Citrus Sinensis ID: 047991

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
MSIEYYQFGPHKIDAKDVFYTTPLSFVMVNLRPREVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPRKESDFENNDEIYDALDVKEKELKKKLDLDEERKDRSPEERIQEANEYRSLFL
cccEEEEEcccEEccccEEEccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcc
cccccEEEccEEEcccEEEEEcccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccEEEEEEEEccccccccccHHHHHHHHHcHHHHccccccHccccccHHHHHHHHHHHHHHcc
msieyyqfgphkidakdvfyttpLSFVMVNLRPREVKRFADLTADEICDLWLTARKVGRQLEVYHKASsltlniqdgpqagqsvphvhihivprkesdfenndEIYDALDVKEKELKKKLdldeerkdrspeeRIQEANEYRSLFL
msieyyqfgphkidakdvFYTTPLSFVMVNLRPREVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIvprkesdfennDEIYDAldvkekelkkkldldeerkdrspeeriqeaneyrslfl
MSIEYYQFGPHKIDAKDVFYTTPLSFVMVNLRPREVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPRKESDFENNDEIYDAldvkekelkkkldldeerkdRSPEERIQEANEYRSLFL
***EYYQFGPHKIDAKDVFYTTPLSFVMVNLRPREVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQ********VPHVHIHIV******************************************************
*SIEYYQFGPHKIDAKDVFYTTPLSFVMVNLRPREVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPRKESDFENNDEIYDALDVKEKELK***************ERIQEANEYRSLFL
MSIEYYQFGPHKIDAKDVFYTTPLSFVMVNLRPREVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPRKESDFENNDEIYDALDVKEKELKKKLD*************IQEANEYRSLFL
***EYYQFGPHKIDAKDVFYTTPLSFVMVNLRPREVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPRKESDFENNDEIYDALDVKEKE***********KD*S**ERI*****YR**FL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSIEYYQFGPHKIDAKDVFYTTPLSFVMVNLRPREVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPRKESDFENNDEIxxxxxxxxxxxxxxxxxxxxxKDRSPEERIQEANEYRSLFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query146 2.2.26 [Sep-21-2011]
Q86KK2149 Bis(5'-adenosyl)-triphosp yes no 0.890 0.872 0.423 2e-27
O76463440 Nitrilase and fragile his yes no 0.890 0.295 0.446 2e-25
Q1KZG4149 Bis(5'-adenosyl)-triphosp yes no 0.753 0.738 0.446 8e-25
P49789147 Bis(5'-adenosyl)-triphosp yes no 0.753 0.748 0.446 1e-23
Q9JIX3150 Bis(5'-adenosyl)-triphosp yes no 0.753 0.733 0.438 1e-23
O89106150 Bis(5'-adenosyl)-triphosp yes no 0.753 0.733 0.429 5e-23
P49776182 Bis(5'-nucleosyl)-tetraph yes no 0.897 0.719 0.368 4e-21
O76464460 Nitrilase and fragile his yes no 0.876 0.278 0.369 8e-21
P49775206 Bis(5'-adenosyl)-triphosp yes no 0.630 0.446 0.390 8e-13
C8Z5L6206 Bis(5'-adenosyl)-triphosp N/A no 0.630 0.446 0.390 8e-13
>sp|Q86KK2|FHIT_DICDI Bis(5'-adenosyl)-triphosphatase OS=Dictyostelium discoideum GN=fhit PE=3 SV=1 Back     alignment and function desciption
 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 93/156 (59%), Gaps = 26/156 (16%)

Query: 1   MSIEYYQFGPHKIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICD 49
           M+  Y  FGP  I   ++F+TT LSF +VNL+P           R V R  DLT +E  D
Sbjct: 1   MTTTY--FGPWLIRQSEIFFTTELSFALVNLKPVLPGHVLVCPKRIVPRVKDLTKEEFTD 58

Query: 50  LWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPRKESDFENNDEIYDAL 109
           LWL+A+++   +E +     +T  IQDG  AGQ+V HVHIHI+PRK+ DFENND+IY+  
Sbjct: 59  LWLSAQRISSVVEEHFNGDGITFAIQDGKNAGQTVEHVHIHIIPRKKFDFENNDQIYN-- 116

Query: 110 DVKEKELKKKLDLDEERKDRSPEERIQEANEYRSLF 145
                      ++++ER+ RS EE  +E++E R LF
Sbjct: 117 -----------EIEKEREPRSYEEMEKESSELRPLF 141
Cleaves A-5'-PPP-5'A to yield AMP and ADP.
Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 2EC: 9
>sp|O76463|NFT1_CAEEL Nitrilase and fragile histidine triad fusion protein NitFhit OS=Caenorhabditis elegans GN=nft-1 PE=1 SV=1 Back     alignment and function description
>sp|Q1KZG4|FHIT_BOVIN Bis(5'-adenosyl)-triphosphatase OS=Bos taurus GN=FHIT PE=2 SV=1 Back     alignment and function description
>sp|P49789|FHIT_HUMAN Bis(5'-adenosyl)-triphosphatase OS=Homo sapiens GN=FHIT PE=1 SV=3 Back     alignment and function description
>sp|Q9JIX3|FHIT_RAT Bis(5'-adenosyl)-triphosphatase OS=Rattus norvegicus GN=Fhit PE=1 SV=1 Back     alignment and function description
>sp|O89106|FHIT_MOUSE Bis(5'-adenosyl)-triphosphatase OS=Mus musculus GN=Fhit PE=2 SV=3 Back     alignment and function description
>sp|P49776|APH1_SCHPO Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=aph1 PE=1 SV=2 Back     alignment and function description
>sp|O76464|NFT1_DROME Nitrilase and fragile histidine triad fusion protein NitFhit OS=Drosophila melanogaster GN=NitFhit PE=1 SV=1 Back     alignment and function description
>sp|P49775|HNT2_YEAST Bis(5'-adenosyl)-triphosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HNT2 PE=1 SV=2 Back     alignment and function description
>sp|C8Z5L6|HNT2_YEAS8 Bis(5'-adenosyl)-triphosphatase OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=HNT2 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query146
359478482189 PREDICTED: bis(5'-adenosyl)-triphosphata 0.993 0.767 0.711 1e-57
351726772157 uncharacterized protein LOC100305764 [Gl 1.0 0.929 0.707 2e-56
218185134152 hypothetical protein OsI_34902 [Oryza sa 0.958 0.921 0.707 2e-55
255570867153 histidine triad (hit) protein, putative 1.0 0.954 0.699 2e-55
297745729211 unnamed protein product [Vitis vinifera] 0.993 0.687 0.623 2e-55
194703202201 unknown [Zea mays] gi|413942118|gb|AFW74 0.958 0.696 0.701 3e-55
357155456162 PREDICTED: bis(5'-adenosyl)-triphosphata 0.972 0.876 0.686 5e-55
224146587209 predicted protein [Populus trichocarpa] 0.993 0.693 0.685 9e-55
224124872163 predicted protein [Populus trichocarpa] 0.993 0.889 0.660 1e-54
27542770156 ATPase-like protein [Sorghum bicolor] 0.958 0.897 0.688 1e-54
>gi|359478482|ref|XP_002275721.2| PREDICTED: bis(5'-adenosyl)-triphosphatase-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 111/156 (71%), Positives = 128/156 (82%), Gaps = 11/156 (7%)

Query: 1   MSIEYYQFGPHKIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICD 49
           M++++Y FGPHKI +K+VFY+T LSF MVNLRP           REVKRFADLTADEI D
Sbjct: 33  MALDHYTFGPHKIRSKEVFYSTHLSFAMVNLRPVLPAHVLICPRREVKRFADLTADEISD 92

Query: 50  LWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPRKESDFENNDEIYDAL 109
           LWLTA+KVG +LE +HKASS+T  IQDGPQAGQ+VPHVHIHI+PRK  DFE NDEIYDA+
Sbjct: 93  LWLTAQKVGSRLECHHKASSVTFTIQDGPQAGQTVPHVHIHILPRKVGDFEKNDEIYDAI 152

Query: 110 DVKEKELKKKLDLDEERKDRSPEERIQEANEYRSLF 145
           D  EKELKKKLDLDEERKDR+PEE  QEA+EY+ LF
Sbjct: 153 DENEKELKKKLDLDEERKDRNPEEMAQEADEYKVLF 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|351726772|ref|NP_001236370.1| uncharacterized protein LOC100305764 [Glycine max] gi|255626549|gb|ACU13619.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|218185134|gb|EEC67561.1| hypothetical protein OsI_34902 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|255570867|ref|XP_002526385.1| histidine triad (hit) protein, putative [Ricinus communis] gi|223534247|gb|EEF35961.1| histidine triad (hit) protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297745729|emb|CBI15785.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|194703202|gb|ACF85685.1| unknown [Zea mays] gi|413942118|gb|AFW74767.1| hypothetical protein ZEAMMB73_069795 [Zea mays] Back     alignment and taxonomy information
>gi|357155456|ref|XP_003577126.1| PREDICTED: bis(5'-adenosyl)-triphosphatase-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|224146587|ref|XP_002326061.1| predicted protein [Populus trichocarpa] gi|222862936|gb|EEF00443.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224124872|ref|XP_002319443.1| predicted protein [Populus trichocarpa] gi|222857819|gb|EEE95366.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|27542770|gb|AAO16703.1| ATPase-like protein [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query146
TAIR|locus:2161313180 FHIT "FRAGILE HISTIDINE TRIAD" 0.958 0.777 0.582 2.3e-39
ZFIN|ZDB-GENE-040426-1703150 fhit "fragile histidine triad 0.924 0.9 0.430 2.2e-25
ASPGD|ASPL0000005135176 AN6189 [Emericella nidulans (t 0.678 0.562 0.531 1.1e-23
DICTYBASE|DDB_G0274257149 fhit "bis(5'-adenosyl)-triphos 0.684 0.671 0.477 1e-22
UNIPROTKB|Q1KZG4149 FHIT "Bis(5'-adenosyl)-triphos 0.705 0.691 0.456 2.1e-22
RGD|620448150 Fhit "fragile histidine triad" 0.698 0.68 0.451 7e-22
UNIPROTKB|F1LRT5150 Fhit "Bis(5'-adenosyl)-triphos 0.698 0.68 0.451 7e-22
UNIPROTKB|P49789147 FHIT "Bis(5'-adenosyl)-triphos 0.698 0.693 0.451 1.1e-21
MGI|MGI:1277947150 Fhit "fragile histidine triad 0.698 0.68 0.442 1.9e-21
UNIPROTKB|F1NA30147 FHIT "Uncharacterized protein" 0.684 0.680 0.450 4.9e-21
TAIR|locus:2161313 FHIT "FRAGILE HISTIDINE TRIAD" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 88/151 (58%), Positives = 100/151 (66%)

Query:     6 YQFGPHKIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTA 54
             Y FGP+KID ++VFY TPLS+ MVNLRP           R V RF DLTADE  DLWLTA
Sbjct:    28 YAFGPYKIDPREVFYATPLSYAMVNLRPLLPAHVLVCPRRLVPRFTDLTADETSDLWLTA 87

Query:    55 RKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPRKESDFENNDEIYDAXXXXXX 114
             +KVG +LE +H ASSLTL IQDGPQAGQ+VPHVHIHI+PRK  DFE NDEIYDA      
Sbjct:    88 QKVGSKLETFHNASSLTLAIQDGPQAGQTVPHVHIHILPRKGGDFEKNDEIYDALDEKEK 147

Query:   115 XXXXXXXXXXXXXXRSPEERIQEANEYRSLF 145
                           RS +E   EA++YRSLF
Sbjct:   148 ELKQKLDLDKDRVDRSIQEMADEASQYRSLF 178
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0009117 "nucleotide metabolic process" evidence=ISS
GO:0047710 "bis(5'-adenosyl)-triphosphatase activity" evidence=ISS
GO:0043530 "adenosine 5'-monophosphoramidase activity" evidence=IDA
GO:0047627 "adenylylsulfatase activity" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
ZFIN|ZDB-GENE-040426-1703 fhit "fragile histidine triad gene" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ASPGD|ASPL0000005135 AN6189 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0274257 fhit "bis(5'-adenosyl)-triphosphatase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q1KZG4 FHIT "Bis(5'-adenosyl)-triphosphatase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|620448 Fhit "fragile histidine triad" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LRT5 Fhit "Bis(5'-adenosyl)-triphosphatase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P49789 FHIT "Bis(5'-adenosyl)-triphosphatase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1277947 Fhit "fragile histidine triad gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NA30 FHIT "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q86KK2FHIT_DICDI3, ., 6, ., 1, ., 2, 90.42300.89040.8724yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query146
cd01275126 cd01275, FHIT, FHIT (fragile histidine family): FH 3e-36
pfam0123097 pfam01230, HIT, HIT domain 5e-18
cd0046886 cd00468, HIT_like, HIT family: HIT (Histidine tria 4e-17
COG0537138 COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hy 3e-15
cd01277103 cd01277, HINT_subgroup, HINT (histidine triad nucl 6e-11
cd01276104 cd01276, PKCI_related, Protein Kinase C Interactin 7e-06
>gnl|CDD|238606 cd01275, FHIT, FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases Back     alignment and domain information 
 Score =  120 bits (304), Expect = 3e-36
 Identities = 44/123 (35%), Positives = 56/123 (45%), Gaps = 15/123 (12%)

Query: 8   FGPHKIDAKD---VFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLT 53
           F    I   +   VFY T  SF +VNL P           R V R  DLT +EI DL+  
Sbjct: 3   FCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKL 62

Query: 54  ARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPRKESDFENND-EIYDALDVK 112
            +   + L+V +K     + I DG   G  VPHVHIHIVPR   D       IY  +  +
Sbjct: 63  VQLAMKALKVVYKPDGFNIGINDGKAGGGIVPHVHIHIVPRWNGDTNFMPVIIYTKVLPE 122

Query: 113 EKE 115
           + E
Sbjct: 123 DLE 125

Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours. Length = 126
>gnl|CDD|216377 pfam01230, HIT, HIT domain Back     alignment and domain information
>gnl|CDD|238263 cd00468, HIT_like, HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides Back     alignment and domain information
>gnl|CDD|223611 COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only] Back     alignment and domain information
>gnl|CDD|238608 cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides Back     alignment and domain information
>gnl|CDD|238607 cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 146
KOG3379150 consensus Diadenosine polyphosphate hydrolase and 100.0
COG0537138 Hit Diadenosine tetraphosphate (Ap4A) hydrolase an 99.96
cd01275126 FHIT FHIT (fragile histidine family): FHIT protein 99.92
PRK10687119 purine nucleoside phosphoramidase; Provisional 99.91
PF0123098 HIT: HIT domain; InterPro: IPR001310 The Histidine 99.9
cd01277103 HINT_subgroup HINT (histidine triad nucleotide-bin 99.9
cd01276104 PKCI_related Protein Kinase C Interacting protein 99.86
cd0046886 HIT_like HIT family: HIT (Histidine triad) protein 99.84
KOG3275127 consensus Zinc-binding protein of the histidine tr 99.83
cd01278104 aprataxin_related aprataxin related: Aprataxin, a 99.77
cd00608329 GalT Galactose-1-phosphate uridyl transferase (Gal 99.77
TIGR00209347 galT_1 galactose-1-phosphate uridylyltransferase, 99.76
PRK11720346 galactose-1-phosphate uridylyltransferase; Provisi 99.75
PLN02643336 ADP-glucose phosphorylase 99.67
PF11969116 DcpS_C: Scavenger mRNA decapping enzyme C-term bin 99.11
PF02744166 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transf 99.09
COG1085338 GalT Galactose-1-phosphate uridylyltransferase [En 98.96
KOG2958354 consensus Galactose-1-phosphate uridylyltransferas 98.73
KOG4359166 consensus Protein kinase C inhibitor-like protein 98.5
PF04677121 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; In 97.51
cd00608 329 GalT Galactose-1-phosphate uridyl transferase (Gal 97.14
COG1085 338 GalT Galactose-1-phosphate uridylyltransferase [En 97.05
PRK11720 346 galactose-1-phosphate uridylyltransferase; Provisi 96.36
KOG3969310 consensus Uncharacterized conserved protein [Funct 96.21
PF01087183 GalP_UDP_transf: Galactose-1-phosphate uridyl tran 95.98
TIGR00209 347 galT_1 galactose-1-phosphate uridylyltransferase, 95.84
PLN02643 336 ADP-glucose phosphorylase 94.51
COG5075305 Uncharacterized conserved protein [Function unknow 92.26
KOG0562184 consensus Predicted hydrolase (HIT family) [Genera 89.45
PF01076196 Mob_Pre: Plasmid recombination enzyme; InterPro: I 87.95
PLN03103 403 GDP-L-galactose-hexose-1-phosphate guanyltransfera 84.29
PRK05471252 CDP-diacylglycerol pyrophosphatase; Provisional 80.35
KOG2476528 consensus Uncharacterized conserved protein [Funct 80.22
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-34  Score=206.32  Aligned_cols=136  Identities=53%  Similarity=0.773  Sum_probs=127.6

Q ss_pred             CccceecccccCCccEEEECCcEEEEEeCCC-----------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCCceE
Q 047991            3 IEYYQFGPHKIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLT   71 (146)
Q Consensus         3 ~~~~~f~~~~ip~~~vv~e~d~~~af~di~P-----------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~~n   71 (146)
                      +..+.||++.||+..|+|++++.+||.++.|           |-++.|.||+.+|.++|+..+++|.+.|++.++...+|
T Consensus         4 ~~~~~F~~~~i~~~~VFykT~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~t   83 (150)
T KOG3379|consen    4 TKSLYFGKFLIPPDHVFYKTKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLT   83 (150)
T ss_pred             CcccccccccCCcceEEEeccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceE
Confidence            4678999999999999999999999999887           66799999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCccCeEEEEEeccCCCCCCCChhhhhhhHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHhhc
Q 047991           72 LNIQDGPQAGQSVPHVHIHIVPRKESDFENNDEIYDALDVKEKELKKKLDLDEERKDRSPEERIQEANEYRSLF  145 (146)
Q Consensus        72 i~~n~g~~~gq~v~H~HiHIIPR~~~d~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (146)
                      +.+.+|+.+||+|||+|+||+||+.+|...|+.+|+.|+...       ++..+|++|+.|||++||.+||.+|
T Consensus        84 i~iQDG~~AGQTVpHvHvHIlPR~~gDf~~Nd~IY~~L~~~~-------~e~~~r~~Rs~eEM~eEA~~lr~~~  150 (150)
T KOG3379|consen   84 IAIQDGPEAGQTVPHVHVHILPRKAGDFGDNDLIYDELDKHE-------KELEDRKPRSLEEMAEEAQRLREYF  150 (150)
T ss_pred             EEeccccccCcccceeEEEEccccccccccchHHHHHHHhcc-------cccccCCcchHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999998664       3447899999999999999999875

>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only] Back     alignment and domain information
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases Back     alignment and domain information
>PRK10687 purine nucleoside phosphoramidase; Provisional Back     alignment and domain information
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms [] Back     alignment and domain information
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides Back     alignment and domain information
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides Back     alignment and domain information
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides Back     alignment and domain information
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms] Back     alignment and domain information
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome Back     alignment and domain information
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate Back     alignment and domain information
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1 Back     alignment and domain information
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional Back     alignment and domain information
>PLN02643 ADP-glucose phosphorylase Back     alignment and domain information
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B Back     alignment and domain information
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism Back     alignment and domain information
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion] Back     alignment and domain information
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion] Back     alignment and domain information
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only] Back     alignment and domain information
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues Back     alignment and domain information
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate Back     alignment and domain information
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion] Back     alignment and domain information
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional Back     alignment and domain information
>KOG3969 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism Back     alignment and domain information
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1 Back     alignment and domain information
>PLN02643 ADP-glucose phosphorylase Back     alignment and domain information
>COG5075 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only] Back     alignment and domain information
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA Back     alignment and domain information
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional Back     alignment and domain information
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional Back     alignment and domain information
>KOG2476 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query146
1fhi_A147 Substrate Analog (Ib2) Complex With The Fragile His 1e-23
3fit_A147 Fhit (Fragile Histidine Triad Protein) In Complex W 3e-23
2fhi_A147 Substrate Analog (Ib2) Complex With The His 96 Asn 9e-23
1ems_A440 Crystal Structure Of The C. Elegans Nitfhit Protein 3e-22
3l7x_A173 The Crystal Structure Of Smu.412c From Streptococcu 2e-04
>pdb|1FHI|A Chain A, Substrate Analog (Ib2) Complex With The Fragile Histidine Triad Protein, Fhit Length = 147 Back     alignment and structure 
Iteration: 1

 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 71/113 (62%), Gaps = 11/113 (9%)
Query: 6   YQFGPHKIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTA 54
           ++FG H I    VF  T LSF +VN +P           R V+RF DL  DE+ DL+ T 
Sbjct: 3   FRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTT 62
Query: 55  RKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPRKESDFENNDEIYD 107
           ++VG  +E +   +SLT ++QDGP+AGQ+V HVH+H++PRK  DF  ND IY+
Sbjct: 63  QRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYE 115
>pdb|3FIT|A Chain A, Fhit (Fragile Histidine Triad Protein) In Complex With AdenosineSULFATE AMP ANALOG Length = 147 Back     alignment and structure
>pdb|2FHI|A Chain A, Substrate Analog (Ib2) Complex With The His 96 Asn Substitution Of The Fragile Histidine Triad Protein, Fhit Length = 147 Back     alignment and structure
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein Length = 440 Back     alignment and structure
>pdb|3L7X|A Chain A, The Crystal Structure Of Smu.412c From Streptococcus Mutans Ua159 Length = 173 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query146
1fit_A147 FragIle histidine protein; FHIT, fragIle histidine 4e-50
1ems_A440 Nitfhit, NIT-fragIle histidine triad fusion protei 4e-47
3ano_A218 AP-4-A phosphorylase; diadenosine polyphosphate, H 4e-21
2oik_A154 Histidine triad (HIT) protein; HIT-like fold, stru 6e-15
2eo4_A149 150AA long hypothetical histidine triad nucleotid 7e-14
3l7x_A173 SMU.412C, putative HIT-like protein involved in ce 8e-14
3i4s_A149 Histidine triad protein; hydrolase, phosphatase, H 3e-12
3imi_A147 HIT family protein; structural genomics, infectiou 7e-12
3p0t_A138 Uncharacterized protein; ssgcid, HIT-like protein, 2e-11
1y23_A145 HIT, histidine triad protein; HIT protein, PKCI-1, 5e-11
3lb5_A161 HIT-like protein involved in cell-cycle regulatio; 2e-10
3r6f_A135 HIT family protein; structural genomics, seattle s 2e-10
3nrd_A135 Histidine triad (HIT) protein; structural genomics 1e-09
3o0m_A149 HIT family protein; ssgcid, NIH, niaid, SBRI, UW, 8e-09
3i24_A149 HIT family hydrolase; structural genomics, PSI-2, 2e-08
3ksv_A149 Uncharacterized protein; HIT family, structural ge 8e-08
3ohe_A137 Histidine triad (HIT) protein; structural genomics 1e-07
4egu_A119 Histidine triad (HIT) protein; structural genomics 7e-06
3n1s_A119 HIT-like protein HINT; histidine triad nucleotide 8e-06
1xqu_A147 HIT family hydrolase; protein STRU initiative, PSI 9e-06
3o1c_A126 Histidine triad nucleotide-binding protein 1; hydr 1e-04
3oj7_A117 Putative histidine triad family protein; hydrolase 1e-04
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A* Length = 147 Back     alignment and structure
 Score =  156 bits (396), Expect = 4e-50
 Identities = 63/151 (41%), Positives = 84/151 (55%), Gaps = 18/151 (11%)

Query: 6   YQFGPHKIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTA 54
           ++FG H I    VF  T LSF +VN +P           R V+RF DL  DE+ DL+ T 
Sbjct: 3   FRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTT 62

Query: 55  RKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPRKESDFENNDEIYDALDVKEK 114
           ++VG  +E +   +SLT ++QDGP+AGQ+V HVH+H++PRK  DF  ND IY+ L   +K
Sbjct: 63  QRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHDK 122

Query: 115 ELKKKLDLDEERKDRSPEERIQEANEYRSLF 145
           E       D     RS EE   EA   R  F
Sbjct: 123 E-------DFPASWRSEEEMAAEAAALRVYF 146
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Length = 440 Back     alignment and structure
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis} Length = 218 Back     alignment and structure
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1 Length = 154 Back     alignment and structure
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii} Length = 149 Back     alignment and structure
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans} Length = 173 Back     alignment and structure
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum} Length = 149 Back     alignment and structure
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} Length = 147 Back     alignment and structure
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp} Length = 138 Back     alignment and structure
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1 Length = 145 Back     alignment and structure
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae} Length = 161 Back     alignment and structure
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi} Length = 135 Back     alignment and structure
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti} Length = 135 Back     alignment and structure
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str} Length = 149 Back     alignment and structure
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114} Length = 149 Back     alignment and structure
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} Length = 149 Back     alignment and structure
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei} Length = 137 Back     alignment and structure
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile} Length = 119 Back     alignment and structure
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} PDB: 3n1t_A* Length = 119 Back     alignment and structure
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1 Length = 147 Back     alignment and structure
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A Length = 126 Back     alignment and structure
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} PDB: 3omf_A* 3oxk_A* Length = 117 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query146
1fit_A147 FragIle histidine protein; FHIT, fragIle histidine 100.0
3imi_A147 HIT family protein; structural genomics, infectiou 99.96
3lb5_A161 HIT-like protein involved in cell-cycle regulatio; 99.96
3o0m_A149 HIT family protein; ssgcid, NIH, niaid, SBRI, UW, 99.96
3ksv_A149 Uncharacterized protein; HIT family, structural ge 99.96
3l7x_A173 SMU.412C, putative HIT-like protein involved in ce 99.96
1ems_A440 Nitfhit, NIT-fragIle histidine triad fusion protei 99.95
1y23_A145 HIT, histidine triad protein; HIT protein, PKCI-1, 99.95
2eo4_A149 150AA long hypothetical histidine triad nucleotid 99.95
3r6f_A135 HIT family protein; structural genomics, seattle s 99.94
3p0t_A138 Uncharacterized protein; ssgcid, HIT-like protein, 99.93
2oik_A154 Histidine triad (HIT) protein; HIT-like fold, stru 99.93
3ano_A218 AP-4-A phosphorylase; diadenosine polyphosphate, H 99.92
3n1s_A119 HIT-like protein HINT; histidine triad nucleotide 99.91
4egu_A119 Histidine triad (HIT) protein; structural genomics 99.91
3oj7_A117 Putative histidine triad family protein; hydrolase 99.9
3ohe_A137 Histidine triad (HIT) protein; structural genomics 99.9
3nrd_A135 Histidine triad (HIT) protein; structural genomics 99.9
3i24_A149 HIT family hydrolase; structural genomics, PSI-2, 99.9
3o1c_A126 Histidine triad nucleotide-binding protein 1; hydr 99.89
1xqu_A147 HIT family hydrolase; protein STRU initiative, PSI 99.87
3i4s_A149 Histidine triad protein; hydrolase, phosphatase, H 99.86
1z84_A351 Galactose-1-phosphate uridyl transferase-like prot 99.8
1gup_A348 Galactose-1-phosphate uridylyltransferase; nucleot 99.8
3sp4_A204 Aprataxin-like protein; HIT domain, zinc finger, D 98.74
1z84_A 351 Galactose-1-phosphate uridyl transferase-like prot 98.17
3bl9_A301 Scavenger mRNA-decapping enzyme DCPS; ligand compl 98.06
1vlr_A350 MRNA decapping enzyme; 16740816, structural genomi 98.02
1gup_A 348 Galactose-1-phosphate uridylyltransferase; nucleot 96.25
3vg8_G116 Hypothetical protein TTHB210; alpha and beta prote 89.69
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A* Back     alignment and structure
Probab=100.00  E-value=2.2e-33  Score=204.42  Aligned_cols=134  Identities=46%  Similarity=0.750  Sum_probs=109.9

Q ss_pred             cceecccccCCccEEEECCcEEEEEeCCC-----------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCCceEEE
Q 047991            5 YYQFGPHKIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLN   73 (146)
Q Consensus         5 ~~~f~~~~ip~~~vv~e~d~~~af~di~P-----------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~   73 (146)
                      .+.||++.||++++||||++++||+|++|           +|+.++.+|+++++.+|+.+++++++++++.+++++||++
T Consensus         2 ~~~f~~~~ip~~~iv~e~~~~~a~~d~~p~~pgh~LViPk~h~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~   81 (147)
T 1fit_A            2 SFRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFS   81 (147)
T ss_dssp             CEEETTEEECGGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             ceEecCcccCCcEEEEECCCEEEEECCCCCCCcEEEEEEccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            47899999999999999999999999988           8999999999999999999999999999999999999999


Q ss_pred             EecCCCCCCccCeEEEEEeccCCCCCCCChhhhhhhHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHhhc
Q 047991           74 IQDGPQAGQSVPHVHIHIVPRKESDFENNDEIYDALDVKEKELKKKLDLDEERKDRSPEERIQEANEYRSLF  145 (146)
Q Consensus        74 ~n~g~~~gq~v~H~HiHIIPR~~~d~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (146)
                      +|+|+.+||+|+|+|+|||||+.+|..+++..|..+.....       .+..+..+++|||+++|++||+.|
T Consensus        82 ~n~g~~agq~v~HlH~HiiPr~~~d~~~~~~v~~~~~~~~~-------~~~~~~~~~~~e~~~~a~~lr~~l  146 (147)
T 1fit_A           82 MQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHDK-------EDFPASWRSEEEMAAEAAALRVYF  146 (147)
T ss_dssp             ECCSGGGTCCSSSCCEEEEEECTTC---------------------------CCCCCHHHHHHHHHHHHHTT
T ss_pred             EecCCccCCCccEEEEEEECCcCCCCCCcchHHHHhhhccc-------ccccccCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999888888887652210       034567789999999999999987
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1 Back     alignment and structure
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae} Back     alignment and structure
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str} Back     alignment and structure
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0 Back     alignment and structure
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans} Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Back     alignment and structure
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1 Back     alignment and structure
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi} Back     alignment and structure
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp} Back     alignment and structure
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1 Back     alignment and structure
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis} Back     alignment and structure
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A* Back     alignment and structure
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile} Back     alignment and structure
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A* Back     alignment and structure
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei} Back     alignment and structure
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti} Back     alignment and structure
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114} Back     alignment and structure
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A Back     alignment and structure
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1 Back     alignment and structure
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum} Back     alignment and structure
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A* Back     alignment and structure
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A* Back     alignment and structure
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A* Back     alignment and structure
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A* Back     alignment and structure
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A* Back     alignment and structure
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B* Back     alignment and structure
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A* Back     alignment and structure
>3vg8_G Hypothetical protein TTHB210; alpha and beta proteins (A+B), unknown function; 2.20A {Thermus thermophilus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 146
d1fita_146 d.13.1.1 (A:) FHIT (fragile histidine triad protei 5e-30
d1emsa1160 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-te 8e-22
d1kpfa_111 d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 4e-09
d1xqua_113 d.13.1.1 (A:) Putative hydrolase {Clostridium ther 7e-07
d2oika1139 d.13.1.1 (A:6-144) Histidine triad protein Mfla250 1e-06
d1y23a_139 d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423] 1e-05
d1z84a1173 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyl 0.001
d1guqa2171 d.13.1.2 (A:178-348) Galactose-1-phosphate uridyly 0.002
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: FHIT (fragile histidine triad protein)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 5e-30
 Identities = 63/151 (41%), Positives = 84/151 (55%), Gaps = 18/151 (11%)

Query: 6   YQFGPHKIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTA 54
           ++FG H I    VF  T LSF +VN +P           R V+RF DL  DE+ DL+ T 
Sbjct: 2   FRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTT 61

Query: 55  RKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPRKESDFENNDEIYDALDVKEK 114
           ++VG  +E +   +SLT ++QDGP+AGQ+V HVH+H++PRK  DF  ND IY+ L   +K
Sbjct: 62  QRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHDK 121

Query: 115 ELKKKLDLDEERKDRSPEERIQEANEYRSLF 145
           E       D     RS EE   EA   R  F
Sbjct: 122 E-------DFPASWRSEEEMAAEAAALRVYF 145
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 160 Back     information, alignment and structure
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]} Length = 113 Back     information, alignment and structure
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]} Length = 139 Back     information, alignment and structure
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]} Length = 139 Back     information, alignment and structure
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 173 Back     information, alignment and structure
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Length = 171 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query146
d1fita_146 FHIT (fragile histidine triad protein) {Human (Hom 100.0
d1emsa1160 NIT-FHIT fusion protein, C-terminal domain {Nemato 100.0
d1y23a_139 Hit {Bacillus subtilis [TaxId: 1423]} 99.96
d2oika1139 Histidine triad protein Mfla2506 {Methylobacillus 99.93
d1kpfa_111 Protein kinase C inhibitor-1, PKCI-1 {Human (Homo 99.89
d1xqua_113 Putative hydrolase {Clostridium thermocellum [TaxI 99.89
d1z84a2156 Galactose-1-phosphate uridylyltransferase {Thale c 99.83
d1guqa2171 Galactose-1-phosphate uridylyltransferase {Escheri 99.79
d1vlra1192 mRNA decapping enzyme DcpS C-terminal domain {Mous 98.58
d1z84a1173 Galactose-1-phosphate uridylyltransferase {Thale c 97.68
d1guqa1176 Galactose-1-phosphate uridylyltransferase {Escheri 97.17
d2pofa1220 CDP-diacylglycerol pyrophosphatase CDH {Escherichi 84.55
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: FHIT (fragile histidine triad protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-35  Score=211.09  Aligned_cols=135  Identities=45%  Similarity=0.734  Sum_probs=110.6

Q ss_pred             cceecccccCCccEEEECCcEEEEEeCCC-----------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCCceEEE
Q 047991            5 YYQFGPHKIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLN   73 (146)
Q Consensus         5 ~~~f~~~~ip~~~vv~e~d~~~af~di~P-----------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~   73 (146)
                      +++||+..|+|+.|||||++++||+|++|           +|++++.+|+++++.+|+.+++++.+++++.+++++||++
T Consensus         1 ~~~f~~~~i~p~~ii~e~e~~~afld~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~   80 (146)
T d1fita_           1 SFRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFS   80 (146)
T ss_dssp             CEEETTEEECGGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CccccccccCcceEEEECCCEEEEECCCCCCCcEEEEEecceehHHHHhhHHHHHHHHHHHHHHHHHHHhhcccceEEEE
Confidence            58999999999999999999999999998           9999999999999999999999999999999999999999


Q ss_pred             EecCCCCCCccCeEEEEEeccCCCCCCCChhhhhhhHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHhhcC
Q 047991           74 IQDGPQAGQSVPHVHIHIVPRKESDFENNDEIYDALDVKEKELKKKLDLDEERKDRSPEERIQEANEYRSLFL  146 (146)
Q Consensus        74 ~n~g~~~gq~v~H~HiHIIPR~~~d~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (146)
                      +|+|+.+||+|+|+|+|||||+.||..+.+..|..+....       ..+-.+..|+.|||+++|++||.+|.
T Consensus        81 ~~~g~~agq~v~HlH~HiiPR~~gD~~~~~~~~~~~~~~~-------~~~~~~~~r~~ee~~~~a~~lr~~~~  146 (146)
T d1fita_          81 MQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHD-------KEDFPASWRSEEEMAAEAAALRVYFQ  146 (146)
T ss_dssp             ECCSGGGTCCSSSCCEEEEEECTTC---------------------------CCCCCHHHHHHHHHHHHHTTC
T ss_pred             EccccccCCCCCEEEEEEecCcCCCcccccchhhhhhhhc-------hhhhhhccCCHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999888887777654332       23444566899999999999999873
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]} Back     information, alignment and structure
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2pofa1 d.13.1.4 (A:31-250) CDP-diacylglycerol pyrophosphatase CDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure