HHHHcCCCCC---eeehhhhhc-CCcCeeeEEEcH--HHHHhhccC----
Confidence            6899999999999999999998 554321 1111222122   458999987 799999999887  454321000    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhh----cCCCcccccCCCccEEEEEec
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLK----EIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~g~~~~~~~  157 (233)
                          .......+++.++..++++.+.+ +...+   ++..+.++++++.+.+.|+    .++.... ..+.|.++.+.+.
T Consensus       295 ----~~~~~~~t~~~~~~a~aaa~aal-~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~g~~~~~~~~  365 (434)
T 3l44_A          295 ----GPAYQAGTMAGNPASMASGIACL-EVLQQ---EGLYEKLDELGATLEKGILEQAAKHNIDIT-LNRLKGALTVYFT  365 (434)
T ss_dssp             ----SSBCCCCTTTTCHHHHHHHHHHH-HHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTTCCEE-EEEETTEEEEEES
T ss_pred             ----CCcccCCCCCcCHHHHHHHHHHH-HHHHc---ccHHHHHHHHHHHHHHHHHHHHHhCCCCEE-EEeeccEEEEEEe
Confidence                00111122333333333444443 21111   2233333444444444443    3333222 3344444444111


Q ss_pred             CCCccccc-ccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHhhc
Q 047983          158 SEDKCLLK-LNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKK  232 (233)
Q Consensus       158 ~~~~~~~~-~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~~  232 (233)
                      +++..... ...+   .. .....+.+.|.++||.+.|+.    .+++|+++..+++++++++++|.+++++..++
T Consensus       366 ~~~~~~~~~~~~~---~~-~~~~~~~~~l~~~Gv~v~~~~----~~~~rl~~~~t~e~i~~~l~~l~~~l~~~~~~  433 (434)
T 3l44_A          366 TNTIEDYDAAQDT---DG-EMFGKFFKLMLQEGVNLAPSK----YEAWFLTTEHTKEDIEYTIEAVGRAFAALADN  433 (434)
T ss_dssp             SSCCCSHHHHHHS---CH-HHHHHHHHHHHHTTEECCSST----TCCEECCTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCcccchhhcccc---CH-HHHHHHHHHHHHCCeEEeecC----CCcEEEecccCHHHHHHHHHHHHHHHHHHHhc
Confidence            11000000 0000   00 022445555667899999975    25789987779999999999999999887654

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.71  E-value=4.7e-17  Score=141.04  Aligned_cols=192  Identities=15%  Similarity=0.140  Sum_probs=118.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|+++.+.+... .+...+...+++   |+||.++ +|+|+||+++++  ++++.+      
T Consensus       207 ~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~d~~---t~sK~~~-~G~r~G~~~~~~--~~~~~~------  273 (406)
T 4adb_A          207 QGLRELCNRHNALLIFDEVQTGVGRTGELY-AYMHYGVTPDLL---TTAKALG-GGFPVGALLATE--ECARVM------  273 (406)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTTTSSSS-HHHHHTCCCSEE---EECGGGG-TTSCCEEEEECH--HHHHTC------
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCccchhH-HHHhcCCCCCEE---Eechhhc-CCCCeEEEEEcH--HHHhhh------
Confidence            378999999999999999999887766432 222233334444   6799988 899999999987  344211      


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cccc-cCCCccEEEEEecC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC-ITCP-KKPEGSMFVMYCGS  158 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~-~~~~~g~~~~~~~~  158 (233)
                           .......+++.++..+.++.+.+ +....   .+.++.++++++++.+.|+++.. ...+ ..+..|.++|    
T Consensus       274 -----~~~~~~~~~~~~~~~~~a~~~~l-~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~----  340 (406)
T 4adb_A          274 -----TVGTHGTTYGGNPLASAVAGKVL-ELINT---PEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIG----  340 (406)
T ss_dssp             -----CTTSSCCSSTTCHHHHHHHHHHH-HHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEE----
T ss_pred             -----ccCCcCCCCCCCHHHHHHHHHHH-HHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEE----
Confidence                 11111122333333332333332 21111   46667777778888777766311 1101 1122466777    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHHhh
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                           +.++...  . .+..++. +.|.++||.+.|++    .+++|+++.  .+++++++++++|.+++++...
T Consensus       341 -----~~~~~~~--~-~~~~~~~-~~l~~~gi~v~~~~----~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~  402 (406)
T 4adb_A          341 -----CVLNADY--A-GQAKQIS-QEAAKAGVMVLIAG----GNVVRFAPALNVSEEEVTTGLDRFAAACEHFVS  402 (406)
T ss_dssp             -----EEECTTT--T-TCHHHHH-HHHHHTTEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             -----EEEeCCc--H-HHHHHHH-HHHHHCCcEEeecC----CCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence                 4443210  0 1244444 44556699999865    589999544  5899999999999999987754

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.71  E-value=1.7e-17  Score=143.81  Aligned_cols=184  Identities=14%  Similarity=0.179  Sum_probs=114.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|+++.+.+. +.++..++...+++   |+||.++ +|+|+||+++++  .++ .+      
T Consensus       207 ~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~d~~---s~sK~~~-~G~r~G~~~~~~--~~~-~l------  272 (397)
T 2ord_A          207 EEARKLCDEYDALLVFDEVQCGMGRTGK-LFAYQKYGVVPDVL---TTAKGLG-GGVPIGAVIVNE--RAN-VL------  272 (397)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTTTSS-SSHHHHHTCCCSEE---EECGGGG-TTSCCEEEEECS--TTC-CC------
T ss_pred             HHHHHHHHHcCCEEEEEecccCCccCcc-chhhhhhCCCCCee---eeccccC-CCcCeEEEEEch--Hhc-cc------
Confidence            3689999999999999999998776653 22233333222333   8899988 899999999987  333 22      


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC-Cccc--ccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP-CITC--PKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~--~~~~~~g~~~~~~~  157 (233)
                           .......+++.++..+..+.+. ++.. .+  ++.++.++++++.+.+.|++++ ++..  ...+ .|.|+|   
T Consensus       273 -----~~~~~~~~~~~~~~~~~a~~~~-l~~~-~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~~~---  339 (397)
T 2ord_A          273 -----EPGDHGTTFGGNPLACRAGVTV-IKEL-TK--EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRG-MGLMIG---  339 (397)
T ss_dssp             -----CTTSSCCSSTTCHHHHHHHHHH-HHHH-TS--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-ETTEEE---
T ss_pred             -----CCCCcCCCCCCCHHHHHHHHHH-HHHH-Hh--CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEE-EeEEEE---
Confidence                 1111112223333333233333 3221 11  4567788888888888886642 1111  1233 356677   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~  227 (233)
                            +.++..    . +..++... |.++||.+.||.    .+++|+++.  .+++++++++++|.++++
T Consensus       340 ------~~~~~~----~-~~~~l~~~-l~~~gi~v~~~~----~~~iRis~~~~~~~e~i~~~~~~l~~~l~  395 (397)
T 2ord_A          340 ------IQFREE----V-SNREVATK-CFENKLLVVPAG----NNTIRFLPPLTVEYGEIDLAVETLKKVLQ  395 (397)
T ss_dssp             ------EEECTT----S-CHHHHHHH-HHHTTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ------EEECCh----H-HHHHHHHH-HHHCCCEEccCC----CCEEEEECCcCCCHHHHHHHHHHHHHHHh
Confidence                  444321    1 24445544 456899999973    579999965  489999999999998875

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.70  E-value=3.2e-16  Score=132.73  Aligned_cols=200  Identities=14%  Similarity=-0.005  Sum_probs=120.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccc-cCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKR-WIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||++||+||+|+..    ..+.++..+   +..+++.|++|. ++.+|  +||+++++  ++++.+.....
T Consensus       144 ~~i~~l~~~~~~~li~D~a~~~~----~~~~~~~~~---~~d~~~~s~~K~~~~~~g--~G~~~~~~--~~~~~l~~~~~  212 (353)
T 2yrr_A          144 EAIGALAKEAGALFFLDAVTTLG----MLPFSMRAM---GVDYAFTGSQKCLSAPPG--LAPIAASL--EARKAFTGKRG  212 (353)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTT----TSCCCHHHH---TCSEEECCTTSTTCCCSS--CEEEEECH--HHHHHCCCCSC
T ss_pred             HHHHHHHHHcCCeEEEEcCcccc----ccccccccc---CceEEEecCcccccCCCc--eEEEEECH--HHHHHhccCCC
Confidence            37899999999999999999632    112223222   234778899995 45567  69999987  44432110000


Q ss_pred             hhhhh--HHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC--ccEEEE
Q 047983           80 HSISL--NMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE--GSMFVM  154 (233)
Q Consensus        80 ~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~~~~  154 (233)
                      ...+.  ............+++... .++...++...+..+++.++.++++++++.+.|+++ ++.. ..+.  +++++|
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~~~  290 (353)
T 2yrr_A          213 WYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRP-YPKASPLPTVLV  290 (353)
T ss_dssp             STTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEE-SCSSSBCTTEEE
T ss_pred             ccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCcc-ccCccCCCeEEE
Confidence            00000  000000011111222222 333333322112237788999999999999999887 6554 3343  677777


Q ss_pred             EecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHH-HHHHHHHHHHHH
Q 047983          155 YCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFE-IGLGRMKAFYYR  228 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~-~~~~~l~~~l~~  228 (233)
                               ++++.    +. +..++. +.|.++||.+.||..|...+++|+++.  .++++++ +++++|.+++++
T Consensus       291 ---------~~~~~----~~-~~~~~~-~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~  352 (353)
T 2yrr_A          291 ---------VRPPE----GV-DADRLV-RALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL  352 (353)
T ss_dssp             ---------EECCT----TC-CHHHHH-HHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred             ---------EECCC----CC-CHHHHH-HHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence                     54431    12 244444 455566999999998877889999994  3677778 999999988753

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.70  E-value=2.2e-16  Score=137.44  Aligned_cols=192  Identities=13%  Similarity=0.104  Sum_probs=122.7

Q ss_pred             ChHHHHHHHcCcEEEEccccC-ccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYG-HLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||++||+||+|. ++.+.+..+.++..  . +  +++.|+||.+  +|.|.||++++++ .+.        
T Consensus       190 ~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~--~-d--i~~~s~sK~l--~g~~~g~~~~~~~-~~~--------  253 (425)
T 3ecd_A          190 ARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEH--A-H--VVTSTTHKTL--RGPRGGFVLTNDE-EIA--------  253 (425)
T ss_dssp             HHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT--C-S--EEEEESSGGG--CCCSCEEEEESCH-HHH--------
T ss_pred             HHHHHHHHHcCCEEEEECcChHhhhhcccccCchhc--C-c--EEEecCCccc--CCCCcEEEEeCCH-HHH--------
Confidence            378999999999999999954 44444433222221  1 2  8899999986  6789999999862 122        


Q ss_pred             hhhhhHHhhhhhhh--hccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           80 HSISLNMRMDDYLL--LSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        80 ~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                            ..+.....  ...+++.+. .+++..+.....+++++.++.++++++++.+.|++. ++....++.+++++|  
T Consensus       254 ------~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~--  324 (425)
T 3ecd_A          254 ------KKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGTDNHLLL--  324 (425)
T ss_dssp             ------HHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEE--
T ss_pred             ------HHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCCCceEEE--
Confidence                  22222111  111223322 222222212223567788899999999999999885 454323335677888  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEE----CCcccCC--CCcEEEEeec------CHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVL----PGITVGL--KDWLRITFAV------EPSAFEIGLGRMKA  224 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~~--~~~~Rl~~~~------~~~~l~~~~~~l~~  224 (233)
                             +.++..   +  .+.+.+.+.|+++||.+.    ||..+..  .+++|+++..      ++++++++++.|.+
T Consensus       325 -------~~~~~~---~--~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~  392 (425)
T 3ecd_A          325 -------VDLRPK---G--LKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILE  392 (425)
T ss_dssp             -------EECGGG---T--CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             -------EEeCCC---C--CCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHH
Confidence                   444321   1  256777788888999999    5543332  4689998552      37899999999998


Q ss_pred             HHHHH
Q 047983          225 FYYRH  229 (233)
Q Consensus       225 ~l~~~  229 (233)
                      ++++.
T Consensus       393 ~l~~~  397 (425)
T 3ecd_A          393 VFEAL  397 (425)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            88765

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.70  E-value=6.9e-17  Score=138.58  Aligned_cols=177  Identities=15%  Similarity=0.179  Sum_probs=114.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||+++|+||+|.++...+.. .++..++...+++   |+||.++ +|+|+||+++++  ++++.+  .   
T Consensus       196 ~~i~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~d~~---s~SK~~~-~g~~~G~~~~~~--~~~~~~--~---  263 (375)
T 2eh6_A          196 SKLQEICKEKDVLLIIDEVQTGIGRTGEF-YAYQHFNLKPDVI---ALAKGLG-GGVPIGAILARE--EVAQSF--T---  263 (375)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTTTSSS-SGGGGGTCCCSEE---EECGGGG-TTSCCEEEEEEH--HHHTTC--C---
T ss_pred             HHHHHHHHHhCCEEEEeccccCCCCCCcc-hhhhhcCCCCCEE---EEccccc-CCCCeEEEEEcH--HHHhhh--c---
Confidence            37899999999999999999987554422 2333333223333   8889988 699999999987  444321  1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                            ......+++.++..+..+.+. ++. .    .+.++.++++++++.+.|++++..   ..+..|+++|      
T Consensus       264 ------~~~~~~~~~~~~~~~~~~~~~-l~~-~----~~~~~~~~~~~~~l~~~L~~~~~~---~~~~~g~~~~------  322 (375)
T 2eh6_A          264 ------PGSHGSTFGGNPLACRAGTVV-VDE-V----EKLLPHVREVGNYFKEKLKELGKG---KVKGRGLMLG------  322 (375)
T ss_dssp             ------TTSCCCSSTTCHHHHHHHHHH-HHH-H----HHHHHHHHHHHHHHHHHHHHTTSS---EEEEETTEEE------
T ss_pred             ------CCCCCCCCCCCHHHHHHHHHH-HHH-H----HHHHHHHHHHHHHHHHHHHHHhcC---CceEEEEEEE------
Confidence                  100111222222222133332 221 1    167788889999999999887542   2244577888      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAF  225 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~  225 (233)
                         +.++  .     +..++...+ .++||.+.|+.    .+++|+++.  .+++++++++++|.++
T Consensus       323 ---~~~~--~-----~~~~~~~~l-~~~gi~~~~~~----~~~iRi~~~~~~~~~~i~~~~~~l~~~  374 (375)
T 2eh6_A          323 ---LELE--R-----ECKDYVLKA-LEKGLLINCTA----GKVLRFLPPLIIQKEHIDRAISVLREI  374 (375)
T ss_dssp             ---EECS--S-----CCHHHHHHH-HHTTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             ---EEEc--C-----cHHHHHHHH-HHCCCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence               4443  1     244555554 46899999863    589999976  3899999999999875

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.69  E-value=6.5e-17  Score=141.67  Aligned_cols=187  Identities=13%  Similarity=0.124  Sum_probs=114.4

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++||++||+||+|.++.+++... .+...+...+++   |+||.++ +|+|+||+++++  ++++.  +     
T Consensus       226 ~l~~l~~~~gi~lI~Dev~~g~~~~g~~~-~~~~~~~~~dii---t~sK~l~-~G~~iG~~~~~~--~l~~~--l-----  291 (420)
T 2pb2_A          226 GLRDLCDEHQALLVFDEVQCGMGRTGDLF-AYMHYGVTPDIL---TSAKALG-GGFPVSAMLTTQ--EIASA--F-----  291 (420)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTTTSSSS-HHHHHTCCCSEE---EECGGGG-TTSCCEEEEECH--HHHTT--C-----
T ss_pred             HHHHHHHHcCCEEEEEcCCcCcccCCcHH-HHHhcCCCCCeE---Eeccccc-CCCceEEEEEhH--HHHHh--h-----
Confidence            68999999999999999999887665322 122222223344   7899988 899999999987  44432  1     


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcC----CCcccccCCCccEEEEEec
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEI----PCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~g~~~~~~~  157 (233)
                          .......+++.++..+.++.+.+ +...+   ++..+.++++++++.+.|+++    +.+.. ..+. |.++|   
T Consensus       292 ----~~~~~~~t~~~~~~~~aa~~a~L-~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~-g~~~~---  358 (420)
T 2pb2_A          292 ----HVGSHGSTYGGNPLACAVAGAAF-DIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSD-IRGM-GLLIG---  358 (420)
T ss_dssp             ----C----CCEECCCHHHHHHHHHHH-HHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEE-EEEE-TTEEE---
T ss_pred             ----cCCCcCcccCcCHHHHHHHHHHH-HHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEE-EEec-ceEEE---
Confidence                11111122333333332333333 21111   345667777777777777653    32221 2343 56667   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                            +.++...  +. +..++.. .|.++||.+.|+.    .+++|+++.  .+++++++++++|.+++++.
T Consensus       359 ------v~~~~~~--~~-~~~~l~~-~l~~~Gi~v~~~~----~~~iRl~~~~~~t~eei~~~~~~l~~~l~~~  418 (420)
T 2pb2_A          359 ------AELKPKY--KG-RARDFLY-AGAEAGVMVLNAG----ADVMRFAPSLVVEEADIHEGMQRFAQAVGKV  418 (420)
T ss_dssp             ------EEECGGG--TT-CHHHHHH-HHHHTTEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ------EEECCCc--hH-HHHHHHH-HHHHCCCEEEeCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence                  4443210  00 2344444 4556899999974    579999965  48999999999999998765

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.69  E-value=1.4e-15  Score=130.96  Aligned_cols=202  Identities=9%  Similarity=0.001  Sum_probs=123.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccc-cCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKR-WIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|+||+|+.    +..+..+..   .+..+++.|+||. ++.+|+  ||+++++  ++++.+.-.+.
T Consensus       154 ~~i~~l~~~~~~~li~D~a~~~----g~~~~~~~~---~~~d~~~~s~sK~~~~~~g~--G~l~~~~--~~~~~l~~~~~  222 (392)
T 2z9v_A          154 DAIGALVSAHGAYLIVDAVSSF----GGMKTHPED---CKADIYVTGPNKCLGAPPGL--TMMGVSE--RAWAKMKANPL  222 (392)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTB----TTBSCCGGG---GTCSEEEECSSSTTCCCSCC--EEEEECH--HHHHHHHTCTT
T ss_pred             HHHHHHHHHcCCeEEEEccccc----CCccccccc---ccceEEEecCcccccCCCce--eEEEECH--HHHHHhhhccC
Confidence            3789999999999999999984    211122222   2345889999994 455665  9999987  44432100000


Q ss_pred             ----hhhhhHHhhh---hhhhhccCcchHH-HHHHHHhhhcHHHH-HHHHHHHHHHHHHHHHHHhhcCCCcccccC-CC-
Q 047983           80 ----HSISLNMRMD---DYLLLSESVYTTV-GAVPQILEKTEEEF-FSKITDILREAADICCDRLKEIPCITCPKK-PE-  148 (233)
Q Consensus        80 ----~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~-  148 (233)
                          ...+......   .......+++... .++...++ ...++ +++.++.++++++++.+.|+++ ++.. .. +. 
T Consensus       223 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~-~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~  299 (392)
T 2z9v_A          223 APRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALD-LYLNEGPEAVWARHALTAKAMRAGVTAM-GLSV-WAASDS  299 (392)
T ss_dssp             SCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB-SSSSGG
T ss_pred             CCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHH-HHHhccHHHHHHHHHHHHHHHHHHHHHc-CCee-ccCCcc
Confidence                0000000000   0001111122222 23322222 22334 6788999999999999999887 5554 33 32 


Q ss_pred             --ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEe-e--cCHHHHHHHHHHHH
Q 047983          149 --GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITF-A--VEPSAFEIGLGRMK  223 (233)
Q Consensus       149 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~-~--~~~~~l~~~~~~l~  223 (233)
                        .+.++|         ++++.    +. +..++..++++++||.+.||+.+...+++|+++ +  .+++++++++++|.
T Consensus       300 ~~~~~~~~---------~~~~~----~~-~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~  365 (392)
T 2z9v_A          300 IASPTTTA---------VRTPD----GV-DEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALG  365 (392)
T ss_dssp             GBCTTEEE---------EECCT----TC-CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred             ccCCceEE---------EECCC----CC-CHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHH
Confidence              466777         44431    11 345555555544599999998876788999995 5  48999999999999


Q ss_pred             HHHHHHh
Q 047983          224 AFYYRHA  230 (233)
Q Consensus       224 ~~l~~~~  230 (233)
                      +++++..
T Consensus       366 ~~~~~~~  372 (392)
T 2z9v_A          366 GAMNAAG  372 (392)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            9998764

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.69  E-value=8.5e-17  Score=138.96  Aligned_cols=198  Identities=16%  Similarity=0.056  Sum_probs=110.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++|+||+|+.+..++....+....   ...+++.|+||.  ++|+|+||+++++  +++         
T Consensus       162 ~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~---~~di~~~S~sK~--l~g~~~G~~~~~~--~~~---------  225 (374)
T 2aeu_A          162 KKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKL---GADLVVTSTDKL--MEGPRGGLLAGKK--ELV---------  225 (374)
T ss_dssp             HHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHH---TCSEEEEETTSS--SSSCSCEEEEEEH--HHH---------
T ss_pred             HHHHHHHHHcCCEEEEECCcccccccccccCCcccc---CCcEEEecCccc--ccCcceEEEEECH--HHH---------
Confidence            378999999999999999999874211100001112   234889999997  4578999999987  444         


Q ss_pred             hhhhHHhhhhhhh-hccCcchHH-HHHHHHhhhcHHHHHHHHHHHH----HHHHHHHHHHhhcC---CCcccccCCCccE
Q 047983           81 SISLNMRMDDYLL-LSESVYTTV-GAVPQILEKTEEEFFSKITDIL----REAADICCDRLKEI---PCITCPKKPEGSM  151 (233)
Q Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~----~~~~~~l~~~L~~~---~~~~~~~~~~~g~  151 (233)
                           ..+..... ++.++++.. .+....++....+.++...+..    +++++.+.+.|..+   .++.....|.|.+
T Consensus       226 -----~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~  300 (374)
T 2aeu_A          226 -----DKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFV  300 (374)
T ss_dssp             -----HHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEE
T ss_pred             -----HHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEE
Confidence                 33222211 222223322 3333333222111111111111    22245555555543   2333224566666


Q ss_pred             EEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-CCcEEEEeec-C--HHHHHHHHHHHHHHHH
Q 047983          152 FVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-KDWLRITFAV-E--PSAFEIGLGRMKAFYY  227 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~Rl~~~~-~--~~~l~~~~~~l~~~l~  227 (233)
                      |.|           .+........++.+++.++++++||.+.||..|.. ++++|++++. +  +.+++...+.|.+.++
T Consensus       301 ~~~-----------~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~  369 (374)
T 2aeu_A          301 IKR-----------VYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIK  369 (374)
T ss_dssp             EEE-----------EESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHH
T ss_pred             EEe-----------ecccccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHH
Confidence            666           22211000001233667888889999999988854 6799999985 2  2236777777777776


Q ss_pred             HHh
Q 047983          228 RHA  230 (233)
Q Consensus       228 ~~~  230 (233)
                      +..
T Consensus       370 ~~~  372 (374)
T 2aeu_A          370 MAF  372 (374)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            654

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.69  E-value=3.2e-17  Score=143.78  Aligned_cols=198  Identities=14%  Similarity=0.086  Sum_probs=113.8

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++|++||++||+||+|.+| ..+... .....+....   +.|+||.++. |+|+||+++++  ++++.+.-.    
T Consensus       225 ~l~~l~~~~~~~li~DEv~~g~-~~g~~~-~~~~~~~~~d---i~t~sK~~~~-G~~iG~~~~~~--~~~~~~~~~----  292 (429)
T 3k28_A          225 GLREVTEQNGALLIFDEVMTGF-RVAYNC-GQGYYGVTPD---LTCLGKVIGG-GLPVGAYGGKA--EIMRQVAPS----  292 (429)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTT-TSSTTH-HHHHHTCCCS---EEEECGGGGT-TSCCEEEEECH--HHHTTBTTT----
T ss_pred             HHHHHHHHcCCEEEEecccccc-ccCcch-HHHHhCCCCc---eehhhhhhcC-CCCeEEEEEcH--HHHhhhccC----
Confidence            6899999999999999999998 554321 1111222222   4579999874 99999999987  454321000    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEEEec
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~~~  157 (233)
                          .......+++.++..++++.+.+ +...    ++.++.++++++++.+.|++    .+.... .++.|.++.|.+.
T Consensus       293 ----~~~~~~~t~~~~~~a~aaa~aal-~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~g~~~~~~~~  362 (429)
T 3k28_A          293 ----GPIYQAGTLSGNPLAMAAGYETL-VQLT----PESYVEFERKAEMLEAGLRKAAEKHGIPHH-INRAGSMIGIFFT  362 (429)
T ss_dssp             ----SSBCCCCTTTTCHHHHHHHHHHH-HTCC----HHHHHHHHHHHHHHHHHHHHHHHHTTCCCE-EEEETTEEEEESS
T ss_pred             ----CCccccCCCCCChHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCCEE-EEeeccEEEEEEe
Confidence                00011122333333332444444 2222    45566667777777766655    333332 3455555554221


Q ss_pred             CCCccccc-ccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLK-LNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       158 ~~~~~~~~-~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                      +++..... ...+   .. .....+.+.|.++||.+.|++    .+++|+++..+++++++++++|.+++++.
T Consensus       363 ~~~~~~~~~~~~~---~~-~~~~~~~~~l~~~Gv~v~~~~----~~~~r~~~~~t~e~i~~~l~~l~~~l~~~  427 (429)
T 3k28_A          363 DEPVINYDAAKSS---NL-QFFAAYYREMVEQGVFLPPSQ----FEGLFLSTVHSDADIEATIAAAEIAMSKL  427 (429)
T ss_dssp             SSCCCSHHHHTTS---CH-HHHHHHHHHHHHTTEECCSST----TSCBCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             cCCcccccccccc---cH-HHHHHHHHHHHHCCeEEecCC----CCCEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence            11110000 0000   00 122444555667899999974    36789988889999999999999998764

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.69  E-value=7.1e-16  Score=130.79  Aligned_cols=200  Identities=13%  Similarity=-0.004  Sum_probs=122.9

Q ss_pred             ChHHHHHHHc--CcEEEEccccCccccCCCccccccccCCccCEEEEccCcc-ccCCCCceEEEEEecCCCccccccchh
Q 047983            1 FCIEETTKKL--GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISK-RWIVPGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~~--~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~~~~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++|.++|++|  |++||+||+|+.    +..+..+.   ..+..+++.|+|| .++.+|  +||+++++  .+++.+.- 
T Consensus       141 ~~i~~l~~~~~~~~~li~D~a~~~----~~~~~~~~---~~~~d~~~~s~~K~~~~~~g--~G~~~~~~--~~~~~~~~-  208 (352)
T 1iug_A          141 PALARAFKEKNPEGLVGADMVTSL----LVGEVALE---AMGVDAAASGSQKGLMCPPG--LGFVALSP--RALERLKP-  208 (352)
T ss_dssp             HHHHHHHHHHCTTCEEEEECTTTB----TTBCCCSG---GGTCSEEEEESSSTTCCCSC--EEEEEECH--HHHHTCCC-
T ss_pred             HHHHHHHHhhCCCCEEEEECCccc----cCcceecc---ccCeeEEEecCcccccCCCc--eeEEEECH--HHHHHhhC-
Confidence            3789999999  999999999973    11111222   2234588999999 444445  89999977  33321000 


Q ss_pred             hhhhhhhHHhhhhh--hhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC-ccEEE
Q 047983           78 FFHSISLNMRMDDY--LLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE-GSMFV  153 (233)
Q Consensus        78 ~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~g~~~  153 (233)
                      .....+........  .....+++... .++...++. ..+++++.++.++++++++.+.|+++ ++.. ..|. .+.++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~  285 (352)
T 1iug_A          209 RGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEE-VLPRLEEHLALKAWQNALLYGVGEEG-GLRP-VPKRFSPAVA  285 (352)
T ss_dssp             CSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHHHHHHHHT-TCEE-SCSSBCTTCE
T ss_pred             CCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHC-CCcc-cccccCCeEE
Confidence            00000000011111  11111222222 333333322 22237888999999999999999887 6654 4453 67778


Q ss_pred             EEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHHh
Q 047983          154 MYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~~  230 (233)
                      |         ++++.    +. +..++. +.|.++||.+.||+.....+++|++++.  +++++++++++|.+++++..
T Consensus       286 ~---------~~~~~----~~-~~~~~~-~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  349 (352)
T 1iug_A          286 A---------FYLPE----GV-PYARVK-EAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEIL  349 (352)
T ss_dssp             E---------EECCT----TC-CHHHHH-HHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred             E---------EEcCC----CC-CHHHHH-HHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHhc
Confidence            8         54431    12 244444 4455679999999865457899999995  68999999999999987763

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.69  E-value=1.2e-16  Score=140.92  Aligned_cols=201  Identities=12%  Similarity=0.022  Sum_probs=111.8

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||++||+||+|.+|.+++... .....+....   +.++||.++. | +|+||+++++  ++++.  +.+  
T Consensus       236 ~l~~l~~~~~~~lI~DEv~~g~g~~g~~~-a~~~~~~~~d---i~t~sK~l~~-G~~~ig~v~~~~--~~~~~--~~~--  304 (448)
T 3dod_A          236 GVRELCTTYDVLMIVDEVATGFGRTGKMF-ACEHENVQPD---LMAAGKGITG-GYLPIAVTFATE--DIYKA--FYD--  304 (448)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTTTSSSS-GGGGGTCCCS---EEEECGGGGT-TSSCCEEEEEEH--HHHHT--TCS--
T ss_pred             HHHHHHHHhCCEEEEeccccCCCcccchh-hhhhcCCCCC---EEEecccccC-CcCceEEEEECH--HHHHH--hhh--
Confidence            68999999999999999999987666432 2222222222   3478999765 9 5999999987  44432  110  


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                      ............+++.++..++++++.+ +.. .++..+..++..+..++.+.+ +..++.+.. ..+. |.++|     
T Consensus       305 ~~~~~~~~~~~~t~~~~~~~~aaa~aal-~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~-~~~~-g~~~~-----  375 (448)
T 3dod_A          305 DYENLKTFFHGHSYTGNQLGCAVALENL-ALFESENIVEQVAEKSKKLHFLLQD-LHALPHVGD-IRQL-GFMCG-----  375 (448)
T ss_dssp             CGGGCCCCCCCCTTTTCHHHHHHHHHHH-HHHHHTTHHHHHHHHHHHHHHHHHH-HTTSTTEEE-EEEE-TTEEE-----
T ss_pred             ccccCCcccccCCCCcCHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHH-HhcCCCeEE-EEee-eEEEE-----
Confidence            0000000111223333333333444443 211 123344444444444555555 545543322 2333 55666     


Q ss_pred             Cccccccccccc--CCCCCh---HHHHHHHHhccCEEEECCcccCCCCcEEEEe--ecCHHHHHHHHHHHHHHHHHHhh
Q 047983          160 DKCLLKLNYSLL--EGINSD---TEFALKLAKEESIIVLPGITVGLKDWLRITF--AVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       160 ~~~~~~~~~~~~--~~~~~~---~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~--~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                          +.++....  ......   ...+.+.|.++||.+.|+.     +++|++.  ..+++++++++++|.+++++..+
T Consensus       376 ----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~  445 (448)
T 3dod_A          376 ----AELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLG-----DVIAFLPPLASTAEELSEMVAIMKQAIHEVTS  445 (448)
T ss_dssp             ----EEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEET-----TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             ----EEEccCcccccccchhhHHHHHHHHHHHHCCcEEeccC-----CEEEEECCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence                33321100  000000   2334444557799999862     7999954  45899999999999999987654

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.69  E-value=4.8e-16  Score=132.27  Aligned_cols=200  Identities=12%  Similarity=0.025  Sum_probs=121.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|+....    +..+   ...+..+++.|+||.++. +.++||+++++  ++++.+.-. ..
T Consensus       151 ~~i~~l~~~~~~~li~Dea~~~~~~----~~~~---~~~~~di~~~s~~K~~~~-~~g~G~~~~~~--~~~~~~~~~-~~  219 (366)
T 1m32_A          151 DEVGALAHRYGKTYIVDAMSSFGGI----PMDI---AALHIDYLISSANKCIQG-VPGFAFVIARE--QKLAACKGH-SR  219 (366)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTS----CCCT---TTTTCSEEEEESSSTTCC-CSSEEEEEEEH--HHHTTCTTC-CS
T ss_pred             HHHHHHHHHcCCEEEEECCccccCc----Cccc---cccCccEEEecCcccccC-CCceEEEEECH--HHHHhhcCC-CC
Confidence            3789999999999999999985322    1122   222455899999997533 23479999987  454321100 00


Q ss_pred             h-h-hhHHhhhhh-h--hh-ccCcchHH-HHHHHHhhhcHHHH--HHHHHHHHHHHHHHHHHHhhcCCCcccccCC---C
Q 047983           81 S-I-SLNMRMDDY-L--LL-SESVYTTV-GAVPQILEKTEEEF--FSKITDILREAADICCDRLKEIPCITCPKKP---E  148 (233)
Q Consensus        81 ~-~-~~~~~~~~~-~--~~-~~~~~~~~-~~~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---~  148 (233)
                      . . ++....... .  .. ..+++... .++...++ ...++  +++.++.++++++++.+.|+++ ++.. ..|   .
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~-~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~-~~~~~~~  296 (366)
T 1m32_A          220 SLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALK-ELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNT-LLDDELH  296 (366)
T ss_dssp             CSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH-HHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCB-SSCGGGB
T ss_pred             CccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHH-HHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCee-ccCchhc
Confidence            0 0 000000000 0  00 11222222 23333332 22333  6788999999999999999887 5543 333   4


Q ss_pred             ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 047983          149 GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFY  226 (233)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l  226 (233)
                      +++++|         ++++..  .+. +..++. +.|.++||.+.||..| ..+++|++++.  +++++++++++|.+++
T Consensus       297 ~~~~~~---------~~~~~~--~~~-~~~~~~-~~l~~~gi~v~~~~~~-~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  362 (366)
T 1m32_A          297 SPIITA---------FYSPED--PQY-RFSEFY-RRLKEQGFVIYPGKVS-QSDCFRIGNIGEVYAADITALLTAIRTAM  362 (366)
T ss_dssp             CSSEEE---------EECCCC--TTC-CHHHHH-HHHHHTTEECEECCCS-SSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred             CceEEE---------EEcCcc--CCC-CHHHHH-HHHHHCCEEEECCcCC-CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence            677888         554320  011 244444 4455669999999877 46899999995  7899999999998876


Q ss_pred             HH
Q 047983          227 YR  228 (233)
Q Consensus       227 ~~  228 (233)
                      ++
T Consensus       363 ~~  364 (366)
T 1m32_A          363 YW  364 (366)
T ss_dssp             TT
T ss_pred             Hh
Confidence            53

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.69  E-value=1.1e-16  Score=138.58  Aligned_cols=184  Identities=17%  Similarity=0.221  Sum_probs=114.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|.++.+.+.. .++...+...+++   |+||.++. |+|+||+++++  ++++.  +.   
T Consensus       209 ~~i~~l~~~~~~~li~Dea~~~~~~~g~~-~~~~~~~~~~d~~---s~sK~~~~-g~~~G~~~~~~--~~~~~--l~---  276 (395)
T 1vef_A          209 RAAREITQEKGALLILDEIQTGMGRTGKR-FAFEHFGIVPDIL---TLAKALGG-GVPLGVAVMRE--EVARS--MP---  276 (395)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTTTSSS-STHHHHTCCCSEE---EECGGGGT-TSSCEEEEEEH--HHHHT--SC---
T ss_pred             HHHHHHHHHcCCEEEEEecccCCccCCch-hHhhhcCCCCCEE---EEcccccC-CCceEEEEehH--HHHhh--hc---
Confidence            36899999999999999999986554432 1222222222333   88999886 99999999987  34431  11   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                            ......+++.++..+..+.+. ++. ..+  ....+.++++++++.+.|++++.......+..|.++|      
T Consensus       277 ------~~~~~~~~~~~~~~~~a~~~a-l~~-~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~------  340 (395)
T 1vef_A          277 ------KGGHGTTFGGNPLAMAAGVAA-IRY-LER--TRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVG------  340 (395)
T ss_dssp             ------TTSSCCSSTTCHHHHHHHHHH-HHH-HHH--HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTEEE------
T ss_pred             ------cCCcCCCcCCCHHHHHHHHHH-HHH-HHh--CCHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEEEEE------
Confidence                  100111122222222122333 221 111  3567888889999999998864311001233567888      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l  226 (233)
                         +.++  .     +..++..++++++||.+.|+.    .+++|+++.  .+++++++++++|.+++
T Consensus       341 ---~~~~--~-----~~~~l~~~l~~~~gi~v~~~~----~~~iRi~~~~~~~~~~i~~~~~~l~~~l  394 (395)
T 1vef_A          341 ---LELK--E-----KAAPYIARLEKEHRVLALQAG----PTVIRFLPPLVIEKEDLERVVEAVRAVL  394 (395)
T ss_dssp             ---EEES--S-----CSHHHHHHHHHHHCEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             ---EEEc--C-----hHHHHHHHHHHHCCeEEecCC----CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence               5443  1     145555555537899999963    589999876  48999999999998875

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.69  E-value=1.1e-16  Score=138.22  Aligned_cols=180  Identities=18%  Similarity=0.170  Sum_probs=115.4

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||+++|+||+|.++.+++... .....+...+++   |+||.++ +| +|+||+++++  ++++.+      
T Consensus       207 ~i~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~d~~---~~SK~l~-gG~~~~G~~~~~~--~~~~~~------  273 (392)
T 3ruy_A          207 EALEVCKKENVLFVADEIQTGLGRTGKVF-ACDWDNVTPDMY---ILGKALG-GGVFPISCAAANR--DILGVF------  273 (392)
T ss_dssp             HHHHHHHTTTCEEEEECTTTTTTTTSSSS-GGGGGTCCCSEE---EECGGGG-TTTSCCEEEEECH--HHHTTC------
T ss_pred             HHHHHHHHcCCEEEEeechhCCCccccch-hhhccCCCCCEE---EEchhhh-CChhhhEEEEECH--HHHhhh------
Confidence            68999999999999999999887765422 222222223333   7789744 36 9999999987  444321      


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC--CcccccCCCccEEEEEecC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP--CITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~~~g~~~~~~~~  158 (233)
                           .......+++.++..+ .+....++. ...  ++.++.++++++++.+.|++++  .+.. ..+.|+++.|    
T Consensus       274 -----~~~~~~~~~~~~~~~~-~a~~~~l~~-~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~g~~~~~----  339 (392)
T 3ruy_A          274 -----EPGSHGSTFGGNPLAC-AVSIAALEV-LEE--EKLTERSLQLGEKLVGQLKEIDNPMITE-VRGKGLFIGI----  339 (392)
T ss_dssp             -----CTTSSCCSSTTCHHHH-HHHHHHHHH-HHH--TTHHHHHHHHHHHHHHHHTTCCCTTEEE-EEEETTEEEE----
T ss_pred             -----ccCCcCCCCCCCHHHH-HHHHHHHHH-HHh--hhHHHHHHHHHHHHHHHHHHhcCCCceE-EEeeeeEEEE----
Confidence                 1111112223223332 333333322 122  6788899999999999998863  2332 4455666655    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l  226 (233)
                            .++  .     +..++... |.++||.+.||+    .+++|+++.  .+++++++++++|.+++
T Consensus       340 ------~~~--~-----~~~~l~~~-l~~~gi~v~~~~----~~~iRi~~~~~~~~~~i~~~~~~l~~~l  391 (392)
T 3ruy_A          340 ------ELN--E-----PARPYCEQ-LKAAGLLCKETH----ENVIRIAPPLVISEEDLEWAFQKIKAVL  391 (392)
T ss_dssp             ------EES--S-----CSHHHHHH-HHTTTEECCCBT----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             ------EEc--c-----hHHHHHHH-HHHCCcEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence                  232  1     24555555 558899999875    589999955  48999999999998876

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.69  E-value=1e-15  Score=131.48  Aligned_cols=189  Identities=16%  Similarity=-0.002  Sum_probs=118.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcc-cc------ccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHF-VP------MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD   73 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~------~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~   73 (233)
                      ++|+++|++||++||+||+|+.+.++.... ..      ...+.. +..+++.|++|. +.+|.|+||+++++. .+.+.
T Consensus       191 ~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~-~~~~~~~g~~~~~~~-~~~~~  267 (397)
T 3f9t_A          191 EELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKM-GHCPIPSGGILFKDI-GYKRY  267 (397)
T ss_dssp             HHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTT-TCCCSSCEEEEESSG-GGGGG
T ss_pred             HHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccc-cCCCCCceEEEEeCH-HHHHh
Confidence            378999999999999999999865532110 00      111222 445889999996 667889999999873 22221


Q ss_pred             cchhhhhhhhhHHhhhhhhhh-------cc-CcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc
Q 047983           74 LGVAFFHSISLNMRMDDYLLL-------SE-SVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPK  145 (233)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  145 (233)
                        +         .....+...       +. +.... .++...+.........+..+.++++++++.+.|+++ ++..+.
T Consensus       268 --~---------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~  334 (397)
T 3f9t_A          268 --L---------DVDAPYLTETRQATILGTRVGFGG-ACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN-NFKPVI  334 (397)
T ss_dssp             --T---------CEECTTSSSSEECSSCSSCCSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSS
T ss_pred             --h---------ccCCccccCCCccccccccccchH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEc
Confidence              1         000111100       00 11112 222222211234567788888889999999999988 555333


Q ss_pred             CCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHH
Q 047983          146 KPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMK  223 (233)
Q Consensus       146 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~  223 (233)
                      +| .+.++|         +..+         +...+.+.|.++||.+.||+.   .+++|++++.  +++++++++++|.
T Consensus       335 ~~-~~~~~~---------~~~~---------~~~~~~~~l~~~gi~v~~~~~---~~~~Ri~~~~~~~~e~i~~~~~~l~  392 (397)
T 3f9t_A          335 EP-ILNIVA---------IEDE---------DYKEVCKKLRDRGIYVSVCNC---VKALRIVVMPHIKREHIDNFIEILN  392 (397)
T ss_dssp             CC-SSSEEE---------EECT---------THHHHHHHHHHTTCBCEECSS---SSEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             CC-CccEEE---------EEeC---------CHHHHHHHHHhCCeEEeccCC---CCEEEEEEcCCCCHHHHHHHHHHHH
Confidence            44 455556         3332         234445555677999999764   5899999994  8899999999999


Q ss_pred             HHHH
Q 047983          224 AFYY  227 (233)
Q Consensus       224 ~~l~  227 (233)
                      ++++
T Consensus       393 ~~l~  396 (397)
T 3f9t_A          393 SIKR  396 (397)
T ss_dssp             HHC-
T ss_pred             HhhC
Confidence            8764

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.68  E-value=7.5e-16  Score=134.37  Aligned_cols=178  Identities=17%  Similarity=0.114  Sum_probs=111.3

Q ss_pred             ChHHHHHHH-cCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceE-EEEEecCCCccccccchhh
Q 047983            1 FCIEETTKK-LGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~-~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~-G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++|++ +|+++|+||+|..+.+..    ++    ..++.+++.|+||.|+++|+|+ ||+++++  ++++      
T Consensus       167 ~~i~~la~~~~~~~li~De~~~~~~~~~----~~----~~~~di~~~S~sK~~~~~g~ri~G~~~~~~--~~~~------  230 (404)
T 1e5e_A          167 ERVCKDAHSQEGVLVIADNTFCSPMITN----PV----DFGVDVVVHSATKYINGHTDVVAGLICGKA--DLLQ------  230 (404)
T ss_dssp             HHHHHHHHTSTTCEEEEECTTTCTTTCC----GG----GGTCSEEEEETTTTTTCSSCCCCEEEEECH--HHHH------
T ss_pred             HHHHHHHHhhcCCEEEEECCCchhhhCC----cc----ccCCEEEEEcCccccCCCCCCeEEEEEECH--HHHH------
Confidence            378999999 999999999999987541    22    1256799999999999999998 9999987  3332      


Q ss_pred             hhhhhhHHhhhhhhh-h-ccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC--------------C
Q 047983           79 FHSISLNMRMDDYLL-L-SESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP--------------C  140 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~-~-~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--------------~  140 (233)
                             ..+..... + +.+.++..  .+.+.+ + .    +....+...++.+.+.+.+++.+              +
T Consensus       231 -------~~l~~~~~~~~g~~~~~~~~~~~~~~l-~-~----~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~  297 (404)
T 1e5e_A          231 -------QIRMVGIKDITGSVISPHDAWLITRGL-S-T----LNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEG  297 (404)
T ss_dssp             -------HHHHTCCCCCCCCCCCHHHHHHHHHHH-T-T----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTT
T ss_pred             -------HHHHHHHHhCCCCCCCHHHHHHHHHhH-h-H----HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCcc
Confidence                   13332222 1 22233322  223332 2 1    22333444555565556555432              1


Q ss_pred             cccccCC----CccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----------------
Q 047983          141 ITCPKKP----EGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----------------  200 (233)
Q Consensus       141 ~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----------------  200 (233)
                      +.. ..|    .|+++.|            .++      +..+.+.+++++.|| +.+|..||.                
T Consensus       298 ~~~-~~~~~~~~g~~~~~------------~~~------~~~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~  357 (404)
T 1e5e_A          298 HDI-AKKQMRMYGSMITF------------ILK------SGFEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVV  357 (404)
T ss_dssp             HHH-HHHHCSSCCSEEEE------------EET------THHHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTS
T ss_pred             HHH-HHhhCCCCceEEEE------------EeC------CCHHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccC
Confidence            111 112    2777776            222      134567778889999 556655542                


Q ss_pred             -----------CCcEEEEeecCHHHHHHHHHHHHHHHHHH
Q 047983          201 -----------KDWLRITFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       201 -----------~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                                 ++++|+|++.  ++++++++.|+++++..
T Consensus       358 ~~~~~~~~g~~~~~iRis~g~--e~~~~li~~l~~al~~~  395 (404)
T 1e5e_A          358 PKEEREAAGITDGMIRLSVGI--EDADELIADFKQGLDAL  395 (404)
T ss_dssp             CHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHhcCCCCCeEEEEeCC--CCHHHHHHHHHHHHHHH
Confidence                       5799999998  56677777777777654

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.68  E-value=2.9e-16  Score=139.71  Aligned_cols=195  Identities=17%  Similarity=0.142  Sum_probs=112.9

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++|++||++||+||+|.+|...|... .....+....++   ++||.++..|+|+||+++++  +++          
T Consensus       248 ~l~~l~~~~gillI~DEv~~gfgr~G~~~-a~~~~~v~pdi~---t~sK~l~gg~~plG~v~~~~--~i~----------  311 (472)
T 3hmu_A          248 EIQRICDKYDILLIADEVICGFGRTGNWF-GTQTMGIRPHIM---TIAKGLSSGYAPIGGSIVCD--EVA----------  311 (472)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTTTSSSC-HHHHHTCCCSEE---EECGGGTTTSSCCEEEEEEH--HHH----------
T ss_pred             HHHHHHHHcCCEEEEEccccCCcccCccc-hhHHhCCCCcee---eechhhhcCCcceEEEEECH--HHH----------
Confidence            68999999999999999999987666321 122222223333   68999877779999999987  333          


Q ss_pred             hhhHHhhh-----hhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHH-HHHHHHHHHhhc---CCCcccccCCCccEE
Q 047983           82 ISLNMRMD-----DYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILR-EAADICCDRLKE---IPCITCPKKPEGSMF  152 (233)
Q Consensus        82 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~l~~~L~~---~~~~~~~~~~~~g~~  152 (233)
                          ..+.     ...+++.++..++++++.+ +...+   +...+.++ ++.+++.+.|++   ++.+.. ..+.|.++
T Consensus       312 ----~~~~~~~~~~~~t~~~np~a~aAa~aaL-~~~~~---~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~-vr~~G~~~  382 (472)
T 3hmu_A          312 ----HVIGKDEFNHGYTYSGHPVAAAVALENL-RILEE---ENILDHVRNVAAPYLKEKWEALTDHPLVGE-AKIVGMMA  382 (472)
T ss_dssp             ----HHHTTSCBCCCCTTTTCHHHHHHHHHHH-HHHHH---TTHHHHHHHTHHHHHHHHHHGGGGSTTEEE-EEEETTEE
T ss_pred             ----HhcccCCccccCCCCCCHHHHHHHHHHH-HHHHH---hHHHHHHHHHHHHHHHHHHHHHhcCCCeEE-EEecCceE
Confidence                3331     1122333333333444444 21111   23444455 555555555544   333332 45555555


Q ss_pred             EEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEE--eecCHHHHHHHHHHHHHHHHHHh
Q 047983          153 VMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRIT--FAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~--~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                      .+.+. ++..+ +.++..  ........+.+.|.++||.+.|+.     +++|++  +..+++++++++++|.+++++..
T Consensus       383 ~i~~~-~~~~~-~~~~~~--~~~~~~~~~~~~l~~~Gv~v~~~g-----~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~  453 (472)
T 3hmu_A          383 SIALT-PNKAS-RAKFAS--EPGTIGYICRERCFANNLIMRHVG-----DRMIISPPLVITPAEIDEMFVRIRKSLDEAQ  453 (472)
T ss_dssp             EEEEC-SCGGG-TCCBSS--CTTHHHHHHHHHHHHTTBCCEEET-----TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEe-cCccc-cccccc--hhHHHHHHHHHHHHHCCcEEEecC-----CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            54111 11100 000000  000013444555667899999863     799999  45599999999999999988764

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.67  E-value=2.3e-16  Score=138.80  Aligned_cols=188  Identities=13%  Similarity=0.095  Sum_probs=112.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||++||+||+|.+|.+++... .+...+....+   .|+||.++ +| +|+||+++++  ++++.  +.  
T Consensus       236 ~~l~~l~~~~g~llI~DEv~~g~g~~g~~~-~~~~~~~~~di---~t~sK~l~-~G~~~~G~v~~~~--~~~~~--l~--  304 (433)
T 1z7d_A          236 QGVYDICKKYNVLFVADEVQTGLGRTGKLL-CVHHYNVKPDV---ILLGKALS-GGHYPISAVLAND--DIMLV--IK--  304 (433)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTTTSSSS-GGGGGTCCCSE---EEECGGGG-TTSSCCEEEEECH--HHHTT--CC--
T ss_pred             HHHHHHHHHcCCEEEEecCccCCCcCCcch-hhHhcCCCCCE---EEECcccc-CCCCCeEEEEECH--HHHhh--hc--
Confidence            368999999999999999999876655321 11112222223   38999988 79 9999999987  44432  11  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcC----CCcccccCCCccEEEEE
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEI----PCITCPKKPEGSMFVMY  155 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~g~~~~~  155 (233)
                             ......+++.++..++++.+.+ +...+   .+..+.++++++++.+.|+++    +.... ..+ .|.++| 
T Consensus       305 -------~~~~~~t~~~~~~~~aaa~aal-~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~-~g~~~~-  370 (433)
T 1z7d_A          305 -------PGEHGSTYGGNPLAASICVEAL-NVLIN---EKLCENAEKLGGPFLENLKRELKDSKIVRD-VRG-KGLLCA-  370 (433)
T ss_dssp             -------TTCCCCTTTTCHHHHHHHHHHH-HHHHH---TTHHHHHHHHHHHHHHHHHHHHTTCTTEEE-EEE-ETTEEE-
T ss_pred             -------cccccccCCCCHHHHHHHHHHH-HHHHh---ccHHHHHHHHHHHHHHHHHHHHHhCCCeEE-EEe-eeeEEE-
Confidence                   1111222333333332333333 21111   234556666777777776553    22211 223 466677 


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHHh
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~  230 (233)
                              +.++...    .+..++... |.++||.+.|+    ..+++|+++.  .+++++++++++|.+++++..
T Consensus       371 --------i~~~~~~----~~~~~~~~~-l~~~Gv~v~~~----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~  430 (433)
T 1z7d_A          371 --------IEFKNEL----VNVLDICLK-LKENGLITRDV----HDKTIRLTPPLCITKEQLDECTEIIVKTVKFFD  430 (433)
T ss_dssp             --------EEECTTT----CCHHHHHHH-HHHTTEECCEE----TTTEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             --------EEEccCh----hHHHHHHHH-HHHCCeEEecC----CCCEEEEECCcCCCHHHHHHHHHHHHHHHHHHH
Confidence                    4443210    124444444 45679999985    2579999776  489999999999999988764

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.67  E-value=3.1e-15  Score=128.18  Aligned_cols=200  Identities=14%  Similarity=0.037  Sum_probs=123.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccC-CCCceEEEEEecCCCcccccc-chhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWI-VPGWRLGWLVTSDPNGILQDL-GVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~R~G~~~~~~~~~~~~~~-~~~~   78 (233)
                      ++|.++|++||+++|+||+|+....    ...+   ...+..+++.|+||.++ .+|  +||+++++  ++++.+ .-..
T Consensus       147 ~~i~~l~~~~~~~li~D~a~~~~~~----~~~~---~~~~~d~~~~s~~K~~~~~~g--~g~~~~~~--~~~~~~~~~~~  215 (384)
T 3zrp_A          147 KDVINKIRKYVELIVVDGVSSVGAE----EVKA---EEWNVDVYLTASQKALGSAAG--LGLLLLSP--KALSILDSQNS  215 (384)
T ss_dssp             HHHHHHHGGGEEEEEEECTTTTTTS----CCCT---TTTTCSEEEEETTSTTCCCSS--EEEEEECH--HHHHHHHHCCC
T ss_pred             HHHHHHHHhcCCEEEEECcccccCc----cccc---cccCCCEEEecCcccccCCCc--eEEEEECH--HHHHHhcCCCC
Confidence            3789999999999999999885321    1112   22245589999999764 444  99999987  444321 0000


Q ss_pred             hhhhhh-HHhhhhh-------hhhcc-CcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC
Q 047983           79 FHSISL-NMRMDDY-------LLLSE-SVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE  148 (233)
Q Consensus        79 ~~~~~~-~~~~~~~-------~~~~~-~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  148 (233)
                      ...... .......       ..... +++... .++...+.......+++.++.++++++++.+.|+++ ++.. ..+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~  293 (384)
T 3zrp_A          216 IAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLEI-VARR  293 (384)
T ss_dssp             SCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB-SCSS
T ss_pred             CCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeE-ccCc
Confidence            000000 0111110       00111 222222 333333322222347889999999999999999887 5554 4444


Q ss_pred             ----ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHH
Q 047983          149 ----GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRM  222 (233)
Q Consensus       149 ----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l  222 (233)
                          ++.++|         +.++.     . +..++. +.|.++||.+.||..+.. +++|+++..  +++++++++++|
T Consensus       294 ~~~~~~~~~~---------~~~~~-----~-~~~~~~-~~l~~~gi~v~~g~~~~~-~~iRi~~~~~~~~e~i~~~~~~l  356 (384)
T 3zrp_A          294 PESYSNTVTG---------VILKV-----A-DPQKVL-AGTVNEGVEFAPGVHPAF-KYFRIGHMGWVTPNDAIIAISVI  356 (384)
T ss_dssp             GGGBCSSEEE---------EECSS-----S-CHHHHH-HHHHTTTCCCEECCCTTC-CEEEEECCSSCCHHHHHHHHHHH
T ss_pred             ccccCccEEE---------EECCC-----C-CHHHHH-HHHHHCCEEEecCCCCCc-CEEEEeccccCCHHHHHHHHHHH
Confidence                567777         44432     1 244444 445566999999875433 899999884  899999999999


Q ss_pred             HHHHHHHh
Q 047983          223 KAFYYRHA  230 (233)
Q Consensus       223 ~~~l~~~~  230 (233)
                      .+++++..
T Consensus       357 ~~~l~~~~  364 (384)
T 3zrp_A          357 ERTLRKLG  364 (384)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHcC
Confidence            99998764

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.67  E-value=2e-15  Score=129.43  Aligned_cols=193  Identities=14%  Similarity=-0.008  Sum_probs=122.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++ |+||+|+.    +..+..+..   .+..+++.|+||.++.+|  +||+++++.. .++.  ..  +
T Consensus       158 ~~i~~l~~~~~~~-i~D~a~~~----g~~~~~~~~---~~~di~~~s~sK~~g~~g--~G~~~~~~~~-~l~~--~~--~  222 (382)
T 4eb5_A          158 EEISEVLAGKAAL-HIDATASV----GQIEVDVEK---IGADMLTISSNDIYGPKG--VGALWIRKEA-KLQP--VI--L  222 (382)
T ss_dssp             HHHHHHHTTSSEE-EEECTTTB----TTBCCCHHH---HTCSEEEEETGGGTCCSS--CEEEEEETTC-CCCC--SS--C
T ss_pred             HHHHHHHHHCCCE-EEEcchhc----CCcccCccc---cCCCEEEeehHHhcCCCc--eEEEEEcccc-ccCc--ee--c
Confidence            3789999999999 99999983    212122222   234588999999877666  7999998731 1211  11  0


Q ss_pred             hhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCc---cEEEEEe
Q 047983           81 SISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEG---SMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---g~~~~~~  156 (233)
                      ..   ...... ..+ +++... .++...++ ...+.+++.++.++++++.+.+.|++++++.. ..|.+   +.+++  
T Consensus       223 ~~---~~~~~~-~~~-~~~~~~~~~~~~al~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~--  293 (382)
T 4eb5_A          223 GG---GQENGL-RSG-SENVPSIVGFGKAAE-ITAMEWREEAERLRRLRDRIIDNVLKIEESYL-NGHPEKRLPNNVN--  293 (382)
T ss_dssp             SS---CTGGGT-SCS-CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEE-CSCSSSBCTTEEE--
T ss_pred             CC---Cccccc-cCC-CccHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEE-eCCcccCCCCEEE--
Confidence            00   000111 111 122222 33332222 22345788899999999999999998876654 34432   44556  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-------------------CCcEEEEeec--CHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-------------------KDWLRITFAV--EPSAF  215 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------~~~~Rl~~~~--~~~~l  215 (233)
                             ++++     +. +..++. +.|.++||.+.||..|..                   .+++|++++.  +++++
T Consensus       294 -------~~~~-----~~-~~~~~~-~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i  359 (382)
T 4eb5_A          294 -------VRFS-----YI-EGESIV-LSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDV  359 (382)
T ss_dssp             -------EEET-----TS-CHHHHH-HHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHH
T ss_pred             -------EEeC-----Cc-CHHHHH-HHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHH
Confidence                   4443     11 244444 455678999999987542                   4799999994  89999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 047983          216 EIGLGRMKAFYYRHAK  231 (233)
Q Consensus       216 ~~~~~~l~~~l~~~~~  231 (233)
                      ++++++|.+++++.++
T Consensus       360 ~~~~~~l~~~~~~~~~  375 (382)
T 4eb5_A          360 DRLLEVLPGVIERLRS  375 (382)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999987754

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.67  E-value=1.1e-16  Score=140.19  Aligned_cols=192  Identities=14%  Similarity=0.029  Sum_probs=105.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++||++||+||+|.+| ..+.. ......+...   .+.|+||.++ +|+|+||+++++  ++++.+.-.    
T Consensus       224 ~l~~l~~~~~~~li~DEv~~g~-~~g~~-~~~~~~~~~~---di~t~sK~~~-~G~~~G~~~~~~--~~~~~~~~~----  291 (427)
T 3fq8_A          224 GLREITLEHDALLVFDEVITGF-RIAYG-GVQEKFGVTP---DLTTLGKIIG-GGLPVGAYGGKR--EIMQLVAPA----  291 (427)
T ss_dssp             HHHHHHHHTTCEEEEECTTTBT-TTBTT-HHHHHTTCCC---SEEEECGGGG-TTSSCEEEEECH--HHHTTBTTT----
T ss_pred             HHHHHHHHcCCEEEEecccccc-ccCcc-hhhHhcCCCC---Chhhhhhhhh-CCcceEEEEEcH--HHHHhhccC----
Confidence            6899999999999999999988 55432 1111112111   2468999988 799999999977  444321100    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEEEec
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~~~  157 (233)
                          .......+++.++..++++.+.+ +...+   +...+.++++++.+.+.|++    ++...  ..+..|.++|   
T Consensus       292 ----~~~~~~~t~~~~~~~~aa~~aal-~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~g~~~~---  358 (427)
T 3fq8_A          292 ----GPMYQAGTLSGNPLAMTAGIKTL-ELLRQ---PGTYEYLDQITKRLSDGLLAIAQETGHAA--CGGQVSGMFG---  358 (427)
T ss_dssp             ----SSBCCCCTTTTCHHHHHHHHHHH-HHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTTCCC--EEEEETTEEE---
T ss_pred             ----CCccccCCCCcCHHHHHHHHHHH-HHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCCe--EEEEeeeEEE---
Confidence                00001112222233332334433 21111   12333444444444444433    32221  2233466777   


Q ss_pred             CCCcccccccccccC-----CCCC--hHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLE-----GINS--DTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~-----~~~~--~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~  228 (233)
                            +.++.....     ...+  ....+.+.|.++||.+.|++.    .++|+++..+++++++++++|.+++++
T Consensus       359 ------~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~----~r~~~~~~~t~e~i~~~l~~l~~~l~~  426 (427)
T 3fq8_A          359 ------FFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF----EAGFTSLAHTEEDIDATLAAARTVMSA  426 (427)
T ss_dssp             ------EESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT----SCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ------EEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCC----CCEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence                  333211000     0000  123455556678999999753    366777777999999999999998865

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.66  E-value=4.3e-16  Score=136.42  Aligned_cols=182  Identities=10%  Similarity=0.058  Sum_probs=112.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++|+||+|.+|.+.+.. ..+...+...+++   |+||.++ +| +|+||+++++  ++++       
T Consensus       229 ~~i~~l~~~~~~~li~De~~~~~g~~g~~-~~~~~~~~~~d~~---t~sK~l~-~G~~~iG~~~~~~--~~~~-------  294 (429)
T 1s0a_A          229 KRIRKICDREGILLIADEIATGFGRTGKL-FACEHAEIAPDIL---CLGKALT-GGTMTLSATLTTR--EVAE-------  294 (429)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTTTSSS-SGGGGGTCCCSEE---EECGGGG-TSSSCCEEEEECH--HHHH-------
T ss_pred             HHHHHHHHHcCCEEEEeehhhCCcccchH-HHhhhcCCCCCEE---Eeccccc-CCCccceEEEeCH--HHHH-------
Confidence            36899999999999999999988655432 1222222223333   7999977 58 9999999987  3432       


Q ss_pred             hhhhhHHhhhh--------hhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccccCCC
Q 047983           80 HSISLNMRMDD--------YLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEI---PCITCPKKPE  148 (233)
Q Consensus        80 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~  148 (233)
                             .+..        ..+++.++..+.++.+.+ +.. .+  ....+.++++++++.+.|+++   +.+.. ..+.
T Consensus       295 -------~l~~~~~~~~~~~~t~~~n~~~~~a~~aal-~~~-~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~-~~~~  362 (429)
T 1s0a_A          295 -------TISNGEAGCFMHGPTFMGNPLACAAANASL-AIL-ES--GDWQQQVADIEVQLREQLAPARDAEMVAD-VRVL  362 (429)
T ss_dssp             -------HHHTSTTSSCSCCCTTTTCHHHHHHHHHHH-HHH-HT--CHHHHHHHHHHHHHHHHHGGGGGCTTEEE-EEEE
T ss_pred             -------HhhcCCCcccccCCCCCCCHHHHHHHHHHH-HHH-Hh--CCHHHHHHHHHHHHHHHHHHHhcCCCEEE-EEEe
Confidence                   2221        112222333332333333 211 11  234566777788888888764   33321 3344


Q ss_pred             ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHH
Q 047983          149 GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l  226 (233)
                       |.|+|         +.++..    . +..++... |.++||.+.|+     .+++|++++  .+++++++++++|.+++
T Consensus       363 -g~~~~---------~~~~~~----~-~~~~l~~~-l~~~Gi~v~~~-----~~~iRis~~~~~t~e~i~~~~~~l~~~~  421 (429)
T 1s0a_A          363 -GAIGV---------VETTHP----V-NMAALQKF-FVEQGVWIRPF-----GKLIYLMPPYIILPQQLQRLTAAVNRAV  421 (429)
T ss_dssp             -TTEEE---------EEESSC----B-CHHHHHHH-HHHTTEECCCB-----TTEEEECCCTTCCHHHHHHHHHHHHHHT
T ss_pred             -eEEEE---------EEECCc----c-cHHHHHHH-HHHCCCEEecc-----CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence             45777         444311    1 24445544 44789999884     279999965  48999999999999887


Q ss_pred             HHH
Q 047983          227 YRH  229 (233)
Q Consensus       227 ~~~  229 (233)
                      ++.
T Consensus       422 ~~~  424 (429)
T 1s0a_A          422 QDE  424 (429)
T ss_dssp             SSG
T ss_pred             Hhh
Confidence            654

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.66  E-value=4.3e-15  Score=128.14  Aligned_cols=204  Identities=12%  Similarity=-0.016  Sum_probs=123.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh--
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF--   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~--   78 (233)
                      ++|+++|+++|++||+||+|..   +. .+..+   ...+..+++.|++|.++. +.++||+++++  .+++.+...+  
T Consensus       163 ~~i~~l~~~~~~~li~Dea~~~---g~-~~~~~---~~~~~d~~~~s~~K~~~~-~~g~g~~~~~~--~~~~~~~~~~~~  232 (396)
T 2ch1_A          163 EGVGQICHQHDCLLIVDAVASL---CG-VPFYM---DKWEIDAVYTGAQKVLGA-PPGITPISISP--KALDVIRNRRTK  232 (396)
T ss_dssp             TTHHHHHHHTTCEEEEECTTTB---TT-BCCCT---TTTTCCEEECCCC-CCCC-CSSCEEEEECH--HHHHHHHTCSSC
T ss_pred             HHHHHHHHHcCCEEEEEccccc---cC-Cccch---hhcCcCEEEEcCCccccC-CCCeEEEEECH--HHHHhhhhccCc
Confidence            5799999999999999999983   21 22222   222223667899996443 24459999976  3442110000  


Q ss_pred             hhh-hhhHHhhhhhh------hhc-cCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCc
Q 047983           79 FHS-ISLNMRMDDYL------LLS-ESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEG  149 (233)
Q Consensus        79 ~~~-~~~~~~~~~~~------~~~-~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  149 (233)
                      ... .......+.+.      ... .+.+... .++...++...++++++.++.++++++++.+.|+++ ++.. ..|.+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~  310 (396)
T 2ch1_A          233 SKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLDI-FVKDP  310 (396)
T ss_dssp             CSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCB-SSCSG
T ss_pred             ccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCee-ccCCc
Confidence            000 00000000000      111 1122222 333333333233567888999999999999999887 5554 45554


Q ss_pred             c----EEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEe-e-c-CHHHHHHHHHHH
Q 047983          150 S----MFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITF-A-V-EPSAFEIGLGRM  222 (233)
Q Consensus       150 g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~-~-~-~~~~l~~~~~~l  222 (233)
                      +    .++|         ++++.    +. +..++..++++++||.+.||..+...+++|+++ + . +++++++++++|
T Consensus       311 ~~~~~~~~~---------~~~~~----~~-~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l  376 (396)
T 2ch1_A          311 RHRLPTVTG---------IMIPK----GV-DWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGF  376 (396)
T ss_dssp             GGBCTTEEE---------EECCT----TC-CHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred             cccCCceEE---------EEcCC----CC-CHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHH
Confidence            3    3667         44431    12 355666666666799999998776788999999 4 2 788999999999


Q ss_pred             HHHHHHHh
Q 047983          223 KAFYYRHA  230 (233)
Q Consensus       223 ~~~l~~~~  230 (233)
                      .+++++..
T Consensus       377 ~~~l~~~~  384 (396)
T 2ch1_A          377 KESLKATH  384 (396)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99998764

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.66  E-value=2e-16  Score=134.91  Aligned_cols=188  Identities=11%  Similarity=-0.014  Sum_probs=116.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCcc--ccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHL--VFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~--~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++|++||++||+||+|...  .+.+.....+.  ...+  +++.|+||.++.++.  ||+++++  ++++.   + 
T Consensus       159 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~--~~~d--~~~~s~sK~~~~~~g--g~~~~~~--~~~~~---~-  226 (357)
T 3lws_A          159 ETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA--GLFD--SIYISFYKGLGGIAG--AILAGPA--AFCQT---A-  226 (357)
T ss_dssp             HHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH--TTSS--EEEEESSSTTCCSSC--EEEEECH--HHHHH---H-
T ss_pred             HHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH--hcCC--EEEEeccccCCCCce--EEEEcCH--HHHHH---H-
Confidence            36899999999999999998722  11122211111  1223  337899999844433  9999876  34421   1 


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                             ...+.....+.....+.  .+++++     +.+.+.+ +.+.++++.+.+.|++++++.....|.+++|+|  
T Consensus       227 -------~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~-~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~--  291 (357)
T 3lws_A          227 -------RIWKRRYGGDLISLYPYIVSADYYY-----ELRKDRM-GQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFH--  291 (357)
T ss_dssp             -------HHHHHHTTCCCSCCHHHHHHHHHHH-----HHHTTCH-HHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEE--
T ss_pred             -------HHHHHHhcCCcccchHHHHHHHHHH-----HHHHHHH-HHHHHHHHHHHHHHHhCCCCeeccCCCcceEEE--
Confidence                   22222111111112222  222222     1233333 346788889999999987776423567888999  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-CCcEEEEee-----cCHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-KDWLRITFA-----VEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~Rl~~~-----~~~~~l~~~~~~l~~~l  226 (233)
                             ++++...   . ++.+.+.+.|.++||.+.||..|.+ ..++|++++     .+.+++++++++|.+.+
T Consensus       292 -------~~~~~~~---~-~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          292 -------LHFDGQA---A-DISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             -------EEEESCH---H-HHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred             -------EEecCCh---H-HHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence                   5554210   0 1245567778889999999977764 358999987     37889999999998764

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.66  E-value=5.6e-16  Score=138.00  Aligned_cols=193  Identities=21%  Similarity=0.208  Sum_probs=113.4

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcccccc-ccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMG-VFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++|++||++||+||+|.+|..+|... .+. ..+-.+.++   ++||.++. | +|+||+++++  ++++.  +.  
T Consensus       246 ~l~~lc~~~gillI~DEv~~g~gr~G~~~-~~~~~~~v~pdi~---t~sK~l~~-G~~plg~v~~~~--~i~~~--~~--  314 (476)
T 3i5t_A          246 RFKAICEKHDILYISDEVVTGFGRCGEWF-ASEKVFGVVPDII---TFAKGVTS-GYVPLGGLAISE--AVLAR--IS--  314 (476)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTTTSSSC-HHHHTTCCCCSEE---EECGGGGT-TSSCCEEEEECH--HHHHT--TS--
T ss_pred             HHHHHHHHcCCEEEEEecccCCccccCce-eeecccCCCcchh---hhhhhhcC-CCcCeEEEEECH--HHHHH--Hh--
Confidence            68999999999999999999987776421 122 222222333   68999775 8 9999999987  44432  11  


Q ss_pred             hhhhhHHh------hhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccccCCCcc
Q 047983           80 HSISLNMR------MDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEI---PCITCPKKPEGS  150 (233)
Q Consensus        80 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~g  150 (233)
                            ..      +....+++.++..++++++.+ +. .++  +...+.++++.+++.+.|+.+   +.+.. ..+.|.
T Consensus       315 ------~~~~~~~~~~~~~t~~~np~a~aAa~aaL-~~-~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~v~~-v~~~G~  383 (476)
T 3i5t_A          315 ------GENAKGSWFTNGYTYSNQPVACAAALANI-EL-MER--EGIVDQAREMADYFAAALASLRDLPGVAE-TRSVGL  383 (476)
T ss_dssp             ------GGGCTTCEECCCCTTTTCHHHHHHHHHHH-HH-HHH--TTHHHHHHHHHHHHHHHHHTTTTSTTEEE-EEEETT
T ss_pred             ------cCCcccccccccCCCCcCHHHHHHHHHHH-HH-HHh--HHHHHHHHHHHHHHHHHHHHHhcCCCeEE-EEecCc
Confidence                  11      011122333333332444444 21 111  345566666666776666654   33332 345555


Q ss_pred             EEEEEecCCCccccccccccc--CCCCC---hHHHHHHHHhccCEEEECCcccCCCCcEEEE--eecCHHHHHHHHHHHH
Q 047983          151 MFVMYCGSEDKCLLKLNYSLL--EGINS---DTEFALKLAKEESIIVLPGITVGLKDWLRIT--FAVEPSAFEIGLGRMK  223 (233)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~--~~~~~~~l~~~~~~l~  223 (233)
                      + ++         +.+.....  ....+   ....+.+.|.++||.+.|..     +++|++  +..+++++++++++|.
T Consensus       384 ~-~~---------i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-----~~iRi~p~l~~t~e~i~~~l~~l~  448 (476)
T 3i5t_A          384 V-GC---------VQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPLG-----DLCVISPPLIISRAQIDEMVAIMR  448 (476)
T ss_dssp             E-EE---------EEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEET-----TEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             e-eE---------EEEecCccccccccchhHHHHHHHHHHHHCCCEEEecC-----CEEEEECCCCCCHHHHHHHHHHHH
Confidence            4 44         22211100  00000   13344455567799999842     799999  5569999999999999


Q ss_pred             HHHHHHhh
Q 047983          224 AFYYRHAK  231 (233)
Q Consensus       224 ~~l~~~~~  231 (233)
                      +++++..+
T Consensus       449 ~~l~~~~~  456 (476)
T 3i5t_A          449 QAITEVSA  456 (476)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987754

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.65  E-value=1.8e-16  Score=138.99  Aligned_cols=196  Identities=12%  Similarity=0.053  Sum_probs=105.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++|++||++||+||+|.+| ..+.. ......+....   +.|+||.++ +|+|+||+++++  ++++.+.-.    
T Consensus       225 ~l~~l~~~~~~lli~DEv~~g~-r~g~~-~~~~~~~~~pd---i~t~sK~~~-~G~~~G~~~~~~--~~~~~l~~~----  292 (429)
T 4e77_A          225 GLRALCDEFGALLIIDEVMTGF-RVALA-GAQDYYHVIPD---LTCLGKIIG-GGMPVGAFGGRR--EVMNALAPT----  292 (429)
T ss_dssp             HHHHHHHHHTCEEEEEETTTBT-TTBTT-CHHHHTTCCCS---EEEEEGGGG-TTSCCEEEEECH--HHHTTBTTT----
T ss_pred             HHHHHHHHcCCEEEEeccccCc-ccCcc-hHHHhcCCCCC---eeeeccccc-CCCCeEEEEECH--HHHHHhccC----
Confidence            6899999999999999999998 54432 11222222222   349999988 799999999987  444321100    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCCc
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDK  161 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (233)
                          .......+++.++..++++.+.+-....++..++.++.....++.+.+.+...+...  ..+..|.|+|       
T Consensus       293 ----~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~~~g~~~~-------  359 (429)
T 4e77_A          293 ----GPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPL--VVNHVGGMFG-------  359 (429)
T ss_dssp             ----SSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCC--EEEEETTEEE-------
T ss_pred             ----CCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCce--EEEEeeeEEE-------
Confidence                000111222333333324444331111122333333333333333333333343222  2233466777       


Q ss_pred             ccccccccc-c-------CCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHH
Q 047983          162 CLLKLNYSL-L-------EGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       162 ~~~~~~~~~-~-------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~  228 (233)
                        +.++... .       .+.......+.+.|.++||.+.|+..    ..+|+++..+++++++++++|.+++++
T Consensus       360 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~----~~~~~~~~~t~e~i~~~l~~l~~~l~~  428 (429)
T 4e77_A          360 --LFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAF----EAGFMSLAHSNEDIQKTVNAARRCFAK  428 (429)
T ss_dssp             --EECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTT----SCEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             --EEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecCC----CCEEEeccCCHHHHHHHHHHHHHHHHh
Confidence              3332110 0       00000123444555577999999752    467787777999999999999988753

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.65  E-value=9.5e-17  Score=137.30  Aligned_cols=183  Identities=13%  Similarity=0.102  Sum_probs=117.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccc-cchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD-LGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~-~~~~~~   79 (233)
                      ++|+++|++||++||+||+|+.+..+    .++..++   ..+++.|+||.++.++ |+||+++++  ++++. +.    
T Consensus       167 ~~i~~~~~~~~~~li~D~a~~~~~~~----~~~~~~~---~di~~~s~sK~~~~~~-~~G~~~~~~--~~~~~~~~----  232 (371)
T 2e7j_A          167 KKIAKVCSEYDVPLLVNGAYAIGRMP----VSLKEIG---ADFIVGSGHKSMAASG-PIGVMGMKE--EWAEIVLR----  232 (371)
T ss_dssp             HHHHHHHHTTTCCEEEECTTTBTTBC----CCHHHHT---CSEEEEEHHHHSSCCS-SCEEEEECT--TTTTTTTC----
T ss_pred             HHHHHHHHHcCCeEEEECccccCCCC----CChhhcC---CCEEEecCCcCCCCCC-CcEEEEEec--hhhhhhcc----
Confidence            37899999999999999999985432    1232222   3389999999877654 999999988  44432 11    


Q ss_pred             hhhhhHHhhhh-hhh---h-ccCcchH-HHHHHHHhhhcHHHHHHHHHHHH--HHHHHHHHHHhhcCCCcccccCCC--c
Q 047983           80 HSISLNMRMDD-YLL---L-SESVYTT-VGAVPQILEKTEEEFFSKITDIL--REAADICCDRLKEIPCITCPKKPE--G  149 (233)
Q Consensus        80 ~~~~~~~~~~~-~~~---~-~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~~~~~~~~~~~--~  149 (233)
                             .... ...   + ...++.. ..++...++. ...   +.++.+  +++++++.+.|+++ ++.. ..|.  .
T Consensus       233 -------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~---~~~~~~~~~~~~~~l~~~L~~~-~~~~-~~~~~~~  299 (371)
T 2e7j_A          233 -------RSEKYKNKEVELLGCTARGATIITLMASFPH-VRE---RIKRWDEEVEKARRFAAEMEKL-GIKQ-LGDNPHN  299 (371)
T ss_dssp             -------BCSSCTTSBGGGTTCCCCSHHHHHHHHHHHH-HHH---HGGGHHHHHHHHHHHHHHHHHT-TCEE-ESSSSCC
T ss_pred             -------ccccCcccccccccCCcCHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHc-CcEE-ecCCCcc
Confidence                   1111 000   0 1112222 1222222211 111   566777  88889999999887 5554 3342  3


Q ss_pred             cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC------CCcEE-EEee---cCHHHHHHHH
Q 047983          150 SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL------KDWLR-ITFA---VEPSAFEIGL  219 (233)
Q Consensus       150 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~~R-l~~~---~~~~~l~~~~  219 (233)
                      +.++|         ++++        +..+ +.+.|.++||.+.| ..|..      .+++| ++++   .+++++++++
T Consensus       300 ~~~~~---------~~~~--------~~~~-~~~~l~~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~  360 (371)
T 2e7j_A          300 HDLMF---------FHAE--------VLYE-ISKKAKGGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVL  360 (371)
T ss_dssp             SSEEE---------EECH--------HHHH-HHHHSSSGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHH
T ss_pred             CceEE---------EECC--------CHHH-HHHHHHHCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHHH
Confidence            55788         4443        1344 44455588999998 55532      68999 9999   5899999999


Q ss_pred             HHHHHHHHHH
Q 047983          220 GRMKAFYYRH  229 (233)
Q Consensus       220 ~~l~~~l~~~  229 (233)
                      ++|.++++++
T Consensus       361 ~~l~~~~~~~  370 (371)
T 2e7j_A          361 NAFKEIIEKY  370 (371)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.65  E-value=6.2e-16  Score=131.88  Aligned_cols=188  Identities=12%  Similarity=-0.043  Sum_probs=116.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++||++||+|++|..+...... .+...+..... +++.|+||.++.++.  ||+++++  ++++.   +    
T Consensus       162 ~l~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~~~~~~~d-~~~~s~sK~~~~~~g--g~~~~~~--~l~~~---~----  228 (359)
T 3pj0_A          162 KISEYCHEQGISLHLDGARLWEITPFYQ-KSAEEICALFD-SVYVSFYKGIGGIAG--AILAGND--DFVQE---A----  228 (359)
T ss_dssp             HHHHHHHHHTCEEEEEETTCGGGHHHHT-CCHHHHHTTCS-EEEEESSSTTCCSSC--EEEEECH--HHHHH---H----
T ss_pred             HHHHHHHHcCCEEEEECcchhcchhhhC-CCHHHhhccCC-EEEEeccccCCCcce--EEEECCH--HHHHH---H----
Confidence            5699999999999999998765421101 11211212122 445699998777643  7888776  34421   1    


Q ss_pred             hhhHHhhhhhhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           82 ISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                          ...+.....+.....+.  .+...+     +... +..+.+.++++.+.+.|++++++.....|.+++|+|     
T Consensus       229 ----~~~~~~~~~~~~~~~~~~~a~~~~l-----~~~~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~-----  293 (359)
T 3pj0_A          229 ----KIWKRRYGGDLISLYPYILSADYYF-----EKRI-GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFH-----  293 (359)
T ss_dssp             ----HHHHHHTTCCCSCCHHHHHHHHHHH-----HHHG-GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEE-----
T ss_pred             ----HHHHHHhCCCcchhHHHHHHHHHHH-----HHHH-HHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEE-----
Confidence                12121111122222222  222222     1222 333456888899999999987776423566788888     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEee-----cCHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFA-----VEPSAFEIGLGRMKAF  225 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~-----~~~~~l~~~~~~l~~~  225 (233)
                          ++++.+.  .  .+.+.+.+.|.++||.+.||..|+.  .+++|++++     .+.+++++++++|.+.
T Consensus       294 ----~~~~~~~--~--~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          294 ----VYFENSA--D--EIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             ----EEESSCH--H--HHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred             ----EEecCcc--c--hhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence                5554321  0  1356677778889999999988864  468999887     3788999999999765

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.65  E-value=1.3e-14  Score=125.53  Aligned_cols=203  Identities=8%  Similarity=-0.100  Sum_probs=123.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh--
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF--   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~--   78 (233)
                      ++|+++|++||+++|+||+++...    .+..+   ...+..+++.|++|.++. +.++||+++++  ++++.+.-.+  
T Consensus       158 ~~i~~l~~~~~~~li~Dea~~~~~----~~~~~---~~~~~d~~~~s~~K~l~~-~~g~g~~~~~~--~~~~~~~~~~~~  227 (411)
T 3nnk_A          158 AELGEICRRYDALFYTDATASLGG----NPLET---DVWGLDAVSAGMQKCLGG-PSGTSPITLSA--RMEEAIRRRKCV  227 (411)
T ss_dssp             TTHHHHHHHHTCEEEEECTTTBTT----BCCCT---TTTTCSEEECCSTTTTCC-CSSEEEEEECH--HHHHHHHTTCCC
T ss_pred             HHHHHHHHHcCCEEEEECCcccCC----cccch---hccCCcEEEecCccccCC-CCceEEEEECH--HHHHHHhhcccc
Confidence            579999999999999999987521    11112   222445899999997332 33589999987  4442111000  


Q ss_pred             ----------------hhhhhhH-Hhhh---hhhhhc-cCcchHH-HHHHHHhhhcHHHH-HHHHHHHHHHHHHHHHHHh
Q 047983           79 ----------------FHSISLN-MRMD---DYLLLS-ESVYTTV-GAVPQILEKTEEEF-FSKITDILREAADICCDRL  135 (233)
Q Consensus        79 ----------------~~~~~~~-~~~~---~~~~~~-~~~~~~~-~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~L  135 (233)
                                      ..+.... ....   ...... .+.+... .++...++ ...++ +++.++.++++++++.+.|
T Consensus       228 ~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~-~~~~~g~~~~~~~~~~~~~~l~~~L  306 (411)
T 3nnk_A          228 EEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECAR-LILQEGLDYGIARHKLHGDALVKGI  306 (411)
T ss_dssp             CGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHH-HHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence                            0000000 0000   000011 1122222 33333332 22333 7889999999999999999


Q ss_pred             hcCCCcccccCCCc---cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEe-ec-
Q 047983          136 KEIPCITCPKKPEG---SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITF-AV-  210 (233)
Q Consensus       136 ~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~-~~-  210 (233)
                      +++ ++.. ..+.+   +.++|         +.++.    +. +..++...+++++||.+.||......+++|+++ +. 
T Consensus       307 ~~~-g~~~-~~~~~~~~~~~~~---------~~~~~----~~-~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~  370 (411)
T 3nnk_A          307 QAM-GLET-FGDLKHKMNNVLG---------VVIPQ----GI-NGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYN  370 (411)
T ss_dssp             HHT-TCCB-CSCGGGBCSSEEE---------EECCT----TC-CHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGG
T ss_pred             HHc-CCEe-CCCcccccccEEE---------EECCC----CC-CHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCc
Confidence            887 5543 33443   66777         44432    11 355566666666699999986555578999998 52 


Q ss_pred             -CHHHHHHHHHHHHHHHHHHh
Q 047983          211 -EPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       211 -~~~~l~~~~~~l~~~l~~~~  230 (233)
                       +++++++++++|.+++++..
T Consensus       371 ~~~~~i~~~~~~l~~~l~~~~  391 (411)
T 3nnk_A          371 ARKDCVMTTLSALEAVLNYLK  391 (411)
T ss_dssp             CSHHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHcC
Confidence             78999999999999998753

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.65  E-value=2.3e-15  Score=132.79  Aligned_cols=194  Identities=16%  Similarity=0.089  Sum_probs=121.0

Q ss_pred             ChHHHHHHHcCcEEEEccccC-ccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYG-HLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||++||+||+|. ++.+.+..+.++.   .  .-+++.|+||.+  +|+|.||+++++  ++.+.   +  
T Consensus       203 ~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~---~--~di~~~s~sK~l--~G~~gG~i~~~~--~~~~~---l--  268 (447)
T 3h7f_A          203 AAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVP---H--ADVVSTTVHKTL--GGGRSGLIVGKQ--QYAKA---I--  268 (447)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTT---T--CSEEEEESSGGG--CCCSCEEEEECG--GGHHH---H--
T ss_pred             HHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCC---C--CcEEEecCCcCC--CCCCeEEEEECH--HHHHH---H--
Confidence            378999999999999999974 4555543322221   1  127799999986  488999999987  34321   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchH-HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcC----CCcccccCCCccEEEE
Q 047983           80 HSISLNMRMDDYLLLSESVYTT-VGAVPQILEKTEEEFFSKITDILREAADICCDRLKEI----PCITCPKKPEGSMFVM  154 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~g~~~~  154 (233)
                            .........+ +++.. ..+++..+.....+++++.++.+.++++.+.+.|++.    +++.....+.+++++|
T Consensus       269 ------~~~~~~~~~~-~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~  341 (447)
T 3h7f_A          269 ------NSAVFPGQQG-GPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVL  341 (447)
T ss_dssp             ------HHHHTTTTCS-SCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEE
T ss_pred             ------hhhcCCcccC-CccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEE
Confidence                  1111111112 22222 2333322222223466888899999999999999775    2444333345677888


Q ss_pred             EecCCCcccccccccccCCCCChHHHHHHHHhccCEEEE----CCcccCC--CCcEEEEee------cCHHHHHHHHHHH
Q 047983          155 YCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVL----PGITVGL--KDWLRITFA------VEPSAFEIGLGRM  222 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~~--~~~~Rl~~~------~~~~~l~~~~~~l  222 (233)
                               +.+...   +.  +.+.+.++|+++||.+.    |+..+++  .+++|++..      .++++++++++.|
T Consensus       342 ---------~~~~~~---~~--~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l  407 (447)
T 3h7f_A          342 ---------VDLRDS---PL--DGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADII  407 (447)
T ss_dssp             ---------EECTTS---SC--CHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHH
T ss_pred             ---------EEcCCC---CC--CHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHH
Confidence                     433211   12  56777888888999998    6643333  678999875      3578999999999


Q ss_pred             HHHHHHH
Q 047983          223 KAFYYRH  229 (233)
Q Consensus       223 ~~~l~~~  229 (233)
                      .+++.+.
T Consensus       408 ~~~l~~~  414 (447)
T 3h7f_A          408 ATALATG  414 (447)
T ss_dssp             HHHHHSG
T ss_pred             HHHHhcc
Confidence            9888654

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.65  E-value=3.1e-15  Score=127.78  Aligned_cols=192  Identities=16%  Similarity=-0.005  Sum_probs=119.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||+ ||+|++|+...    .+..+.   ..+..+++.|+||.++.+|  +|++++++.. .++  ...   
T Consensus       158 ~~i~~l~~~~~~-li~D~a~~~~~----~~~~~~---~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~-~~~--~~~---  221 (382)
T 4hvk_A          158 EEISEVLAGKAA-LHIDATASVGQ----IEVDVE---KIGADMLTISSNDIYGPKG--VGALWIRKEA-KLQ--PVI---  221 (382)
T ss_dssp             HHHHHHHSSSSE-EEEECTTTBTT----BCCCHH---HHTCSEEEEESGGGTSCTT--CEEEEEETTC-CCC--CSS---
T ss_pred             HHHHHHHHHcCE-EEEEhHHhcCC----CCCCch---hcCCCEEEEeHHHhcCCCc--eEEEEEcCcc-CcC--ccc---
Confidence            378999999999 99999987421    111221   1234589999999877666  7777777632 111  111   


Q ss_pred             hhhhHHhhhhhhhh-ccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCc---cEEEEE
Q 047983           81 SISLNMRMDDYLLL-SESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEG---SMFVMY  155 (233)
Q Consensus        81 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---g~~~~~  155 (233)
                           ......... ....+... .++...+. ...+++++.++.++++++++.+.|++++++.. ..+.+   +.+++ 
T Consensus       222 -----~~~~~~~~~~~~~~~~~~~~~~~~al~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~-  293 (382)
T 4hvk_A          222 -----LGGGQENGLRSGSENVPSIVGFGKAAE-ITAMEWREEAERLRRLRDRIIDNVLKIEESYL-NGHPEKRLPNNVN-  293 (382)
T ss_dssp             -----CSSCTGGGTSCSCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEE-CSCSSSBCTTEEE-
T ss_pred             -----ccCCCcCccccCCcCHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEE-eCCccccCCCEEE-
Confidence                 000000111 11122222 33323222 23457889999999999999999998877764 33433   23444 


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-------------------CCcEEEEeec--CHHH
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-------------------KDWLRITFAV--EPSA  214 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------~~~~Rl~~~~--~~~~  214 (233)
                              +.++     +.  +.+.+.+.|.++||.+.||+.|+.                   .+++|++++.  ++++
T Consensus       294 --------~~~~-----~~--~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~  358 (382)
T 4hvk_A          294 --------VRFS-----YI--EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDED  358 (382)
T ss_dssp             --------EEET-----TC--CHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHH
T ss_pred             --------EEEC-----CC--CHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHH
Confidence                    3332     11  344455667788999999987753                   4789999995  7899


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 047983          215 FEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       215 l~~~~~~l~~~l~~~~~  231 (233)
                      +++++++|++++++..+
T Consensus       359 i~~~~~~l~~~~~~~~~  375 (382)
T 4hvk_A          359 VDRLLEVLPGVIERLRS  375 (382)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999988754

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.65  E-value=2.6e-15  Score=130.36  Aligned_cols=192  Identities=14%  Similarity=0.113  Sum_probs=124.4

Q ss_pred             ChHHHHHHHcCcEEEEccccC-ccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYG-HLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||++||+||+|. ++.+.+..+.++.     ...+++.|+||.+  +|+|.||++++++ .+.        
T Consensus       182 ~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-----~~di~~~s~sK~l--~g~~~G~~~~~~~-~~~--------  245 (417)
T 3n0l_A          182 AKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-----YAHVVSSTTHKTL--RGPRGGIIMTNDE-ELA--------  245 (417)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-----TCSEEEEESSTTT--CSCSCEEEEESCH-HHH--------
T ss_pred             HHHHHHHHHcCCEEEEECccchhhhhcccCCCccc-----cceEEEeeCcccc--CCCCeeEEEECCH-HHH--------
Confidence            378999999999999999964 5555543332222     2338899999975  7889999999842 233        


Q ss_pred             hhhhhHHhhhhhhh--hccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           80 HSISLNMRMDDYLL--LSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        80 ~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                            ..+.....  ...+++... .+++..+.....+++.+.++.+.++++.+.+.|++. ++.....+..+.++|  
T Consensus       246 ------~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~--  316 (417)
T 3n0l_A          246 ------KKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR-KFKLVSDGTDNHLVL--  316 (417)
T ss_dssp             ------HHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEE--
T ss_pred             ------HHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCceEEE--
Confidence                  23322211  112223322 333333322233566888899999999999999884 554323334566778  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC------CCcEEEEeec------CHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL------KDWLRITFAV------EPSAFEIGLGRMKA  224 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~~Rl~~~~------~~~~l~~~~~~l~~  224 (233)
                             +.++..   +.  +...+.++|+++||.+.++..+..      .+.+|+++..      +++++++++++|.+
T Consensus       317 -------~~~~~~---~~--~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~  384 (417)
T 3n0l_A          317 -------MSFLDR---EF--SGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIAD  384 (417)
T ss_dssp             -------EECTTS---SS--CHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             -------EEcccC---CC--CHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHH
Confidence                   444311   11  566777888899999997653321      3569998762      47899999999999


Q ss_pred             HHHHH
Q 047983          225 FYYRH  229 (233)
Q Consensus       225 ~l~~~  229 (233)
                      ++++.
T Consensus       385 ~l~~~  389 (417)
T 3n0l_A          385 ILDDV  389 (417)
T ss_dssp             HHHTT
T ss_pred             HHhcc
Confidence            88653

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.65  E-value=8.8e-16  Score=135.33  Aligned_cols=187  Identities=11%  Similarity=0.130  Sum_probs=114.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||++||+||+|.+|.+++... .+...+....++   |+||.++ +| +|+||+++++  ++++.  +.   
T Consensus       248 ~l~~l~~~~gillI~DEv~~g~g~~g~~~-~~~~~~~~~Di~---t~sK~l~-~G~~~~G~v~~~~--~~~~~--l~---  315 (439)
T 2oat_A          248 GVRELCTRHQVLFIADEIQTGLARTGRWL-AVDYENVRPDIV---LLGKALS-GGLYPVSAVLCDD--DIMLT--IK---  315 (439)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTTTSSSS-GGGGGTCCCSEE---EECGGGG-TTSSCCEEEEECH--HHHTT--SC---
T ss_pred             HHHHHHHHcCCEEEEeccccCCccCCcch-hHHHhCCCCcEE---Eeccccc-CCCCCeEEEEECH--HHHhc--cC---
Confidence            68999999999999999999876655321 112222222233   9999977 48 9999999987  44432  11   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCP-KKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~g~~~~~~~~~  159 (233)
                            ......+++.++..++++.+.+ +. ..+  ....+.++++++++.+.|+++ +.... ..+..|.++|     
T Consensus       316 ------~~~~~~t~~~~~~~~aaa~aal-~~-~~~--~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~g~~~~-----  379 (439)
T 2oat_A          316 ------PGEHGSTYGGNPLGCRVAIAAL-EV-LEE--ENLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNA-----  379 (439)
T ss_dssp             ------TTSSCCSSTTCHHHHHHHHHHH-HH-HHH--TTHHHHHHHHHHHHHHHHTTS-CTTTEEEEEEETTEEE-----
T ss_pred             ------CCCcccCCCcCHHHHHHHHHHH-HH-Hhh--hhHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeeeEEE-----
Confidence                  1111122332222222333333 21 111  246678888899999999886 22211 1223466677     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~  228 (233)
                          +.++...  +. +..++..+ |.++||.+.|+.    .+++|+++.  .+++++++++++|.+++++
T Consensus       380 ----v~l~~~~--~~-~~~~l~~~-l~~~Gv~v~~~~----~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  438 (439)
T 2oat_A          380 ----IVIKETK--DW-DAWKVCLR-LRDNGLLAKPTH----GDIIRFAPPLVIKEDELRESIEIINKTILS  438 (439)
T ss_dssp             ----EEECCCS--SC-CHHHHHHH-HHHTTEECCBSS----SSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ----EEEecCc--cH-HHHHHHHH-HHHCCeEEecCC----CCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence                4443210  01 24445544 456799999852    589999776  4899999999999988754

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.65  E-value=5.7e-15  Score=128.54  Aligned_cols=190  Identities=13%  Similarity=0.073  Sum_probs=120.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|+...    .+..+   ...+..+++.|+||.++.+|  +||+++++  ...+.  +.   
T Consensus       183 ~~i~~l~~~~~~~li~Dea~~~~~----~~~~~---~~~~~di~~~s~sK~~g~~g--~G~~~~~~--~~~~~--~~---  246 (423)
T 3lvm_A          183 AAIGEMCRARGIIYHVDATQSVGK----LPIDL---SQLKVDLMSFSGHKIYGPKG--IGALYVRR--KPRVR--IE---  246 (423)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTT----SCCCT---TTSCCSEEEEESTTTTSCSS--CEEEEECB--TTBCC--CC---
T ss_pred             HHHHHHHHHcCCEEEEEhhhhcCC----CCcCh---hhcCCCEEEechHHhcCCCC--eEEEEEec--cccCC--CC---
Confidence            378999999999999999987622    11112   22244588999999888777  99999987  33322  11   


Q ss_pred             hhhhHHhhh---hhhhh-ccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCc---cEE
Q 047983           81 SISLNMRMD---DYLLL-SESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEG---SMF  152 (233)
Q Consensus        81 ~~~~~~~~~---~~~~~-~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---g~~  152 (233)
                           ....   ..... ....+... .++...+. ...+++++.++.++++++.+.+.|++++++.. ..+.+   +.+
T Consensus       247 -----~~~~~~~~~~~~~~~~~~~~~~~a~~~al~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~  319 (423)
T 3lvm_A          247 -----AQMHGGGHERGMRSGTLPVHQIVGMGEAYR-IAKEEMATEMERLRGLRNRLWNGIKDIEEVYL-NGDLEHGAPNI  319 (423)
T ss_dssp             -----CSSCSSCTTTTTCCSCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEE-ESCSTTBCTTE
T ss_pred             -----ccccCCcccccccCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE-eCCccccCCCe
Confidence                 0000   00011 11222222 33323222 22344788999999999999999988877764 33332   223


Q ss_pred             EEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-------------------CCcEEEEeec--C
Q 047983          153 VMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-------------------KDWLRITFAV--E  211 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------~~~~Rl~~~~--~  211 (233)
                      ++         +.++     +.  +...+.+.|.+  |.+.+|..|.+                   .+++|++++.  +
T Consensus       320 ~~---------~~~~-----~~--~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t  381 (423)
T 3lvm_A          320 LN---------VSFN-----YV--EGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTT  381 (423)
T ss_dssp             EE---------EEET-----TS--CHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCC
T ss_pred             EE---------EEeC-----CC--CHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCC
Confidence            33         2232     11  34444455555  99999877543                   3899999995  7


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 047983          212 PSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       212 ~~~l~~~~~~l~~~l~~~~~  231 (233)
                      ++++++++++|.+++++..+
T Consensus       382 ~e~i~~~~~~l~~~~~~~~~  401 (423)
T 3lvm_A          382 EEEIDYTIELVRKSIGRLRD  401 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhhc
Confidence            89999999999999987753

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.64  E-value=3.8e-15  Score=129.33  Aligned_cols=193  Identities=12%  Similarity=0.044  Sum_probs=121.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCc-cccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGH-LVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||++||+||+|.. +..++..+..+.     ...+++.|+||.++  |.|.||+++++.  + +  .+.  
T Consensus       187 ~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~-----~~di~~~s~sK~~~--g~~gg~~~~~~~--~-~--~~~--  252 (420)
T 3gbx_A          187 AKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP-----HAHVVTTTTHKTLA--GPRGGLILAKGG--D-E--ELY--  252 (420)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT-----TSSEEEEESSGGGC--SCSCEEEEESSC--C-H--HHH--
T ss_pred             HHHHHHHHHcCCEEEEECCcchhceecccCCcccc-----cCCEEEeecccCCC--CCCceEEEEcCC--c-H--HHH--
Confidence            3789999999999999999864 333332222221     13388999999875  455599999861  1 0  122  


Q ss_pred             hhhhhHHhhhhhhhh--ccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           80 HSISLNMRMDDYLLL--SESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                            ..+......  ..+++... .+++..+.....+++++.++.+.++++.+.+.|++. ++....++.+++++|  
T Consensus       253 ------~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~--  323 (420)
T 3gbx_A          253 ------KKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGTENHLFL--  323 (420)
T ss_dssp             ------HHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEE--
T ss_pred             ------HHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCCCCeEEE--
Confidence                  222222111  11222222 333322222234567888999999999999999885 554323335677788  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEEC-------CcccCCCCcEEEEeec------CHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLP-------GITVGLKDWLRITFAV------EPSAFEIGLGRMK  223 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-------g~~f~~~~~~Rl~~~~------~~~~l~~~~~~l~  223 (233)
                             +.++..   +  .+.+.+.+.|+++||.+.|       |..|+ .+.+|+++..      ++++++++++.|.
T Consensus       324 -------~~~~~~---~--~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~-~~~iRi~~~~~~~~~~~~~~i~~~~~~l~  390 (420)
T 3gbx_A          324 -------LDLVDK---N--LTGKEADAALGRANITVNKNSVPNDPKSPFV-TSGIRIGSPAVTRRGFKEAEVKELAGWMC  390 (420)
T ss_dssp             -------EECGGG---T--CCHHHHHHHHHHTTEECEEECCTTCSSCTTT-CSEEEEECHHHHHTTCCHHHHHHHHHHHH
T ss_pred             -------EEcCCC---C--CCHHHHHHHHHHCCcEeccccCCCCccccCC-CcceEEecchhcccCCCHHHHHHHHHHHH
Confidence                   444321   1  1566777788889999998       44444 3459999873      3688899999888


Q ss_pred             HHHHHH
Q 047983          224 AFYYRH  229 (233)
Q Consensus       224 ~~l~~~  229 (233)
                      +++++.
T Consensus       391 ~~l~~~  396 (420)
T 3gbx_A          391 DVLDNI  396 (420)
T ss_dssp             HHHHTT
T ss_pred             HHHhCc
Confidence            887653

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.64  E-value=2.3e-15  Score=129.41  Aligned_cols=193  Identities=11%  Similarity=0.112  Sum_probs=116.6

Q ss_pred             ChHHHHHH----HcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccch
Q 047983            1 FCIEETTK----KLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGV   76 (233)
Q Consensus         1 ~~i~~l~~----~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~   76 (233)
                      ++|+++|+    +||+++|+||+|+..    ..+..   +......+++.|+||. ..+|.++||+++++  ++++.+.-
T Consensus       174 ~~i~~l~~~~~~~~~~~li~Dea~~~g----~~~~~---~~~~~~d~~~~s~~K~-~~~~~g~G~~~~~~--~~~~~~~~  243 (390)
T 1elu_A          174 AEIMAVCRRHQGNYPVRVLVDGAQSAG----SLPLD---FSRLEVDYYAFTGHKW-FAGPAGVGGLYIHG--DCLGEINP  243 (390)
T ss_dssp             HHHHHHHHHCCSSSCCEEEEECTTTBT----TBCCC---TTTSCCSEEEEESSST-TCCCTTCEEEEECT--TTGGGCCC
T ss_pred             HHHHHHHhhhhhhcCcEEEEEcccccC----CcCCC---hhhcCCCEEEcccccc-ccCCCceEEEEECH--HhHhhcCC
Confidence            37899999    999999999999852    11111   2233456889999993 55567799999987  45542211


Q ss_pred             hhhh--hh------hhH---HhhhhhhhhccCcchHH-HHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 047983           77 AFFH--SI------SLN---MRMDDYLLLSESVYTTV-GAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITC  143 (233)
Q Consensus        77 ~~~~--~~------~~~---~~~~~~~~~~~~~~~~~-~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  143 (233)
                      ....  +.      ...   .....+ .. .+++... .++...++.. ...++++.++.++++++++.+.|++++++..
T Consensus       244 ~~~g~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  321 (390)
T 1elu_A          244 TYVGWRSITYGAKGEPTGWAEGGKRF-EV-ATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHC  321 (390)
T ss_dssp             CSCCTTTEEECTTSCEEEECSGGGGG-CC-SCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred             ccccCCcccccccCcccccccchHhh-CC-CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence            0000  00      000   000011 11 1122222 3232222211 1235788999999999999999988766654


Q ss_pred             cc--CCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHH
Q 047983          144 PK--KPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGL  219 (233)
Q Consensus       144 ~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~  219 (233)
                      +.  ++.++++.|          +++.    +. +..++..+ |.++||.+.||.   ..+++|+++.  .+++++++++
T Consensus       322 ~~~~~~~~~~~~~----------~~~~----~~-~~~~~~~~-l~~~gi~v~~~~---~~~~iRis~~~~~~~~~i~~~~  382 (390)
T 1elu_A          322 LATSAPQAGLVSF----------TVDS----PL-GHRAIVQK-LEEQRIYLRTIA---DPDCIRACCHYITDEEEINHLL  382 (390)
T ss_dssp             SCSSCCSSSEEEE----------EECS----SS-CHHHHHHH-HHHTTEECEEET---TTTEEEEECCTTCCHHHHHHHH
T ss_pred             ecCccccccEEEE----------EcCC----CC-CHHHHHHH-HHHCCEEEEecC---CCCeEEEecccCCCHHHHHHHH
Confidence            22  235666554          2321    11 24444444 567899999976   3589999986  4899999999


Q ss_pred             HHHHH
Q 047983          220 GRMKA  224 (233)
Q Consensus       220 ~~l~~  224 (233)
                      ++|.+
T Consensus       383 ~~l~~  387 (390)
T 1elu_A          383 ARLAD  387 (390)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            88864

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.64  E-value=7.6e-16  Score=135.67  Aligned_cols=187  Identities=14%  Similarity=0.086  Sum_probs=113.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||++||+||+|.+|.+.+.. ..+...+....++   |+||.++. | +|+||+++++  ++++       
T Consensus       243 ~~l~~l~~~~~~~li~Dev~~~~g~~g~~-~~~~~~~~~~di~---s~sK~l~~-G~~~~G~~~~~~--~~~~-------  308 (449)
T 3a8u_X          243 KRNREICNQHNILLVFDEVITGFGRTGSM-FGADSFGVTPDLM---CIAKQVTN-GAIPMGAVIAST--EIYQ-------  308 (449)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTTTSSS-SHHHHHTCCCSEE---EECGGGGT-TSSCCEEEEEEH--HHHH-------
T ss_pred             HHHHHHHHHhCCEEEEeccccCccccCcc-hhhhhcCCCCCEE---EEcccccC-CCCceEEEEECH--HHHH-------
Confidence            36899999999999999999987655532 1222222222333   89999874 7 9999999986  3442       


Q ss_pred             hhhhhHHhhhh------------hhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cC
Q 047983           80 HSISLNMRMDD------------YLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCP-KK  146 (233)
Q Consensus        80 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~  146 (233)
                             .+..            ..+++.++..++++.+.+ +. ..+  ....+.++++++.+.+.|++++.+... ..
T Consensus       309 -------~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal-~~-~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~  377 (449)
T 3a8u_X          309 -------TFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAAL-CL-LQK--ENLVQSVAEVAPHFEKALHGIKGAKNVIDI  377 (449)
T ss_dssp             -------HHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHH-HH-HHH--TTHHHHHHHHHHHHHHHHHTTTTSTTEEEE
T ss_pred             -------HhhccCcccccccccccCCCcccHHHHHHHHHHH-HH-HHh--cCHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence                   2221            112222222222333332 21 111  245677778888888888765333211 11


Q ss_pred             CCccEEEEEecCCCcccccccccccCCCC--ChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHH
Q 047983          147 PEGSMFVMYCGSEDKCLLKLNYSLLEGIN--SDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRM  222 (233)
Q Consensus       147 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l  222 (233)
                      +..|.++|         +.++...  ...  +..++... |.++||.+.|+.     +++|+++.  .+++++++++++|
T Consensus       378 ~~~g~~~~---------i~~~~~~--~~~~~~~~~~~~~-l~~~Gv~v~~~g-----~~iRis~~~~~t~~~i~~~l~~l  440 (449)
T 3a8u_X          378 RNFGLAGA---------IQIAPRD--GDAIVRPFEAGMA-LWKAGFYVRFGG-----DTLQFGPTFNSKPQDLDRLFDAV  440 (449)
T ss_dssp             EEETTEEE---------EEECCBT--TBSSHHHHHHHHH-HHHHTEECEEET-----TEEEECCCTTCCHHHHHHHHHHH
T ss_pred             eeeEEEEE---------EEEecCc--ccccccHHHHHHH-HHHCCcEEecCC-----CEEEEECCCcCCHHHHHHHHHHH
Confidence            23467788         5443211  000  01244444 446799999962     79999954  5899999999999


Q ss_pred             HHHHHHH
Q 047983          223 KAFYYRH  229 (233)
Q Consensus       223 ~~~l~~~  229 (233)
                      .+++++.
T Consensus       441 ~~~l~~~  447 (449)
T 3a8u_X          441 GEVLNKL  447 (449)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            9998753

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.64  E-value=5.5e-15  Score=125.65  Aligned_cols=196  Identities=10%  Similarity=-0.018  Sum_probs=117.9

Q ss_pred             ChHHHHHHHc-CcEEEEccccCccccCCCccccccccCCccCEEEEccCccccC-CCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKL-GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWI-VPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~-~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|.++|++| |+++|+|++|......    ..+.     +..+++.|+||.++ .+|  +|++++++  ++++++.-..
T Consensus       150 ~~i~~la~~~p~~~li~D~a~~~~~~~----~~~~-----~~d~~~~s~~K~~~~~~G--~g~~~~~~--~~~~~~~~~~  216 (362)
T 3ffr_A          150 EDINTFRDKNKDALIFVDAVSSLPYPK----FDWT-----KIDSVFFSVQKCFGLPAG--LGVWILND--RVIEKSKALL  216 (362)
T ss_dssp             HHHTTSGGGSTTSEEEEECTTTTTSSC----CCTT-----SCSEEEEETTSTTCCCSC--CEEEEEEH--HHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCEEEEecccccCCcc----cChh-----HCcEEEEecccccCCCCc--eEEEEECH--HHHHHhhhcc
Confidence            3688999999 9999999999864321    1121     13388999999988 788  46777776  4443211000


Q ss_pred             h----hh--hhhHHhhhhh--hhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC---
Q 047983           79 F----HS--ISLNMRMDDY--LLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKK---  146 (233)
Q Consensus        79 ~----~~--~~~~~~~~~~--~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~---  146 (233)
                      .    .+  .+........  .....+++... .++...++......+++.++.++++++.+.+.|++++++..+.+   
T Consensus       217 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  296 (362)
T 3ffr_A          217 AKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAK  296 (362)
T ss_dssp             HTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGG
T ss_pred             ccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChh
Confidence            0    00  0000000000  00011222222 33333332112223678889999999999999998877664221   


Q ss_pred             CCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 047983          147 PEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKA  224 (233)
Q Consensus       147 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~  224 (233)
                      +.+++.+|         +.++.       +..++... |.++||.+.||..+...+++|+++..  ++++++++++.|++
T Consensus       297 ~~~~~~~~---------~~~~~-------~~~~~~~~-l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~  359 (362)
T 3ffr_A          297 LRSMTTIV---------ANTTM-------LPGEINKI-LEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKE  359 (362)
T ss_dssp             GBCSSEEE---------EEESS-------CHHHHHHH-HGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             hcCCceEE---------EecCC-------CHHHHHHH-HHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            12456677         44431       24555555 45559999999777668899999985  78888888888876


Q ss_pred             HH
Q 047983          225 FY  226 (233)
Q Consensus       225 ~l  226 (233)
                      ++
T Consensus       360 ~~  361 (362)
T 3ffr_A          360 KI  361 (362)
T ss_dssp             HT
T ss_pred             Hh
Confidence            53

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.62  E-value=2.4e-14  Score=124.07  Aligned_cols=202  Identities=12%  Similarity=0.044  Sum_probs=122.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccc-cCCCCceEEEEEecCCCccccccchh--
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKR-WIVPGWRLGWLVTSDPNGILQDLGVA--   77 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~R~G~~~~~~~~~~~~~~~~~--   77 (233)
                      ++|+++|++||+++|+|++|+....    +..+   ...+..+++.|++|. ++.+  ++||+++++  .+++.+.-.  
T Consensus       156 ~~i~~l~~~~~~~li~D~a~~~~~~----~~~~---~~~~~d~~~~s~~K~l~g~~--g~g~~~~~~--~~~~~~~~~~~  224 (416)
T 3isl_A          156 KAIGEACRTEDALFIVDAVATIGGC----EVKV---DEWKIDAAIGGTQKCLSVPS--GMAPITYNE--RVADVIAARKK  224 (416)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTS----CCCT---TTTTCSEEECCSSSTTCCCS--SEEEEEECH--HHHHHHHTC--
T ss_pred             HHHHHHHHHcCCEEEEECCccccCC----Ccch---hhcCCCEEEecCccccCCCC--CeEEEEECH--HHHHHhhcccc
Confidence            3789999999999999999874221    1112   222345889999996 4444  589999987  444321100  


Q ss_pred             ------------------hhhhhhhH-Hhhh---hhhhhcc-CcchHH-HHHHHHhhhcHHHH-HHHHHHHHHHHHHHHH
Q 047983           78 ------------------FFHSISLN-MRMD---DYLLLSE-SVYTTV-GAVPQILEKTEEEF-FSKITDILREAADICC  132 (233)
Q Consensus        78 ------------------~~~~~~~~-~~~~---~~~~~~~-~~~~~~-~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~  132 (233)
                                        ........ ....   ....+.. +.+... .++...+. ...++ +++.++.++++++++.
T Consensus       225 ~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~-~~~~~g~~~~~~~~~~~~~~l~  303 (416)
T 3isl_A          225 VERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVR-LVLEEGLETRFERHRHHEAALA  303 (416)
T ss_dssp             ----------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHH-HHHHHCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHH
Confidence                              00000000 0000   0011111 122222 33333332 23344 7889999999999999


Q ss_pred             HHhhcCCCcccccCCCc---cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee
Q 047983          133 DRLKEIPCITCPKKPEG---SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA  209 (233)
Q Consensus       133 ~~L~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~  209 (233)
                      +.|+++ ++.. ..|.+   +.+++         +.++..    . +..++...+++++||.+.||......+++|+++.
T Consensus       304 ~~L~~~-g~~~-~~~~~~~~~~~~~---------~~~~~~----~-~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~  367 (416)
T 3isl_A          304 AGIKAM-GLRL-FGDDSCKMPVVTC---------VEIPGG----I-DGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTM  367 (416)
T ss_dssp             HHHHHT-TCCB-CSCGGGBCTTEEE---------EECCTT----C-CHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECC
T ss_pred             HHHHHc-CCEe-ccCccccCCcEEE---------EeCCCC----C-CHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecc
Confidence            999886 5554 34443   55666         444321    1 3556666665566999999875555789999994


Q ss_pred             ---cCHHHHHHHHHHHHHHHHHHh
Q 047983          210 ---VEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       210 ---~~~~~l~~~~~~l~~~l~~~~  230 (233)
                         .+++++++++++|.++++++.
T Consensus       368 ~~~~~~e~i~~~~~~l~~~~~~~~  391 (416)
T 3isl_A          368 GYSCRKENVLFVLAGLEAVLLRHN  391 (416)
T ss_dssp             GGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHcC
Confidence               245559999999999998763

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.62  E-value=4.9e-16  Score=136.33  Aligned_cols=196  Identities=13%  Similarity=0.081  Sum_probs=110.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||++||+||+|++| ..+.. ..+...+....   +.|+||.++. |+|+||+++++  ++++.+.-.   
T Consensus       227 ~~l~~l~~~~g~~lI~DEv~~g~-~~g~~-~~~~~~~~~~d---i~s~sK~l~~-G~~~G~v~~~~--~~~~~l~~~---  295 (434)
T 2epj_A          227 AALQRLSRESGALLILDEVVTGF-RLGLE-GAQGYFNIEGD---IIVLGKIIGG-GFPVGAVAGSR--EVMSLLTPQ---  295 (434)
T ss_dssp             HHHHHHHHHHTCEEEEEETTTTT-TSSTT-HHHHHHTCCCS---EEEEEGGGGT-TSSCEEEEECH--HHHTTBTTT---
T ss_pred             HHHHHHHHHcCCEEEEEcchhce-eCCcc-hhhHHhCCCCC---eeeecchhcC-CcceeeeeecH--HHHHhhccC---
Confidence            36899999999999999999987 43321 11111221122   3499999886 99999999987  444321000   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP---CITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~~  157 (233)
                           .......+++.++..++++.+.+ +. .++  .+..+.++++++++.+.|+++.   ++.....+ .|.++|   
T Consensus       296 -----~~~~~~~t~~~~~~~~aa~~a~l-~~-~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~~~---  362 (434)
T 2epj_A          296 -----GKVFNAGTFNAHPITMAAGLATL-KA-LEE--EPVYSVSREAAKALEEAASEVLDRTGLPYTINR-VESMMQ---  362 (434)
T ss_dssp             -----SSBCCCCTTTTCHHHHHHHHHHH-HH-HHH--SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEE-ETTEEE---
T ss_pred             -----CCcccCCCCCcCHHHHHHHHHHH-HH-HHh--cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEE-eeeEEE---
Confidence                 00001112222222322333332 21 111  3345666666666666665531   22111233 455677   


Q ss_pred             CCCcccccccccccC-------CCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          158 SEDKCLLKLNYSLLE-------GINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                            +.++.....       ........+.+.|.++||.+.||..    .++|+++..+++++++++++|.+++++..
T Consensus       363 ------i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----~~~~~~~~~t~e~i~~~l~~l~~~l~~~~  432 (434)
T 2epj_A          363 ------LFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNL----EAVFTGLPHQGEALEIAVEGLRSSLKTVL  432 (434)
T ss_dssp             ------EEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT----SCEECCTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred             ------EEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCC----CcEEEeccCCHHHHHHHHHHHHHHHHHHh
Confidence                  443310000       0000233444555578999999752    46788877799999999999999998764

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.62  E-value=5e-15  Score=126.17  Aligned_cols=191  Identities=16%  Similarity=0.008  Sum_probs=116.8

Q ss_pred             HHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhhhhhH
Q 047983            6 TTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLN   85 (233)
Q Consensus         6 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      ++++||++||+||+|+.+...    .++..+   +  +++.|+||.++.+|  +||+++++  ++++.+.-.  ..-...
T Consensus       161 i~~~~~~~li~D~a~~~~~~~----~~~~~~---d--i~~~s~sK~~~~~G--~G~~~~~~--~~~~~~~~~--~~~~~~  225 (360)
T 1w23_A          161 FPEINHAPLIADMSSDILSRP----LKVNQF---G--MIYAGAQKNLGPSG--VTVVIVKK--DLLNTKVEQ--VPTMLQ  225 (360)
T ss_dssp             CCCCCSSCEEEECTTTTTSSC----CCGGGC---S--EEEEETTTTTSCTT--CEEEEEEH--HHHCSCCTT--CCGGGC
T ss_pred             ccccCCceEEEechhhcCCCC----cCcccC---C--EEEEEcccccCCCC--cEEEEEcH--HHHhhcccC--Ccchhh
Confidence            344799999999999875321    223222   2  78999999998777  99999987  454321110  000000


Q ss_pred             Hhhhhhhhhcc-CcchHH-HHHHHHhhhcHHH-HHHHHHHHHHHHHHHHHHHhhcCCCc-ccccCC--CccEEEEEecCC
Q 047983           86 MRMDDYLLLSE-SVYTTV-GAVPQILEKTEEE-FFSKITDILREAADICCDRLKEIPCI-TCPKKP--EGSMFVMYCGSE  159 (233)
Q Consensus        86 ~~~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~--~~g~~~~~~~~~  159 (233)
                      ........... +++... .++...++...+. .++++++.++++++++.+.|++++++ ..+..|  .+++++|     
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-----  300 (360)
T 1w23_A          226 YATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVT-----  300 (360)
T ss_dssp             HHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEE-----
T ss_pred             hhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEE-----
Confidence            00000001111 122222 3333333221222 57889999999999999999988644 321123  3566888     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~  228 (233)
                          +.++..      .+...+.+.|.++||.+.||..+  .+++|++++.  +++++++++++|++++++
T Consensus       301 ----~~~~~~------~~~~~~~~~l~~~gi~~~~~~~~--~~~iRis~~~~~~~~~i~~~~~~l~~~~~~  359 (360)
T 1w23_A          301 ----FNLRNE------ELNQQFLAKAKEQGFVGLNGHRS--VGGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             ----EECSSH------HHHHHHHHHHHHTTEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ----EEcCCC------ccHHHHHHHHHHCCeeeecCCCC--CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence                544311      12333444567889999998765  5899999994  788999999999988754

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.61  E-value=2.5e-15  Score=133.22  Aligned_cols=183  Identities=10%  Similarity=0.048  Sum_probs=111.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++|++||++||+||+|.+|.+++.. ..+...+...+++   ||||.++...+|+||+++++  +++          
T Consensus       259 ~l~~l~~~~gillI~DEv~~g~gr~G~~-~a~~~~~~~pdii---t~sK~l~gG~~~lG~v~~~~--~i~----------  322 (457)
T 3tfu_A          259 DLRDICRRYEVLLIFDEIATGFGRTGAL-FAADHAGVSPDIM---CVGKALTGGYLSLAATLCTA--DVA----------  322 (457)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTTTSSS-STHHHHTCCCSEE---EECGGGGTTSSCCEEEEEEH--HHH----------
T ss_pred             HHHHHHHHcCCEEEEEcCccCCccccch-hHhHhcCCCceEE---EEChhhhCCCcceEEEEEcH--HHH----------
Confidence            6899999999999999999998766532 1222223333334   99998654337999999987  343          


Q ss_pred             hhhHHhhh--------hhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccccCCCcc
Q 047983           82 ISLNMRMD--------DYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEI---PCITCPKKPEGS  150 (233)
Q Consensus        82 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~g  150 (233)
                          ..+.        ...+++.++..++++++.+ +...+   +...+.++++.+++.+.|+++   +.+.. ..+. |
T Consensus       323 ----~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL-~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~-vr~~-G  392 (457)
T 3tfu_A          323 ----HTISAGAAGALMHGPTFMANPLACAVSVASV-ELLLG---QDWRTRITELAAGLTAGLDTARALPAVTD-VRVC-G  392 (457)
T ss_dssp             ----HHHHHSSSCSCCCCCTTTTCHHHHHHHHHHH-HHHHT---SCHHHHHHHHHHHHHHHHGGGGGSTTEEE-EEEC-S
T ss_pred             ----HHhhccCCCceeEecCCCcCHHHHHHHHHHH-HHHhh---hHHHHHHHHHHHHHHHHHHHHhcCCCeee-eecC-C
Confidence                2221        1122333333333444443 11111   234555666666666666654   33322 2344 5


Q ss_pred             EEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHH
Q 047983          151 MFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~  228 (233)
                      .+++         +.++.+    .  +...+.+.|.++||.+.|..     +++|++..  .+++++++++++|.+++++
T Consensus       393 ~~~~---------i~l~~~----~--~~~~~~~~l~~~Gv~v~~~~-----~~lRi~p~~~~t~eei~~~l~~L~~~l~~  452 (457)
T 3tfu_A          393 AIGV---------IECDRP----V--DLAVATPAALDRGVWLRPFR-----NLVYAMPPYICTPAEITQITSAMVEVARL  452 (457)
T ss_dssp             SCEE---------EEESSC----C--CHHHHHHHHHHTTEECCCBT-----TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eEEE---------EEECCc----c--cHHHHHHHHHHCCeEEEecC-----CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            5666         444321    1  23444444556799999843     78999854  4899999999999999986


Q ss_pred             Hh
Q 047983          229 HA  230 (233)
Q Consensus       229 ~~  230 (233)
                      ..
T Consensus       453 ~~  454 (457)
T 3tfu_A          453 VG  454 (457)
T ss_dssp             C-
T ss_pred             hc
Confidence            54

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.61  E-value=4.2e-15  Score=126.22  Aligned_cols=183  Identities=9%  Similarity=-0.022  Sum_probs=112.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCcccc--CCCccccccccCCccCEEEEccCccccCCCCceEE--EEEecCCCccccccch
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVF--GNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLG--WLVTSDPNGILQDLGV   76 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~--~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G--~~~~~~~~~~~~~~~~   76 (233)
                      ++|+++|++||++||+||+|..+..  .+..+ ....+.....++ +.|+||. +   .|+|  |+++++  ++++.+  
T Consensus       163 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~-~~~~~~~~~d~~-~~s~sK~-g---~~~G~g~~~~~~--~~~~~~--  232 (356)
T 1v72_A          163 EAIGDVCKSSSLGLHMDGSRFANALVSLGCSP-AEMTWKAGVDAL-SFGATKN-G---VLAAEAIVLFNT--SLATEM--  232 (356)
T ss_dssp             HHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT-TTTTGGGTCCEE-EECCGGG-T---CSSCEEEEESSG--GGHHHH--
T ss_pred             HHHHHHHHHcCCeEEEEchhhHhHhccCCCCH-HHhhhhhcCCEE-EEecccC-C---CcCccEEEEECH--HHHhhH--
Confidence            3689999999999999999986532  22211 111111122334 4589997 4   3556  888765  444311  


Q ss_pred             hhhhhhhhHHhhhhhhhhccCcchHHH--HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEE
Q 047983           77 AFFHSISLNMRMDDYLLLSESVYTTVG--AVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVM  154 (233)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~  154 (233)
                               ........ .........  .....++.   ....+..+.++++++++.+.|++++++.. ..|.+++++|
T Consensus       233 ---------~~~~~~~~-~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~~~~~~  298 (356)
T 1v72_A          233 ---------SYRRKRAG-HLSSKMRFLSAQIDAYLTD---DLWLRNARKANAAAQRLAQGLEGLGGVEV-LGGTEANILF  298 (356)
T ss_dssp             ---------HHHHHHTT-CCCSSTHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHTTCTTEEE-ESCCCSSEEE
T ss_pred             ---------HHHhhccC-chhhhHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHhhCCCcEE-ccCCCccEEE
Confidence                     11111111 111112211  12222222   22334567778899999999988767764 4677889999


Q ss_pred             EecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          155 YCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                               ++++          .++..+ |.++||.+.||. |+ .+++|+++..  +++++++++++|.+++++.
T Consensus       299 ---------~~~~----------~~~~~~-l~~~gi~v~~g~-~~-~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~  353 (356)
T 1v72_A          299 ---------CRLD----------SAMIDA-LLKAGFGFYHDR-WG-PNVVRFVTSFATTAEDVDHLLNQVRLAADRT  353 (356)
T ss_dssp             ---------EEEC----------HHHHHH-HHHTTCBCBCSS-SS-TTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred             ---------EEcC----------HHHHHH-HHhcCeEEeccc-cC-CCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence                     4442          244444 567799999987 65 7899999773  7899999999999887654

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.61  E-value=4e-15  Score=131.43  Aligned_cols=185  Identities=15%  Similarity=0.132  Sum_probs=110.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccc--hhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLG--VAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~--~~~   78 (233)
                      ++|.++|++||+++|+||+|+++.++|.. ..+...+....+   .|+||.+     |+||+++++  ++++.+.  +. 
T Consensus       255 ~~l~~l~~~~g~lli~DEv~~g~g~~g~~-~~~~~~~~~~di---~t~sK~l-----~iG~~~~~~--~~~~~l~~~~~-  322 (449)
T 2cjg_A          255 AAMRELCDEFDALLIFDEVQTGCGLTGTA-WAYQQLDVAPDI---VAFGKKT-----QVCGVMAGR--RVDEVADNVFA-  322 (449)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTTTSSS-STHHHHTCCCSE---EEECGGG-----SSEEEEECG--GGGGSTTCTTT-
T ss_pred             HHHHHHHHHCCcEEEEeccccCCCccCcc-eeecccCCCceE---EEecCcc-----cEEEEEECH--HHhhhhhhccc-
Confidence            36899999999999999999998776642 122222222233   3789986     799999987  4543210  01 


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCC-cccccCCCccEEE
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPC-ITCPKKPEGSMFV  153 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~-~~~~~~~~~g~~~  153 (233)
                             .......+++.++..+.++.+.+ +. ..+  ....+.++++++++.+.|++    ++. +.. ..+.|. |+
T Consensus       323 -------~~~~~~~t~~~n~~~~~aa~aal-~~-~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~~~~g~-~~  389 (449)
T 2cjg_A          323 -------VPSRLNSTWGGNLTDMVRARRIL-EV-IEA--EGLFERAVQHGKYLRARLDELAADFPAVVLD-PRGRGL-MC  389 (449)
T ss_dssp             -------STTSSCCSSSSCHHHHHHHHHHH-HH-HHH--HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEE-EEEETT-EE
T ss_pred             -------CCcccccCCCCCHHHHHHHHHHH-HH-HHh--ccHHHHHHHHHHHHHHHHHHHHhhCCCceee-EeeccE-EE
Confidence                   11111122333333332444443 21 111  23556677777777777765    343 322 345444 55


Q ss_pred             EEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          154 MYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                      +         +.++...     +..++..+++ ++||.+.|+.    .+++|+++.  .+++++++++++|.+++++.
T Consensus       390 ~---------~~~~~~~-----~~~~~~~~l~-~~Gv~v~~~g----~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  448 (449)
T 2cjg_A          390 A---------FSLPTTA-----DRDELIRQLW-QRAVIVLPAG----ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV  448 (449)
T ss_dssp             E---------EECSSHH-----HHHHHHHHHH-HTTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             E---------EEECChH-----HHHHHHHHHH-HCCeEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            6         3332110     1344555555 6899999963    489999654  58999999999999998753

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.60  E-value=2.2e-14  Score=127.94  Aligned_cols=200  Identities=15%  Similarity=0.102  Sum_probs=125.6

Q ss_pred             ChHHHHHHHcCcEEEEccccC-ccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYG-HLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|+++|++||+|++|. ++.+.+....++.   .  ..+++.|++|.+  +|+|.||+++++.  +.. +. . .
T Consensus       211 ~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~---~--~div~~s~~K~l--~GprgG~i~~~~~--~~~-~~-~-~  278 (483)
T 1rv3_A          211 GRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE---H--CHVVTTTTHKTL--RGCRAGMIFYRRG--VRS-VD-P-K  278 (483)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG---T--CSEEEEESSGGG--CCCSCEEEEEECS--BCC-------
T ss_pred             HHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC---C--CcEEEecCcccC--CCCCceEEEEcch--hhh-hc-c-c
Confidence            378999999999999999987 4444443333332   1  227889999975  5888999999873  220 00 0 0


Q ss_pred             hhh----hhHHhhhhhhh--hccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC-CccE
Q 047983           80 HSI----SLNMRMDDYLL--LSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKP-EGSM  151 (233)
Q Consensus        80 ~~~----~~~~~~~~~~~--~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~g~  151 (233)
                      +..    .....+.....  ...+++... .+++..++......+++.++.+.++++.+.+.|+++ ++.. ..+ .+.+
T Consensus       279 ~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~  356 (483)
T 1rv3_A          279 TGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKI-VTGGSDNH  356 (483)
T ss_dssp             ---CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEE-GGGSCSSS
T ss_pred             cCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-CCEe-ccCCCCCc
Confidence            000    00022222111  111222222 444433322223456888999999999999999887 5554 333 2456


Q ss_pred             EEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEE----CCcccC-CCCcEEEEeec--C----HHHHHHHHH
Q 047983          152 FVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVL----PGITVG-LKDWLRITFAV--E----PSAFEIGLG  220 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~-~~~~~Rl~~~~--~----~~~l~~~~~  220 (233)
                      ++|         +.+...   ++  +.+.+.+.|.+.||.+.    ||.... ..+++|+++..  +    +++++++++
T Consensus       357 ~~~---------v~~~~~---g~--~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~  422 (483)
T 1rv3_A          357 LIL---------VDLRSK---GT--DGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAH  422 (483)
T ss_dssp             EEE---------EEGGGG---TC--CHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHH
T ss_pred             eEE---------EeccCC---CC--CHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHH
Confidence            778         444321   22  44556777888999999    987322 25799999985  5    799999999


Q ss_pred             HHHHHHHH
Q 047983          221 RMKAFYYR  228 (233)
Q Consensus       221 ~l~~~l~~  228 (233)
                      .|.++++.
T Consensus       423 ~l~~~l~~  430 (483)
T 1rv3_A          423 FIHRGIEL  430 (483)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998876

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.60  E-value=2.5e-14  Score=122.46  Aligned_cols=199  Identities=13%  Similarity=0.079  Sum_probs=116.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccC-CCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWI-VPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++|+|++|+.+...    ..+   ...+..+++.|+||.++ .+|  +|++++++  .+++.+.-.+.
T Consensus       164 ~~i~~l~~~~~~~li~D~~~~~~~~~----~~~---~~~~~d~~~~s~~K~l~~~~G--~g~~~~~~--~~~~~~~~~~~  232 (376)
T 3f0h_A          164 MMIGEFCKKNNMFFVCDCVSAFLADP----FNM---NECGADVMITGSQKVLACPPG--ISVIVLAP--RGVERVEKSKV  232 (376)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTSC----CCH---HHHTCSEEEEETTTTTCCCSS--CEEEEECH--HHHHHHHTCCC
T ss_pred             HHHHHHHHHcCCEEEEEcCccccCcc----ccc---cccCccEEEecCcccccCCCc--eEEEEECH--HHHHHhhcCCC
Confidence            37899999999999999999874322    112   12223488999999987 667  57788876  44432110000


Q ss_pred             hh--hhhHHhhhhhh-hhccCcchH-H-HHHHHHhhhcHHH-HHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC--ccE
Q 047983           80 HS--ISLNMRMDDYL-LLSESVYTT-V-GAVPQILEKTEEE-FFSKITDILREAADICCDRLKEIPCITCPKKPE--GSM  151 (233)
Q Consensus        80 ~~--~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~  151 (233)
                      .+  .+......... ..+...++. . .++...+..-.+. .+++.++.++++++++.+.|++++ +.. ..+.  ..+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~-~~~~~~~~~  310 (376)
T 3f0h_A          233 RTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLP-FEL-VSESPANGV  310 (376)
T ss_dssp             CCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSS-EEE-CCSSBBTTE
T ss_pred             CceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC-Ccc-CccccCceE
Confidence            00  00000000000 001112222 1 2222222111122 478888999999999999998873 332 2222  233


Q ss_pred             EEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHH
Q 047983          152 FVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~  228 (233)
                      +.+           .+.    +. +..++...++++.||.+.||......+++|+++..  +++++++++++|.+++++
T Consensus       311 ~~~-----------~~~----~~-~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~  373 (376)
T 3f0h_A          311 TSV-----------HPT----TA-NAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR  373 (376)
T ss_dssp             EEE-----------EES----SS-CHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred             EEE-----------eCC----CC-CHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            333           221    11 34555555555559999998554457899999973  899999999999998864

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.60  E-value=2.4e-15  Score=132.64  Aligned_cols=193  Identities=11%  Similarity=0.011  Sum_probs=106.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||++||+||+|+++ ..+.. ..+...+....   +.|+||.++. |+|+||+++++  ++++.+.-.   
T Consensus       225 ~~l~~l~~~~g~~lI~DEv~~g~-~~g~~-~~~~~~~~~~d---i~s~sK~l~~-G~~~G~v~~~~--~~~~~l~~~---  293 (453)
T 2cy8_A          225 REGAELARQYGALFILDEVISGF-RVGNH-GMQALLDVQPD---LTCLAKASAG-GLPGGILGGRE--DVMGVLSRG---  293 (453)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTT-TTCTT-HHHHHHTCCCS---EEEEEGGGGT-TSSCEEEEECH--HHHTTSSSC---
T ss_pred             HHHHHHHHHcCCEEEEecCcccc-ccCch-hhhHHhCCCCc---EEEEChhhhC-CcceEEEechH--HHHHHhccc---
Confidence            36899999999999999999988 54421 11211221122   3499999885 99999999987  455321100   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHHhhcC----CCcccccCCCccEEEEE
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEK-TEEEFFSKITDILREAADICCDRLKEI----PCITCPKKPEGSMFVMY  155 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~g~~~~~  155 (233)
                         .........+++.++..+.++.+.+ +. .    .+...+.++++++++.+.|+++    +... ..++ .|.++| 
T Consensus       294 ---~~~~~~~~~t~~~n~~~~aa~~aal-~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~-~g~~~~-  362 (453)
T 2cy8_A          294 ---SDRKVLHQGTFTGNPITAAAAIAAI-DTIL----EDDVCAKINDLGQFAREAMNHLFARKGLNW-LAYG-RFSGFH-  362 (453)
T ss_dssp             ---C---------CCCCHHHHHHHHHHH-HHHH----HTTHHHHHHHHHHHHHHHHHHHHHHTTCCE-EEEC-CTTEEE-
T ss_pred             ---cCCCceeCCCCCCCHHHHHHHHHHH-HHHh----hhhHHHHHHHHHHHHHHHHHHHHhhCCCcE-EEEE-eeeEEE-
Confidence               0000111122333333332333333 21 1    1234455566666666666542    3222 1334 455777 


Q ss_pred             ecCCCcccccccc-----c----ccCC---C--CChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHH
Q 047983          156 CGSEDKCLLKLNY-----S----LLEG---I--NSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGR  221 (233)
Q Consensus       156 ~~~~~~~~~~~~~-----~----~~~~---~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~  221 (233)
                              +.++.     .    ....   .  .+..++... |.++||.+.|+      +.+|+++..+++++++++++
T Consensus       363 --------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~Gv~v~~~------~~~~l~~~~t~~~i~~~l~~  427 (453)
T 2cy8_A          363 --------LMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMA-LILEGVDIGGR------GSVFLSAQHEREHVEHLVTT  427 (453)
T ss_dssp             --------EEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHH-HHHTTEECBTT------TEEECCTTCCHHHHHHHHHH
T ss_pred             --------EEEeccccccccccccccccccccHHHHHHHHHH-HHHCCeEEeCC------CCEEeeccCCHHHHHHHHHH
Confidence                    44431     0    0000   0  012344444 45679999664      24778766799999999999


Q ss_pred             HHHHHHHHh
Q 047983          222 MKAFYYRHA  230 (233)
Q Consensus       222 l~~~l~~~~  230 (233)
                      |.+++++..
T Consensus       428 l~~~l~~~~  436 (453)
T 2cy8_A          428 FDRVLDRLA  436 (453)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.59  E-value=1.5e-15  Score=132.81  Aligned_cols=187  Identities=15%  Similarity=0.044  Sum_probs=106.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++ ++||++||+||+|++| ..+.. ..+...+....   +.|+||.++. |+|+||+++++  ++++.+  .    
T Consensus       224 ~l~~l-~~~g~~lI~DEv~~g~-~~g~~-~~~~~~~~~~d---i~s~sK~l~~-G~~~G~~~~~~--~~~~~~--~----  288 (424)
T 2e7u_A          224 ALHEA-KAYGVLLIADEVMTGF-RLAFG-GATELLGLKPD---LVTLGKILGG-GLPAAAYAGRR--EIMEKV--A----  288 (424)
T ss_dssp             HHHHG-GGGTCEEEEECTTTTT-TSSTT-HHHHHHTCCCS---EEEECGGGGT-TSSCEEEEECH--HHHTTB--T----
T ss_pred             HHHHH-HHcCCEEEEecCcccc-ccchh-HHHHHhCCCcc---hhhhhhhhhC-CcceEEEEEcH--HHHhhh--c----
Confidence            68899 9999999999999988 44421 11111222222   3399999885 99999999987  454321  1    


Q ss_pred             hhhHHhhh--hhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcC----CCcccccCCCccEEEEE
Q 047983           82 ISLNMRMD--DYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEI----PCITCPKKPEGSMFVMY  155 (233)
Q Consensus        82 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~g~~~~~  155 (233)
                          ....  ...+++.++..++++.+.+ +. .++ ..+..+.++++++++.+.|+++    +... ..++ .|.++| 
T Consensus       289 ----~~~~~~~~~t~~~~~~~~aaa~aal-~~-~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~-~g~~~~-  358 (424)
T 2e7u_A          289 ----PLGPVYQAGTLSGNPLAMAAGLATL-EL-LEE-NPGYYAYLEDLGARLEAGLKEVLKEKGLPH-TVNR-VGSMIT-  358 (424)
T ss_dssp             ----TTSSBCCCCTTCSCHHHHHHHHHHH-HH-HHH-CTHHHHHHHHHHHHHHHHHHHHHHHTTCCC-EEEE-ETTEEE-
T ss_pred             ----ccCCcccCCCCCCCHHHHHHHHHHH-HH-HHh-ccHHHHHHHHHHHHHHHHHHHHHHhCCCce-EEEe-eceEEE-
Confidence                1000  1112233333332333333 21 111 1445666677777777777553    3221 1234 355777 


Q ss_pred             ecCCCcccccccccccC-------CCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 047983          156 CGSEDKCLLKLNYSLLE-------GINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAF  225 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~  225 (233)
                              +.++.....       ........+.+.|.++||.+.||..    .++|+++..+++++++++++|.++
T Consensus       359 --------i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----~~~~~~~~~t~~~i~~~l~~l~~~  423 (424)
T 2e7u_A          359 --------VFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNF----EAAFLSVAHREEDVEKTLEALRKA  423 (424)
T ss_dssp             --------EESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSS----SCEECCTTCCHHHHHHHHHHHHHH
T ss_pred             --------EEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCC----CceEeeccCCHHHHHHHHHHHHHh
Confidence                    433210000       0000123344445578999999752    457888777999999999999875

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.58  E-value=2e-14  Score=123.32  Aligned_cols=197  Identities=15%  Similarity=0.128  Sum_probs=118.1

Q ss_pred             ChHHHHHHHc--CcEEEEccccCccccCCCccccccccCCccCEEEEccCcccc-CCCCceEEEEEecCCCcccc-ccch
Q 047983            1 FCIEETTKKL--GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQ-DLGV   76 (233)
Q Consensus         1 ~~i~~l~~~~--~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~R~G~~~~~~~~~~~~-~~~~   76 (233)
                      ++|+++|++|  |++||+||+|+...    .+.++   ...+..+++.|+||.+ +.+|+  ||+++++  .+++ .+.-
T Consensus       157 ~~i~~~~~~~~~~~~li~D~a~~~~~----~~~~~---~~~~~d~~~~s~~K~~~~~~G~--G~~~~~~--~~~~~~l~~  225 (385)
T 2bkw_A          157 KAISQAIKQTSPETFFVVDAVCSIGC----EEFEF---DEWGVDFALTASQKAIGAPAGL--SISLCSS--RFMDYALND  225 (385)
T ss_dssp             HHHHHHHHHHCTTSEEEEECTTTTTT----SCCCT---TTTTCSEEEEESSSTTCCCSCE--EEEEECH--HHHHHHTCH
T ss_pred             HHHHHHHHhhCCCCEEEEECccccCC----ccccc---cccCceEEEecCccccccCCcc--eEEEEcH--HHHHHHHhh
Confidence            3789999999  99999999998421    11122   2224458899999954 45775  9999987  3432 1100


Q ss_pred             h---h--hhhh---hhHHhhhhhhh---h-ccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHh-hcCCCcc
Q 047983           77 A---F--FHSI---SLNMRMDDYLL---L-SESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRL-KEIPCIT  142 (233)
Q Consensus        77 ~---~--~~~~---~~~~~~~~~~~---~-~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~  142 (233)
                      .   .  ....   ........+..   . ..+.+... .++...++......+++.++.++++++++.+.| +++ ++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~  304 (385)
T 2bkw_A          226 SKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-QLT  304 (385)
T ss_dssp             HHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCE
T ss_pred             ccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-Cce
Confidence            0   0  0000   00000001110   0 01222222 333333321112226778899999999999999 887 555


Q ss_pred             cccCC-----CccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-CCcEEEE-ee-----c
Q 047983          143 CPKKP-----EGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-KDWLRIT-FA-----V  210 (233)
Q Consensus       143 ~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~Rl~-~~-----~  210 (233)
                      . ..|     ..+.++|         ++++        +..++. +.|.++||.+.||..+.. .+++|++ ++     .
T Consensus       305 ~-~~~~~~~~~~~~~~~---------~~~~--------~~~~~~-~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~  365 (385)
T 2bkw_A          305 S-VSRYPSNMSAHGLTA---------VYVA--------DPPDVI-AFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNK  365 (385)
T ss_dssp             E-SSCSSSTTBCSSCEE---------EECS--------CHHHHH-HHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSST
T ss_pred             e-cccCcccccCCceEE---------EecC--------CHHHHH-HHHHHCCeEEeCCCCcccCCCEEEEEccccccccC
Confidence            3 332     2467778         4443        133444 445678999999887643 5799999 76     3


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q 047983          211 EPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       211 ~~~~l~~~~~~l~~~l~~  228 (233)
                      +++++++++++|.+++++
T Consensus       366 ~~e~i~~~~~~l~~~~~~  383 (385)
T 2bkw_A          366 NLPYMKNCFDLIKLALQR  383 (385)
T ss_dssp             TCTHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            788999999999988754

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.58  E-value=2.4e-14  Score=124.12  Aligned_cols=191  Identities=12%  Similarity=0.036  Sum_probs=113.6

Q ss_pred             cCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh------hhhh
Q 047983           10 LGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF------HSIS   83 (233)
Q Consensus        10 ~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~------~~~~   83 (233)
                      +|+++|+||+|..+...    ..+.     +..+++.|+||.++.+| ++||+++++  ++++.+.-.+.      .-.+
T Consensus       191 ~~~~vivD~a~~~~~~~----~~~~-----~~di~~~s~sK~~~~~g-g~g~l~~~~--~~~~~l~~~~~~~~~~~~~~~  258 (398)
T 2fyf_A          191 DDALVVIDATSGAGGLP----VDIA-----ETDAYYFAPQKNFASDG-GLWLAIMSP--AALSRIEAIAATGRWVPDFLS  258 (398)
T ss_dssp             C-CEEEEECTTTTTTSC----CCGG-----GCSEEEECTTSTTCSCS-SEEEEEECH--HHHHHHHHHHHTTCCCCGGGC
T ss_pred             cCCeEEEEeccccCCcc----cCcc-----cCcEEEEecCcccCCCC-ceEEEEECH--HHHHHhhcccccCCCCCcEEe
Confidence            89999999999875421    1221     13378999999998886 599999987  44432100000      0000


Q ss_pred             hHHhhhhh-hhhc-cCcchHH-HHHHHHhhhcHHHH--HHHHHHHHHHHHHHHHHHhhcCCCccccc-CC--CccEEEEE
Q 047983           84 LNMRMDDY-LLLS-ESVYTTV-GAVPQILEKTEEEF--FSKITDILREAADICCDRLKEIPCITCPK-KP--EGSMFVMY  155 (233)
Q Consensus        84 ~~~~~~~~-~~~~-~~~~~~~-~~~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~--~~g~~~~~  155 (233)
                      ........ .... .+++... .++...++ ...++  +++.++.++++++++.+.|++++++..+. .|  .+++++| 
T Consensus       259 ~~~~~~~~~~~~~~~t~~~~~~~a~~~al~-~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~-  336 (398)
T 2fyf_A          259 LPIAVENSLKNQTYNTPAIATLALLAEQID-WLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGT-  336 (398)
T ss_dssp             HHHHHHHHTTTCCSSCCCHHHHHHHHHHHH-HHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEE-
T ss_pred             hHHHhhhcccCCCCCCCCHHHHHHHHHHHH-HHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEE-
Confidence            00000000 0111 1122222 33333332 12223  78889999999999999998886665422 24  3555888 


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHH
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~  228 (233)
                              ++++.    ++ +..++..+ |.++||.+.||......+++|++++.  +++++++++++|++++++
T Consensus       337 --------~~~~~----~~-~~~~l~~~-L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~  397 (398)
T 2fyf_A          337 --------IDFVD----DV-DAGTVAKI-LRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVER  397 (398)
T ss_dssp             --------EEECT----TS-CHHHHHHH-HHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             --------EECCC----CC-CHHHHHHH-HHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence                    55532    22 24444444 55669999987332235799999994  899999999999988754

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.58  E-value=2.2e-14  Score=124.19  Aligned_cols=189  Identities=9%  Similarity=0.103  Sum_probs=115.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEE-EEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLG-WLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G-~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|+++|++||+||+|..    +..+..+..   .+..+++.|+||.++ |+  +| |+++++  .+++.+.-.  
T Consensus       185 ~~i~~l~~~~~~~li~D~a~~~----g~~~~~~~~---~~~d~~~~s~~K~~g-~~--~G~~~~~~~--~~~~~l~~~--  250 (406)
T 3cai_A          185 RAMTKLVHDVGALVVVDHSAAA----PYRLLDIRE---TDADVVTVNAHAWGG-PP--IGAMVFRDP--SVMNSFGSV--  250 (406)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTT----TTCCCCHHH---HCCSEEEEEGGGGTS-CS--CEEEEESCH--HHHHTSCCC--
T ss_pred             HHHHHHHHHcCCEEEEEccccc----CCCCCCchh---cCCCEEEeehhhhcC-CC--cCeEEEEeh--HHHhhcCCc--
Confidence            3789999999999999999984    211112222   234588999999764 44  99 999987  444321100  


Q ss_pred             hhhhhHHhhhhhhhhccC-cchHH-HHHHHHhhhc--------------HHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 047983           80 HSISLNMRMDDYLLLSES-VYTTV-GAVPQILEKT--------------EEEFFSKITDILREAADICCDRLKEIPCITC  143 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~l~~~--------------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  143 (233)
                      ..... ..  ....+..+ ++... .++...++..              ..+++++.++.++++++++.+.|++++++..
T Consensus       251 ~~~~~-~~--~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  327 (406)
T 3cai_A          251 STNPY-AT--GPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVML  327 (406)
T ss_dssp             CSCTT-CC--GGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred             ccCCC-CC--ccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            00000 00  00011111 22221 2222222111              1126788999999999999999998877654


Q ss_pred             ccCCC---ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCc------ccCC---CCcEEEEeec-
Q 047983          144 PKKPE---GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGI------TVGL---KDWLRITFAV-  210 (233)
Q Consensus       144 ~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~------~f~~---~~~~Rl~~~~-  210 (233)
                       ..|.   ++ +++         +.++     +.  +.+.+.+.|.++||.+.+|+      .|+.   .+++|+++.. 
T Consensus       328 -~~~~~~~~~-~~~---------~~~~-----~~--~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~  389 (406)
T 3cai_A          328 -IGRPEAQIP-VVS---------FAVH-----KV--PADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHY  389 (406)
T ss_dssp             -CCCCSSBCS-EEE---------EEET-----TB--CHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCEEEECCTT
T ss_pred             -cCCccccCC-EEE---------EEEC-----Cc--CHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeEEEEeecC
Confidence             3443   45 566         4443     11  33344455567899999987      4543   4799999996 


Q ss_pred             -CHHHHHHHHHHHHH
Q 047983          211 -EPSAFEIGLGRMKA  224 (233)
Q Consensus       211 -~~~~l~~~~~~l~~  224 (233)
                       +++++++++++|++
T Consensus       390 ~t~e~i~~~~~~l~~  404 (406)
T 3cai_A          390 STMAEVDQLVRALAS  404 (406)
T ss_dssp             CCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHH
Confidence             78899999888864

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.56  E-value=6.5e-14  Score=119.61  Aligned_cols=189  Identities=13%  Similarity=0.052  Sum_probs=114.6

Q ss_pred             cCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhhhhhHHhhh
Q 047983           10 LGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMD   89 (233)
Q Consensus        10 ~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (233)
                      +|+++|+|++|+.+..    +..+.   ..  .+++.|+||.++.+|  +||+++++  ++++.+.-. ...........
T Consensus       166 ~~~~vivD~a~~~~~~----~~~~~---~~--d~~~~s~~K~~g~~G--~G~l~~~~--~~~~~l~~~-~~~~~~~~~~~  231 (362)
T 2c0r_A          166 GSVPLIGDMSSDILSR----PFDLN---QF--GLVYAGAQKNLGPSG--VTVVIVRE--DLVAESPKH-LPTMLRYDTYV  231 (362)
T ss_dssp             TTSCEEEECTTTTTSS----CCCGG---GC--SEEEEETTTTTCCSS--CEEEEEEG--GGSSSCCTT-SCGGGCHHHHH
T ss_pred             CCCEEEEEChhhccCC----ccchh---HC--cEEEEeccccccCcC--cEEEEEcH--HHHhhcccc-CchHHhHHHHh
Confidence            7999999999987431    12222   22  277789999999889  99999987  455322100 00000000000


Q ss_pred             hhhhhccCcchHH-HHHHHHhhhcHHH-HHHHHHHHHHHHHHHHHHHhhcCCCc-ccccCC--CccEEEEEecCCCcccc
Q 047983           90 DYLLLSESVYTTV-GAVPQILEKTEEE-FFSKITDILREAADICCDRLKEIPCI-TCPKKP--EGSMFVMYCGSEDKCLL  164 (233)
Q Consensus        90 ~~~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~--~~g~~~~~~~~~~~~~~  164 (233)
                      .......+++... .++...++...+. .++++++.++++++++.+.|++++++ .....+  .++.++|         +
T Consensus       232 ~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~---------~  302 (362)
T 2c0r_A          232 KNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNIT---------F  302 (362)
T ss_dssp             HTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEE---------E
T ss_pred             hccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEE---------E
Confidence            0001111222222 3333333222222 57889999999999999999988534 321111  2345567         4


Q ss_pred             cccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          165 KLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                      .++...      +...+.+.|.++||.+.||..|  .+++|+|++.  ++++++.+++.|+++++++
T Consensus       303 ~~~~~~------~~~~~~~~L~~~gi~~~~g~~~--~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~  361 (362)
T 2c0r_A          303 RLASEE------LEKEFVKASEQEGFVGLKGHRS--VGGLRASIYNAVPYESCEALVQFMEHFKRSR  361 (362)
T ss_dssp             ECSCHH------HHHHHHHHHHHTTEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             EcCCcc------hHHHHHHHHHHCCCeeccCCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            443111      3344455577889999998776  3689999985  7899999999999988765

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.56  E-value=1.5e-14  Score=124.92  Aligned_cols=192  Identities=11%  Similarity=-0.017  Sum_probs=100.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEE-ecCCCcccc-ccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV-TSDPNGILQ-DLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~-~~~~~~~~~-~~~~~~   78 (233)
                      ++|+++|++||++||+||+|+...    ....+...    ..+++.|+||.++.+|  +|+++ +++. .+.+ ...+..
T Consensus       179 ~~i~~la~~~~~~li~D~a~~~~~----~~~~~~~~----~d~~~~s~~K~~g~~g--~g~~~~~~~~-~~~~~~~~~~~  247 (400)
T 3vax_A          179 AELAQQLRATPTYLHVDAAQGYGK----VPGDLTTP----IDMISISGHKIGAPKG--VGALVTRRRE-EMDDERVPLEP  247 (400)
T ss_dssp             HHHHHHHTTSSCEEEEECTTTTTT----SGGGGGSC----CSEEEEETGGGTSCSS--CEEEEECBCS-SSTTCBCCCCC
T ss_pred             HHHHHHHHhcCCEEEEEhhhhcCC----CCcChhhc----CcEEEEeHHHhCCCCc--eEEEEEecch-hccccccccCc
Confidence            378999999999999999998522    11122212    3488999999877665  56766 6652 1110 001110


Q ss_pred             hhhhhhHHhhhhhhhhcc-CcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCc---cEEE
Q 047983           79 FHSISLNMRMDDYLLLSE-SVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEG---SMFV  153 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---g~~~  153 (233)
                      ..     ........... ..+... .++...++ ...+++++.++.++++++++.+.|+ .+++.. ..+.+   +.++
T Consensus       248 ~~-----~~~~~~~~~~~~~~~~~~~~a~~~al~-~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~-~~~~~~~~~~~~  319 (400)
T 3vax_A          248 IM-----FGGGQERKLRPGTLPVPLIMGLAEAAK-IFEAEHAQWQVAAQDLRSRLLAGLA-STSFQV-NGDQDHVVPHIL  319 (400)
T ss_dssp             SS-----CSSCTGGGTSCSCCCHHHHHHHHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHT-TTTCEE-CSCTTSBCTTEE
T ss_pred             ee-----cCCCceeeeecCCCCHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhhC-CCCEEE-eCCcccCCCCEE
Confidence            00     00000001111 122222 33333322 2234678899999999999999998 767664 34443   3344


Q ss_pred             EEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-------------------CCcEEEEe-ec--C
Q 047983          154 MYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-------------------KDWLRITF-AV--E  211 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------~~~~Rl~~-~~--~  211 (233)
                      +         +.++     +.  +.+.+.+.|. +||.+.+|+.|+.                   .+++|+++ +.  +
T Consensus       320 ~---------~~~~-----~~--~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t  382 (400)
T 3vax_A          320 N---------LSFE-----DV--DAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQAT  382 (400)
T ss_dssp             E---------EECT-----TC--CHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC---
T ss_pred             E---------EEeC-----CC--CHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCC
Confidence            4         3333     11  3444555566 8999999976643                   48999999 63  7


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 047983          212 PSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       212 ~~~l~~~~~~l~~~l~~  228 (233)
                      ++++++++++|++++++
T Consensus       383 ~e~i~~~~~~l~~~~~~  399 (400)
T 3vax_A          383 DLDVEELARGVAKLKPS  399 (400)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            88899999999988754

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.56  E-value=3.2e-14  Score=126.46  Aligned_cols=199  Identities=17%  Similarity=0.077  Sum_probs=122.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCC-C---ceEEEEEecCCCccccccch
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVP-G---WRLGWLVTSDPNGILQDLGV   76 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G---~R~G~~~~~~~~~~~~~~~~   76 (233)
                      ++|+++|++||+++|+||+|....++.   .+...+   +..+++.|++|.|+.| |   .|+||+++++  .+++.+.-
T Consensus       223 ~~i~~l~~~~g~~li~Dea~~~~~~g~---~~~~~~---g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~--~l~~~l~~  294 (474)
T 1wyu_B          223 LEISRLCKEAGVQLYYDGANLNAIMGW---ARPGDM---GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKA--HLAPYLPV  294 (474)
T ss_dssp             HHHHHHHHHHTCEEEEEGGGGGGTTTT---CCHHHH---TCSEEECCTTTTTCCCCTTSCCCCCCEEECG--GGGGGCCS
T ss_pred             HHHHHHHHHcCCEEEEeCchhhhhccC---CCcccC---CCcEEEEeCccccccCCCCCCCCeEEEEEcH--HHHHhCCC
Confidence            378999999999999999998766431   122222   3458888999998877 5   5999999988  45432210


Q ss_pred             hhhhhhhhH------Hhh---hhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC
Q 047983           77 AFFHSISLN------MRM---DDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKP  147 (233)
Q Consensus        77 ~~~~~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  147 (233)
                       ..+.....      .+-   ......+.+...+.++++. +.....+.+++..+.+.++++++.+.|+++ ++.. ..+
T Consensus       295 -~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~-l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~  370 (474)
T 1wyu_B          295 -PLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAY-IRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRV-PYD  370 (474)
T ss_dssp             -CEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBC-SSC
T ss_pred             -CeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEe-cCC
Confidence             00000000      000   0000111111111133333 333345678888999999999999999887 5543 122


Q ss_pred             CccEE--EEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeec--CHHHHHHHHHH
Q 047983          148 EGSMF--VMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAV--EPSAFEIGLGR  221 (233)
Q Consensus       148 ~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~--~~~~l~~~~~~  221 (233)
                       ++.+  +|         +.++.    +. +..++..+++ ++||.+ |+..|+.  .+++|++++.  +.+++++++++
T Consensus       371 -~~~~~~~~---------~~~~~----~~-~~~~l~~~L~-~~Gi~~-~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~  433 (474)
T 1wyu_B          371 -GPSMHEFV---------AQPPE----GF-RALDLAKGLL-ELGFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEA  433 (474)
T ss_dssp             -SSCCSCEE---------EBCST----TC-CHHHHHHHHH-HTTCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHH
T ss_pred             -CCcceEEE---------EEcCC----CC-CHHHHHHHHH-HCCccc-cccccccccCCEEEEEeecCCCHHHHHHHHHH
Confidence             2233  55         33311    12 3455555555 569984 7777752  6899999997  78999999999


Q ss_pred             HHHHHHH
Q 047983          222 MKAFYYR  228 (233)
Q Consensus       222 l~~~l~~  228 (233)
                      |++++++
T Consensus       434 L~~~~~~  440 (474)
T 1wyu_B          434 MGALLKK  440 (474)
T ss_dssp             HHHHHTS
T ss_pred             HHHHHHh
Confidence            9988753

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.55  E-value=2.5e-14  Score=124.14  Aligned_cols=191  Identities=14%  Similarity=0.099  Sum_probs=116.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccc-cCCCccccccccCCccCEEEEccC--ccccCCCCceEEEEEecCCCccccccchh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLV-FGNTHFVPMGVFGSIVPVLTLGSI--SKRWIVPGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~--sK~~~~~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++|+++|+++|+++|+||+|+.+. +++..   +..+    ..+++.|+  ||.++.+| |.||++++++ ++++.   +
T Consensus       168 ~~i~~l~~~~~~~li~Dea~~~g~~~~~~~---~~~~----~di~~~S~~~sK~~~~~G-~~g~~~~~~~-~~~~~---l  235 (399)
T 2oga_A          168 DALRELADRHGLHIVEDAAQAHGARYRGRR---IGAG----SSVAAFSFYPGKNLGCFG-DGGAVVTGDP-ELAER---L  235 (399)
T ss_dssp             HHHHHHHHHHTCEECEECTTCTTCEETTEE---TTCT----TCEEEEECCTTSSSCCSS-CCEEEEESCH-HHHHH---H
T ss_pred             HHHHHHHHHcCCEEEEECcccccCccCCee---cccc----cCEEEEeCCCCccCCcCC-ceEEEEeCCH-HHHHH---H
Confidence            378999999999999999999763 33321   1111    13788888  89998889 9999998742 33321   1


Q ss_pred             hhhhhhhHHhhhhhh----------hhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC
Q 047983           78 FFHSISLNMRMDDYL----------LLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKK  146 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~----------~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  146 (233)
                              .......          ..+...+... .+....+     ++++...+..+++++++.+.|++++++..+..
T Consensus       236 --------~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l-----~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~  302 (399)
T 2oga_A          236 --------RMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRL-----AHLDSWNGRRSALAAEYLSGLAGLPGIGLPVT  302 (399)
T ss_dssp             --------HHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHH-----HTHHHHHHHHHHHHHHHHHHTTTCTTCBCCCC
T ss_pred             --------HHHHhcCccccccccccccCCCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCCCccccCC
Confidence                    1111110          0111122222 2111111     22334455666778888888988766654344


Q ss_pred             CCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC-----------C------------CCc
Q 047983          147 PEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG-----------L------------KDW  203 (233)
Q Consensus       147 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-----------~------------~~~  203 (233)
                      |+++.++|         +.++...     .+.+.+.+.|.++||.+.++....           .            .++
T Consensus       303 ~~~~~~~~---------~~~~~~~-----~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  368 (399)
T 2oga_A          303 APDTDPVW---------HLFTVRT-----ERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQV  368 (399)
T ss_dssp             CTTEECCC---------SSEEEEC-----SSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHE
T ss_pred             CCCCccee---------EEEEEEC-----CCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCE
Confidence            66677776         4343321     134445555667899998853210           0            257


Q ss_pred             EEEEeec--CHHHHHHHHHHHHHHHHHHh
Q 047983          204 LRITFAV--EPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       204 ~Rl~~~~--~~~~l~~~~~~l~~~l~~~~  230 (233)
                      +|+++..  ++++++.+++.|++++++..
T Consensus       369 lRi~~~~~~t~edi~~~~~~l~~~~~~l~  397 (399)
T 2oga_A          369 LSLPIGPHLERPQALRVIDAVREWAERVD  397 (399)
T ss_dssp             EEECCSTTCCHHHHHHHHHHHHHHHHSCC
T ss_pred             EEccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            9999874  89999999999999887543

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.55  E-value=1.5e-13  Score=118.66  Aligned_cols=181  Identities=15%  Similarity=0.152  Sum_probs=112.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceE-EEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~-G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|+||+|..+.+..    ++    ..++.+++.|+||.++.+|.|+ ||++++++ +++        
T Consensus       157 ~~i~~l~~~~~~~li~De~~~~~~~~~----~~----~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~-~l~--------  219 (386)
T 1cs1_A          157 AKICHLAREVGAVSVVDNTFLSPALQN----PL----ALGADLVLHSCTKYLNGHSDVVAGVVIAKDP-DVV--------  219 (386)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTCTTTCC----GG----GGTCSEEEEETTTTTTCSSCCCCEEEEESSH-HHH--------
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCC----cc----ccCceEEEEcCcccccCCCCceeEEEEeCcH-HHH--------
Confidence            378999999999999999999876532    12    1345689999999999999997 99999762 233        


Q ss_pred             hhhhhHHhhhhhhh-hccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc------------
Q 047983           80 HSISLNMRMDDYLL-LSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPK------------  145 (233)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~------------  145 (233)
                            ..+..... .+...++.. .+....+     +++....+.+.++++.+.+.|++++.+....            
T Consensus       220 ------~~l~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~  288 (386)
T 1cs1_A          220 ------TELAWWANNIGVTGGAFDSYLLLRGL-----RTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEI  288 (386)
T ss_dssp             ------HHHHHHHHHHTCBCCHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHH
T ss_pred             ------HHHHHHHHhcCCCCCHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHH
Confidence                  22222211 222223322 1111111     2345556677888888888887754322110            


Q ss_pred             -----CCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC---------------------
Q 047983          146 -----KPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG---------------------  199 (233)
Q Consensus       146 -----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~---------------------  199 (233)
                           ...++++.+          .++  .      ..+.+.+.|.++||.+.+++ |+                     
T Consensus       289 ~~~~~~~~~~~~~~----------~~~--~------~~~~~~~~l~~~gi~~~~~~-~g~~~sl~~~~~~~~~~~~~~~~  349 (386)
T 1cs1_A          289 AARQQKGFGAMLSF----------ELD--G------DEQTLRRFLGGLSLFTLAES-LGGVESLISHAATMTHAGMAPEA  349 (386)
T ss_dssp             HHHHCSSCCSEEEE----------EES--S------CHHHHHHHHHTCSSSEEBSC-CCSSSCEEEEGGGTTTTTSCHHH
T ss_pred             HHHhcCCCceEEEE----------EEC--C------CHHHHHHHHHhCCcceEccc-CCCcceeeecccccccccCCHHH
Confidence                 112455444          232  1      24556677888999987421 11                     


Q ss_pred             ------CCCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          200 ------LKDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       200 ------~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                            .++++|++++.  ++.++.++++.+++++..
T Consensus       350 ~~~~g~~~~~iRis~~~--~~~~~~i~~l~~al~~~~  384 (386)
T 1cs1_A          350 RAAAGISETLLRISTGI--EDGEDLIADLENGFRAAN  384 (386)
T ss_dssp             HHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHHHHT
T ss_pred             HHhcCCCCCeEEEEEcc--CCHHHHHHHHHHHHHHhh
Confidence                  14799999997  345677777777776654

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.54  E-value=4e-14  Score=124.69  Aligned_cols=196  Identities=18%  Similarity=0.160  Sum_probs=112.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCc----------cccCCCcccccc-ccCCccCEEEEccCccccCCCCceEEEEEecCCCc
Q 047983            1 FCIEETTKKLGIMVIADEVYGH----------LVFGNTHFVPMG-VFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNG   69 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~----------~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~   69 (233)
                      ++|+++|++||++||+||+|+.          +.+.+....++. .+....+++++ |++|. +.+| |.||++++++ +
T Consensus       198 ~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~-S~kk~-~~~~-~gG~~~~~~~-~  273 (456)
T 2ez2_A          198 RAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTM-SGKKD-CLVN-IGGFLCMNDD-E  273 (456)
T ss_dssp             HHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEE-ETTTT-TCCS-SCEEEEESCH-H
T ss_pred             HHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEE-eCccc-CCCC-ceeEEEECCH-H
Confidence            3789999999999999999986          445543211111 11222345555 77886 5577 8999998532 3


Q ss_pred             cccccchhhhhhhhhHHhhhhhh-hh--ccCcchHH-HH-HHHHhhhcHHHHH-HHHHHHHHHHHHHHHHHhhcCCCccc
Q 047983           70 ILQDLGVAFFHSISLNMRMDDYL-LL--SESVYTTV-GA-VPQILEKTEEEFF-SKITDILREAADICCDRLKEIPCITC  143 (233)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~-~~-~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~  143 (233)
                      +++.   +        ..+.... ..  ..+.+... .+ ...++     +.+ +...++..++.+.+.+.|++. ++..
T Consensus       274 ~~~~---~--------~~~~~~~~~~~~~~~~~~~~~~a~a~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  336 (456)
T 2ez2_A          274 MFSS---A--------KELVVVYEGMPSYGGLAGRDMEAMAIGLR-----EAMQYEYIEHRVKQVRYLGDKLKAA-GVPI  336 (456)
T ss_dssp             HHHH---H--------HHHHHHHTCCTTTTTCCHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred             HHHH---H--------HHHHhhccCcccccCcchhHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHhcC-CCcc
Confidence            4321   1        1111110 00  01111111 22 11111     111 233344455566777777765 5543


Q ss_pred             ccCCCccEEEEEecCCCccccccccccc-CCCCChHHH-----HHHHHhccCEEEEC-CcccC------------CCCcE
Q 047983          144 PKKPEGSMFVMYCGSEDKCLLKLNYSLL-EGINSDTEF-----ALKLAKEESIIVLP-GITVG------------LKDWL  204 (233)
Q Consensus       144 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~ll~~~gi~v~p-g~~f~------------~~~~~  204 (233)
                       ..|.+++++|         +.+.  .+ ++. +..++     ..++++++||.++| |..|.            ..+++
T Consensus       337 -~~p~~~~~~~---------~~~~--~~~~~~-~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~i  403 (456)
T 2ez2_A          337 -VEPVGGHAVF---------LDAR--RFCEHL-TQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETV  403 (456)
T ss_dssp             -CSSCCSSEEE---------EEHH--HHTTTS-CGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEE
T ss_pred             -ccCCCceEEE---------EEhH--HhcCCC-ChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeE
Confidence             5688899999         4432  10 011 12233     45555788999877 55441            13789


Q ss_pred             EEEee---cCHHHHHHHHHHHHHHHHHHh
Q 047983          205 RITFA---VEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       205 Rl~~~---~~~~~l~~~~~~l~~~l~~~~  230 (233)
                      |+++.   .+++++++++++|.+++++..
T Consensus       404 Ris~~~~~~t~e~i~~~~~~l~~~l~~~~  432 (456)
T 2ez2_A          404 RLTIPRRVYTYAHMDVVADGIIKLYQHKE  432 (456)
T ss_dssp             EEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            99999   589999999999999987643

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.54  E-value=1.2e-13  Score=119.94  Aligned_cols=195  Identities=10%  Similarity=0.004  Sum_probs=116.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceE-EEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~-G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|+||+|+.    +..+..+..+   +..+++.|++|.+ .+|.++ ||+++++  .+++.+.-. .
T Consensus       185 ~~i~~l~~~~~~~li~D~a~~~----g~~~~~~~~~---~~d~~~~s~~K~l-~~g~~~~g~l~~~~--~~~~~l~~~-~  253 (416)
T 1qz9_A          185 QALTALSHECGALAIWDLAHSA----GAVPVDLHQA---GADYAIGCTYKYL-NGGPGSQAFVWVSP--QLCDLVPQP-L  253 (416)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTT----TTSCCCHHHH---TCSEEEECSSSTT-CCCTTCCCEEEECT--TTTTTSCCS-C
T ss_pred             HHHHHHHHHcCCEEEEEccccc----cCcCCChhhc---CCCEEEecCcccC-CCCCCCeEEEEECH--HHHhccCCC-c
Confidence            3789999999999999999984    2221222222   2348889999984 457777 9999987  444321100 0


Q ss_pred             hhhhhHH-------hhh---hhhhhcc-CcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcC-C--Ccccc
Q 047983           80 HSISLNM-------RMD---DYLLLSE-SVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEI-P--CITCP  144 (233)
Q Consensus        80 ~~~~~~~-------~~~---~~~~~~~-~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~--~~~~~  144 (233)
                      +......       .+.   ....... +++... .++...++....+++++.++.++++++++.+.|+++ +  ++.. 
T Consensus       254 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~-  332 (416)
T 1qz9_A          254 SGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTL-  332 (416)
T ss_dssp             CCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEE-
T ss_pred             cccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEE-
Confidence            0000000       000   0001111 122222 333333322122356788899999999999999874 5  5553 


Q ss_pred             cCCC----ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec---CHHHHHH
Q 047983          145 KKPE----GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV---EPSAFEI  217 (233)
Q Consensus       145 ~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~---~~~~l~~  217 (233)
                      ..|.    .+.++|         ++++        +..+ +.+.|.++||.+.+    ...+++|++++.   +++++++
T Consensus       333 ~~~~~~~~~~~~~~---------~~~~--------~~~~-l~~~l~~~gi~~~~----~~~~~lRis~~~~~~t~~~i~~  390 (416)
T 1qz9_A          333 VTPREHAKRGSHVS---------FEHP--------EGYA-VIQALIDRGVIGDY----REPRIMRFGFTPLYTTFTEVWD  390 (416)
T ss_dssp             CSCSSGGGBCSEEE---------EECT--------THHH-HHHHHHTTTEECEE----ETTTEEEEECCTTTCCHHHHHH
T ss_pred             eCCCCHHHcCCEEE---------EecC--------CHHH-HHHHHHhCCcEecc----CCCCeEEEeCcccCCCHHHHHH
Confidence            3443    245678         4443        1334 44455577998743    246899999973   8999999


Q ss_pred             HHHHHHHHHHHH
Q 047983          218 GLGRMKAFYYRH  229 (233)
Q Consensus       218 ~~~~l~~~l~~~  229 (233)
                      ++++|.+++++.
T Consensus       391 ~~~~l~~~~~~~  402 (416)
T 1qz9_A          391 AVQILGEILDRK  402 (416)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcc
Confidence            999999998764

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.53  E-value=3.5e-13  Score=120.81  Aligned_cols=204  Identities=11%  Similarity=0.016  Sum_probs=123.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccC-----CCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFG-----NTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLG   75 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~-----~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~   75 (233)
                      ++|.++|++||++||+||+|+++.+.     +....++. ....+..+++.|++|. +.+|.++||+++++.  .+....
T Consensus       259 ~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~-~~~~g~d~~~~s~~K~-l~~~~~~g~~~~~~~--~~~~~~  334 (514)
T 3mad_A          259 PEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFD-FRLEGVTSVSADTHKY-GYGAKGTSVILYRRP--DLLHYQ  334 (514)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCS-TTSTTCCEEEECTTTT-TCCCSSCEEEEESSH--HHHTTT
T ss_pred             HHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCccc-ccCCCCcEEEECchhc-cCCCCCeEEEEEeCH--HHhccc
Confidence            47899999999999999999988652     11111222 2222345888999998 567889999999872  221100


Q ss_pred             hhhhhhhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEE
Q 047983           76 VAFFHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVM  154 (233)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~  154 (233)
                      ... ............ ....+.+... .++...+.......+++..+.+.++++++.+.|++++++.. ..+..+ ++|
T Consensus       335 ~~~-~~~~~~~~~~~~-~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~~-~~~  410 (514)
T 3mad_A          335 YFI-AADWPGGLYFSP-TFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKI-LGDPLW-VIA  410 (514)
T ss_dssp             CEE-ESSCTTCSEEES-SSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEE-SSCCSS-EEE
T ss_pred             ccc-ccccCCCcccCC-ccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEE-eCCCeE-EEE
Confidence            000 000000000000 0111112221 22222222224456788899999999999999999877765 344444 555


Q ss_pred             EecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec---CHHHHHHHHHHHHHHHHHHhh
Q 047983          155 YCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV---EPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~---~~~~l~~~~~~l~~~l~~~~~  231 (233)
                               +..  .   +.  +...+.+.|.++||.+ +|..|  .+++|+++..   +++++++++++|.+++++..+
T Consensus       411 ---------~~~--~---~~--~~~~l~~~L~~~Gi~v-~g~~~--~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~  471 (514)
T 3mad_A          411 ---------VAS--D---EL--NIYQVMEEMAGRGWRL-NGLHR--PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA  471 (514)
T ss_dssp             ---------EEC--S---SS--CHHHHHHHHHTTTCBC-EEETT--TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred             ---------EeC--C---CC--CHHHHHHHHHhcCCEe-ccCCC--CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence                     222  1   11  3444555566779988 54444  4789999983   568999999999999987753

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.52  E-value=3.4e-13  Score=117.86  Aligned_cols=194  Identities=12%  Similarity=0.164  Sum_probs=114.9

Q ss_pred             ChHHHHHHHcCcEEEEccccC-ccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYG-HLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|++||+||+|+ ++.+++..   +..+ . +  +++.|+||..+++|.|+||++++++ ++++.  +   
T Consensus       155 ~~i~~la~~~~~~li~Dea~~~g~~~~~~~---~~~~-~-d--i~~~S~sk~K~l~~~~~G~~v~~~~-~l~~~--l---  221 (424)
T 2po3_A          155 DQLRKVADEHGLRLYFDAAHALGCAVDGRP---AGSL-G-D--AEVFSFHATKAVNAFEGGAVVTDDA-DLAAR--I---  221 (424)
T ss_dssp             HHHHHHHHHTTCEEEEECTTCTTCEETTEE---TTSS-S-S--EEEEECCTTSSSCCSSCEEEEESCH-HHHHH--H---
T ss_pred             HHHHHHHHHcCCEEEEECccccCCeECCee---cccc-c-C--EEEEeCCCCCCccCCCCeEEEeCCH-HHHHH--H---
Confidence            378999999999999999999 57665432   2211 1 2  8899999777778899999999842 34321  1   


Q ss_pred             hhhhhHHhhhhhhh--------hccC-cchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcc
Q 047983           80 HSISLNMRMDDYLL--------LSES-VYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGS  150 (233)
Q Consensus        80 ~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g  150 (233)
                            ........        .+.+ ..++..+...+   ...+.+++..++.+++++++.+.|++++++..+..|+++
T Consensus       222 ------~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l---~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~  292 (424)
T 2po3_A          222 ------RALHNFGFDLPGGSPAGGTNAKMSEAAAAMGL---TSLDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHG  292 (424)
T ss_dssp             ------HHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGS
T ss_pred             ------HHHHhcCccccccccccCcCCCcCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCC
Confidence                  11111100        0000 11222222222   122345667777888888888999887666543224443


Q ss_pred             ----EEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----------------CCc-------
Q 047983          151 ----MFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----------------KDW-------  203 (233)
Q Consensus       151 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----------------~~~-------  203 (233)
                          +.++         +.++.... +.  +.+.+.+.|.++||.+.+  .|++                .+.       
T Consensus       293 ~~~~~~~~---------i~~~~~~~-~~--~~~~l~~~L~~~gI~v~~--~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~  358 (424)
T 2po3_A          293 LNNHQYVI---------VEIDEATT-GI--HRDLVMEVLKAEGVHTRA--YFSPGCHELEPYRGQPHAPLPHTERLAARV  358 (424)
T ss_dssp             CCCCCCEE---------EEECHHHH-SS--CHHHHHHHHHHTTEECBC--TTCSCGGGSTTTTTSCCCCCHHHHHHHTTE
T ss_pred             ccccEEEE---------EEECCccc-hh--hHHHHHHHHHHCCCceec--ccCCccccchhhhhcCCCCChhHHHHhcCE
Confidence                2333         22321000 11  344555677788999987  2221                112       


Q ss_pred             EEEEee--cCHHHHHHHHHHHHHHHHHHh
Q 047983          204 LRITFA--VEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       204 ~Rl~~~--~~~~~l~~~~~~l~~~l~~~~  230 (233)
                      +|+++.  .++++++++++.|.+++++..
T Consensus       359 l~l~~~~~~t~e~i~~~~~~L~~~~~~~~  387 (424)
T 2po3_A          359 LSLPTGTAIGDDDIRRVADLLRLCATRGR  387 (424)
T ss_dssp             EEECCSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence            666533  389999999999999887653

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.50  E-value=8.5e-14  Score=120.75  Aligned_cols=58  Identities=14%  Similarity=0.208  Sum_probs=48.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceE-EEEEecC
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSD   66 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~-G~~~~~~   66 (233)
                      ++|+++|++||+++|+||+|..+.+..    ++ .   .+..+++.|+||.++++|+|+ ||+++++
T Consensus       169 ~~i~~l~~~~~~~li~De~~~~~~~~~----~~-~---~~~di~~~s~sK~~~~~g~~~~G~~~~~~  227 (398)
T 2rfv_A          169 ETVAGIAHQQGALLVVDNTFMSPYCQQ----PL-Q---LGADIVVHSVTKYINGHGDVIGGIIVGKQ  227 (398)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTCTTTCC----GG-G---GTCSEEEEETTTTTTCSSCCCCEEEEECH
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCC----ch-h---hCCcEEEEeCcccccCCCCceEEEEEECH
Confidence            378999999999999999999876532    12 1   245699999999999999999 9999987

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.50  E-value=4.1e-13  Score=119.73  Aligned_cols=202  Identities=10%  Similarity=-0.031  Sum_probs=124.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccC-----CCccc-cccccCCccCEEEEccCccccCCCCceEEEEEecCCCcccccc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFG-----NTHFV-PMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDL   74 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~-----~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~   74 (233)
                      ++|.++|++||+++|+|++|+.+...     +.... ++. .......+++.|++|. +.+|.++||+++++  ..+...
T Consensus       226 ~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~-~~~~g~d~~~~s~~K~-l~~~~~~g~~~~~~--~~~~~~  301 (497)
T 3mc6_A          226 EGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLD-FRVPGVTSISCDTHKY-GFAPKGSSVIMYRN--SDLRMH  301 (497)
T ss_dssp             TTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCS-TTSTTCCEEEEETTTT-TCCCSSCEEEECSS--HHHHTT
T ss_pred             HHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCcccc-ccCCCCcEEEECchhh-cCCCCCceeEEecC--HHHHhh
Confidence            47899999999999999999966432     11111 121 2222334778899997 67788999999987  222210


Q ss_pred             chhhhhhhhhHHhhh-hhhh--hccCcchH-HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCCc
Q 047983           75 GVAFFHSISLNMRMD-DYLL--LSESVYTT-VGAVPQILEKTEEEFFSKITDILREAADICCDRLKE-IPCITCPKKPEG  149 (233)
Q Consensus        75 ~~~~~~~~~~~~~~~-~~~~--~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~  149 (233)
                      ... .. .   .... .+..  +..+.+.. ..++...+..-....+.+..+.+.++++++.+.|++ ++++..+.+|.+
T Consensus       302 ~~~-~~-~---~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~  376 (497)
T 3mc6_A          302 QYY-VN-P---AWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRY  376 (497)
T ss_dssp             TSC-CB-T---TCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCS
T ss_pred             hhc-cc-c---cccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCe
Confidence            000 00 0   0000 0000  00111111 122222222223455678888899999999999998 788776456777


Q ss_pred             cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHHHHHHHH
Q 047983          150 SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       150 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l~~~l~~  228 (233)
                      +++.|           .. .   +.  +...+.+.|.++||.+.++..   .+.+|+++.. +.++++++++.|.+++++
T Consensus       377 ~~v~~-----------~~-~---~~--~~~~l~~~L~~~Gi~v~~~~~---~~~~ri~~~~~t~e~i~~~~~~L~~~l~~  436 (497)
T 3mc6_A          377 SVISF-----------SS-K---TL--NIHELSDRLSKKGWHFNALQK---PVALHMAFTRLSAHVVDEICDILRTTVQE  436 (497)
T ss_dssp             SEEEE-----------EC-T---TT--THHHHHHHHHTTTCBCEECCS---SCCEEEECCTTTTCTHHHHHHHHHHHHHH
T ss_pred             eEEEE-----------eC-C---CC--CHHHHHHHHHhCCEEEecCCC---CCeEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            77666           21 1   11  445556666678999876542   3478998886 788999999999999987


Q ss_pred             Hhh
Q 047983          229 HAK  231 (233)
Q Consensus       229 ~~~  231 (233)
                      ..+
T Consensus       437 ~~~  439 (497)
T 3mc6_A          437 LKS  439 (497)
T ss_dssp             HTC
T ss_pred             HHh
Confidence            653

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.50  E-value=1.3e-13  Score=118.80  Aligned_cols=193  Identities=9%  Similarity=0.056  Sum_probs=119.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCc-cccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCcc--ccccchh
Q 047983            1 FCIEETTKKLGIMVIADEVYGH-LVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI--LQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~--~~~~~~~   77 (233)
                      ++|.++|++||++||+||+|+. ..+.+.   ++..++    .+.+.||||..+++|.|.||+++++. .+  ++.   .
T Consensus       143 ~~i~~la~~~~~~li~D~a~~~g~~~~~~---~~~~~~----~i~~~S~s~~K~l~g~~~G~~~~~~~-~~~~~~~---~  211 (388)
T 1b9h_A          143 DALAKISADTGVPLLQDAAHAHGARWQGK---RVGELD----SIATFSFQNGKLMTAGEGGAVVFPDG-ETEKYET---A  211 (388)
T ss_dssp             HHHHHHHHHHTCCBCEECTTCTTCEETTE---EGGGSS----SCEEEECCTTSSSCSSSCEEEEECTT-CHHHHHH---H
T ss_pred             HHHHHHHHHcCCEEEEecchhcCCccCCe---eccccc----ceEEEEccCCCcccCCCeEEEEECCH-HHHHHHH---H
Confidence            3789999999999999999996 333332   122222    47899999877787889999999873 13  221   1


Q ss_pred             hhhhhhhHHhhhhhh-----------hhccC-cchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc
Q 047983           78 FFHSISLNMRMDDYL-----------LLSES-VYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPK  145 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~-----------~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  145 (233)
                              .......           ..+.+ ..++. ..+.+.  ...+++++.++.++++++++.+.|++++++....
T Consensus       212 --------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~a~~~--~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~  280 (388)
T 1b9h_A          212 --------FLRHSCGRPRDDRRYFHKIAGSNMRLNEF-SASVLR--AQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQG  280 (388)
T ss_dssp             --------HHHTBTTCCTTCSSCCCCSCCCBCBCBHH-HHHHHH--HHHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECC
T ss_pred             --------HHHHhCCCCccCccceeecccccCCcCHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Confidence                    1111100           00111 11221 111121  1234566788888899999999998886665322


Q ss_pred             C-----CCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC---------------------
Q 047983          146 K-----PEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG---------------------  199 (233)
Q Consensus       146 ~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~---------------------  199 (233)
                      .     +.+++++|         ++++...  +  .+.+.+.+.|.++||.+.++..-.                     
T Consensus       281 ~~~~~~~~~~~~~~---------~~~~~~~--~--~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (388)
T 1b9h_A          281 GDVRADRNSHYMAM---------FRIPGLT--E--ERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIAR  347 (388)
T ss_dssp             CCTTCCBCCCSEEE---------EECTTCC--H--HHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHH
T ss_pred             CCcCCCccceEEEE---------EEeCCcC--c--ccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCccccccccc
Confidence            1     35688999         5554210  0  034445555667899998764310                     


Q ss_pred             ---C-----CCcEEEEeec---CHHHHHHHHHHHHHHHHH
Q 047983          200 ---L-----KDWLRITFAV---EPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       200 ---~-----~~~~Rl~~~~---~~~~l~~~~~~l~~~l~~  228 (233)
                         .     .+.+|+++..   ++++++.+++.|++++++
T Consensus       348 ~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~  387 (388)
T 1b9h_A          348 RCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR  387 (388)
T ss_dssp             TCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence               0     1358999874   688999999999888754

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.50  E-value=1.8e-13  Score=121.48  Aligned_cols=58  Identities=19%  Similarity=0.122  Sum_probs=45.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC-CCceEEEEEecC
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSD   66 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~R~G~~~~~~   66 (233)
                      ++|+++|++||+++|+||+|....    ...++.    .++.+++.|+||.++. +|+|+||+++++
T Consensus       237 ~~i~~la~~~gi~livDea~~~g~----~~~~~~----~~~div~~S~sK~~~g~~Gl~~G~l~~~~  295 (464)
T 1ibj_A          237 RKISEMAHAQGALVLVDNSIMSPV----LSRPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKG  295 (464)
T ss_dssp             HHHHHHHHTTTCEEEEECTTTCTT----TCCGGG----TTCSEEEEETTTTTTCSSCCCCEEEEECS
T ss_pred             HHHHHHHHHcCCEEEEECCCcccc----cCChhh----cCCEEEEECCcccccCCCCCcEEEEEECh
Confidence            378999999999999999998622    111221    3567999999998865 499999999985

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.49  E-value=2.2e-13  Score=117.41  Aligned_cols=204  Identities=13%  Similarity=0.090  Sum_probs=114.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCc-cccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGH-LVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|+++|+++|+||+|+. ..+.+.   ++   ..  +.+++.|+||..+++|.|.||++++++ ++++.+.-...
T Consensus       144 ~~i~~l~~~~~~~li~D~a~~~g~~~~~~---~~---~~--~d~~~~S~~k~K~l~~~~~g~~~~~~~-~~~~~l~~~~~  214 (393)
T 1mdo_A          144 DAIYALGERYGIPVIEDAAHATGTSYKGR---HI---GA--RGTAIFSFHAIKNITCAEGGIVVTDNP-QFADKLRSLKF  214 (393)
T ss_dssp             HHHHHHHHHHTCCBCEECTTCTTCEETTE---ET---TS--SSEEEEECCTTSSSCSSSCEEEEESCH-HHHHHHHHHTB
T ss_pred             HHHHHHHHHcCCeEEEECccccCCeECCe---ec---CC--CCeEEEeCCCCCccccccceEEEeCCH-HHHHHHHHHHh
Confidence            3789999999999999999996 344332   11   11  568899999444556679999999742 34332110000


Q ss_pred             hhh--hhHHhh-----hhhh--hhc--cCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC-
Q 047983           80 HSI--SLNMRM-----DDYL--LLS--ESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKP-  147 (233)
Q Consensus        80 ~~~--~~~~~~-----~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-  147 (233)
                      +..  +....+     ..+.  ..+  ...+....+++..    ..+.+++..+..+++++.+.+.|++++ +..+..| 
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~----~l~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~  289 (393)
T 1mdo_A          215 HGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALA----QLQKLDALNARRAAIAAQYHQAMADLP-FQPLSLPS  289 (393)
T ss_dssp             TTEECC-----------CCEESSCCCBCCCCHHHHHHHHH----HHHTHHHHHHHHHHHHHHHHHHHHTSS-CEECCCCS
T ss_pred             cCCcccchhhhcccccccccccccCccCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccCCC
Confidence            000  000000     0000  000  0112221222111    112244556666678888888998875 4422222 


Q ss_pred             ----CccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCccc----------------C-----CCC
Q 047983          148 ----EGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITV----------------G-----LKD  202 (233)
Q Consensus       148 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f----------------~-----~~~  202 (233)
                          .+++++|         ++++.+.. +.  +.+.+.+.|.++||.+.+|..+                .     ...
T Consensus       290 ~~~~~~~~~~~---------v~~~~~~~-~~--~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (393)
T 1mdo_A          290 WEHIHAWHLFI---------IRVDEARC-GI--TRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSER  357 (393)
T ss_dssp             SCEECCCSCEE---------EECCHHHH-SS--CHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTT
T ss_pred             CCCCceeEEEE---------EEeccccc-cc--CHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhC
Confidence                4566788         55541000 11  3444555566789999997643                1     034


Q ss_pred             cEEEEeec--CHHHHHHHHHHHHHHHHHHh
Q 047983          203 WLRITFAV--EPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       203 ~~Rl~~~~--~~~~l~~~~~~l~~~l~~~~  230 (233)
                      ++|+++..  ++++++.+++.|+++++.+.
T Consensus       358 ~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~  387 (393)
T 1mdo_A          358 ICSLPLFPDMTESDFDRVITALHQIAGQGS  387 (393)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence            79999984  89999999999999887764

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.47  E-value=2.3e-13  Score=115.40  Aligned_cols=187  Identities=10%  Similarity=0.019  Sum_probs=112.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccC-CccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||+++|+||+|..+.++..+. ....+. ....-++..|.+|. +.+ ..+|++++++  .+++.  +    
T Consensus       168 ~i~~~~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~d~~~~s~~K~-g~~-~~~g~l~~~~--~~~~~--~----  236 (359)
T 1svv_A          168 DISASCKEHGLYLFLDGARLASALSSPVN-DLTLADIARLTDMFYIGATKA-GGM-FGEALIILND--ALKPN--A----  236 (359)
T ss_dssp             HHHHHHHHHTCEEEEECTTHHHHHTSTTC-CCCHHHHHHHCSEEEEECTTT-TCS-SCEEEEECSG--GGCTT--H----
T ss_pred             HHHHHHHHhCCEEEEEccchhhhhcCCCc-chhhhhhhhcCCEEEEecccC-CCC-CceEEEEEcc--cHHHH--H----
Confidence            68999999999999999996654332111 111100 01122678889996 543 5689999876  44432  1    


Q ss_pred             hhhhHHhhhhhhhhccC-cchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSES-VYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ............ .......++.+++.   ...++.++.++++++++.+.| +.+++.. ..|.+++|+|     
T Consensus       237 -----~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~L-~~~~~~~-~~~~~~~~~~-----  301 (359)
T 1svv_A          237 -----RHLIKQRGALMAKGWLLGIQFEVLMKD---NLFFELGAHSNKMAAILKAGL-EACGIRL-AWPSASNQLF-----  301 (359)
T ss_dssp             -----HHHHHHTTCCCTTTHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHH-HHTTCCB-SSCCSSSEEC-----
T ss_pred             -----HHHHhcCCcccccchhhHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHh-ccCCeEE-ccCCccceEE-----
Confidence                 111100111111 11111333444433   235678889999999999999 5456654 5678899999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                          +.+          ..++..++++++||.+.+ ......+++|++++  .+++++++++++|.+++++.
T Consensus       302 ----~~~----------~~~~~~~l~~~~gi~v~~-~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  358 (359)
T 1svv_A          302 ----PIL----------ENTMIAELNNDFDMYTVE-PLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST  358 (359)
T ss_dssp             ----BEE----------EHHHHHHHTTTEECEEEE-EETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred             ----EEc----------CHHHHHHHHHhcCEEEEe-cccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence                443          234555555444999932 11113579999876  38999999999999887653

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.19  E-value=5.6e-15  Score=131.09  Aligned_cols=194  Identities=10%  Similarity=0.040  Sum_probs=110.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||++||+||+|+ +.. +.    ..+.+..+....+.||||.++. |+|+||+++++  ++++.  +.. .
T Consensus       257 ~~l~~l~~~~g~llI~DEv~~-~r~-g~----~~a~~~~gv~pDi~t~sK~lg~-G~piG~v~~~~--~i~~~--l~~-~  324 (465)
T 2yky_A          257 DLLRAEASRCGALLIFDEVMT-SRL-SG----GGAQEMLGISADLTTLGKYIGG-GMSFGAFGGRR--DLMER--FDP-A  324 (465)
Confidence            468999999999999999999 733 22    1122222223446699999886 99999999988  55542  110 0


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP---CITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~~  157 (233)
                         ....+....+++.++..++++++.+ + ..++  ....+.++++.+++.+.|+++.   ++.. ..+..|.++|   
T Consensus       325 ---~~g~~~~~~T~~~npla~aAa~aaL-~-~l~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~g~G~~~~---  393 (465)
T 2yky_A          325 ---RDGAFAHAGTFNNNILTMSAGHAAL-T-QIYT--RQAASDLSASGDRFRANLNRIAVENQAPL-QFTGLGSLGT---  393 (465)
Confidence               0000112233444444443444443 1 1111  2345555566666666665531   1211 2334567777   


Q ss_pred             CCCcccccccc-c--ccC-----CCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNY-S--LLE-----GINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       158 ~~~~~~~~~~~-~--~~~-----~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                            +.++. +  .+.     .......+.. .+.++||.+.|+. |+.     +++..+++++++++++|.+++++.
T Consensus       394 ------i~~~~~~~~~~~~~~~~d~~~~~~~~~-~ll~~GV~v~p~~-~~~-----~s~~~t~edid~~l~~l~~~l~~~  460 (465)
T 2yky_A          394 ------IHFSRAPIRSAGDVRAADQQLKELFFF-HMLRKGIYLAPRG-MYA-----LSLEIADAGRDAFAEALADFIGEQ  460 (465)
Confidence                  33321 0  000     0001233444 4457899999976 332     777778999999999999998776


Q ss_pred             h
Q 047983          230 A  230 (233)
Q Consensus       230 ~  230 (233)
                      +
T Consensus       461 ~  461 (465)
T 2yky_A          461 R  461 (465)
Confidence            4

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.44  E-value=1.1e-12  Score=116.60  Aligned_cols=211  Identities=9%  Similarity=0.000  Sum_probs=121.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcccc-ccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVP-MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++++|++|+.+.+..+.... +..+.. ...+ ..|.+|.++.| +++||++++++..+.+.+...  
T Consensus       255 ~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~-adsi-~~~~hK~~~~p-~~~G~l~~~~~~~l~~~~~~~--  329 (486)
T 1js3_A          255 LEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEF-ADSF-NFNPHKWLLVN-FDCSAMWVKRRTDLTGAFKLD--  329 (486)
T ss_dssp             HHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGG-CSEE-EECHHHHSSCC-SSCEEEEESCHHHHHGGGC----
T ss_pred             HHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccc-cCee-EEchhhhcCCC-cceEEEEEeCHHHHHHHhcCC--
Confidence            37999999999999999999986653322211 222222 2234 46789986665 899999998731112211000  


Q ss_pred             hh-hhhHHh----hhhhhhhc--cCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEE
Q 047983           80 HS-ISLNMR----MDDYLLLS--ESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMF  152 (233)
Q Consensus        80 ~~-~~~~~~----~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~  152 (233)
                      .. ......    ...+...+  .+......++...+.....+.+++..+.+.++++++.+.|++++++....+|..+++
T Consensus       330 ~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v  409 (486)
T 1js3_A          330 PVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLV  409 (486)
T ss_dssp             ----------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEE
T ss_pred             chhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEE
Confidence            00 000000    00000000  010111112222222224567888889999999999999998877775445777776


Q ss_pred             EEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec---CHHHHHHHHHHHHHHHHHH
Q 047983          153 VMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV---EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~---~~~~l~~~~~~l~~~l~~~  229 (233)
                      .|          +++...  .  .+.++..+ |.++|+.+.++..|...+++|+++..   +++++++++++|++++++.
T Consensus       410 ~f----------~~~~~~--~--~~~~l~~~-L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~  474 (486)
T 1js3_A          410 CF----------RLKGSD--G--LNEALLER-INSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL  474 (486)
T ss_dssp             EE----------EESSCH--H--HHHHHHHH-HHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EE----------EecChH--H--HHHHHHHH-HHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            65          122100  0  03344444 44567655444456556799999863   6889999999999988776


Q ss_pred             hh
Q 047983          230 AK  231 (233)
Q Consensus       230 ~~  231 (233)
                      .+
T Consensus       475 ~~  476 (486)
T 1js3_A          475 LA  476 (486)
T ss_dssp             HC
T ss_pred             Hh
Confidence            43

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.44  E-value=2.2e-13  Score=115.45  Aligned_cols=183  Identities=15%  Similarity=0.164  Sum_probs=102.2

Q ss_pred             hHHHHHHHcCcEEEEccccCcc--ccCCCccccccccCCccCEEEEccCccccCCCCceEEE-EEecCCCccccccchhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHL--VFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGW-LVTSDPNGILQDLGVAF   78 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~--~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~-~~~~~~~~~~~~~~~~~   78 (233)
                      +|+++|++||+++|+||+|...  .+.+....++.  ...+.  ++.|+||.++++   +|| +++++  +++++   . 
T Consensus       157 ~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~--~~~d~--~~~s~sK~l~~~---~G~~~~~~~--~~~~~---~-  223 (347)
T 1jg8_A          157 EICTIAKEHGINVHIDGARIFNASIASGVPVKEYA--GYADS--VMFCLSKGLCAP---VGSVVVGDR--DFIER---A-  223 (347)
T ss_dssp             HHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHH--HTCSE--EEEESSSTTCCS---SCEEEEECH--HHHHH---H-
T ss_pred             HHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhc--ccccE--EEEecccccCCC---ceEEEEcCH--HHHHH---H-
Confidence            6889999999999999987532  12222111111  12233  334899987654   675 55554  34321   1 


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                             ..++.....+.......  .+...+ +.    +.+.+++ ..++++.+.+.|+++ ++.....|.++.|+|  
T Consensus       224 -------~~~~~~~~~~~~~~~~~~~~~~~~l-~~----~~~~~~~-~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~--  287 (347)
T 1jg8_A          224 -------RKARKMLGGGMRQAGVLAAAGIIAL-TK----MVDRLKE-DHENARFLALKLKEI-GYSVNPEDVKTNMVI--  287 (347)
T ss_dssp             -------HHHHHHHTCCCSSTHHHHHHHHHHH-HH----SSTTHHH-HHHHHHHHHHHHHHH-TCBCCGGGCCSSEEE--
T ss_pred             -------HHHHHHcCCchhHHHHHHHHHHHHH-HH----HHHHHHH-HHHHHHHHHHHHHhc-CceeccCCCcceEEE--
Confidence                   22222222111122222  222222 11    1112222 234667788888776 443212344566788  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                             ++++..   +. +..++..++ .++||.+.|+.    .+++|+++..  +++++++++++|.+++++.
T Consensus       288 -------~~~~~~---~~-~~~~~~~~l-~~~gi~v~~~~----~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~  346 (347)
T 1jg8_A          288 -------LRTDNL---KV-NAHGFIEAL-RNSGVLANAVS----DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF  346 (347)
T ss_dssp             -------EECTTS---SS-CHHHHHHHH-HHHTEECEEEE----TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             -------EEcccc---cC-CHHHHHHHH-HHCCCEEecCC----CCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence                   555421   11 345555554 57899999853    4789999864  8999999999999988653

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.44  E-value=1.8e-13  Score=120.82  Aligned_cols=196  Identities=17%  Similarity=0.174  Sum_probs=113.3

Q ss_pred             hHHHHHHHcCcEEEEccccCc----------cccCCCcccccc-c-cCCccCEEEEccCccccCCC-CceEEEEEecCCC
Q 047983            2 CIEETTKKLGIMVIADEVYGH----------LVFGNTHFVPMG-V-FGSIVPVLTLGSISKRWIVP-GWRLGWLVTSDPN   68 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~----------~~~~~~~~~~~~-~-~~~~~~~i~~~s~sK~~~~~-G~R~G~~~~~~~~   68 (233)
                      +|+++|++||++||+|+++..          ..+.+.....+. . ....+  +++.|+||.+++| |   ||+++++  
T Consensus       208 ~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d--~~~~s~sK~~g~~~G---g~~~~~~--  280 (467)
T 2oqx_A          208 AMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYAD--MLAMSAKKDAMVPMG---GLLCMKD--  280 (467)
T ss_dssp             HHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCS--EEEEESSSTTCCSSC---EEEEECS--
T ss_pred             HHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCC--eEEEecccccCCCCc---eEEEecC--
Confidence            689999999999999955432          223332211111 0 01112  3478999998877 6   8888876  


Q ss_pred             c-cccccchhhhhhhhhHHhhhhhhhhc-----cCcchHHHHHHHHhhhcHHHHHH-HHHHHHHHHHHHHHHHhhcCCCc
Q 047983           69 G-ILQDLGVAFFHSISLNMRMDDYLLLS-----ESVYTTVGAVPQILEKTEEEFFS-KITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        69 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                      . +++   ..        .+++.....+     .+.... .+++++ .....++++ +..+...++++.+.+.|+++ ++
T Consensus       281 ~~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~al-~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~~  346 (467)
T 2oqx_A          281 DSFFD---VY--------TECRTLCVVQEGFPTYGGLEG-GAMERL-AVGLYDGMNLDWLAYRIAQVQYLVDGLEEI-GV  346 (467)
T ss_dssp             GGGHH---HH--------HHHHHHHHHTTSSCCCCCCCH-HHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             hhHHH---HH--------HHHHHhhhccCCcccccchhh-hHHHHH-HHhhHhhhhHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            3 332   22        2233221111     111122 222222 111122221 23344567888999999887 56


Q ss_pred             ccccCCCccEEEEEecCCCcccccccccccCCCCC----hHHHHHHHHhccCEEEECCccc--C-----------CCCcE
Q 047983          142 TCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINS----DTEFALKLAKEESIIVLPGITV--G-----------LKDWL  204 (233)
Q Consensus       142 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gi~v~pg~~f--~-----------~~~~~  204 (233)
                      .. . |.+++++|         +.++.. .++..+    ...++.+++.++||.+.|++.|  +           ..+++
T Consensus       347 ~~-~-~~~~~~~~---------~~~~~~-~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~i  414 (467)
T 2oqx_A          347 VC-Q-QAGGHAAF---------VDAGKL-LPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELL  414 (467)
T ss_dssp             CE-E-EECSSCEE---------EEHHHH-STTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEE
T ss_pred             ee-e-cCCceEEE---------Eechhh-cccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeE
Confidence            54 4 77889999         444210 001110    2223555548889999996543  2           13799


Q ss_pred             EEEee---cCHHHHHHHHHHHHHHHHHHh
Q 047983          205 RITFA---VEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       205 Rl~~~---~~~~~l~~~~~~l~~~l~~~~  230 (233)
                      |+++.   .+++++++++++|.+++++..
T Consensus       415 Rl~~~~~~~t~e~i~~~~~~l~~~l~~~~  443 (467)
T 2oqx_A          415 RLTIPRATYTQTHMDFIIEAFKHVKENAA  443 (467)
T ss_dssp             EECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            99998   679999999999999987643

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.43  E-value=5.1e-12  Score=112.78  Aligned_cols=197  Identities=16%  Similarity=0.099  Sum_probs=124.3

Q ss_pred             ChHHHHHHHcCcEEEEccccC-ccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCcccc--c----
Q 047983            1 FCIEETTKKLGIMVIADEVYG-HLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQ--D----   73 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~--~----   73 (233)
                      ++|.++|++||+++++|+++. +++..+..+.++.  .. +  +++.|++|++  .|.|.|++++++  .+.+  +    
T Consensus       221 ~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~a-D--iv~~S~hK~l--~Gp~GG~i~~~~--~~~~~~~~~~~  291 (490)
T 2a7v_A          221 ARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HA-D--IVTTTTHKTL--RGARSGLIFYRK--GVKAVDPKTGR  291 (490)
T ss_dssp             HHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TC-S--EEEEESSGGG--CSCSCEEEEEEC--SEEEEETTTEE
T ss_pred             HHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--CC-C--EEEECCcccC--ccccchheeecc--chhcccccccc
Confidence            378999999999999999975 5555554333442  11 2  7889999986  366779999987  2210  0    


Q ss_pred             ---cchhhhhhhhhHHhhhhhhhh--ccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC
Q 047983           74 ---LGVAFFHSISLNMRMDDYLLL--SESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKP  147 (233)
Q Consensus        74 ---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  147 (233)
                         ..+.        .+++.....  ..+++... ++++..+.....+..++.++++.++++++.+.|++. ++.....+
T Consensus       292 ~~~~~l~--------~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~-G~~v~~~~  362 (490)
T 2a7v_A          292 EIPYTFE--------DRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGG  362 (490)
T ss_dssp             EEECCCH--------HHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGS
T ss_pred             hhhHHHH--------HHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc-CcEEecCC
Confidence               0122        344433221  11222222 444433322222345778899999999999999886 55542233


Q ss_pred             CccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-----CCcEEEEee------cCHHHHH
Q 047983          148 EGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-----KDWLRITFA------VEPSAFE  216 (233)
Q Consensus       148 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----~~~~Rl~~~------~~~~~l~  216 (233)
                      ...+++|         +.+  +.. ++  +...+.+.|++.||.+.++..++.     .+.+|++..      .++++++
T Consensus       363 t~t~lv~---------vdl--~~~-g~--~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~  428 (490)
T 2a7v_A          363 TDNHLVL---------VDL--RPK-GL--DGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFR  428 (490)
T ss_dssp             CSSSEEE---------EEC--TTT-TC--CHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHH
T ss_pred             CCCeEEE---------EEe--CCC-CC--CHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHH
Confidence            4567788         433  221 22  456677888899999986544432     478999663      2688999


Q ss_pred             HHHHHHHHHHHHH
Q 047983          217 IGLGRMKAFYYRH  229 (233)
Q Consensus       217 ~~~~~l~~~l~~~  229 (233)
                      ++.+.|.+++...
T Consensus       429 ~~~~~i~~~l~~~  441 (490)
T 2a7v_A          429 RVVDFIDEGVNIG  441 (490)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9998888887643

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.42  E-value=2.9e-12  Score=111.24  Aligned_cols=58  Identities=22%  Similarity=0.253  Sum_probs=47.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceE-EEEEecC
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSD   66 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~-G~~~~~~   66 (233)
                      ++|+++|++||+++|+||+|..+.+..    ++    ..+..+++.|+||.++++|.|+ ||+++++
T Consensus       170 ~~i~~l~~~~~~~li~D~~~~~~~~~~----~~----~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~  228 (398)
T 1gc0_A          170 AGVAKIARKHGATVVVDNTYCTPYLQR----PL----ELGADLVVHSATKYLSGHGDITAGIVVGSQ  228 (398)
T ss_dssp             HHHHHHHGGGTCEEEEECTTTHHHHCC----GG----GGTCSEEEEETTTTTTCSSSCCCEEEEECH
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCC----ch----hhCceEEEECCccccCCCCCCeEEEEEECh
Confidence            378999999999999999999765432    12    1235589999999999999998 9999886

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.42  E-value=1.8e-12  Score=115.72  Aligned_cols=210  Identities=15%  Similarity=0.077  Sum_probs=121.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||+++++|++|+.+.+..+....+..+..  .-+++.|++|.++.| .++||++++++ ..++.  +.. .
T Consensus       278 ~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~--~D~i~~s~hK~l~~p-~~~G~l~~~~~-~~~~~--~~~-~  350 (497)
T 2qma_A          278 DFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVER--AHSISVDFHKLFYQT-ISCGALLVNDK-SNFKF--LLH-H  350 (497)
T ss_dssp             HHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGG--CSEEEEETTTTTCCC-SSCEEEEESCG-GGGGG--GCC--
T ss_pred             HHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCccc--CCEEEEcchhccCCC-cceEEEEEeCH-HHHHH--hcC-C
Confidence            37899999999999999999987764431111222211  126677899986766 69999999874 22221  110 0


Q ss_pred             hhhhHHh---hhhhhhhcc--CcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEE
Q 047983           81 SISLNMR---MDDYLLLSE--SVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        81 ~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~  155 (233)
                      ...+...   .......+.  +....+..+...+.....+.+++..+.+.++++++.+.|++++++..+.+|.++++.+ 
T Consensus       351 ~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f-  429 (497)
T 2qma_A          351 ADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLF-  429 (497)
T ss_dssp             -------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSSEEEE-
T ss_pred             chhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCceEEEE-
Confidence            0000000   000000000  0000011111112222345677888889999999999999887776544666665544 


Q ss_pred             ecCCCcccccccccccCCCCCh-HHHHHHHHhccCEEEECCcccCCCCcEEEEee---cCHHHHHHHHHHHHHHHHHH
Q 047983          156 CGSEDKCLLKLNYSLLEGINSD-TEFALKLAKEESIIVLPGITVGLKDWLRITFA---VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~---~~~~~l~~~~~~l~~~l~~~  229 (233)
                               ++....  ...+. ...+...+.+.|+.+.++..+...+++|+++.   .++++++++++.|.+++++.
T Consensus       430 ---------~~~~~~--~~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~  496 (497)
T 2qma_A          430 ---------RATHET--ADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL  496 (497)
T ss_dssp             ---------EECCSS--SCHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             ---------EEcCCc--cCHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence                     221110  00000 12344556677998887666665679999983   38999999999999988754

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.42  E-value=1.8e-12  Score=109.30  Aligned_cols=58  Identities=17%  Similarity=0.175  Sum_probs=47.7

Q ss_pred             ChHHHHHHH-cCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCce-EEEEEecC
Q 047983            1 FCIEETTKK-LGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWR-LGWLVTSD   66 (233)
Q Consensus         1 ~~i~~l~~~-~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R-~G~~~~~~   66 (233)
                      ++|.++|++ +|+++|+||+|..+.+..    ++    ..++.+++.|+||.+++||.| +||+++++
T Consensus       103 ~~i~~~~~~~~~~~li~D~a~~~~~~~~----~~----~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~  162 (331)
T 1pff_A          103 EDAVKQARKQKDILVIVDNTFASPILTN----PL----DLGVDIVVHSATKYINGHTDVVAGLVCSRA  162 (331)
T ss_dssp             HHHHHHHTTSSSCEEEEECTTTHHHHCC----GG----GGTCSEEEEETTTTTSSSSSCCCEEEEECH
T ss_pred             HHHHHHHhhhcCCEEEEECCCcccccCC----hh----hcCCcEEEEECccccCCCCCceEEEEEeCc
Confidence            368999999 999999999999765431    22    235679999999999999999 89999875

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.42  E-value=2.3e-12  Score=113.71  Aligned_cols=195  Identities=17%  Similarity=0.143  Sum_probs=110.2

Q ss_pred             hHHHHHHHcCcEEEEccccCc--c--------ccCCCccccccccC----CccCEEEEccCccccCCC-CceEEEEEecC
Q 047983            2 CIEETTKKLGIMVIADEVYGH--L--------VFGNTHFVPMGVFG----SIVPVLTLGSISKRWIVP-GWRLGWLVTSD   66 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~--~--------~~~~~~~~~~~~~~----~~~~~i~~~s~sK~~~~~-G~R~G~~~~~~   66 (233)
                      +|+++|++||++||+||++..  .        .+.+.   ++..+.    .... +++.|+||.++++ |   ||+++++
T Consensus       208 ~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d-~~~~s~sK~~g~~~G---g~~~~~d  280 (467)
T 1ax4_A          208 EVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNA---TIKEVIFDMYKYAD-ALTMSAKKDPLLNIG---GLVAIRD  280 (467)
T ss_dssp             HHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTC---CHHHHHHHHGGGCS-EEEEETTSTTCCSSC---EEEEESS
T ss_pred             HHHHHHHHcCCEEEEEchhhhhcchhccccccccCCC---chhhhhhhhccccc-eEEEeccccCCCCcc---eEEEeCC
Confidence            689999999999999998543  1        12221   222221    1111 4568999998776 5   7777764


Q ss_pred             CCccccccchhhhhhhhhHHhhhhhh-hh-ccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 047983           67 PNGILQDLGVAFFHSISLNMRMDDYL-LL-SESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCIT  142 (233)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  142 (233)
                      ..++++.  +         ....... .. ..+..+..  .+++..++...+   .+..+...++++.+.+.|++ .++.
T Consensus       281 ~~~l~~~--~---------~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~-~~~~  345 (467)
T 1ax4_A          281 NEEIFTL--A---------RQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLRE-AGIP  345 (467)
T ss_dssp             CHHHHHH--H---------HHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHH-TTCC
T ss_pred             HHHHHHH--H---------HhhccccccccccCCccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHh-CCCC
Confidence            2023321  1         1111110 00 11111111  222222221111   11222233667788888877 3555


Q ss_pred             cccCCCccEEEEEecCCCccccccc-----ccccCCCCChHHHHHHHHhccCEEEEC-Cccc-C-----------CCCcE
Q 047983          143 CPKKPEGSMFVMYCGSEDKCLLKLN-----YSLLEGINSDTEFALKLAKEESIIVLP-GITV-G-----------LKDWL  204 (233)
Q Consensus       143 ~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f-~-----------~~~~~  204 (233)
                      . ..|.+|+++|         +.+.     .+. .+. +..+++.++++++||.+.| |+.+ +           ..+++
T Consensus       346 ~-~~~~~~~~~~---------~~~~~~~~~~~~-~~~-~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~i  413 (467)
T 1ax4_A          346 I-QYPTGGHAVF---------VDCKKLVPQIPG-DQF-PAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFM  413 (467)
T ss_dssp             B-CSSCCSSEEE---------EESTTTCTTSCG-GGC-HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEE
T ss_pred             c-ccCCCceEEE---------Eehhhhcccccc-CCC-CHHHHHHHHHHhcCceeeecCccccccccccccccccccceE
Confidence            3 5788999999         4411     111 011 2455666665889999999 6543 1           13789


Q ss_pred             EEEee---cCHHHHHHHHHHHHHHHHHHh
Q 047983          205 RITFA---VEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       205 Rl~~~---~~~~~l~~~~~~l~~~l~~~~  230 (233)
                      |+++.   .+++++++++++|.+++++..
T Consensus       414 Rls~~~~~~t~e~i~~~~~~l~~~~~~~~  442 (467)
T 1ax4_A          414 RLTIARRVYTNDHMDYIADALIGLKEKFA  442 (467)
T ss_dssp             EEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred             EEecccccCCHHHHHHHHHHHHHHHHhhh
Confidence            99998   479999999999999887753

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.42  E-value=1.4e-12  Score=114.20  Aligned_cols=185  Identities=12%  Similarity=0.041  Sum_probs=108.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|++||+||+|....+..    ++    .....+++.|+||.++.+| +|+||+++++  ..+.       
T Consensus       186 ~~i~~la~~~g~~livDe~~~~~~~~~----~~----~~g~div~~S~sK~l~~~G~~~~G~vv~~~--~~~~-------  248 (414)
T 3ndn_A          186 AAVTELAHAAGAKVVLDNVFATPLLQQ----GF----PLGVDVVVYSGTKHIDGQGRVLGGAILGDR--EYID-------  248 (414)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTHHHHCC----CG----GGTCSEEEEETTTTTTCSSCCCCEEEEECH--HHHT-------
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCC----ch----hcCCCeEeccCCccccCCCCceEEEEEECH--HHHH-------
Confidence            378999999999999999998533221    12    1123488999999999988 9999999987  3332       


Q ss_pred             hhhhhHHhhhhh-hhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC----------
Q 047983           80 HSISLNMRMDDY-LLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE----------  148 (233)
Q Consensus        80 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------  148 (233)
                            ..++.. ...+...++...+ ..+   ...+.+....+...++++.+.+.|++.+.+.....|.          
T Consensus       249 ------~~l~~~~~~~g~~~~~~~a~-~~~---~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~  318 (414)
T 3ndn_A          249 ------GPVQKLMRHTGPAMSAFNAW-VLL---KGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLA  318 (414)
T ss_dssp             ------THHHHHHHHHCCCCCHHHHH-HHH---HHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHH
T ss_pred             ------HHHHHHHHHcCCCCCHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHH
Confidence                  122211 1222223333211 111   1223345556677788889999998766543212221          


Q ss_pred             ------ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC-----------------------
Q 047983          149 ------GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG-----------------------  199 (233)
Q Consensus       149 ------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-----------------------  199 (233)
                            .|..+|         +.++-... ........+...++..++.+.+|+.+.                       
T Consensus       319 ~~~~~g~G~~l~---------~~l~~~~~-~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~  388 (414)
T 3ndn_A          319 KRQMSGGGTVVT---------FALDCPED-VAKQRAFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGL  388 (414)
T ss_dssp             HHHCSSCCSEEE---------EEECSCGG-GHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTC
T ss_pred             HHhCCCCceEEE---------EEEcCCcc-ccHHHHHHHHHhCccceEcCCCCCCCceeeCccccccccCCHHHHHhcCC
Confidence                  466777         55532100 000134455566667788888877542                       


Q ss_pred             CCCcEEEEeec-CHHHHHHHHHHHHHH
Q 047983          200 LKDWLRITFAV-EPSAFEIGLGRMKAF  225 (233)
Q Consensus       200 ~~~~~Rl~~~~-~~~~l~~~~~~l~~~  225 (233)
                      .++++|+|++. +.+   ..++.|.++
T Consensus       389 ~~~~iRlsvG~e~~~---dli~dl~~a  412 (414)
T 3ndn_A          389 GDGVVRISVGLEDTD---DLIADIDRA  412 (414)
T ss_dssp             CTTEEEEECCSSCHH---HHHHHHHHH
T ss_pred             CCCeEEEEeCcCCHH---HHHHHHHHh
Confidence            15789999997 344   444444443

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.42  E-value=1.4e-12  Score=113.55  Aligned_cols=203  Identities=18%  Similarity=0.182  Sum_probs=114.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccc-cCCCccccccccCCccCEEEEccC--ccccCCCCceEEEEEecCCCccccccchh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLV-FGNTHFVPMGVFGSIVPVLTLGSI--SKRWIVPGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~--sK~~~~~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++|+++|++||++||+||+|..+. +++..   +..+.  +  +.+.||  ||.++. | |.||++++++ .+++.+   
T Consensus       147 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~---~~~~~--~--~~~~s~s~~K~~~~-g-~~g~~~~~~~-~l~~~~---  213 (418)
T 2c81_A          147 DEINEIAQEHNLFVIEDCAQSHGSVWNNQR---AGTIG--D--IGAFSCQQGKVLTA-G-EGGIIVTKNP-RLFELI---  213 (418)
T ss_dssp             HHHHHHHHHTTCEEEEECTTCTTCEETTEE---TTSSS--S--EEEEECCTTSSSCS-S-SCEEEEESCH-HHHHHH---
T ss_pred             HHHHHHHHHCCCEEEEECcccccCccCCEe---ccccc--c--eEEEeccCCcccCC-C-CeEEEEECCH-HHHHHH---
Confidence            378999999999999999999986 54422   11111  2  667777  999877 8 9999999642 333211   


Q ss_pred             hhhhhhhHHhhhhhhh------------hc--c---C---cchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhh
Q 047983           78 FFHSISLNMRMDDYLL------------LS--E---S---VYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLK  136 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~~------------~~--~---~---~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  136 (233)
                              ........            +.  .   .   ..... ...+++. ....+.+++..+..+++++++.+.|+
T Consensus       214 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~-~~~l~~~~~~~~~~~~~~~~l~~~L~  284 (418)
T 2c81_A          214 --------QQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAIL-LDQLQELDDKNAIREKNAMFLNDALS  284 (418)
T ss_dssp             --------HHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHH-HHHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             --------HHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                    11111100            00  0   0   00000 1111111 11123456667777788889999998


Q ss_pred             cCCCcccccCCCc-cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhcc-CEE---EECCccc-------------
Q 047983          137 EIPCITCPKKPEG-SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEE-SII---VLPGITV-------------  198 (233)
Q Consensus       137 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-gi~---v~pg~~f-------------  198 (233)
                      +++++..+..|++ +...|.++     .+.++.....+.  +.+.+.+.|.++ ||.   +.+|..-             
T Consensus       285 ~~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~  357 (418)
T 2c81_A          285 KIDGIKVMKRPPQVSRQTYYGY-----VFRFDPVKFGGL--NADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKN  357 (418)
T ss_dssp             TSTTEEECCCCTTEEECCCSEE-----EEEECGGGTTTC--CHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCT
T ss_pred             cCCCcccCCCCCCCcccccEEE-----EEEEcccccccc--CHHHHHHHHHHcCCCCcccccccccccccCchhcccccc
Confidence            8877664335655 33222000     012321000012  334444455566 999   8887511             


Q ss_pred             ---------------CC--------CCcEEEEee--c-CHHHHHHHHHHHHHHHHHHhhc
Q 047983          199 ---------------GL--------KDWLRITFA--V-EPSAFEIGLGRMKAFYYRHAKK  232 (233)
Q Consensus       199 ---------------~~--------~~~~Rl~~~--~-~~~~l~~~~~~l~~~l~~~~~~  232 (233)
                                     +.        .+.+|+++.  . ++++++.+++.|++++++...+
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~~~~  417 (418)
T 2c81_A          358 RYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKFCVT  417 (418)
T ss_dssp             TSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTTC--
T ss_pred             cccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhhccC
Confidence                           00        147999996  3 7889999999999988766543

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.40  E-value=3.6e-12  Score=111.28  Aligned_cols=197  Identities=12%  Similarity=0.047  Sum_probs=112.2

Q ss_pred             ChHHHHHHHcC----------cEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCcc
Q 047983            1 FCIEETTKKLG----------IMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI   70 (233)
Q Consensus         1 ~~i~~l~~~~~----------~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~   70 (233)
                      ++|.++|++++          ++||+||+|+...    .+..+.....  . +++.|+||.+   |.|+||+++++.  .
T Consensus       195 ~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~----~~~~~~~~~~--d-~~~~s~~K~~---g~~~G~~~~~~~--~  262 (432)
T 3a9z_A          195 SEISRRIKALNQIRAASGLPRVLVHTDAAQALGK----RRVDVEDLGV--D-FLTIVGHKFY---GPRIGALYVRGV--G  262 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTT----SCCCHHHHCC--S-EEEEEGGGTT---CCSCEEEEETTB--T
T ss_pred             HHHHHHHHhcCcccccccCCceEEEEEchhhhCC----cccChhhcCC--C-EEEEehhHhc---CCcceEEEEccc--c
Confidence            37899999999          9999999997632    2222322222  2 5689999975   467999999872  2


Q ss_pred             -ccccchhhhhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cCC-
Q 047983           71 -LQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCP-KKP-  147 (233)
Q Consensus        71 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~-  147 (233)
                       .+.  +.... .+ ..........+.+...+ .++.+.++ ...+++++.++.++++++++.+.|++++++... ..| 
T Consensus       263 ~~~~--~~~~~-~~-~~~~~~~~~~~~~~~~~-~a~~aal~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  336 (432)
T 3a9z_A          263 KLTP--LYPML-FG-GGQERNFRPGTENTPMI-AGLGKAAD-LVSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRF  336 (432)
T ss_dssp             TTBC--CCCSC-CS-SCGGGGTSCSCCCHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCC
T ss_pred             ccCC--cCcee-ec-CCccccccCCCcCHHHH-HHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCC
Confidence             211  11000 00 00001111112222222 33333332 223467888999999999999999875333211 122 


Q ss_pred             ----CccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--------------------CCc
Q 047983          148 ----EGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--------------------KDW  203 (233)
Q Consensus       148 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--------------------~~~  203 (233)
                          ..+..++         +.++..   +. +..+.. ..+  .++.+.+|..+.+                    .++
T Consensus       337 ~~~~~~~~~~~---------~~~~~~---~~-~~~~~~-~~l--~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~  400 (432)
T 3a9z_A          337 PGVERLPNTCN---------FSIQGS---QL-RGYMVL-AQC--QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNA  400 (432)
T ss_dssp             TTCCBCTTEEE---------EEECST---TC-CHHHHH-HHC--SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTE
T ss_pred             CcccCCCCEEE---------EEeCCC---CC-cHHHHH-HHh--cCeEEeccccccCCCCCCccHHHHhcCCCccccCce
Confidence                1222333         222210   11 133332 323  3788777765421                    378


Q ss_pred             EEEEeec--CHHHHHHHHHHHHHHHHHHhh
Q 047983          204 LRITFAV--EPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       204 ~Rl~~~~--~~~~l~~~~~~l~~~l~~~~~  231 (233)
                      +|++++.  +++++++++++|++++++.++
T Consensus       401 iRis~~~~~t~eei~~~~~~l~~~~~~~~~  430 (432)
T 3a9z_A          401 VRLSVGRSTTRAEVDLIVQDLKQAVNQLEG  430 (432)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            9999996  799999999999999987654

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.39  E-value=2.4e-12  Score=109.98  Aligned_cols=192  Identities=9%  Similarity=0.040  Sum_probs=113.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCc--cccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSIS--KRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s--K~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|.++|++||+++|+||+|+.......     ..++... .+.+.|+|  |.++. |  +||+++.+.+++++.  +  
T Consensus       138 ~~i~~l~~~~~~~li~D~a~~~~~~~~~-----~~~~~~~-~i~~~s~s~~K~~~~-g--~g~~~~~~~~~~~~~--~--  204 (375)
T 2fnu_A          138 ESVQKLCKKHSLSFLSDSSHALGSEYQN-----KKVGGFA-LASVFSFHAIKPITT-A--EGGAVVTNDSELHEK--M--  204 (375)
T ss_dssp             HHHHHHHHHHTCEEEEECTTCTTCEETT-----EETTSSS-SEEEEECCTTSSSCC-S--SCEEEEESCHHHHHH--H--
T ss_pred             HHHHHHHHHcCCEEEEECccccCCeECC-----eeccccC-CeEEEeCCCCCCccc-c--CceEEEeCCHHHHHH--H--
Confidence            3789999999999999999987543211     1122212 37788888  98765 6  788888532134321  1  


Q ss_pred             hhhhhhHHhhhhhhh------------hccC-cchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc
Q 047983           79 FHSISLNMRMDDYLL------------LSES-VYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPK  145 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~------------~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  145 (233)
                             ........            .+.+ ......+...+.   ..+++++..+.++++++++.+.|++++++.. .
T Consensus       205 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~  273 (375)
T 2fnu_A          205 -------KLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLS---QLKKAPFLMQKREEAALTYDRIFKDNPYFTP-L  273 (375)
T ss_dssp             -------HHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHH---HHTTHHHHHHHHHHHHHHHHHHHTTCSSEEE-S
T ss_pred             -------HHHHhcCCccccccccccccccccCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-c
Confidence                   11111000            1111 112221222221   1235567788899999999999998876654 2


Q ss_pred             CC----Cc-cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEEC----Cc---ccC-------C------
Q 047983          146 KP----EG-SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLP----GI---TVG-------L------  200 (233)
Q Consensus       146 ~~----~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p----g~---~f~-------~------  200 (233)
                      .+    .+ ++++|         +.++...   . .+...+.+.|.++||.+.+    +.   .|+       .      
T Consensus       274 ~~~~~~~~~~~~~~---------~~~~~~~---~-~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~  340 (375)
T 2fnu_A          274 HPLLKDKSSNHLYP---------ILMHQKF---F-TCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDF  340 (375)
T ss_dssp             GGGCSSCCCCSCEE---------EEECGGG---G-GGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHH
T ss_pred             CCCCCCCcceEEEE---------EEeCccc---c-chHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHH
Confidence            33    12 34446         4443210   0 0234445556688999983    22   121       0      


Q ss_pred             -CCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          201 -KDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       201 -~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                       .+++|+++..  ++++++++++.|++++++.
T Consensus       341 ~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~  372 (375)
T 2fnu_A          341 YHAEISLPCHANLNLESVQNIAHSVLKTFESF  372 (375)
T ss_dssp             HHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence             2679999985  7899999999999988765

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.38  E-value=1.3e-12  Score=111.70  Aligned_cols=191  Identities=13%  Similarity=0.131  Sum_probs=112.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccc-cCCCccccccccCCccCEEEEccCc--cccCCCCceEEEEEecCCCccccccchh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLV-FGNTHFVPMGVFGSIVPVLTLGSIS--KRWIVPGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~s--K~~~~~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++|.++|++||+++|+||+|..+. +++.....   . .   .+++.|+|  |.++.+|. .||+++++. .+.+.   +
T Consensus       142 ~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~---~-~---d~~~~s~~~~K~l~~~g~-~g~~~~~~~-~~~~~---~  209 (374)
T 3uwc_A          142 PALAKIAKKHNLHIVEDACQTILGRINDKFVGS---W-G---QFACFSLHPLKNLNVWSD-AGVIITHSD-EYAEK---L  209 (374)
T ss_dssp             HHHHHHHHHTTCEEEEECTTCTTCEETTEETTS---S-S---SEEEEECSSSSSSCCSSC-CEEEEESCH-HHHHH---H
T ss_pred             HHHHHHHHHcCCEEEEeCCCccCceeCCeeccc---c-c---cEEEEeCCCCCcCCccce-eEEEEeCCH-HHHHH---H
Confidence            378999999999999999999753 22221111   1 1   26677755  99776565 899888762 22211   1


Q ss_pred             hhhhhhhHHhhhhh----------hhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cccccC
Q 047983           78 FFHSISLNMRMDDY----------LLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC-ITCPKK  146 (233)
Q Consensus        78 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~  146 (233)
                              ..+...          ...+........++...    ..+.+++..+..+++.+.+.+.|+++++ +..+..
T Consensus       210 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  277 (374)
T 3uwc_A          210 --------RLYRNHGLINRDVCVEYGINCRMDTIQAVIANR----LMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVR  277 (374)
T ss_dssp             --------HHHTBTTEEETTEESSCCCBCBCCHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCC
T ss_pred             --------HHHHhcCccccCccccccccCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccC
Confidence                    111110          00111111211222211    1123455667777888888888888766 544334


Q ss_pred             CCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC------------------C-----CCc
Q 047983          147 PEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG------------------L-----KDW  203 (233)
Q Consensus       147 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~------------------~-----~~~  203 (233)
                      +.++...|         ..++...     .+.+.+.+.|.++||.+.++....                  .     .+.
T Consensus       278 ~~~~~~~~---------~~~~~~~-----~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (374)
T 3uwc_A          278 REGVYHVF---------HIYVLRV-----KYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAV  343 (374)
T ss_dssp             CTTEECCC---------SSEEEEE-----TTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHE
T ss_pred             CCCCceee---------EEEEEEc-----CCHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCE
Confidence            44444444         2222211     145556666778899999975110                  0     267


Q ss_pred             EEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          204 LRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       204 ~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                      +|+++..  ++++++++++.|++++++.
T Consensus       344 lrl~~~~~~t~edi~~~~~~l~~~l~~~  371 (374)
T 3uwc_A          344 ITLPAHPYLTEEEINYIIKKVREFYLEK  371 (374)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             EEccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence            9998885  8999999999999998754

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.38  E-value=1e-12  Score=116.86  Aligned_cols=183  Identities=10%  Similarity=0.052  Sum_probs=103.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++|+||+|.+|.+.|. ...+...+.. ..+.+.||||.+ ++|   ||++ ++  .+.   ..    
T Consensus       282 ~~l~~l~~~~g~lli~DEv~~g~g~~g~-~~~~~~~gv~-~~~Di~t~sK~~-l~G---G~~~-~~--~~~---~~----  345 (472)
T 1ohv_A          282 RKLRDISRKHGCAFLVDEVQTGGGSTGK-FWAHEHWGLD-DPADVMTFSKKM-MTG---GFFH-KE--EFR---PN----  345 (472)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGCCS-SCCSEEEECGGG-SSE---EEEE-CG--GGS---CS----
T ss_pred             HHHHHHHHHhCCEEEEeCcccCCCCCCC-chhccccCCC-CCCCEEEEcccc-ccC---CccC-ch--hhc---cc----
Confidence            3789999999999999999998766553 1122222211 012245899985 456   8876 43  221   11    


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcC----CC-cccccCCCccEEEEE
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEI----PC-ITCPKKPEGSMFVMY  155 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~-~~~~~~~~~g~~~~~  155 (233)
                           .......+++.++..++++++.+ +. ..+  ....+.++++++++.+.|+++    +. +.. ..+. |.+++ 
T Consensus       346 -----~~~~~~~T~~~~~~~~aaa~aal-~~-~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~-~~~~-g~~~~-  413 (472)
T 1ohv_A          346 -----APYRIFNTWLGDPSKNLLLAEVI-NI-IKR--EDLLSNAAHAGKVLLTGLLDLQARYPQFISR-VRGR-GTFCS-  413 (472)
T ss_dssp             -----SSSSSCCSSSSCHHHHHHHHHHH-HH-HHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEE-EEEE-TTEEE-
T ss_pred             -----ccccccCccCccHHHHHHHHHHH-HH-HHh--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEe-ecCC-ceEEE-
Confidence                 11112223333333333344333 11 111  234566666666666666543    32 221 3455 44455 


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                              +.++...     +...++.+++ ++||.+.|+.    .+++|++++  .+++++++++++|.+++++.
T Consensus       414 --------~~~~~~~-----~~~~~~~~l~-~~Gv~~~~~g----~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~  471 (472)
T 1ohv_A          414 --------FDTPDES-----IRNKLISIAR-NKGVMLGGCG----DKSIRFRPTLVFRDHHAHLFLNIFSDILADF  471 (472)
T ss_dssp             --------EECSSHH-----HHHHHHHHHH-HTTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             --------EEeCChh-----HHHHHHHHHH-HCCeEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence                    3332110     1334555555 6899999852    479999666  48999999999999988653

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.36  E-value=1.8e-11  Score=105.50  Aligned_cols=200  Identities=12%  Similarity=0.082  Sum_probs=115.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++|++||+++|+|++++ .   + .+..+..+   +..+++.|++|.++.+ ..+|++++++  .+++.+.-....+
T Consensus       159 ~i~~~~~~~~~~li~D~~~~-g---~-~~~~~~~~---~~d~~~~s~~K~l~~~-~g~g~~~~~~--~~~~~l~~~~~~~  227 (379)
T 3ke3_A          159 ALSEAVHSVGGLLVIDCIAS-G---C-VWLDMKEL---GIDVLISAPQKGWSST-PCAGLVMLSA--AAIKKVESTESNC  227 (379)
T ss_dssp             HHHHHHHHTTCEEEEECTTC-T---T-CCCCHHHH---TCSEEEECTTTTTCSC-CCEEEEEECH--HHHHHHHTCCCSC
T ss_pred             HHHHHHHHcCCEEEEEeccc-C---C-cccccccc---CCCEEEecchhhcCCC-CceEEEEECH--HHHHhhhcCCCCc
Confidence            68999999999999999976 2   2 22222222   2337889999986543 3589999987  4443211000000


Q ss_pred             hhh-HHhhh----hhhh----hccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC--c
Q 047983           82 ISL-NMRMD----DYLL----LSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE--G  149 (233)
Q Consensus        82 ~~~-~~~~~----~~~~----~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~  149 (233)
                      ... .....    .+..    +...++... .++.+.++.-.++-+++.+++++++++++.+.|+++ ++..+.++.  +
T Consensus       228 ~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~  306 (379)
T 3ke3_A          228 FSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEA  306 (379)
T ss_dssp             STTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBC
T ss_pred             eeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccC
Confidence            000 00000    0000    111223322 333333321112226788888999999999999887 444322221  2


Q ss_pred             cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-----CCcEEEEeec--CHHHHHHHHHHH
Q 047983          150 SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-----KDWLRITFAV--EPSAFEIGLGRM  222 (233)
Q Consensus       150 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----~~~~Rl~~~~--~~~~l~~~~~~l  222 (233)
                      +....         +..+        +......+.|.++||.+.||..+..     .+++|+++..  ++++++++++.|
T Consensus       307 ~~i~~---------~~~~--------~~~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l  369 (379)
T 3ke3_A          307 PGVVV---------SYTE--------RDDMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERF  369 (379)
T ss_dssp             SSEEE---------EECS--------CHHHHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHH
T ss_pred             ceEEE---------EccC--------CcchHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHH
Confidence            22222         1121        1111124567788999999886542     5799999974  788999999999


Q ss_pred             HHHHHHHh
Q 047983          223 KAFYYRHA  230 (233)
Q Consensus       223 ~~~l~~~~  230 (233)
                      .+++++..
T Consensus       370 ~~~l~~~~  377 (379)
T 3ke3_A          370 EKALDEVL  377 (379)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99998765

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.35  E-value=1.5e-11  Score=106.56  Aligned_cols=58  Identities=19%  Similarity=0.179  Sum_probs=47.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceE-EEEEecC
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSD   66 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~-G~~~~~~   66 (233)
                      ++|+++|++||+++|+||+|..+.+..    ++.    .+..+++.|+||.++++|.|+ ||+++++
T Consensus       164 ~~i~~~~~~~~~~livD~~~~~~~~~~----~~~----~~~di~~~S~sK~~~~~~~~~~G~v~~~~  222 (389)
T 3acz_A          164 KGIAVVCHERGARLVVDATFTSPCFLK----PLE----LGADIALHSVSKYINGHGDVIGGVSSAKT  222 (389)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTCTTTCC----GGG----TTCSEEEEETTTTTTCSSCCCCEEEEESS
T ss_pred             HHHHHHHHHcCCEEEEECCCccccccC----ccc----cCCeEEEECChhhccCCCCceeEEEEECc
Confidence            378999999999999999999865421    221    245589999999999999998 9999986

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.35  E-value=4.2e-12  Score=112.25  Aligned_cols=197  Identities=7%  Similarity=-0.075  Sum_probs=115.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccC-CCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWI-VPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++|+|++|+..    ..+..+..+   +..+++.|++|.++ .|+ ++|++.+++  .+++.+.-. .
T Consensus       234 ~~i~~la~~~g~~vi~D~a~~~g----~~~~~~~~~---~~D~~~~s~~K~l~~gp~-~~g~l~~~~--~~~~~~~~~-~  302 (465)
T 3e9k_A          234 PAITKAGQAKGCYVGFDLAHAVG----NVELYLHDW---GVDFACWCSYKYLNAGAG-GIAGAFIHE--KHAHTIKPA-L  302 (465)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTT----TSCCCHHHH---TCCEEEECSSSTTCCCTT-CCCEEEECG--GGTTTSCCS-S
T ss_pred             HHHHHHHHHcCCEEEEEhhhhcC----CcCCchhhc---CCCEEEECcccccccCCC-ceEEEEEcH--HHHhhcCCc-c
Confidence            37899999999999999999852    222222222   33488899999974 444 899999877  444321100 0


Q ss_pred             hhhhhH---Hhhh---------hhhhhcc-CcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcC-------
Q 047983           80 HSISLN---MRMD---------DYLLLSE-SVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEI-------  138 (233)
Q Consensus        80 ~~~~~~---~~~~---------~~~~~~~-~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------  138 (233)
                      ..-...   ..+.         ....+.. +++... .++.+.++.-.+..++++++.+.++++++.+.|+++       
T Consensus       303 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  382 (465)
T 3e9k_A          303 VGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAA  382 (465)
T ss_dssp             CCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred             cCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            000000   0000         0000111 122222 333333221122237888999999999999999873       


Q ss_pred             ---CCcccccCCC----ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--
Q 047983          139 ---PCITCPKKPE----GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--  209 (233)
Q Consensus       139 ---~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--  209 (233)
                         +++.. ..|.    .|.++|         +.++.        +...+.+.|.++||.+.    +...+++|++++  
T Consensus       383 ~~~~g~~~-~~p~~~~~~g~~~~---------~~~~~--------~~~~l~~~L~~~Gi~v~----~~~~~~iRis~~~~  440 (465)
T 3e9k_A          383 TKKPVVNI-ITPSHVEERGCQLT---------ITFSV--------PNKDVFQELEKRGVVCD----KRNPNGIRVAPVPL  440 (465)
T ss_dssp             ----CEEE-CSCSSGGGBCSCEE---------EEECC--------TTCCHHHHHHTTTEECE----EETTTEEEEBCCTT
T ss_pred             cCCCCeEE-eCCCCHhhcccEEE---------EEecC--------CHHHHHHHHHHCCEEEe----cCCCCEEEEeCccc
Confidence               56654 3443    356666         44431        22233444567799986    334689999983  


Q ss_pred             -cCHHHHHHHHHHHHHHHHHHh
Q 047983          210 -VEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       210 -~~~~~l~~~~~~l~~~l~~~~  230 (233)
                       .+.++++++++.|.+++++..
T Consensus       441 ~~t~edi~~~~~~l~~~l~~~~  462 (465)
T 3e9k_A          441 YNSFHDVYKFTNLLTSILDSAE  462 (465)
T ss_dssp             TCCHHHHHHHHHHHHHHHTC--
T ss_pred             CCCHHHHHHHHHHHHHHHHhcc
Confidence             289999999999999887543

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.34  E-value=3.7e-12  Score=112.44  Aligned_cols=181  Identities=8%  Similarity=0.009  Sum_probs=101.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCc-cccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGH-LVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++|+||+|+. +.|.+. +.+....+. +  +++.|+||.+ .++.++||+++++  .+++    .  
T Consensus       165 ~~I~~l~~~~~~~livDea~~~~~~f~~~-~~~~~~~g~-D--i~~~S~~K~l-~~~~g~g~l~~~~--~~i~----~--  231 (446)
T 2x3l_A          165 EEVIKSLHQLNIPVLIDEAHGAHFGLQGF-PDSTLNYQA-D--YVVQSFHKTL-PALTMGSVLYIHK--NAPY----R--  231 (446)
T ss_dssp             HHHHHHHHHTTCCEEEECTTCTTTTSTTS-CCCGGGGTC-S--EEEECHHHHS-SSCTTCEEEEEET--TCTT----H--
T ss_pred             HHHHHHHHhcCCeEEEcchhhhhhccCCC-CCChHHcCC-C--EEEECCcccc-ccccccEEEEEcC--CcCC----H--
Confidence            3789999999999999999996 445543 333333333 2  8899999952 2334589999987  3332    1  


Q ss_pred             hhhhhHHhhhhhhh-h-ccCcchHH-HHHHHHhhhcHHHH-HHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEE
Q 047983           80 HSISLNMRMDDYLL-L-SESVYTTV-GAVPQILEKTEEEF-FSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        80 ~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~  155 (233)
                            ..+..... + +.+++... +++...+. ....+ .++..+..++.++.+.+.     ++.. ..+.++.++| 
T Consensus       232 ------~~~~~~~~~~~~~s~~~~~~aal~~a~~-~l~~~g~~~~~~~~~~l~~~l~~~-----g~~~-~~~~~~~~l~-  297 (446)
T 2x3l_A          232 ------ENIIEYLSYFQTSSPSYLIMASLESAAQ-FYKTYDSTLFFAKRAQLIECLENK-----GFEM-LQVDDPLKLL-  297 (446)
T ss_dssp             ------HHHHHHHHHHSCSSCCHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHH-----TCEE-EECSSTTEEE-
T ss_pred             ------HHHHHHHHHHcCCCchHHHHHHHHHHHH-HHHHhCHHHHHHHHHHHHHHHHHc-----CCEE-CcCCCCeEEE-
Confidence                  22222111 1 12222222 22222111 01110 111334444444444444     3332 3344455688 


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEE-CCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVL-PGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                              +.++     +. +..+ +.+.|.++||.+. +|.     +++|++++.  +++++ ++++.|.++++++
T Consensus       298 --------i~~~-----~~-~~~~-l~~~L~~~GI~v~~~g~-----~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~  353 (446)
T 2x3l_A          298 --------IKYE-----GF-TGHD-IQNWFMNAHIYLELADD-----YQALAILPLWHHDDTY-LFDSLLRKIEDMI  353 (446)
T ss_dssp             --------EECT-----TS-CHHH-HHHHHHHTTEEESEECS-----SCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred             --------EEeC-----Cc-CHHH-HHHHHHHCCCEEEecCC-----CEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence                    4443     12 2444 4455556699997 543     789999985  77778 8899988887654

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.34  E-value=2.1e-11  Score=109.01  Aligned_cols=208  Identities=13%  Similarity=0.046  Sum_probs=119.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++++|++|+.+.+..+.. ..+..+.. .. +++.|.+|.++.| .++|+++++++ .+++.  ....
T Consensus       265 ~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~-~D-~i~~~~hK~~~~p-~~~g~l~~~~~-~~~~~--~~~~  338 (504)
T 2okj_A          265 QEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIER-AN-SVTWNPHKMMGVL-LQCSAILVKEK-GILQG--CNQM  338 (504)
T ss_dssp             HHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGG-CS-EEEECTTSTTCCC-SCCEEEEESST-THHHH--HHCC
T ss_pred             HHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCccc-CC-EEEECchhhcCCC-cceEEEEEECH-HHHHH--HhcC
Confidence            379999999999999999999887653322 22222211 12 5677899987766 79999999874 23211  0000


Q ss_pred             hhhhh--HHh-h---hhhhhh----ccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc--
Q 047983           80 HSISL--NMR-M---DDYLLL----SESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPK--  145 (233)
Q Consensus        80 ~~~~~--~~~-~---~~~~~~----~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--  145 (233)
                      ....+  ... .   ..+...    +....+..  .++..+    ..+.+++..+...++++++.+.|++++++....  
T Consensus       339 ~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~l----g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~  414 (504)
T 2okj_A          339 CAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK----GTVGFENQINKCLELAEYLYAKIKNREEFEMVFNG  414 (504)
T ss_dssp             CCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSS
T ss_pred             CCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence            00000  000 0   000000    00011111  222222    345677888889999999999999887776533  


Q ss_pred             CCCccEEEEEecCCCcccccccccccCCCC----------ChHHHHHHHHhccCEEEECCcccCC-CCcEEEEee---cC
Q 047983          146 KPEGSMFVMYCGSEDKCLLKLNYSLLEGIN----------SDTEFALKLAKEESIIVLPGITVGL-KDWLRITFA---VE  211 (233)
Q Consensus       146 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~Rl~~~---~~  211 (233)
                      .|..+++++         ...+... .+..          .....+.+.|.++|+++..+..+.. .+++|++++   .+
T Consensus       415 ~p~~~~v~f---------~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t  484 (504)
T 2okj_A          415 EPEHTNVCF---------WYIPQSL-RGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAAT  484 (504)
T ss_dssp             CCSSSCEEE---------EECCGGG-SSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCC
T ss_pred             CCCeEEEEE---------EEeCccc-cccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCC
Confidence            477787776         2112100 0000          0123344455566865444334443 368999997   38


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 047983          212 PSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       212 ~~~l~~~~~~l~~~l~~  228 (233)
                      +++++.+++.|++++++
T Consensus       485 ~edi~~~~~~l~~~~~~  501 (504)
T 2okj_A          485 QSDIDFLIEEIERLGQD  501 (504)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999887754

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.33  E-value=8.6e-12  Score=108.64  Aligned_cols=58  Identities=16%  Similarity=0.190  Sum_probs=46.3

Q ss_pred             ChHHHHHHHcC-cEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecC
Q 047983            1 FCIEETTKKLG-IMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSD   66 (233)
Q Consensus         1 ~~i~~l~~~~~-~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~   66 (233)
                      ++|+++|+++| +++|+||+|..+.+..    ++.    .+..+++.|+||.++++| .|+||+++++
T Consensus       171 ~~i~~la~~~g~~~livD~~~~~~~~~~----~~~----~~~div~~S~sK~~~g~~~~~~G~v~~~~  230 (403)
T 3cog_A          171 EGCAHIVHKHGDIILVVDNTFMSPYFQR----PLA----LGADISMYSATKYMNGHSDVVMGLVSVNC  230 (403)
T ss_dssp             HHHHHHHTSSSCCEEEEECTTTCTTTCC----TTT----TTCSEEEEETTTTTTCSSCCCCEEEEECC
T ss_pred             HHHHHHHHHcCCCEEEEECCCcccccCC----ccc----cCCeEEEEcChhhccCCCCCeEEEEEECc
Confidence            37899999999 9999999999876431    221    245699999999988876 5899999964

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.32  E-value=5.6e-11  Score=104.72  Aligned_cols=207  Identities=14%  Similarity=-0.004  Sum_probs=117.5

Q ss_pred             ChHHHHHHHc------CcEEEEccccCcccc---CCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccc
Q 047983            1 FCIEETTKKL------GIMVIADEVYGHLVF---GNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL   71 (233)
Q Consensus         1 ~~i~~l~~~~------~~~lI~De~y~~~~~---~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~   71 (233)
                      ++|.++|+++      |+++++|++|..+..   .+.....   +....-.++..|.+| |+++|+++||+++++...+.
T Consensus       207 ~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~hK-~~~~~~~~G~~~~~~~~~~~  282 (452)
T 2dgk_A          207 QPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWD---FRLPRVKSISASGHK-FGLAPLGCGWVIWRDEEALP  282 (452)
T ss_dssp             HHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS---TTSTTEEEEEEETTT-TTCCCSSCEEEEESSGGGSC
T ss_pred             HHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhh---cCCCCCcEEEECccc-ccCCCCCeEEEEEcCHHHHH
Confidence            4789999996      999999999998753   2221111   111122356678899 58899999999997631111


Q ss_pred             cccchhhhhhhhhHHhhh-hhhh--hccCcch-HHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-
Q 047983           72 QDLGVAFFHSISLNMRMD-DYLL--LSESVYT-TVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKK-  146 (233)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-  146 (233)
                      +.+...  .     ..+. .+..  ...+.+. ...++...+..-..+.+++..+.+.++++++.+.|++++++....+ 
T Consensus       283 ~~~~~~--~-----~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~  355 (452)
T 2dgk_A          283 QELVFN--V-----DYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTG  355 (452)
T ss_dssp             GGGCEE--E-----CCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred             HHhccC--c-----cccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCC
Confidence            211000  0     0000 0000  1111111 2222211122223456788889999999999999999876664322 


Q ss_pred             ---CCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCc---ccCCCCcEEEEeec--CHHHHHHH
Q 047983          147 ---PEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGI---TVGLKDWLRITFAV--EPSAFEIG  218 (233)
Q Consensus       147 ---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~---~f~~~~~~Rl~~~~--~~~~l~~~  218 (233)
                         +..+++++          +++.......  +...+.+.|.++||.+....   ......++|+++..  ++++++..
T Consensus       356 ~~~~~~~~v~f----------~~~~~~~~~~--~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~l  423 (452)
T 2dgk_A          356 RPDEGIPAVCF----------KLKDGEDPGY--TLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELL  423 (452)
T ss_dssp             CTTTBSSEEEE----------EECTTCCCSC--CHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHH
T ss_pred             CCCCCeEEEEE----------EecCcccccC--CHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHH
Confidence               33444443          2321100001  33445555667798654211   11124589999996  68899999


Q ss_pred             HHHHHHHHHHHh
Q 047983          219 LGRMKAFYYRHA  230 (233)
Q Consensus       219 ~~~l~~~l~~~~  230 (233)
                      ++.|++++++..
T Consensus       424 i~~l~~~~~~~~  435 (452)
T 2dgk_A          424 LEDYKASLKYLS  435 (452)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999998887664

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.31  E-value=4.3e-11  Score=104.28  Aligned_cols=59  Identities=19%  Similarity=0.182  Sum_probs=47.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecC
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD   66 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~   66 (233)
                      ++|+++|++||+++|+||+|..+.+..   .+.    ..+..+++.|+||.++.||.|+||+++.+
T Consensus       160 ~~i~~l~~~~~~~li~D~~~~~~~~~~---~~~----~~~~di~~~S~~K~~~~~~~~~G~~~~~~  218 (412)
T 2cb1_A          160 EALATLAEEAGVALVVDNTFGAAGALC---RPL----AWGAHVVVESLTKWASGHGSVLGGAVLSR  218 (412)
T ss_dssp             HHHHHHHHHHTCEEEEECGGGTTTTSC---CGG----GGTCSEEEEETTTTTTCSSCCCCEEEEEC
T ss_pred             HHHHHHHHHcCCEEEEECCCccccccC---Ccc----ccCCeEEEECCcccccCCCCcEEEEEEec
Confidence            378999999999999999999862111   111    12456999999999999999999998876

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.31  E-value=2.3e-11  Score=107.36  Aligned_cols=183  Identities=12%  Similarity=0.031  Sum_probs=106.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++|+|++|......    .++ .+   ...+++.|+||.++..| .|+||+++++  +++        
T Consensus       220 ~~I~~la~~~g~~livD~a~~~~~~~----~~~-~~---g~Div~~S~sK~~gg~gd~~~G~l~~~~--~l~--------  281 (445)
T 1qgn_A          220 ELVSKLCHEKGALVCIDGTFATPLNQ----KAL-AL---GADLVLHSATKFLGGHNDVLAGCISGPL--KLV--------  281 (445)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTCTTTC----CTT-TT---TCSEEEECTTTTTTCSSSCCCEEEEECH--HHH--------
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccC----Ccc-cc---CCEEEEECCcccccccccceEEEEEECH--HHH--------
Confidence            37899999999999999999864321    111 12   33488999999988766 5899999987  343        


Q ss_pred             hhhhhHHhhhhhh-hhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC----------
Q 047983           80 HSISLNMRMDDYL-LLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKP----------  147 (233)
Q Consensus        80 ~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----------  147 (233)
                            ..+.... .++...++.. .....-+     +.+....+...++++.+.+.|++.+.+.....|          
T Consensus       282 ------~~l~~~~~~~g~~~~~~~a~~~~~~l-----~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~  350 (445)
T 1qgn_A          282 ------SEIRNLHHILGGALNPNAAYLIIRGM-----KTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHI  350 (445)
T ss_dssp             ------HHHHHHHHHHCCCCCHHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHH
T ss_pred             ------HHHHHHHHHhCCCCCHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHH
Confidence                  2222221 1222223322 1111111     223444566677788888999887654211122          


Q ss_pred             ------CccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC----------------------
Q 047983          148 ------EGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG----------------------  199 (233)
Q Consensus       148 ------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~----------------------  199 (233)
                            ..|..++         +.++-.     .++...+...|+..++.+..|+.+.                      
T Consensus       351 ~~~~~~g~g~ivs---------f~l~~~-----~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g  416 (445)
T 1qgn_A          351 AKKQMTGFGGAVS---------FEVDGD-----LLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYG  416 (445)
T ss_dssp             HHHHCSCCCSEEE---------EEESSC-----HHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTT
T ss_pred             HHHhccCCCcEEE---------EEECCC-----HHHHHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcC
Confidence                  1244455         334310     0123344444544577777776431                      


Q ss_pred             C-CCcEEEEeecCHHHHHHHHHHHHHHHHH
Q 047983          200 L-KDWLRITFAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       200 ~-~~~~Rl~~~~~~~~l~~~~~~l~~~l~~  228 (233)
                      . ++.+|+|++.  |+++.+++.|.++++.
T Consensus       417 ~~~~~iRlSvG~--Edid~li~~L~~al~~  444 (445)
T 1qgn_A          417 IMDNLVRFSFGV--EDFDDLKADILQALDS  444 (445)
T ss_dssp             CCSSEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecc--CCHHHHHHHHHHHHhh
Confidence            1 4789999994  3467777777777653

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.31  E-value=3e-11  Score=106.01  Aligned_cols=194  Identities=16%  Similarity=0.140  Sum_probs=110.2

Q ss_pred             ChHHHHHHHcCcEEEEc---cccCccccCCCccccccccCCccCEEEEccCcccc----CCCCceEEEEEecCCCccccc
Q 047983            1 FCIEETTKKLGIMVIAD---EVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRW----IVPGWRLGWLVTSDPNGILQD   73 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~D---e~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~----~~~G~R~G~~~~~~~~~~~~~   73 (233)
                      ++|+++|+++|+++|+|   .+|+.+.      .+ ..++.  . +++.| +|.|    ++.|.|+||+++++  .+++.
T Consensus       215 ~~i~~la~~~g~~vivd~d~~a~g~~~------~~-~~~g~--D-~~~~s-~kk~~~~~~~~Gp~~G~l~~~~--~~~~~  281 (438)
T 1wyu_A          215 GPFAEAAHGAGALFVAVADPLSLGVLK------PP-GAYGA--D-IAVGD-GQSLGLPMGFGGPHFGFLATKK--AFVRQ  281 (438)
T ss_dssp             HHHHHHHHHTTCEEEEECCTTGGGTBC------CH-HHHTC--S-EEEEE-CTTTTCCCGGGCSCCEEEEECG--GGGGG
T ss_pred             HHHHHHHHHcCCEEEEEechhhccCcC------CC-ccCCC--C-EEEEC-CcccCCCccCCCCCeeEEEEcH--HHHHh
Confidence            37899999999999955   2243321      11 11222  2 44545 5654    35577999999987  45443


Q ss_pred             cchhhhhh--h--hh--------H---Hhhh-hhhhhccCcchHHHHHHH--HhhhcHHHHHHHHHHHHHHHHHHHHHHh
Q 047983           74 LGVAFFHS--I--SL--------N---MRMD-DYLLLSESVYTTVGAVPQ--ILEKTEEEFFSKITDILREAADICCDRL  135 (233)
Q Consensus        74 ~~~~~~~~--~--~~--------~---~~~~-~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~l~~~L  135 (233)
                      +... .+.  .  ..        .   ...+ ...+.+.....+..++.+  ++.....+.++++.+.+.++++++.+.|
T Consensus       282 l~~~-~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L  360 (438)
T 1wyu_A          282 LPGR-LVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALL  360 (438)
T ss_dssp             CCSC-CEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCc-eeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence            2100 000  0  00        0   0000 001111111222222222  1322334457888999999999999999


Q ss_pred             hcCCCcccccCCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEE--ECCcccCCCCcEEEEeec--C
Q 047983          136 KEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIV--LPGITVGLKDWLRITFAV--E  211 (233)
Q Consensus       136 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v--~pg~~f~~~~~~Rl~~~~--~  211 (233)
                      ++++++.. ..+. .+|.+         +.+..+    . +..++..+++ ++||.+  .++..|+ .+++|+|+..  +
T Consensus       361 ~~~~g~~~-~~~~-~~~~~---------~~~~~~----~-~~~~~~~~L~-~~gi~v~~~~~~~~~-~~~lRis~~~~~t  422 (438)
T 1wyu_A          361 LEVPGVRP-FTPK-PFFNE---------FALALP----K-DPEAVRRALA-ERGFHGATPVPREYG-ENLALFAATELHE  422 (438)
T ss_dssp             TTSTTCEE-CSCS-SBCSE---------EEEECS----S-CHHHHHHHHH-HTTCCCCEECCTTSC-SSEEEEECCTTCC
T ss_pred             hcCCCeEE-CCCC-CeEEE---------EEEeCC----C-CHHHHHHHHH-HCCceeccccccccC-CCeEEEEecccCC
Confidence            99877764 3332 44443         223221    1 2455555554 669999  7776664 6899999994  8


Q ss_pred             HHHHHHHHHHHHHHH
Q 047983          212 PSAFEIGLGRMKAFY  226 (233)
Q Consensus       212 ~~~l~~~~~~l~~~l  226 (233)
                      .++++++++.|++++
T Consensus       423 ~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          423 EEDLLALREALKEVL  437 (438)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            889999999988764

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.30  E-value=3.1e-11  Score=104.71  Aligned_cols=182  Identities=15%  Similarity=0.034  Sum_probs=105.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++|+||+|.......    ++ .+   ...+++.|+||.++.+| .|.||+++++. .+.        
T Consensus       171 ~~i~~la~~~g~~li~D~~~~~~~~~~----~~-~~---~~di~~~S~sK~lg~~g~~~~G~v~~~~~-~~~--------  233 (392)
T 3qhx_A          171 AGIAQLGADSSAKVLVDNTFASPALQQ----PL-SL---GADVVLHSTTKYIGGHSDVVGGALVTNDE-ELD--------  233 (392)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTCTTTCC----GG-GG---TCSEEEEETTTTTTCSSCCCCEEEEESCH-HHH--------
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCC----hH-Hh---CCcEEEEcCccccCCCCCceEEEEEECcH-HHH--------
Confidence            378999999999999999998643221    11 12   33488999999999887 89999999852 232        


Q ss_pred             hhhhhHHhhhhhhh-hccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC------C---
Q 047983           80 HSISLNMRMDDYLL-LSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKP------E---  148 (233)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------~---  148 (233)
                            ..+..... .+...++.. .+....++     .+....+...++++.+.+.|++.+.+.....|      .   
T Consensus       234 ------~~l~~~~~~~g~~~~~~~~~~~~~~l~-----~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~  302 (392)
T 3qhx_A          234 ------QSFAFLQNGAGAVPGPFDAYLTMRGLK-----TLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAV  302 (392)
T ss_dssp             ------HHHHHHHHHHCCCCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHH
T ss_pred             ------HHHHHHHHhcCCCCCHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHH
Confidence                  22222211 222333332 22222221     13344566677888888888776543211111      1   


Q ss_pred             -------ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC--------------------CC
Q 047983          149 -------GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG--------------------LK  201 (233)
Q Consensus       149 -------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--------------------~~  201 (233)
                             .|..++         +.++-..     ...+.+...|+..|+.+..|+.++                    .+
T Consensus       303 ~~~~~~g~g~~~~---------~~l~~~~-----~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~  368 (392)
T 3qhx_A          303 AARQMRGFGGMVS---------VRMRAGR-----TAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPD  368 (392)
T ss_dssp             HHHHCSSCCSEEE---------EEETTCH-----HHHHHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCT
T ss_pred             HHHhCCCCceEEE---------EEeCCcH-----HHHHHHHHhCCCceECCCCCCCCceeeCcccccccccCHHHcCCCC
Confidence                   144455         4443210     134555566667788887777642                    14


Q ss_pred             CcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          202 DWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       202 ~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                      +.+|+|++.+  +.++.++.|.+.+
T Consensus       369 ~~iRlSvg~e--~~~~~i~~l~~al  391 (392)
T 3qhx_A          369 DLVRLSVGIE--DVADLLDDLKQAL  391 (392)
T ss_dssp             TEEEEECCSS--CHHHHHHHHHHHH
T ss_pred             CeEEEEeccC--CHHHHHHHHHHHh
Confidence            6799999863  3345555555543

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.29  E-value=3e-11  Score=104.83  Aligned_cols=112  Identities=12%  Similarity=-0.022  Sum_probs=70.6

Q ss_pred             ChHHHHHHHc----CcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceE-EEEEecCCCccccccc
Q 047983            1 FCIEETTKKL----GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDLG   75 (233)
Q Consensus         1 ~~i~~l~~~~----~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~-G~~~~~~~~~~~~~~~   75 (233)
                      ++|+++|+++    |+++|+||+|..+.+.  .   ...+   +..+++.|+||.++.+|+|+ ||++++++ .++    
T Consensus       158 ~~i~~la~~~~~~~~~~livD~a~~~~~~~--~---~~~~---~~di~~~S~sK~~g~~G~rigG~~~~~~~-~~~----  224 (393)
T 1n8p_A          158 QKVADLIKKHAAGQDVILVVDNTFLSPYIS--N---PLNF---GADIVVHSATKYINGHSDVVLGVLATNNK-PLY----  224 (393)
T ss_dssp             HHHHHHHHHHTTTTTCEEEEECTTTHHHHC--C---GGGG---TCSEEEEETTTTTTCSSCCCCEEEEESCH-HHH----
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCCccccccC--C---HHHc---CCeEEEEECcccccCCCCceeEEEEeCCH-HHH----
Confidence            3789999999    9999999999987653  1   1112   35599999999999999999 99998532 333    


Q ss_pred             hhhhhhhhhHHhhhhhhh-hccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047983           76 VAFFHSISLNMRMDDYLL-LSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC  140 (233)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  140 (233)
                                ..+..... .+...++.. .+....+     +.+....+...++++.+.+.|++.+.
T Consensus       225 ----------~~l~~~~~~~g~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~l~~~L~~~~~  276 (393)
T 1n8p_A          225 ----------ERLQFLQNAIGAIPSPFDAWLTHRGL-----KTLHLRVRQAALSANKIAEFLAADKE  276 (393)
T ss_dssp             ----------HHHHHHHHHHCCCCCHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred             ----------HHHHHHHHhcCCCCCHHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                      22222111 222222222 2111111     12344556667777788888876543

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.27  E-value=1.7e-11  Score=104.99  Aligned_cols=191  Identities=15%  Similarity=0.154  Sum_probs=107.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccc-cCCCccccccccCCccCEEEEccCc--cccCCCCceEEEEEecCCCccccccchh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLV-FGNTHFVPMGVFGSIVPVLTLGSIS--KRWIVPGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~s--K~~~~~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++|.++|++||+++|+||+|+... +++..   +... . +  +.+.|||  |.++.+| +.|++++++. .+.+.   +
T Consensus       141 ~~i~~l~~~~~~~li~D~a~~~g~~~~~~~---~~~~-~-d--~~~~S~~~~K~l~~~g-~gg~~~~~~~-~~~~~---~  208 (373)
T 3frk_A          141 DEIKRIAKKYNLKLIEDAAQAHGSLYKGMK---VGSL-G-D--AAGFSFYPAKNLGSLG-DGGAVVTNDK-DLAEK---I  208 (373)
T ss_dssp             HHHHHHHHHHTCEEEEECTTCTTCEETTEE---TTSS-S-S--EEEEECCTTSSSCCSS-SCEEEEESCH-HHHHH---H
T ss_pred             HHHHHHHHHcCCEEEEECCcccCCEECCEe---cccc-c-c--EEEEeCcCCCccCccc-eeEEEEeCCH-HHHHH---H
Confidence            378999999999999999998633 33221   1111 1 2  7778877  8765434 4789888762 23221   1


Q ss_pred             hhhhhhhHHhhhhhh----------hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC
Q 047983           78 FFHSISLNMRMDDYL----------LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKP  147 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  147 (233)
                              ..+....          ..+.......+++...    ..+.+++..+..+++.+++.+.|++++ +..+..+
T Consensus       209 --------~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~  275 (373)
T 3frk_A          209 --------KALSNYGSEKKYHHIYKGFNSRLDELQAGFLRV----KLKYLDKWNEERRKIAQKYIAGINNPN-VIIPVEA  275 (373)
T ss_dssp             --------HHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHH----HHHTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCC
T ss_pred             --------HHHHhcCcccCCccccccccCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhccCc-eEeccCC
Confidence                    1111100          0111112221222221    123345566777778888888888875 4432233


Q ss_pred             CccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-----------------------CCcE
Q 047983          148 EGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-----------------------KDWL  204 (233)
Q Consensus       148 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----------------------~~~~  204 (233)
                      .++...|         ..++...     .+.+.+.+.|.++||.+.++...+.                       ...+
T Consensus       276 ~~~~~~~---------~~~~~~~-----~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  341 (373)
T 3frk_A          276 DYAKHVW---------YTFVIRS-----EKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEIL  341 (373)
T ss_dssp             TTEECCC---------SSEEEEE-----SSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEE
T ss_pred             CCCceee---------EEEEEEe-----CCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEE
Confidence            3333333         2222211     1455666777788999987652110                       1569


Q ss_pred             EEEeec--CHHHHHHHHHHHHHHHHHHh
Q 047983          205 RITFAV--EPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       205 Rl~~~~--~~~~l~~~~~~l~~~l~~~~  230 (233)
                      |+++..  ++++++..++.|+++..++.
T Consensus       342 rl~~~~~~t~~di~~~~~~l~~~~~~~~  369 (373)
T 3frk_A          342 SIPIWYGMKNEEIEYVIDKINAWKLEHH  369 (373)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHTCC----
T ss_pred             EccCCCCCCHHHHHHHHHHHHHHhhhhc
Confidence            999986  89999999999988877664

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.25  E-value=3.1e-11  Score=104.05  Aligned_cols=189  Identities=12%  Similarity=0.032  Sum_probs=105.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccc-cCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLV-FGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++|+||+|+... +.+..   ...+.  +  +.+.||||..+++|.+.||+++++. .+.+.   +  
T Consensus       161 ~~i~~l~~~~~~~li~D~a~~~g~~~~~~~---~~~~~--d--i~~~S~s~~K~l~~g~gg~~~~~~~-~~~~~---~--  227 (391)
T 3dr4_A          161 DPILEVARRHNLLVIEDAAEAVGATYRGKK---SGSLG--D--CATFSFFGNAIITTGEGGMITTNDD-DLAAK---M--  227 (391)
T ss_dssp             HHHHHHHHHTTCEEEEECTTCTTCEETTEE---TTSSS--S--EEEEECBTTSSSCCBSCEEEEESCH-HHHHH---H--
T ss_pred             HHHHHHHHHcCCEEEEECcccccceECCee---ecccC--C--EEEEECCCCCcCCcCCeEEEEECCH-HHHHH---H--
Confidence            378999999999999999999633 33221   11111  2  6677877333445567899998862 23211   1  


Q ss_pred             hhhhhHHhhhhhh------------hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-
Q 047983           80 HSISLNMRMDDYL------------LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKK-  146 (233)
Q Consensus        80 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-  146 (233)
                            ..+....            ..+.......+++...    ..+.+++..+..+++.+++.+.|+++ ++..+.. 
T Consensus       228 ------~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~  296 (391)
T 3dr4_A          228 ------RLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLA----QLERVDEHLAARERVVGWYEQKLARL-GNRVTKPH  296 (391)
T ss_dssp             ------HHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHH----HHHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCC
T ss_pred             ------HHHHhcCCCCCCcccccccccccCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcC
Confidence                  1111100            0011112221222211    12344556677777888888888876 5443222 


Q ss_pred             -CC---cc-EEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcc-------c--------C-----CC
Q 047983          147 -PE---GS-MFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGIT-------V--------G-----LK  201 (233)
Q Consensus       147 -~~---~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~-------f--------~-----~~  201 (233)
                       +.   .+ +.++         +.++..  .+.  +.+.+.+.|.++||.+.+|..       |        +     ..
T Consensus       297 ~~~~~~~~~~~~~---------i~~~~~--~~~--~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  363 (391)
T 3dr4_A          297 VALTGRHVFWMYT---------VRLGEG--LST--TRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGV  363 (391)
T ss_dssp             CCTTSCCCCSSEE---------EEECSS--CSS--CHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHH
T ss_pred             CCCCCcceeEEEE---------EEECCc--cch--hHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHh
Confidence             11   22 2234         333321  012  455566667778999998741       0        0     03


Q ss_pred             CcEEEEeec--CHHHHHHHHHHHHHHH
Q 047983          202 DWLRITFAV--EPSAFEIGLGRMKAFY  226 (233)
Q Consensus       202 ~~~Rl~~~~--~~~~l~~~~~~l~~~l  226 (233)
                      ..+|+++..  ++++++.+++.|++++
T Consensus       364 ~~lrl~~~~~~t~edi~~~~~~l~~~l  390 (391)
T 3dr4_A          364 DGLNLPTHAGLTEADIDRVIAALDQVL  390 (391)
T ss_dssp             HEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred             CeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence            568998885  8899999999887653

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.22  E-value=3.2e-10  Score=101.44  Aligned_cols=209  Identities=13%  Similarity=-0.010  Sum_probs=119.3

Q ss_pred             ChHHHHHHHc------CcEEEEccccCcccc---CCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccc
Q 047983            1 FCIEETTKKL------GIMVIADEVYGHLVF---GNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL   71 (233)
Q Consensus         1 ~~i~~l~~~~------~~~lI~De~y~~~~~---~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~   71 (233)
                      ++|.++|+++      |+++++|++|..+..   .+.....+   ....-.++..|.+|. +.++.++||+++.+. ..+
T Consensus       222 ~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~---~~~~~D~v~~s~hK~-l~~p~g~G~~~~~~~-~~l  296 (502)
T 3hbx_A          222 KLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDF---RLPLVKSINVSGHKY-GLVYAGIGWVIWRNK-EDL  296 (502)
T ss_dssp             HHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCST---TSTTEEEEEEETTTT-TCCCSSCEEEEESSG-GGS
T ss_pred             HHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccccccc---CCCCceEEEECcccc-cCCCCCeEEEEEeCH-HHh
Confidence            4789999999      999999999997652   22211111   111223566788886 777889999998764 222


Q ss_pred             cccchhhhhhhhhHHhhhhhhhhccCcch-HHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-CCc
Q 047983           72 QDLGVAFFHSISLNMRMDDYLLLSESVYT-TVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKK-PEG  149 (233)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~  149 (233)
                      .+ .+. ....-+...... ..+..+.+. ...++...+..-..+.+.+..+...++++++.+.|++++++..+.. |..
T Consensus       297 ~~-~~~-~~~~yl~~~~~~-~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~  373 (502)
T 3hbx_A          297 PE-ELI-FHINYLGADQPT-FTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGV  373 (502)
T ss_dssp             CG-GGC-EEECSSSSCEEE-CCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSS
T ss_pred             hH-Hhc-cCcccccCCCCC-ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCc
Confidence            11 000 000000000000 001111111 2222222222223445677888888899999999999876765333 344


Q ss_pred             cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC---CCCcEEEEeec--CHHHHHHHHHHHHH
Q 047983          150 SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG---LKDWLRITFAV--EPSAFEIGLGRMKA  224 (233)
Q Consensus       150 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~---~~~~~Rl~~~~--~~~~l~~~~~~l~~  224 (233)
                      + ++.         ++++...  ..  +...+.+.|.++||.+.......   ...++|+++..  +.++++..++.|.+
T Consensus       374 ~-~v~---------f~~~~~~--~~--~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~  439 (502)
T 3hbx_A          374 P-LVA---------FSLKDSS--CH--TEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEK  439 (502)
T ss_dssp             S-EEE---------EEESSCS--SC--CHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             e-EEE---------EEecCCC--cC--CHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4 444         3333211  11  44455666778899874322211   13689999985  78899999999999


Q ss_pred             HHHHHhh
Q 047983          225 FYYRHAK  231 (233)
Q Consensus       225 ~l~~~~~  231 (233)
                      ++++..+
T Consensus       440 ~l~~l~~  446 (502)
T 3hbx_A          440 VMRELDE  446 (502)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            8887653

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.22  E-value=1.7e-10  Score=101.42  Aligned_cols=191  Identities=12%  Similarity=0.040  Sum_probs=106.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEec-CCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTS-DPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~-~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+|++|....+..    +. ..   ...+++.|+||.++.+|..+|.+++. +...+...-.+..+
T Consensus       187 ~~i~~la~~~g~~livD~a~~~~~~~~----~~-~~---g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l  258 (430)
T 3ri6_A          187 EALSKVVHAKGIPLVVDTTMTPPYLLE----AK-RL---GVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPY  258 (430)
T ss_dssp             HHHHHHHHTTTCCEEEECTTSCTTTCC----GG-GG---TCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHH
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCC----hH-Hc---CCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhh
Confidence            378999999999999999998643311    11 11   23488999999998887666666653 21112100000000


Q ss_pred             hh----hhhHHhhhh-h-hhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC-----
Q 047983           80 HS----ISLNMRMDD-Y-LLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE-----  148 (233)
Q Consensus        80 ~~----~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-----  148 (233)
                      ..    .....+.+. . ...+...++. .+...   ....+.+....++..+++..+.+.|++.|.+.....|.     
T Consensus       259 ~~~~g~~~~i~~~~~~~~~~~g~~~~~~-~a~l~---l~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p  334 (430)
T 3ri6_A          259 YAKAGPMAFLYKARKEVFQNLGPSLSPH-NAYLQ---SLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSP  334 (430)
T ss_dssp             HHHHGGGHHHHHHHHTHHHHHCCCCCHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTST
T ss_pred             hhhhchhhHHHHHHHHHHHhcCCCCCHH-HHHHH---HhhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCc
Confidence            00    000011111 1 1222222222 11111   12334556666777889999999998876654323333     


Q ss_pred             -----------ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC------------------
Q 047983          149 -----------GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG------------------  199 (233)
Q Consensus       149 -----------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~------------------  199 (233)
                                 ||+.+|         +.++..      .+...+...++..++.+.+|..++                  
T Consensus       335 ~~~~~~~~~g~Gg~~ls---------f~l~~~------~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~  399 (430)
T 3ri6_A          335 FYAIAKRQFRYAGSILT---------FELESK------EASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEER  399 (430)
T ss_dssp             THHHHHHHCSSCCSEEE---------EECSSH------HHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------
T ss_pred             cHHHHHHhCCCCceEEE---------EEECCH------HHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHH
Confidence                       665778         555411      144455555666677788887665                  


Q ss_pred             -----CCCcEEEEeec-CHHHHHHH
Q 047983          200 -----LKDWLRITFAV-EPSAFEIG  218 (233)
Q Consensus       200 -----~~~~~Rl~~~~-~~~~l~~~  218 (233)
                           .++++|+|++. +.+++.+.
T Consensus       400 ~~~g~~~~liRlsvG~E~~~dl~~d  424 (430)
T 3ri6_A          400 LKLEISPAMMRLSVGIEEIEDLKED  424 (430)
T ss_dssp             CGGGSCTTEEEEECCSSCHHHHHHH
T ss_pred             HhcCCCCCeEEEEeccCCHHHHHHH
Confidence                 15789999996 44444433

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.18  E-value=2.7e-10  Score=98.44  Aligned_cols=191  Identities=13%  Similarity=0.015  Sum_probs=105.6

Q ss_pred             ChHHHHHHHcCcEEEEccccC-ccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYG-HLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|+++|+++|+||+|. ++.+.+....++   .  +  +.+.|+||..+++|.|+||++++++ ++++.  +   
T Consensus       139 ~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~---~--~--~~~~s~s~~K~l~~~~~G~~~~~~~-~l~~~--l---  205 (394)
T 1o69_A          139 DEIVEICKENDIVLIEDAAEALGSFYKNKALGTF---G--E--FGVYSYNGNKIITTSGGGMLIGKNK-EKIEK--A---  205 (394)
T ss_dssp             HHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS---S--S--EEEEECCTTSSSCCSSCEEEEESCH-HHHHH--H---
T ss_pred             HHHHHHHHHcCCEEEEECcCcccceeCCcccccc---c--C--cEEEEEeCCccCCCCCceEEEECCH-HHHHH--H---
Confidence            378999999999999999999 566554321111   1  2  4556665444556789999999642 33321  1   


Q ss_pred             hhhhhHHhhhhhhhhc------------cCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC
Q 047983           80 HSISLNMRMDDYLLLS------------ESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKP  147 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  147 (233)
                            ..........            ...+....++ .+  .. .+++++..+.++++++++.+.|+++  +.. .++
T Consensus       206 ------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~-~l--~~-l~~l~~~~~~~~~~~~~l~~~L~~~--~~~-~~~  272 (394)
T 1o69_A          206 ------RFYSTQARENCLHYEHLDYGYNYRLSNVLGAI-GV--AQ-MEVLEQRVLKKREIYEWYKEFLGEY--FSF-LDE  272 (394)
T ss_dssp             ------HHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHH-HH--HH-HTTHHHHHHHHHHHHHHHHHHHTTT--EEC-CCC
T ss_pred             ------HHHHHhccccCccccccccCcccCcCHHHHHH-HH--HH-HHHHHHHHHHHHHHHHHHHHHhccc--ccc-cCC
Confidence                  1111111000            0011111111 11  01 2345667788899999999999876  332 222


Q ss_pred             C----ccE-EEEEecCCCcccccccccc-----------------cCCCCChHHHHHHHHhccCEEEECCccc---CC--
Q 047983          148 E----GSM-FVMYCGSEDKCLLKLNYSL-----------------LEGINSDTEFALKLAKEESIIVLPGITV---GL--  200 (233)
Q Consensus       148 ~----~g~-~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ll~~~gi~v~pg~~f---~~--  200 (233)
                      .    +++ .++         +.++...                 ..++  +.+.+.+.|.++||.+.+|...   .+  
T Consensus       273 ~~~~~~~~~~~~---------i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~~~gI~v~~~~~~~~~~p~~  341 (394)
T 1o69_A          273 LENSRSNRWLST---------ALINFDKNELNACQKDINISQKNITLHP--KISKLIEDLKNKQIETRPLWKAMHTQEVF  341 (394)
T ss_dssp             CTTEECCCSSEE---------EEESCCGGGSCCCCEEEECCCCCCCCCH--HHHHHHHHHHHTTCCCBCCCCCGGGCGGG
T ss_pred             CCCCcceeEEEE---------EEecchhhcccccccccccccccccccc--CHHHHHHHHHHcCCcccccCCccccchhh
Confidence            1    233 244         3333110                 0011  4555666677889999998421   00  


Q ss_pred             C---------------CcEEEEeec--CHHHHHHHHHHHHHHHHH
Q 047983          201 K---------------DWLRITFAV--EPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       201 ~---------------~~~Rl~~~~--~~~~l~~~~~~l~~~l~~  228 (233)
                      .               ..+|+....  ++++++..++.|++++..
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~  386 (394)
T 1o69_A          342 KGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA  386 (394)
T ss_dssp             TTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred             hccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHhc
Confidence            1               224444343  789999999999887654

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.16  E-value=2.6e-10  Score=99.25  Aligned_cols=115  Identities=14%  Similarity=0.098  Sum_probs=69.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEE--EEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGW--LVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~--~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++|++||+++|+||+|....+..    ++.    ....+++.|+||.++.+|.++|+  +++.++ ++.       
T Consensus       172 ~~i~~la~~~g~~livDe~~~~~~~~~----~~~----~g~div~~S~sK~l~g~g~~~gG~~vv~~~~-~~~-------  235 (400)
T 3nmy_A          172 AAIAVIARKHGLLTVVDNTFASPMLQR----PLS----LGADLVVHSATKYLNGHSDMVGGIAVVGDNA-ELA-------  235 (400)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTHHHHCC----GGG----GTCSEEEEETTTTTTCSSSCCCEEEEECSCH-HHH-------
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCC----hhh----cCCcEEEecCccccCCCCCcceeEEEEeCCH-HHH-------
Confidence            378999999999999999998543321    111    13448899999999999988877  444432 333       


Q ss_pred             hhhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 047983           79 FHSISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCIT  142 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  142 (233)
                             ..+..... .+...++... ...+   ..-+.+....+...++.+.+.+.|++.+.+.
T Consensus       236 -------~~l~~~~~~~g~~~~~~~a-~~~l---~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~  289 (400)
T 3nmy_A          236 -------EQMAFLQNSIGGVQGPFDS-FLAL---RGLKTLPLRMRAHCENALALAQWLETHPAIE  289 (400)
T ss_dssp             -------HHHHHHHHHHCCBCCHHHH-HHHH---HHHTTHHHHHHHHHHHHHHHHHHHTTCTTEE
T ss_pred             -------HHHHHHHHhcCCCCCHHHH-HHHH---HhHhHHHHHHHHHHHHHHHHHHHHHcCCCEe
Confidence                   22322212 2222333221 1111   1122344556677888888889998765543

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.15  E-value=1.8e-10  Score=101.96  Aligned_cols=197  Identities=17%  Similarity=0.123  Sum_probs=104.7

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++|++||+++|.||+...|..+|.-. ....++-.+.   +-+++|.. ..|+.+|.+++++  ++.+.   .    
T Consensus       251 ~lr~lc~~~gillI~DEV~tG~GRtG~~~-a~e~~gv~PD---ivt~gK~l-ggg~P~~av~~~~--~i~~~---~----  316 (456)
T 4atq_A          251 ALSEWAKEKGIVFIADEVQSGFCRTGEWF-AVDHEGVVPD---IITMAKGI-AGGLPLSAITGRA--DLLDA---V----  316 (456)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGTTCCCS---EEEECGGG-GTTSSCEEEEEEH--HHHTT---S----
T ss_pred             HHHHHHhhcCCceEecccccccCCccccc-cccccCCCCc---hhhhhhcc-cCcCCceeeEecH--HHHhc---c----
Confidence            68999999999999999999987776422 1211221122   44778984 5789999999987  44421   1    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHH--hhh-cHHHHHHHHHHHHHHHHHHHHHHhhc--CCCcccccCCCccEEEEEe
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQI--LEK-TEEEFFSKITDILREAADICCDRLKE--IPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~--~~~~~~~~~~~~g~~~~~~  156 (233)
                          .......+++.++...+++++.+  ++. +..+..+++-+++.++.+.+.+.+..  .+.+.. +... |.++-  
T Consensus       317 ----~~~~~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~-VRG~-Gl~~g--  388 (456)
T 4atq_A          317 ----HPGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGD-IRGR-GAMLA--  388 (456)
T ss_dssp             ----CTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEE-EEEE-TTEEE--
T ss_pred             ----cccCCCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEE-eeec-ceEEE--
Confidence                11112223333333322333333  111 11223333333444443333333211  011111 1222 44444  


Q ss_pred             cCCCccccccccccc-CCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLL-EGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                             +.+..+.. .+..+-...+...+.++||++.++..++  +.+|+...  .+++++++++++|.+.++.+
T Consensus       389 -------iel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g~~~--~~irl~PpL~it~~~id~~l~~l~~al~a~  455 (456)
T 4atq_A          389 -------IELVQPGSKEPNAELTKAVAAACLKEGVIILTCGTYG--NVIRLLPPLVISDELLIDGLEVLAAAIKAH  455 (456)
T ss_dssp             -------EEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEECTTS--CEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             -------EEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecCCCC--CEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence                   22221110 0000122345555668899998754333  67888654  48999999999999999865

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.15  E-value=1.6e-10  Score=98.94  Aligned_cols=184  Identities=15%  Similarity=0.120  Sum_probs=103.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCc-cccCCCccccccccCCccCEEEEccC--ccccCCCCceEEEEEecCCCccccccchh
Q 047983            1 FCIEETTKKLGIMVIADEVYGH-LVFGNTHFVPMGVFGSIVPVLTLGSI--SKRWIVPGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~-~~~~~~~~~~~~~~~~~~~~i~~~s~--sK~~~~~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++|.++|++||+++|+|++|+. ..+++.....   ++    .+.+.||  +|.++.+|. .||++++++ .+.      
T Consensus       140 ~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~---~~----di~~~Sf~~~K~l~~~g~-gg~~~~~~~-~l~------  204 (367)
T 3nyt_A          140 DAINAIASKYGIPVIEDAAQSFGASYKGKRSCN---LS----TVACTSFFPSAPLGCYGD-GGAIFTNDD-ELA------  204 (367)
T ss_dssp             HHHHHHHHHTTCCBEEECTTTTTCEETTEETTS---SS----SEEEEECCTTSSSCCSSC-CEEEEESCH-HHH------
T ss_pred             HHHHHHHHHcCCEEEEECccccCCeECCeeccC---CC----CEEEEECCCCCcCCCcCc-eeEEEeCCH-HHH------
Confidence            3789999999999999999985 3333322111   12    3778887  899887676 899998752 232      


Q ss_pred             hhhhhhhHHhhhhhhh-------------hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 047983           78 FFHSISLNMRMDDYLL-------------LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCP  144 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  144 (233)
                              .++.....             .+...+....+++..    ..+.+++..++.+++++++.+.|++++ +..+
T Consensus       205 --------~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~----~l~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~  271 (367)
T 3nyt_A          205 --------TAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLP----KLEIFEEEIALRQKVAAEYDLSLKQVG-IGTP  271 (367)
T ss_dssp             --------HHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHH----HHHTHHHHHHHHHHHHHHHHHHHHHTT-CCCC
T ss_pred             --------HHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhccCC-eecc
Confidence                    22221111             122222222222111    112234455666677778888887763 3322


Q ss_pred             cCCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcc--------cC-------C-----CCcE
Q 047983          145 KKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGIT--------VG-------L-----KDWL  204 (233)
Q Consensus       145 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~--------f~-------~-----~~~~  204 (233)
                      ..+.++...|         ..+....     ++.+.+.+.|+++||.+.++..        |.       .     ...+
T Consensus       272 ~~~~~~~~~~---------~~~~~~~-----~~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  337 (367)
T 3nyt_A          272 FIEVNNISVY---------AQYTVRM-----DNRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVM  337 (367)
T ss_dssp             CCCTTEECCC---------SSEEEEC-----SSHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEE
T ss_pred             CCCCCCceee---------EEEEEEe-----CCHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeE
Confidence            2333322222         1111110     1455666677788999987643        10       0     3468


Q ss_pred             EEEeec--CHHHHHHHHHHHHHHH
Q 047983          205 RITFAV--EPSAFEIGLGRMKAFY  226 (233)
Q Consensus       205 Rl~~~~--~~~~l~~~~~~l~~~l  226 (233)
                      |+++..  ++++++..++.++++=
T Consensus       338 ~lp~~~~~t~~~i~~v~~~~~~~~  361 (367)
T 3nyt_A          338 SLPMHPYLDTASIKIICAALTNLE  361 (367)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHC--
T ss_pred             EccCCCCCCHHHHHHHHHHHHHHh
Confidence            888886  7888888888887653

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.14  E-value=6.1e-10  Score=98.95  Aligned_cols=212  Identities=13%  Similarity=0.025  Sum_probs=118.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcccc-ccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVP-MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++++|.+|+...+..+.... +..+..  --.+..+.+|.++.| ..+|++.+.+. ..+.+  ....
T Consensus       254 ~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~--~Ds~~~~~hK~l~~p-~g~g~l~~~~~-~~l~~--~~~~  327 (475)
T 3k40_A          254 DECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIES--ADSFNFNPHKWMLVN-FDCSAMWLKDP-SWVVN--AFNV  327 (475)
T ss_dssp             HHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGG--CSEEEECHHHHSSCC-SSCEEEEESSG-GGC--------
T ss_pred             HHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCccc--CCEEEECchhccCCC-CceEEEEEeCH-HHHHH--HhcC
Confidence            37899999999999999999975443322211 112211  125678999975443 56788888774 22211  1100


Q ss_pred             hhhhhHHh----hhhhhhhc--cCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEE
Q 047983           80 HSISLNMR----MDDYLLLS--ESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFV  153 (233)
Q Consensus        80 ~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~  153 (233)
                      ....+...    ...+...+  .+.......+...+.....+.++++.++..++++++.+.|++++++..+.+|..++ +
T Consensus       328 ~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~i-v  406 (475)
T 3k40_A          328 DPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGL-V  406 (475)
T ss_dssp             ---------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTE-E
T ss_pred             CccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEE-E
Confidence            00000000    00000111  11111112222222222445678888999999999999999988877644444444 4


Q ss_pred             EEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec---CHHHHHHHHHHHHHHHHHHh
Q 047983          154 MYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV---EPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~---~~~~l~~~~~~l~~~l~~~~  230 (233)
                      +         ++++...    ....++..++.++.++.+.|+..+ ...++|+++..   +++++++++++|+++.++..
T Consensus       407 ~---------f~~~~~~----~~~~~l~~~L~~~g~~~~~~~~~~-g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~  472 (475)
T 3k40_A          407 C---------FRLKGSN----ERNEALLKRINGRGHIHLVPAKIK-DVYFLRMAICSRFTQSEDMEYSWKEVSAAADEME  472 (475)
T ss_dssp             E---------EEESSCH----HHHHHHHHHHHHHTSCBCEEEEET-TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             E---------EEeCCch----HHHHHHHHHHHhCCcEEEEeeEEC-CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            4         2332110    013455555555544555554433 35789999874   78999999999999998876


Q ss_pred             hcC
Q 047983          231 KKQ  233 (233)
Q Consensus       231 ~~~  233 (233)
                      +++
T Consensus       473 ~~~  475 (475)
T 3k40_A          473 QEQ  475 (475)
T ss_dssp             TCC
T ss_pred             ccC
Confidence            553

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.13  E-value=7.7e-10  Score=96.75  Aligned_cols=112  Identities=12%  Similarity=0.063  Sum_probs=69.2

Q ss_pred             ChHHHHHHH--cCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCce-EEEEEecCCCccccccchh
Q 047983            1 FCIEETTKK--LGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWR-LGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~--~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R-~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++|+++|++  +|+++|+|++|......    .++ .+   ...+++.|+||.++.+|.+ .||+++++  .+++     
T Consensus       187 ~~I~~la~~~~~g~~livD~a~a~~~~~----~p~-~~---g~Div~~S~sK~lg~~g~~~~G~l~~~~--~~~~-----  251 (415)
T 2fq6_A          187 PAIVAAVRSVVPDAIIMIDNTWAAGVLF----KAL-DF---GIDVSIQAATKYLVGHSDAMIGTAVCNA--RCWE-----  251 (415)
T ss_dssp             HHHHHHHHHHCTTCEEEEECTTTTTTSS----CGG-GG---TCSEEEEETTTTTTCSSSCCCEEEEECT--TTHH-----
T ss_pred             HHHHHHHHhhcCCCEEEEECCCcccccC----Ccc-cc---CCeEEEEeCccccCCCCCceEEEEEeCH--HHHH-----
Confidence            378999999  99999999999865321    122 12   3348899999999998866 59999876  3332     


Q ss_pred             hhhhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047983           78 FFHSISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC  140 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  140 (233)
                               .+..... .+...++. .+...+   ..-+.+....+...+++..+.+.|++.+.
T Consensus       252 ---------~l~~~~~~~G~~~~~~-~a~~~~---~~l~~l~~r~~~~~~n~~~l~~~L~~~~~  302 (415)
T 2fq6_A          252 ---------QLRENAYLMGQMVDAD-TAYITS---RGLRTLGVRLRQHHESSLKVAEWLAEHPQ  302 (415)
T ss_dssp             ---------HHHHHHHHTTCCCCHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             ---------HHHHHHHhcCCCCCHH-HHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence                     2222111 22222222 111111   12234555666677888888888877543

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.13  E-value=8.4e-11  Score=103.89  Aligned_cols=188  Identities=10%  Similarity=0.055  Sum_probs=109.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|+++|+++++|++|..+..+- .+.....+..... +++.|++|. +.+++++||++++++       .++   
T Consensus       251 ~~I~~la~~~g~~v~vD~A~~~~~~g~-~~~~~~~~~~~~D-~~~~s~hK~-~~~p~g~G~l~~~~~-------~~~---  317 (456)
T 2z67_A          251 VEIAKICENYDIPHIINGAYAIQNNYY-LEKLKKAFKYRVD-AVVSSSDKN-LLTPIGGGLVYSTDA-------EFI---  317 (456)
T ss_dssp             HHHHHHHHHHTCCEEEECTTTTTCHHH-HHHHHHHHTSCCS-EEEEEHHHH-HCCCSSCEEEEESCH-------HHH---
T ss_pred             HHHHHHHHHcCCcEEEECcchHHHHHh-hHHHHHhhCCCCC-EEEEcCCCC-cCCCCCeEEEEEcCH-------HHH---
Confidence            478999999999999999999775421 0111111111122 567899996 555689999999642       222   


Q ss_pred             hhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCCccEEEEEe
Q 047983           81 SISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP---CITCPKKPEGSMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~  156 (233)
                           ..+.... .+....++. ...+++ .....+.+++..+.+.++++++.+.|++++   +... ..|+  .+++  
T Consensus       318 -----~~l~~~~-~g~~~~~~~~~~~aal-~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v-~~~~--~~v~--  385 (456)
T 2z67_A          318 -----KEISLSY-PGRASATPVVNTLVSL-LSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKF-LDVE--SPIA--  385 (456)
T ss_dssp             -----HHHHTTS-CSCBCSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCB-CCCC--CSSE--
T ss_pred             -----hhcCcCC-CCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEe-cCCC--CeEE--
Confidence                 2221111 111111212 222222 112345678888999999999999998873   4543 4555  3334  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCE---EEE------CCcccC--CCCcEEEEeec--CHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESI---IVL------PGITVG--LKDWLRITFAV--EPSAFEIGLGRMK  223 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi---~v~------pg~~f~--~~~~~Rl~~~~--~~~~l~~~~~~l~  223 (233)
                             +.+..+.     ...++ ...|.++||   .+.      +|..+.  +.+++|++++.  +++++++++++|+
T Consensus       386 -------~~~~~~~-----~~~~l-~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~  452 (456)
T 2z67_A          386 -------SCISVNS-----DPVEI-AAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLE  452 (456)
T ss_dssp             -------EEEECSS-----CHHHH-HHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             -------EEEeccc-----HHHHH-HHHHHHcCCCcceEEeecCccccccccccCcchhhhhhhcCCCHHHHHHHHHHHH
Confidence                   2231111     02344 444556664   454      223322  25799999883  8999999999998


Q ss_pred             HHH
Q 047983          224 AFY  226 (233)
Q Consensus       224 ~~l  226 (233)
                      +++
T Consensus       453 ~~~  455 (456)
T 2z67_A          453 KIL  455 (456)
T ss_dssp             TC-
T ss_pred             HHh
Confidence            654

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.12  E-value=5.8e-10  Score=99.23  Aligned_cols=208  Identities=13%  Similarity=0.047  Sum_probs=116.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcccc-ccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVP-MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++++|.+|+...+..+.... +..+.. .. .+..+.+|.++.| .-+|++.+.+. ..+.+  ....
T Consensus       261 ~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~-aD-si~~~~hK~l~~p-~g~g~l~~~~~-~~l~~--~~~~  334 (481)
T 4e1o_A          261 SELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEY-AD-SFTFNPSKWMMVH-FDCTGFWVKDK-YKLQQ--TFSV  334 (481)
T ss_dssp             HHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGG-CS-EEEECHHHHSSCC-SSCEEEEESBH-HHHHT--TTCC
T ss_pred             HHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCccc-CC-EEEEChHHhcCCC-CceEEEEEeCH-HHHHH--HhcC
Confidence            37899999999999999999986543322211 111211 12 4557999986665 55677777763 22110  0000


Q ss_pred             hhhhhHHh----hhhhhhhc--cCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEE
Q 047983           80 HSISLNMR----MDDYLLLS--ESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFV  153 (233)
Q Consensus        80 ~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~  153 (233)
                      ....+...    ...+...+  .+.......+...+.....+.++++.+...++++++.+.|++++++....++ ...++
T Consensus       335 ~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~-~~~~v  413 (481)
T 4e1o_A          335 NPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKR-HLGLV  413 (481)
T ss_dssp             CCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCC-CSSEE
T ss_pred             CchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-ceeEE
Confidence            00000000    00000111  1111111122222222245667888899999999999999998888763344 44455


Q ss_pred             EEecCCCcccccccccccCCCCChHHHHHHHHhccC-EEEECCcccCCCCcEEEEeec---CHHHHHHHHHHHHHHHHHH
Q 047983          154 MYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEES-IIVLPGITVGLKDWLRITFAV---EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g-i~v~pg~~f~~~~~~Rl~~~~---~~~~l~~~~~~l~~~l~~~  229 (233)
                      +         ++++...    ....++..++. ++| +.+.|+. ..+..++|+++..   +++++++++++|++++++.
T Consensus       414 ~---------f~~~~~~----~~~~~l~~~L~-~~g~~~~~~~~-~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l  478 (481)
T 4e1o_A          414 V---------FRLKGPN----SLTENVLKEIA-KAGRLFLIPAT-IQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLI  478 (481)
T ss_dssp             E---------EEESSCH----HHHHHHHHHHH-HHCSSBCEEEE-ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             E---------EEeCCch----HHHHHHHHHHH-hCCeEEEEeeE-ECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            5         3332110    01344555544 456 5555533 3335789999774   6899999999999988775


Q ss_pred             h
Q 047983          230 A  230 (233)
Q Consensus       230 ~  230 (233)
                      .
T Consensus       479 ~  479 (481)
T 4e1o_A          479 L  479 (481)
T ss_dssp             H
T ss_pred             h
Confidence            4

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.11  E-value=1.5e-09  Score=96.45  Aligned_cols=198  Identities=15%  Similarity=0.064  Sum_probs=105.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|.||+.+.|..+|.-. .....+.++     +-+++|..+..++.+|.+++++  ++.+.  +.   
T Consensus       261 ~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PD-----i~t~~K~l~gG~~Pl~av~~~~--~i~~~--~~---  328 (473)
T 4e3q_A          261 AILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPD-----AIISSKNLTAGFFPMGAVILGP--ELSKR--LE---  328 (473)
T ss_dssp             HHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCS-----EEEECGGGGTTSSCCEEEEECH--HHHHH--HH---
T ss_pred             HHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCC-----hHHhcccccCCCCCcccccccH--HHHHH--hc---
Confidence            68999999999999999999997776422 111222332     4478998665559999999988  44421  11   


Q ss_pred             hhhhHHhhhh----hhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc---CCCcccccCCCccE
Q 047983           81 SISLNMRMDD----YLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKE---IPCITCPKKPEGSM  151 (233)
Q Consensus        81 ~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~~~~~~~~~~~~g~  151 (233)
                           .....    ....+.+.++..  ++++.+ +.-.++   ...+..++.-+++.+.|++   .+.+.. +...|.+
T Consensus       329 -----~~~~~~~~~~hg~T~~Gnpla~Aaala~L-~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~v~~-vRG~Gl~  398 (473)
T 4e3q_A          329 -----TAIEAIEEFPHGFTASGHPVGCAIALKAI-DVVMNE---GLAENVRRLAPRFEERLKHIAERPNIGE-YRGIGFM  398 (473)
T ss_dssp             -----HHHHHHSCCCCCCTTTTCHHHHHHHHHHH-HHHHHS---SHHHHHHHHHHHHHHHHHHHTTSTTEEE-EEEETTE
T ss_pred             -----cccccccccccCCCCCCCcchhhhhhhhh-hhhccc---cHHHHHHHHHHHHHHHHHHHhcCCCeeE-EeecceE
Confidence                 11110    011223334443  333333 111111   1222223333333333333   333322 2333333


Q ss_pred             EEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          152 FVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                      +..-+.+.+.....++.     ...-...+.+.+.++||++.|..     +.+|++..  .+++++++++++|.+.+++.
T Consensus       399 ~gielv~~~~~~~~~~~-----~~~~~~~~~~~~~~~Gll~~~~g-----~~i~l~PPL~it~~eid~~~~~l~~al~~v  468 (473)
T 4e3q_A          399 WALEAVKDKASKTPFDG-----NLSVSERIANTCTDLGLICRPLG-----QSVVLCPPFILTEAQMDEMFDKLEKALDKV  468 (473)
T ss_dssp             EEEEECSBTTTTBCCCG-----GGCHHHHHHHHHHHTTEECEEET-----TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCccccccccc-----cHHHHHHHHHHHHHCCcEEEecC-----CEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            33211111111000110     00124556666778899998743     56887643  48999999999999999876


Q ss_pred             hh
Q 047983          230 AK  231 (233)
Q Consensus       230 ~~  231 (233)
                      ..
T Consensus       469 ~a  470 (473)
T 4e3q_A          469 FA  470 (473)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.11  E-value=2.7e-09  Score=99.39  Aligned_cols=208  Identities=12%  Similarity=0.053  Sum_probs=111.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCcc-ccCCCc--ccccc--ccCC-ccCEEEEccCccccCCCCceE-EEEEecCCCccccc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHL-VFGNTH--FVPMG--VFGS-IVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQD   73 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~-~~~~~~--~~~~~--~~~~-~~~~i~~~s~sK~~~~~G~R~-G~~~~~~~~~~~~~   73 (233)
                      ++|+++|++||+++++||+|+.. .+++..  ..++.  .++. +++++++.|+||.+  +|.+. |++.+++.  .+..
T Consensus       300 ~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I~v~~~--~l~g  375 (730)
T 1c4k_A          300 HEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQIHKKDS--HIKG  375 (730)
T ss_dssp             HHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEEEEECG--GGTT
T ss_pred             HHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEEEecch--hhcC
Confidence            37899999999999999999853 343311  12222  1222 35789999999974  45554 56656652  1100


Q ss_pred             c-chhhhhhhhhHHhhhhhh--hhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCC
Q 047983           74 L-GVAFFHSISLNMRMDDYL--LLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKE-IPCITCPKKPE  148 (233)
Q Consensus        74 ~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~  148 (233)
                      - ..+.   .   .++....  ..+.+++... +++...+..-..+...+..+.+.++.+.+++.|++ ++++..+ .|+
T Consensus       376 ~~~~i~---~---~~~~~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~-~p~  448 (730)
T 1c4k_A          376 QLRYCD---H---KHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPF-VPP  448 (730)
T ss_dssp             STTCCC---H---HHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEES-SCS
T ss_pred             cccccC---H---HHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEc-ccc
Confidence            0 0010   0   1222211  1122333333 33322221111112234456666777777777776 5555432 221


Q ss_pred             -------------------------------------ccEEEEEecCCCcccccccccc---------cCCCCChHHHHH
Q 047983          149 -------------------------------------GSMFVMYCGSEDKCLLKLNYSL---------LEGINSDTEFAL  182 (233)
Q Consensus       149 -------------------------------------~g~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~  182 (233)
                                                           .+.+..     |+.++.+..+.         ..++  +...+.
T Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i-----dp~kv~i~~pg~~~~~g~~~~~g~--~~~~l~  521 (730)
T 1c4k_A          449 VVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYV-----DPNKFMLTTPGINPETGDYEDFGV--PATIVA  521 (730)
T ss_dssp             EETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEE-----CTTEEEEECSSEETTTTEECSSCC--CHHHHH
T ss_pred             ccccccccccccccccccchhhccCccchhccccccCCccccc-----CCeEEEEEeCCcccccccccccCC--CHHHHH
Confidence                                                 111111     22222233321         0122  455666


Q ss_pred             HHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHHh
Q 047983          183 KLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       183 ~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~~  230 (233)
                      +.|.++||.+.+.    ....+|++++.  ++++++.+++.|.++.+++.
T Consensus       522 ~~L~e~GI~v~~~----~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~~  567 (730)
T 1c4k_A          522 NYLRDHGIIPEKS----DLNSILFLMTPAETPAKMNNLITQLLQLQRLIE  567 (730)
T ss_dssp             HHHHHTTCCCSEE----CSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCcEEEEC----CCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            6777779988542    24678888885  78999999999999887764

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.10  E-value=7.3e-10  Score=97.84  Aligned_cols=197  Identities=14%  Similarity=0.098  Sum_probs=100.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|.||+.+.  ..+... .....+.++     +.+++|..+ .|+.+|.+.+++  ++++.  +. ..
T Consensus       245 ~lr~lc~~~g~lLI~DEV~tG--R~G~~~a~e~~gv~PD-----i~t~gK~lg-gG~Piga~~~~~--ei~~~--~~-~~  311 (454)
T 4ao9_A          245 ALRESATQVGALLVFDEVMTS--RLAPHGLANKLGIRSD-----LTTLGKYIG-GGMSFGAFGGRA--DVMAL--FD-PR  311 (454)
T ss_dssp             HHHHHHHHHTCEEEEECTTGG--GGSTTCHHHHHTCCCS-----EEEEEGGGG-TTSSCEEEEECH--HHHGG--GC-TT
T ss_pred             HHHHHHhhcCCEEEEECCCcC--CCccccchhccCCCCc-----EEEeccccC-CCCcceeeeeHH--HHHHH--Hh-hc
Confidence            689999999999999999984  333221 122223332     448899854 589999999987  44431  11 00


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEEEe
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~~  156 (233)
                          ...+.+..+++.++...+++++.+-.-..++.    .+.++++-++|.+.|++    .+... -....|.++...+
T Consensus       312 ----~~~~~h~~T~~gnPla~AAala~L~~l~~~~~----~~~~~~~g~~l~~~L~~l~~~~~~~~-~vrg~G~m~gi~f  382 (454)
T 4ao9_A          312 ----TGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEA----AGALAERGEALRARLNALCANEGVAM-QFTGIGSLMNAHF  382 (454)
T ss_dssp             ----TCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHH----HHHHHHHHHHHHHHHHHHHHHHTBSC-EEEEETTEEEEES
T ss_pred             ----cCCccccCCCCCCHHHHHHHHHHHHHHhccCh----hHHHHHHHHHHHHHHHHHHhhCCCCE-EEeeeceEEEEEE
Confidence                00011112333333333244444311112222    22333333333333322    22111 1234455544422


Q ss_pred             cCCCcccccccccccCCCCCh--HHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHhh
Q 047983          157 GSEDKCLLKLNYSLLEGINSD--TEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                      -++++.+..-    .... +.  ...+...+.++||.+.|.      +++.+++..+++++++.++.+.+++.++..
T Consensus       383 ~~~~~~~~~~----~~~~-d~~~~~~~~~~ll~~Gv~~~p~------~~~~~s~~~T~~dId~~l~al~~~l~~~~a  448 (454)
T 4ao9_A          383 VQGDVRSSED----LAAV-DGRLRQLLFFHLLNEDIYSSPR------GFVVLSLPLTDADIDRYVAAIGSFIGGHGA  448 (454)
T ss_dssp             CCSCCCSGGG----GTTC-CHHHHHHHHHHHHHTTEECCTT------CEEECCTTCCHHHHHHHHHHHHHHHHHSGG
T ss_pred             ecCCCCCHHH----HHhh-hHHHHHHHHHHHHHCCEEEcCC------CCEEEeCCCCHHHHHHHHHHHHHHHHhccc
Confidence            2222111110    0011 11  123334455779999874      345566666899999999999999998754

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.09  E-value=2.9e-09  Score=95.39  Aligned_cols=208  Identities=11%  Similarity=0.033  Sum_probs=115.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccc-cccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFV-PMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+++++|++|+.+....+... .+..+.  ..-+++.|++|.++.| .++|++++++...++++  ....
T Consensus       279 ~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~--~aD~v~~s~hK~l~~p-~g~G~l~~~~~~~~~~~--~~~~  353 (515)
T 2jis_A          279 EAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQ--RADSVAWNPHKLLAAG-LQCSALLLQDTSNLLKR--CHGS  353 (515)
T ss_dssp             HHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG--GCSEEEECTTSTTCCC-SCCEEEEESCCSCHHHH--HHCC
T ss_pred             HHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCc--cCCEEEECcccccCCC-CCeeEEEEeChHHHHHH--HhcC
Confidence            3789999999999999999998876543221 222221  2237788999986655 57999999873113321  0000


Q ss_pred             hhhhhHHhhhh----------hhhhccCcc--hHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC
Q 047983           80 HSISLNMRMDD----------YLLLSESVY--TTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKP  147 (233)
Q Consensus        80 ~~~~~~~~~~~----------~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  147 (233)
                      ..    ..+..          ....+....  .....+...+..-..+.+++..+...++++++.+.|++++++..+.+|
T Consensus       354 ~~----~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~  429 (515)
T 2jis_A          354 QA----SYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEP  429 (515)
T ss_dssp             -------------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCC
T ss_pred             Cc----hhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Confidence            00    00000          000000000  001111111111234457778888999999999999988777654456


Q ss_pred             CccEEEEEecCCCcccccccccccCCC--CCh--H------HHHHHHHhccCEEEECCcccCC-CCcEEEEee---cCHH
Q 047983          148 EGSMFVMYCGSEDKCLLKLNYSLLEGI--NSD--T------EFALKLAKEESIIVLPGITVGL-KDWLRITFA---VEPS  213 (233)
Q Consensus       148 ~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~------~~~~~ll~~~gi~v~pg~~f~~-~~~~Rl~~~---~~~~  213 (233)
                      ..+.+++         ...+.. ..+.  .++  .      ..+.+.+.+.|+.......... .+++|++++   .+++
T Consensus       430 ~~~~v~f---------~~~p~~-~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~e  499 (515)
T 2jis_A          430 EFVNVCF---------WFVPPS-LRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCA  499 (515)
T ss_dssp             SSSEEEE---------EECCGG-GTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHH
T ss_pred             CeeEEEE---------EEeCcc-ccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHH
Confidence            5566555         111110 0000  001  1      1134455566865532111112 468999995   4899


Q ss_pred             HHHHHHHHHHHHHH
Q 047983          214 AFEIGLGRMKAFYY  227 (233)
Q Consensus       214 ~l~~~~~~l~~~l~  227 (233)
                      +++.+++.|+++++
T Consensus       500 did~~~~~l~~~~~  513 (515)
T 2jis_A          500 DMDFLLNELERLGQ  513 (515)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988764

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.07  E-value=2.9e-11  Score=114.13  Aligned_cols=197  Identities=14%  Similarity=0.124  Sum_probs=105.9

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|+||++..|..+|..+ .....+-.+.   +.++||.++. | +++|++++++  ++++.  +..  
T Consensus       620 ~l~~lc~~~gilLI~DEV~tGfGRtG~~f-a~e~~gv~PD---iitlsK~L~g-G~~Plgav~~~~--~i~~~--~~~--  688 (831)
T 4a0g_A          620 VLVNECRNRKIPVIFDEVFTGFWRLGVET-TTELLGCKPD---IACFAKLLTG-GMVPLAVTLATD--AVFDS--FSG--  688 (831)
T ss_dssp             HHHHHHHHTTCCEEEECTTTTTTTTSBSS-THHHHSSCCS---EEEECGGGGT-TSSCCEEEEECH--HHHHT--TCS--
T ss_pred             HHHHHHHHcCCeEEEEcCccccccCCCch-hhHhcCCCCc---EEEEeccccc-CccCcEEEEECH--HHHHH--Hhc--
Confidence            68999999999999999999987777533 2222222222   3379998765 6 8999999988  44431  110  


Q ss_pred             hhhhHHhhhhh-hhhccCcchHH--HHHHHH--hhhc-HHHHHHHHHHHHHHH-HHHHHHHhhcCCCcccccCCCccEEE
Q 047983           81 SISLNMRMDDY-LLLSESVYTTV--GAVPQI--LEKT-EEEFFSKITDILREA-ADICCDRLKEIPCITCPKKPEGSMFV  153 (233)
Q Consensus        81 ~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~--l~~~-~~~~~~~~~~~~~~~-~~~l~~~L~~~~~~~~~~~~~~g~~~  153 (233)
                       .   .+...+ ...+.+.++.+  ++++.+  ++.. ..+.+.+..+.+++. .+.+.+.+++.+.+.. ....|.++.
T Consensus       689 -~---~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~-vrg~Gl~~~  763 (831)
T 4a0g_A          689 -D---SKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQR-VVVIGTLFA  763 (831)
T ss_dssp             -S---CGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEE-EEEETTEEE
T ss_pred             -c---cccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcee-EeecccEEE
Confidence             0   011000 11222333333  444433  1111 001111111222111 1223444555554432 445454444


Q ss_pred             EEecCCCcccccccccc-cCC-CCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          154 MYCGSEDKCLLKLNYSL-LEG-INSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                      +          .+.... ..+ .......+.+.+.++||.+.|+.     +.+|++..  .+++++++++++|.+++++.
T Consensus       764 i----------el~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~g-----~~lrl~pp~~~t~e~id~~~~~l~~~l~~l  828 (831)
T 4a0g_A          764 L----------ELKADASNSGYASLYAKSLLIMLREDGIFTRPLG-----NVIYLMCGPCTSPEICRRLLTKLYKRLGEF  828 (831)
T ss_dssp             E----------EEC---------CHHHHHHHHHHHHTTEECCCBT-----TEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred             E----------EEecCccccccchHHHHHHHHHHHHCCcEEEecC-----CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3          221100 000 00123445556668899999853     78999844  49999999999999988754

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.06  E-value=6.5e-09  Score=93.19  Aligned_cols=212  Identities=12%  Similarity=0.052  Sum_probs=116.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++++|++|+......+.. ..+.....  --+++.+.+|.++.| ..+|++++++. ..++.  ....
T Consensus       268 ~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~--aDsv~~~~hK~l~~p-~g~g~l~~~~~-~~~~~--~~~~  341 (511)
T 3vp6_A          268 QEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIER--ANSVTWNPHKMMGVL-LQCSAILVKEK-GILQG--CNQM  341 (511)
T ss_dssp             HHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGG--CSEEEECTTSTTCCC-SCCEEEEESST-THHHH--HHCC
T ss_pred             HHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCcc--CCEEEECcccccCCC-cCeEEEEEeCH-HHHHH--Hhcc
Confidence            378999999999999999999866533222 11211211  125567999987766 67899998874 22211  1000


Q ss_pred             hhhhhHHh------hhhhhhhc--cCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc--CCCc
Q 047983           80 HSISLNMR------MDDYLLLS--ESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPK--KPEG  149 (233)
Q Consensus        80 ~~~~~~~~------~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~  149 (233)
                      +...+...      ...+...+  .+....+..+...+.....+.++++.++..++.+++.+.|++.+++....  .|..
T Consensus       342 ~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~  421 (511)
T 3vp6_A          342 HASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEH  421 (511)
T ss_dssp             CCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSS
T ss_pred             CCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCe
Confidence            00000000      00000000  01111112222222223567888999999999999999999887877544  4666


Q ss_pred             cEEEEEecCCCcccccccccccCCCCCh----------HHHHHHHHhccCEEEECCcccCC--CCcEEEEeec---CHHH
Q 047983          150 SMFVMYCGSEDKCLLKLNYSLLEGINSD----------TEFALKLAKEESIIVLPGITVGL--KDWLRITFAV---EPSA  214 (233)
Q Consensus       150 g~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~---~~~~  214 (233)
                      ++.+|         ...|.. ..+..++          ...+.+.|.++|+.+.. ..+..  .+++|+++..   +.++
T Consensus       422 ~~v~f---------~~~p~~-~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~-~~~~~~~~~~lRi~~~~~~~t~~d  490 (511)
T 3vp6_A          422 TNVCF---------WYIPQS-LRGVPDSPQRREKLHKVAPKIKALMMESGTTMVG-YQPQGDKANFFRMVISNPAATQSD  490 (511)
T ss_dssp             SCEEE---------EECCGG-GSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEE-EEEETTEEEEEEECCCCTTCCHHH
T ss_pred             EEEEE---------EEeCcc-ccccccchhHHHHHHHHHHHHHHHHHhcCCEEEE-EEEeCCceEEEEEEecCCCCCHHH
Confidence            76655         111111 0000001          12345555566765554 22222  3589999953   7888


Q ss_pred             HHHHHHHHHHHHHHH
Q 047983          215 FEIGLGRMKAFYYRH  229 (233)
Q Consensus       215 l~~~~~~l~~~l~~~  229 (233)
                      ++.+++.|+++-+..
T Consensus       491 i~~ll~~i~~~~~~~  505 (511)
T 3vp6_A          491 IDFLIEEIERLGQDL  505 (511)
T ss_dssp             HHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999988888776554

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.05  E-value=2e-09  Score=100.79  Aligned_cols=64  Identities=13%  Similarity=0.005  Sum_probs=44.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCcc-ccCCC--ccccccc--cC-CccCEEEEccCccccCCCCce-EEEEEecC
Q 047983            1 FCIEETTKKLGIMVIADEVYGHL-VFGNT--HFVPMGV--FG-SIVPVLTLGSISKRWIVPGWR-LGWLVTSD   66 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~-~~~~~--~~~~~~~--~~-~~~~~i~~~s~sK~~~~~G~R-~G~~~~~~   66 (233)
                      ++|+++|++||+++++||+|+.. .+++.  +..++..  .+ ..+++|++.|++|.+  +|.+ .|++++++
T Consensus       331 ~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~~~~  401 (755)
T 2vyc_A          331 KEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHVRE  401 (755)
T ss_dssp             HHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSS--SCCTTCEEEEEEC
T ss_pred             HHHHHHHHHcCCEEEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccc--cCcCCeeeeeecC
Confidence            37899999999999999999854 33321  1223322  23 246788999999974  4665 57787876

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.01  E-value=3.8e-09  Score=92.32  Aligned_cols=58  Identities=16%  Similarity=0.212  Sum_probs=44.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEec
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTS   65 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~   65 (233)
                      ++|.++|++||+++|+|++|..+.+.+.   ++ ..   ...+++.|+||.++.+|.|+|++++.
T Consensus       164 ~~i~~~a~~~g~~livD~~~~~~g~~~~---~~-~~---~~Di~~~s~~K~l~~~g~~~G~~~~~  221 (421)
T 2ctz_A          164 EALAQAAREKGVALIVDNTFGMGGYLLR---PL-AW---GAALVTHSLTKWVGGHGAVIAGAIVD  221 (421)
T ss_dssp             HHHHHHHHHHTCEEEEECGGGGGGTSCC---GG-GG---TCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred             HHHHHHHHHcCCEEEEECCcccccccCC---cc-cc---CCeEEEECCcccccCCCCcEEEEEEe
Confidence            3789999999999999999933333222   12 12   23488999999999999999998886

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=98.73  E-value=7.1e-08  Score=83.07  Aligned_cols=191  Identities=11%  Similarity=0.016  Sum_probs=101.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|+ ||++||+|++|.........  ++.  .. .+-.++..+.+|.++. | +.|+++++++ ++.+.   +  
T Consensus       146 ~~i~~la~-~~~~vi~D~a~a~g~~~~~~--~~g--~~~~d~~~~S~~~~K~l~~-g-~gG~~~~~~~-~l~~~---~--  212 (377)
T 3ju7_A          146 EEYEELEK-KGVPVVVDAAPGFGLMNGGM--HYG--QDFSGMIIYSFHATKPFGI-G-EGGLIYSKNE-EDIQR---I--  212 (377)
T ss_dssp             HHHHHHHH-TTCCBEEECTTCTTCEETTE--ETT--TTCSSEEEEECBTTSSSCC-B-SCEEEEESCH-HHHHH---H--
T ss_pred             HHHHHHHh-cCCEEEEECCCccCCeECCE--ecc--CCCCcEEEEECCCCCcCCC-C-CcEEEEECCH-HHHHH---H--
Confidence            37899999 99999999999864321111  110  11 1222333345698765 5 6788888763 23321   1  


Q ss_pred             hhhhhHHhhhhhh----------hhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCc
Q 047983           80 HSISLNMRMDDYL----------LLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEG  149 (233)
Q Consensus        80 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  149 (233)
                            ..++...          ..+.......+++...    .-+.+....++.+++++.+.+.|++++++.....+..
T Consensus       213 ------~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~----~l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~  282 (377)
T 3ju7_A          213 ------KRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIA----TMKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQK  282 (377)
T ss_dssp             ------HHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHH----HHHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCC
T ss_pred             ------HHHHhcCCCCCCceeeccccCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCC
Confidence                  1111110          1111122221222111    1234455666667777777788877654311122322


Q ss_pred             c---E--EEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcc--c------C-----C--------CCc
Q 047983          150 S---M--FVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGIT--V------G-----L--------KDW  203 (233)
Q Consensus       150 g---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~--f------~-----~--------~~~  203 (233)
                      +   +  |+.         +.++..      .+.+.+.+.|+++||.+.++..  .      .     .        ...
T Consensus       283 ~~~~~~~~~~---------~~~~~~------~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  347 (377)
T 3ju7_A          283 TEAVIQQFMP---------ILCPEE------VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRI  347 (377)
T ss_dssp             CSCBCCSSEE---------EECCTT------SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHE
T ss_pred             CCcceEEEEE---------EEeCCh------hhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCE
Confidence            2   1  222         222210      1367777888899999987651  1      0     0        346


Q ss_pred             EEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          204 LRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       204 ~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                      +|+++..  ++++++..++.|++++...
T Consensus       348 l~lp~~~~~t~~di~~v~~~l~~~~~~~  375 (377)
T 3ju7_A          348 VSLPLWEGMTKEIVEQIVICLGQKVVSA  375 (377)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHTC-----
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            8888886  7899999999998877653

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=98.72  E-value=2e-07  Score=80.02  Aligned_cols=95  Identities=14%  Similarity=0.125  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC-CccE-EEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEE
Q 047983          115 EFFSKITDILREAADICCDRLKEIPCITCPKKP-EGSM-FVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIV  192 (233)
Q Consensus       115 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v  192 (233)
                      +++++..+..+++++++.+.|++++++..+..+ .+++ .++         +.++...  +.  +.+.+.+.|.++||.+
T Consensus       266 ~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~---------i~~~~~~--~~--~~~~l~~~L~~~gI~v  332 (390)
T 3b8x_A          266 KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFS---------FIIKKDS--GV--IRKQLVENLNSAGIEC  332 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEE---------EEECTTS--CC--CHHHHHHHHHHTTBCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEE---------EEecCcC--cc--cHHHHHHHHHHCCCCe
Confidence            456678888889999999999887766542222 2333 244         3333110  11  4455666677889999


Q ss_pred             EC---CcccCC----------------------CCcEEEEeec--CHHHHHHHHHHH
Q 047983          193 LP---GITVGL----------------------KDWLRITFAV--EPSAFEIGLGRM  222 (233)
Q Consensus       193 ~p---g~~f~~----------------------~~~~Rl~~~~--~~~~l~~~~~~l  222 (233)
                      .+   |+....                      .+.+|+++..  ++++++.+++.|
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l  389 (390)
T 3b8x_A          333 RPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL  389 (390)
T ss_dssp             BCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred             eeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence            87   321111                      1358999886  788888877654

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=98.61  E-value=7.3e-07  Score=78.23  Aligned_cols=202  Identities=14%  Similarity=0.131  Sum_probs=109.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccc-cCCCccccccccCCccCEEEEccCccccCCC-CceEEEEE-ecCCCccccccchh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLV-FGNTHFVPMGVFGSIVPVLTLGSISKRWIVP-GWRLGWLV-TSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~R~G~~~-~~~~~~~~~~~~~~   77 (233)
                      ++|+++|++||+++++||+|+... +..+.+.....++.-|  +++.|.-|.+..| |   |.++ ..++ ++      +
T Consensus       236 ~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD--~vVqS~HK~llvpIG---G~ii~~~d~-e~------l  303 (501)
T 3hl2_A          236 EELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRID--AFVQSLDKNFMVPVG---GAIIAGFND-SF------I  303 (501)
T ss_dssp             HHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCC--EEEEEHHHHHCCCSS---CEEEEESCH-HH------H
T ss_pred             HHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCc--EEEecccccceeecC---ceEEEeCCH-HH------H
Confidence            479999999999999999999644 2221122232333112  6788999986555 4   4444 4442 22      2


Q ss_pred             hhhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccccCCCccEEEE
Q 047983           78 FFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEI---PCITCPKKPEGSMFVM  154 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~g~~~~  154 (233)
                              .++.....-..+..+....+..++ .-+.+-.+++.+...++.+++.+.|+++   .+......|...+-+.
T Consensus       304 --------~~~~~~yPGr~S~Spsldl~~tLL-~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a  374 (501)
T 3hl2_A          304 --------QEISKMYPGRASASPSLDVLITLL-SLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLA  374 (501)
T ss_dssp             --------HHHHHTSCSCBCSHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEE
T ss_pred             --------HHHHHhCCCCCCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEE
Confidence                    333222111111222212333333 2334445777777777777777777663   1222234454555555


Q ss_pred             EecCCCcccccccccccCCCCChHHHHHHHHhc--cCEEEEC-Cc----------ccCC------CCcEEEEeec--CHH
Q 047983          155 YCGSEDKCLLKLNYSLLEGINSDTEFALKLAKE--ESIIVLP-GI----------TVGL------KDWLRITFAV--EPS  213 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~gi~v~p-g~----------~f~~------~~~~Rl~~~~--~~~  213 (233)
                               +.+..-......+-..+-..+...  .|-.|+| |.          .||.      ..|+-++-+.  +.+
T Consensus       375 ---------~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~  445 (501)
T 3hl2_A          375 ---------MTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQ  445 (501)
T ss_dssp             ---------EECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHH
T ss_pred             ---------EecccccccccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHH
Confidence                     223211000000122333333322  2555554 55          4553      4677665553  899


Q ss_pred             HHHHHHHHHHHHHHHHhhc
Q 047983          214 AFEIGLGRMKAFYYRHAKK  232 (233)
Q Consensus       214 ~l~~~~~~l~~~l~~~~~~  232 (233)
                      +++..++||.+.+.++.++
T Consensus       446 ~v~~~~~~l~~~~~~~~~~  464 (501)
T 3hl2_A          446 DVDLFIKRLDRCLKAVRKE  464 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999988765

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=98.61  E-value=9e-08  Score=83.92  Aligned_cols=114  Identities=14%  Similarity=0.033  Sum_probs=73.0

Q ss_pred             ChHHHHHHH--cCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchh
Q 047983            1 FCIEETTKK--LGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~--~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++|+++|++  +|+++|+|++|..+.+...+   . ..   ...++++|+||.++.+| .+.||+++++  +++      
T Consensus       200 ~~i~~la~~~~~g~~livD~a~~~~~~~~~p---~-~~---gaDiv~~S~sK~lgg~g~~~gG~i~~~~--~li------  264 (427)
T 3i16_A          200 KSIVDCVKNIRKDIICFVDNCYGEFMDTKEP---T-DV---GADLIAGSLIKNIGGGIAPTGGYLAGTK--DCI------  264 (427)
T ss_dssp             HHHHHHHHHHCTTSEEEEECTTTTTSSSSCG---G-GG---TCSEEEEETTSGGGTTTCCSCEEEEECH--HHH------
T ss_pred             HHHHHHHHHhCCCCEEEEECCCccccccCCc---c-cc---CCeEEEecCcccCCCCCCceEEEEEECH--HHH------
Confidence            378999999  99999999999987643321   1 11   22388999999988766 6789999987  444      


Q ss_pred             hhhhhhhHHhhhhhh---hhccCcch-HHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047983           78 FFHSISLNMRMDDYL---LLSESVYT-TVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC  140 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  140 (233)
                              .+++...   .++....+ ...+...+   ..-+....+.+...+++..+.+.|++++.
T Consensus       265 --------~~l~~~~~~~~~g~~~~~~~~~a~~~l---~gl~~~~~r~~~~~~~a~~la~~L~~~g~  320 (427)
T 3i16_A          265 --------EKTSYRLTVPGIGGECGSTFGVVRSMY---QGLFLAPHISMEALKGAILCSRIMELAGF  320 (427)
T ss_dssp             --------HHHHHHHSCTTTGGGCCCCTTCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             --------HHHHHhcccCccCccCCccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                    3333311   11111111 11111111   22344566778888999999999988743

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=98.59  E-value=7.6e-07  Score=82.57  Aligned_cols=201  Identities=11%  Similarity=0.002  Sum_probs=101.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccc-cCCCccccccccCC---ccC-EEEEccCccccCCCCceEEEEEecCCCccccccc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLV-FGNTHFVPMGVFGS---IVP-VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLG   75 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~-~~~~~~~~~~~~~~---~~~-~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~   75 (233)
                      ++|+++|++++  +++||+|+... +++. .....++..   .+. ++++.|++|+++.+ ...||+.+++  .+..  .
T Consensus       316 ~~I~ela~~~~--livDEAH~~~~~f~~~-~~~~~al~~g~~aD~vii~~~S~hKtL~gl-tqgs~i~v~~--~i~~--~  387 (715)
T 3n75_A          316 DFIKKTLDVKS--IHFDSAWVPYTNFSPI-YEGKCGMSGGRVEGKVIYETQSTHKLLAAF-SQASMIHVKG--DVNE--E  387 (715)
T ss_dssp             HHHHHHCCCSE--EEEECTTCTTGGGSGG-GTTSSTTSSSCCTTCEEEEEECHHHHSSCC-TTCEEEEEES--CCCH--H
T ss_pred             HHHHHHhCcCc--EEEccccccccccCCc-cccccccccCcCCCEEEEEEecccccccCC-CCeeEEEeCc--hhhH--H
Confidence            36888898764  79999999653 4432 111222221   244 37799999985532 1348999887  2211  1


Q ss_pred             hhhhhhhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC------cccccC--
Q 047983           76 VAFFHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC------ITCPKK--  146 (233)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~------~~~~~~--  146 (233)
                      .+        ++...... +.+++... +++...+..-......+.++.+.++.+.+++.|+++++      +.++.+  
T Consensus       388 ~~--------~~~~~~~~-STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~  458 (715)
T 3n75_A          388 TF--------NEAYMMHT-TTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDH  458 (715)
T ss_dssp             HH--------HHHHHHTS-CSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSC
T ss_pred             HH--------HHHHHhhc-CCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCccc
Confidence            12        33333222 33444433 33322211101112233455556666666666654321      111110  


Q ss_pred             --------------------CCccEEEEEecCCCcccccccccccC--------CCCChHHHHHHHHhccCEEEECCccc
Q 047983          147 --------------------PEGSMFVMYCGSEDKCLLKLNYSLLE--------GINSDTEFALKLAKEESIIVLPGITV  198 (233)
Q Consensus       147 --------------------~~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ll~~~gi~v~pg~~f  198 (233)
                                          ...+.+..     ||.++.+..+...        ++  +...+.+.|+++||.+--    
T Consensus       459 ~~~~~~~~~~~~~~w~gf~~~~~~~~~~-----Dp~Kl~i~~~~~~~~G~~~~~Gi--~g~~~~~~L~~~~I~~E~----  527 (715)
T 3n75_A          459 IDTTECWPLRSDSTWHGFKNIDNEHMYL-----DPIKVTLLTPGMEKDGTMSDFGI--PASIVAKYLDEHGIVVEK----  527 (715)
T ss_dssp             CCSCSCEECCTTCCTTCCTTCCSSSEEE-----CTTEEEEECSCBCTTSCBCSSCC--CHHHHHHHHHHTTCCCSE----
T ss_pred             ccchhhhccCcccccccccccccCcccC-----CCeEEEEEcCCCCCCCccccCCC--cHHHHHHHHHHCCCEEEe----
Confidence                                01122223     7777666654331        33  455677778888998743    


Q ss_pred             CCCCcEEE--EeecCHHHHHHHHHHHHHHHHHH
Q 047983          199 GLKDWLRI--TFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       199 ~~~~~~Rl--~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                      .....+=+  +++.++++++.+++.|.++-+.+
T Consensus       528 ~d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~~  560 (715)
T 3n75_A          528 TGPYNLLFLFSIGIDKTKALSLLRALTDFKRAF  560 (715)
T ss_dssp             EETTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence            22233322  44447777777777777665544

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=98.55  E-value=3.2e-06  Score=72.87  Aligned_cols=191  Identities=12%  Similarity=0.049  Sum_probs=110.2

Q ss_pred             HHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhhhhhH
Q 047983            6 TTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLN   85 (233)
Q Consensus         6 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      +|+++|+++++|-+.+-    +..+..+..+   +  +.+.|--|.+|.+|  +|++.+++  .+++++.-.  ... . 
T Consensus       172 i~~~~~~~~~vD~~q~~----g~~~id~~~~---~--~~~~s~~K~~gp~G--~g~l~~~~--~~l~~~~~~--~p~-~-  234 (377)
T 3e77_A          172 IPDVKGAVLVCDMSSNF----LSKPVDVSKF---G--VIFAGAQKNVGSAG--VTVVIVRD--DLLGFALRE--CPS-V-  234 (377)
T ss_dssp             CCCCTTCCEEEECTTTT----TSSCCCGGGC---S--EEEEEGGGTTSCTT--CEEEEEET--TSCSCCCTT--SCG-G-
T ss_pred             hhccCCCEEEEEccccc----CCCCCchhhc---C--EEEEecccccCCCc--cEEEEEcH--HHHhhccCC--CCc-h-
Confidence            46778999999998886    2233333322   2  46788999999888  68888877  444321100  000 0 


Q ss_pred             Hhhhhh--hhhccCcchH-H-HHHHHHhhhcHHH-HHHHHHHHHHHHHHHHHHHhhcCCCccccc-CC--CccEEEEEec
Q 047983           86 MRMDDY--LLLSESVYTT-V-GAVPQILEKTEEE-FFSKITDILREAADICCDRLKEIPCITCPK-KP--EGSMFVMYCG  157 (233)
Q Consensus        86 ~~~~~~--~~~~~~~~~~-~-~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~--~~g~~~~~~~  157 (233)
                      -.+...  .....++++. . .++...++--.+. =++++.++.++..+++++.|++++++.... .+  .++..+.   
T Consensus       235 ~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivs---  311 (377)
T 3e77_A          235 LEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIP---  311 (377)
T ss_dssp             GCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEE---
T ss_pred             hhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEE---
Confidence            000100  0111222222 2 4444333211112 267788889999999999999886654211 11  1233233   


Q ss_pred             CCCcccccccccccCCCCC--hH-HHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINS--DT-EFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~--~~-~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                            +.++     ++..  +. ..+...+.++||.+.+|..  ..+.+|+|+..  ++++++.+++.|+++++++
T Consensus       312 ------f~~~-----~~~~~~~~~~~~l~~l~~~Gi~~~~g~~--~~g~iRiS~~~~~t~edId~l~~al~~~~~~~  375 (377)
T 3e77_A          312 ------FRIG-----NAKGDDALEKRFLDKALELNMLSLKGHR--SVGGIRASLYNAVTIEDVQKLAAFMKKFLEMH  375 (377)
T ss_dssp             ------EEES-----STTCCHHHHHHHHHHHHHTTEESCBCCT--TTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             ------EEcC-----CCCCchhHHHHHHHHHHHCCcEEeCCCC--cCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence                  2233     1111  11 2344455578999988753  24679999996  7999999999999998764

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=98.53  E-value=3.6e-07  Score=79.65  Aligned_cols=112  Identities=13%  Similarity=0.018  Sum_probs=70.7

Q ss_pred             ChHHHHHHH--cCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchh
Q 047983            1 FCIEETTKK--LGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~--~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++|+++|++  ||+++|+|++|..+.+...+   . ..   ...++++|+||.++.+| .+.||+++++  ++++     
T Consensus       183 ~~I~~la~~~~~~~~livD~a~~~~~~~~~p---~-~~---g~Div~~S~sK~lgg~~~~~GG~v~~~~--~li~-----  248 (409)
T 3jzl_A          183 KEMIVFVKNINPEVIVFVDNCYGEFVEYQEP---P-EV---GADIIAGSLIKNPGGGLAKTGGYIAGKE--ALVD-----  248 (409)
T ss_dssp             HHHHHHHHHHCTTCEEEEECTTCTTTSSCCS---G-GG---TCSEEEEETTSGGGTTTCSSCEEEEECH--HHHH-----
T ss_pred             HHHHHHHHhhCCCCEEEEeCCcccccccCCc---c-cc---CCeEEEECccccCCccCCceEEEEEeCH--HHHH-----
Confidence            378999999  99999999999987643221   1 12   22389999999988776 4469999986  4543     


Q ss_pred             hhhhhhhHHhhhhh-----hhhccCcch-HHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047983           78 FFHSISLNMRMDDY-----LLLSESVYT-TVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC  140 (233)
Q Consensus        78 ~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  140 (233)
                               +++..     .....++.. ...+   ++  ..-+.....++...+++..+.+.|++++.
T Consensus       249 ---------~l~~~~~~~~~g~~~g~~~~~~~~---~l--~gl~~~~~r~~~~~~~a~~la~~L~~~g~  303 (409)
T 3jzl_A          249 ---------LCGYRLTTPGIGREAGASLYSLLE---MY--QGFFLAPHVTAQAIKGARFTAAMLAEFGV  303 (409)
T ss_dssp             ---------HHHHHHSCTTTGGGCCCCTTCHHH---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ---------HHHHHhccccccccccccHHHHHH---HH--HHHhhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                     22221     111111111 1111   11  11233456677788999999999988743

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=98.50  E-value=2.5e-07  Score=81.04  Aligned_cols=113  Identities=12%  Similarity=0.027  Sum_probs=70.7

Q ss_pred             ChHHHHHHH--cCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccchh
Q 047983            1 FCIEETTKK--LGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~--~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++|+++|++  +|+++|+|++|..+.+...+   .. .   ...++++|+||.++..| .+.||+++++  +++      
T Consensus       200 ~~i~~ia~~~~~g~~livD~a~~~~~~~~~p---~~-~---gaDiv~~S~sK~lgg~g~~~GG~i~~~~--~li------  264 (427)
T 3hvy_A          200 AEIIKSIREVNENVIVFVDNCYGEFVEEKEP---TD-V---GADIIAGSLIKNIGGGIATTGGYIAGKE--EYV------  264 (427)
T ss_dssp             HHHHHHHHHHCSSSEEEEECTTCTTTSSSCG---GG-G---TCSEEEEETTSGGGTTTCCSCEEEEECH--HHH------
T ss_pred             HHHHHHHHHhCCCCEEEEECCccccccCCCC---cc-c---CCeEEEECCcccccccccceEEEEEECH--HHH------
Confidence            378999999  89999999999987643321   11 1   22388999999988766 5669999876  444      


Q ss_pred             hhhhhhhHHhhhhhh---hhc--cCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047983           78 FFHSISLNMRMDDYL---LLS--ESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC  140 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  140 (233)
                              .+++...   .++  .++ +...+...+   ..-.....+.+...+++..+.+.|++++.
T Consensus       265 --------~~l~~~~~~~~~g~~~~~-~~~~a~~~~---~gl~~~~~r~~~~~~~a~~la~~L~~~g~  320 (427)
T 3hvy_A          265 --------TQATFRVTVPGIGGECGS-TFGVMRSLY---EGLFMAPHVTIEAVKGAVFCARIMELAGF  320 (427)
T ss_dssp             --------HHHHHHHSCTTTGGGCCC-CTTCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             --------HHHHHHhhcCCcccccCC-CHHHHHHHH---HhHhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                    3333211   111  111 111111111   12233455777888899999999988743

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=98.43  E-value=2.6e-05  Score=67.36  Aligned_cols=189  Identities=13%  Similarity=0.093  Sum_probs=104.2

Q ss_pred             cCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhhhhhHHhhh
Q 047983           10 LGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMD   89 (233)
Q Consensus        10 ~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (233)
                      +|+++++|-+.+-    +..+..+..+   +  +.+.|--|.+|.+|  +|++.+++  .+++++.-..-...+......
T Consensus       191 ~g~~~~vDa~qs~----g~~pidv~~~---~--~~~~s~hK~lGP~G--~g~l~v~~--~~~~~~~~~~p~~~~~~~~~~  257 (386)
T 3qm2_A          191 PEVVVTADFSSTI----LSAPLDVSRY---G--VIYAGAQKNIGPAG--LTLVIVRE--DLLGKAHESCPSILDYTVLND  257 (386)
T ss_dssp             TTCCEEEECTTTT----TSSCCCGGGC---S--EEEEETTTTTCCTT--EEEEEEEG--GGCSCCCTTSCGGGCHHHHHH
T ss_pred             CCCEEEEEccccc----CCCCCCcccc---C--EEEEecccccCCCc--cEEEEECH--HHHhhhcccCCcHHHHHHHhh
Confidence            6899999988775    3333333332   2  45689999998888  78888887  444321100000000000000


Q ss_pred             hhhhh-ccCcchHHHHHHHHhhhcHHH-HHHHHHHHHHHHHHHHHHHhhcCCCcccccCC--CccEEEEEecCCCccccc
Q 047983           90 DYLLL-SESVYTTVGAVPQILEKTEEE-FFSKITDILREAADICCDRLKEIPCITCPKKP--EGSMFVMYCGSEDKCLLK  165 (233)
Q Consensus        90 ~~~~~-~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~  165 (233)
                      ..... +.+.... .++...++--.+. =+++..++.++.++++++.|++++.......+  .+...+.         +.
T Consensus       258 ~~~~~gTp~v~~i-~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~---------f~  327 (386)
T 3qm2_A          258 NDSMFNTPPTFAW-YLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVP---------FQ  327 (386)
T ss_dssp             C-------CCSHH-HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEE---------EE
T ss_pred             cCCCCCCCcHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEE---------EE
Confidence            00011 1111111 3343333211122 26778888899999999999887321211111  1222333         23


Q ss_pred             ccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          166 LNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                      ++.+   +.  +..+ ...|.++||.+.+|...  .+.+|+|+..  ++++++.+++.|+++.+++
T Consensus       328 ~~~~---~~--~~~~-~~~L~~~gI~~~~g~~~--~~~iRiS~~~~~t~edId~l~~~l~~~~~~~  385 (386)
T 3qm2_A          328 LADN---TL--DKVF-LEESFAAGLHALKGHRV--VGGMRASIYNAMPIEGVKALTDFMIDFERRH  385 (386)
T ss_dssp             ESSG---GG--HHHH-HHHHHHTTEECCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCc---cc--cHHH-HHHHHHCCCEEeCCCCC--cCeEEEEcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            4321   11  4344 44477889999887543  2459999986  7999999999999988764

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=98.36  E-value=5.6e-07  Score=78.94  Aligned_cols=110  Identities=14%  Similarity=0.051  Sum_probs=67.1

Q ss_pred             ChHHHHHHH--cCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC-CCceEEEEEecCCCccccccchh
Q 047983            1 FCIEETTKK--LGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~--~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++|+++|++  +|+++|+||+|+.+.++...   . .++   ..++++|+||.++. .+...||+++++  +++      
T Consensus       189 ~~i~~la~~~~~~~~livDea~~~~~~~~~~---~-~~g---~Di~~~S~sK~lgg~~~~~GG~v~~~~--~li------  253 (431)
T 3ht4_A          189 KEMIAFVKEIKPDVVVFVDNCYGEFIEEQEP---C-HVG---ADLMAGSLIKNPGGGIVKTGGYIVGKE--QYV------  253 (431)
T ss_dssp             HHHHHHHHHHCTTCEEEEECTTCTTSSSCCG---G-GTT---CSEEEEETTSGGGTTTCSSCEEEEECH--HHH------
T ss_pred             HHHHHHHHhhCCCCEEEEeCCChhhccCCCc---c-ccC---CeEEEcCccccCCCCCCCceEEEEecH--HHH------
Confidence            378999999  99999999999998765421   1 122   23889999998543 223339999987  444      


Q ss_pred             hhhhhhhHHhhhhhh---hh--ccCcchH-H-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 047983           78 FFHSISLNMRMDDYL---LL--SESVYTT-V-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP  139 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~---~~--~~~~~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  139 (233)
                              ..+....   ..  ..++... . .++..      -.......+...++++.+.+.|++++
T Consensus       254 --------~~l~~~~~~~~~g~~~~~~~~~~~~~~~~------l~~~~~~~~~~~~~a~~l~~~L~~~g  308 (431)
T 3ht4_A          254 --------EACAYRLTSPGIGAEAGASLYSLQEMYQG------FFLAPHVAGQALKGAIFTAAFLEKLG  308 (431)
T ss_dssp             --------HHHHHHHSCTTTTTSCSCCCSCSHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             --------HHHHHHhccCCcccccCccHHHHHHHHhH------hhhHHHHHHHHHHHHHHHHHHHHhCc
Confidence                    3332211   11  1111111 1 11111      22345566778888889999998763

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=98.34  E-value=4.1e-05  Score=67.02  Aligned_cols=196  Identities=15%  Similarity=0.100  Sum_probs=126.5

Q ss_pred             hHHHHHHHcCcEEEEccccC-ccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccc-------
Q 047983            2 CIEETTKKLGIMVIADEVYG-HLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD-------   73 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~-------   73 (233)
                      ++.++|++.|.+|++|-+|. .++-+|..+.|+..  .+   |+..|..|++  +|-|-|.|.+.+...-++.       
T Consensus       222 ~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~--AD---vVTtTTHKTL--rGPrGG~Il~~~~~~~~~~k~~~~~~  294 (490)
T 3ou5_A          222 RMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH--AD---IVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIP  294 (490)
T ss_dssp             HHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT--CS---EEEEESSSTT--CSCSCEEEEEECSEEEECC--CCEEE
T ss_pred             HHHHHHhhcccEEEechhhhhhhhcccccCCcccc--ce---EEeccccccc--cCCCceEEEeccccccccccccchhH
Confidence            68899999999999999998 66667766666643  22   7789999975  5677799988762100000       


Q ss_pred             cchhhhhhhhhHHhhhhhhhh--ccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcc
Q 047983           74 LGVAFFHSISLNMRMDDYLLL--SESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGS  150 (233)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g  150 (233)
                      -++.        .++......  ..++.... ++.+..+......+++...+.+.+|.+.|.+.|.+. ++.........
T Consensus       295 ~~~~--------kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~-G~~vvsGgTdn  365 (490)
T 3ou5_A          295 YTFE--------DRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDN  365 (490)
T ss_dssp             CCCH--------HHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSS
T ss_pred             HHHH--------HHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCc
Confidence            0122        445444332  22222222 555554544445677888999999999999999886 44332333334


Q ss_pred             EEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEE----CCcccC-CCCcEEEEeec------CHHHHHHHH
Q 047983          151 MFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVL----PGITVG-LKDWLRITFAV------EPSAFEIGL  219 (233)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~-~~~~~Rl~~~~------~~~~l~~~~  219 (233)
                      -.++           +++... ++  +-..+.+.|.+.||.+.    |+..-. ..+.+||....      .++++++..
T Consensus       366 HlvL-----------vDl~~~-g~--tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA  431 (490)
T 3ou5_A          366 HLVL-----------VDLRPK-GL--DGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVV  431 (490)
T ss_dssp             SEEE-----------EECGGG-TC--CHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHH
T ss_pred             eEEE-----------Eecccc-CC--CHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHH
Confidence            4555           454332 33  66778889999999985    544211 15689997652      578888888


Q ss_pred             HHHHHHHH
Q 047983          220 GRMKAFYY  227 (233)
Q Consensus       220 ~~l~~~l~  227 (233)
                      +.|.+++.
T Consensus       432 ~~I~~~l~  439 (490)
T 3ou5_A          432 DFIDEGVN  439 (490)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88877664

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=98.27  E-value=2.9e-05  Score=66.44  Aligned_cols=187  Identities=13%  Similarity=0.045  Sum_probs=105.7

Q ss_pred             cCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhhhhhHHhhh
Q 047983           10 LGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMD   89 (233)
Q Consensus        10 ~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (233)
                      +|+++++|-+.+-    +..+..+..   .+  +++.|--|.+|.+|  +|++.+++  .+.+++.-. ....  .-...
T Consensus       163 ~~~~~~vD~~q~~----g~~~id~~~---~d--~~~~s~~K~~gp~G--~g~l~~~~--~~~~~~~~~-~~p~--~~~~~  226 (361)
T 3m5u_A          163 TKTPLIVDASSDF----FSRKVDFSN---IA--LFYGGVQKNAGISG--LSCIFIRK--DMLERSKNK-QIPS--MLNYL  226 (361)
T ss_dssp             CSSCEEEECGGGT----TSSCCCCTT---EE--EEEEETTTTSSCTT--CEEEEEEH--HHHHHHHTC-CCCG--GGCHH
T ss_pred             cCCEEEEEccccc----CCCCCCccc---CC--EEEEechhccCCCc--cEEEEEcH--HHHhhhcCC-CCCc--eeehH
Confidence            4889999988775    222223322   22  67889999998888  68888876  333211000 0000  00001


Q ss_pred             hh--hhhccCcc-hHH-HHHHHHhhhcHHHH--HHHHHHHHHHHHHHHHHHhhcCCCc-ccccCCC--ccEEEEEecCCC
Q 047983           90 DY--LLLSESVY-TTV-GAVPQILEKTEEEF--FSKITDILREAADICCDRLKEIPCI-TCPKKPE--GSMFVMYCGSED  160 (233)
Q Consensus        90 ~~--~~~~~~~~-~~~-~~~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~~--~g~~~~~~~~~~  160 (233)
                      ..  .....+++ ... .++...++- ..+.  ++++.++.++..+++++.|++++++ ..+..++  +...+.      
T Consensus       227 ~~~~~~~~~~Tp~v~~i~~l~~al~~-l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivs------  299 (361)
T 3m5u_A          227 THAENQSLFNTPPTFAIYMFNLEMDW-LLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVS------  299 (361)
T ss_dssp             HHHHTTTCSSCCCHHHHHHHHHHHHH-HHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEE------
T ss_pred             HHhhcCCCCCCccHHHHHHHHHHHHH-HHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEE------
Confidence            00  11111222 222 333333321 1223  6777888889999999999888755 2222221  222233      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                         +.++.  ..++  +. .+...|.++||.+.+|..-  .+.+|+|+..  +.++++.+++.|+++.+++
T Consensus       300 ---f~~~~--~~~~--~~-~~~~~L~~~gI~~~~g~~~--~g~iRiS~~~~~t~edId~l~~al~~~~~~~  360 (361)
T 3m5u_A          300 ---FNIAK--NKDL--EP-LFVKEAEEAGMIGLKGHRI--LGGIRASIYNALNLDQVKTLCEFMKEFQGKY  360 (361)
T ss_dssp             ---EEESS--CTTH--HH-HHHHHHHHTTEECCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             ---EECCC--chhh--hH-HHHHHHHHCCCEEecCCCc--cCeEEEEccCCCCHHHHHHHHHHHHHHHHhc
Confidence               22331  0011  33 4456778889999887542  2569999996  7999999999999988764

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=97.97  E-value=6.3e-05  Score=66.06  Aligned_cols=201  Identities=12%  Similarity=0.045  Sum_probs=98.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcccccccc--CCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVF--GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++|++||+++++|++|+...... ...+-.++  ..-|  .++.|..|. +..-...+++...+. +.      + 
T Consensus       218 ~~Ia~ia~~~gi~l~VD~A~G~~~~~~-~~l~~~a~~~~~AD--~~v~S~HK~-l~a~~~~~~l~~rd~-~~------~-  285 (450)
T 3bc8_A          218 EELAVICANYDIPHVVNNAYGLQSSKC-MHLIQQGARVGRID--AFVQSLDKN-FMVPVGGAIIAGFNE-PF------I-  285 (450)
T ss_dssp             HHHHHHHHHHTCCEEEECTTTTTCHHH-HHHHHHHHHHSCCC--EEEEEHHHH-HSCCSSCEEEEESCH-HH------H-
T ss_pred             HHHHHHHHHCCCeEEEECCCchhhhhh-HhHHHHHhcccCCC--EEEECCccC-CCchhccEEEEecCH-HH------H-
Confidence            378999999999999999999643211 11111222  2212  466789998 555555677776552 22      2 


Q ss_pred             hhhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCCc--cEEE
Q 047983           79 FHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP---CITCPKKPEG--SMFV  153 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~--g~~~  153 (233)
                             .++........+.++.......++. .+.+-+.+..+...+..+++.+.|++++   +..+...+.-  ...+
T Consensus       286 -------~~~~~~~~g~~s~SpsL~l~~~l~~-~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~  357 (450)
T 3bc8_A          286 -------QDISKMYPGRASASPSLDVLITLLS-LGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAM  357 (450)
T ss_dssp             -------HHHHHHSCSCBCSHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEE
T ss_pred             -------HHHHHHhhcCCcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCccee
Confidence                   2222221111111122233333322 2333444455555566666666665544   4433222211  1112


Q ss_pred             EEecCCCcccccccccccCCCCChHHHHHHHH--hccCEEEEC--------Cccc---C------CCCcEEEEee--cCH
Q 047983          154 MYCGSEDKCLLKLNYSLLEGINSDTEFALKLA--KEESIIVLP--------GITV---G------LKDWLRITFA--VEP  212 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll--~~~gi~v~p--------g~~f---~------~~~~~Rl~~~--~~~  212 (233)
                      .           ++.-......|..+....+.  .-.|..+.+        |..|   +      +..++=+.++  .++
T Consensus       358 ~-----------l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~  426 (450)
T 3bc8_A          358 T-----------LKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKM  426 (450)
T ss_dssp             E-----------CTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCH
T ss_pred             e-----------cccccccccCCCceeEEEecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCH
Confidence            2           21100000112233333332  223444441        2233   2      1355544444  389


Q ss_pred             HHHHHHHHHHHHHHHHHhhc
Q 047983          213 SAFEIGLGRMKAFYYRHAKK  232 (233)
Q Consensus       213 ~~l~~~~~~l~~~l~~~~~~  232 (233)
                      ++++..+++|+++.++++++
T Consensus       427 ~di~~l~~~L~~~~~~~~~~  446 (450)
T 3bc8_A          427 QDVDLFIKRLDKCLNIVRKE  446 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            99999999999998877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	233
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	2e-25
d2hoxa1	425	c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ	1e-22
d1xi9a_	395	c.67.1.1 (A:) Putative alanine aminotransferase {P	3e-22
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	8e-21
d1bw0a_	412	c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try	7e-18
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	1e-17
d1wsta1	403	c.67.1.1 (A:13-415) Multiple substrate aminotransf	2e-13
d1o4sa_	375	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	1e-12
d1w7la_	418	c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas	9e-12
d1m7ya_	431	c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy	4e-11
d1iaya_	428	c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy	9e-10
d2r5ea1	418	c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans	1e-09
d1yaaa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak	3e-08
d1ajsa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig	1e-07
d1u08a_	382	c.67.1.1 (A:) Putative methionine aminotransferase	3e-07
d1c7na_	394	c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax	4e-07
d2q7wa1	396	c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT	6e-07
d1d2fa_	361	c.67.1.3 (A:) Modulator in mal gene expression, Ma	2e-06
d7aata_	401	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi	4e-06
d3tata_	397	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	7e-05
d2ay1a_	394	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	1e-04
d1v2da_	368	c.67.1.1 (A:) Glutamine aminotransferase {Thermus	2e-04
d1fg7a_	354	c.67.1.1 (A:) Histidinol-phosphate aminotransferas	2e-04
d2gb3a1	389	c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog	4e-04

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score =  100 bits (249), Expect = 2e-25
 Identities = 38/227 (16%), Positives = 86/227 (37%), Gaps = 31/227 (13%)

Query: 1   FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP--VLTLGSISKRWIVPGWR 58
             I +   + G+ V++DE+Y  +++ +   + +G          +     +K + + GWR
Sbjct: 186 RAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWR 245

Query: 59  LGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFS 118
           +G+L    P                +          + +V T          +  ++   
Sbjct: 246 VGFLAGPVPL---------------VKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQ 290

Query: 119 KITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDT 178
           ++     E      D L  +P + CPK P+G+ ++               S+ +   S  
Sbjct: 291 EMLAAFAERRRYMLDALNAMPGLECPK-PDGAFYMFP-------------SIAKTGRSSL 336

Query: 179 EFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAF 225
           +F  +L  +  +  +PG   G  D +R+++A +    + G+ R++ F
Sbjct: 337 DFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKF 383

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

 Score = 93.2 bits (231), Expect = 1e-22
 Identities = 29/215 (13%), Positives = 69/215 (32%), Gaps = 10/215 (4%)

Query: 12  IMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL 71
           ++     +Y  + +   H+ P+         + L ++SK     G R GW +  D +   
Sbjct: 216 VIKGCKSIYDMVYYWP-HYTPI--KYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYN 272

Query: 72  QDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADIC 131
             L     ++           L S  V   V A+ +  + T  +  +     LRE     
Sbjct: 273 NLLNYMTKNTEGTPRETQ---LRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI 329

Query: 132 CDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESII 191
              L +    +  + P+      +           +Y+ ++    + +   +  +   I 
Sbjct: 330 TALLDQSDRFSYQELPQSEYCNYFRRMRPP---SPSYAWVKCEWEEDKDCYQTFQNGRIN 386

Query: 192 VLPGITVGL-KDWLRITFAVEPSAFEIGLGRMKAF 225
              G+       ++R++       F+  +  +K  
Sbjct: 387 TQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDM 421

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 91.5 bits (226), Expect = 3e-22
 Identities = 48/225 (21%), Positives = 81/225 (36%), Gaps = 26/225 (11%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           I     +  I VI+DE+Y  + +   H  P  +    VPV+ +  +SK +   GWRLG++
Sbjct: 191 ILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKD-VPVIVMNGLSKVYFATGWRLGYM 249

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
              DP   L ++  A      + +             T              ++  +   
Sbjct: 250 YFVDPENKLSEVREAIDRLARIRL----------CPNTPAQFAAIAGLTGPMDYLKEYMK 299

Query: 123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
            L+E  D    RL EIP I+   KP+G+ ++           K+         +D EF L
Sbjct: 300 KLKERRDYIYKRLNEIPGISTT-KPQGAFYIF---------PKIEVG---PWKNDKEFVL 346

Query: 183 KLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAF 225
            +     ++ + G   G       R  F       E  + R + F
Sbjct: 347 DVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKF 391

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score = 87.5 bits (216), Expect = 8e-21
 Identities = 36/223 (16%), Positives = 74/223 (33%), Gaps = 30/223 (13%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           +     +    +++DE+Y HL++   HF P  V       LT+   +K + + GWR+G+ 
Sbjct: 189 LARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPE--HTLTVNGAAKAFAMTGWRIGYA 246

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
               P  +++ +      S +    +  +                  ++    F     +
Sbjct: 247 CG--PKEVIKAMASVSRQSTTSPDTIAQW----------ATLEALTNQEASRAFVEMARE 294

Query: 123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
             R   D+  + L  +       +P G+ +V+                   I  D   A 
Sbjct: 295 AYRRRRDLLLEGLTALGLKAV--RPSGAFYVLMD--------------TSPIAPDEVRAA 338

Query: 183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAF 225
           +   E  + V+PG        +R+++A         L R    
Sbjct: 339 ERLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARV 381

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 79.5 bits (194), Expect = 7e-18
 Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 19/182 (10%)

Query: 49  SKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQI 108
           +K  +VPGWRLGWL+  DP+G              L       +L+         A+ + 
Sbjct: 249 AKNLVVPGWRLGWLLYVDPHG---------NGPSFLEGLKRVGMLVCGPCTVVQAALGEA 299

Query: 109 LEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNY 168
           L  T +E   +I   + E+A    + + E   +     P G+M++M          +++ 
Sbjct: 300 LLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTM-PRGAMYLM---------SRIDL 349

Query: 169 SLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYR 228
                I +D EF  KL +EE++ VLPG       + R+T       +   + R+KAF  R
Sbjct: 350 EKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQR 409

Query: 229 HA 230
           HA
Sbjct: 410 HA 411

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 78.7 bits (193), Expect = 1e-17
 Identities = 35/226 (15%), Positives = 80/226 (35%), Gaps = 31/226 (13%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPM-GVFGSIVPVLTLGSISKRWIVPGWRLGW 61
           I +   +  ++VI+DEVY H ++ +     +  + G     +T+   SK + + GWRLG+
Sbjct: 184 IADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGF 243

Query: 62  LVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKIT 121
           +               +  +  +                       + ++   +   ++ 
Sbjct: 244 VAAPSWIIERMVKFQMYNATCPVTFIQYAA-------------AKALKDERSWKAVEEMR 290

Query: 122 DILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFA 181
                   +   RL          KP+G+ ++                + +   +  +F+
Sbjct: 291 KEYDRRRKLVWKRL--NEMGLPTVKPKGAFYIF-------------PRIRDTGLTSKKFS 335

Query: 182 LKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAF 225
             + KE  + V+PG   G   + ++RI++A      E  + RM+  
Sbjct: 336 ELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERV 381

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

 Score = 66.6 bits (161), Expect = 2e-13
 Identities = 47/236 (19%), Positives = 86/236 (36%), Gaps = 35/236 (14%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           + E   +   +++ D  Y  L +      P+  F     V+ LG+ SK  + PG+R+GW+
Sbjct: 196 LLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSK-ILAPGFRIGWV 254

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
                     ++        +            E+     G + + + K  E +  +   
Sbjct: 255 AAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVEN-----GYLDEHIPKIIEFYKPRR-- 307

Query: 123 ILREAADICCDRLKE-IPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFA 181
                 D   + L+E +P      KPEG MFV               +L EGI  DT+  
Sbjct: 308 ------DAMLEALEEYMPEGVEWTKPEGGMFVR-------------VTLPEGI--DTKLM 346

Query: 182 LKLAKEESIIVLPGITVGL----KDWLRITFA-VEPSAFEIGLGRMKAFYYRHAKK 232
           ++ A  + +  +PG    +    K+ +R+ F  V       G+ R+        K+
Sbjct: 347 MERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEMKR 402

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

 Score = 63.9 bits (154), Expect = 1e-12
 Identities = 38/223 (17%), Positives = 79/223 (35%), Gaps = 36/223 (16%)

Query: 3   IEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
           +    KK    +I+DEVY  LV+ +     + V      ++ +   SK   + GWR+G+ 
Sbjct: 186 LVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGY- 244

Query: 63  VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
                             S  +   +      + S   TV     +     +  +   T 
Sbjct: 245 ---------------LISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTF 289

Query: 123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
             R+   +   +   +  +    +PEG+ ++           K+          D +F  
Sbjct: 290 KERKNFVVERLKKMGVKFV----EPEGAFYLF---------FKVR-------GDDVKFCE 329

Query: 183 KLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAF 225
           +L +E+ + ++PG       ++R++FA         L R++ F
Sbjct: 330 RLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDF 372

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (148), Expect = 9e-12
 Identities = 29/225 (12%), Positives = 69/225 (30%), Gaps = 19/225 (8%)

Query: 9   KLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGWLVTSDP 67
           +  ++ I DEVY  +V+     + +     +    LT+GS  K +   GW++GW++  D 
Sbjct: 202 QHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDH 261

Query: 68  NGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREA 127
                         +    +   +   ++S      +  +      +     +       
Sbjct: 262 ----------IMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQ 311

Query: 128 ADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKE 187
                           P  P+GS F+      D      +         D  F   + K 
Sbjct: 312 RCRDHMIRSLQSVGLKPLIPQGSYFL-ITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKN 370

Query: 188 ESIIVLPGITVG-------LKDWLRITFAVEPSAFEIGLGRMKAF 225
           + ++ +P               ++R  F  + +  +    +++ +
Sbjct: 371 KGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKW 415

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

 Score = 59.6 bits (143), Expect = 4e-11
 Identities = 31/193 (16%), Positives = 66/193 (34%), Gaps = 31/193 (16%)

Query: 42  VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTT 101
           V  + S+SK   +PG+R+G + ++D   +     ++ F  +S   +              
Sbjct: 263 VHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLS---------- 312

Query: 102 VGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDK 161
                 + +K   + +        +          +   I+C       +F         
Sbjct: 313 ----AMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCL-NGNAGLFCW------- 360

Query: 162 CLLKL-NYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSA-FEI 217
             + + +        ++ E   K+  E  + + PG +       W R+ FA  P    ++
Sbjct: 361 --VDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 418

Query: 218 GLGRMKAF---YY 227
            + R+KAF   YY
Sbjct: 419 AMQRLKAFVGEYY 431

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

 Score = 55.8 bits (133), Expect = 9e-10
 Identities = 33/188 (17%), Positives = 68/188 (36%), Gaps = 28/188 (14%)

Query: 42  VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTT 101
           V  + S+SK   +PG+R+G + + + + +     ++ F  +S   +     +LS+  +  
Sbjct: 260 VHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVD 319

Query: 102 VGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDK 161
                          F + + +             E+  I C K     +F         
Sbjct: 320 --------------NFLRESAMRLGKRHKHFTNGLEVVGIKCLK-NNAGLFCW------- 357

Query: 162 CLLKLNYSLLE-GINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFA-VEPSAFEI 217
             + L   L E   +S+      +  +  + V PG +       W R+ FA ++    +I
Sbjct: 358 --MDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDI 415

Query: 218 GLGRMKAF 225
            L R++ F
Sbjct: 416 ALARIRRF 423

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

 Score = 55.2 bits (131), Expect = 1e-09
 Identities = 29/232 (12%), Positives = 67/232 (28%), Gaps = 19/232 (8%)

Query: 1   FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLG 60
                  K   + V  +     +     H     + G     +T+GS  K + + GW++G
Sbjct: 195 VVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIG 254

Query: 61  WLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKI 120
           W    +       +              +   +  E+    + +          E  +K 
Sbjct: 255 WAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKR 314

Query: 121 TDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEF 180
             +    A++             P  P+G  F++   S      K++ +       D  F
Sbjct: 315 DYMASFLAEVGM----------NPTVPQGGYFMVADWS--SLDSKVDLTQETDARKDYRF 362

Query: 181 ALKLAKEESIIVLPGITVGL-------KDWLRITFAVEPSAFEIGLGRMKAF 225
              + K   +  +P             +D++R  F  +    +     ++ +
Sbjct: 363 TKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKW 414

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

 Score = 51.1 bits (121), Expect = 3e-08
 Identities = 20/212 (9%), Positives = 49/212 (23%), Gaps = 37/212 (17%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVP------MGVFGSIVPVLTLGSISKRWIVPGWRLGW 61
                + + D  Y     G+           +    ++ PV    S +K   + G R+G 
Sbjct: 206 ASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGC 265

Query: 62  LVTSDP--NGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSK 119
              +                    +            +           L +   +    
Sbjct: 266 FHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVT 325

Query: 120 ITDILREAADICCDRLKEI--PCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSD 177
           ++  + +      D L ++  P        +  MF             L           
Sbjct: 326 MSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSF---------TGL----------T 366

Query: 178 TEFALKLAKEESIIVLPGITVGLKDWLRITFA 209
            +   +L +  ++ ++           R + A
Sbjct: 367 PQMVKRLEETHAVYLVASG--------RASIA 390

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

 Score = 49.2 bits (116), Expect = 1e-07
 Identities = 27/207 (13%), Positives = 49/207 (23%), Gaps = 34/207 (16%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVF---GSIVPVLTLGSISKRWIVPGWRLGWLVT 64
           K+  +    D  Y     GN       +         +    S SK + +   R+G L  
Sbjct: 213 KRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTV 272

Query: 65  SDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDIL 124
                      ++    I      +     +  V  T+      L          + D +
Sbjct: 273 VAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLS--DPELFHEWTGNVKTMADRI 330

Query: 125 REAADICCDRLKEIPCITCPK--KPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
                    RL+ +           +  MF             L          + +   
Sbjct: 331 LSMRSELRARLEALKTPGTWNHITDQIGMF---------SFTGL----------NPKQVE 371

Query: 183 KLAKEESIIVLPGITVGLKDWLRITFA 209
            L  ++ I +LP          RI   
Sbjct: 372 YLINQKHIYLLPSG--------RINMC 390

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

 Score = 48.2 bits (113), Expect = 3e-07
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 18/114 (15%)

Query: 114 EEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEG 173
            E +  + D  R+  DI  + L E      P   EG+ F++           ++YS +  
Sbjct: 281 PEHYLALPDFYRQKRDILVNALNESRLEILP--CEGTYFLL-----------VDYSAVST 327

Query: 174 INSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFAVEPSAFEIGLGRMK 223
           ++ D EF   L +E  +  +P             +R+ FA + S       R++
Sbjct: 328 LD-DVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLR 380

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

 Score = 47.5 bits (111), Expect = 4e-07
 Identities = 14/97 (14%), Positives = 20/97 (20%), Gaps = 16/97 (16%)

Query: 131 CCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESI 190
                   P I  P   EG+                                 +  +  I
Sbjct: 307 KDFFEVNHPEIKAPL-IEGTYLQWI-------------DFRALKMDHKAMEEFMIHKAQI 352

Query: 191 IVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAF 225
               G   G     + RI  A   S  +  L R+   
Sbjct: 353 FFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKA 389

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

 Score = 47.3 bits (111), Expect = 6e-07
 Identities = 24/203 (11%), Positives = 49/203 (24%), Gaps = 33/203 (16%)

Query: 11  GIMVIADEVYGHLVFGNTHFVP--MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPN 68
           G + + D  Y     G                 ++   S SK + +   R+G        
Sbjct: 205 GWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTL--VA 262

Query: 69  GILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAA 128
              + +  AF    +             +           L    E+  + +   ++   
Sbjct: 263 ADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMR 322

Query: 129 DICCDRLKEIPCITCPK--KPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAK 186
            +  + L+E            +  MF             L            E  L+L +
Sbjct: 323 QLFVNTLQEKGANRDFSFIIKQNGMF---------SFSGLT----------KEQVLRLRE 363

Query: 187 EESIIVLPGITVGLKDWLRITFA 209
           E  +  +           R+  A
Sbjct: 364 EFGVYAVASG--------RVNVA 378

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 176 SDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAF 225
            D      L ++E + ++PG T G   + ++R+      S  E G+  +   
Sbjct: 305 DDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINA 356

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

 Score = 44.6 bits (104), Expect = 4e-06
 Identities = 28/203 (13%), Positives = 50/203 (24%), Gaps = 34/203 (16%)

Query: 12  IMVIADEVYGHLVFGNTHFVPMG---VFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPN 68
           ++   D  Y     G+ +             + V+   S +K   + G R G        
Sbjct: 209 LLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTV--IC 266

Query: 69  GILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAA 128
              ++          L   M     ++ +   ++      L K        + D +    
Sbjct: 267 RDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMR 326

Query: 129 DICCDRLKEI--PCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAK 186
                 LK+            +  MF             L            E   +L K
Sbjct: 327 TQLVSNLKKEGSSHNWQHITDQIGMFCF---------TGLK----------PEQVERLTK 367

Query: 187 EESIIVLPGITVGLKDWLRITFA 209
           E SI +            RI+ A
Sbjct: 368 EFSIYMTKDG--------RISVA 382

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

 Score = 40.7 bits (94), Expect = 7e-05
 Identities = 23/206 (11%), Positives = 47/206 (22%), Gaps = 33/206 (16%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVP--MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTS 65
           K   ++   D  Y     G          +  + +P L   S SK + + G R+G L   
Sbjct: 203 KARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSV- 261

Query: 66  DPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILR 125
                 +  G       +   R         +         + L+ +      ++   + 
Sbjct: 262 -MCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRIL 320

Query: 126 EAADICCDRLKEI--PCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALK 183
                    L              +  MF                              +
Sbjct: 321 AMRQELVKVLSTEMPERNFDYLLNQRGMFSY-------------------TGLSAAQVDR 361

Query: 184 LAKEESIIVLPGITVGLKDWLRITFA 209
           L +E  + ++           R+  A
Sbjct: 362 LREEFGVYLIASG--------RMCVA 379

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 27/206 (13%), Positives = 53/206 (25%), Gaps = 33/206 (16%)

Query: 8   KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSI--VPVLTLGSISKRWIVPGWRLGWLVTS 65
           +K G + + D  Y     G           +     VL   S SK + +   R G L+  
Sbjct: 199 EKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLAL 258

Query: 66  DPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILR 125
             +   ++L       ++           ++ V T +      L          +   + 
Sbjct: 259 CADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTT--PELRADWMAELEAVRSGML 316

Query: 126 EAADICCDRLKEIPCITCPK--KPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALK 183
              +     L+++              MF           L              E   +
Sbjct: 317 RLREQLAGELRDLSGSDRFGFVAEHRGMF---------SRLGAT----------PEQVKR 357

Query: 184 LAKEESIIVLPGITVGLKDWLRITFA 209
           + +E  I ++           RI  A
Sbjct: 358 IKEEFGIYMVGDS--------RINIA 375

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 25/107 (23%)

Query: 123 ILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFAL 182
             R   D+    L+ +  +     PEG+ F+M                          A 
Sbjct: 282 GYRRRRDLLAGGLRAM-GLRVYV-PEGTYFLM-------------------AELPGWDAF 320

Query: 183 KLAKEESIIVLPGITVGL----KDWLRITFAVEPSAFEIGLGRMKAF 225
           +L +E  + ++P     L    KD  R  F        + L R+   
Sbjct: 321 RLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRV 367

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 26/225 (11%), Positives = 57/225 (25%), Gaps = 39/225 (17%)

Query: 1   FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLG 60
             + E T+   I+V  +         +            +    L ++SK + + G R G
Sbjct: 167 RTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAI----LRTLSKAFALAGLRCG 222

Query: 61  WLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKI 120
           +                   +  +   +   +              Q L         + 
Sbjct: 223 F----------------TLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRER 266

Query: 121 TDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEF 180
              +    +     LKEIPC+        + +++                     + +  
Sbjct: 267 VAQIIAEREYLIAALKEIPCVEQVF-DSETNYILAR-----------------FKASSAV 308

Query: 181 ALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAF 225
              L  +  I+        L   LRIT        +  +  ++A 
Sbjct: 309 FKSLWDQGIILRDQNKQPSLSGCLRITVGT-REESQRVIDALRAE 352

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.6 bits (88), Expect = 4e-04
 Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 25/105 (23%)

Query: 131 CCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKE--- 187
              +  E   +    KP G+ ++           +L       +    EFA  +  +   
Sbjct: 294 TVLKKLEEHGLKRFTKPSGAFYIT---------AEL------PVEDAEEFARWMLTDFNM 338

Query: 188 --ESIIVLPGITVGL-----KDWLRITFAVEPSAFEIGLGRMKAF 225
             E+ +V P     L     K  +RI   +E       +  +   
Sbjct: 339 DGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEG 383

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	100.0
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	100.0
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	100.0
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.98
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.97
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.97
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.97
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.97
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.97
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.97
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.97
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.97
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.97
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.96
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.96
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.96
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.94
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.94
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.92
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.9
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.9
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.9
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.9
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.89
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.87
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.87
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.87
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.69
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.6
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.5
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.49
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.27
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.25
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.24
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.19
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.11
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.1
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.05
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.02
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.01
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.01
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	98.99
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	98.92
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	98.91
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	98.85
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	98.83
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	98.82
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	98.74
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	98.73
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	98.73
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	98.71
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	98.7
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	98.66
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	98.64
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	98.61
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	98.55
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	98.55
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	98.49
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	98.45
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	98.44
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	98.4
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	98.39
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	98.37
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	98.34
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	98.33
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	98.3
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	98.3
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	98.26
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	98.22
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	98.21
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	98.21
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	98.12
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	98.12
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	98.07
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	97.91
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	97.86
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	97.84
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	97.77
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	97.75
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	97.73
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	97.63
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	97.59
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	97.45
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	96.73
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	96.49
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	95.5

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=2.4e-33  Score=243.63  Aligned_cols=209  Identities=29%  Similarity=0.449  Sum_probs=163.7

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcccccc----ccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMG----VFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~----~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      +|+++|++||++||+||+|.++.|++..+.+..    ..+...++++++|+||.|++||+|+||+++++.  .......+
T Consensus       198 ~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~--~~~~~~~~  275 (412)
T d1bw0a_         198 DIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDP--HGNGPSFL  275 (412)
T ss_dssp             HHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECT--TCSCHHHH
T ss_pred             ccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCCCCcccccccch--hhcchhhh
Confidence            689999999999999999999999875543332    233456789999999999999999999999873  32211222


Q ss_pred             hhhhhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           78 FFHSISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                              ...........++.+.. ..++..+....++++.+.++.++++++.+.+.|.+..++.. ..|+||+|+|  
T Consensus       276 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~-~~p~gg~~l~--  344 (412)
T d1bw0a_         276 --------EGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAP-TMPRGAMYLM--  344 (412)
T ss_dssp             --------HHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEE-CCCCBTTEEE--
T ss_pred             --------hhhccccccccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhcCcee-cCCCCceEEE--
Confidence                    22222222222223332 33344443456789999999999999999999988667774 7899999999  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                             ++++.....+..++.+++.++|+++||.++||+.|+.++|+|||++.++++++++++||++++++++
T Consensus       345 -------~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~~~~e~l~eal~Rl~~~l~~~~  411 (412)
T d1bw0a_         345 -------SRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQRHA  411 (412)
T ss_dssp             -------EEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHHHHB
T ss_pred             -------EeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence                   8777665555667899999999999999999999999999999999999999999999999999885

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=100.00  E-value=7.2e-33  Score=239.12  Aligned_cols=199  Identities=17%  Similarity=0.434  Sum_probs=158.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCC--ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS--IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|+++|++||++||+||+|.++.+++..+.++....+  .+++|+++|+||.|++||+|+||+++++  .+++.   .  
T Consensus       187 ~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~--~~~~~---~--  259 (388)
T d1j32a_         187 AIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPV--PLVKA---A--  259 (388)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCH--HHHHH---H--
T ss_pred             hhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEECH--HHHHH---H--
Confidence            6899999999999999999999998877767665543  4689999999999999999999999987  44421   1  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                            .+.......+.+...| .+....+ ...++++++.++.++++++.+.+.|++++++.. ..|+||+|+|     
T Consensus       260 ------~~~~~~~~~~~~~~~q-~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~-~~p~gg~~l~-----  325 (388)
T d1j32a_         260 ------TKIQGHSTSNVCTFAQ-YGAIAAY-ENSQDCVQEMLAAFAERRRYMLDALNAMPGLEC-PKPDGAFYMF-----  325 (388)
T ss_dssp             ------HHHHHTTTCSCCHHHH-HHHHHHH-HSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBC-CCCCBTTEEC-----
T ss_pred             ------HHhhhhccccccHHHH-HHHhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEe-cCCCceEEEE-----
Confidence                  2222222223323333 3333333 234678999999999999999999999877775 7899999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                          ++++..    ..++.+++.++++++||.++||+.|+.++|+|+|++.++++++++++||+++++..
T Consensus       326 ----~~l~~~----~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~~~~e~l~~al~rl~~~l~~l  387 (388)
T d1j32a_         326 ----PSIAKT----GRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             ----CBCGGG----TCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             ----EECCCC----CCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence                555432    12578889999999999999999999999999999999999999999999999764

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=2.9e-32  Score=234.68  Aligned_cols=200  Identities=20%  Similarity=0.432  Sum_probs=156.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCC-ccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++|+++||+||+|+++.+++..+.++..+.. .+++|+++||||.|++||+|+||+++++  ++++.   .   
T Consensus       183 ~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~~~--~~~~~---~---  254 (388)
T d1gdea_         183 EIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPS--WIIER---M---  254 (388)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCH--HHHHH---H---
T ss_pred             HHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEeec--cchhh---h---
Confidence            6899999999999999999999998877767766654 5789999999999999999999999987  33321   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           .........+.+...+ .+.+.+++.. ..+++...++.++++++.+.+.|... ++. +..|+||+|+|     
T Consensus       255 -----~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~p~gg~fl~-----  321 (388)
T d1gdea_         255 -----VKFQMYNATCPVTFIQ-YAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLP-TVKPKGAFYIF-----  321 (388)
T ss_dssp             -----HHHHHTTTCSCCHHHH-HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-CCCCCBTTEEC-----
T ss_pred             -----hhccccccccccccch-hhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhc-ccc-ccCCCceEEEE-----
Confidence                 2222222222222222 4444445443 45788899999999999999999886 344 36899999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                          ++++..   + .++.+++.++++++||.++||+.|+.  ++|+|+|++.+.++++++++||.+++++++
T Consensus       322 ----~~l~~~---~-~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~~~e~l~~al~rL~~~l~e~k  386 (388)
T d1gdea_         322 ----PRIRDT---G-LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKERK  386 (388)
T ss_dssp             ----CBCGGG---T-CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             ----EECCCC---C-CCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHhcC
Confidence                555422   1 25778888999999999999999986  689999999989999999999999999875

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.98  E-value=4.9e-32  Score=234.39  Aligned_cols=201  Identities=25%  Similarity=0.444  Sum_probs=155.4

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++|+++||+||+|.++.+++... +...+...+++|+++||||.|++||+|+||+++++....+..  +.    
T Consensus       190 ~l~~~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~--~~----  262 (395)
T d1xi9a_         190 EILNIAGEYEIPVISDEIYDLMTYEGEHI-SPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSE--VR----  262 (395)
T ss_dssp             HHHHHHHHHTCCEEEECTTTTCBSSSCCC-CHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHH--HH----
T ss_pred             HHHhhhhhcCeeEEecccccccccccccc-chhhcCCCCCEEEEeCcchhcccchhhcEeeEecCHHHHHHH--HH----
Confidence            68999999999999999999999876443 444456668999999999999999999999987764333321  11    


Q ss_pred             hhhHHhhhhhhh--hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           82 ISLNMRMDDYLL--LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        82 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                          ........  .+.+...| .+....+. ..++|+++.++.+++|++.+.+.|++++.+.. ..|+||+|+|     
T Consensus       263 ----~~~~~~~~~~~~~~~~~q-~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~p~gg~~~~-----  330 (395)
T d1xi9a_         263 ----EAIDRLARIRLCPNTPAQ-FAAIAGLT-GPMDYLKEYMKKLKERRDYIYKRLNEIPGIST-TKPQGAFYIF-----  330 (395)
T ss_dssp             ----HHHHHHHHHTCCSCSHHH-HHHHHHHH-SCCHHHHHHHHHHHHHHHHHHHHHHTSTTEEC-CCCCBSSEEC-----
T ss_pred             ----HHHHHhhcCCCCcCHHHH-HHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHhCCCcee-cCCCeeEEEe-----
Confidence                11111122  23333333 33333333 34579999999999999999999999876664 7899999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~  228 (233)
                          ++++...   ..++.+++.++++++||.+.||+.|+.  ++|+|||++.+.++++++++||++++++
T Consensus       331 ----~~l~~~~---~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~~~e~l~eal~rl~~~l~e  394 (395)
T d1xi9a_         331 ----PKIEVGP---WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKE  394 (395)
T ss_dssp             ----CEECSCS---CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             ----EECCCCC---CCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence                6665321   225889999999999999999999986  7899999998999999999999999875

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=1.5e-31  Score=230.17  Aligned_cols=195  Identities=17%  Similarity=0.366  Sum_probs=146.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|+++.|++.+..+.. . ..+++|+++|+||.|++||+|+||+++++  ++++.   .   
T Consensus       187 ~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~-~-~~~~~i~~~s~SK~~~~~GlR~G~~~~~~--~~i~~---~---  256 (382)
T d1b5pa_         187 EALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGR-V-APEHTLTVNGAAKAFAMTGWRIGYACGPK--EVIKA---M---  256 (382)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGG-T-CTTTEEEEEESTTTTTCGGGCCEEEECCH--HHHHH---H---
T ss_pred             HHHHHHHHHcCeEEEEEccccceecCCCCCCHHH-c-CCCCEEEEecchhhccCcHhheEEEEECH--HHHHH---H---
Confidence            3789999999999999999999999876554443 2 34789999999999999999999999987  44421   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEK-TEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ..++.....+.+...+..+.+.+... ....+....++.++++++.+.+.+... ++. +..|+||+|+|     
T Consensus       257 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~-~~~p~gg~~~~-----  324 (382)
T d1b5pa_         257 -----ASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLK-AVRPSGAFYVL-----  324 (382)
T ss_dssp             -----HHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCC-BCCCSBTTEEE-----
T ss_pred             -----HHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhc-CCe-EecCCceEEEe-----
Confidence                 22333223333333332333333222 245788899999999999999999886 455 37899999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                          ++++  .   ...+...+.+.|.++||.+.||+.|+.++|+|+|++.++++++++++||.+++
T Consensus       325 ----~~~~--~---~~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~~~~e~l~~al~rl~~~L  382 (382)
T d1b5pa_         325 ----MDTS--P---IAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVL  382 (382)
T ss_dssp             ----EECT--T---TCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred             ----EeCC--C---CCCCHHHHHHHHHHCCEEEEeCcccCCCCeEEEEEcCCHHHHHHHHHHHHHhC
Confidence                5442  2   11356666667778899999999999999999999999999999999998753

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.97  E-value=7.8e-31  Score=229.17  Aligned_cols=201  Identities=19%  Similarity=0.325  Sum_probs=152.4

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccC----------CccCEEEEccCccccCCCCceEEEEEecCCCccc
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG----------SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL   71 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~----------~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~   71 (233)
                      +|+++|++||++||+||+|.++.|+++.+.++..+.          ..+++|+++|+||.|+++|+|+||+++++  +++
T Consensus       213 ~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~--~~i  290 (431)
T d1m7ya_         213 LLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSND--DMV  290 (431)
T ss_dssp             HHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESC--HHH
T ss_pred             cccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccch--hhh
Confidence            689999999999999999999999987666554332          24689999999999999999999999987  333


Q ss_pred             cccchhhhhhhhhHHhhhhhhhh-ccCcchHHHHHHHHhhhc--HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC
Q 047983           72 QDLGVAFFHSISLNMRMDDYLLL-SESVYTTVGAVPQILEKT--EEEFFSKITDILREAADICCDRLKEIPCITCPKKPE  148 (233)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  148 (233)
                      .             ......... ..+...+ .++++.+...  .++++.+.++.++++++.+.+.|++. ++.+ .+|+
T Consensus       291 ~-------------~~~~~~~~~~~~~~~~~-~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gi~~-~~p~  354 (431)
T d1m7ya_         291 V-------------AAATKMSSFGLVSSQTQ-HLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISC-LNGN  354 (431)
T ss_dssp             H-------------HHHHHHGGGSCCCHHHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEE-CCCC
T ss_pred             H-------------HHHHHHhcccccccccc-chhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcC-CcEE-ecCC
Confidence            2             111112122 2222222 3444443332  35789999999999999999999885 6664 7899


Q ss_pred             ccEEEEEecCCCccccccccccc-CCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeec-CHHHHHHHHHHHHH
Q 047983          149 GSMFVMYCGSEDKCLLKLNYSLL-EGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAV-EPSAFEIGLGRMKA  224 (233)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~-~~~~l~~~~~~l~~  224 (233)
                      ||+|+|         ++++.... ....++.+++.++++++||.++||+.|+.  .+|+|+|++. ++++++++++||++
T Consensus       355 gg~f~w---------~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a~~~e~~l~~al~rL~~  425 (431)
T d1m7ya_         355 AGLFCW---------VDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKA  425 (431)
T ss_dssp             SSSEEE---------EECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHH
T ss_pred             ceeEEE---------EECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeCcCCHHHHHHHHHHHHH
Confidence            999999         54432111 11223567888999999999999999986  6899999986 78899999999999


Q ss_pred             HHHHH
Q 047983          225 FYYRH  229 (233)
Q Consensus       225 ~l~~~  229 (233)
                      ++++|
T Consensus       426 ~l~~~  430 (431)
T d1m7ya_         426 FVGEY  430 (431)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99987

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=4.7e-31  Score=226.20  Aligned_cols=188  Identities=22%  Similarity=0.410  Sum_probs=148.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++|+++||+||+|.++.+++.....+...+..+++|+++|+||.|++||+|+||+++++  ..+          
T Consensus       185 ~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~--~~~----------  252 (375)
T d1o4sa_         185 GLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSE--KVA----------  252 (375)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCH--HHH----------
T ss_pred             HHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccccccccccc--cch----------
Confidence            68999999999999999999999887666555556778999999999999999999999999998  333          


Q ss_pred             hhhHHhhhhhhh-hccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           82 ISLNMRMDDYLL-LSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        82 ~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                          ..+..... .+....... ......    .+.+....++.++++++.+.+.|++. ++.+ ..|+||+|+|     
T Consensus       253 ----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~r~~~~~~~l~~~-g~~~-~~p~gg~f~~-----  317 (375)
T d1o4sa_         253 ----TAVSKIQSHTTSCINTVAQYAALKA----LEVDNSYMVQTFKERKNFVVERLKKM-GVKF-VEPEGAFYLF-----  317 (375)
T ss_dssp             ----HHHHHHHHHHTCSCCHHHHHHHHHH----TTCCCHHHHHHHHHHHHHHHHHHHHT-TCCC-CCCSBSSEEE-----
T ss_pred             ----hhhhhhhccccccccccchhhhhhh----cccchhhhHHHHHHHHHHHHHHHHhc-CceE-ecCCccEEEE-----
Confidence                22222212 222223322 222222    23345566788999999999999887 5664 7899999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~  227 (233)
                          ++++.       ++.+++.++|+++||.++||+.|+.++|+|||++.++++++++++||++++.
T Consensus       318 ----~~~~~-------~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         318 ----FKVRG-------DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             ----EECSS-------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred             ----EECCC-------CHHHHHHHHHHhCCEEEEEccccCCCCeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence                55542       4889999999999999999999999999999999999999999999999874

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.97  E-value=1.3e-30  Score=225.39  Aligned_cols=201  Identities=22%  Similarity=0.390  Sum_probs=155.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++||++||+||+|.++.+++....++...+..+++++++|+||.+ +||+|+||+++++  .+++.   .    
T Consensus       195 ~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~G~RiG~~i~~~--~~i~~---~----  264 (403)
T d1wsta1         195 KLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKIL-APGFRIGWVAAHP--HLIRK---M----  264 (403)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTT-CGGGCCEEEEECH--HHHHH---H----
T ss_pred             HHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEcccccee-cCcccccccccch--HHHHH---H----
Confidence            689999999999999999999999987777887777889999999999997 5999999999987  44421   1    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCCccEEEEEecCC
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKE-IPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                          .........+.+...+ .+.+.+.... .+.++++.++.++++++.+.+.|.+ ++....+..|+||+|+|     
T Consensus       265 ----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p~gg~~~~-----  334 (403)
T d1wsta1         265 ----EIAKQSIDLCTNTFGQ-AIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVR-----  334 (403)
T ss_dssp             ----HHHHHHHHSSCCHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEE-----
T ss_pred             ----HHHHhhhccccccchh-hhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCCCceeEEE-----
Confidence                2222222333333333 3444443333 5678999999999999999999987 43333357899999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----CCcEEEEeec-CHHHHHHHHHHHHHHHHHHhhc
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFAV-EPSAFEIGLGRMKAFYYRHAKK  232 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~Rl~~~~-~~~~l~~~~~~l~~~l~~~~~~  232 (233)
                          ++++.+    .  +.+.+.++|.++||.|+||+.|+.    .+|+|++++. +++++++++++|.++++++.++
T Consensus       335 ----~~~~~~----~--~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al~rl~~~l~~~~k~  402 (403)
T d1wsta1         335 ----VTLPEG----I--DTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEMKR  402 (403)
T ss_dssp             ----EECCTT----C--CTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----EECCCC----C--CHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhc
Confidence                665532    2  444556667788999999999974    5899999985 8999999999999999988764

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-31  Score=230.91  Aligned_cols=200  Identities=17%  Similarity=0.360  Sum_probs=153.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccC-CccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||++||+||+|.++.|++..+.++..+. ..+++|++.|+||.|++||+|+||+++++  .+++.   +   
T Consensus       195 ~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~~--~~~~~---l---  266 (418)
T d1w7la_         195 LVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPD--HIMKH---L---  266 (418)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEECCH--HHHHH---H---
T ss_pred             HHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCCcccccccch--hhhhh---h---
Confidence            689999999999999999999999987777777664 45789999999999999999999999988  34421   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhc------HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEE
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKT------EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVM  154 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~  154 (233)
                           .++......+.+...+ .+....+...      ..+++...++.++++++.+.+.|+++ ++.. ..|+||||+|
T Consensus       267 -----~~~~~~~~~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~-~~P~gg~f~~  338 (418)
T d1w7la_         267 -----RTVHQNSVFHCPTQSQ-AAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKP-LIPQGSYFLI  338 (418)
T ss_dssp             -----HHHHHTTTSCCCHHHH-HHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEE-EECSBSSEEE
T ss_pred             -----ccccccccccccchhh-HHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhc-CCcc-cCCCceeEEE
Confidence                 2333333333333333 3333333222      24688999999999999999999987 5664 7899999999


Q ss_pred             EecCCCccccccccc--------ccCCCCChHHHHHHHHhccCEEEECCcccCC-------CCcEEEEeecCHHHHHHHH
Q 047983          155 YCGSEDKCLLKLNYS--------LLEGINSDTEFALKLAKEESIIVLPGITVGL-------KDWLRITFAVEPSAFEIGL  219 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------~~~~Rl~~~~~~~~l~~~~  219 (233)
                               ++++..        ...+..++.+++.++|+++||.|+||+.|+.       ++|+|||++.+++++++++
T Consensus       339 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~~~~~l~~a~  409 (418)
T d1w7la_         339 ---------TDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMD  409 (418)
T ss_dssp             ---------EECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHHHH
T ss_pred             ---------EECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEEcCCHHHHHHHH
Confidence                     544211        1112234778999999999999999999974       5899999998999999999


Q ss_pred             HHHHHHH
Q 047983          220 GRMKAFY  226 (233)
Q Consensus       220 ~~l~~~l  226 (233)
                      +||+++.
T Consensus       410 ~rl~~~~  416 (418)
T d1w7la_         410 EKLRKWK  416 (418)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998875

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.97  E-value=1.5e-30  Score=227.25  Aligned_cols=202  Identities=21%  Similarity=0.311  Sum_probs=151.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcccccccc--------CCccCEEEEccCccccCCCCceEEEEEecCCCcccc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVF--------GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQ   72 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~--------~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~   72 (233)
                      ++|+++|++||++||+||+|.++.|++.++.++..+        ...++++++.|+||.|+++|+|+||++++++  .  
T Consensus       211 ~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~--~--  286 (428)
T d1iaya_         211 KSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFND--D--  286 (428)
T ss_dssp             HHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCH--H--
T ss_pred             chhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCccccccccccc--c--
Confidence            368999999999999999999999998776666443        2357899999999999999999999999762  2  


Q ss_pred             ccchhhhhhhhhHHhhhhhhhhc-cCcchHHHHHHHHhhhc--HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCc
Q 047983           73 DLGVAFFHSISLNMRMDDYLLLS-ESVYTTVGAVPQILEKT--EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEG  149 (233)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  149 (233)
                         +.        ..+......+ .+...+ .++++.+...  .++++++.++.++++++.+.+.|+.. ++.. .+|+|
T Consensus       287 ---l~--------~~~~~~~~~~~~~~~~~-~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~-gi~~-~~p~g  352 (428)
T d1iaya_         287 ---VV--------NCARKMSSFGLVSTQTQ-YFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKC-LKNNA  352 (428)
T ss_dssp             ---HH--------HHHHHHHTTSCCCHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCB-CCCSS
T ss_pred             ---hh--------hhhhhhhcccccccccc-cchhhhhhhhccccccccccccccchhHHHHHHHHHhC-CCEE-ecCCc
Confidence               22        3333332322 222333 3334443332  35789999999999999999999876 6664 78999


Q ss_pred             cEEEEEecCCCccccccccccc-CCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeec-CHHHHHHHHHHHHHH
Q 047983          150 SMFVMYCGSEDKCLLKLNYSLL-EGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAV-EPSAFEIGLGRMKAF  225 (233)
Q Consensus       150 g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~-~~~~l~~~~~~l~~~  225 (233)
                      |+|+|         ++++.... ....++.+++.++++++||.++||+.|+.  ++|+|+|++. +++.++++++||+++
T Consensus       353 g~f~w---------~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a~~~~~~l~~al~Rl~~~  423 (428)
T d1iaya_         353 GLFCW---------MDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRF  423 (428)
T ss_dssp             SSEEE---------EECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred             ceEEE---------EECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeCCCCHHHHHHHHHHHHHH
Confidence            99999         55432111 11223557788889999999999999986  6899999986 778899999999999


Q ss_pred             HHHH
Q 047983          226 YYRH  229 (233)
Q Consensus       226 l~~~  229 (233)
                      +..+
T Consensus       424 l~~~  427 (428)
T d1iaya_         424 VGVE  427 (428)
T ss_dssp             HHTT
T ss_pred             Hhhc
Confidence            8654

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.97  E-value=2.2e-30  Score=223.72  Aligned_cols=202  Identities=15%  Similarity=0.155  Sum_probs=153.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccC--CccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG--SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|+++|++||++||+||+|.++.+++..+.+.....  ..++++++.|+||.|+++|+|+||+++++.  .+.  +..  
T Consensus       188 ~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~--~i~--~~~--  261 (394)
T d1c7na_         188 KIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNP--DIR--ERF--  261 (394)
T ss_dssp             HHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCH--HHH--HHH--
T ss_pred             hhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccccccCh--hhh--hhh--
Confidence            689999999999999999999999876655544332  357899999999999999999999999883  221  111  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCCccEEEEEecC
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE-IPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~~  158 (233)
                            .........+ +...+..+.+.......+++.++.++.++++++.+.+.++. .+++.. ..|+||+|+|    
T Consensus       262 ------~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~p~g~~~~~----  329 (394)
T d1c7na_         262 ------TKSRDATSGM-PFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKA-PLIEGTYLQW----  329 (394)
T ss_dssp             ------HHHHHHTTCC-CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBC-CCCSBSSEEE----
T ss_pred             ------hhhhhhcccc-ccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhccccceee-cCCCceeEEE----
Confidence                  2222222221 22222223333322345688999999999999999999876 556664 7899999999    


Q ss_pred             CCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHHh
Q 047983          159 EDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~~  230 (233)
                           ++++  .. ++ ++.+++.++++++||.++||+.|+.  ++|+|||++.++++++++++||.+++++++
T Consensus       330 -----~~~~--~~-~~-~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~i~eal~rl~~~l~~Lk  394 (394)
T d1c7na_         330 -----IDFR--AL-KM-DHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK  394 (394)
T ss_dssp             -----EECG--GG-CC-CHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             -----EECC--CC-CC-CHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence                 5543  21 22 5788889999999999999999986  689999999899999999999999998763

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.97  E-value=1.2e-30  Score=227.00  Aligned_cols=200  Identities=19%  Similarity=0.356  Sum_probs=152.8

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcccccccc-CCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||++||+||+|.++.+++....++..+ +..++++++.|+||.|++||+|+||+++++  .+++.   +   
T Consensus       195 ~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~--~~i~~---~---  266 (418)
T d2r5ea1         195 VVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPE--ALLKN---L---  266 (418)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEESCH--HHHHH---H---
T ss_pred             HHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCcccccccccc--hhhhh---h---
Confidence            68999999999999999999999988666666554 446799999999999999999999999988  44421   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhh------cHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEE
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEK------TEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVM  154 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~  154 (233)
                           .+.......+.+.+.| .+++.++..      ..++|++++++.++++++.+.+.|+++ ++.. ..|+||||+|
T Consensus       267 -----~~~~~~~~~~~~~~~q-~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~-~~P~gg~f~~  338 (418)
T d2r5ea1         267 -----QMVHQNCVYTCATPIQ-EAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNP-TVPQGGYFMV  338 (418)
T ss_dssp             -----HHHHTTTTCSCCHHHH-HHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT-TCEE-EECSBSSEEE
T ss_pred             -----hhcccccccccccchh-hhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhc-CCcc-cCCCceeEEE
Confidence                 2222222333333333 333333322      235789999999999999999999998 6664 7899999999


Q ss_pred             EecCCCccccccccc-------ccCCCCChHHHHHHHHhccCEEEECCcccCC-------CCcEEEEeecCHHHHHHHHH
Q 047983          155 YCGSEDKCLLKLNYS-------LLEGINSDTEFALKLAKEESIIVLPGITVGL-------KDWLRITFAVEPSAFEIGLG  220 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------~~~~Rl~~~~~~~~l~~~~~  220 (233)
                               ++++..       ......++.+++.++++++||.++||+.|+.       ++|+|+|++.++++++++++
T Consensus       339 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~~~e~l~~a~~  409 (418)
T d2r5ea1         339 ---------ADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAE  409 (418)
T ss_dssp             ---------EECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECCSCHHHHHHHHH
T ss_pred             ---------EEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEecCCHHHHHHHHH
Confidence                     443210       0112235789999999999999999999975       47999999889999999999


Q ss_pred             HHHHHH
Q 047983          221 RMKAFY  226 (233)
Q Consensus       221 ~l~~~l  226 (233)
                      ||++++
T Consensus       410 rl~~~l  415 (418)
T d2r5ea1         410 ILRKWK  415 (418)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999876

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=2.8e-30  Score=224.69  Aligned_cols=202  Identities=22%  Similarity=0.387  Sum_probs=153.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++|+++||+||+|.++.|+++...+.......+++++++|+||. ++||+|+||+++++  ++++.   +   
T Consensus       206 ~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~-~~~G~RiG~~~~~~--~~i~~---l---  276 (420)
T d1vp4a_         206 KALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKV-LAPGLRIGMVAGSK--EFIRK---I---  276 (420)
T ss_dssp             HHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTT-TCGGGCEEEEECCH--HHHHH---H---
T ss_pred             hhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEeccccc-cccccccccccccc--hhhhh---h---
Confidence            378999999999999999999999988776666666677899999999998 56999999999987  44431   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCCccEEEEE
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKT-EEEFFSKITDILREAADICCDRLKE----IPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~  155 (233)
                           .+.......+.+...+ .+.+.++... ..+++++.++.++++++.+.+.|++    ++++.. ..|+||+|+| 
T Consensus       277 -----~~~~~~~~~~~~~~~q-~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~-~~p~gg~f~~-  348 (420)
T d1vp4a_         277 -----VQAKQSADLCSPAITH-RLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKW-VKSEGGLFIW-  348 (420)
T ss_dssp             -----HHHHHHHHSSCCHHHH-HHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEE-CCCSBSSEEE-
T ss_pred             -----hhhhhhccccCchhhh-hhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCcEE-ecCCceEEEE-
Confidence                 2333333333333333 4444444333 5678888999999999999888876    345654 7899999999 


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----CCcEEEEeec-CHHHHHHHHHHHHHHHHHHh
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFAV-EPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~Rl~~~~-~~~~l~~~~~~l~~~l~~~~  230 (233)
                              ++++.    +. ++.+ +.++|+++||.+.||+.|+.    .+|+|||++. ++++++++++||.++++++.
T Consensus       349 --------~~~~~----~~-d~~~-~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~~~~~e~l~~a~~rL~~~l~~~~  414 (420)
T d1vp4a_         349 --------LTLPE----GF-DTWE-MFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYG  414 (420)
T ss_dssp             --------EECCT----TC-CTTT-THHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             --------EECCC----CC-CHHH-HHHHHHHCCeEEEechhhCCCCCCCCEEEEEeCcCCHHHHHHHHHHHHHHHHHhh
Confidence                    66542    22 2333 34567788999999999984    4799999985 88999999999999999998


Q ss_pred             hcC
Q 047983          231 KKQ  233 (233)
Q Consensus       231 ~~~  233 (233)
                      +++
T Consensus       415 ~~~  417 (420)
T d1vp4a_         415 KEK  417 (420)
T ss_dssp             HHT
T ss_pred             Hhh
Confidence            654

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=1.4e-28  Score=211.64  Aligned_cols=195  Identities=21%  Similarity=0.263  Sum_probs=150.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||++||+||+|.++.+++..+...  ....++++++.|+||.|++||+|+||+++++  ..+     .   
T Consensus       182 ~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~--~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~--~~i-----~---  249 (389)
T d2gb3a1         182 RYLVEIAERHGLFLIVDEVYSEIVFRGEFASAL--SIESDKVVVIDSVSKKFSACGARVGCLITRN--EEL-----I---  249 (389)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGG--GSCCTTEEEEEESTTTTTCGGGCCEEEECSC--HHH-----H---
T ss_pred             HHHHhhcccCCEEEEEecccccccccccccccc--ccccccccccccccccccCcccceeeeeccc--hhH-----H---
Confidence            378999999999999999999999887544333  2344788999999999999999999999987  222     1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ...........+++... .+...++ ...+++++.+++.++++++.+.+.|++++... +..|+||+|+|     
T Consensus       250 -----~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~p~~g~~~~-----  317 (389)
T d2gb3a1         250 -----SHAMKLAQGRLAPPLLEQIGSVGLL-NLDDSFFDFVRETYRERVETVLKKLEEHGLKR-FTKPSGAFYIT-----  317 (389)
T ss_dssp             -----HHHHHHHHHSCCCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-BCCCSBSSEEE-----
T ss_pred             -----HHHhhhhhccccccccccccccccc-cccchhcccccccccccchhhhhhhhhhcccc-ccCCCceEEEE-----
Confidence                 22222222222223222 4444444 34578999999999999999999999986554 47899999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhc-----cCEEEECCcccCC-----CCcEEEEeecCHHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKE-----ESIIVLPGITVGL-----KDWLRITFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~gi~v~pg~~f~~-----~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                          ++++..      ++.+++.++|++     +||.+.||+.|+.     ++|+|||++.+++++++++++|.++++++
T Consensus       318 ----~~lp~~------~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~~~~~~l~~a~~~L~~~lk~f  387 (389)
T d2gb3a1         318 ----AELPVE------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMF  387 (389)
T ss_dssp             ----EECSSS------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             ----EeCCCC------CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHHh
Confidence                666532      478888888865     5899999999974     57999999989999999999999999876

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.1e-28  Score=210.40  Aligned_cols=200  Identities=17%  Similarity=0.278  Sum_probs=150.9

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|+++|++||+||+|.++.|++....++..... ++++++.|+||.|+++|+|+||+++++.  .... ...    
T Consensus       157 ~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~v~~~s~SK~~~~~g~R~g~~~~~~~--~~~~-~~~----  228 (361)
T d1d2fa_         157 IMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVAR-GDWALLTSGSKSFNIPALTGAYGIIENS--SSRD-AYL----  228 (361)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCC-SSEEEEECSHHHHTCGGGCCEEEEECSH--HHHH-HHH----
T ss_pred             hhhhhhhhhheeeeecccccccccccccccccccccc-cccccccccccccccccccceeeecchh--HHHH-HHh----
Confidence            6899999999999999999999998876666665544 7899999999999999999999988762  2111 111    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHH-hhhcHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCCccEEEEEecCC
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQI-LEKTEEEFFSKITDILREAADICCDRLKE-IPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                          ..+...  .+.+.+.+....+.+ ......++.++.+..+++|++.+.+.+.+ .+++.. ..|+||+|+|     
T Consensus       229 ----~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~p~gg~~~~-----  296 (361)
T d1d2fa_         229 ----SALKGR--DGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNW-QIPQSTYLAW-----  296 (361)
T ss_dssp             ----HHHHTT--SCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCC-CCCSBCSEEE-----
T ss_pred             ----hhcccc--cccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhcccccc-cccCceeEEE-----
Confidence                222221  122223322222222 11234578889999999999999888866 666664 7899999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l~~~  229 (233)
                          ++++..   ++ ++.+++.++++++||.|+||+.|+.  ++|+|+|++.+++++++++++|.+++++.
T Consensus       297 ----~~l~~~---~~-~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~~~e~l~~al~rl~~~l~~l  360 (361)
T d1d2fa_         297 ----LDLRPL---NI-DDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAV  360 (361)
T ss_dssp             ----EECGGG---CC-CHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             ----EEccCC---CC-CHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence                554321   22 5889999999999999999999985  68999999988999999999999999875

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=5.1e-29  Score=214.28  Aligned_cols=194  Identities=22%  Similarity=0.378  Sum_probs=151.8

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcccccccc-CCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++++++++.||+|..+.+.+....+.... ...+++|++.|+||.|+.||+|+||+++++  .+++.   +   
T Consensus       183 ~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~--~~~~~---~---  254 (382)
T d1u08a_         183 ALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPA--PISAE---I---  254 (382)
T ss_dssp             HHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCH--HHHHH---H---
T ss_pred             hhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhhccc--hhHHH---H---
Confidence            68899999999999999999999887555444333 345789999999999999999999999987  44432   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                           .........+.+...| .+++.+++.. ++++..+++.++++++.+.+.++.. ++. +.+|+||+|+|      
T Consensus       255 -----~~~~~~~~~~~~~~~q-~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-g~~-~~~p~gg~~~~------  319 (382)
T d1u08a_         255 -----RKVHQYLTFSVNTPAQ-LALADMLRAE-PEHYLALPDFYRQKRDILVNALNES-RLE-ILPCEGTYFLL------  319 (382)
T ss_dssp             -----HHHHHHHTSSCCHHHH-HHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSS-SCE-ECCCCBSSEEE------
T ss_pred             -----Hhhhcccccccccccc-cccccccccc-hHHHHHHHHHHHhhhhhhhhhhccC-CcE-EecCCceEEEE------
Confidence                 3334444444444444 4555555433 5789999999999999999998775 555 47899999999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----CCcEEEEeecCHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFAVEPSAFEIGLGRMKA  224 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~Rl~~~~~~~~l~~~~~~l~~  224 (233)
                         ++++  ..... ++.+++.++|+++||.++||+.|+.    .+|+|||++.++++++++++||++
T Consensus       320 ---~~~~--~~~~~-d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~~~e~l~~al~RL~~  381 (382)
T d1u08a_         320 ---VDYS--AVSTL-DDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ  381 (382)
T ss_dssp             ---EECT--TTCCS-CHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred             ---EecC--CCCCC-CHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHhC
Confidence               5544  32222 6889999999999999999999974    479999999899999999999975

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.94  E-value=2.2e-26  Score=195.64  Aligned_cols=185  Identities=22%  Similarity=0.313  Sum_probs=134.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|+++|++|++++|+||+|.+|.+.+......  ....+++|++.|+||.|++||+|+||+++++  +.+.         
T Consensus       168 ~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~--~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~--~~~~---------  234 (355)
T d1lc5a_         168 AIADRCKSLNINLILDEAFIDFIPHETGFIPA--LKDNPHIWVLRSLTKFYAIPGLRLGYLVNSD--DAAM---------  234 (355)
T ss_dssp             HHHHHHHHHTCEEEEECTTGGGSTTCCCSGGG--CTTCTTEEEEEESTTTTTCTTTCCEEEECCC--HHHH---------
T ss_pred             hhhhhccccccccccccceeeeeeeccccccc--ccccccceeecccccccccccccccceeccc--hhhh---------
Confidence            68899999999999999999988765443222  3456899999999999999999999999987  2221         


Q ss_pred             hhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           82 ISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                          ..+... ....+.+... .+....+  ...++..+.++.++++++++.+.|.+++++.  ..|.+|+|+|      
T Consensus       235 ----~~~~~~-~~~~~~~~~~~~~a~~~l--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~p~~~~f~~------  299 (355)
T d1lc5a_         235 ----ARMRRQ-QMPWSVNALAALAGEVAL--QDSAWQQATWHWLREEGARFYQALCQLPLLT--VYPGRANYLL------  299 (355)
T ss_dssp             ----HHHHHH-SCTTCSCHHHHHHHHHGG--GCHHHHHHHHHHHHHHHHHHHHHHHTSTTEE--ECCCSSSEEE------
T ss_pred             ----HHHHhh-cCCccccccccccccccc--cccchhHHHHHHHHHHHHHHHHHHhhcCCcE--ECCCCCEEEE------
Confidence                222211 1112223333 3333333  2456788899999999999999999987775  3578899999      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                         ++++.       ++.++. +.|.++||.|+||+.|+.  ++|+||+++ ++++.+.++++|+++|
T Consensus       300 ---~~~~~-------~~~~~~-~~L~~~gv~vr~~~~f~~~~~~~iRis~~-~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         300 ---LRCER-------EDIDLQ-RRLLTQRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVL  355 (355)
T ss_dssp             ---EEESC-------TTCCHH-HHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred             ---EECCC-------CHHHHH-HHHHHCCcEEEeCccCCCCCCCEEEEEeC-CHHHHHHHHHHHHHhC
Confidence               55542       244444 445677999999999975  689999997 5566777777777653

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=1e-26  Score=198.44  Aligned_cols=189  Identities=24%  Similarity=0.407  Sum_probs=142.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||+++|+||+|..+.+....+..  .....++.+++.|+||.++++|+|+||+++++  ++++.   .   
T Consensus       175 ~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~--~~~~~---~---  244 (368)
T d1v2da_         175 EAIARLARAHDLFLISDEVYDELYYGERPRRL--REFAPERTFTVGSAGKRLEATGYRVGWIVGPK--EFMPR---L---  244 (368)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTCBSSSCCCCH--HHHCTTTEEEEEEHHHHTTCGGGCCEEEECCT--TTHHH---H---
T ss_pred             HHHHHHHHHcCCeeeechhhhhhccccccccc--ccccccccceeecccccccccccccccccccc--cccch---h---
Confidence            36899999999999999999987766543322  23445788999999999999999999999988  44421   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEK-TEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           .+.......+.+...| .+.+..+.. ...++++..++.++++++.+.+.|+++ ++.. ..|+||+|+|     
T Consensus       245 -----~~~~~~~~~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~-~~p~g~~~~~-----  311 (368)
T d1v2da_         245 -----AGMRQWTSFSAPTPLQ-AGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRV-YVPEGTYFLM-----  311 (368)
T ss_dssp             -----HHHHHHHTSSCCHHHH-HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCE-ECCSBSSEEE-----
T ss_pred             -----hhhhhccccccccccc-cccccccccccchhhHHHHHHHHHHhhhhhhhhHHhc-CcEE-ecCCceeEEE-----
Confidence                 3334434444444444 333333333 345689999999999999999999988 5664 7899999999     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----CCcEEEEeecCHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFAVEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~Rl~~~~~~~~l~~~~~~l~~~l  226 (233)
                          ++++  .   .  +   +.++|+++||.++||+.|+.    ++|+|+|++.+++++++++++|++++
T Consensus       312 ----~~l~--~---~--~---~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         312 ----AELP--G---W--D---AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVV  368 (368)
T ss_dssp             ----EECT--T---C--C---HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred             ----EeCC--c---c--H---HHHHHHhCCEEEEechhhCCCCCCCCEEEEEecCCHHHHHHHHHHHHHhC
Confidence                5554  2   1  2   23468889999999999973    58999999988999999999999864

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.92  E-value=2.4e-25  Score=193.11  Aligned_cols=196  Identities=11%  Similarity=0.071  Sum_probs=140.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccc------cccCCccCEEEEccCccccCCCCceEEEEEecCCCcccccc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPM------GVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDL   74 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~------~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~   74 (233)
                      ++|+++|++++++||+||+|.++.|++....+.      ...+..+++|++.|+||.|+++|+|+||+++++  .+++.+
T Consensus       199 ~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~--~~~~~~  276 (412)
T d1yaaa_         199 VQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLAL--TKQAQN  276 (412)
T ss_dssp             HHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEEC--CSCTTH
T ss_pred             HHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEch--hhhhhH
Confidence            378999999999999999999999987543332      223556889999999999999999999999998  444321


Q ss_pred             chhhhhhhhhHHhhhhh-hhhccCcchHH-HHHHHHhhhc-----HHHHHHHHHHHHHHHHHHHHHHhhcCC--C-cccc
Q 047983           75 GVAFFHSISLNMRMDDY-LLLSESVYTTV-GAVPQILEKT-----EEEFFSKITDILREAADICCDRLKEIP--C-ITCP  144 (233)
Q Consensus        75 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~--~-~~~~  144 (233)
                      .-.  +.... ...... .....+++... .+++.++.+.     ..++++.+++.++++++.+.+.|++++  + +. +
T Consensus       277 ~~~--~~~~~-~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~-~  352 (412)
T d1yaaa_         277 KTI--KPAVT-SQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWD-H  352 (412)
T ss_dssp             HHH--HHHHH-HHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCT-H
T ss_pred             HHH--HHHHH-HHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc-e
Confidence            111  10000 111111 11222333333 4555554432     347789999999999999999998843  2 33 4


Q ss_pred             cCCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHHH
Q 047983          145 KKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRMK  223 (233)
Q Consensus       145 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l~  223 (233)
                      ..|+||||+|           +++        +.+++.++++++||.++||+        |++++. ++++++.+.++|.
T Consensus       353 ~~~~gG~F~~-----------~~l--------s~e~~~~L~~e~~V~~~~g~--------Ris~~g~~~~~i~~l~~ai~  405 (412)
T d1yaaa_         353 IVNQCGMFSF-----------TGL--------TPQMVKRLEETHAVYLVASG--------RASIAGLNQGNVEYVAKAID  405 (412)
T ss_dssp             HHHCCSSEEE-----------CCC--------CHHHHHHHHHHHCEECCTTS--------EEEGGGCCTTTHHHHHHHHH
T ss_pred             eCCCceEEEe-----------cCc--------CHHHHHHHHHhCCEEECCCC--------EEEeccCCHHHHHHHHHHHH
Confidence            6899999999           543        56789999999999999975        999985 7778888888888


Q ss_pred             HHHHHH
Q 047983          224 AFYYRH  229 (233)
Q Consensus       224 ~~l~~~  229 (233)
                      ++++.+
T Consensus       406 ~v~k~~  411 (412)
T d1yaaa_         406 EVVRFY  411 (412)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            887654

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.7e-23  Score=177.70  Aligned_cols=179  Identities=16%  Similarity=0.194  Sum_probs=123.5

Q ss_pred             HHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhhhhh
Q 047983            5 ETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISL   84 (233)
Q Consensus         5 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      ..+.+++.++|+||+|.+|.++...   ......++++++++||||.|++||+|+||+++++  +++             
T Consensus       170 ~~~~~~~~~~iidd~~~~f~~~~~~---~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~--~~i-------------  231 (354)
T d1fg7a_         170 LELTRGKAIVVADEAYIEFCPQASL---AGWLAEYPHLAILRTLSKAFALAGLRCGFTLANE--EVI-------------  231 (354)
T ss_dssp             HHHHTTTCEEEEECTTGGGSGGGCS---GGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECH--HHH-------------
T ss_pred             cccccccccccccccchhhcccccc---chhhcccccceEEeCCccccCCCccccccccccc--hhh-------------
Confidence            3445578999999999998755322   1223557899999999999999999999999987  333             


Q ss_pred             HHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCCccc
Q 047983           85 NMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCL  163 (233)
Q Consensus        85 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~  163 (233)
                       ..+..... ++.+.+.+..+.+ .+......+.....+.+.++++.+.+.+.+++++.. ..|.+|+|+|         
T Consensus       232 -~~l~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~-~~p~~~~f~~---------  299 (354)
T d1fg7a_         232 -NLLMKVIAPYPLSTPVADIAAQ-ALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQ-VFDSETNYIL---------  299 (354)
T ss_dssp             -HHHHHHSCSSCSCHHHHHHHHH-HTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEE-ECCCSSSEEE---------
T ss_pred             -hhhhhhcCccchhhHHHHHHHH-HHhhhccccccccchhhhhHHHHHHHHHHhCCCcce-eCCCCceEEE---------
Confidence             33333222 2223333323333 333445566777778889999999999999877654 5688999999         


Q ss_pred             ccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-CCcEEEEeecCHHHHHHHHHHHH
Q 047983          164 LKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-KDWLRITFAVEPSAFEIGLGRMK  223 (233)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~Rl~~~~~~~~l~~~~~~l~  223 (233)
                      ++++        ++.+ +.+.|.++||.|+|++.|+. ++|+|||++. +++.+.+++.|+
T Consensus       300 ~~~~--------~~~~-~~~~L~~~gIlvr~~~~~~~~~~~lRisigt-~ee~~~~l~aLk  350 (354)
T d1fg7a_         300 ARFK--------ASSA-VFKSLWDQGIILRDQNKQPSLSGCLRITVGT-REESQRVIDALR  350 (354)
T ss_dssp             EEET--------THHH-HHHHHHHTTEECEECTTSTTCTTEEEEECCC-HHHHHHHHHHHH
T ss_pred             EeCC--------CHHH-HHHHHHHCCcEEecCCCCCCCCCEEEEEeCC-HHHHHHHHHHHh
Confidence            6554        2444 45556688999999988854 7999999975 444455554443

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.90  E-value=3.8e-24  Score=184.63  Aligned_cols=189  Identities=15%  Similarity=0.035  Sum_probs=136.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcccccc---ccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMG---VFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~---~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++|+++|++|+++||+||+|.++.|++....+..   .....++++++.|+||.++++|||+||++++.  .+++.+.-.
T Consensus       198 ~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~--~~~~~~~~~  275 (401)
T d7aata_         198 KELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVIC--RDAEEAKRV  275 (401)
T ss_dssp             HHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEEC--SSHHHHHHH
T ss_pred             HHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeeccccceeecch--HHHHHHHHH
Confidence            3799999999999999999999999874432221   12345778999999999999999999999998  344311000


Q ss_pred             hhhhhhhHHhhhhh-hhhccCcchHH-HHHHHHhhhc-----HHHHHHHHHHHHHHHHHHHHHHhhcCCC---cccccCC
Q 047983           78 FFHSISLNMRMDDY-LLLSESVYTTV-GAVPQILEKT-----EEEFFSKITDILREAADICCDRLKEIPC---ITCPKKP  147 (233)
Q Consensus        78 ~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~  147 (233)
                        +     ...... .....+++.+. .+.+.++.+.     ...+.+..++.++++|+.+.+.|++++.   +. +..|
T Consensus       276 --~-----~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~~~~  347 (401)
T d7aata_         276 --E-----SQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQ-HITD  347 (401)
T ss_dssp             --H-----HHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCH-HHHH
T ss_pred             --H-----HHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc-eECC
Confidence              0     111111 11122333333 4455554433     3467888999999999999999988532   33 3679


Q ss_pred             CccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHHHHHH
Q 047983          148 EGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRMKAFY  226 (233)
Q Consensus       148 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l~~~l  226 (233)
                      +||||+|           +++        +.+++.++++++||.++||+        |||++. ++++++.+.++|.+++
T Consensus       348 ~~G~F~~-----------~~l--------s~e~~~~L~~e~gV~~~pg~--------Ris~a~~~~~~i~~la~ai~~v~  400 (401)
T d7aata_         348 QIGMFCF-----------TGL--------KPEQVERLTKEFSIYMTKDG--------RISVAGVASSNVGYLAHAIHQVT  400 (401)
T ss_dssp             CCSSEEE-----------CCC--------CHHHHHHHHHHHCEECCTTC--------EEEGGGCCTTTHHHHHHHHHHHH
T ss_pred             CCeEEEe-----------cCC--------CHHHHHHHHHhCCEEECCCc--------EEEeccCCHHHHHHHHHHHHHHh
Confidence            9999999           543        56778999999999999985        999986 8888888888888765

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.90  E-value=3.2e-24  Score=186.33  Aligned_cols=195  Identities=13%  Similarity=0.091  Sum_probs=131.9

Q ss_pred             HcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhhhhhHHhh
Q 047983            9 KLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISLNMRM   88 (233)
Q Consensus         9 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (233)
                      .+++.+|.||+|.+..|.     ++.  ...+++|++.||||.|++||||+||++++++ .+.+   .+        ..+
T Consensus       217 ~~~~~~I~DEaY~~~~f~-----~~~--~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~-~i~~---~~--------~~~  277 (425)
T d2hoxa1         217 IKGCKSIYDMVYYWPHYT-----PIK--YKADEDILLFTMSKFTGHSGSRFGWALIKDE-SVYN---NL--------LNY  277 (425)
T ss_dssp             STTCEEEEECTTCSTTTS-----CCC--SCBCCSEEEEEHHHHTSCGGGCCEEEEECCH-HHHH---HH--------HHH
T ss_pred             hhCCEEEEeccccCcccc-----chh--hhcCCeEEEEeCHHhccCcchheeeEEeCCH-HHHH---HH--------HHh
Confidence            468999999999763332     332  3457889999999999999999999988873 2322   11        333


Q ss_pred             hhhhhhccCcchHHHHHHHHhhh----------cHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEE--Ee
Q 047983           89 DDYLLLSESVYTTVGAVPQILEK----------TEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVM--YC  156 (233)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~--~~  156 (233)
                      ..+...+++...|.++++.+ +.          ...++++..++.+++|++.+.+.|++.+.+.....|.++++.+  ..
T Consensus       278 ~~~~~~~vs~~~Q~aa~~aL-~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~  356 (425)
T d2hoxa1         278 MTKNTEGTPRETQLRSLKVL-KEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRM  356 (425)
T ss_dssp             HHHHTSSCCHHHHHHHHHHH-HHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEE
T ss_pred             hccCcccCCHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeec
Confidence            44444555555554443333 21          1235778889999999999999998876544322343333221  00


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-CCcEEEEeecCHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-KDWLRITFAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~Rl~~~~~~~~l~~~~~~l~~~l~~  228 (233)
                      ..+.+..+++..+.     ++.+++.++|+++||.++||+.|+. ++|+|||+..++++++++++||++++++
T Consensus       357 ~~~~~~f~wl~~~~-----~~~~~~~~lL~e~gI~v~pGs~FG~~~~yvRisl~~~~e~ld~~l~rL~~~v~a  424 (425)
T d2hoxa1         357 RPPSPSYAWVKCEW-----EEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             ECCCCSEEEEEECS-----GGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHHHHHHHHHHHHHHTC
T ss_pred             cCCCcceeeeeCCC-----ChHHHHHHHHHhCCEEEEechhcCCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            01111111133322     3556678889999999999999986 6899999999999999999999999853

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.90  E-value=1.3e-23  Score=181.89  Aligned_cols=192  Identities=14%  Similarity=0.072  Sum_probs=139.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcccc---ccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVP---MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~---~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++|+++|++||++||+||+|.++.|++....+   .......++++++.|+||.++++|+|+||++++.  ...+.  ..
T Consensus       206 ~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~--~~~~~--~~  281 (412)
T d1ajsa_         206 KQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVA--KEPDS--IL  281 (412)
T ss_dssp             HHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEEC--SSHHH--HH
T ss_pred             HHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCccccccch--hHHHH--HH
Confidence            37999999999999999999999998743322   2223456789999999999999999999999998  33321  11


Q ss_pred             hhhhhhhHHhhhhhh-hhccCcchHH-HHHHHHhhhc-----HHHHHHHHHHHHHHHHHHHHHHhhcCCC---cccccCC
Q 047983           78 FFHSISLNMRMDDYL-LLSESVYTTV-GAVPQILEKT-----EEEFFSKITDILREAADICCDRLKEIPC---ITCPKKP  147 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~  147 (233)
                      +.+     ..+.... ....+++... .+++.++.+.     ..++++.+++.++++++.+.+.|++++.   +. +..+
T Consensus       282 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~-~i~~  355 (412)
T d1ajsa_         282 RVL-----SQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWN-HITD  355 (412)
T ss_dssp             HHH-----HHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCH-HHHH
T ss_pred             HHH-----HHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCee-eecC
Confidence            000     1111111 1111222222 4555554332     3467888999999999999999988532   22 3578


Q ss_pred             CccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHHHHHH
Q 047983          148 EGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRMKAFY  226 (233)
Q Consensus       148 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l~~~l  226 (233)
                      ++|||+|           ++.        +.+++.++++++||.++||+        |||++. ++++++.+.++|.+++
T Consensus       356 ~~G~F~~-----------~~l--------s~~~v~~L~~e~gV~~vpg~--------Ri~~ag~~~~~i~~~a~aI~~av  408 (412)
T d1ajsa_         356 QIGMFSF-----------TGL--------NPKQVEYLINQKHIYLLPSG--------RINMCGLTTKNLDYVATSIHEAV  408 (412)
T ss_dssp             CCSSEEE-----------CCC--------CHHHHHHHHHTTCEECCTTS--------EEEGGGCCTTTHHHHHHHHHHHH
T ss_pred             CCeEEEe-----------cCC--------CHHHHHHHHHhCCEEEeCCC--------eEEeccCCHHHHHHHHHHHHHHH
Confidence            8999999           543        56778899999999999985        999985 8889999999999998


Q ss_pred             HHH
Q 047983          227 YRH  229 (233)
Q Consensus       227 ~~~  229 (233)
                      ++.
T Consensus       409 ~~~  411 (412)
T d1ajsa_         409 TKI  411 (412)
T ss_dssp             HHC
T ss_pred             Hhc
Confidence            864

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=7.7e-24  Score=182.35  Aligned_cols=185  Identities=14%  Similarity=0.075  Sum_probs=134.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcccccc-c-cCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMG-V-FGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~-~-~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++|++|+++||+||+|.++.+++....+.. . .+..++++.+.|+||.|+++|+|+||+++++  ..++.   . 
T Consensus       195 ~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~--~~~~~---~-  268 (396)
T d2q7wa1         195 QTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVA--ADSET---V-  268 (396)
T ss_dssp             HHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEEC--SSHHH---H-
T ss_pred             HHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccCCCccccccch--hHHHH---H-
Confidence            3789999999999999999999999864433222 1 2345788999999999999999999999998  34432   1 


Q ss_pred             hhhhhhHHhhhhh-----hhhccCcchHH-HHHHHHhhhc-----HHHHHHHHHHHHHHHHHHHHHHhhcCCC---cccc
Q 047983           79 FHSISLNMRMDDY-----LLLSESVYTTV-GAVPQILEKT-----EEEFFSKITDILREAADICCDRLKEIPC---ITCP  144 (233)
Q Consensus        79 ~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~  144 (233)
                             ......     .....+++... .+...++...     ..++++.++++++++++.+.+.|++++.   +. +
T Consensus       269 -------~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~  340 (396)
T d2q7wa1         269 -------DRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFS-F  340 (396)
T ss_dssp             -------HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCT-H
T ss_pred             -------HHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc-e
Confidence                   111111     11112222222 4445544332     3578899999999999999999988532   33 3


Q ss_pred             cCCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHHH
Q 047983          145 KKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRMK  223 (233)
Q Consensus       145 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l~  223 (233)
                      ..+.+|+|.|           +++        +.+++.++++++||.++||+        |+|++. ++++++.+.++|.
T Consensus       341 ~~~~~G~F~~-----------~~l--------~~e~~~~L~~e~gV~~~~g~--------Ri~~a~l~~~~i~~~~~ai~  393 (396)
T d2q7wa1         341 IIKQNGMFSF-----------SGL--------TKEQVLRLREEFGVYAVASG--------RVNVAGMTPDNMAPLCEAIV  393 (396)
T ss_dssp             HHHCCSSEEE-----------CCC--------CHHHHHHHHHHHCEECCTTC--------EEEGGGCCTTTHHHHHHHHH
T ss_pred             ecCCCeEEEe-----------eCC--------CHHHHHHHHHhCCEEECCCC--------EEEecCCCHHHHHHHHHHHH
Confidence            5778999999           654        45778999999999999986        999986 8888888888887


Q ss_pred             HHH
Q 047983          224 AFY  226 (233)
Q Consensus       224 ~~l  226 (233)
                      +++
T Consensus       394 ~v~  396 (396)
T d2q7wa1         394 AVL  396 (396)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            753

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=8e-22  Score=166.08  Aligned_cols=172  Identities=19%  Similarity=0.240  Sum_probs=120.1

Q ss_pred             HHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhhhhh
Q 047983            5 ETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSISL   84 (233)
Q Consensus         5 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      +.+.++++++|+||+|.++.+...    .......+++++++|+||.|+++|+|+||+++++  .+      +       
T Consensus       161 ~~~~~~~~~ii~Dd~~~~~~~~~~----~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~--~~------i-------  221 (334)
T d2f8ja1         161 ERILKTGAFVALDEAYYEFHGESY----VDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASE--KF------I-------  221 (334)
T ss_dssp             HHHHTTTCEEEEECTTGGGTCCCC----GGGGGTCSSEEEEEESTTTSSCTTTCEEEEEECH--HH------H-------
T ss_pred             hccccceeEEeecccchhhccccc----ccccccCceEEEEecCccccchhhhhhhhcccch--HH------H-------
Confidence            345678999999999988654432    2223455899999999999999999999999987  33      3       


Q ss_pred             HHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCCccc
Q 047983           85 NMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCL  163 (233)
Q Consensus        85 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~  163 (233)
                       .++..... .+.+..++ .+...++  ...+++++.++.++++++.+.+.|+++ ++.+ .+|+|+ |+|         
T Consensus       222 -~~l~~~~~~~~~s~~~~-~~a~~~l--~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~-~~~~g~-f~~---------  285 (334)
T d2f8ja1         222 -DAYNRVRLPFNVSYVSQ-MFAKVAL--DHREIFEERTKFIVEERERMKSALREM-GYRI-TDSRGN-FVF---------  285 (334)
T ss_dssp             -HHHHHHSCTTCSCHHHH-HHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHHHHH-TCEE-CCCCSS-EEE---------
T ss_pred             -HHHHHhhcccccchhhh-hhccccc--ccccchhhHHHHHHHHHHHHHHHHHHC-CCeE-CCCCce-EEE---------
Confidence             34433322 33334444 3333333  246788999999999999999999998 5554 567665 678         


Q ss_pred             ccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHH
Q 047983          164 LKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKA  224 (233)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~  224 (233)
                      ++++.       ++.+.+.+.|.++||.|+++     .+|+|+|++. .++++.++++|++
T Consensus       286 ~~~~~-------~~~~~~~~~L~~~GI~vr~~-----~~~vRis~g~-~ee~~~l~~~l~~  333 (334)
T d2f8ja1         286 VFMEK-------EEKERLLEHLRTKNVAVRSF-----REGVRITIGK-REENDMILRELEV  333 (334)
T ss_dssp             EECCH-------HHHHHHHHHHHHTTEECEEE-----TTEEEEECCC-HHHHHHHHHHHHH
T ss_pred             EECCC-------CCHHHHHHHHHHCCCEECCC-----CCeEEEEcCC-HHHHHHHHHHHhc
Confidence            44442       25555666677889999763     4899999985 4455666666654

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.5e-23  Score=180.73  Aligned_cols=188  Identities=14%  Similarity=0.028  Sum_probs=132.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccc-cccc-cCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFV-PMGV-FGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~-~~~~-~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++|++|+++||+||+|.++.|++.... .+.. ....+++|++.|+||.|+++|+|+||+++++  ..++.+..+ 
T Consensus       196 ~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~--~~~~~~~~~-  272 (397)
T d3tata_         196 DAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMC--EDAEAAGRV-  272 (397)
T ss_dssp             HHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCCBCCEEEC--SSTTHHHHH-
T ss_pred             HHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCccccccccch--hHHHHHHHH-
Confidence            3789999999999999999999999864332 2222 2455789999999999999999999999988  344221111 


Q ss_pred             hhhhhhHHhhhhh-hhhccCcchHH-HHHHHHhhhc-----HHHHHHHHHHHHHHHHHHHHHHhhcCC-C--cccccCCC
Q 047983           79 FHSISLNMRMDDY-LLLSESVYTTV-GAVPQILEKT-----EEEFFSKITDILREAADICCDRLKEIP-C--ITCPKKPE  148 (233)
Q Consensus        79 ~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~-~--~~~~~~~~  148 (233)
                       .     ...... .....+++... .+++.++...     ..++++.++++++++++.+.+.|+... .  +. +..|.
T Consensus       273 -~-----~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~~~~~  345 (397)
T d3tata_         273 -L-----GQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFD-YLLNQ  345 (397)
T ss_dssp             -H-----HHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSCTT-HHHHC
T ss_pred             -H-----HHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceE-EEcCC
Confidence             0     111111 11122223332 4444444332     346777888899999999999997742 2  33 35789


Q ss_pred             ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHHHHH
Q 047983          149 GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRMKAF  225 (233)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l~~~  225 (233)
                      +|||+|           +++        +.+++.++++++||.+.||+        |||++. ++++++.+.++|.++
T Consensus       346 ~G~F~~-----------~~l--------s~e~~~~L~~e~~V~l~~g~--------Ri~~a~~~~~~i~~~~~ai~~v  396 (397)
T d3tata_         346 RGMFSY-----------TGL--------SAAQVDRLREEFGVYLIASG--------RMCVAGLNTANVQRVAKAFAAV  396 (397)
T ss_dssp             CSSBCC-----------CCC--------CHHHHHHHTTTTCEECCSSS--------CCBTTSCCTTTHHHHHHHHHHH
T ss_pred             CceEEe-----------cCc--------CHHHHHHHHHhCCEEeCCCC--------EEEeccCCHHHHHHHHHHHHHh
Confidence            999999           543        46678999999999999985        899976 788888888887765

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=2.4e-22  Score=172.67  Aligned_cols=188  Identities=16%  Similarity=0.045  Sum_probs=132.7

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccc--cCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGV--FGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~--~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++|+++|++|+++||+||+|.++.|++....++..  .....+++.+.|+||.++.+|+|+||++++.  ..++.+..+ 
T Consensus       192 ~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~--~~~~~~~~~-  268 (394)
T d2ay1a_         192 AEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALC--ADAATRELA-  268 (394)
T ss_dssp             HHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEEC--SSHHHHHHH-
T ss_pred             HHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCcccccchhhch--hHHHHHHHh-
Confidence            47999999999999999999999998754333322  2234678999999999999999999999988  333211111 


Q ss_pred             hhhhhhHHhhhhh-hhhccCcchHH-HHHHHHhhh-----cHHHHHHHHHHHHHHHHHHHHHHhhcCCC---cccccCCC
Q 047983           79 FHSISLNMRMDDY-LLLSESVYTTV-GAVPQILEK-----TEEEFFSKITDILREAADICCDRLKEIPC---ITCPKKPE  148 (233)
Q Consensus        79 ~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~  148 (233)
                       +     ...... .....+++... ..+..++.+     ...++++.++++++++++.+.+.|++++.   +. +..|+
T Consensus       269 -~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~~~~~  341 (394)
T d2ay1a_         269 -Q-----GAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFG-FVAEH  341 (394)
T ss_dssp             -H-----HHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTT-HHHHC
T ss_pred             -h-----hhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcee-eECCC
Confidence             0     111111 11122222222 334443332     23578888999999999999999988422   33 36789


Q ss_pred             ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec-CHHHHHHHHHHHHHH
Q 047983          149 GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV-EPSAFEIGLGRMKAF  225 (233)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~-~~~~l~~~~~~l~~~  225 (233)
                      ||||+|           +++        +.+++.++++++||.++||+        |||++. ++++++.+.+.|.++
T Consensus       342 ~G~F~~-----------~~l--------s~~~~~~L~~~~~V~~~~g~--------Ri~~a~l~~~~i~~l~~ai~~v  392 (394)
T d2ay1a_         342 RGMFSR-----------LGA--------TPEQVKRIKEEFGIYMVGDS--------RINIAGLNDNTIPILARAIIEV  392 (394)
T ss_dssp             CSSEEE-----------CCC--------CHHHHHHHHHHHCEECCTTC--------EEEGGGCCTTTHHHHHHHHHHH
T ss_pred             ceeEEe-----------cCc--------CHHHHHHHHHhCCEEecCCC--------EEEecCCCHHHHHHHHHHHHHh
Confidence            999999           654        56788999999999999975        999986 788888777777654

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.69  E-value=6.1e-18  Score=143.85  Aligned_cols=182  Identities=18%  Similarity=0.100  Sum_probs=103.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||+++|+||+|+...++.....+....+.   .+++.|+||.+  +|+|+||+++++  ++++.   +   
T Consensus       154 ~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~---di~~~S~sK~~--~g~~~G~i~~~~--~~i~~---~---  220 (366)
T d2aeua1         154 KKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGA---DLVVTSTDKLM--EGPRGGLLAGKK--ELVDK---I---  220 (366)
T ss_dssp             HHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTC---SEEEEETTSSS--SSCSCEEEEEEH--HHHHH---H---
T ss_pred             HHHHHHhccCcEEEEEecCccccccccccCCCHhhcCc---eEEEecccccc--cccceeEEEecH--HHHHH---H---
Confidence            37899999999999999999987775433222222222   37889999964  589999999998  45432   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhc----HHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccCCCccEEEEE
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKT----EEEFFSKITDILREAADICCDRLKEIPCIT-CPKKPEGSMFVMY  155 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~g~~~~~  155 (233)
                           .........+.++..+..++.. ++.-    .+++.++.++......+.+.......++.. ....+.+++|+| 
T Consensus       221 -----~~~~~~~g~~~~~~~~~a~~~a-L~tl~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  293 (366)
T d2aeua1         221 -----YIEGTKFGLEAQPPLLAGIYRA-LKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVI-  293 (366)
T ss_dssp             -----HHHHHTTTCBCCHHHHHHHHHH-HHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEE-
T ss_pred             -----HHHHhcccccCCHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHHHhhhhccccccccccCcccccCccchhc-
Confidence                 2222222233333323233333 2211    122222222222223333333333322221 112345677777 


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-CCcEEEEeec
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-KDWLRITFAV  210 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~Rl~~~~  210 (233)
                              ............++.+++.++++++||.++||..|+. ++++|++++.
T Consensus       294 --------~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~ip~~~~p~~~~~lRis~~~  341 (366)
T d2aeua1         294 --------KRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTS  341 (366)
T ss_dssp             --------EEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTS
T ss_pred             --------cCCCcceeecccCHHHHHHHHHHhCCEEEEECCCCCCCCCEEEEeccc
Confidence                    3222110001113668899999999999999999954 7899999986

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.60  E-value=6.2e-15  Score=126.09  Aligned_cols=192  Identities=14%  Similarity=0.107  Sum_probs=120.2

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccC-CccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|++||+++++||+|+-.+++....-.....+ ..+..|.++||||+||..|   |++++++  .+++  .+.   
T Consensus       198 ~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~G---g~v~~~~--~~i~--~l~---  267 (396)
T d2bwna1         198 EICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAASA--RMVD--AVR---  267 (396)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEECH--HHHH--HHH---
T ss_pred             hHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccccc---cccchhH--HHHH--HHH---
Confidence            789999999999999999999888754322222222 2345688999999999999   9999887  4443  122   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                           +..+.+...++.++..+++..+.++....+...+.++.++.+.+++.+.|..+ ++.. ....+... .      
T Consensus       268 -----~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~-~~~~spIv-p------  333 (396)
T d2bwna1         268 -----SYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPI-IDHGSHIV-P------  333 (396)
T ss_dssp             -----HHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCB-CCCSSSCE-E------
T ss_pred             -----hhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc-CCCc-CCCCCCEE-E------
Confidence                 22233333333333333333222222223445667888889999999999875 3321 22222222 1      


Q ss_pred             cccccccccccCCCCChHHHHHHHHhccCEEEECCcccC-C--CCcEEEEeec--CHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG-L--KDWLRITFAV--EPSAFEIGLGRMKAF  225 (233)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~--~~~~Rl~~~~--~~~~l~~~~~~l~~~  225 (233)
                         +.++.+.     .......++|+++||.+.+...-. +  ...+|+++..  +.++++.+++.|+++
T Consensus       334 ---v~ig~~~-----~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         334 ---VVIGDPV-----HTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             ---EECCCHH-----HHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             ---EEeCCHH-----HHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence               2243221     134555667888999987633211 1  4679999996  899999999988864

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=2.6e-13  Score=116.23  Aligned_cols=190  Identities=13%  Similarity=0.106  Sum_probs=117.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccC-CccCEEEEccCccccCC-CCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-SIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~-~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++|++||+.+|+||+++.+.++....-.....+ ..+..++++|+||.++. +|   |++.++.  ++++   .++ 
T Consensus       198 ~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~G---g~v~g~~--~~~~---~l~-  268 (401)
T d1fc4a_         198 GVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASG---GYTAARK--EVVE---WLR-  268 (401)
T ss_dssp             HHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC---EEEEECH--HHHH---HHH-
T ss_pred             HHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCCc---ccccCCH--HHHH---HHH-
Confidence            689999999999999999999888764332222222 12345889999999843 35   8988877  3442   110 


Q ss_pred             hhhhhHHhhhhhhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           80 HSISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                            +....+. ++.+.++..  ++.+.+   .......+.++.++++.+++.+.+...+. .. ..+++.+. .   
T Consensus       269 ------~~~~~~~-~s~~l~p~~~~aa~~~l---~~~~~~~~~~~~l~~~~~~~~~~l~~~g~-~~-~~~~~pIv-~---  332 (401)
T d1fc4a_         269 ------QRSRPYL-FSNSLAPAIVAASIKVL---EMVEAGSELRDRLWANARQFREQMSAAGF-TL-AGADHAII-P---  332 (401)
T ss_dssp             ------HHCHHHH-HSCCCCHHHHHHHHHHH---HHHHTCHHHHHHHHHHHHHHHHHHHHTTC-CB-CCSSSSEE-E---
T ss_pred             ------cCChhhh-hcCCCCHHHHHHHHhhh---cccccCHHHHHHHHHHHHHHHhhhcccCC-cc-CCCCCCEE-E---
Confidence                  1112222 233333332  223322   22233466789999999999999988633 22 23333332 2   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC--C--CCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG--L--KDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--~--~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                            +.+..+.      ....+.+.|.++||.+.+- .|+  +  ...+|+++..  ++++++.+++.|.++.+++
T Consensus       333 ------v~~~~~~------~a~~~~~~L~~~Gi~v~~i-~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~l  397 (401)
T d1fc4a_         333 ------VMLGDAV------VAQKFARELQKEGIYVTGF-FYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL  397 (401)
T ss_dssp             ------EEEECHH------HHHHHHHHHHHTTEECCEE-CTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             ------EEECCHH------HHHHHHHHHHHCCceEEeE-CCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence                  1133211      2234455566889998762 222  1  3569999985  8999999999999998775

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.1e-13  Score=117.84  Aligned_cols=189  Identities=14%  Similarity=0.065  Sum_probs=115.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||+++++||+|+..+++....-.....+. ...+.+.|+||.++.+|   |++.++.  .+.+.  +.   
T Consensus       187 ~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~-~~~~~~~t~~ka~g~~G---g~v~~~~--~~~~~--l~---  255 (383)
T d1bs0a_         187 AEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV-KPELLVVTFGKGFGVSG---AAVLCSS--TVADY--LL---  255 (383)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTC-CCSEEEEESSSTTSSCC---EEEEECH--HHHHH--HH---
T ss_pred             hHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCC-ccccccccccccccccc---cccccch--hHHHH--HH---
Confidence            37899999999999999999998887543222222232 34466789999999999   9999987  33321  11   


Q ss_pred             hhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           +....+. ++.+.++.. ++....++..........+.++.++.+++.+.|++++ +.. ...++.+ +.     
T Consensus       256 -----~~~~~~~-~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g-~~~-~~~~s~I-i~-----  321 (383)
T d1bs0a_         256 -----QFARHLI-YSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLP-FTL-ADSCSAI-QP-----  321 (383)
T ss_dssp             -----HHCHHHH-SSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSS-CEE-CSCCSSB-CC-----
T ss_pred             -----hhchhhh-hcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcC-Ccc-CCCCCCE-EE-----
Confidence                 1212222 232333322 2222222222234556778888999999999998874 321 2222221 11     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----CCcEEEEeec--CHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFAV--EPSAFEIGLGRMKAF  225 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~Rl~~~~--~~~~l~~~~~~l~~~  225 (233)
                          +.++.+.      ....+.+.|.++||.+.+.. |+.    ...+|+++..  ++++++.+++.|..+
T Consensus       322 ----v~~g~~~------~a~~~~~~L~~~Gi~v~~~~-~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         322 ----LIVGDNS------RALQLAEKLRQQGCWVTAIR-PPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             ----EEEESHH------HHHHHHHHHHHTTEECCEEC-TTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             ----EEECCHH------HHHHHHHHHHHCCceEEEEc-CCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence                1143221      33445566668899998732 321    3569999986  899999988887653

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=2.3e-11  Score=104.62  Aligned_cols=197  Identities=18%  Similarity=0.133  Sum_probs=109.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      .|.++|++||+++|.||+.+.+...|... .....+.++     +.+++|..+. |+.+|.+++++  ++++.   .   
T Consensus       223 ~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PD-----i~~~gK~l~g-G~P~~av~~~~--~i~~~---~---  288 (425)
T d1sffa_         223 RLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPD-----LTTFAKSIAG-GFPLAGVTGRA--EVMDA---V---  288 (425)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCS-----EEEECGGGGT-SSCCEEEEEEH--HHHTT---S---
T ss_pred             HHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCcc-----ceecccccCC-CcceEEEEEcH--HHHHh---h---
Confidence            58899999999999999999976665322 222223332     5579999654 89999999988  44421   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEE-EFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           .......+++.++...+++++.+ +.-.+ +..+...+.-..-++.+.+.+++.+.+.. ....|.++..     
T Consensus       289 -----~~~~~~~T~~gnpl~~aaa~a~L-~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~-vrg~Gl~~~i-----  356 (425)
T d1sffa_         289 -----APGGLGGTYAGNPIACVAALEVL-KVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGD-VRGLGAMIAI-----  356 (425)
T ss_dssp             -----CTTSBCCSSSSCHHHHHHHHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEE-EEEETTEEEE-----
T ss_pred             -----CCCCCCCCCCcCHHHHHHHHHHH-HHHHHhhhhhhhhhhhhhhhhhhhhhHhhCCceEE-EEccccEEEE-----
Confidence                 11111123333322222344333 22122 23333333333334444444555544332 3344444433     


Q ss_pred             CcccccccccccCCCCC--hHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHHhh
Q 047983          160 DKCLLKLNYSLLEGINS--DTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~~~  231 (233)
                           .+.........+  -...+.+.+.++||.+.++...+  +.+|++..  .++++++++++++++++++.++
T Consensus       357 -----~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~~~--n~i~~~PpL~it~~eid~~l~~l~~al~eikk  425 (425)
T d1sffa_         357 -----ELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYY--NVLRILVPLTIEDAQIRQGLEIISQCFDEAKQ  425 (425)
T ss_dssp             -----EEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTS--CEEEECCCTTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred             -----EEeccCccCCccHHHHHHHHHHHHHCCCEEeccCCCC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence                 111100000001  12334445557899998754333  67888754  4899999999999999998764

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.25  E-value=5e-12  Score=103.69  Aligned_cols=189  Identities=12%  Similarity=0.004  Sum_probs=105.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++|++|+++++.|++|..+..+........ .......+ +  ++|..+..|.+.|+++...  +.+.   ..    
T Consensus       153 ~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~-~~~~~~~~-~--~~~~~~~~g~~~~~~~~~~--~~~~---~~----  219 (343)
T d1m6sa_         153 EICTIAKEHGINVHIDGARIFNASIASGVPVKE-YAGYADSV-M--FCLSKGLCAPVGSVVVGDR--DFIE---RA----  219 (343)
T ss_dssp             HHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHH-HHHTCSEE-E--EESSSTTCCSSCEEEEECH--HHHH---HH----
T ss_pred             HHHHHHHhcCeEEEeccccccccccccccchhh-hccccccc-c--ccccccccccccccccccH--HHHh---hh----
Confidence            688899999999999999998765432211111 11111122 2  3333355667778888776  2321   11    


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCCc
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDK  161 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (233)
                          ...+.....+........+....    .........+...++...+.+.+.+++.... ..|.+++++|       
T Consensus       220 ----~~~~~~~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~-------  283 (343)
T d1m6sa_         220 ----RKARKMLGGGMRQAGVLAAAGII----ALTKMVDRLKEDHENARFLALKLKEIGYSVN-PEDVKTNMVI-------  283 (343)
T ss_dssp             ----HHHHHHHTCCCSSTHHHHHHHHH----HHHHSSTTHHHHHHHHHHHHHHHHHHTCBCC-GGGCCSSEEE-------
T ss_pred             ----HhhCcccccccchhHHHHHhhhh----hhhhhHHHHHHHHHHHHHhhhHHHHhccCcc-CCCCCceEEE-------
Confidence                22222222222222221211111    1111122233344555555555555444443 4566677888       


Q ss_pred             ccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHHh
Q 047983          162 CLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~~  230 (233)
                        +.++...     .+...+...|+++||.+.|..    .+++|++++.  ++++++++++.|++++++++
T Consensus       284 --~~~~~~~-----~~a~~l~~~L~~~Gi~v~~~~----~~~iRi~~~~~~t~edid~~v~~l~~v~~~~~  343 (343)
T d1m6sa_         284 --LRTDNLK-----VNAHGFIEALRNSGVLANAVS----DTEIRLVTHKDVSRNDIEEALNIFEKLFRKFS  343 (343)
T ss_dssp             --EECTTSS-----SCHHHHHHHHHHHTEECEEEE----TTEEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred             --EEeCCCc-----ccHHHHHHHHHHCCCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhC
Confidence              5554322     134444555668899998743    4789998874  89999999999999999873

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.24  E-value=4.2e-11  Score=102.34  Aligned_cols=187  Identities=12%  Similarity=0.033  Sum_probs=107.8

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|.||+...|...|... .....+.+  .   +-+++|..+..+..+|.+++++  ++.+.   .   
T Consensus       211 ~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~P--D---ivt~gK~l~gG~~p~~~v~~~~--~i~~~---~---  277 (404)
T d1z7da1         211 GVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKP--D---VILLGKALSGGHYPISAVLAND--DIMLV---I---  277 (404)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCC--S---EEEECGGGGTTSSCCEEEEECH--HHHTT---C---
T ss_pred             HHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCC--C---EEEEcccccCCCCCcccccchH--HHHcc---C---
Confidence            68899999999999999999886655321 22222333  2   4489999776558999999987  34321   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHH--HHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVYTTV--GAVPQILEK-TEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                           .......++  +.++..  ++.+. ++. ..++..+...+.-...++.+.+.+++.+.+.. +...|.+ +.   
T Consensus       278 -----~~~~~~~T~--~gnpl~~aaa~a~-L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-vrg~Gl~-~~---  344 (404)
T d1z7da1         278 -----KPGEHGSTY--GGNPLAASICVEA-LNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRD-VRGKGLL-CA---  344 (404)
T ss_dssp             -----CTTCCCCTT--TTCHHHHHHHHHH-HHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEE-EEEETTE-EE---
T ss_pred             -----CCCCcCcCC--CCCcchhhhhhhh-hhhhhcchhhhhhccchhHHHHHHHHHHhcCCCeEE-EEeeCcE-EE---
Confidence                 111111223  333333  33333 222 12233444444444444555555655543322 2333443 34   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                            +.+..+.     .....+...+.++||.+.|..    .+.+|++..  .+++++++++++|.+.++++
T Consensus       345 ------i~~~~~~-----~~~~~~~~~l~~~Gl~~~~~~----~~~ir~~Ppl~it~~~id~~~~~l~~alk~~  403 (404)
T d1z7da1         345 ------IEFKNEL-----VNVLDICLKLKENGLITRDVH----DKTIRLTPPLCITKEQLDECTEIIVKTVKFF  403 (404)
T ss_dssp             ------EEECTTT-----CCHHHHHHHHHHTTEECCEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ------EEEcCCc-----ccHHHHHHHHHhCCeEEecCC----CCEEEEECCcCCCHHHHHHHHHHHHHHHHhh
Confidence                  3333211     123334455667899987632    366888643  58999999999999999875

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.19  E-value=7e-11  Score=98.54  Aligned_cols=201  Identities=11%  Similarity=0.114  Sum_probs=104.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|+++|++||+++++|++|+....    +..+..++.   -+++.|++|.++.+| ++||+++++  .+++.  +....
T Consensus       160 ~~I~~ia~~~~i~livD~a~~~g~~----~~~~~~~g~---D~~~~S~~K~~~~~g-~~g~l~~~~--~~~~~--~~~~~  227 (364)
T d2e7ja1         160 KKIAKVCSEYDVPLLVNGAYAIGRM----PVSLKEIGA---DFIVGSGHKSMAASG-PIGVMGMKE--EWAEI--VLRRS  227 (364)
T ss_dssp             HHHHHHHHTTTCCEEEECTTTBTTB----CCCHHHHTC---SEEEEEHHHHSSCCS-SCEEEEECT--TTTTT--TTCBC
T ss_pred             hhheeccccccchhhccccchhhhh----hhccccccc---ceeeeccccccCCCC-CEEEEEECH--HHHHH--HHhhc
Confidence            4799999999999999999975322    122333332   278899999988877 799999987  44432  11000


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSED  160 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  160 (233)
                      .. .......+..............+.+  ....++++...+.+ ++++++.+.|++++.......|......+      
T Consensus       228 ~~-~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~------  297 (364)
T d2e7ja1         228 EK-YKNKEVELLGCTARGATIITLMASF--PHVRERIKRWDEEV-EKARRFAAEMEKLGIKQLGDNPHNHDLMF------  297 (364)
T ss_dssp             SS-CTTSBGGGTTCCCCSHHHHHHHHHH--HHHHHHGGGHHHHH-HHHHHHHHHHHHTTCEEESSSSCCSSEEE------
T ss_pred             cc-cCcccccccccccchhHHHHHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHcCCeecCCCCCCcceEE------
Confidence            00 0000111111111111111222222  11223333344444 35556777777764322112233322222      


Q ss_pred             cccccccccc--cCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee-cCHHHHHHHHHHHHHHHHHH
Q 047983          161 KCLLKLNYSL--LEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA-VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       161 ~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~-~~~~~l~~~~~~l~~~l~~~  229 (233)
                         ...+...  .........+....+...|+...   ..+....+|++.. .++++++.+++.|++++++|
T Consensus       298 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~g~~~~~~~~~~~~t~edid~~~~~l~ei~~~y  363 (364)
T d2e7ja1         298 ---FHAEVLYEISKKAKGGRFFLYRELKSRKIHGI---KPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY  363 (364)
T ss_dssp             ---EECHHHHHHHHHSSSGGGHHHHHHHHTTEECS---CTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             ---EeccchHHHHHHhhccchHHHHHHHhcCCcee---cCCCcceEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence               1111100  00001133445566677777532   2233456777643 48899999999999999886

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.5e-10  Score=98.89  Aligned_cols=188  Identities=11%  Similarity=0.151  Sum_probs=104.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|.||+...|...|.-. .....+.++     +-+++|..+..++.+|.+++++  .+.+.   .   
T Consensus       213 ~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~PD-----i~~~gK~l~gG~~p~~av~~~~--~i~~~---~---  279 (404)
T d2byla1         213 GVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPD-----IVLLGKALSGGLYPVSAVLCDD--DIMLT---I---  279 (404)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS-----EEEECGGGGTTSSCCEEEEECH--HHHTT---S---
T ss_pred             HHHHHHHhcCeEEEeeccccccccccccchhhhcCCCCC-----EEEECchhhCCCccceeeeech--hhhhc---c---
Confidence            68899999999999999999986665422 122223332     4489999665448999999987  33321   1   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC-ITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~~~~g~~~~~~~~~  159 (233)
                           .......+++.++.+.+++.+.+ +.-.+   ....+..++.-+++.+.|+++.. ...-.... |+..-     
T Consensus       280 -----~~~~~~~T~~gnpl~~aaa~a~L-~~i~~---~~l~~~~~~~g~~l~~~l~~l~~~~i~~vRg~-Gl~~~-----  344 (404)
T d2byla1         280 -----KPGEHFSTYGGNPLGCRVAIAAL-EVLEE---ENLAENADKLGIILRNELMKLPSDVVTAVRGK-GLLNA-----  344 (404)
T ss_dssp             -----CTTSSCCSSTTCHHHHHHHHHHH-HHHHH---TTHHHHHHHHHHHHHHHHHTSCTTTEEEEEEE-TTEEE-----
T ss_pred             -----CCCCCCcCCCcCHHHHHHHHHHH-HHHHh---cCchhhhhHhhHHHHHHHHhhccccceeeeec-ccEEE-----
Confidence                 11111222332222222333333 21111   22333444445556666655321 11111222 33333     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                          +.+..+.  .. +..++..+ +.++||.+.|..    .+.+|++..  .+++++++++++|.+.+.++
T Consensus       345 ----i~~~~~~--~~-~~~~~~~~-l~~~Gvl~~~~~----~~~i~l~PpL~it~~~id~~~~~l~~al~~f  404 (404)
T d2byla1         345 ----IVIKETK--DW-DAWKVCLR-LRDNGLLAKPTH----GDIIRFAPPLVIKEDELRESIEIINKTILSF  404 (404)
T ss_dssp             ----EEECCCS--SC-CHHHHHHH-HHHTTEECEEEE----TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             ----EEEecCC--ch-hHHHHHHH-HHhCCeEEecCC----CCEEEEECCcCCCHHHHHHHHHHHHHHHHcC
Confidence                2232211  11 24445544 557899998732    367888744  48999999999999998753

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=3.6e-10  Score=97.20  Aligned_cols=189  Identities=10%  Similarity=0.030  Sum_probs=104.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|.||+...|...|.-. .....+.++     +-+++|..+..+..+|.+++++  ++.+.  +.   
T Consensus       230 ~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PD-----i~~~gK~l~gG~~p~~av~~~~--~i~~~--~~---  297 (429)
T d1s0aa_         230 RIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPD-----ILCLGKALTGGTMTLSATLTTR--EVAET--IS---  297 (429)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS-----EEEECGGGGTSSSCCEEEEECH--HHHHH--HH---
T ss_pred             HHHHHHHHcCcceehhhccccccccccccccccceeccc-----ccccccccccccccccchhhHH--HHHhc--cC---
Confidence            68999999999999999999996665322 112222232     5578898766669999999987  33321  00   


Q ss_pred             hhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc---CCCcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE---IPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~~~~~~~~~~~~g~~~~~~~  157 (233)
                       ......+....+++.++.+.+++.+.+ +.-.+   .+.....++.-+++.+.|++   .+.+.. +... |.++.   
T Consensus       298 -~~~~~~~~~~~T~~gnp~~~aaa~a~L-~~i~~---~~~~~~~~~~g~~l~~~L~~l~~~~~v~~-vrg~-Gl~~~---  367 (429)
T d1s0aa_         298 -NGEAGCFMHGPTFMGNPLACAAANASL-AILES---GDWQQQVADIEVQLREQLAPARDAEMVAD-VRVL-GAIGV---  367 (429)
T ss_dssp             -TSTTSSCSCCCTTTTCHHHHHHHHHHH-HHHHT---CHHHHHHHHHHHHHHHHHGGGGGCTTEEE-EEEE-TTEEE---
T ss_pred             -CCCCcceeecCCCCCCcccchhhhccc-ccccc---ccccchhhHHHHHHHHHHHHhccCCceEE-Eeec-ccEEE---
Confidence             000000111123333323322333332 21111   12233333333444444443   332221 2233 33444   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEe--ecCHHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITF--AVEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~--~~~~~~l~~~~~~l~~~l~~~  229 (233)
                            +.+..+.      ....+.+.+.++||.+.|..     +.+|++.  ..+++++++++++|.+.+++.
T Consensus       368 ------~e~~~~~------~~~~~~~~~~~~Gl~~~~~g-----~~i~~~Ppl~it~~eid~~~~~l~~al~e~  424 (429)
T d1s0aa_         368 ------VETTHPV------NMAALQKFFVEQGVWIRPFG-----KLIYLMPPYIILPQQLQRLTAAVNRAVQDE  424 (429)
T ss_dssp             ------EEESSCB------CHHHHHHHHHHTTEECCCBT-----TEEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred             ------EEecCcc------cHHHHHHHHHHCCcEEEecC-----CEEEEeCCcCCCHHHHHHHHHHHHHHHHhh
Confidence                  3343222      44555666667899987742     6888874  358999999999999988653

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.4e-09  Score=90.07  Aligned_cols=209  Identities=14%  Similarity=0.074  Sum_probs=115.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh--
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF--   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~--   78 (233)
                      ++|.++|++||+++++|.+.+-.    ..+..+..++.   -+++.|..|.++.|+ -+|++..++  ..++.+....  
T Consensus       164 ~~i~~~~~~~g~~~~vD~~qs~g----~~~~d~~~~~~---D~~~~s~~K~~~gp~-g~~~~~~~~--~~~~~~~~~~~~  233 (388)
T d1h0ca_         164 DGFGELCHRYKCLLLVDSVASLG----GTPLYMDRQGI---DILYSGSQKALNAPP-GTSLISFSD--KAKKKMYSRKTK  233 (388)
T ss_dssp             TTHHHHHHTTTCEEEEECTTTTT----TSCCCTTTTTC---SEEEEESSSTTCCCT-TCEEEEECH--HHHHHHTTCSSC
T ss_pred             HHHHHHhhcccccceeccccccc----ccccccccccc---ceecccccccccCCC-ceEEEeecH--HHHHhhhhcccc
Confidence            57999999999999999998862    22223332332   378889999875544 345666554  2222110000  


Q ss_pred             hhhhhhH-Hhhhhh------hhhccC-cchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC-
Q 047983           79 FHSISLN-MRMDDY------LLLSES-VYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE-  148 (233)
Q Consensus        79 ~~~~~~~-~~~~~~------~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-  148 (233)
                      .....+. .....+      .....+ ++... .++...+....+.-++...++..+..+++++.++..+.......+. 
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~  313 (388)
T d1h0ca_         234 PFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPAL  313 (388)
T ss_dssp             CSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGG
T ss_pred             ccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCcccccCCHHH
Confidence            0000000 000000      001111 22222 2222222111222245666677777777888877653322111111 


Q ss_pred             -ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEE-eec--CHHHHHHHHHHHHH
Q 047983          149 -GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRIT-FAV--EPSAFEIGLGRMKA  224 (233)
Q Consensus       149 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~-~~~--~~~~l~~~~~~l~~  224 (233)
                       ....+.         +.+|.    +. +..++...+++++||.+..|..-...+.+||+ ++.  +.++++.+++.|++
T Consensus       314 rs~~i~~---------~~~p~----~~-~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~  379 (388)
T d1h0ca_         314 RLPTVTT---------VAVPA----GY-DWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRA  379 (388)
T ss_dssp             BCTTEEE---------EECCT----TC-CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred             cCCeEEE---------EECCC----CC-CHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence             111222         22332    22 46677778888889999988655456789999 653  78999999999999


Q ss_pred             HHHHHhhcC
Q 047983          225 FYYRHAKKQ  233 (233)
Q Consensus       225 ~l~~~~~~~  233 (233)
                      ++++..+++
T Consensus       380 ~L~~l~k~~  388 (388)
T d1h0ca_         380 ALQHCPKKK  388 (388)
T ss_dssp             HHHHSCCC-
T ss_pred             HHHHhcccC
Confidence            999987764

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.02  E-value=3.6e-10  Score=97.13  Aligned_cols=199  Identities=16%  Similarity=0.098  Sum_probs=98.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++|++||+++|.||++..| ..|.. ......+-.+.   +-+++|..+ .|+.+|.+++++  ++++.  +. .  
T Consensus       224 ~l~~lc~~~~~llI~DEv~tG~-r~g~~-~~~~~~gi~PD---i~~~gK~lg-gG~p~~a~~~~~--~i~~~--~~-~--  290 (427)
T d2gsaa_         224 GLREITLEHDALLVFDEVMTGF-RIAYG-GVQEKFGVTPD---LTTLGKIIG-GGLPVGAYGGKR--EIMQL--VA-P--  290 (427)
T ss_dssp             HHHHHHHHTTCEEEEECTTTBT-TTBTT-CHHHHTTCCCS---EEEECGGGG-TTSCCEEEEECH--HHHTT--BT-T--
T ss_pred             HHHHHHHHhceeeeeccccccc-eeccc-chHHhcCCCHH---HHhhhhccC-CCcceeeeeehH--HHHHH--hc-c--
Confidence            5889999999999999999988 34421 12222222222   447788744 589999999887  44431  11 0  


Q ss_pred             hhhHHhhhhhhhhccCcchHHHHHHHH--hhh-cHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecC
Q 047983           82 ISLNMRMDDYLLLSESVYTTVGAVPQI--LEK-TEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGS  158 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  158 (233)
                         ........+++.++...+++++.+  ++. ...+...+.-+++++..+.+.+.   .+.... ....++++...+..
T Consensus       291 ---~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~---~~~~~~-v~~~ggm~~i~~~~  363 (427)
T d2gsaa_         291 ---AGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQE---TGHAAC-GGQVSGMFGFFFTE  363 (427)
T ss_dssp             ---TSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHH---TTCCCE-EEEETTEEEEESSS
T ss_pred             ---cCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHHhhhhHHHHHHHHHHHHHHhh---cCCCcE-EcccCCeEEEEEec
Confidence               001111122332222222333332  111 12233444444444444333333   322221 22334554431111


Q ss_pred             CCcccccccccccCCCC-ChHHHHHHHHhccCEEEECCcccCCCCcEEEEeecCHHHHHHHHHHHHHHHHH
Q 047983          159 EDKCLLKLNYSLLEGIN-SDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       159 ~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~~~~~l~~~~~~l~~~l~~  228 (233)
                      +.+-..+    ...... +-...+...+.++||.+.|+..   ..++ +++..++++++++++.+++++++
T Consensus       364 ~~v~~~~----~~~~~d~~~~~~~~~~ll~~Gv~l~p~~~---~~~~-~~l~~Te~dId~~l~al~~al~~  426 (427)
T d2gsaa_         364 GPVHNYE----DAKKSDLQKFSRFHRGMLEQGIYLAPSQF---EAGF-TSLAHTEEDIDATLAAARTVMSA  426 (427)
T ss_dssp             CCCCSHH----HHTTSCHHHHHHHHHHHHHTTEECCSSTT---SCEE-CCTTCCHHHHHHHHHHHHHHHTC
T ss_pred             cCCCCHH----HhhcccHHHHHHHHHHHHHCCEEECCCCC---ccee-CCCCCCHHHHHHHHHHHHHHHHh
Confidence            1100000    000000 0112344445578999988532   1222 56667999999999999998864

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=3.9e-09  Score=89.73  Aligned_cols=199  Identities=14%  Similarity=0.081  Sum_probs=114.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh-
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF-   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~-   79 (233)
                      ++|.++|+++|+++++|-+++.    |.-+..+..++.+   +++.|..|.+|.+|  +|++..++  ..++.+..... 
T Consensus       183 ~~i~~~~~~~g~~~~vD~~q~~----g~~~id~~~~~~D---~~~~s~hK~~Gp~G--~g~l~v~~--~~~~~~~~~~~~  251 (405)
T d1jf9a_         183 AEMITLAHQHGAKVLVDGAQAV----MHHPVDVQALDCD---FYVFSGHKLYGPTG--IGILYVKE--ALLQEMPPWEGG  251 (405)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTT----TTSCCCHHHHTCS---EEEEEGGGTTSCSS--CEEEEECH--HHHTTCCCSSCS
T ss_pred             HHhhhHHHHcCCeeecccceec----cccccchhhcCCc---eeeccccccccCCC--ceeeeech--hhhcccCccccc
Confidence            4789999999999999999887    3233344444443   88999999987777  78888876  33321110000 


Q ss_pred             --h--hhhhHHhh--h-hhhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC--
Q 047983           80 --H--SISLNMRM--D-DYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE--  148 (233)
Q Consensus        80 --~--~~~~~~~~--~-~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--  148 (233)
                        .  ........  . ....+..++....  .++...++-..+.-.+...++.....+.+.+.++.++.... ..|.  
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~-~~~~~r  330 (405)
T d1jf9a_         252 GSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTL-YGPQNR  330 (405)
T ss_dssp             SSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEE-ESCTTC
T ss_pred             ccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCCcccc-cCCcCc
Confidence              0  00000000  0 0001111222222  33333222112223344555566666677777777765543 2332  


Q ss_pred             ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC--------CCCcEEEEeec--CHHHHHHH
Q 047983          149 GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG--------LKDWLRITFAV--EPSAFEIG  218 (233)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--------~~~~~Rl~~~~--~~~~l~~~  218 (233)
                      ++...+          .++     +.  +...+...|.++||.+..|+.+.        .++++|+|++.  +.++++.+
T Consensus       331 ~~ivsf----------~~~-----~~--~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l  393 (405)
T d1jf9a_         331 LGVIAF----------NLG-----KH--HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRL  393 (405)
T ss_dssp             CSEEEE----------EET-----TC--CHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHH
T ss_pred             CcEEEE----------EcC-----CC--CHHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHH
Confidence            333332          232     22  34456667789999999887543        26789999996  78999999


Q ss_pred             HHHHHHHHHH
Q 047983          219 LGRMKAFYYR  228 (233)
Q Consensus       219 ~~~l~~~l~~  228 (233)
                      ++.|+++++-
T Consensus       394 ~~~l~~i~r~  403 (405)
T d1jf9a_         394 VTGLQRIHRL  403 (405)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9988887753

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.01  E-value=3.5e-09  Score=88.86  Aligned_cols=196  Identities=11%  Similarity=0.095  Sum_probs=108.8

Q ss_pred             ChHHHHHHHc----CcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccch
Q 047983            1 FCIEETTKKL----GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGV   76 (233)
Q Consensus         1 ~~i~~l~~~~----~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~   76 (233)
                      ++|.++|+++    ++++++|.+++..    ..+..+..++   .-+++.|+.|.++.| ..+|++..++  ...+++.-
T Consensus       165 ~~I~~l~~~~~~~~~~~~~vD~~~~~g----~~~~~~~~~~---~D~~~~s~~K~~~~p-~G~g~l~~~~--~~~~~~~p  234 (381)
T d1elua_         165 AEIMAVCRRHQGNYPVRVLVDGAQSAG----SLPLDFSRLE---VDYYAFTGHKWFAGP-AGVGGLYIHG--DCLGEINP  234 (381)
T ss_dssp             HHHHHHHHHCCSSSCCEEEEECTTTBT----TBCCCTTTSC---CSEEEEESSSTTCCC-TTCEEEEECT--TTGGGCCC
T ss_pred             hHHHHHHhhcccccccccccccccccc----cccccccccc---ccccccccccccccc-chhhHHHhhH--HHHHhcCc
Confidence            3789999985    6999999998752    2223333333   338899999986543 4568888776  33321110


Q ss_pred             hhhh--h-hhhH----Hhhh-hhhhhccC-cchHH-HHHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHhhcCCCcccc-
Q 047983           77 AFFH--S-ISLN----MRMD-DYLLLSES-VYTTV-GAVPQILEKTEE-EFFSKITDILREAADICCDRLKEIPCITCP-  144 (233)
Q Consensus        77 ~~~~--~-~~~~----~~~~-~~~~~~~~-~~~~~-~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-  144 (233)
                      ....  . ....    .... ....+..+ ++... .++.+.++.... ...+...++..++++++.+.|++++++..+ 
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  314 (381)
T d1elua_         235 TYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLA  314 (381)
T ss_dssp             CSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESC
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcCCCeEecC
Confidence            0000  0 0000    0000 00001111 11111 222222211111 122445678888889999999998776542 


Q ss_pred             -cCCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHH
Q 047983          145 -KKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGR  221 (233)
Q Consensus       145 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~  221 (233)
                       ..|.++++.+          .++..      .+.+.+.+.|+++||.+..   ++.++++|+|+..  +.++++.+++.
T Consensus       315 ~~~~~~~~vsf----------~~~~~------~~~~~i~~~L~~~gi~v~~---~~~~~~lRis~~~~nt~edid~ll~~  375 (381)
T d1elua_         315 TSAPQAGLVSF----------TVDSP------LGHRAIVQKLEEQRIYLRT---IADPDCIRACCHYITDEEEINHLLAR  375 (381)
T ss_dssp             SSCCSSSEEEE----------EECSS------SCHHHHHHHHHHTTEECEE---ETTTTEEEEECCTTCCHHHHHHHHHH
T ss_pred             CCCccccEEEE----------EcCCC------CCHHHHHHHHHhCCcEEEe---cCCCCEEEEecCCCCCHHHHHHHHHH
Confidence             2345564432          23211      1455667788899998753   4457899999885  78888888888


Q ss_pred             HHHH
Q 047983          222 MKAF  225 (233)
Q Consensus       222 l~~~  225 (233)
                      |+++
T Consensus       376 l~e~  379 (381)
T d1elua_         376 LADF  379 (381)
T ss_dssp             HTTC
T ss_pred             HHhh
Confidence            8653

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=98.99  E-value=2.9e-09  Score=86.56  Aligned_cols=182  Identities=7%  Similarity=-0.088  Sum_probs=98.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccC-CccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++.++|++||++++.|+++.....+... ..+.... .........+..|. +...  .+.......  ..    ..   
T Consensus       159 ~i~~~~~~~~~~~~~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~--~~----~~---  225 (345)
T d1v72a1         159 AIGDVCKSSSLGLHMDGSRFANALVSLG-CSPAEMTWKAGVDALSFGATKN-GVLA--AEAIVLFNT--SL----AT---  225 (345)
T ss_dssp             HHHHHHHHTTCEEEEEETTHHHHHHHHT-CCTTTTTGGGTCCEEEECCGGG-TCSS--CEEEEESSG--GG----HH---
T ss_pred             hHHHHHHhcCceeeecccccceeccccc-cCHHHhhccccccccccCcccc-cccc--ccccccchh--hh----hh---
Confidence            5788999999999999999875544321 1121111 11223334444444 2222  233444331  11    11   


Q ss_pred             hhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           81 SISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                           ................. .+.+... ........+......++...+...+.+++++.. ..|.++.+++     
T Consensus       226 -----~~~~~~~~~~~~~~~~~~aa~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~-~~p~~~niv~-----  293 (345)
T d1v72a1         226 -----EMSYRRKRAGHLSSKMRFLSAQIDA-YLTDDLWLRNARKANAAAQRLAQGLEGLGGVEV-LGGTEANILF-----  293 (345)
T ss_dssp             -----HHHHHHHHTTCCCSSTHHHHHHHHH-HTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEE-ESCCCSSEEE-----
T ss_pred             -----hccccccccccccchhhHHhhhhHH-HHHHhhhhhhccchhhHHHHHHHHHHhcCCcEe-ccCCCccEEE-----
Confidence                 11111111111222222 2222221 112223344555666777777788888888775 5677777888     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAF  225 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~  225 (233)
                          +.++          .+.+.+ |.++|+.|.++.  ...+.+|++++.  ++|+++.+++.|+++
T Consensus       294 ----~~~~----------~~~~~~-L~~~gi~v~~~~--~~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         294 ----CRLD----------SAMIDA-LLKAGFGFYHDR--WGPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             ----EEEC----------HHHHHH-HHHTTCBCBCSS--SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             ----EEcC----------HHHHHH-HHHcCCCccccC--CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence                4442          233444 556798875532  236799999874  899999999888753

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=98.92  E-value=2.1e-08  Score=85.22  Aligned_cols=200  Identities=13%  Similarity=0.103  Sum_probs=115.5

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh-
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF-   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~-   79 (233)
                      ++|.++|+++|+++++|-+++.    |..+..+..++.+   ++..|..|.+|.+|  +|++..++  ...+.+.-... 
T Consensus       183 ~~i~~~~~~~g~~~ivDa~q~~----g~~~id~~~~~~D---~~~~s~hK~~gp~G--~g~l~v~~--~~~~~~~p~~~g  251 (408)
T d1t3ia_         183 EEIAQLAHQAGAKVLVDACQSA----PHYPLDVQLIDCD---WLVASGHKMCAPTG--IGFLYGKE--EILEAMPPFFGG  251 (408)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTT----TTSCCCHHHHTCS---EEEEEGGGTTSCTT--CEEEEECH--HHHHHSCCCSCS
T ss_pred             HHHhhhhhccCceeeeccceec----ccccccccccCCc---eEEeccccccCCCC--ccccccch--hhhhcCCceecC
Confidence            3688999999999999988876    3333445444543   88999999866666  68888876  22211000000 


Q ss_pred             -hhhh--hHHhh---hhhhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-----
Q 047983           80 -HSIS--LNMRM---DDYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKK-----  146 (233)
Q Consensus        80 -~~~~--~~~~~---~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-----  146 (233)
                       ....  .....   .....+..++....  .++...++-..+.-.++++++..+..+++.+.+++.++...+.+     
T Consensus       252 ~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  331 (408)
T d1t3ia_         252 GEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHG  331 (408)
T ss_dssp             TTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGS
T ss_pred             CcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCccccccCCCcccc
Confidence             0000  00000   00001111222222  33333332222223455666677777788888877765543211     


Q ss_pred             CCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC--------CCCcEEEEeec--CHHHHH
Q 047983          147 PEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG--------LKDWLRITFAV--EPSAFE  216 (233)
Q Consensus       147 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--------~~~~~Rl~~~~--~~~~l~  216 (233)
                      ..++...+          .++     ++  +.+.+...|.++||.+..|+.+.        ..+.+|+|+..  +.++++
T Consensus       332 ~~~~iv~f----------~~~-----~~--~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did  394 (408)
T d1t3ia_         332 DRAALASF----------NVA-----GL--HASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEID  394 (408)
T ss_dssp             CBCSEEEE----------EET-----TB--CHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHH
T ss_pred             CcceEEEE----------EeC-----CC--CHHHHHHHHhhCCcEEecCcccccHHHHhhcCCccEEEECCCCCCHHHHH
Confidence            11233322          232     22  45556667789999999887653        35789999996  899999


Q ss_pred             HHHHHHHHHHHH
Q 047983          217 IGLGRMKAFYYR  228 (233)
Q Consensus       217 ~~~~~l~~~l~~  228 (233)
                      .+++.|+++++-
T Consensus       395 ~li~~L~~~~~~  406 (408)
T d1t3ia_         395 LFLQSLQATIRF  406 (408)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998864

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=98.91  E-value=3.1e-09  Score=91.18  Aligned_cols=197  Identities=14%  Similarity=0.105  Sum_probs=101.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|.||+...|...|... .....+.++     +-+++|. ...|+.++.+++.+  .+.+.  ..   
T Consensus       226 ~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PD-----i~~~gK~-l~gG~p~~av~~~~--~~~~~--~~---  292 (431)
T d1zoda1         226 ALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPD-----ILTLSKT-LGAGLPLAAIVTSA--AIEER--AH---  292 (431)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS-----EEEECHH-HHTTSSCEEEEECH--HHHHH--HH---
T ss_pred             HHHHHHHhcCceEEeccccccccccccccccccCCCCcc-----hhccccc-cccccccceeeeee--cchhh--hh---
Confidence            68899999999999999999987666432 111223332     5578898 44578888888876  23211  00   


Q ss_pred             hhhhHHhhhhhhhhccCcchHH--HHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVYTTV--GAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                           .. ......+.+.++..  ++.+. ++.- .++..++..+.-+.-.+.+.+.+++.+.+.. ....|.++..   
T Consensus       293 -----~~-~~~~~~T~~g~pl~~aaa~a~-l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~-vrG~Glm~~i---  361 (431)
T d1zoda1         293 -----EL-GYLFYTTHVSDPLPAAVGLRV-LDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGD-VRGRGLLLGV---  361 (431)
T ss_dssp             -----HT-TCCCCCTTTTCHHHHHHHHHH-HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEE-EEEETTEEEE---
T ss_pred             -----cc-cccccCCCCCCcchHHHHHHH-HHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeEE-EeecceEEEE---
Confidence                 00 00111122333333  23332 2211 2223333333333333334444444543322 3344444432   


Q ss_pred             CCCccccccc--ccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLN--YSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       158 ~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                             .+.  .........-...+.+.+.++|+....-..-+..+.+|++..  .+++++++++++|.+.+++.
T Consensus       362 -------e~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~v  430 (431)
T d1zoda1         362 -------EIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA  430 (431)
T ss_dssp             -------EEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             -------EEecCCcccCccHHHHHHHHHHHHHhCcccCeeeecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence                   111  000000001234455556677886321001112467888754  48999999999999999863

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=98.85  E-value=6.7e-09  Score=87.91  Aligned_cols=178  Identities=17%  Similarity=0.173  Sum_probs=102.1

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|.++|++||+++|.||+.+.|...|... .....+.++     +.+++|..+ .|+.++.+++.+  ++.+        
T Consensus       202 ~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PD-----i~~~gK~l~-gG~~~~~~~~~~--~~~~--------  265 (387)
T d1vefa1         202 AAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPD-----ILTLAKALG-GGVPLGVAVMRE--EVAR--------  265 (387)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS-----EEEECGGGG-TTSSCEEEEEEH--HHHH--------
T ss_pred             HHHHHHHHcCceEEecccccccCccCCCcccccCCcCCc-----eeeecccCC-CCccccccccce--eeee--------
Confidence            68899999999999999999986665322 122223332     457889844 578888888876  2322        


Q ss_pred             hhhhHHhhhh-hhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-ccCCCccEEEEEe
Q 047983           81 SISLNMRMDD-YLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITC-PKKPEGSMFVMYC  156 (233)
Q Consensus        81 ~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~g~~~~~~  156 (233)
                            .... ....+.+.++..  ++.+.+ +.-.+   .+..+.+++.-+++.+.|+++..-.. -.... |.+..  
T Consensus       266 ------~~~~~~~g~T~~gnPla~aaa~a~L-~~l~~---~~~~~~v~~~g~~l~~~L~~l~~~~v~~vrg~-Gl~~~--  332 (387)
T d1vefa1         266 ------SMPKGGHGTTFGGNPLAMAAGVAAI-RYLER---TRLWERAAELGPWFMEKLRAIPSPKIREVRGM-GLMVG--  332 (387)
T ss_dssp             ------TSCTTSSCCSSTTCHHHHHHHHHHH-HHHHH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEE-TTEEE--
T ss_pred             ------ccccCCccccCCCCcchhhhcccch-hhccc---ccccchHhhhhHHHHHHHHhcCCCceEEEeec-ceEEE--
Confidence                  1111 111222333433  333332 11111   23344555555666677766422111 01122 33344  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l  226 (233)
                             +.++.       +....+.+++.++|+.+.+..    .+.+|++..  .+++++++++++++++|
T Consensus       333 -------ie~~~-------~~~~~~~~~~~~~g~l~~~~g----~~~ir~~Ppl~it~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         333 -------LELKE-------KAAPYIARLEKEHRVLALQAG----PTVIRFLPPLVIEKEDLERVVEAVRAVL  386 (387)
T ss_dssp             -------EEESS-------CSHHHHHHHHHHHCEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             -------EEEeC-------CchHHHHHHHHHCCCeEEecC----CCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence                   33332       245566666777788776532    367888644  48999999999999876

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=4.1e-08  Score=82.56  Aligned_cols=195  Identities=12%  Similarity=0.075  Sum_probs=105.9

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++||+++++|.+|....    .+..+...+.   -+++.|..|.+|.+|  +|++.+++.  ..+.+.-.  .
T Consensus       163 ~~I~~~~~~~~~~~ivD~~~~~g~----~~~d~~~~~~---D~~~~s~~k~~g~~g--~g~~~~~~~--~~~~~~~~--~  229 (391)
T d1p3wa_         163 AAIGEMCRARGIIYHVDATQSVGK----LPIDLSQLKV---DLMSFSGHKIYGPKG--IGALYVRRK--PRVRIEAQ--M  229 (391)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTBTT----BCCCTTTSCC---SEEEEESTTTTSCSS--CEEEEECBT--TBCCCCCS--S
T ss_pred             HHHHHHhccCCcEEEEeeccccCC----ccccchhccc---cccccccccccCCCc--eEEEEEecc--hhcccCCc--c
Confidence            379999999999999999998632    2223332333   277789999987777  477777662  22210000  0


Q ss_pred             hhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-CCc-cEEEEEec
Q 047983           81 SISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKK-PEG-SMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~-g~~~~~~~  157 (233)
                       .  .... ............. .+++..+. ...+......+++++.+..+.+.|..+++...... +.. ...+.   
T Consensus       230 -~--gg~~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~---  301 (391)
T d1p3wa_         230 -H--GGGH-ERGMRSGTLPVHQIVGMGEAYR-IAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILN---  301 (391)
T ss_dssp             -C--SSCT-TTTTSCSCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEE---
T ss_pred             -c--CCcc-ccCcccCcchhhhhhhhhhhhh-HHHHHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEE---
Confidence             0  0000 0001111111111 33333322 12334555566777888888888877654332111 111 11111   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-------------------CCcEEEEeec--CHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-------------------KDWLRITFAV--EPSAFE  216 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------~~~~Rl~~~~--~~~~l~  216 (233)
                            +.++.     . +..... ..|  .++.+..|..+..                   .+++|+|+..  +.++++
T Consensus       302 ------~~~~~-----~-~~~~~~-~~l--~~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid  366 (391)
T d1p3wa_         302 ------VSFNY-----V-EGESLI-MAL--KDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEID  366 (391)
T ss_dssp             ------EEETT-----S-CHHHHH-HHT--TTEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHH
T ss_pred             ------EEeCC-----C-ChHHHH-HHh--CCCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHH
Confidence                  11221     1 233433 334  3666666654321                   2579999996  789999


Q ss_pred             HHHHHHHHHHHHHhh
Q 047983          217 IGLGRMKAFYYRHAK  231 (233)
Q Consensus       217 ~~~~~l~~~l~~~~~  231 (233)
                      .+++.|++++++.+.
T Consensus       367 ~l~~~l~~~l~~lr~  381 (391)
T d1p3wa_         367 YTIELVRKSIGRLRD  381 (391)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988753

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.82  E-value=1.1e-08  Score=88.39  Aligned_cols=182  Identities=8%  Similarity=0.007  Sum_probs=94.9

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccc--cCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGV--FGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~--~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      +|.++|++||+++|.||+...|..+|.- .....  +.....   +-+++|..+  |   |+.....   .+.. .    
T Consensus       273 ~lr~lc~~~gillI~DEV~tG~gRtG~~-~~~e~~gi~~~PD---iv~~gK~l~--~---g~~~~~~---~~~~-~----  335 (461)
T d1ohwa_         273 KLRDISRKHGCAFLVDEVQTGGGSTGKF-WAHEHWGLDDPAD---VMTFSKKMM--T---GGFFHKE---EFRP-N----  335 (461)
T ss_dssp             HHHHHHHHTTCEEEEECTTTCSSTTSSS-SGGGGGCCSSCCS---EEEECGGGS--S---EEEEECG---GGSC-S----
T ss_pred             HHHHHHHhhCcceecccccccccccccc-ccccccccccCch---hhhhhhccc--c---ccccccc---cccc-c----
Confidence            6889999999999999999999777642 22221  221122   337889643  3   5555443   2211 0    


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHH--hhh-cHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEe
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQI--LEK-TEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~  156 (233)
                            .......+++.++...+++.+.+  ++. ...++..++-+++.++.+.+.   .+.+.+..-+... |.++-  
T Consensus       336 ------~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~---~~~~~~i~~vrG~-Gl~~~--  403 (461)
T d1ohwa_         336 ------APYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQ---ARYPQFISRVRGR-GTFCS--  403 (461)
T ss_dssp             ------STTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH---HHCTTTCEEEEEE-TTEEE--
T ss_pred             ------cccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHH---hhCCCceEEeeee-eEEEE--
Confidence                  11112223333332222333332  111 112233333333333333332   2233321112233 44444  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l~~~  229 (233)
                             +.++.+.      ....+...+.++||.+.+.+    .+.+|+.-.  .+++++++++++|.++++++
T Consensus       404 -------ie~~~~~------~~~~i~~~~~~~Gll~~~~~----~~~ir~~PpL~it~~eid~~~~~l~~~l~ef  461 (461)
T d1ohwa_         404 -------FDTPDES------IRNKLISIARNKGVMLGGCG----DKSIRFRPTLVFRDHHAHLFLNIFSDILADF  461 (461)
T ss_dssp             -------EECSSHH------HHHHHHHHHHHTTEECEEET----TTEEECCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             -------EEcCCHH------HHHHHHHHHHHCCeEEeeCC----CCEEEEeCCcCCCHHHHHHHHHHHHHHHhcC
Confidence                   3443221      33445556667899998732    367888643  48999999999999999763

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=98.74  E-value=1.1e-08  Score=88.19  Aligned_cols=205  Identities=15%  Similarity=0.005  Sum_probs=105.6

Q ss_pred             hHHHHHHHcCcEEEEccccCccccC-------CCccccccccCCc-cCEEEEccCccccCCCCceEEEEEecCCCccccc
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFG-------NTHFVPMGVFGSI-VPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD   73 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~-------~~~~~~~~~~~~~-~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~   73 (233)
                      +|.++|++||+++|.|+++......       +...........+ ....-+.|+||..++.+++.|++++++...+.+ 
T Consensus       207 ~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~-  285 (465)
T d1ax4a_         207 EVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFT-  285 (465)
T ss_dssp             HHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHH-
T ss_pred             HHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcccccceeEeecchHHHHH-
Confidence            6889999999999999998743211       0000111111000 011113344444466778889999987321111 


Q ss_pred             cchhhhhhhhhHHhhhhhhh-hccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcc
Q 047983           74 LGVAFFHSISLNMRMDDYLL-LSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGS  150 (233)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g  150 (233)
                       ...        ........ .+.+.....  .+.+..+...   ......+...++.+++.+.|++. +... ..+.++
T Consensus       286 -~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~---~~~~~~~~~~~~~~~l~~~L~~~-g~~~-v~~~~~  351 (465)
T d1ax4a_         286 -LAR--------QRCVPMEGFVTYGGLAGRDMAAMVQGLEEG---TEEEYLHYRIGQVKYLGDRLREA-GIPI-QYPTGG  351 (465)
T ss_dssp             -HHH--------HHHHHHTCSTTTTTCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHT-TCCB-CSSCCS
T ss_pred             -hhh--------ccccccccCCCcchhhHHHHHHHhhhhHHh---hhHHHHHHHHHHHHHHHHHHHhh-cCcc-ccCCCc
Confidence             000        01111111 111111211  2222222111   11233344556678888999886 3333 456676


Q ss_pred             EEEEEecCCCcccccccc--cccCCC-CChHHHHHHHHhccCEEEECCccc-------------CCCCcEEEEeec---C
Q 047983          151 MFVMYCGSEDKCLLKLNY--SLLEGI-NSDTEFALKLAKEESIIVLPGITV-------------GLKDWLRITFAV---E  211 (233)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f-------------~~~~~~Rl~~~~---~  211 (233)
                      .++.         +....  +...+. -.....+.+++.+.||...+....             ...+.+|+++..   +
T Consensus       352 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T  422 (465)
T d1ax4a_         352 HAVF---------VDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYT  422 (465)
T ss_dssp             SEEE---------EESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSC
T ss_pred             ceee---------eehhhhcCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCC
Confidence            6665         21110  000000 024567788888999986543221             114679998753   7


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 047983          212 PSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       212 ~~~l~~~~~~l~~~l~~~~  230 (233)
                      +++++..++.|.+++++..
T Consensus       423 ~eeiD~vv~~l~~v~~~~~  441 (465)
T d1ax4a_         423 NDHMDYIADALIGLKEKFA  441 (465)
T ss_dssp             HHHHHHHHHHHHTTHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8999999999999887653

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.73  E-value=2.5e-08  Score=85.11  Aligned_cols=186  Identities=9%  Similarity=0.028  Sum_probs=97.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCcccc-CCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVF-GNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++++|++|+.... .+....+......   -+++.|.+|.++.| .-.|++...+.       .++  
T Consensus       231 ~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~---D~~~~s~hK~l~~~-~g~~~~~~~~~-------~~~--  297 (434)
T d2z67a1         231 VEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRV---DAVVSSSDKNLLTP-IGGGLVYSTDA-------EFI--  297 (434)
T ss_dssp             HHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCC---SEEEEEHHHHHCCC-SSCEEEEESCH-------HHH--
T ss_pred             HHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCc---ceEEEcCccccccC-CCccccccCcH-------HHH--
Confidence            3799999999999999999985431 1111111111222   26788999976543 33466666652       223  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccccCCCccEEEEEe
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEI---PCITCPKKPEGSMFVMYC  156 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~g~~~~~~  156 (233)
                            .++......+.+......+.+.+. .-..+......+...++++++.+.|+++   .+......+....+..  
T Consensus       298 ------~~~~~~~~~~~~~~~~~~~~a~l~-~~~~~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~~~~~~~~~--  368 (434)
T d2z67a1         298 ------KEISLSYPGRASATPVVNTLVSLL-SMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCI--  368 (434)
T ss_dssp             ------HHHHTTSCSCBCSHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCCCSSEEEE--
T ss_pred             ------HHHHhhcccccccchHHHHHHHHH-HHHHhcchhHHHHHHHHHHHHHHHHHHhhhhcCceecCCCCCceeee--
Confidence                  334333222222222222222221 1122334445555566666666666542   2333222333222222  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEE----ECCccc-------CCCCcEEEEeec--CHHHHHHHHHHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIV----LPGITV-------GLKDWLRITFAV--EPSAFEIGLGRMK  223 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v----~pg~~f-------~~~~~~Rl~~~~--~~~~l~~~~~~l~  223 (233)
                              ..+.        +...+...|.+.||..    .|...+       +..+++|++++.  ++++++..+++|+
T Consensus       369 --------~~~~--------~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~edID~~i~~L~  432 (434)
T d2z67a1         369 --------SVNS--------DPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLE  432 (434)
T ss_dssp             --------ECSS--------CHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             --------ecCC--------CHHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEecCCCCCHHHHHHHHHHHh
Confidence                    1321        3334445566778843    222222       236889998885  7899999988887


Q ss_pred             H
Q 047983          224 A  224 (233)
Q Consensus       224 ~  224 (233)
                      +
T Consensus       433 k  433 (434)
T d2z67a1         433 K  433 (434)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=98.73  E-value=4.2e-08  Score=78.58  Aligned_cols=179  Identities=11%  Similarity=-0.009  Sum_probs=95.8

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      ++.+.|.+++.+++.|++|......................+...+.+|  +..+.+.++.....  ....   ..    
T Consensus       154 ~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~---~~----  222 (340)
T d1svva_         154 DISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATK--AGGMFGEALIILND--ALKP---NA----  222 (340)
T ss_dssp             HHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTT--TTCSSCEEEEECSG--GGCT---TH----
T ss_pred             hhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCcc--ccccccccccccch--hhhh---hh----
Confidence            4678899999999999999865544322111111111122344444444  44455556666544  2221   11    


Q ss_pred             hhhHHhhhhhhhhccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCC
Q 047983           82 ISLNMRMDDYLLLSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSE  159 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~  159 (233)
                          ..... ...........  ++...++..   .......+...+++.++...|+.. ++.. ..|.++.+++     
T Consensus       223 ----~~~~~-~~~~~~~~~~~~~aa~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~-g~~~-~~p~~~~~v~-----  287 (340)
T d1svva_         223 ----RHLIK-QRGALMAKGWLLGIQFEVLMKD---NLFFELGAHSNKMAAILKAGLEAC-GIRL-AWPSASNQLF-----  287 (340)
T ss_dssp             ----HHHHH-HTTCCCTTTHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHT-TCCB-SSCCSSSEEC-----
T ss_pred             ----hhhcc-cccCccchhhHHHHHHHHHhhh---hHHHHHHHHHHHHHhhhHHHHhcC-CCee-ecCCCceEEE-----
Confidence                11111 11121222222  333333322   223344566777888888888886 5553 4566777888     


Q ss_pred             CcccccccccccCCCCChHHHHHHHHhcc---CEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 047983          160 DKCLLKLNYSLLEGINSDTEFALKLAKEE---SIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKA  224 (233)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~---gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~  224 (233)
                          +.++          .+...+++++.   ++.+.+.    ..+++|++++.  ++++++.+++.|++
T Consensus       288 ----~~~~----------~~~~~~l~~~~~~~~~~~~~~----~~~~vR~s~~~~~t~edid~~l~~l~~  339 (340)
T d1svva_         288 ----PILE----------NTMIAELNNDFDMYTVEPLKD----GTCIMRLCTSWATEEKECHRFVEVLKR  339 (340)
T ss_dssp             ----BEEE----------HHHHHHHTTTEECEEEEEETT----TEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             ----EeCC----------HHHHHHHHHhhhhhcccccCC----CCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence                4442          23344444432   3333332    25789998773  89999998888875

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=98.71  E-value=5.6e-07  Score=74.64  Aligned_cols=202  Identities=12%  Similarity=0.088  Sum_probs=110.2

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh--
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF--   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~--   78 (233)
                      ++|.++|+++|..+++|.+++.    +..+..+.   ..+-.+++.|..|.+++|+ -+|.+...+  ..++......  
T Consensus       163 ~~i~~~~~~~g~~~~vDa~~~~----g~~~~~~~---~~~~d~~~~s~~K~~~gp~-g~~~~~~~~--~~~~~~~~~~~~  232 (377)
T d1vjoa_         163 EGVGELCREFGTLLLVDTVTSL----GGVPIFLD---AWGVDLAYSCSQKGLGCSP-GASPFTMSS--RAIEKLQRRRTK  232 (377)
T ss_dssp             TTHHHHHHHHTCEEEEECTTTT----TTSCCCTT---TTTCSEEECCSSSTTCSCS-SCEEEEECH--HHHHHHHTCSSC
T ss_pred             hhhhhhhhhccceEEEecchhh----hhhhhccc---ccccceeeecccccccCCC-EEEEecchh--hHHhhhhccCCC
Confidence            4789999999999999999975    22222333   3333477888899765544 345555544  2222100000  


Q ss_pred             hhhhhhH-Hhhhhh----hhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC--cc
Q 047983           79 FHSISLN-MRMDDY----LLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPE--GS  150 (233)
Q Consensus        79 ~~~~~~~-~~~~~~----~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g  150 (233)
                      ....... .....+    ......+.... .++..........-.....++.+++.+.+.+.+...+... +..+.  ..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~rs~  311 (377)
T d1vjoa_         233 VANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSL-HVEKEYRLP  311 (377)
T ss_dssp             CSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCB-SSCGGGBCS
T ss_pred             CcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCcee-ecChHhcCC
Confidence            0000000 000011    01111122211 2222222122233456677777888888888887753221 12221  11


Q ss_pred             EEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEE-eec--CHHHHHHHHHHHHHHHH
Q 047983          151 MFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRIT-FAV--EPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~-~~~--~~~~l~~~~~~l~~~l~  227 (233)
                      ..+.         +.++.    ++ +..+++.++++++||.+..|...-..+.+|++ ++.  ++|+++..++.|+++++
T Consensus       312 ~v~~---------~~~p~----~~-~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~  377 (377)
T d1vjoa_         312 TLTT---------VCIPD----GV-DGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR  377 (377)
T ss_dssp             SEEE---------EECCT----TC-CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             eEEE---------EECCC----CC-CHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence            1222         22332    22 46677777888899999988765556789998 553  68889999999988763

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=98.70  E-value=5.4e-07  Score=77.30  Aligned_cols=212  Identities=10%  Similarity=-0.002  Sum_probs=109.3

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccC-CCccccccccCC-----ccCEEEEccCccccCCCCceEEEEEecCCCcccccc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFG-NTHFVPMGVFGS-----IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDL   74 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~-~~~~~~~~~~~~-----~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~   74 (233)
                      ++|+++|+++|++|++|++++..... +..+.+......     ...-+++.|++|.++.++- .+++...+  ..+...
T Consensus       193 ~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~-g~ll~~~~--~~~~~~  269 (462)
T d1c4ka2         193 HEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQ-TSQIHKKD--SHIKGQ  269 (462)
T ss_dssp             HHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTT-CEEEEEEC--GGGTTS
T ss_pred             HHHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCcccccccc-eEEEEecc--cccccc
Confidence            37899999999999999999864332 211112211111     1224889999999766542 34455544  232110


Q ss_pred             chhhhhhhhhHHhhhhhhh--hccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC----
Q 047983           75 GVAFFHSISLNMRMDDYLL--LSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKP----  147 (233)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----  147 (233)
                      ...  ..   .........  .+.+++... +.+.........+...+..+...++.+.+++.+++++.......+    
T Consensus       270 ~~~--~~---~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~  344 (462)
T d1c4ka2         270 LRY--CD---HKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVN  344 (462)
T ss_dssp             TTC--CC---HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEET
T ss_pred             chh--hh---HHHHHHhhhhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccc
Confidence            000  00   012222211  133333333 333222111122344555666667777777777664332110000    


Q ss_pred             ---------------------------------CccEEEEEecCCCccccccccccc---------CCCCChHHHHHHHH
Q 047983          148 ---------------------------------EGSMFVMYCGSEDKCLLKLNYSLL---------EGINSDTEFALKLA  185 (233)
Q Consensus       148 ---------------------------------~~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ll  185 (233)
                                                       ....+..     |+..+.+..+..         .++  +...+.+.|
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----Dp~k~~l~~~gi~~~~g~~~~~G~--~~~~~~~~L  417 (462)
T d1c4ka2         345 GKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYV-----DPNKFMLTTPGINPETGDYEDFGV--PATIVANYL  417 (462)
T ss_dssp             TEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEE-----CTTEEEEECSSEETTTTEECSSCC--CHHHHHHHH
T ss_pred             cccccccchHhhhcccchhccCCcchhccccccCccceec-----ccceeEEecCCccccccchhhcCC--cHHHHHHHH
Confidence                                             0111111     222222222211         022  355667778


Q ss_pred             hccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHHhh
Q 047983          186 KEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       186 ~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~~~  231 (233)
                      +++||.+-    ....+.+|+.++.  ++++++.+++.|.++-+.+..
T Consensus       418 ~~~gI~~e----~~~~~~i~~~~s~~~T~edid~li~aL~ei~r~~~~  461 (462)
T d1c4ka2         418 RDHGIIPE----KSDLNSILFLMTPAETPAKMNNLITQLLQLQRLIEE  461 (462)
T ss_dssp             HHTTCCCS----EECSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCeee----ccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            88998652    2234689998885  899999999999998877754

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=6.3e-07  Score=75.40  Aligned_cols=192  Identities=12%  Similarity=0.069  Sum_probs=125.2

Q ss_pred             hHHHHHHHcCcEEEEccccC-ccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYG-HLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++.++|++.|.++++|-+|. .++-++..+.|+..  .+   |+.+|..|++.  |-|-|.+.+.....     ++.   
T Consensus       184 ~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~--aD---vvt~tThKtlr--GPrggiI~~~~~~~-----~~~---  248 (416)
T d1dfoa_         184 KMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH--AH---VVTTTTHKTLA--GPRGGLILAKGGSE-----ELY---  248 (416)
T ss_dssp             HHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT--SS---EEEEESSSTTC--CCSCEEEEESSCCH-----HHH---
T ss_pred             HHHHHHHhcCceEEcchhhhhcceeccccCCcccc--cc---eeeeehhhccc--CCCceEEEeccchH-----hHH---
Confidence            68899999999999999998 56656655556643  12   88999999764  55679888874211     222   


Q ss_pred             hhhhHHhhhhhhhh--ccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLLL--SESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                           .++......  ..++.... ++.+..+..-....++...+.+.+|.+.|.+.|.+. ++.........-.++   
T Consensus       249 -----~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~-G~~iv~ggTdnHlvl---  319 (416)
T d1dfoa_         249 -----KKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER-GYKVVSGGTDNHLFL---  319 (416)
T ss_dssp             -----HHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEE---
T ss_pred             -----HHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC-CcccccCCCCCceeE---
Confidence                 344433332  22222222 555555544334566888899999999999999886 444333333345555   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEE----CCcccCC--CCcEEEEeec------CHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVL----PGITVGL--KDWLRITFAV------EPSAFEIGLGRMKAF  225 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~~--~~~~Rl~~~~------~~~~l~~~~~~l~~~  225 (233)
                              +++... ++  +...+...|++.||.+.    |+..=.+  .+.+||....      .++++++..+.|.++
T Consensus       320 --------vdl~~~-~~--~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~  388 (416)
T d1dfoa_         320 --------VDLVDK-NL--TGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDV  388 (416)
T ss_dssp             --------EECGGG-TC--CHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             --------EEeccc-CC--CHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHH
Confidence                    454332 33  66788889999999885    3321111  4689997662      678888888888887


Q ss_pred             HHH
Q 047983          226 YYR  228 (233)
Q Consensus       226 l~~  228 (233)
                      ++.
T Consensus       389 l~~  391 (416)
T d1dfoa_         389 LDS  391 (416)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            754

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.64  E-value=1.4e-06  Score=71.72  Aligned_cols=200  Identities=13%  Similarity=0.043  Sum_probs=107.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC-CCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+.+++|-+++-.    ..+..+.   ..+..++..|..|.+++ +|  +|++..++  ...++.+-...
T Consensus       147 ~~i~~~~~~~g~~~~vDa~qs~G----~~~~d~~---~~~~D~~~~s~~K~l~gp~G--~g~l~~~~--~~~~~~~~~~~  215 (361)
T d1m32a_         147 DEVGALAHRYGKTYIVDAMSSFG----GIPMDIA---ALHIDYLISSANKCIQGVPG--FAFVIARE--QKLAACKGHSR  215 (361)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTT----TSCCCTT---TTTCSEEEEESSSTTCCCSS--EEEEEEEH--HHHTTCTTCCS
T ss_pred             hhhhhhhcccceeeEeecccccC----ccccccc---ccccceEEeeecccccCCCC--ceEEEech--hhhhhhccccc
Confidence            36889999999999999999973    2222333   33444889999998744 57  67777775  22221110000


Q ss_pred             ----hhhhhHHhhhhhhh-hccCcchHH-HHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCC--cc
Q 047983           80 ----HSISLNMRMDDYLL-LSESVYTTV-GAVPQILEKT-EEEFFSKITDILREAADICCDRLKEIPCITCPKKPE--GS  150 (233)
Q Consensus        80 ----~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g  150 (233)
                          .............. ....++... .++...+... .+.......++.++..+.+.+.++..+... ...++  +.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~~~~~~rs~  294 (361)
T d1m32a_         216 SLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNT-LLDDELHSP  294 (361)
T ss_dssp             CSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCB-SSCGGGBCS
T ss_pred             cccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcc-cCChhhcCC
Confidence                00000000000000 111222222 2222222222 222345555667777777778877754322 12221  12


Q ss_pred             EEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee--cCHHHHHHHHHHHHHHH
Q 047983          151 MFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA--VEPSAFEIGLGRMKAFY  226 (233)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~--~~~~~l~~~~~~l~~~l  226 (233)
                      ....         +.+|  .....  +...+...|.++||.+.+|... ..+.+|++..  .++++++.+++.|+++|
T Consensus       295 ~v~~---------~~~p--~~~~~--~~~~~~~~l~~~gi~i~~G~~~-~~~~~Ris~~g~~~~~di~~lv~al~~~L  358 (361)
T d1m32a_         295 IITA---------FYSP--EDPQY--RFSEFYRRLKEQGFVIYPGKVS-QSDCFRIGNIGEVYAADITALLTAIRTAM  358 (361)
T ss_dssp             SEEE---------EECC--CCTTC--CHHHHHHHHHHTTEECEECCCS-SSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred             cEEE---------EECC--CCCCC--CHHHHHHHHHHCCcEEECCCcC-CCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence            2222         2233  11122  4555666788899999887532 3578999853  38888999999998765

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.61  E-value=1e-06  Score=73.83  Aligned_cols=188  Identities=15%  Similarity=0.125  Sum_probs=124.6

Q ss_pred             hHHHHHHHcCcEEEEccccC-ccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYG-HLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++.++|++.|.+|+.|-+|. .++-++..+.|+..  .+   |+..|..|++  +|-|-|.+.+.+        ++.   
T Consensus       182 ~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~--aD---vvt~tThKtl--rGPrgg~I~~~~--------~~~---  243 (405)
T d1kl1a_         182 KFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPY--AH---FVTTTTHKTL--RGPRGGMILCQE--------QFA---  243 (405)
T ss_dssp             HHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT--CS---EEEEESSSTT--CCCSCEEEEECH--------HHH---
T ss_pred             HHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhh--hh---heeccccccc--cCCCCceEEecc--------hhH---
Confidence            67899999999999999998 66667655566632  12   6688999976  466778888875        333   


Q ss_pred             hhhhHHhhhhhhh--hccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEec
Q 047983           81 SISLNMRMDDYLL--LSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCG  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  157 (233)
                           .++.....  +..++.... ++++..+..-...+.+...+.+.+|++.|.+.|.+. ++.........-.+|   
T Consensus       244 -----~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~-G~~vv~ggTd~H~vl---  314 (405)
T d1kl1a_         244 -----KQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLL---  314 (405)
T ss_dssp             -----HHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEE---
T ss_pred             -----HHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC-CceeecCCCccceee---
Confidence                 44444333  222222222 555555544344567888899999999999999886 444322323344555   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEE----CCcccC--CCCcEEEEeec------CHHHHHHHHHHHHHH
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVL----PGITVG--LKDWLRITFAV------EPSAFEIGLGRMKAF  225 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~--~~~~~Rl~~~~------~~~~l~~~~~~l~~~  225 (233)
                              +++... ++  +...+.+.|++.||.+.    |+..=+  ..+.+||....      .++++++..+.|.++
T Consensus       315 --------vdl~~~-~~--~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~  383 (405)
T d1kl1a_         315 --------VDLRPQ-QL--TGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLV  383 (405)
T ss_dssp             --------EECGGG-TC--CHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             --------cccccc-CC--cHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHH
Confidence                    444332 22  56777888999999886    432111  14789997662      678888888888887


Q ss_pred             HH
Q 047983          226 YY  227 (233)
Q Consensus       226 l~  227 (233)
                      ++
T Consensus       384 l~  385 (405)
T d1kl1a_         384 LK  385 (405)
T ss_dssp             HT
T ss_pred             Hh
Confidence            74

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.55  E-value=9.1e-07  Score=73.58  Aligned_cols=188  Identities=11%  Similarity=0.010  Sum_probs=99.8

Q ss_pred             hHHHHHHHc--CcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTKKL--GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~~~--~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++.++|+.+  ++.+++|.++.-    +..+..+...+   .-+++.|..|.+|.+|..+.|+.-..   .++.  ..  
T Consensus       160 ~i~~~~~~~~~~~~~~vD~~q~~----g~~~~d~~~~~---~D~~~~s~~K~~gp~G~~~l~~~~~~---~~~p--~~--  225 (376)
T d1eg5a_         160 DVTRIVKKKNKETLVHVDAVQTI----GKIPFSLEKLE---VDYASFSAHKFHGPKGVGITYIRKGV---PIRP--LI--  225 (376)
T ss_dssp             HHHHHHHHHCTTCEEEEECTTTT----TTSCCCCTTTC---CSEEEEEGGGGTSCTTCEEEEECTTS---CCCC--SB--
T ss_pred             hhhhhhhhcccCceeEEEeeecc----ccccccccccC---ccceecccceeecCCCceeEEeccCc---ccCC--cc--
Confidence            466776555  999999988876    32333333333   33899999999999998877764322   1211  11  


Q ss_pred             hhhhhHHhhhhhhhhccCcc-hHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc--cCCCccEEEEE
Q 047983           80 HSISLNMRMDDYLLLSESVY-TTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCP--KKPEGSMFVMY  155 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~g~~~~~  155 (233)
                            ...........+.. ... ...+.... ...................+.+.|.........  .......... 
T Consensus       226 ------~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-  297 (376)
T d1eg5a_         226 ------HGGGQERGLRSGTQNVPGIVGAARAME-IAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSV-  297 (376)
T ss_dssp             ------CSSCTTTTTBCSCCCHHHHHHHHHHHH-HHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEE-
T ss_pred             ------cCCCCcccccCCcccchhhhhHHHHhh-ccccchhhhhhhhhhhhhhhccccccccccccccccccccceeee-
Confidence                  00000111111112 222 11222111 112223344555555666677777664322110  1111122221 


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC-------------------CCcEEEEeec--CHHH
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL-------------------KDWLRITFAV--EPSA  214 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------~~~~Rl~~~~--~~~~  214 (233)
                               .++     ++  ..+.+...|.++||.+++|..+..                   .+++|+|+..  +.++
T Consensus       298 ---------~~~-----~~--~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~ed  361 (376)
T d1eg5a_         298 ---------SFP-----NI--RGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEE  361 (376)
T ss_dssp             ---------ECT-----TC--CHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHH
T ss_pred             ---------ccC-----CC--CHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHH
Confidence                     122     22  456666678899999998865421                   2469999985  7999


Q ss_pred             HHHHHHHHHHHHH
Q 047983          215 FEIGLGRMKAFYY  227 (233)
Q Consensus       215 l~~~~~~l~~~l~  227 (233)
                      ++.+++.|+++++
T Consensus       362 id~l~~~L~~iv~  374 (376)
T d1eg5a_         362 VDYFLKKIEEILS  374 (376)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999875

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=5.1e-07  Score=76.95  Aligned_cols=204  Identities=12%  Similarity=0.046  Sum_probs=102.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcccc-ccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVP-MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|++||+++++|++|+.......+... ...+.  +--++..|.+|.++.|. -.|+++..+.       ...  
T Consensus       214 ~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~vd~~~~s~hK~~~~p~-g~~~l~~~~~-------~~~--  281 (445)
T d3bc8a1         214 EELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG--RIDAFVQSLDKNFMVPV-GGAIIAGFNE-------PFI--  281 (445)
T ss_dssp             HHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHS--CCCEEEEEHHHHHSCCS-SCEEEEESCH-------HHH--
T ss_pred             HHHHHHHHHhCCcEEEEccchhhhhhccccchhccCcC--CcceEEecCccccccCC-CCceeeeCCh-------HHH--
Confidence            37999999999999999999864322111101 11111  11266788899755443 3567777652       222  


Q ss_pred             hhhhhHHhhhhhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCCccEEEEEe
Q 047983           80 HSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIP---CITCPKKPEGSMFVMYC  156 (233)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~  156 (233)
                            ..+........+........+.+.. ...+-.....+...++.+++.+.|+++.   +......+...+..+  
T Consensus       282 ------~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~--  352 (445)
T d3bc8a1         282 ------QDISKMYPGRASASPSLDVLITLLS-LGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLA--  352 (445)
T ss_dssp             ------HHHHHHSCSCBCSHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEE--
T ss_pred             ------HHHHHHHhhcccCcchHHHHHHHHH-HhhhcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceE--
Confidence                  3333222222112222122222211 1222233344444445555555554311   222123344455554  


Q ss_pred             cCCCcccccccccccCCCCChHHHHHHHHhccCEEE----ECC-------ccc---CC------CCcEEEEeec--CHHH
Q 047983          157 GSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIV----LPG-------ITV---GL------KDWLRITFAV--EPSA  214 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v----~pg-------~~f---~~------~~~~Rl~~~~--~~~~  214 (233)
                             +.+........ .+...+...|.+.||..    .++       ..|   +.      ..++|++.+.  ++++
T Consensus       353 -------~~l~~~~~~~~-~~~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eD  424 (445)
T d3bc8a1         353 -------MTLKTIDGHHD-KAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQD  424 (445)
T ss_dssp             -------EECTTTSSSSS-CHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHH
T ss_pred             -------EEeeeccccCC-CCHHHHHHHHHHcCCCcceeeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHH
Confidence                   22221111011 24444444566666621    111       111   11      3568988875  7899


Q ss_pred             HHHHHHHHHHHHHHHhhcC
Q 047983          215 FEIGLGRMKAFYYRHAKKQ  233 (233)
Q Consensus       215 l~~~~~~l~~~l~~~~~~~  233 (233)
                      ++..++.|++++++++++|
T Consensus       425 ID~~v~~L~kilk~~rk~~  443 (445)
T d3bc8a1         425 VDLFIKRLDKCLNIVRKEQ  443 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhh
Confidence            9999999999999997653

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=98.49  E-value=5e-06  Score=68.75  Aligned_cols=199  Identities=14%  Similarity=0.042  Sum_probs=104.1

Q ss_pred             hHHHHHHHcC--cEEEEccccCccccCCCccccccccCCccCEEEEccCcccc-CCCCceEEEEEecCCCccccccchhh
Q 047983            2 CIEETTKKLG--IMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         2 ~i~~l~~~~~--~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      +|.++|++|+  ..+++|-+-+..    ..+.++..++-   -+++.|--|.+ +.||  +|.++.++  ..+++++-. 
T Consensus       141 ~i~~~~~~~~~~~l~~vDavss~g----~~~i~~d~~~i---D~~~~~sqK~l~gppG--~~~v~~s~--~~le~~~~~-  208 (348)
T d1iuga_         141 ALARAFKEKNPEGLVGADMVTSLL----VGEVALEAMGV---DAAASGSQKGLMCPPG--LGFVALSP--RALERLKPR-  208 (348)
T ss_dssp             HHHHHHHHHCTTCEEEEECTTTBT----TBCCCSGGGTC---SEEEEESSSTTCCCSC--EEEEEECH--HHHHTCCCC-
T ss_pred             HHHHHHHhhhccceeechhhhccc----ccccccccccC---CEEEeccccceecCCc--eeeeeech--HHHhhhccc-
Confidence            6788999884  788888877762    22333333332   38899999988 7788  58888877  344321100 


Q ss_pred             hhhhhhHHhhhhh--hhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEE
Q 047983           79 FHSISLNMRMDDY--LLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMY  155 (233)
Q Consensus        79 ~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~  155 (233)
                      ....++.......  ......++... .++...++....+ ..+..++.+.+++.+...++.. ++.....-.+..... 
T Consensus       209 ~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-gl~~~~~~~s~~v~~-  285 (348)
T d1iuga_         209 GYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAA-  285 (348)
T ss_dssp             SSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEE-
T ss_pred             ccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhhhhhhh-hhccChhhcCCeEEE-
Confidence            0000011111111  11111222222 4444444321111 2222233333344444444444 332111100111122 


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee-c-CHHHHHHHHHHHHHHHHHH
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA-V-EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~-~-~~~~l~~~~~~l~~~l~~~  229 (233)
                              +.+|.    ++  +.+.+...|+++||.+.+|..--....+||+.- . +.++++..++.|++++++.
T Consensus       286 --------~~~P~----g~--~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~  347 (348)
T d1iuga_         286 --------FYLPE----GV--PYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI  347 (348)
T ss_dssp             --------EECCT----TC--CHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             --------EECCC----CC--CHHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence                    33442    23  445556777899999988754323568999643 3 7889999999999999874

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=98.45  E-value=6.6e-06  Score=68.30  Aligned_cols=55  Identities=11%  Similarity=-0.039  Sum_probs=44.1

Q ss_pred             ChHHHHHHHHhccCEEEECCcccCCCCcEEEE-eec--CHHHHHHHHHHHHHHHHHHh
Q 047983          176 SDTEFALKLAKEESIIVLPGITVGLKDWLRIT-FAV--EPSAFEIGLGRMKAFYYRHA  230 (233)
Q Consensus       176 ~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~-~~~--~~~~l~~~~~~l~~~l~~~~  230 (233)
                      +..++...+++++||.|.+|......+.+||+ ++.  +.|+++.+++.|+++|+...
T Consensus       326 ~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~  383 (388)
T d2ch1a1         326 DWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH  383 (388)
T ss_dssp             CHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhhC
Confidence            35667677777889999998765456789999 764  68999999999999998753

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=4.4e-07  Score=78.06  Aligned_cols=198  Identities=15%  Similarity=0.010  Sum_probs=98.0

Q ss_pred             hHHHHHHHcCcEEEEccccCcccc--C-----CCccccccc----cCCccCEEEEccCccccCCCCceEEEEEecCCCcc
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVF--G-----NTHFVPMGV----FGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI   70 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~--~-----~~~~~~~~~----~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~   70 (233)
                      +|.++|++||+++++|+++..-..  .     +....++..    +.. ..-++..|.+|..+.  ..-|+++..+  ..
T Consensus       208 ~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~d~~s~s~~K~~~~--~~gg~i~~~~--~~  282 (467)
T d2v1pa1         208 AMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYK-YADMLAMSAKKDAMV--PMGGLLCMKD--DS  282 (467)
T ss_dssp             HHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGG-GCSEEEEESSSTTCC--SSCEEEEECS--GG
T ss_pred             HHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcc-cCCEEEecCCCCCCC--CCceeEEecc--hh
Confidence            689999999999999999753110  0     000111111    111 122556678886544  3446666655  22


Q ss_pred             ccccchhhhhhhhhHHhhhhhhh-----hccCcchHH--HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 047983           71 LQDLGVAFFHSISLNMRMDDYLL-----LSESVYTTV--GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITC  143 (233)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  143 (233)
                      +.  ...        ...+....     .........  .+.+..+...   ...+..+...++.+++.+.|.+.+... 
T Consensus       283 ~~--~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~v-  348 (467)
T d2v1pa1         283 FF--DVY--------TECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDG---MNLDWLAYRIAQVQYLVDGLEEIGVVC-  348 (467)
T ss_dssp             GH--HHH--------HHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHTTCCE-
T ss_pred             hh--hHH--------HhhcccccccccCcchhhhHHHHHHHHHHHhHHh---hhHHHHHHHHHHHHHHHHHHHhcCCcc-
Confidence            21  111        11111111     111111111  2222222111   112333444567788888888763321 


Q ss_pred             ccCCCc-cEEEEEecCCCccccc--ccccccCCCCChHHHHHHHHhccCEEEECCccc-------------CCCCcEEEE
Q 047983          144 PKKPEG-SMFVMYCGSEDKCLLK--LNYSLLEGINSDTEFALKLAKEESIIVLPGITV-------------GLKDWLRIT  207 (233)
Q Consensus       144 ~~~~~~-g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f-------------~~~~~~Rl~  207 (233)
                       .++.+ +.+.-         ..  ++....... .....+.+++.+.||.....+.+             ...+.+|++
T Consensus       349 -~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRla  417 (467)
T d2v1pa1         349 -QQAGGHAAFVD---------AGKLLPHIPADQF-PAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLT  417 (467)
T ss_dssp             -EEECSSCEEEE---------HHHHSTTSCGGGC-HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEC
T ss_pred             -cCCCccceeec---------chhhcCCcchhhh-hhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEe
Confidence             22222 22222         11  111000011 24566777888889865432221             114679998


Q ss_pred             eec---CHHHHHHHHHHHHHHHHHH
Q 047983          208 FAV---EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       208 ~~~---~~~~l~~~~~~l~~~l~~~  229 (233)
                      +..   ++++++.+.+.|+++.++.
T Consensus       418 ip~~~~T~eeiD~vv~~l~~v~~~~  442 (467)
T d2v1pa1         418 IPRATYTQTHMDFIIEAFKHVKENA  442 (467)
T ss_dssp             CCTTTCCHHHHHHHHHHHHHHHHTG
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            763   7899999999999988654

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=1.9e-06  Score=71.63  Aligned_cols=198  Identities=16%  Similarity=0.127  Sum_probs=99.3

Q ss_pred             hHHHHHHHc--CcEEEEccccCccccCCCccccccccCCccCEEEEccCcccc-CCCCceEEEEEecCCCccccccchhh
Q 047983            2 CIEETTKKL--GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         2 ~i~~l~~~~--~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      ++.+.|+++  ++++++|-+.+-    |..+..+..++-   -+++.|-.|.+ +.+|  +|+++.++  ..++++.-..
T Consensus       156 ~~~~~~~~~~~~~~~~vDa~qs~----g~~pid~~~~gi---D~~~~s~~K~l~gP~G--~g~l~vs~--~~~~~~~~~~  224 (382)
T d2bkwa1         156 AISQAIKQTSPETFFVVDAVCSI----GCEEFEFDEWGV---DFALTASQKAIGAPAG--LSISLCSS--RFMDYALNDS  224 (382)
T ss_dssp             HHHHHHHHHCTTSEEEEECTTTT----TTSCCCTTTTTC---SEEEEESSSTTCCCSC--EEEEEECH--HHHHHHTCHH
T ss_pred             hhhhhccccccceeeeeeccccc----ccccccccccCe---eEEeecccccCcCCCc--hhhhhccH--HHHhhhhhcc
Confidence            456677766  599999999887    333334433333   38899999987 6788  78888877  3332100000


Q ss_pred             hh--hh-------hhHHhhhhh---hhhccC-cchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 047983           79 FH--SI-------SLNMRMDDY---LLLSES-VYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCP  144 (233)
Q Consensus        79 ~~--~~-------~~~~~~~~~---~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  144 (233)
                      ..  ..       .........   .....+ ++... .++...++.-..+-.....++.++..+++++.+....+....
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~  304 (382)
T d2bkwa1         225 KNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSV  304 (382)
T ss_dssp             HHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEES
T ss_pred             cCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccccccc
Confidence            00  00       000000000   001112 22222 333333322222334445555666777777777653222211


Q ss_pred             cC-CCc----cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC-CCCcEEEE-eec--CHHHH
Q 047983          145 KK-PEG----SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG-LKDWLRIT-FAV--EPSAF  215 (233)
Q Consensus       145 ~~-~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~Rl~-~~~--~~~~l  215 (233)
                      .. +..    +.. .         +.++         +...+...|+++||.+.+|..-. ....+||+ ++.  +++++
T Consensus       305 ~~~~~~~~s~~v~-~---------~~~~---------~~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i  365 (382)
T d2bkwa1         305 SRYPSNMSAHGLT-A---------VYVA---------DPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNL  365 (382)
T ss_dssp             SCSSSTTBCSSCE-E---------EECS---------CHHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTC
T ss_pred             ccCchhccCCcEE-E---------EcCC---------CHHHHHHHHHHCCeEEECCCChhhcCCEEEEeCCcCCCCHHHH
Confidence            11 111    211 2         1222         33445677889999999874321 24679998 653  45555


Q ss_pred             HHHHHHHHHHHHHH
Q 047983          216 EIGLGRMKAFYYRH  229 (233)
Q Consensus       216 ~~~~~~l~~~l~~~  229 (233)
                      +.+++.|..+...+
T Consensus       366 ~~l~~~l~~i~~~L  379 (382)
T d2bkwa1         366 PYMKNCFDLIKLAL  379 (382)
T ss_dssp             THHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555444433

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.39  E-value=6.8e-06  Score=70.03  Aligned_cols=195  Identities=14%  Similarity=0.101  Sum_probs=125.3

Q ss_pred             hHHHHHHHcCcEEEEccccC-ccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCcccc--------
Q 047983            2 CIEETTKKLGIMVIADEVYG-HLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQ--------   72 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~--------   72 (233)
                      ++.++|++.|.+|+.|-+|. .++-++..+.|+...  +   |+.+|..|++  +|-|-|.|.+.++..-++        
T Consensus       199 ~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~a--D---vvt~tTHKtl--rGPrgGiI~~~~~~~~~~~~~~~~~~  271 (470)
T d1rv3a_         199 RLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHC--H---VVTTTTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEIL  271 (470)
T ss_dssp             HHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTC--S---EEEEESSGGG--CCCSCEEEEEECSBCC-------CCB
T ss_pred             HHHHHHhccCCeEEecchhhhhhccccccCChhhee--e---eeeeehhhhc--cCCcceEEEEccccccccccccchhH
Confidence            68899999999999999998 666666556666422  2   8899999976  466678888875200000        


Q ss_pred             ccchhhhhhhhhHHhhhhhhh--hccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCc
Q 047983           73 DLGVAFFHSISLNMRMDDYLL--LSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEG  149 (233)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  149 (233)
                      . ++.        .++.....  +..++.... ++++..+..-.....++..+.+.+|.+.|.+.|.+. ++........
T Consensus       272 ~-~~~--------~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~-G~~v~~ggTd  341 (470)
T d1rv3a_         272 Y-NLE--------SLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSD  341 (470)
T ss_dssp             C-CHH--------HHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCS
T ss_pred             H-HHH--------HHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCC
Confidence            0 122        44444332  222222222 555555543334466888999999999999999886 4433233334


Q ss_pred             cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEE----CCcccCC-CCcEEEEeec------CHHHHHHH
Q 047983          150 SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVL----PGITVGL-KDWLRITFAV------EPSAFEIG  218 (233)
Q Consensus       150 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~~-~~~~Rl~~~~------~~~~l~~~  218 (233)
                      .-.++           +++... ++  +...+.+.|++.||.+.    |+..-+. .+.+||....      .++++++.
T Consensus       342 nHlvl-----------vdl~~~-g~--~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~i  407 (470)
T d1rv3a_         342 NHLIL-----------VDLRSK-GT--DGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKV  407 (470)
T ss_dssp             SSEEE-----------EEGGGG-TC--CHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHH
T ss_pred             CceEE-----------Eeeccc-CC--cHHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHHhCCCCHHHHHHH
Confidence            55555           444332 33  56778888999999885    4442111 5779997662      67888888


Q ss_pred             HHHHHHHHH
Q 047983          219 LGRMKAFYY  227 (233)
Q Consensus       219 ~~~l~~~l~  227 (233)
                      .+.|.++++
T Consensus       408 A~~I~~~l~  416 (470)
T d1rv3a_         408 AHFIHRGIE  416 (470)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877774

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=98.37  E-value=1.8e-06  Score=74.14  Aligned_cols=199  Identities=16%  Similarity=0.104  Sum_probs=104.3

Q ss_pred             hHHHHHHHcCcEEEEccccCccc--cC-----CCcccccccc----CCccCEEEEccCccccCCCCceEEEEEecCCCcc
Q 047983            2 CIEETTKKLGIMVIADEVYGHLV--FG-----NTHFVPMGVF----GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI   70 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~--~~-----~~~~~~~~~~----~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~   70 (233)
                      +|.++|++||+.++.|.+...-.  +.     +-...++..+    ...-. ++..|++|.++.++  -|+++++++ .+
T Consensus       199 ~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad-~~s~s~~K~~~~~~--GG~i~~~~~-~l  274 (456)
T d1c7ga_         199 AVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYAD-GCTMSGKKDCLVNI--GGFLCMNDE-EM  274 (456)
T ss_dssp             HHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCS-EEEEETTTTTCCSS--CEEEEESCH-HH
T ss_pred             HHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccc-cEEEeccccccccc--eeEEEcCCH-HH
Confidence            67899999999999999975311  00     0011122111    11112 55569999877653  177777662 23


Q ss_pred             ccccchhhhhhhhhHHhhhhhhhh-ccCcchHH--HHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC
Q 047983           71 LQDLGVAFFHSISLNMRMDDYLLL-SESVYTTV--GAVPQILEK-TEEEFFSKITDILREAADICCDRLKEIPCITCPKK  146 (233)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  146 (233)
                      .++  ..        ......... +.+.....  .+++.-+.. ...++    .+.-.++.+++.+.|++. +... ..
T Consensus       275 ~~~--~r--------~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~----l~~r~~~~~~L~e~L~~~-g~~v-v~  338 (456)
T d1c7ga_         275 FSA--AK--------ELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEY----IEHRVKQVRYLGDKLREA-GVPI-VE  338 (456)
T ss_dssp             HHH--HH--------HHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHHHHHHHHT-TCCB-CS
T ss_pred             HHH--HH--------HhccccCCCcccchhhHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHhc-cCCc-cc
Confidence            321  11        111111111 11112211  222221211 11222    233355667888888886 4443 56


Q ss_pred             CCccEEEEEecCCCccccccc--ccccCCC-CChHHHHHHHHhccCEEEECCcccC-------------CCCcEEEEeec
Q 047983          147 PEGSMFVMYCGSEDKCLLKLN--YSLLEGI-NSDTEFALKLAKEESIIVLPGITVG-------------LKDWLRITFAV  210 (233)
Q Consensus       147 ~~~g~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~-------------~~~~~Rl~~~~  210 (233)
                      |.++....         +...  ++..+.. .....++..++.+.||...+...+.             ....+|+++..
T Consensus       339 p~g~~~v~---------vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~  409 (456)
T d1c7ga_         339 PTGGHAVF---------LDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPR  409 (456)
T ss_dssp             SCCSSEEE---------EEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCT
T ss_pred             CCCCccee---------EechhhccCCCcccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCc
Confidence            77777666         2111  0100000 1255777888888999865532221             13469999873


Q ss_pred             ---CHHHHHHHHHHHHHHHHHH
Q 047983          211 ---EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       211 ---~~~~l~~~~~~l~~~l~~~  229 (233)
                         ++++++.+.+.|.++.++.
T Consensus       410 ~~~T~e~iD~Vae~i~~v~~~~  431 (456)
T d1c7ga_         410 RVYTYAHMDVVADGIIKLYQHK  431 (456)
T ss_dssp             TSCCHHHHHHHHHHHHHHHTTG
T ss_pred             ccCCHHHHHHHHHHHHHHHhhh
Confidence               7899999999998887643

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=1.8e-05  Score=66.08  Aligned_cols=114  Identities=14%  Similarity=0.157  Sum_probs=68.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC-CCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+|..+..-.+-    .|+ .++.+   |++.|.||.+++ ...=.|.++++++ .+.        
T Consensus       155 ~~i~~ia~~~g~~~vVDNT~atP~~~----~Pl-~~GaD---iVvhS~TKyi~Ghsdv~~G~vv~~~~-~~~--------  217 (384)
T d1cs1a_         155 AKICHLAREVGAVSVVDNTFLSPALQ----NPL-ALGAD---LVLHSCTKYLNGHSDVVAGVVIAKDP-DVV--------  217 (384)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTCTTTC----CGG-GGTCS---EEEEETTTTTTCSSCCCCEEEEESSH-HHH--------
T ss_pred             HHHhhhhhhcCcEEEEeccccCcccc----ccc-ccCCC---EEEEccccccccCCCcccccccCCch-hhh--------
Confidence            36889999999999999999642211    122 23443   889999998854 4455566666552 222        


Q ss_pred             hhhhhHHhhhhh-hhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           80 HSISLNMRMDDY-LLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        80 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                            ..+... ..++...++.    .+++-...-+.+.-+.++..++...+.+.|+..|.+
T Consensus       218 ------~~~~~~~~~~G~~~~p~----~a~ll~rgL~TL~lRm~~~~~nA~~lA~~L~~hp~V  270 (384)
T d1cs1a_         218 ------TELAWWANNIGVTGGAF----DSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLV  270 (384)
T ss_dssp             ------HHHHHHHHHHTCBCCHH----HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred             ------hhhhhhhhhhhhccccc----cHHHHhhccchhHHHHHHHHHHHHHHHHhcccCCce
Confidence                  222221 1223222332    222222344556677788889999999999886543

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.33  E-value=1.2e-05  Score=67.41  Aligned_cols=113  Identities=12%  Similarity=0.056  Sum_probs=67.4

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCce-EEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWR-LGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R-~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+|..+..-..    ..|+ .++.+   |++.|+||.+++-+== .|.++.++  .+.        
T Consensus       173 ~~ia~ia~~~g~~~vVDnT~atP~~----~~Pl-~~GaD---iVihS~TKy~~Ghsdv~~G~v~~~~--~~~--------  234 (398)
T d1qgna_         173 ELVSKLCHEKGALVCIDGTFATPLN----QKAL-ALGAD---LVLHSATKFLGGHNDVLAGCISGPL--KLV--------  234 (398)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTCTTT----CCTT-TTTCS---EEEECTTTTTTCSSSCCCEEEEECH--HHH--------
T ss_pred             HHHHHHHhhcCCEEEecceeecccc----CCch-hhCCC---EEEEechhhcCcccceeehhhcchh--hhh--------
Confidence            3689999999999999999874221    1122 23343   8899999988664433 45454443  222        


Q ss_pred             hhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           80 HSISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                            ...+.... ++...++.    .+++-..+-+-+.-+.++..+|...+.+.|++.|.+
T Consensus       235 ------~~~~~~~~~~G~~l~p~----~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V  287 (398)
T d1qgna_         235 ------SEIRNLHHILGGALNPN----AAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV  287 (398)
T ss_dssp             ------HHHHHHHHHHCCCCCHH----HHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             ------hhhhhhcccCCCcCCHH----HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence                  23332222 33333332    111112233456667788888999999999886543

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=98.30  E-value=2.3e-05  Score=65.24  Aligned_cols=196  Identities=12%  Similarity=0.033  Sum_probs=101.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhh--
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAF--   78 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~--   78 (233)
                      ++|+++|+++++.+++|-++..-    ..+..+..++.   .++..|..|.+..+..-.|++..++  ...+.+....  
T Consensus       184 ~~i~~~~~~~~~~~~vD~~q~~g----~~~~~~~~~~~---d~~~~s~~K~~~~~~g~~g~~~~~~--~~~~~~~~~~~~  254 (404)
T d1qz9a_         184 QALTALSHECGALAIWDLAHSAG----AVPVDLHQAGA---DYAIGCTYKYLNGGPGSQAFVWVSP--QLCDLVPQPLSG  254 (404)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTT----TSCCCHHHHTC---SEEEECSSSTTCCCTTCCCEEEECT--TTTTTSCCSCCC
T ss_pred             HHHhccccccccceeEEeecccc----ccccccccccc---eEEEEechhhcccCCceEEEEEech--hhhhhCCccccc
Confidence            47899999999999999998873    22233333333   3778888897655444457777765  2322111100  


Q ss_pred             --hhhhhhH--Hhhh---hhhhh-ccCcchHH-HHH---HHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC
Q 047983           79 --FHSISLN--MRMD---DYLLL-SESVYTTV-GAV---PQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKK  146 (233)
Q Consensus        79 --~~~~~~~--~~~~---~~~~~-~~~~~~~~-~~~---~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  146 (233)
                        .++....  ....   ..... ........ ...   ...+.......+.+....+.+....+...+...+++.. ..
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i-~~  333 (404)
T d1qz9a_         255 WFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTL-VT  333 (404)
T ss_dssp             GGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEE-CS
T ss_pred             cCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCEEE-EC
Confidence              0000000  0000   00001 11111111 111   11121222334444444444444445555555445543 22


Q ss_pred             CC-----ccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEee---cCHHHHHHH
Q 047983          147 PE-----GSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFA---VEPSAFEIG  218 (233)
Q Consensus       147 ~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~---~~~~~l~~~  218 (233)
                      |.     ++. +.         +.++         +...+.+.|.++||.+..    -..+.+|+|++   .++++++.+
T Consensus       334 p~~~~~r~~~-vs---------f~~~---------~~~~v~~~L~~~gi~~~~----r~~~~lRiS~~h~ynt~~did~~  390 (404)
T d1qz9a_         334 PREHAKRGSH-VS---------FEHP---------EGYAVIQALIDRGVIGDY----REPRIMRFGFTPLYTTFTEVWDA  390 (404)
T ss_dssp             CSSGGGBCSE-EE---------EECT---------THHHHHHHHHTTTEECEE----ETTTEEEEECCTTTCCHHHHHHH
T ss_pred             CCCccceeeE-EE---------EecC---------CHHHHHHHHHHCCCEEee----cCCCeEEEECCCCCCCHHHHHHH
Confidence            22     233 23         2222         344456667889996521    12468999996   278999999


Q ss_pred             HHHHHHHHHHH
Q 047983          219 LGRMKAFYYRH  229 (233)
Q Consensus       219 ~~~l~~~l~~~  229 (233)
                      ++.|++++++.
T Consensus       391 ~~~L~~vl~~~  401 (404)
T d1qz9a_         391 VQILGEILDRK  401 (404)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            99999999764

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.30  E-value=1.6e-05  Score=67.51  Aligned_cols=196  Identities=16%  Similarity=0.111  Sum_probs=126.0

Q ss_pred             hHHHHHHHcCcEEEEccccC-ccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccc-------
Q 047983            2 CIEETTKKLGIMVIADEVYG-HLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD-------   73 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~-------   73 (233)
                      ++.++|++.|.+|++|-+|. .++-++..+.|+..  .+   |+.+|..|+|  +|-|-|.|.+.+...-++.       
T Consensus       195 ~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~--aD---vvt~tTHKTl--rGPrgGiIl~~~~~~~~~~~~~~~~~  267 (463)
T d2a7va1         195 RMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH--AD---IVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIP  267 (463)
T ss_dssp             HHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGT--CS---EEEEESSGGG--CSCSCEEEEEECSEEEEETTTEEEEE
T ss_pred             HHHHHhhcccceEEechhhhhHHhhhhhhcChhhh--hh---hhhchhhhhh--cCCCceEEEEcccccccccccCccch
Confidence            68899999999999999998 66666666666642  12   7788999975  5677788888762100000       


Q ss_pred             cchhhhhhhhhHHhhhhhhh--hccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcc
Q 047983           74 LGVAFFHSISLNMRMDDYLL--LSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGS  150 (233)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g  150 (233)
                      .++.        .++.....  +..++.... ++++..+........++..+.+.+|.+.|.+.|.+. ++.........
T Consensus       268 ~~~~--------~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~vv~ggTdn  338 (463)
T d2a7va1         268 YTFE--------DRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDN  338 (463)
T ss_dssp             CCCH--------HHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSS
T ss_pred             hHHH--------HHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCC
Confidence            0122        44444333  222222222 555555543344567888899999999999999886 44333344445


Q ss_pred             EEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEE----CCcccC-CCCcEEEEeec------CHHHHHHHH
Q 047983          151 MFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVL----PGITVG-LKDWLRITFAV------EPSAFEIGL  219 (233)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~-~~~~~Rl~~~~------~~~~l~~~~  219 (233)
                      -.++           +++... ++  +-..+.+.|++.||.+.    |+..-+ ..+.+||....      .++++++..
T Consensus       339 Hlvl-----------vdl~~~-~~--~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA  404 (463)
T d2a7va1         339 HLVL-----------VDLRPK-GL--DGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVV  404 (463)
T ss_dssp             SEEE-----------EECTTT-TC--CHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHH
T ss_pred             ceee-----------eecccc-CC--CHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHH
Confidence            5666           454322 22  67788888999999985    433211 15679997662      578888888


Q ss_pred             HHHHHHHH
Q 047983          220 GRMKAFYY  227 (233)
Q Consensus       220 ~~l~~~l~  227 (233)
                      +.|.+++.
T Consensus       405 ~~I~~~l~  412 (463)
T d2a7va1         405 DFIDEGVN  412 (463)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88877765

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.26  E-value=8.5e-06  Score=70.18  Aligned_cols=208  Identities=9%  Similarity=0.022  Sum_probs=113.1

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCcc-ccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|.++|++||+|+-+|-+|+.+..-.... ..+..+..-|  -+..++.|.+ ..-.-+|.+..++...+..   ....
T Consensus       255 ~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aD--Sit~d~HK~l-~~P~~~g~~l~r~~~~~~~---~~~~  328 (476)
T d1js3a_         255 LEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFAD--SFNFNPHKWL-LVNFDCSAMWVKRRTDLTG---AFKL  328 (476)
T ss_dssp             HHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCS--EEEECHHHHS-SCCSSCEEEEESCHHHHHG---GGC-
T ss_pred             HHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccc--eeeecCcccc-ccCCcceeecccchHHHHH---HHhc
Confidence            479999999999999999999765433322 2222222211  3345778984 4445678888876321111   0000


Q ss_pred             hhhhhHHhhh------hhhhhccCcchHHHHHH--HHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccE
Q 047983           80 HSISLNMRMD------DYLLLSESVYTTVGAVP--QILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSM  151 (233)
Q Consensus        80 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~  151 (233)
                      ....+.....      .+...+........++.  ..+..-+.+-+++..+..-+..+++.+.|++.+++....+|+-+.
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~i  408 (476)
T d1js3a_         329 DPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGL  408 (476)
T ss_dssp             -----------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSE
T ss_pred             ChhhhccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceEE
Confidence            0000000000      00011110011112222  222233456677777778888999999999988887656777666


Q ss_pred             EEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCCCCcEEEEeec---CHHHHHHHHHHHHHHHHH
Q 047983          152 FVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAV---EPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~---~~~~l~~~~~~l~~~l~~  228 (233)
                      .+|          +.....  .  -+.....++.++..+.+.+ ....+..++|+++..   ++++++.+++.|++..++
T Consensus       409 V~F----------r~~~~d--~--~n~~l~~~l~~~G~~~~s~-t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~  473 (476)
T d1js3a_         409 VCF----------RLKGSD--G--LNEALLERINSARKIHLVP-CRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAE  473 (476)
T ss_dssp             EEE----------EESSCH--H--HHHHHHHHHHHHTSCBCEE-EEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEE----------EccCCh--H--HHHHHHHHHHhcCCEEEee-eeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            444          221100  0  0234444544443344444 222334589999873   688899999999988776


Q ss_pred             H
Q 047983          229 H  229 (233)
Q Consensus       229 ~  229 (233)
                      .
T Consensus       474 l  474 (476)
T d1js3a_         474 L  474 (476)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=98.22  E-value=1e-05  Score=67.86  Aligned_cols=114  Identities=17%  Similarity=0.188  Sum_probs=70.9

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccC-CCCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWI-VPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      .|+++|+++|+++|+|..|..-.+.    .|+ .++.+   |++.|.||..+ ....=.|.+++++  ..+++       
T Consensus       165 ~i~~ia~~~g~~~vvDnT~atP~~~----~Pl-~~GaD---ivihS~TKyi~Ghsd~~~G~v~~~~--~~~~~-------  227 (392)
T d1gc0a_         165 GVAKIARKHGATVVVDNTYCTPYLQ----RPL-ELGAD---LVVHSATKYLSGHGDITAGIVVGSQ--ALVDR-------  227 (392)
T ss_dssp             HHHHHHGGGTCEEEEECTTTHHHHC----CGG-GGTCS---EEEEETTTTTTCSSSCCCEEEEECH--HHHHH-------
T ss_pred             HHHHHHHhcCCEEEEecCccCcccc----ChH-HhCCC---EEEEecceeecCCcccccccccchh--HHHHH-------
Confidence            6899999999999999999852221    122 24443   89999999885 4666677777766  22211       


Q ss_pred             hhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           81 SISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                           .+...... .+....+.    .+++-...-+.+..+.++..++...+.+.|++.|.+
T Consensus       228 -----~r~~~~~~~~G~~~~p~----da~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V  280 (392)
T d1gc0a_         228 -----IRLQGLKDMTGAVLSPH----DAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQV  280 (392)
T ss_dssp             -----HHHTHHHHHTCCCCCHH----HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             -----HHHHHHHHccCCcCChh----hHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence                 11122222 23333332    222222344566777788888999999999886543

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.21  E-value=1.9e-05  Score=65.86  Aligned_cols=113  Identities=15%  Similarity=0.035  Sum_probs=69.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC-CCceEEEEEecCCCccccccchhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++|+++|+++|+++|+|..+..-..    ..|+. ++.+   |++.|+||.+++ ...=.|.++.++. .+.        
T Consensus       153 ~~i~~iA~~~g~~~vVDnT~atP~~----~~Pl~-~GaD---iVvhS~TKyi~GhsDv~~G~v~~~~~-~~~--------  215 (380)
T d1ibja_         153 RKISEMAHAQGALVLVDNSIMSPVL----SRPLE-LGAD---IVMHSATKFIAGHSDVMAGVLAVKGE-KLA--------  215 (380)
T ss_dssp             HHHHHHHHTTTCEEEEECTTTCTTT----CCGGG-TTCS---EEEEETTTTTTCSSCCCCEEEEECSH-HHH--------
T ss_pred             HHHHHHHHHcCCeEEeecccccccc----ccccc-cCCC---EEEecccceeccccCccccccccchh-hHH--------
Confidence            3689999999999999999975221    11232 3343   899999998865 4444566666542 222        


Q ss_pred             hhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047983           80 HSISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPC  140 (233)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  140 (233)
                            ..++.... .+....+.    .+++-...-+.+..+.++..+|...+.+.|++.|.
T Consensus       216 ------~~~~~~~~~~G~~l~p~----~a~ll~rgl~Tl~lRm~~~~~nA~~lA~~L~~hp~  267 (380)
T d1ibja_         216 ------KEVYFLQNSEGSGLAPF----DCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPR  267 (380)
T ss_dssp             ------HHHHHHHHHTTCBCCHH----HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             ------HHHHhhccccCCcCCHH----HHHHHHhcchhhhhhHHHHHHHHHHHHHHHHhCCC
Confidence                  22332222 23222332    22222234456677778888899999999987654

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=98.21  E-value=3.7e-05  Score=64.40  Aligned_cols=114  Identities=13%  Similarity=0.084  Sum_probs=67.7

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC-CCceEEEEEecCCCccccccchhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      +|+++|+++|+++|+|..+..-.    ...|+ .++.+   |++.|++|..++ ...=.|.+++++  +.+.+       
T Consensus       169 ~i~~iA~~~gi~~vvDnT~atP~----~~~Pl-~~GaD---ivihS~TKyi~Ghsdvl~G~v~~~~--~~~~~-------  231 (397)
T d1y4ia1         169 TVAGIAHQQGALLVVDNTFMSPY----CQQPL-QLGAD---IVVHSVTKYINGHGDVIGGIIVGKQ--EFIDQ-------  231 (397)
T ss_dssp             HHHHHHHHTTCEEEEECTTTCTT----TCCGG-GGTCS---EEEEETTTTTTCSSCCCCEEEEECH--HHHHH-------
T ss_pred             HHHHHhhcCCceEEecCcccCcc----cCcch-hcCCC---EEEEehhhhcCCCcceeeeccCCCH--HHHHH-------
Confidence            68899999999999999987522    11223 23443   999999998855 444445555554  22211       


Q ss_pred             hhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           81 SISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                           .++..+.. .+...++.    .+++-..+-+-+.-+.++-.++...+.+.|++.|.+
T Consensus       232 -----~r~~~~~~~~G~~l~p~----~a~l~~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V  284 (397)
T d1y4ia1         232 -----ARFVGLKDITGGCMSPF----NAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSI  284 (397)
T ss_dssp             -----HHHTHHHHTTCCCCCHH----HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             -----HHHHHHHhCcCCcCCHH----HHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence                 12222222 23333333    222212334456666777888899999999886543

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=98.12  E-value=2e-05  Score=64.83  Aligned_cols=50  Identities=18%  Similarity=0.068  Sum_probs=38.4

Q ss_pred             hHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHH
Q 047983          177 DTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       177 ~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~  228 (233)
                      +.+.+...|+++||.+.+|..  .-+-+|+++..  +.|+++.+++.|+++.++
T Consensus       308 ~~~~~~~~L~~~GI~~~~G~~--~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~  359 (361)
T d2c0ra1         308 LEKEFVKASEQEGFVGLKGHR--SVGGLRASIYNAVPYESCEALVQFMEHFKRS  359 (361)
T ss_dssp             HHHHHHHHHHHTTEESCBCCT--TTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHCCCEEecCCC--cCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            456778889999999988743  22349999886  889998888888776554

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=1.9e-05  Score=67.42  Aligned_cols=208  Identities=16%  Similarity=0.049  Sum_probs=113.9

Q ss_pred             HHHHHcCcEEEEccccCcccc--CCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhhh
Q 047983            5 ETTKKLGIMVIADEVYGHLVF--GNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHSI   82 (233)
Q Consensus         5 ~l~~~~~~~lI~De~y~~~~~--~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~   82 (233)
                      +.|+++|+++.+|-+|+.+..  ..+......  .-..---...|..|. +.+-.-+||+...+...+...  +. .+..
T Consensus       229 ~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~--~~~~aDSi~~s~HK~-~~~p~g~g~l~~r~~~~~~~~--~~-~~~~  302 (450)
T d1pmma_         229 QADTGIDIDMHIDAASGGFLAPFVAPDIVWDF--RLPRVKSISASGHKF-GLAPLGCGWVIWRDEEALPQE--LV-FNVD  302 (450)
T ss_dssp             HHHHCCCCCEEEECTTGGGTHHHHCTTCCCST--TSTTEEEEEEETTTT-TCCCSSCEEEEESSGGGSCGG--GC-EEEE
T ss_pred             HHHhccCcEEEeehhhccceeeeechhhhhhh--cccceeEeecChhhc-cCCCCCeeEEEecChhhhhhh--cc-cccC
Confidence            346678999999999987542  222111111  111112566788997 555566999999875222211  10 0000


Q ss_pred             hhHHhhhhhhhhccCcc-hHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc--CCCc--cEEEEEec
Q 047983           83 SLNMRMDDYLLLSESVY-TTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPK--KPEG--SMFVMYCG  157 (233)
Q Consensus        83 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~--g~~~~~~~  157 (233)
                      -+...... .++..+.+ ....++...+...+.+-.++..+...+..+++.+.|++.+++....  .|+.  +...|   
T Consensus       303 yl~~~~~~-~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~F---  378 (450)
T d1pmma_         303 YLGGQIGT-FAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCF---  378 (450)
T ss_dssp             ETTEEEEE-CCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEE---
T ss_pred             cCCCCcCC-CcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEE---
Confidence            00000000 11111222 1212222223233456678888889999999999999987655322  2222  22222   


Q ss_pred             CCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccCC----CCcEEEEeec--CHHHHHHHHHHHHHHHHHHhh
Q 047983          158 SEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVGL----KDWLRITFAV--EPSAFEIGLGRMKAFYYRHAK  231 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~~~  231 (233)
                             ++......+.  +...+.+.|.++|..|. ...+.+    ...+|+.+..  +.+.++..++.|++.+++..+
T Consensus       379 -------r~~~~~~~~~--~~~~l~~~L~~~Gw~v~-~~~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l~~  448 (450)
T d1pmma_         379 -------KLKDGEDPGY--TLYDLSERLRLRGWQVP-AFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD  448 (450)
T ss_dssp             -------EECTTCCCSS--CHHHHHHHHHTTTCBCC-EEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------ecCCcccCCC--CHHHHHHHHHHcCCeee-ccCcCCCcCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence                   2221111122  45556677888897653 222222    2469998885  788899999999999988765


Q ss_pred             c
Q 047983          232 K  232 (233)
Q Consensus       232 ~  232 (233)
                      +
T Consensus       449 ~  449 (450)
T d1pmma_         449 H  449 (450)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=0.00019  Score=59.94  Aligned_cols=112  Identities=12%  Similarity=0.142  Sum_probs=66.2

Q ss_pred             hHHHHHHHc--CcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCC-CceEEEEEecCCCccccccchhh
Q 047983            2 CIEETTKKL--GIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVP-GWRLGWLVTSDPNGILQDLGVAF   78 (233)
Q Consensus         2 ~i~~l~~~~--~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~R~G~~~~~~~~~~~~~~~~~~   78 (233)
                      +|+++|+++  |+++|+|..+.....-    .|+. ++.+   |++.|+||.+++- ..=.|.++.++  ...       
T Consensus       164 ~i~~~a~~~~~g~~~vVDnT~atP~~~----~Pl~-~GaD---ivvhS~TKy~~GhsdvlgG~vv~~~--~~~-------  226 (391)
T d1cl1a_         164 AIVAAVRSVVPDAIIMIDNTWAAGVLF----KALD-FGID---VSIQAATKYLVGHSDAMIGTAVCNA--RCW-------  226 (391)
T ss_dssp             HHHHHHHHHCTTCEEEEECTTTTTTSS----CGGG-GTCS---EEEEETTTTTTCSSSCCCEEEEECT--TTH-------
T ss_pred             HHHHHHHhccCCcEEEEeccccchhhh----cccc-cccc---eEEeecchhccccccccccceeccc--ccc-------
Confidence            567788764  9999999999763321    1232 3333   8899999988653 34456666555  233       


Q ss_pred             hhhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           79 FHSISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                             ..+..... .+....+.    .+++-...-+.+.-+.++..++...+.+.|++.|.+
T Consensus       227 -------~~~~~~~~~~G~~~~p~----~a~ll~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V  279 (391)
T d1cl1a_         227 -------EQLRENAYLMGQMVDAD----TAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQV  279 (391)
T ss_dssp             -------HHHHHHHHHTTCCCCHH----HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             -------ccchhhhhcccccCCch----hhhhhhccchhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence                   22222222 22222222    222222344556677778888999999999886543

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=97.91  E-value=0.00024  Score=59.37  Aligned_cols=112  Identities=15%  Similarity=0.133  Sum_probs=66.5

Q ss_pred             hHHHHHH-HcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC-CCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETTK-KLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~~-~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      ++++.++ ++++++|+|..+..-..    ..|+ .++.+   |++.|.||.+++ ..+=.|.+++++  +.      .  
T Consensus       165 ~~~~~~~~~~g~~vvvDnT~atP~~----~~Pl-~~GaD---iVvhS~TKy~~GhsDv~~G~v~~~~--~~------~--  226 (394)
T d1e5ea_         165 RVCKDAHSQEGVLVIADNTFCSPMI----TNPV-DFGVD---VVVHSATKYINGHTDVVAGLICGKA--DL------L--  226 (394)
T ss_dssp             HHHHHHHTSTTCEEEEECTTTCTTT----CCGG-GGTCS---EEEEETTTTTTCSSCCCCEEEEECH--HH------H--
T ss_pred             hhhhccccccCeEEEecCcccCccc----CCch-hcCCC---EEEechhhhcCCCcccccccccchh--hH------H--
Confidence            3566555 46899999999975221    1122 23443   899999998855 555566666655  22      2  


Q ss_pred             hhhhhHHhhh--hhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           80 HSISLNMRMD--DYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        80 ~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                            ...+  .... ++...++.    .+++-..+-+.+.-+.++..++...+.+.|++.|.+
T Consensus       227 ------~~~~~~~~~~~~G~~lsp~----~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V  281 (394)
T d1e5ea_         227 ------QQIRMVGIKDITGSVISPH----DAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAV  281 (394)
T ss_dssp             ------HHHHHTCCCCCCCCCCCHH----HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             ------HHHHHHHHHHhhCCCCChH----HHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence                  2221  1111 23223332    222223445566777888889999999999886543

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=97.86  E-value=0.00033  Score=58.91  Aligned_cols=128  Identities=16%  Similarity=0.139  Sum_probs=67.8

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCC-ceEEEEEecCCCccccccch--h-
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDLGV--A-   77 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~R~G~~~~~~~~~~~~~~~~--~-   77 (233)
                      .|+++|+++|+++|+|..+..-.+   ...|+ .++.+   |++.|.||.+++-+ .=.|.++..+. ...+..+.  . 
T Consensus       165 ~i~~iA~~~g~~~vvDnT~a~tP~---~~~Pl-~~GaD---iVvhS~TKyl~GHsD~l~G~vv~~~~-~~~~~~r~~~~~  236 (421)
T d2ctza1         165 ALAQAAREKGVALIVDNTFGMGGY---LLRPL-AWGAA---LVTHSLTKWVGGHGAVIAGAIVDGGN-FPWEGGRYPLLT  236 (421)
T ss_dssp             HHHHHHHHHTCEEEEECGGGGGGT---SCCGG-GGTCS---EEEEETTTTTTCSSCCCCEEEEECSC-SCCTTTTCHHHH
T ss_pred             HHHHHHHhcCCceEecccccccce---ecccc-ccCCc---EEEEechhhccCCCCeEEEEEEcCCc-chhhhccccccc
Confidence            689999999999999999973110   11122 23444   89999999886644 44455555442 11110000  0 


Q ss_pred             ----hhhhhhhH---------Hhhh--hhhhhccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           78 ----FFHSISLN---------MRMD--DYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        78 ----~~~~~~~~---------~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                          ..|.....         .+.+  ....++...++.    .+++-..+-+-+.-+.++..++...+.+.|++.|.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~----~a~l~~rgl~TL~lRm~~~~~nA~~vA~~L~~hp~V  311 (421)
T d2ctza1         237 EPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPF----EAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQV  311 (421)
T ss_dssp             SCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHH----HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             CCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHH----HHHHHhcCCcchhhHHHHHHHHHHHHHhhhccCCCe
Confidence                00000000         1111  111123222222    222222344556677788888999999999886543

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=0.00019  Score=59.94  Aligned_cols=109  Identities=14%  Similarity=0.105  Sum_probs=65.6

Q ss_pred             hHHHHHH----HcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC-CCceEEEEEecCCCccccccch
Q 047983            2 CIEETTK----KLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDLGV   76 (233)
Q Consensus         2 ~i~~l~~----~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~R~G~~~~~~~~~~~~~~~~   76 (233)
                      .|+++|+    ++|+++|+|..+..-..-    .|+ .++.+   |++.|++|.+++ ..+=.|.++..+. .+.     
T Consensus       159 ~ia~~a~~~~~~~g~~lvVDnT~atP~~~----~Pl-~~GAD---iVvhS~TKyi~GhsDv~~G~v~~~~~-~~~-----  224 (393)
T d1n8pa_         159 KVADLIKKHAAGQDVILVVDNTFLSPYIS----NPL-NFGAD---IVVHSATKYINGHSDVVLGVLATNNK-PLY-----  224 (393)
T ss_dssp             HHHHHHHHHTTTTTCEEEEECTTTHHHHC----CGG-GGTCS---EEEEETTTTTTCSSCCCCEEEEESCH-HHH-----
T ss_pred             hhhhhhhhhcccCCceEEEecCccCcccC----Cch-hhCCC---EEEEccccccCCCCccccceeeecch-hHH-----
Confidence            5677887    678999999999752211    122 23443   899999998844 6677787776652 222     


Q ss_pred             hhhhhhhhHHhhhhhhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047983           77 AFFHSISLNMRMDDYLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKE  137 (233)
Q Consensus        77 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  137 (233)
                               .+++.... ++....+.    .+++-...-+-+.-+.++..++...+.+.|+.
T Consensus       225 ---------~~l~~~~~~~G~~~~p~----~a~ll~rgl~Tl~lR~~~~~~nA~~lA~~L~~  273 (393)
T d1n8pa_         225 ---------ERLQFLQNAIGAIPSPF----DAWLTHRGLKTLHLRVRQAALSANKIAEFLAA  273 (393)
T ss_dssp             ---------HHHHHHHHHHCCCCCHH----HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ---------HHHHHHHhhcCCCCChH----HHHHHHhCCcchhhHHHHHHHHHHHHHHHHHh
Confidence                     33332222 33333333    12221233445666677778888888888865

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=97.77  E-value=0.00016  Score=58.86  Aligned_cols=48  Identities=21%  Similarity=0.007  Sum_probs=34.8

Q ss_pred             HHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 047983          178 TEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYY  227 (233)
Q Consensus       178 ~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~  227 (233)
                      .+.+...|.++||.+..|....  +-+|+|+..  +.|+++.+++-|+++.+
T Consensus       309 ~~~~~~~l~~~GI~~~~G~~~~--ggiRiS~~~~~t~e~V~~Li~~~~~~~~  358 (360)
T d1w23a_         309 NQQFLAKAKEQGFVGLNGHRSV--GGCRASIYNAVPIDACIALRELMIQFKE  358 (360)
T ss_dssp             HHHHHHHHHHTTEESCBCCTTT--CSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCeeeeCCCcc--CcEEEEeeCCCCHHHHHHHHHHHHHHHh
Confidence            4455567889999998875432  359999875  78888877777776654

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=0.001  Score=53.51  Aligned_cols=51  Identities=18%  Similarity=0.092  Sum_probs=38.7

Q ss_pred             hHHHHHHHHhccCEEEECCcccCCCCcEEEEeec--CHHHHHHHHHHHHHHHHHH
Q 047983          177 DTEFALKLAKEESIIVLPGITVGLKDWLRITFAV--EPSAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       177 ~~~~~~~ll~~~gi~v~pg~~f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~l~~~  229 (233)
                      +.+.+...|+++||.+..|..-  -+-+|+|+..  +.|+++.+++.|+++.+++
T Consensus       307 ~~~~~~~~l~~~Gi~~~~G~~~--~g~~Ris~~~~~t~edV~~li~~l~e~~~~~  359 (360)
T d1bjna_         307 LDKLFLEESFAAGLHALKGHRV--VGGMRASIYNAMPLEGVKALTDFMVEFERRH  359 (360)
T ss_dssp             GHHHHHHHHHHTTEECCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHCCCEeecCCCc--cCeEEEEecCCCCHHHHHHHHHHHHHHHHHc
Confidence            5566677788999999887421  1349999985  7899999999888876554

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.73  E-value=0.00019  Score=58.88  Aligned_cols=59  Identities=19%  Similarity=0.067  Sum_probs=35.6

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecC
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD   66 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~   66 (233)
                      ++|.++|+++|++||+|.+++....-...  .   .+..+..++-...+|.++..  .-|.+++.+
T Consensus       136 ~~i~~i~~~~~i~vIeD~a~a~g~~~~~~--~---~g~~g~~~~Sf~~~K~l~~g--~GG~i~t~~  194 (376)
T d1mdoa_         136 DAIYALGERYGIPVIEDAAHATGTSYKGR--H---IGARGTAIFSFHAIKNITCA--EGGIVVTDN  194 (376)
T ss_dssp             HHHHHHHHHHTCCBCEECTTCTTCEETTE--E---TTSSSEEEEECCTTSSSCSS--SCEEEEESC
T ss_pred             hHHHHHHHhcCceEEeccchhccCeeCCe--e---cccccCccccCCCcCCCCCC--CCCEEEEec
Confidence            36899999999999999999874322111  1   12223223334446865432  247777766

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=97.63  E-value=0.00078  Score=54.80  Aligned_cols=112  Identities=15%  Similarity=0.133  Sum_probs=66.5

Q ss_pred             hHHHHH-HHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCC-CCceEEEEEecCCCccccccchhhh
Q 047983            2 CIEETT-KKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDLGVAFF   79 (233)
Q Consensus         2 ~i~~l~-~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~R~G~~~~~~~~~~~~~~~~~~~   79 (233)
                      .+++++ +++++++|+|..+.....-.    |+ .++.+   |++.|+||.+++ ...=.|.+++++  ..      .  
T Consensus       104 ~~~~~~a~~~~~~~vVDnT~atp~~~~----pl-~~GaD---iVv~S~TKy~~Gh~d~~~G~v~~~~--~~------~--  165 (331)
T d1pffa_         104 DAVKQARKQKDILVIVDNTFASPILTN----PL-DLGVD---IVVHSATKYINGHTDVVAGLVCSRA--DI------I--  165 (331)
T ss_dssp             HHHHHHTTSSSCEEEEECTTTHHHHCC----GG-GGTCS---EEEEETTTTTSSSSSCCCEEEEECH--HH------H--
T ss_pred             hhhhhhhcccCceEEeecccccccccc----cc-ccCCC---EEEecchhhcCCCCccccccccccc--cc------h--
Confidence            466764 56899999999998533221    22 23333   899999998865 555556666654  11      1  


Q ss_pred             hhhhhHHhhhh--hhh-hccCcchHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047983           80 HSISLNMRMDD--YLL-LSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCI  141 (233)
Q Consensus        80 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  141 (233)
                            ...+.  ... .+....+.    .+++-...-+.+..+.++..+|...+.+.|++.|.+
T Consensus       166 ------~~~~~~~~~~~~G~~l~p~----~a~ll~rgl~Tl~~Rm~~~~~nA~~lA~~L~~hp~V  220 (331)
T d1pffa_         166 ------AKVKSQGIKDITGAIISPH----DAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAV  220 (331)
T ss_dssp             ------HHHHHTCCCCCCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             ------hhhhhhhhhhccCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcE
Confidence                  22211  112 12222222    222222345667777888889999999999886544

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=97.59  E-value=0.00044  Score=56.86  Aligned_cols=207  Identities=10%  Similarity=-0.036  Sum_probs=97.0

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhh
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFH   80 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~   80 (233)
                      ++|.++|++++++||+|-+++.........  ..  ...+-.++-...+|.....+  -|.+++.+. ++.+.+...+.+
T Consensus       137 ~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~--~G--~~g~~~~~Sf~~~K~l~~g~--GG~i~t~~~-~~~~~~~~~~~~  209 (371)
T d2fnua1         137 ESVQKLCKKHSLSFLSDSSHALGSEYQNKK--VG--GFALASVFSFHAIKPITTAE--GGAVVTNDS-ELHEKMKLFRSH  209 (371)
T ss_dssp             HHHHHHHHHHTCEEEEECTTCTTCEETTEE--TT--SSSSEEEEECCTTSSSCCSS--CEEEEESCH-HHHHHHHHHTBT
T ss_pred             ccccccccccchhhccchhhccCceecccc--CC--cccccccccccccccccccc--ceEEEeech-hhhhhccccccc
Confidence            368999999999999999998744322111  11  11122244444488754433  477777663 444321111000


Q ss_pred             hhhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCc---cEE-EEE
Q 047983           81 SISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEG---SMF-VMY  155 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---g~~-~~~  155 (233)
                      .... .....+.....+.+... ...|++...+ -+.+++..+.-+++.+...+.|.+.+.+..+.++.+   .++ .. 
T Consensus       210 g~~~-~~~~~~~~~~~G~n~r~sel~Aaigl~q-L~~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~-  286 (371)
T d2fnua1         210 GMLK-KDFFEGEVKSIGHNFRLNEIQSALGLSQ-LKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYP-  286 (371)
T ss_dssp             TEEE-SSSSCEEESSCCCBCCCCHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEE-
T ss_pred             cccc-ccccccccccccccccccchhhhhhhhh-hhhccchhhhhhhhhhhhccccccccccccccccccccccccccc-
Confidence            0000 00000000001111111 1122221111 112333334444555666777777655432111111   111 11 


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcc-------c----CC----------CCcEEEEeec--CH
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGIT-------V----GL----------KDWLRITFAV--EP  212 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~-------f----~~----------~~~~Rl~~~~--~~  212 (233)
                              +.++...    ....+.+.+.|+++||-+.+...       |    ..          ...+.+.+..  +.
T Consensus       287 --------i~~~~~~----~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~  354 (371)
T d2fnua1         287 --------ILMHQKF----FTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNL  354 (371)
T ss_dssp             --------EEECGGG----GGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCH
T ss_pred             --------ccccccc----hhHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCH
Confidence                    1122111    02456677778899999876422       1    00          1345555554  78


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 047983          213 SAFEIGLGRMKAFYYRH  229 (233)
Q Consensus       213 ~~l~~~~~~l~~~l~~~  229 (233)
                      ++++..++.+.++++.+
T Consensus       355 ~di~~I~~~i~~~~~~~  371 (371)
T d2fnua1         355 ESVQNIAHSVLKTFESF  371 (371)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            89999999998888753

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=97.45  E-value=0.00084  Score=55.54  Aligned_cols=206  Identities=10%  Similarity=0.032  Sum_probs=99.0

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccCCCCceEEEEEecCCCccccccchhhhhh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDLGVAFFHS   81 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~   81 (233)
                      +|.++|++++++||+|.+++....-...  .+...+  +-.++-.+.+|..+.  -.-|.++++++ ++.+.+...+.|.
T Consensus       140 ~i~~~~~~~~i~lieD~a~a~ga~~~g~--~~g~~g--~~~~~Sf~~~K~i~~--g~GG~i~t~~~-~~~~~~~~~~~~g  212 (384)
T d1b9ha_         140 ALAKISADTGVPLLQDAAHAHGARWQGK--RVGELD--SIATFSFQNGKLMTA--GEGGAVVFPDG-ETEKYETAFLRHS  212 (384)
T ss_dssp             HHHHHHHHHTCCBCEECTTCTTCEETTE--EGGGSS--SCEEEECCTTSSSCS--SSCEEEEECTT-CHHHHHHHHHHTB
T ss_pred             cchhhhhhhhhhhhhhhceecccccCCE--ecCccc--ccceecccccccccc--cccchhhhhhH-HHHHHHHHHHhcC
Confidence            6889999999999999999875432211  111111  223445556887532  23488888764 3432211110000


Q ss_pred             hhhHHhhhhhhhhccCcchHH-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC---C-c-cEEEEE
Q 047983           82 ISLNMRMDDYLLLSESVYTTV-GAVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKP---E-G-SMFVMY  155 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---~-~-g~~~~~  155 (233)
                      ......-..+.....+.+... ...|++...+ -+.+++..+.-+++.+++.+.|++++++.....+   . . .++.. 
T Consensus       213 ~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~q-L~~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~-  290 (384)
T d1b9ha_         213 CGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQ-LARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAM-  290 (384)
T ss_dssp             TTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEE-
T ss_pred             CCCccccccccccccccccccccchhhhhhhh-hhhcccchhhhhhhhhhhhhhhhccccccccccccccccccccccc-
Confidence            000000000000001111111 1112221111 1234444555566777788888776554311111   1 1 12222 


Q ss_pred             ecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcc----------cCC-------------------CCcEEE
Q 047983          156 CGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGIT----------VGL-------------------KDWLRI  206 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~----------f~~-------------------~~~~Rl  206 (233)
                              +.++..    ..+..+.+.+.|+++||-..+...          ++.                   +..++|
T Consensus       291 --------~~~~~~----~~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~L  358 (384)
T d1b9ha_         291 --------FRIPGL----TEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWL  358 (384)
T ss_dssp             --------EECTTC----CHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEE
T ss_pred             --------ceeccc----ccccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEc
Confidence                    223211    111345677778899998876421          000                   133666


Q ss_pred             Eeec--C-HHHHHHHHHHHHHHHHH
Q 047983          207 TFAV--E-PSAFEIGLGRMKAFYYR  228 (233)
Q Consensus       207 ~~~~--~-~~~l~~~~~~l~~~l~~  228 (233)
                      .+..  + +++++...+.|++++++
T Consensus       359 P~~~~Lt~e~ei~~I~~~i~~~l~~  383 (384)
T d1b9ha_         359 HHRVLLAGEPELHATAEIIADAVAR  383 (384)
T ss_dssp             EGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhh
Confidence            6554  4 56899999999988865

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.73  E-value=0.0079  Score=48.93  Aligned_cols=62  Identities=24%  Similarity=0.254  Sum_probs=37.8

Q ss_pred             ChHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccC--ccccCCCCceEEEEEecCCCccc
Q 047983            1 FCIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSI--SKRWIVPGWRLGWLVTSDPNGIL   71 (233)
Q Consensus         1 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~--sK~~~~~G~R~G~~~~~~~~~~~   71 (233)
                      ++|.++|+++|++||+|-+++....-...  .+...+  +  +.+.||  +|.++..|  -|.+++.+. ++.
T Consensus       128 ~~i~~~~~~~~i~vIED~a~a~g~~~~~~--~~G~~g--d--~~~fSf~~~K~l~tge--GG~i~tnn~-~~~  191 (374)
T d1o69a_         128 DEIVEICKENDIVLIEDAAEALGSFYKNK--ALGTFG--E--FGVYSYNGNKIITTSG--GGMLIGKNK-EKI  191 (374)
T ss_dssp             HHHHHHHHHTTCEEEEECTTCTTCEETTE--ETTSSS--S--EEEEECCTTSSSCCSS--CEEEEESCH-HHH
T ss_pred             HHHHHHhhccCcchhhhhhhhhcceECCe--ecCCCC--c--eEEEeccCcccccccc--ceeehhhhH-HHH
Confidence            37899999999999999999874332211  111111  2  444455  68765544  266777663 344

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=96.49  E-value=0.057  Score=45.05  Aligned_cols=95  Identities=15%  Similarity=0.026  Sum_probs=62.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCccEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEE
Q 047983          112 TEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESII  191 (233)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~  191 (233)
                      .+.+=+++..+....+.+++.+.|.+++++.. ..+ +.+|--         +.+.++.      +.+.+.+.|.++|+.
T Consensus       337 lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~-~~~-~~~f~e---------f~v~~~~------~~~~i~k~L~d~G~~  399 (437)
T d1wyua1         337 LGPEGLREVALKSVEMAHKLHALLLEVPGVRP-FTP-KPFFNE---------FALALPK------DPEAVRRALAERGFH  399 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEE-CSC-SSBCSE---------EEEECSS------CHHHHHHHHHHTTCC
T ss_pred             cCcccHHHHHHHHHHHHHHHHHHhhhcCCeec-cCC-CCeeeE---------EEEECCC------CHHHHHHHHHhCCCC
Confidence            35556888899999999999999998877653 222 333322         3333322      455555666677885


Q ss_pred             EECCcc---cCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 047983          192 VLPGIT---VGLKDWLRITFAV--EPSAFEIGLGRMKAF  225 (233)
Q Consensus       192 v~pg~~---f~~~~~~Rl~~~~--~~~~l~~~~~~l~~~  225 (233)
                      .  |..   +..++.+.++++.  +.++++..++.|+++
T Consensus       400 ~--~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~ei  436 (437)
T d1wyua1         400 G--ATPVPREYGENLALFAATELHEEEDLLALREALKEV  436 (437)
T ss_dssp             C--CEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             C--CcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence            2  221   1235788899984  688888888887765

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=95.50  E-value=0.11  Score=43.56  Aligned_cols=201  Identities=14%  Similarity=-0.008  Sum_probs=101.5

Q ss_pred             hHHHHHHHcCcEEEEccccCccccCCCccccccccCCccCEEEEccCccccC----CCCceEEEEEecCCCccccccchh
Q 047983            2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWI----VPGWRLGWLVTSDPNGILQDLGVA   77 (233)
Q Consensus         2 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~----~~G~R~G~~~~~~~~~~~~~~~~~   77 (233)
                      ++.+++++.+..+++|-+--.....-..   ......   .++....++.||    ..|--+|++++.+  .++++|.-.
T Consensus       223 ~~~~~~h~~g~~~~~~~~~~~~~~~l~~---p~~~g~---div~vg~~q~~G~P~~~GGP~~G~~a~~~--~~~R~~PGR  294 (471)
T d1wyub1         223 EISRLCKEAGVQLYYDGANLNAIMGWAR---PGDMGF---DVVHLNLHKTFTVPHGGGGPGSGPVGVKA--HLAPYLPVP  294 (471)
T ss_dssp             HHHHHHHHHTCEEEEEGGGGGGTTTTCC---HHHHTC---SEEECCTTTTTCCCCTTSCCCCCCEEECG--GGGGGCCSC
T ss_pred             hhHHHHHhccccccccccchhhhhhccc---cCcccc---cccccccccccccccccccccccceeehh--hhhccCCCc
Confidence            4677788888777766443332211111   111111   133344444432    2344478999987  566544321


Q ss_pred             hhhhh------hhHHhhhhhhhhccCcchHH-H-HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCc
Q 047983           78 FFHSI------SLNMRMDDYLLLSESVYTTV-G-AVPQILEKTEEEFFSKITDILREAADICCDRLKEIPCITCPKKPEG  149 (233)
Q Consensus        78 ~~~~~------~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  149 (233)
                       +...      .+..+=++........++.. + +.+.++.-.+.+=++++.+...++..++.+.|+.. ++..  ...+
T Consensus       295 -iV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~-G~~~--~~~~  370 (471)
T d1wyub1         295 -LVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRV--PYDG  370 (471)
T ss_dssp             -EEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBC--SSCS
T ss_pred             -eecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhhc-Ccee--ccCc
Confidence             0000      00001111111122222222 2 22223333466778899999999999999999763 5543  2333


Q ss_pred             cEEEEEecCCCcccccccccccCCCCChHHHHHHHHhccCEEEECCcccC--CCCcEEEEeec--CHHHHHHHHHHHHHH
Q 047983          150 SMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVLPGITVG--LKDWLRITFAV--EPSAFEIGLGRMKAF  225 (233)
Q Consensus       150 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--~~~~~Rl~~~~--~~~~l~~~~~~l~~~  225 (233)
                      .+|-=         +-+..+.  ++  +...+.+.|.+.|+.- |...|.  .++.+-+|.+.  +.++++...+.|+++
T Consensus       371 ~ff~E---------Fvv~~~~--~~--~~~~i~k~L~~~G~~~-~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i  436 (471)
T d1wyub1         371 PSMHE---------FVAQPPE--GF--RALDLAKGLLELGFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGAL  436 (471)
T ss_dssp             SCCSC---------EEEBCST--TC--CHHHHHHHHHHTTCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             ceeeE---------EeecCCC--CC--CHHHHHHHHHHcCCCC-CcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Confidence            22211         1122221  22  3343444445678853 333343  25678788874  788888888888887


Q ss_pred             HHH
Q 047983          226 YYR  228 (233)
Q Consensus       226 l~~  228 (233)
                      +++
T Consensus       437 ~~e  439 (471)
T d1wyub1         437 LKK  439 (471)
T ss_dssp             HTS
T ss_pred             HHh
Confidence            764