Citrus Sinensis ID: 048009

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-
Protein Sequence
MWRRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGAPGRNAAGIVLQDLKKSLN
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEcccHHHHHHHHHHHHccccEEEEccccccccEEEEEEccccEEEcccccccccccHHHHHccccccccccEEEEcccEEccccccccHHHHHHHHHHHcccccHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccEEEcccEEEEEEEccccEEEEEEcccccEEEccEEEEcccHHHHHHHHcccccccHHHHHHHHcccccccEEEEEEEEccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHccccccccEEEEEcccccccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEccHHHHHHHHcccccccccccccccccccccccccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHcccccccccccEEEccEEEEccEHHHHHHHHHHHHccccEEEEccccccEccccEEEccccccccccHHHHHHccHHHHHHHHHcHHcccEccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccEEccccccccccHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHHcccEEEEcccEEEEEEccccEEEEEEEcccEEEEccEEEEcccHHHHHHHHcccccccHHHHHHHHHccccccEEEEEEEccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHccccccccEEEEEEcccccccccccccEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHccccHHHEEEEEccccHHHHHHHccccccEccccccHHHHHHccccccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mwrrsftsttSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHviggaavteelipgfkfsrcsyLQSLLrpslikcgtriGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDllfdssppellqgsssySHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKAtlatdavigtmssvhtpgsgYVLLHHVmgetdgnpgiwsyveggmgsVSMAIGSAAREAGAHIVTRAEVSQLMIndsgrvngvqladgaqvhssivlsnatpyktfmdlvpgnilpddfilsikhsdyssgttkINLAvdklpqfqccklshpdpgpqhvgtihigseSMEEIHSACQEAVnglpsrrpiiemtipsvldktisppgnhvINLFIqytpykpsdgswmdpayrdsfANRCFSLIdeyapgfsssiigydmltppdlereigltggnifhgamgldslflmrpvkgwsnyrtplqglymcgsgthpgggvmgapgrnaaGIVLQDLKKSLN
Flexible Loop (DISEMBL)
mwrrsftsttsalkekkwDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAavteelipgfkFSRCSYLQSLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGAPGRNAAGIVLqdlkksln
Low Complexity Region (SEG)
MWRRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGAPGRNAAGIVLQDLKKSLN
Disordered region (IsUnstruct)
***************KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFD***************QFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLS*********GTIHI***********C**AVNGL*SRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVM********GIV*********
Disordered Region (DISOPRED)
******************DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGAPGRNAAGIVLQDLKKS**
Disordered Region (DISEMBL)
************LKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGAPGRNAAGIVLQDLKKSLN
Disordered Region (DISPRO)
************LKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGAPGRNAAGIVLQDLKK***
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWRRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGAPGRNAAGIVLQDLKKSLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	531	2.2.26 [Sep-21-2011]
Q8N2H3	581	Pyridine nucleotide-disul	yes	no	0.971	0.888	0.471	1e-141
Q5RAP5	581	Pyridine nucleotide-disul	yes	no	0.973	0.889	0.465	1e-139
Q3MHH6	581	Pyridine nucleotide-disul	yes	no	0.977	0.893	0.463	1e-139
Q68FT3	581	Pyridine nucleotide-disul	yes	no	0.977	0.893	0.469	1e-138
Q3U4I7	580	Pyridine nucleotide-disul	yes	no	0.979	0.896	0.465	1e-138
P64752	535	Uncharacterized protein M	no	no	0.879	0.872	0.284	2e-32
P64751	535	Uncharacterized protein R	no	no	0.879	0.872	0.284	2e-32
P06108	469	Protein p49 OS=Streptomyc	N/A	no	0.845	0.957	0.260	2e-20
Q8S4R4	615	Prolycopene isomerase, ch	N/A	no	0.839	0.725	0.241	6e-20
Q2VEX9	615	Prolycopene isomerase, ch	N/A	no	0.838	0.723	0.234	8e-17

>sp|Q8N2H3|PYRD2_HUMAN Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Homo sapiens GN=PYROXD2 PE=2 SV=2

 Score =  502 bits (1293), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/570 (47%), Positives = 356/570 (62%), Gaps = 54/570 (9%)

Query: 2   WRRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL 61
           WRR  T     LK  ++DA+VIG GHNGL AAAYL R G++ AV ERRHVIGGAAVTEE+
Sbjct: 20  WRRDNTEARGGLK-PEYDAVVIGAGHNGLVAAAYLQRLGVNTAVFERRHVIGGAAVTEEI 78

Query: 62  IPGFKFSRCSYLQSLLRPSLI---------------------------------KC---G 85
           IPGFKFSR SYL SLLRP +                                  +C   G
Sbjct: 79  IPGFKFSRASYLLSLLRPQIYTDLELKKHGLRLHLRNPYSFTPMLEEGAGSKVPRCLLLG 138

Query: 86  TRIGETWNEVVE--AKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSH-QFKN 142
           T + E   ++ +   K   V+  +E+ + + +  +D L D++P ++    +++ H     
Sbjct: 139 TDMAENQKQIAQFSQKDAQVFPKYEEFMHRLALAIDPLLDAAPVDM----AAFQHGSLLQ 194

Query: 143 KIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTM 202
           ++R+ +     L+    LG + L  + ++L +P +KVL++WFE++ LKATLATDAVIG M
Sbjct: 195 RMRSLSTLKPLLKAGRILGAQ-LPRYYEVLTAPITKVLDQWFESEPLKATLATDAVIGAM 253

Query: 203 SSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQ 262
           +S HTPGSGYVLLHHVMG  +G  G W YV+GGMG++S AI S+A   GA I T   V++
Sbjct: 254 TSPHTPGSGYVLLHHVMGGLEGMQGAWGYVQGGMGALSDAIASSATTHGASIFTEKTVAK 313

Query: 263 LMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSG 322
           + +N  G V GV L DG +V S +VLSN +P  TF+ L P   LP++F+  I   D  S 
Sbjct: 314 VQVNSEGCVQGVVLEDGTEVRSKMVLSNTSPQITFLKLTPQEWLPEEFLERISQLDTRSP 373

Query: 323 TTKINLAVDKLPQFQCCKLSHPD-----PGPQHVGTIHIGSESMEEIHSACQEAVNGLPS 377
            TKIN+AVD+LP F    L+ P+     P P H  +IH+  E    +H A ++A++GLPS
Sbjct: 374 VTKINVAVDRLPSF----LAAPNAPRGQPLPHHQCSIHLNCEDTLLLHQAFEDAMDGLPS 429

Query: 378 RRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDE 437
            RP+IE+ IPS LD T++PPG HV++LF QY PY  + G   D   RD++A+R F  I+ 
Sbjct: 430 HRPVIELCIPSSLDPTLAPPGCHVVSLFTQYMPYTLAGGKAWDEQERDAYADRVFDCIEV 489

Query: 438 YAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGL 497
           YAPGF  S++G D+LTPPDLER  GL GGNIFH AM LD L+  RPV   S YR PLQGL
Sbjct: 490 YAPGFKDSVVGRDILTPPDLERIFGLPGGNIFHCAMSLDQLYFARPVPLHSGYRCPLQGL 549

Query: 498 YMCGSGTHPGGGVMGAPGRNAAGIVLQDLK 527
           Y+CGSG HPGGGVMGA GRNAA +  +DLK
Sbjct: 550 YLCGSGAHPGGGVMGAAGRNAAHVAFRDLK 579

Probable oxidoreductase.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q5RAP5|PYRD2_PONAB Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Pongo abelii GN=PYROXD2 PE=2 SV=1

 Score =  495 bits (1274), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 265/569 (46%), Positives = 352/569 (61%), Gaps = 52/569 (9%)

Query: 2   WRRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL 61
           WRR+ T     LK  ++DA+VIG GHNGL  AAYL R G++ AV ERRHVIGGAAVTEE+
Sbjct: 20  WRRAHTEAGGGLK-PEYDAVVIGAGHNGLVVAAYLQRLGVNTAVFERRHVIGGAAVTEEI 78

Query: 62  IPGFKFSRCSYLQSLLRPSL------------------------------------IKCG 85
           IPGFKFSR SYL SLLRP +                                    +  G
Sbjct: 79  IPGFKFSRASYLLSLLRPQIYTDLELKKHGLRLHLRNPYSFTPMLEEGAGSKVPRSLLLG 138

Query: 86  TRIGETWNEVVE--AKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNK 143
           T + E   ++ +   K   V+  +E+ + + +  +D L D++P ++   ++        +
Sbjct: 139 TDMAENQKQIAQFSRKDAQVFPRYEEFMHRLALAIDPLLDAAPVDM---AAFQRGSLLQR 195

Query: 144 IRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMS 203
           +R+ +     L+    LG + L  + ++L +P +KVL++WFE++ LKATLATDAVIG M+
Sbjct: 196 MRSFSTLKPLLKAGRILGAQ-LPRYYEVLTAPITKVLDQWFESEPLKATLATDAVIGAMT 254

Query: 204 SVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQL 263
           S HTPGSGYVLLHHVMG  +G  G W YV+GGMG++S AI S+A   GA I T   V+++
Sbjct: 255 SPHTPGSGYVLLHHVMGGLEGMQGAWGYVQGGMGALSDAIASSATTHGASIFTEKTVAKV 314

Query: 264 MINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGT 323
            +N  G V GV L DG +V S +VLSN +P  TF+ L P   LP++F+  I   D  S  
Sbjct: 315 QVNSEGCVQGVVLEDGTEVRSKVVLSNTSPQITFLKLTPQEWLPEEFLERISQLDTRSPV 374

Query: 324 TKINLAVDKLPQFQCCKLSHPD-----PGPQHVGTIHIGSESMEEIHSACQEAVNGLPSR 378
           TKIN+AVD+LP F    L+ P+     P P H  +IH+  E    +H A ++A++GLPS 
Sbjct: 375 TKINVAVDRLPSF----LAAPNAPRGQPLPHHQCSIHLNCEDTLLLHQAFEDAMDGLPSH 430

Query: 379 RPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEY 438
           RPIIE+ IPS LD  ++P G HV++LF QYTPY  + G   D   RD++A+R F  ++ Y
Sbjct: 431 RPIIELCIPSSLDPPLAPSGCHVVSLFTQYTPYTLAGGKAWDEQERDAYADRVFDCVEVY 490

Query: 439 APGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLY 498
           APGF  S++G D+LTPPDLER  GL GGNIFH AM LD L+  RPV   S YR PLQGLY
Sbjct: 491 APGFKDSVVGRDILTPPDLERIFGLPGGNIFHCAMSLDQLYFARPVPLHSGYRCPLQGLY 550

Query: 499 MCGSGTHPGGGVMGAPGRNAAGIVLQDLK 527
           +CGSG HPGGGVMGA GRNAA +  +DLK
Sbjct: 551 LCGSGAHPGGGVMGAAGRNAAHVAFRDLK 579

Probable oxidoreductase.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q3MHH6|PYRD2_BOVIN Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Bos taurus GN=PYROXD2 PE=2 SV=1

 Score =  494 bits (1272), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 263/567 (46%), Positives = 356/567 (62%), Gaps = 48/567 (8%)

Query: 2   WRRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL 61
           WRR+ + T   LK  ++DA+V+G GHNGL AAAYL R G++ AV ERRHVIGGAAVTEE+
Sbjct: 20  WRRALSDTRGRLK-PEYDAVVVGAGHNGLVAAAYLQRFGVNTAVFERRHVIGGAAVTEEI 78

Query: 62  IPGFKFSRCSYLQSLLRPSL------------------------------------IKCG 85
           +PGFKFSR SYL SLLRP +                                    +  G
Sbjct: 79  VPGFKFSRASYLLSLLRPQIYSELELKKHGLRLHLRNPYSFTPMLEEGTGGKVPRSLLLG 138

Query: 86  TRIGETWNEVVE--AKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQ-GSSSYSHQFKN 142
           T + E   ++ +   K    +  +E  +D+ +  +D L DS+P +L      S   + K+
Sbjct: 139 TDMVENQKQIAQFSKKDAQAFPKYEAFMDRLALAIDPLLDSAPVDLEAFQRGSLLQRLKS 198

Query: 143 KIRNSAFW-AHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGT 201
                  W A C+     LG + L ++  +L +PA+KVL++WFE++ LKATLATDAVIG 
Sbjct: 199 LSTLKPLWQAGCI-----LGAQ-LPQYYQVLTAPAAKVLDQWFESEPLKATLATDAVIGA 252

Query: 202 MSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVS 261
           M++ + PGSGYVLLHHVMG  +G  G W YV+GGMG++S AI S+A   G  I T   V+
Sbjct: 253 MTNPYIPGSGYVLLHHVMGSLEGVRGAWGYVQGGMGALSDAIASSATAHGVSIFTEKTVA 312

Query: 262 QLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSS 321
           ++ ++  GRV GV L DG++V S +VLSNA+P  TF+ L P   LP++F+  I   D  S
Sbjct: 313 KVQVSSGGRVQGVVLQDGSEVRSKVVLSNASPQITFLKLTPQEWLPEEFVARIAQLDTKS 372

Query: 322 GTTKINLAVDKLPQFQCCKLSHPD-PGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRP 380
             TKIN+AV++LP F     +  D P P H  +IH+  E    +H A ++ ++GLPS+RP
Sbjct: 373 PVTKINVAVNRLPDFLAAPNTPGDQPLPHHQCSIHLNCEDTLLVHQAFEDTLDGLPSKRP 432

Query: 381 IIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAP 440
           +IE+ IPS LD T++PPG HV++LF QYTPY  + G   D   R+++A+R F  I+ YAP
Sbjct: 433 LIELCIPSSLDPTLAPPGCHVVSLFTQYTPYTLAGGKAWDEQQRNTYADRVFDCIEAYAP 492

Query: 441 GFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMC 500
           GF  S++G D+LTPPDLER  GL GGNIFH AM LD L+  RPV   S+Y +PL+GLY+C
Sbjct: 493 GFKGSVVGRDILTPPDLERVFGLPGGNIFHCAMSLDQLYFARPVPLHSSYCSPLRGLYLC 552

Query: 501 GSGTHPGGGVMGAPGRNAAGIVLQDLK 527
           GSG HPGGGVMGA GRNAA +V +DL+
Sbjct: 553 GSGAHPGGGVMGAAGRNAAHVVFRDLR 579

Probable oxidoreductase.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q68FT3|PYRD2_RAT Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Rattus norvegicus GN=Pyroxd2 PE=2 SV=1

 Score =  493 bits (1270), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 266/567 (46%), Positives = 352/567 (62%), Gaps = 48/567 (8%)

Query: 2   WRRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL 61
           W+R  +     LK  ++DA+VIG GHNGL AAAYL R G++ AV ERRHVIGGAAVTEE+
Sbjct: 20  WKRVQSGANGCLK-PEYDAVVIGAGHNGLVAAAYLQRLGVNTAVFERRHVIGGAAVTEEI 78

Query: 62  IPGFKFSRCSYLQSLLRPSL------------------------------------IKCG 85
           IPGFKFSR SYL SLLRP +                                    +  G
Sbjct: 79  IPGFKFSRASYLLSLLRPQIYTDLELKKHGLKLHLRNPYSFTPMLEEGTLSKPPRSLLLG 138

Query: 86  TRIGETWNEVVE--AKSIIVYAIFEDQLDKFSQFVDLLFDSSPPEL--LQGSSSYSHQFK 141
           T + E   ++ +   K    +  +E+ + +    +D L D++P ++  LQ  S       
Sbjct: 139 TDVAENQKQISQFSRKDAQAFPRYEEFMKRLVLAIDPLLDAAPVDIAALQHGS-----LL 193

Query: 142 NKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGT 201
            ++R  +     L+   +LG + L ++ ++L +P SKVL++WFE++ LKATLATDAVIG 
Sbjct: 194 QRLRALSTLRPLLKAGRTLGAQ-LPQYYEVLTAPISKVLDQWFESEPLKATLATDAVIGA 252

Query: 202 MSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVS 261
           M+S HTPGSGYVLLHHVMG  +G  G WSYV+GGMG++S AI S+A   GA I T   V+
Sbjct: 253 MTSPHTPGSGYVLLHHVMGSLEGMQGAWSYVQGGMGALSDAIASSATAHGASIFTEKTVA 312

Query: 262 QLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSS 321
           ++ +N  GRV GV L  G +V S +VLS A+P  TF++L P   LP  F+  I   D  S
Sbjct: 313 KVQVNSEGRVQGVVLQGGEEVRSRVVLSCASPQVTFLELTPQEWLPGAFVKRISQLDTQS 372

Query: 322 GTTKINLAVDKLPQFQCCKLSHPD-PGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRP 380
             TKIN+AVD+LP FQ    +  D P   H  +IH+  E    +H A ++A  GLPS+RP
Sbjct: 373 PVTKINVAVDRLPNFQAAPNAPGDQPQAHHQCSIHLNCEDTLLLHQAFEDAKGGLPSQRP 432

Query: 381 IIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAP 440
           +IE+ IPS LD T++P G HV++LF QYTPY  + G   D   ++++A++ F  I+ YAP
Sbjct: 433 MIELCIPSSLDPTLAPTGCHVVSLFTQYTPYTLAGGKVWDEQKKNTYADKVFDCIEAYAP 492

Query: 441 GFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMC 500
           GF  S++G D+LTP DLER  GL GGNIFHGAM LD L+  RPV   S+YR P+QGLY+C
Sbjct: 493 GFKRSVLGRDILTPQDLERIFGLPGGNIFHGAMSLDQLYFARPVPQHSDYRCPVQGLYLC 552

Query: 501 GSGTHPGGGVMGAPGRNAAGIVLQDLK 527
           GSG HPGGGVMGA GRNAA IV +DLK
Sbjct: 553 GSGAHPGGGVMGAAGRNAAHIVFRDLK 579

Probable oxidoreductase.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q3U4I7|PYRD2_MOUSE Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Mus musculus GN=Pyroxd2 PE=2 SV=2

 Score =  491 bits (1263), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 263/565 (46%), Positives = 356/565 (63%), Gaps = 45/565 (7%)

Query: 2   WRRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL 61
           W+R+ +     LK  ++DA+VIG GHNGL AAAYL R G++ AV ERRHVIGGAAVTEE+
Sbjct: 20  WKRAQSGANGRLK-PEYDAVVIGAGHNGLVAAAYLQRLGVNTAVFERRHVIGGAAVTEEI 78

Query: 62  IPGFKFSRCSYLQSLLRPSL----------IKCGTRIGETWNEVVEA-------KSIIVY 104
           IPGFKFSR SYL SLLRP +          +K   R   ++  ++E        +S+++ 
Sbjct: 79  IPGFKFSRASYLLSLLRPQICTDLELKKHGLKLHLRDPYSFTPMLEEGTLNRLPRSLLLG 138

Query: 105 AIFEDQLDKFSQF--------------------VDLLFDSSPPELLQGSSSYSH-QFKNK 143
                   + SQF                    +D L D++P +    ++++ H     +
Sbjct: 139 TDMAANQKEISQFSRKDAQAFPREEFMKRLVLAIDPLLDAAPVD----TTAFHHGSLLQR 194

Query: 144 IRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMS 203
           +   +     L+   +LG + L ++ ++L +P SKVL++WFE++ LKATLATDAVIG M+
Sbjct: 195 LGALSTLKPLLKAGRTLGAQ-LPQYCEVLTAPISKVLDQWFESEPLKATLATDAVIGAMT 253

Query: 204 SVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQL 263
           S HTPGSGYVLLHHVMG  +G  G WSYV+GGMG++S AI S+A   GA I T   V+++
Sbjct: 254 SPHTPGSGYVLLHHVMGSLEGTQGAWSYVQGGMGALSDAIASSAATRGASIFTEKTVAKV 313

Query: 264 MINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGT 323
            +N  GRV GV L DG +V S +VLS A+P  TF++L P   LP  F+  I   D  S  
Sbjct: 314 QVNSEGRVQGVTLQDGEEVRSRVVLSCASPQVTFLELTPQEWLPGAFVKRISQLDTQSPV 373

Query: 324 TKINLAVDKLPQFQCCKLSHPD-PGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPII 382
           TKIN+AVD+LP FQ    +  D P   H  +IH+  E    +H A ++A  GLPS++P+I
Sbjct: 374 TKINVAVDRLPNFQAAPNAPGDQPQGHHQCSIHLNCEDTLLLHQAFEDAKGGLPSQKPMI 433

Query: 383 EMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGF 442
           E+ IPS LD T++PPG HV++LF QYTPY  + G   +   ++++A++ F  I+ YAPGF
Sbjct: 434 ELCIPSSLDPTLAPPGCHVVSLFTQYTPYTLAGGKVWNEQEKNTYADKVFDCIEAYAPGF 493

Query: 443 SSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGS 502
             S++  D+LTPPDLER   L GGNIFHGAM LD L+  RPV   S+YR P+QGLY+CGS
Sbjct: 494 KRSVLARDILTPPDLERIFRLPGGNIFHGAMSLDQLYFARPVPQHSDYRCPVQGLYLCGS 553

Query: 503 GTHPGGGVMGAPGRNAAGIVLQDLK 527
           G HPGGGVMGA GRNAA +V +DLK
Sbjct: 554 GAHPGGGVMGAAGRNAAHVVFRDLK 578

Probable oxidoreductase.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P64752|Y921_MYCBO Uncharacterized protein Mb0921c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb0921c PE=4 SV=1

 Score =  140 bits (354), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 162/569 (28%), Positives = 248/569 (43%), Gaps = 102/569 (17%)

Query: 15  EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFK--FSRCSY 72
           ++ +D +V+GGGHNGL AAAYLARAGL V +LER    GGAAV+ +   G +   SR SY
Sbjct: 5   DRDFDVVVVGGGHNGLVAAAYLARAGLRVRLLERLAQTGGAAVSIQAFDGVEVALSRYSY 64

Query: 73  LQSLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQG 132
           L SLL PS I     + +    V  A+              FS +      +    LL G
Sbjct: 65  LVSLL-PSRI-----VADLGAPVRLARR------------PFSSYTPAPATAGRSGLLIG 106

Query: 133 SSSY--------------SHQF-----KNKIRNSAFWAHCLR--RAISLGQKDLVEF--- 168
            +                +H F     + ++  +  W   +   R     ++D+VE+   
Sbjct: 107 PTGEPRAAHLAAIGAAPDAHGFAAFYRRCRLVTARLWPTLIEPLRTREQARRDIVEYGGH 166

Query: 169 ------VDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPG--SGYVLLHHVMG 220
                   ++  P    +      D+L+  +ATDA+IGT + +H P        L+H++G
Sbjct: 167 EAAAAWQAMVDEPIGHAIAGAVANDLLRGVIATDALIGTFARMHEPSLMQNICFLYHLVG 226

Query: 221 ETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA 280
              G  G+W    GGMGSV+ A+ +AA   GA IVT A+V  L  + + R +    +DGA
Sbjct: 227 ---GGTGVWHVPIGGMGSVTSALATAAARHGAEIVTGADVFALDPDGTVRYHS-DGSDGA 282

Query: 281 Q--VHSSIVLSNATPY-------KTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVD 331
           +  V    VL   TP        +    L PG                     K+N+ V 
Sbjct: 283 EHLVRGRFVLVGVTPAVLASLLGEPVAALAPG------------------AQVKVNMVVR 324

Query: 332 KLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNG-----LPSRRPIIEMTI 386
           +LP+ +   ++   P     GT H+ +E+  ++ +A  +A +G     LP       +T 
Sbjct: 325 RLPRLRDDSVT---PQQAFAGTFHV-NETWSQLDAAYSQAASGRLPDPLPCEAYCHSLTD 380

Query: 387 PSVLDKTISPPGNHVINLFIQYTP---YKPSDG--SWMDPAYRDSFANRCFSLIDEYAPG 441
           PS+L   +   G   + +F  +TP   +  ++G    +  A   S  +     I +    
Sbjct: 381 PSILSARLRDAGAQTLTVFGLHTPHSVFGDTEGLAERLTAAVLASLNSVLAEPIQDVLWT 440

Query: 442 FSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGL----DSLFLMRPVKGWSNYRTPLQGL 497
            + S    +  T  DL+R +G+TGGNIFHGA+      +   L  P + W    T  + +
Sbjct: 441 DAQSKPCIETTTTLDLQRTLGMTGGNIFHGALSWPFADNDDPLDTPARQW-GVATDHERI 499

Query: 498 YMCGSGTHPGGGVMGAPGRNAAGIVLQDL 526
            +CGSG   GG V G  G NAA  VL  L
Sbjct: 500 MLCGSGARRGGAVSGIGGHNAAMAVLACL 528

Mycobacterium bovis (taxid: 1765)

>sp|P64751|Y897_MYCTU Uncharacterized protein Rv0897c/MT0921 OS=Mycobacterium tuberculosis GN=Rv0897c PE=4 SV=1

 Score =  140 bits (354), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 162/569 (28%), Positives = 248/569 (43%), Gaps = 102/569 (17%)

Query: 15  EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFK--FSRCSY 72
           ++ +D +V+GGGHNGL AAAYLARAGL V +LER    GGAAV+ +   G +   SR SY
Sbjct: 5   DRDFDVVVVGGGHNGLVAAAYLARAGLRVRLLERLAQTGGAAVSIQAFDGVEVALSRYSY 64

Query: 73  LQSLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQG 132
           L SLL PS I     + +    V  A+              FS +      +    LL G
Sbjct: 65  LVSLL-PSRI-----VADLGAPVRLARR------------PFSSYTPAPATAGRSGLLIG 106

Query: 133 SSSY--------------SHQF-----KNKIRNSAFWAHCLR--RAISLGQKDLVEF--- 168
            +                +H F     + ++  +  W   +   R     ++D+VE+   
Sbjct: 107 PTGEPRAAHLAAIGAAPDAHGFAAFYRRCRLVTARLWPTLIEPLRTREQARRDIVEYGGH 166

Query: 169 ------VDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPG--SGYVLLHHVMG 220
                   ++  P    +      D+L+  +ATDA+IGT + +H P        L+H++G
Sbjct: 167 EAAAAWQAMVDEPIGHAIAGAVANDLLRGVIATDALIGTFARMHEPSLMQNICFLYHLVG 226

Query: 221 ETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA 280
              G  G+W    GGMGSV+ A+ +AA   GA IVT A+V  L  + + R +    +DGA
Sbjct: 227 ---GGTGVWHVPIGGMGSVTSALATAAARHGAEIVTGADVFALDPDGTVRYHS-DGSDGA 282

Query: 281 Q--VHSSIVLSNATPY-------KTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVD 331
           +  V    VL   TP        +    L PG                     K+N+ V 
Sbjct: 283 EHLVRGRFVLVGVTPAVLASLLGEPVAALAPG------------------AQVKVNMVVR 324

Query: 332 KLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNG-----LPSRRPIIEMTI 386
           +LP+ +   ++   P     GT H+ +E+  ++ +A  +A +G     LP       +T 
Sbjct: 325 RLPRLRDDSVT---PQQAFAGTFHV-NETWSQLDAAYSQAASGRLPDPLPCEAYCHSLTD 380

Query: 387 PSVLDKTISPPGNHVINLFIQYTP---YKPSDG--SWMDPAYRDSFANRCFSLIDEYAPG 441
           PS+L   +   G   + +F  +TP   +  ++G    +  A   S  +     I +    
Sbjct: 381 PSILSARLRDAGAQTLTVFGLHTPHSVFGDTEGLAERLTAAVLASLNSVLAEPIQDVLWT 440

Query: 442 FSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGL----DSLFLMRPVKGWSNYRTPLQGL 497
            + S    +  T  DL+R +G+TGGNIFHGA+      +   L  P + W    T  + +
Sbjct: 441 DAQSKPCIETTTTLDLQRTLGMTGGNIFHGALSWPFADNDDPLDTPARQW-GVATDHERI 499

Query: 498 YMCGSGTHPGGGVMGAPGRNAAGIVLQDL 526
            +CGSG   GG V G  G NAA  VL  L
Sbjct: 500 MLCGSGARRGGAVSGIGGHNAAMAVLACL 528

Mycobacterium tuberculosis (taxid: 1773)

>sp|P06108|P49_STRLI Protein p49 OS=Streptomyces lividans GN=p49 PE=4 SV=1

 Score =  100 bits (250), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 138/529 (26%), Positives = 212/529 (40%), Gaps = 80/529 (15%)

Query: 19  DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL-IPGFKFSRCSYLQSLL 77
           DA+V+G G NGLTAA  LAR G  VAV E +  +GG A TEEL +PGF+   CS    L 
Sbjct: 3   DAVVVGAGPNGLTAAVELARRGFPVAVFEAQGTVGGGARTEELTLPGFRHDPCSAAHPLG 62

Query: 78  RPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYS 137
             S    G  +     E +     + +   +      S+ V    +++     + +  Y 
Sbjct: 63  INSPAFRGLPLERYGLEWLHPGLPMAHPFPDGSAAVLSRSVG---ETAASFGARDAGPYR 119

Query: 138 HQFKNKIRNSAFWAHCLRRAISLG----QKDLVEFVDLLLS--PASKVLNKWFETDVLKA 191
              +  +     W    R  +SL      +D V      L   P S  L + F  +  K 
Sbjct: 120 RLIERFLPR---WDTLARDFMSLPLTALPRDPVTLARFGLVGLPPSTWLMRRFRDEKAKT 176

Query: 192 TLATDAVIGTMSSVHTPGSGYV-----LLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSA 246
             A     G ++ V  P  G+      L+  +     G    W    GG  S+S A+ + 
Sbjct: 177 LFA-----GLVAHVMAPLGGFATGAIGLVFALAAHARG----WPVARGGSQSISDALTAY 227

Query: 247 AREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNIL 306
            ++ G  + T  EV +L              D      + VL  +    T +  + G   
Sbjct: 228 LKDLGGAVHTDYEVKRL--------------DDLPPARAYVLDTS---PTALARIAG--- 267

Query: 307 PDDFILSIKHSDYSSGTT--KINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEI 364
                L   +++Y  G +  KI+ A+D    +   +       P+  GT+ IG++S E  
Sbjct: 268 -----LGSHYANYRYGPSVFKIDYALDGPVPWTAEE-------PRSAGTVQIGADSTEIG 315

Query: 365 HSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPS--DGSWMDPA 422
            +    +       RP +    PSV D T +P G HV   F  Y  + P+  +G   D  
Sbjct: 316 AALHAPSGTDRAPERPFLITVQPSVADPTRAPAGKHV---FWAYG-HVPNGWNGDLTDAM 371

Query: 423 YRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLE-REIGLTGGNIFHGAM-GLDSLFL 480
            R          ++ +APGF   ++      P +L  R     GG+I  GA+ GL    L
Sbjct: 372 ERQ---------LERFAPGFRDRVLARATAGPAELAARNANYVGGDISSGAVSGLQ--LL 420

Query: 481 MRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGAPGRNAAGIVLQDLKKS 529
           +RP      Y TP   +++C S T PG GV G  G NAA  V + L+++
Sbjct: 421 LRPKISLFPYSTPHPAVFICSSATPPGPGVHGMSGHNAAKAVWRRLRQT 469

Streptomyces lividans (taxid: 1916)

>sp|Q8S4R4|CRTSO_SOLLC Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum GN=CRTISO PE=1 SV=1

 Score = 99.4 bits (246), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 127/525 (24%), Positives = 224/525 (42%), Gaps = 79/525 (15%)

Query: 18  WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQ--- 74
           +DA+VIG G  GL AA  LA  G  V VLE+  + GG++   E   G+KF   S +    
Sbjct: 98  YDAIVIGSGIGGLVAATQLAVKGAKVLVLEKYVIPGGSSGFYER-DGYKFDVGSSVMFGF 156

Query: 75  ------SLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQL----DKFSQFVDLLFDS 124
                 +L+  +L   G ++     EV+   + + + +  D       ++  F++ L   
Sbjct: 157 SDKGNLNLITQALAAVGRKL-----EVIPDPTTVHFHLPNDLSVRIHREYDDFIEELVSK 211

Query: 125 SPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISL-GQ--KDLVEFVDL---LLSPASK 178
            P E       YS  +K     ++     L   I L GQ  K  +E + L   L   A  
Sbjct: 212 FPHEKEGIIKFYSECWKIFNSLNSLELKSLEEPIYLFGQFFKKPLECLTLAYYLPQNAGS 271

Query: 179 VLNKWFETDVLKATLATDA-VIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMG 237
           +  K+     L + +  +  ++ T++++ TP     +++  M   D + G  +Y  GG+G
Sbjct: 272 IARKYIRDPGLLSFIDAECFIVSTVNALQTP-----MINASMVLCDRHFGGINYPVGGVG 326

Query: 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTF 297
            ++ ++     + G+ I+ RA V+ +++ D+G+  GV+L+DG + ++  ++SNAT + TF
Sbjct: 327 EIAKSLAKGLDDHGSQILYRANVTSIIL-DNGKAVGVKLSDGRKFYAKTIVSNATRWDTF 385

Query: 298 MDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIG 357
             L+    LP +                   A  K P F                +IH+G
Sbjct: 386 GKLLKAENLPKE-------------EENFQKAYVKAPSFL---------------SIHMG 417

Query: 358 SES------MEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPY 411
            ++       +  H   ++    L      I ++IP+VLD +++P G+H++++F   T  
Sbjct: 418 VKADVLPPDTDCHHFVLEDDWTNLEKPYGSIFLSIPTVLDSSLAPEGHHILHIF---TTS 474

Query: 412 KPSDGSWMDP----AYRDSFANRCFSLIDE-YAPGFSSSIIGYDMLTPPDLEREIGLTGG 466
              D   + P    A ++  A R  S +++   PG  SSI+  ++ TP    R +    G
Sbjct: 475 SIEDWEGLSPKDYEAKKEVVAERIISRLEKTLFPGLKSSILFKEVGTPKTHRRYLARDSG 534

Query: 467 NIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVM 511
                  G     L  P        T + GLY  G    PG GV+
Sbjct: 535 TYGPMPRGTPKGLLGMPFN-----TTAIDGLYCVGDSCFPGQGVI 574

Carotene cis-trans-isomerase that converts 7,9,9'-tri-cis-neurosporene to 9'-cis-neurosporene and 7,9,9',7'-tetra-cis-lycopene (also known as prolycopene) into all-trans-lycopene. Isomerization requires redox-active components, suggesting that isomerization is achieved by a reversible redox reaction acting at specific double bonds. Isomerizes adjacent cis-double bonds at C7 and C9 pairwise into the trans-configuration, but is incapable of isomerizing single cis-double bonds at C9 and C9'.

Solanum lycopersicum (taxid: 4081)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q2VEX9|CRTSO_DAUCA Prolycopene isomerase, chloroplastic OS=Daucus carota GN=CRTISO PE=2 SV=1

 Score = 89.0 bits (219), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 126/538 (23%), Positives = 229/538 (42%), Gaps = 93/538 (17%)

Query: 14  KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYL 73
           + +++DA+VIG G  GL AA  LA  G  V VLE+  + GG++   E   GF F   S +
Sbjct: 94  RSREYDAIVIGSGIGGLVAATQLAVKGAKVLVLEKYLIPGGSSGYYER-DGFTFDVGSSV 152

Query: 74  Q---------SLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDS 124
                     +L+  +L   G ++     EV+   S + + +  +     S  V   ++ 
Sbjct: 153 MFGFSDKGNLNLITQALAAVGCKM-----EVIPDPSTVHFHLPSN----LSVLVHREYNE 203

Query: 125 SPPELLQGSSSYSHQFKNKIRNSAFWAHCLR--RAI-SLGQKDLVEFVDL---------- 171
              EL   +S + H+ +   +   F+  C +   A+ SL  K L E + L          
Sbjct: 204 FFSEL---TSKFPHEKEGIFK---FYGECWKIFNALNSLELKSLEEPIYLFGQFFKKPME 257

Query: 172 -------LLSPASKVLNKWF-ETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETD 223
                  L   A  +  K+  + +VL    A   ++ T++++ TP     +++  M   D
Sbjct: 258 CLTLAYYLPQNAGDIARKFIKDPEVLSFIDAECFIVSTVNALKTP-----MINASMVLCD 312

Query: 224 GNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVH 283
            + G  +Y  GG+G ++ ++     + G+ I  +A V  +++ ++G+  GV+LA+G ++ 
Sbjct: 313 RHYGGINYPVGGVGGIAKSLAKGLVDQGSEIQYKANVKSIIV-ENGKAVGVRLANGNEIF 371

Query: 284 SSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSH 343
           +  ++SNAT + TF  L+  + LP +               K+ +   K P F       
Sbjct: 372 AKNIISNATRWDTFGKLLKQDELPKE----------EENFQKLYI---KAPSFL------ 412

Query: 344 PDPGPQHVGTIHIGSES------MEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPP 397
                    +IH+G +S       +  H   ++  + L      I ++IP+VLD +++P 
Sbjct: 413 ---------SIHLGVKSDVLPPDTDCHHFVLEDDWSNLEVPYGSIFLSIPTVLDSSLAPE 463

Query: 398 GNHVINLFIQYTPYKPSDGSWMD-PAYRDSFANRCFSLID-EYAPGFSSSIIGYDMLTPP 455
           GNH++++F   +       S  D    ++  A+   S ++ +  PG  SSI+  ++ TP 
Sbjct: 464 GNHILHIFTTSSIEDWQGMSQKDYEKKKELVADEIISRLEKKLFPGLQSSIVLKEVGTPK 523

Query: 456 DLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGA 513
              R +    G       G     L  P        T + GLY  G    PG GV+  
Sbjct: 524 THRRYLARDSGTYGPMPQGTPKGLLGMPFN-----TTAIDGLYCVGDSCFPGQGVIAV 576

Carotene cis-trans-isomerase that converts 7,9,9'-tri-cis-neurosporene to 9'-cis-neurosporene and 7,9,9',7'-tetra-cis-lycopene (also known as prolycopene) into all-trans-lycopene. Isomerization requires redox-active components, suggesting that isomerization is achieved by a reversible redox reaction acting at specific double bonds. Isomerizes adjacent cis-double bonds at C7 and C9 pairwise into the trans-configuration, but is incapable of isomerizing single cis-double bonds at C9 and C9'.

Daucus carota (taxid: 4039)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	531
225430760	565	PREDICTED: pyridine nucleotide-disulfide	1.0	0.939	0.748	0.0
224096982	563	predicted protein [Populus trichocarpa]	0.994	0.937	0.749	0.0
255561162	562	phytoene dehydrogenase, putative [Ricinu	0.994	0.939	0.730	0.0
356498359	561	PREDICTED: pyridine nucleotide-disulfide	0.988	0.935	0.716	0.0
356559400	565	PREDICTED: pyridine nucleotide-disulfide	0.990	0.930	0.725	0.0
449457544	567	PREDICTED: pyridine nucleotide-disulfide	1.0	0.936	0.708	0.0
357518317	571	Pyridine nucleotide-disulfide oxidoreduc	0.996	0.926	0.709	0.0
297792223	557	hypothetical protein ARALYDRAFT_495015 [	0.986	0.940	0.701	0.0
18423042	556	FAD/NAD(P)-binding oxidoreductase family	0.986	0.942	0.697	0.0
17979255	556	AT5g49550/K6M13_10 [Arabidopsis thaliana	0.986	0.942	0.695	0.0

>gi|225430760|ref|XP_002266788.1| PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 [Vitis vinifera] gi|297735156|emb|CBI17518.3| unnamed protein product [Vitis vinifera]

 Score =  875 bits (2260), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/565 (74%), Positives = 475/565 (84%), Gaps = 34/565 (6%)

Query: 1   MWRRSFTST---TSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57
           MWRR F+S+   ++ALKEKKWDALVIG GHNGLTA AYLARAGLSVAVLERRH+IGGAAV
Sbjct: 1   MWRRGFSSSAGCSNALKEKKWDALVIGAGHNGLTAGAYLARAGLSVAVLERRHIIGGAAV 60

Query: 58  TEELIPGFKFSRCSYLQSLLRPSLIK----------CGTRIGETWNEVVEAKSIIV---- 103
           TEE+IPGFKFSRCSYLQSLLRPS+IK             R   ++   V+ + +++    
Sbjct: 61  TEEIIPGFKFSRCSYLQSLLRPSVIKELELARHGLKLLKRNPSSFTPCVDGRYLLLGPDK 120

Query: 104 -----------------YAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRN 146
                            Y  +E+QL+ F + +D L DS PPE +QG SS++ + KN +R 
Sbjct: 121 DLNYSEISKFSKRDADAYLRYENQLENFCKLMDPLLDSPPPETMQGLSSFNDRIKNNVRK 180

Query: 147 SAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVH 206
           S FWAHCLR A+SLGQKDLV+F+DLLL+PASKVLN WFETDVLKATLATDAVIG+  SVH
Sbjct: 181 SVFWAHCLRSALSLGQKDLVDFMDLLLAPASKVLNNWFETDVLKATLATDAVIGSTGSVH 240

Query: 207 TPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMIN 266
           TPGSGYVLLHHVMGETDG+ GIWSYVEGGMGSVS+AI  AA+EAGAH+VT AEVSQLMI 
Sbjct: 241 TPGSGYVLLHHVMGETDGDRGIWSYVEGGMGSVSLAISKAAKEAGAHVVTSAEVSQLMIE 300

Query: 267 DSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKI 326
           DSGRVNGV LADG +VHSS+VLSNATPYKTFM+ VP N+LPDDF+ +IK+SDYSSGTTK+
Sbjct: 301 DSGRVNGVLLADGTRVHSSVVLSNATPYKTFMEFVPENVLPDDFLRAIKYSDYSSGTTKM 360

Query: 327 NLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTI 386
           NLAVD LPQFQCCKLSHPD GPQHVGTIHIGSESMEEI SA Q+A NG+PS+RPIIEMTI
Sbjct: 361 NLAVDTLPQFQCCKLSHPDAGPQHVGTIHIGSESMEEIDSASQDATNGIPSQRPIIEMTI 420

Query: 387 PSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSI 446
           PSVLDKTISPPG HVINLFIQYTPYKP DGSW DPAYR+ FA RCF+LIDEYAPGFSS+I
Sbjct: 421 PSVLDKTISPPGQHVINLFIQYTPYKPLDGSWEDPAYRELFAQRCFNLIDEYAPGFSSTI 480

Query: 447 IGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHP 506
           +GYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLY+CGSG HP
Sbjct: 481 LGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYLCGSGAHP 540

Query: 507 GGGVMGAPGRNAAGIVLQDLKKSLN 531
           GGGVMGAPGRNAA +VL+D+KKS N
Sbjct: 541 GGGVMGAPGRNAASVVLEDVKKSFN 565

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096982|ref|XP_002310805.1| predicted protein [Populus trichocarpa] gi|222853708|gb|EEE91255.1| predicted protein [Populus trichocarpa]

 Score =  857 bits (2215), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/562 (74%), Positives = 470/562 (83%), Gaps = 34/562 (6%)

Query: 1   MWRRSFTSTT---SALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57
           MWRRSF++ T   +ALKEKKWDALVIG GHNGLTAAAYLA +GLSVAVLERRHVIGGAAV
Sbjct: 1   MWRRSFSTATNASTALKEKKWDALVIGAGHNGLTAAAYLAGSGLSVAVLERRHVIGGAAV 60

Query: 58  TEELIPGFKFSRCSYLQSLLRPSLIK----------CGTRIGETWNEVVEAKSIIV---- 103
           TEELIPGFKFSRCSYLQSLLRPSLIK             R   ++   ++   +++    
Sbjct: 61  TEELIPGFKFSRCSYLQSLLRPSLIKELELGRHGLKLLKRSPSSFTPCLDGSYLLLGPDR 120

Query: 104 -----------------YAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRN 146
                            Y  +E QL+ F + +D L DS PPE  Q  +S++ + K+K+R 
Sbjct: 121 ELNHSEISKFSVNDANAYHRYEKQLESFCKLMDPLLDSPPPETAQNGASFNDRLKDKLRK 180

Query: 147 SAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVH 206
           SAFWA  +R+A+SLGQKDLV+F+DLLLSPASKVLNKWFETDVLKATLATDAVIG+ +SVH
Sbjct: 181 SAFWASFMRQALSLGQKDLVDFMDLLLSPASKVLNKWFETDVLKATLATDAVIGSTASVH 240

Query: 207 TPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMIN 266
           TPGSGYVLLHHVMGETDG  GIWSYVEGGMGSVS AI +AARE+GAHIVT AEVSQLMI 
Sbjct: 241 TPGSGYVLLHHVMGETDGERGIWSYVEGGMGSVSSAIANAARESGAHIVTSAEVSQLMIK 300

Query: 267 DSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKI 326
           DSG VNGV LADG +V S IVLSNATPYKTF++LVP N LPDDF  ++K+SDYSS TTKI
Sbjct: 301 DSGTVNGVLLADGTEVLSPIVLSNATPYKTFLELVPNNTLPDDFTRALKYSDYSSATTKI 360

Query: 327 NLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTI 386
           NLAVDKLPQFQCCKL+HPD GPQHVGTIHIGSESMEEI  ACQ+AVNG+PSRRP+IEMTI
Sbjct: 361 NLAVDKLPQFQCCKLNHPDAGPQHVGTIHIGSESMEEIDLACQDAVNGVPSRRPVIEMTI 420

Query: 387 PSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSI 446
           PSVLDKTISPPG HVINLF+QYTPYKPSDGSW D AYR+SFA +CFSLI+EYAPGFSSSI
Sbjct: 421 PSVLDKTISPPGKHVINLFVQYTPYKPSDGSWGDSAYRESFAQKCFSLIEEYAPGFSSSI 480

Query: 447 IGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHP 506
           IGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWS+YRTPLQGLY+CGSGTHP
Sbjct: 481 IGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSSYRTPLQGLYLCGSGTHP 540

Query: 507 GGGVMGAPGRNAAGIVLQDLKK 528
           GGGVMGAPGRNAA +VLQD++K
Sbjct: 541 GGGVMGAPGRNAAHVVLQDVEK 562

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561162|ref|XP_002521593.1| phytoene dehydrogenase, putative [Ricinus communis] gi|223539271|gb|EEF40864.1| phytoene dehydrogenase, putative [Ricinus communis]

 Score =  842 bits (2176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/561 (73%), Positives = 469/561 (83%), Gaps = 33/561 (5%)

Query: 1   MWRRSFTSTTSA--LKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT 58
           MW RSFT++T++  L  KKWDAL+IG GHNGLTAAAYLAR GLSVAVLERRHVIGGAAVT
Sbjct: 1   MWWRSFTTSTASRDLLGKKWDALIIGAGHNGLTAAAYLARGGLSVAVLERRHVIGGAAVT 60

Query: 59  EELIPGFKFSRCSYLQSLLRPSLIK----------CGTRIGETWNEVVEAKSIIV----- 103
           EELIPGFKFSRCSYLQSLLRP++IK             R   ++   ++ + +++     
Sbjct: 61  EELIPGFKFSRCSYLQSLLRPTVIKELELGRHGLKLLKRNPSSFTPCLDGRYLLLGPNKE 120

Query: 104 ----------------YAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNS 147
                           Y  +E+QL+KF +F+D   DS PPE LQ  SS++ +FK+K+  S
Sbjct: 121 LNHSEISKFSIRDANAYPRYENQLEKFCEFMDPFLDSPPPESLQRVSSFNVRFKDKMYKS 180

Query: 148 AFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHT 207
           AFWA  LR A SLGQ ++V+F+DLLLSPASKVLNKWFETDVLKATL TDAVIG+  S+HT
Sbjct: 181 AFWARLLRGAFSLGQNEMVDFMDLLLSPASKVLNKWFETDVLKATLGTDAVIGSTGSIHT 240

Query: 208 PGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMIND 267
           PGSGYVLLHHVMGETDG+ GIWSYVEGGMG VS+AI +AAREAGAHIVT AEVS++MIND
Sbjct: 241 PGSGYVLLHHVMGETDGDRGIWSYVEGGMGLVSLAISNAAREAGAHIVTNAEVSEMMIND 300

Query: 268 SGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKIN 327
           SG VNGV LADG QV SS+VLSNATPYKTFM+LVP N+LP+DF+ ++K+SDYSS TTKIN
Sbjct: 301 SGAVNGVLLADGRQVLSSVVLSNATPYKTFMELVPNNVLPEDFVRALKYSDYSSATTKIN 360

Query: 328 LAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIP 387
           +AVDKLPQF+CCKL+HPD GPQH+GTIHIGSESMEEI  ACQ+AVNGLPS+RP+IEMTIP
Sbjct: 361 IAVDKLPQFRCCKLNHPDAGPQHMGTIHIGSESMEEIDLACQDAVNGLPSKRPVIEMTIP 420

Query: 388 SVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSII 447
           S LDK ISPPG HVINLFIQYTPY PSDGSW DPAYR+SFA RCF++IDEYAPGF+SSII
Sbjct: 421 SALDKIISPPGKHVINLFIQYTPYSPSDGSWRDPAYRESFAQRCFNMIDEYAPGFNSSII 480

Query: 448 GYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPG 507
           GYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLY+CGSG+HPG
Sbjct: 481 GYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYLCGSGSHPG 540

Query: 508 GGVMGAPGRNAAGIVLQDLKK 528
           GGVMGAPGRNAA +VLQD+K 
Sbjct: 541 GGVMGAPGRNAAHVVLQDVKN 561

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498359|ref|XP_003518020.1| PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2-like [Glycine max]

 Score =  836 bits (2159), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/558 (71%), Positives = 462/558 (82%), Gaps = 33/558 (5%)

Query: 1   MWRRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEE 60
           MWRRSF+S+T+ALK KKWDALVIGGGHNGLTAAAYLAR GLSVA+LERRHVIGGAAVTEE
Sbjct: 1   MWRRSFSSSTAALKGKKWDALVIGGGHNGLTAAAYLARGGLSVAILERRHVIGGAAVTEE 60

Query: 61  LIPGFKFSRCSYLQSLLRPSLIKCGTRIGETWNEVVEA---------------------- 98
           L+PGFKFSRCSYLQSLLRPS+IK    +G+   +++++                      
Sbjct: 61  LVPGFKFSRCSYLQSLLRPSVIK-ELELGKHGLKLLKSNPSSFTPCLDGRYLLLGPDKDL 119

Query: 99  ----------KSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSA 148
                     K    Y  ++ QL+ F +F+DL+ DS PPE +   SS + + KNK++NS 
Sbjct: 120 NHSEISKFSLKDAQAYPRYQTQLESFCKFMDLVLDSPPPESVHHKSSINEKLKNKLQNSV 179

Query: 149 FWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTP 208
           FWA CLR+  SLGQKD+V+F+DLLLSPASKVLN WFE DVLKATLATDAVIG+ +SVHTP
Sbjct: 180 FWASCLRQVSSLGQKDMVDFMDLLLSPASKVLNNWFEADVLKATLATDAVIGSTASVHTP 239

Query: 209 GSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDS 268
           GSGYVLLHHVMGETDG  GIWSYVEGGMGS+S AIG+AA EAGAH+VT AEVS+L+I +S
Sbjct: 240 GSGYVLLHHVMGETDGERGIWSYVEGGMGSISKAIGNAAIEAGAHVVTNAEVSRLLIENS 299

Query: 269 GRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINL 328
             V GV LADG +VHSSIVLSNATPYKTFM+LV  ++LPDDF+ +IKH+DYSS TTKIN+
Sbjct: 300 STVCGVALADGTEVHSSIVLSNATPYKTFMELVSNDVLPDDFVRAIKHTDYSSATTKINV 359

Query: 329 AVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPS 388
           AVDKLP+F CCKL HP  GPQHV TIHIGSESMEEIHSACQ+AVNG+PSRRP+IEM+IPS
Sbjct: 360 AVDKLPEFHCCKLEHPHAGPQHVATIHIGSESMEEIHSACQDAVNGVPSRRPVIEMSIPS 419

Query: 389 VLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIG 448
           +LDKTISPPG HVINLF+QYTPYKP DG W D  YR+SFA +CF+LIDEYAPGFS+S+IG
Sbjct: 420 ILDKTISPPGKHVINLFVQYTPYKPLDGDWQDHDYRESFAQKCFTLIDEYAPGFSTSVIG 479

Query: 449 YDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGG 508
           YDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRP KGWSNY+TPL+GLY+CGSG HPGG
Sbjct: 480 YDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPAKGWSNYKTPLKGLYLCGSGAHPGG 539

Query: 509 GVMGAPGRNAAGIVLQDL 526
           GVMGAPGRNAA +VLQ++
Sbjct: 540 GVMGAPGRNAARLVLQEV 557

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559400|ref|XP_003547987.1| PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2-like [Glycine max]

 Score =  833 bits (2151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/561 (72%), Positives = 464/561 (82%), Gaps = 35/561 (6%)

Query: 1   MWRRSFTSTTSA----LKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAA 56
           MWRRSF+S+T+A    LK KKWDAL+IGGGHNGLTAAAYLAR GLSVAVLERRHVIGGAA
Sbjct: 1   MWRRSFSSSTAATTATLKGKKWDALIIGGGHNGLTAAAYLARGGLSVAVLERRHVIGGAA 60

Query: 57  VTEELIPGFKFSRCSYLQSLLRPSLIK----------CGTRIGETWNEVVEAKSIIV--- 103
           VTEEL+PGFKFSRCSYLQSLLRPS+IK             R   ++   ++ + +++   
Sbjct: 61  VTEELVPGFKFSRCSYLQSLLRPSVIKELELGKHGLKLLKRNPSSFTPCLDGRYLLLGPD 120

Query: 104 ------------------YAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIR 145
                             Y  +E QL+ F +F+DL+ DS PPE +   SS + + KNKI+
Sbjct: 121 KDLNHSEISKFSLADAQAYPRYESQLESFCKFMDLVLDSPPPESVHHKSSINEKLKNKIQ 180

Query: 146 NSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSV 205
           NS FWA CLR+  SLGQKD+V F+DLLLSPASKVLN WFETDVLKATLATDAVIG+ +SV
Sbjct: 181 NSVFWASCLRQVSSLGQKDMVNFMDLLLSPASKVLNNWFETDVLKATLATDAVIGSTASV 240

Query: 206 HTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMI 265
           HTPGSGYVLLHHVMGETDG  GIWSYVEGGMGS+S AIG+AA EAGAH+VT AEVS+L+I
Sbjct: 241 HTPGSGYVLLHHVMGETDGERGIWSYVEGGMGSISKAIGNAAIEAGAHVVTNAEVSRLLI 300

Query: 266 NDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTK 325
            ++  V GV LADG +VHSSIVLSNATPYKTFM+LVP +ILPDDF+ +IKHSDYSS TTK
Sbjct: 301 ENTSTVCGVTLADGTEVHSSIVLSNATPYKTFMELVPNDILPDDFVRAIKHSDYSSATTK 360

Query: 326 INLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMT 385
           +N+AVDKLP+F+CCKL HP  GPQHVGTIHIGSESMEEIHSACQ+AVNG+PSRRP+IEMT
Sbjct: 361 LNVAVDKLPEFRCCKLDHPHAGPQHVGTIHIGSESMEEIHSACQDAVNGVPSRRPVIEMT 420

Query: 386 IPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSS 445
           IPSVLDKTISPPG HVINLF+QYTPYKP DG W D  YR+SFA +CF LIDEYAPGFS+S
Sbjct: 421 IPSVLDKTISPPGKHVINLFVQYTPYKPLDGDWQDHDYRESFAQKCFKLIDEYAPGFSTS 480

Query: 446 IIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTH 505
           IIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRP KGWSNY+TPL+GLY+CGSG H
Sbjct: 481 IIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPAKGWSNYKTPLRGLYLCGSGAH 540

Query: 506 PGGGVMGAPGRNAAGIVLQDL 526
           PGGGVMGAPGRNAA +VLQ++
Sbjct: 541 PGGGVMGAPGRNAARLVLQEV 561

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457544|ref|XP_004146508.1| PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2-like [Cucumis sativus] gi|449525516|ref|XP_004169763.1| PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2-like [Cucumis sativus]

 Score =  827 bits (2135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/567 (70%), Positives = 462/567 (81%), Gaps = 36/567 (6%)

Query: 1   MWRRSFTSTTSA-----LKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGA 55
           MWRRSF S T+A     LK +KWDALVIGGGHNGLTAAAYLAR GLSVAVLERRHV+GGA
Sbjct: 1   MWRRSFRSATTAGSTSVLKNQKWDALVIGGGHNGLTAAAYLARGGLSVAVLERRHVLGGA 60

Query: 56  AVTEELIPGFKFSRCSYLQSLLRPSLIK-----------------------------CGT 86
           AVTEE+IPGFKFSRCSYLQSLLRPS+IK                              G 
Sbjct: 61  AVTEEIIPGFKFSRCSYLQSLLRPSVIKELELARHGLKLLKRNPSSFTPCLDGRYLLLGP 120

Query: 87  RIGETWNEVVE--AKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKI 144
                ++E+ +   +    Y  +E QL++F +F+D+L DS  PE + G SS  ++ ++K+
Sbjct: 121 NKDLNYSEISKFSKRDADAYTRYEAQLERFCKFMDILLDSPTPETMHGVSSLKYRLEDKL 180

Query: 145 RNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSS 204
             SAFWA CLR A+SLGQKDLV+F+DLL SPASKVLN WFE DVLKATLATDA+IG+++S
Sbjct: 181 EKSAFWAKCLRSALSLGQKDLVDFMDLLFSPASKVLNNWFEGDVLKATLATDAIIGSVAS 240

Query: 205 VHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLM 264
           VHTPGSGYVLLHHVMGETDG+ GIWSYVEGGMGSVSMAI +AAR+AGAHI+T AEVS+ M
Sbjct: 241 VHTPGSGYVLLHHVMGETDGDRGIWSYVEGGMGSVSMAIANAARDAGAHIITNAEVSECM 300

Query: 265 INDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTT 324
           I DSGRV GV+L DG  V +S VLSNATPYKTFM+L+P +ILPD+F+ +IKH DY S TT
Sbjct: 301 IEDSGRVKGVRLVDGTCVQASTVLSNATPYKTFMELLPHDILPDEFLRAIKHIDYRSATT 360

Query: 325 KINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEM 384
           KINLAV+K+PQF CC LS  +   Q VGTIHIG+ESMEEI SACQ+AVNG+PSRRPIIEM
Sbjct: 361 KINLAVEKVPQFPCCNLSPSESRHQLVGTIHIGAESMEEIDSACQDAVNGIPSRRPIIEM 420

Query: 385 TIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSS 444
           TIPS+LD+TISPPG HVINLFIQYTPYKPSDGSW DP YR+SFA RCFSLIDEYAPGFSS
Sbjct: 421 TIPSILDQTISPPGKHVINLFIQYTPYKPSDGSWEDPVYRESFAQRCFSLIDEYAPGFSS 480

Query: 445 SIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGT 504
           SIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFL+RPVKGWSNYR+P++GLY+CGSG+
Sbjct: 481 SIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLLRPVKGWSNYRSPVKGLYLCGSGS 540

Query: 505 HPGGGVMGAPGRNAAGIVLQDLKKSLN 531
           HPGGGVMGAPGRNAA +VLQDL + L+
Sbjct: 541 HPGGGVMGAPGRNAANLVLQDLNRQLS 567

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518317|ref|XP_003629447.1| Pyridine nucleotide-disulfide oxidoreductase domain-containing protein [Medicago truncatula] gi|355523469|gb|AET03923.1| Pyridine nucleotide-disulfide oxidoreductase domain-containing protein [Medicago truncatula]

 Score =  817 bits (2111), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/571 (70%), Positives = 465/571 (81%), Gaps = 42/571 (7%)

Query: 1   MWRRSFTSTTS----ALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAA 56
           MWRR FT+T S    AL +KKWDAL+IGGGHNGLTAAAYLAR GLSVAVLERRH+IGGAA
Sbjct: 1   MWRRKFTTTISGSAAALTDKKWDALIIGGGHNGLTAAAYLARGGLSVAVLERRHIIGGAA 60

Query: 57  VTEELIPGFKFSRCSYLQSLLRPSLI----------KCGTRIGETWNEVVEAKSIIV--- 103
           VTEELIPGFKFSRCSYLQSLLRP++I          K   R   ++   ++ + +++   
Sbjct: 61  VTEELIPGFKFSRCSYLQSLLRPAVINELELAKHGLKLLKRNPSSFTPCLDGRYLLLGPD 120

Query: 104 ------------------YAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIR 145
                             Y  +E QL+ F +F+DL+ DSSPPE LQ  SS + Q KNK++
Sbjct: 121 KDLNHSQISKFSKADADAYPKYESQLETFCKFMDLVLDSSPPESLQHKSSLNEQLKNKLQ 180

Query: 146 NSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTM--- 202
           NS FWA CLR A S+GQKD+V+F+DLLLSPASKVLN WFE DVLKATLATDAVIG+    
Sbjct: 181 NSVFWASCLRHAASMGQKDMVDFMDLLLSPASKVLNNWFEADVLKATLATDAVIGSTVRA 240

Query: 203 ----SSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRA 258
               +SVHTPGSGYVLLHHVMGE+DG  GIWSYVEGGMGS+S AI SAA  AGAH+ T A
Sbjct: 241 VISSASVHTPGSGYVLLHHVMGESDGERGIWSYVEGGMGSISKAIASAAVAAGAHVATNA 300

Query: 259 EVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSD 318
           EVSQL+I +S  V+GV LADG +VH+S+VLSNATPYKTFMDLVP N+LPDDF  +IKHSD
Sbjct: 301 EVSQLLIKNSSTVSGVILADGTEVHASVVLSNATPYKTFMDLVPNNVLPDDFSRAIKHSD 360

Query: 319 YSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSR 378
           YSS TTKIN+AVDKLPQFQCCK +H   GP+HVGTIHIGSESMEEIHSA Q++VNG+PSR
Sbjct: 361 YSSATTKINVAVDKLPQFQCCKSNHSQAGPEHVGTIHIGSESMEEIHSASQDSVNGIPSR 420

Query: 379 RPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEY 438
           RP+IEMTIPSVLDKTISPPG HVINLF+QYTPYKPSDG W D  YR+SFA +CF+LIDEY
Sbjct: 421 RPVIEMTIPSVLDKTISPPGMHVINLFVQYTPYKPSDGDWQDHEYRESFAQKCFTLIDEY 480

Query: 439 APGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLY 498
           APGFS+S++GYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNY+TPL+GLY
Sbjct: 481 APGFSTSVVGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYKTPLKGLY 540

Query: 499 MCGSGTHPGGGVMGAPGRNAAGIVLQDLKKS 529
           +CGSG HPGGGVMGAPGRNAA +VLQD++K+
Sbjct: 541 LCGSGAHPGGGVMGAPGRNAAHLVLQDIRKT 571

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792223|ref|XP_002863996.1| hypothetical protein ARALYDRAFT_495015 [Arabidopsis lyrata subsp. lyrata] gi|297309831|gb|EFH40255.1| hypothetical protein ARALYDRAFT_495015 [Arabidopsis lyrata subsp. lyrata]

 Score =  814 bits (2102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/560 (70%), Positives = 457/560 (81%), Gaps = 36/560 (6%)

Query: 1   MWRRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEE 60
           MWRRSF    S L +KKWDA+VIGGGHNGLTAAAYLAR GLSVAVLERRHVIGGAAVTEE
Sbjct: 1   MWRRSF----STLPKKKWDAVVIGGGHNGLTAAAYLARGGLSVAVLERRHVIGGAAVTEE 56

Query: 61  LIPGFKFSRCSYLQSLLRPSLI----------KCGTRIGETWNEVVEAKSIIV------- 103
           ++PGFKFSRCSYLQSLLRP +I          K   R   ++   ++ + +++       
Sbjct: 57  IVPGFKFSRCSYLQSLLRPCIIRELELGRHGLKLLKRSPSSFTPCLDGRYLLLGPDQDLT 116

Query: 104 --------------YAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAF 149
                         Y  +E QL++F  F+D L D++PPE LQG+SS++ +  NK+  SAF
Sbjct: 117 HSEISKFSKHDAHAYPRYEKQLERFCGFMDPLLDATPPESLQGASSFNDKLSNKMYKSAF 176

Query: 150 WAHCLRRAISLGQKDLV-EFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTP 208
           WA CLR+A+SLG KD+V +F+DLLL+PASKVLN WFE+DVLKATLATDAVIG+ +SVHTP
Sbjct: 177 WARCLRQAVSLGHKDMVYDFMDLLLAPASKVLNNWFESDVLKATLATDAVIGSTASVHTP 236

Query: 209 GSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDS 268
           GSGYVLLHHVMGETDG  GIWSYVEGGMGSVSMAI +AA++AGA I T AEVS+++  DS
Sbjct: 237 GSGYVLLHHVMGETDGEKGIWSYVEGGMGSVSMAIANAAKQAGAEIFTNAEVSEILTEDS 296

Query: 269 GRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINL 328
             V GV LADG +V SS +LSNATPYKT+++LVP N+LP++FI +IK+SDYSS TTKINL
Sbjct: 297 SIVKGVLLADGTRVESSAILSNATPYKTYVELVPTNVLPENFIGAIKNSDYSSATTKINL 356

Query: 329 AVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPS 388
           AVDKLPQFQCC  +H  PGP+H GTIHIG+ESM+E+HSAC ++ NGLPSRRP+IEMTIPS
Sbjct: 357 AVDKLPQFQCCNTNHSSPGPEHFGTIHIGAESMDEVHSACHDSENGLPSRRPVIEMTIPS 416

Query: 389 VLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIG 448
            LD TISPPG HVINLFIQYTPYKPSDG+W DP YR++FA RCF LIDEYAPGFSSSII 
Sbjct: 417 TLDNTISPPGKHVINLFIQYTPYKPSDGNWEDPTYREAFAQRCFKLIDEYAPGFSSSIIS 476

Query: 449 YDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGG 508
           YDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYR+PL+GLY+CGSG HPGG
Sbjct: 477 YDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRSPLKGLYLCGSGVHPGG 536

Query: 509 GVMGAPGRNAAGIVLQDLKK 528
           GVMGAPGRNAA +VLQDLKK
Sbjct: 537 GVMGAPGRNAAHVVLQDLKK 556

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18423042|ref|NP_568712.1| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana] gi|332008446|gb|AED95829.1| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]

 Score =  813 bits (2100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/559 (69%), Positives = 454/559 (81%), Gaps = 35/559 (6%)

Query: 1   MWRRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEE 60
           MWRRSF    S L +KKWDA+VIGGGHNGLTAAAYLAR GLSVAVLERRHVIGGAAVTEE
Sbjct: 1   MWRRSF----STLPKKKWDAVVIGGGHNGLTAAAYLARGGLSVAVLERRHVIGGAAVTEE 56

Query: 61  LIPGFKFSRCSYLQSLLRPSLI----------KCGTRIGETWNEVVEAKSIIV------- 103
           ++PGFKFSRCSYLQ LLRP +I          K   R   ++   ++ + +++       
Sbjct: 57  IVPGFKFSRCSYLQGLLRPCIIRELELGRHGLKLLKRSPSSFTPCLDGRYLLLGPDQDLN 116

Query: 104 --------------YAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAF 149
                         Y  +E QL++F  F+D L DS+PPE LQ +SS++ +  NK+  SAF
Sbjct: 117 HSEISKFSKHDADAYPRYEKQLERFCGFMDPLLDSTPPESLQSASSFNDKLSNKMYKSAF 176

Query: 150 WAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPG 209
           WA CLR+A+SLG KD+V F+DLLL+PASKVLN WFE+DVLKA+LATDAVIG+ +SVHTPG
Sbjct: 177 WARCLRQAVSLGHKDMVAFMDLLLAPASKVLNNWFESDVLKASLATDAVIGSTASVHTPG 236

Query: 210 SGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSG 269
           SGYVLLHHVMGETDG  GIWSYVEGGMGSVSMAI +AA+EAGA I T AEVS+++  DS 
Sbjct: 237 SGYVLLHHVMGETDGEKGIWSYVEGGMGSVSMAIANAAKEAGAEIFTNAEVSEILTEDSS 296

Query: 270 RVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLA 329
            V GV LADG +V SS +LSNATPY+T+++LVP N+LP++F+ +IK+SDYSS TTKINLA
Sbjct: 297 IVKGVLLADGTRVESSAILSNATPYRTYVELVPTNVLPENFVSAIKNSDYSSATTKINLA 356

Query: 330 VDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSV 389
           VDKLPQFQCC  +H  PGP+H GTIHIG+ESM+E+HSAC ++ NGLPSRRP+IEMTIPS 
Sbjct: 357 VDKLPQFQCCNTNHSGPGPEHFGTIHIGAESMDEVHSACHDSENGLPSRRPVIEMTIPST 416

Query: 390 LDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGY 449
           LD TISPPG HVINLFIQYTPYKPSDGSW DP YR++FA RCF LIDEYAPGFSSSII Y
Sbjct: 417 LDNTISPPGKHVINLFIQYTPYKPSDGSWEDPTYREAFAQRCFKLIDEYAPGFSSSIISY 476

Query: 450 DMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGG 509
           DMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYR+PL+GLY+CGSG HPGGG
Sbjct: 477 DMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRSPLKGLYLCGSGAHPGGG 536

Query: 510 VMGAPGRNAAGIVLQDLKK 528
           VMGAPGRNAA +VLQDLK+
Sbjct: 537 VMGAPGRNAAHVVLQDLKR 555

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17979255|gb|AAL49944.1| AT5g49550/K6M13_10 [Arabidopsis thaliana] gi|29028742|gb|AAO64750.1| At5g49550/K6M13_10 [Arabidopsis thaliana]

 Score =  812 bits (2097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/559 (69%), Positives = 454/559 (81%), Gaps = 35/559 (6%)

Query: 1   MWRRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEE 60
           MWRRSF    S L +KKW+A+VIGGGHNGLTAAAYLAR GLSVAVLERRHVIGGAAVTEE
Sbjct: 1   MWRRSF----STLPKKKWEAVVIGGGHNGLTAAAYLARGGLSVAVLERRHVIGGAAVTEE 56

Query: 61  LIPGFKFSRCSYLQSLLRPSLI----------KCGTRIGETWNEVVEAKSIIV------- 103
           ++PGFKFSRCSYLQ LLRP +I          K   R   ++   ++ + +++       
Sbjct: 57  IVPGFKFSRCSYLQGLLRPCIIRELELGRHGLKLLKRSPSSFTPCLDGRYLLLGPDQDLN 116

Query: 104 --------------YAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAF 149
                         Y  +E QL++F  F+D L DS+PPE LQ +SS++ +  NK+  SAF
Sbjct: 117 HSEISKFSKHDADAYPRYEKQLERFCGFMDPLLDSTPPESLQSASSFNDKLSNKMYKSAF 176

Query: 150 WAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPG 209
           WA CLR+A+SLG KD+V F+DLLL+PASKVLN WFE+DVLKA+LATDAVIG+ +SVHTPG
Sbjct: 177 WARCLRQAVSLGHKDMVAFMDLLLAPASKVLNNWFESDVLKASLATDAVIGSTASVHTPG 236

Query: 210 SGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSG 269
           SGYVLLHHVMGETDG  GIWSYVEGGMGSVSMAI +AA+EAGA I T AEVS+++  DS 
Sbjct: 237 SGYVLLHHVMGETDGEKGIWSYVEGGMGSVSMAIANAAKEAGAEIFTNAEVSEILTEDSS 296

Query: 270 RVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLA 329
            V GV LADG +V SS +LSNATPY+T+++LVP N+LP++F+ +IK+SDYSS TTKINLA
Sbjct: 297 IVKGVLLADGTRVESSAILSNATPYRTYVELVPTNVLPENFVSAIKNSDYSSATTKINLA 356

Query: 330 VDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSV 389
           VDKLPQFQCC  +H  PGP+H GTIHIG+ESM+E+HSAC ++ NGLPSRRP+IEMTIPS 
Sbjct: 357 VDKLPQFQCCNTNHSGPGPEHFGTIHIGAESMDEVHSACHDSENGLPSRRPVIEMTIPST 416

Query: 390 LDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGY 449
           LD TISPPG HVINLFIQYTPYKPSDGSW DP YR++FA RCF LIDEYAPGFSSSII Y
Sbjct: 417 LDNTISPPGKHVINLFIQYTPYKPSDGSWEDPTYREAFAQRCFKLIDEYAPGFSSSIISY 476

Query: 450 DMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGG 509
           DMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYR+PL+GLY+CGSG HPGGG
Sbjct: 477 DMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRSPLKGLYLCGSGAHPGGG 536

Query: 510 VMGAPGRNAAGIVLQDLKK 528
           VMGAPGRNAA +VLQDLK+
Sbjct: 537 VMGAPGRNAAHVVLQDLKR 555

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	531
TAIR|locus:505006683	556	AT5G49555 [Arabidopsis thalian	0.800	0.764	0.752	2.7e-215
UNIPROTKB|Q8N2H3	581	PYROXD2 "Pyridine nucleotide-d	0.836	0.764	0.467	7.6e-133
UNIPROTKB|Q3MHH6	581	PYROXD2 "Pyridine nucleotide-d	0.834	0.762	0.464	2.3e-131
RGD|1303232	581	Pyroxd2 "pyridine nucleotide-d	0.836	0.764	0.467	1.3e-130
MGI|MGI:1921830	580	Pyroxd2 "pyridine nucleotide-d	0.781	0.715	0.483	3.8e-129
ZFIN|ZDB-GENE-050506-147	571	pyroxd2 "pyridine nucleotide-d	0.830	0.772	0.469	3.8e-127
WB|WBGene00018146	544	F37C4.6 [Caenorhabditis elegan	0.674	0.658	0.520	1e-126
UNIPROTKB|O07794	536	Rv3829c "PROBABLE DEHYDROGENAS	0.952	0.944	0.252	2.4e-37
TAIR|locus:2033055	595	CRTISO "carotenoid isomerase"	0.241	0.215	0.259	1.6e-16
UNIPROTKB|P21685	492	crtI "Phytoene desaturase (lyc	0.237	0.256	0.291	6.3e-16

TAIR|locus:505006683 AT5G49555 [Arabidopsis thaliana (taxid:3702)]

 Score = 1755 (622.8 bits), Expect = 2.7e-215, Sum P(2) = 2.7e-215
 Identities = 320/425 (75%), Positives = 371/425 (87%)

Query:   104 YAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQK 163
             Y  +E QL++F  F+D L DS+PPE LQ +SS++ +  NK+  SAFWA CLR+A+SLG K
Sbjct:   131 YPRYEKQLERFCGFMDPLLDSTPPESLQSASSFNDKLSNKMYKSAFWARCLRQAVSLGHK 190

Query:   164 DLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETD 223
             D+V F+DLLL+PASKVLN WFE+DVLKA+LATDAVIG+ +SVHTPGSGYVLLHHVMGETD
Sbjct:   191 DMVAFMDLLLAPASKVLNNWFESDVLKASLATDAVIGSTASVHTPGSGYVLLHHVMGETD 250

Query:   224 GNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVH 283
             G  GIWSYVEGGMGSVSMAI +AA+EAGA I T AEVS+++  DS  V GV LADG +V 
Sbjct:   251 GEKGIWSYVEGGMGSVSMAIANAAKEAGAEIFTNAEVSEILTEDSSIVKGVLLADGTRVE 310

Query:   284 SSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSH 343
             SS +LSNATPY+T+++LVP N+LP++F+ +IK+SDYSS TTKINLAVDKLPQFQCC  +H
Sbjct:   311 SSAILSNATPYRTYVELVPTNVLPENFVSAIKNSDYSSATTKINLAVDKLPQFQCCNTNH 370

Query:   344 PDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVIN 403
               PGP+H GTIHIG+ESM+E+HSAC ++ NGLPSRRP+IEMTIPS LD TISPPG HVIN
Sbjct:   371 SGPGPEHFGTIHIGAESMDEVHSACHDSENGLPSRRPVIEMTIPSTLDNTISPPGKHVIN 430

Query:   404 LFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGL 463
             LFIQYTPYKPSDGSW DP YR++FA RCF LIDEYAPGFSSSII YDMLTPPDLEREIGL
Sbjct:   431 LFIQYTPYKPSDGSWEDPTYREAFAQRCFKLIDEYAPGFSSSIISYDMLTPPDLEREIGL 490

Query:   464 TGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGAPGRNAAGIVL 523
             TGGNIFHGAMGLDSLFLMRPVKGWSNYR+PL+GLY+CGSG HPGGGVMGAPGRNAA +VL
Sbjct:   491 TGGNIFHGAMGLDSLFLMRPVKGWSNYRSPLKGLYLCGSGAHPGGGVMGAPGRNAAHVVL 550

Query:   524 QDLKK 528
             QDLK+
Sbjct:   551 QDLKR 555

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|Q8N2H3 PYROXD2 "Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 1048 (374.0 bits), Expect = 7.6e-133, Sum P(2) = 7.6e-133
 Identities = 212/453 (46%), Positives = 290/453 (64%)

Query:    79 PSLIKCGTRIGETWNEVVE--AKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSY 136
             P  +  GT + E   ++ +   K   V+  +E+ + + +  +D L D++P ++    +++
Sbjct:   132 PRCLLLGTDMAENQKQIAQFSQKDAQVFPKYEEFMHRLALAIDPLLDAAPVDM----AAF 187

Query:   137 SH-QFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLAT 195
              H     ++R+ +     L+    LG + L  + ++L +P +KVL++WFE++ LKATLAT
Sbjct:   188 QHGSLLQRMRSLSTLKPLLKAGRILGAQ-LPRYYEVLTAPITKVLDQWFESEPLKATLAT 246

Query:   196 DAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIV 255
             DAVIG M+S HTPGSGYVLLHHVMG  +G  G W YV+GGMG++S AI S+A   GA I 
Sbjct:   247 DAVIGAMTSPHTPGSGYVLLHHVMGGLEGMQGAWGYVQGGMGALSDAIASSATTHGASIF 306

Query:   256 TRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIK 315
             T   V+++ +N  G V GV L DG +V S +VLSN +P  TF+ L P   LP++F+  I 
Sbjct:   307 TEKTVAKVQVNSEGCVQGVVLEDGTEVRSKMVLSNTSPQITFLKLTPQEWLPEEFLERIS 366

Query:   316 HSDYSSGTTKINLAVDKLPQFQCC-KLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNG 374
               D  S  TKIN+AVD+LP F          P P H  +IH+  E    +H A ++A++G
Sbjct:   367 QLDTRSPVTKINVAVDRLPSFLAAPNAPRGQPLPHHQCSIHLNCEDTLLLHQAFEDAMDG 426

Query:   375 LPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSL 434
             LPS RP+IE+ IPS LD T++PPG HV++LF QY PY  + G   D   RD++A+R F  
Sbjct:   427 LPSHRPVIELCIPSSLDPTLAPPGCHVVSLFTQYMPYTLAGGKAWDEQERDAYADRVFDC 486

Query:   435 IDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPL 494
             I+ YAPGF  S++G D+LTPPDLER  GL GGNIFH AM LD L+  RPV   S YR PL
Sbjct:   487 IEVYAPGFKDSVVGRDILTPPDLERIFGLPGGNIFHCAMSLDQLYFARPVPLHSGYRCPL 546

Query:   495 QGLYMCGSGTHPGGGVMGAPGRNAAGIVLQDLK 527
             QGLY+CGSG HPGGGVMGA GRNAA +  +DLK
Sbjct:   547 QGLYLCGSGAHPGGGVMGAAGRNAAHVAFRDLK 579

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|Q3MHH6 PYROXD2 "Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2" [Bos taurus (taxid:9913)]

 Score = 1033 (368.7 bits), Expect = 2.3e-131, Sum P(2) = 2.3e-131
 Identities = 211/454 (46%), Positives = 293/454 (64%)

Query:    79 PSLIKCGTRIGETWNEVVE--AKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGS-SS 135
             P  +  GT + E   ++ +   K    +  +E  +D+ +  +D L DS+P +L      S
Sbjct:   132 PRSLLLGTDMVENQKQIAQFSKKDAQAFPKYEAFMDRLALAIDPLLDSAPVDLEAFQRGS 191

Query:   136 YSHQFKNKIRNSAFW-AHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLA 194
                + K+       W A C+     LG + L ++  +L +PA+KVL++WFE++ LKATLA
Sbjct:   192 LLQRLKSLSTLKPLWQAGCI-----LGAQ-LPQYYQVLTAPAAKVLDQWFESEPLKATLA 245

Query:   195 TDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHI 254
             TDAVIG M++ + PGSGYVLLHHVMG  +G  G W YV+GGMG++S AI S+A   G  I
Sbjct:   246 TDAVIGAMTNPYIPGSGYVLLHHVMGSLEGVRGAWGYVQGGMGALSDAIASSATAHGVSI 305

Query:   255 VTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSI 314
              T   V+++ ++  GRV GV L DG++V S +VLSNA+P  TF+ L P   LP++F+  I
Sbjct:   306 FTEKTVAKVQVSSGGRVQGVVLQDGSEVRSKVVLSNASPQITFLKLTPQEWLPEEFVARI 365

Query:   315 KHSDYSSGTTKINLAVDKLPQFQCCKLSHPD-PGPQHVGTIHIGSESMEEIHSACQEAVN 373
                D  S  TKIN+AV++LP F     +  D P P H  +IH+  E    +H A ++ ++
Sbjct:   366 AQLDTKSPVTKINVAVNRLPDFLAAPNTPGDQPLPHHQCSIHLNCEDTLLVHQAFEDTLD 425

Query:   374 GLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFS 433
             GLPS+RP+IE+ IPS LD T++PPG HV++LF QYTPY  + G   D   R+++A+R F 
Sbjct:   426 GLPSKRPLIELCIPSSLDPTLAPPGCHVVSLFTQYTPYTLAGGKAWDEQQRNTYADRVFD 485

Query:   434 LIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTP 493
              I+ YAPGF  S++G D+LTPPDLER  GL GGNIFH AM LD L+  RPV   S+Y +P
Sbjct:   486 CIEAYAPGFKGSVVGRDILTPPDLERVFGLPGGNIFHCAMSLDQLYFARPVPLHSSYCSP 545

Query:   494 LQGLYMCGSGTHPGGGVMGAPGRNAAGIVLQDLK 527
             L+GLY+CGSG HPGGGVMGA GRNAA +V +DL+
Sbjct:   546 LRGLYLCGSGAHPGGGVMGAAGRNAAHVVFRDLR 579

GO:0016491 "oxidoreductase activity" evidence=IEA

RGD|1303232 Pyroxd2 "pyridine nucleotide-disulphide oxidoreductase domain 2" [Rattus norvegicus (taxid:10116)]

 Score = 1035 (369.4 bits), Expect = 1.3e-130, Sum P(2) = 1.3e-130
 Identities = 212/453 (46%), Positives = 291/453 (64%)

Query:    79 PSLIKCGTRIGETWNEVVE--AKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSY 136
             P  +  GT + E   ++ +   K    +  +E+ + +    +D L D++P ++    ++ 
Sbjct:   132 PRSLLLGTDVAENQKQISQFSRKDAQAFPRYEEFMKRLVLAIDPLLDAAPVDI----AAL 187

Query:   137 SH-QFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLAT 195
              H     ++R  +     L+   +LG + L ++ ++L +P SKVL++WFE++ LKATLAT
Sbjct:   188 QHGSLLQRLRALSTLRPLLKAGRTLGAQ-LPQYYEVLTAPISKVLDQWFESEPLKATLAT 246

Query:   196 DAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIV 255
             DAVIG M+S HTPGSGYVLLHHVMG  +G  G WSYV+GGMG++S AI S+A   GA I 
Sbjct:   247 DAVIGAMTSPHTPGSGYVLLHHVMGSLEGMQGAWSYVQGGMGALSDAIASSATAHGASIF 306

Query:   256 TRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIK 315
             T   V+++ +N  GRV GV L  G +V S +VLS A+P  TF++L P   LP  F+  I 
Sbjct:   307 TEKTVAKVQVNSEGRVQGVVLQGGEEVRSRVVLSCASPQVTFLELTPQEWLPGAFVKRIS 366

Query:   316 HSDYSSGTTKINLAVDKLPQFQCCKLSHPD-PGPQHVGTIHIGSESMEEIHSACQEAVNG 374
               D  S  TKIN+AVD+LP FQ    +  D P   H  +IH+  E    +H A ++A  G
Sbjct:   367 QLDTQSPVTKINVAVDRLPNFQAAPNAPGDQPQAHHQCSIHLNCEDTLLLHQAFEDAKGG 426

Query:   375 LPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSL 434
             LPS+RP+IE+ IPS LD T++P G HV++LF QYTPY  + G   D   ++++A++ F  
Sbjct:   427 LPSQRPMIELCIPSSLDPTLAPTGCHVVSLFTQYTPYTLAGGKVWDEQKKNTYADKVFDC 486

Query:   435 IDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPL 494
             I+ YAPGF  S++G D+LTP DLER  GL GGNIFHGAM LD L+  RPV   S+YR P+
Sbjct:   487 IEAYAPGFKRSVLGRDILTPQDLERIFGLPGGNIFHGAMSLDQLYFARPVPQHSDYRCPV 546

Query:   495 QGLYMCGSGTHPGGGVMGAPGRNAAGIVLQDLK 527
             QGLY+CGSG HPGGGVMGA GRNAA IV +DLK
Sbjct:   547 QGLYLCGSGAHPGGGVMGAAGRNAAHIVFRDLK 579

GO:0016491 "oxidoreductase activity" evidence=IEA

MGI|MGI:1921830 Pyroxd2 "pyridine nucleotide-disulphide oxidoreductase domain 2" [Mus musculus (taxid:10090)]

 Score = 1019 (363.8 bits), Expect = 3.8e-129, Sum P(2) = 3.8e-129
 Identities = 204/422 (48%), Positives = 280/422 (66%)

Query:   108 EDQLDKFSQFVDLLFDSSPPELLQGSSSYSH-QFKNKIRNSAFWAHCLRRAISLGQKDLV 166
             E+ + +    +D L D++P +    ++++ H     ++   +     L+   +LG + L 
Sbjct:   162 EEFMKRLVLAIDPLLDAAPVD----TTAFHHGSLLQRLGALSTLKPLLKAGRTLGAQ-LP 216

Query:   167 EFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNP 226
             ++ ++L +P SKVL++WFE++ LKATLATDAVIG M+S HTPGSGYVLLHHVMG  +G  
Sbjct:   217 QYCEVLTAPISKVLDQWFESEPLKATLATDAVIGAMTSPHTPGSGYVLLHHVMGSLEGTQ 276

Query:   227 GIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSI 286
             G WSYV+GGMG++S AI S+A   GA I T   V+++ +N  GRV GV L DG +V S +
Sbjct:   277 GAWSYVQGGMGALSDAIASSAATRGASIFTEKTVAKVQVNSEGRVQGVTLQDGEEVRSRV 336

Query:   287 VLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPD- 345
             VLS A+P  TF++L P   LP  F+  I   D  S  TKIN+AVD+LP FQ    +  D 
Sbjct:   337 VLSCASPQVTFLELTPQEWLPGAFVKRISQLDTQSPVTKINVAVDRLPNFQAAPNAPGDQ 396

Query:   346 PGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLF 405
             P   H  +IH+  E    +H A ++A  GLPS++P+IE+ IPS LD T++PPG HV++LF
Sbjct:   397 PQGHHQCSIHLNCEDTLLLHQAFEDAKGGLPSQKPMIELCIPSSLDPTLAPPGCHVVSLF 456

Query:   406 IQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTG 465
              QYTPY  + G   +   ++++A++ F  I+ YAPGF  S++  D+LTPPDLER   L G
Sbjct:   457 TQYTPYTLAGGKVWNEQEKNTYADKVFDCIEAYAPGFKRSVLARDILTPPDLERIFRLPG 516

Query:   466 GNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGAPGRNAAGIVLQD 525
             GNIFHGAM LD L+  RPV   S+YR P+QGLY+CGSG HPGGGVMGA GRNAA +V +D
Sbjct:   517 GNIFHGAMSLDQLYFARPVPQHSDYRCPVQGLYLCGSGAHPGGGVMGAAGRNAAHVVFRD 576

Query:   526 LK 527
             LK
Sbjct:   577 LK 578

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

ZFIN|ZDB-GENE-050506-147 pyroxd2 "pyridine nucleotide-disulphide oxidoreductase domain 2" [Danio rerio (taxid:7955)]

 Score = 1023 (365.2 bits), Expect = 3.8e-127, Sum P(2) = 3.8e-127
 Identities = 215/458 (46%), Positives = 291/458 (63%)

Query:    79 PSLIKCGTRIGETWNEV--VEAKSIIVYAIFEDQLDKFSQFVDLLFDSSP---PELLQGS 133
             P  +  G+ +  T  E+     K   VY  F   L+  +  +  L D+ P   P L QGS
Sbjct:   122 PRSLLLGSDLTNTRQEIGKFSEKDAKVYPDFLRYLETLACAIHPLLDAPPVDIPGLTQGS 181

Query:   134 SSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATL 193
              +        ++        ++  + LG K++ +F +L+ +PA KVLN+WFE++ L ATL
Sbjct:   182 LTKRLSALRSLKP------LVKSGLKLG-KNIPDFYELVTAPAMKVLNRWFESEPLIATL 234

Query:   194 ATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAH 253
             ATD+VIG  +S + PGSGYVLLHHVMGE +   G W YVEGGMG V  +I  +AR  GA 
Sbjct:   235 ATDSVIGANTSPNNPGSGYVLLHHVMGELEKEKGSWGYVEGGMGGVPQSIARSARSLGAD 294

Query:   254 IVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILS 313
             I T  +V Q++I   G   GV L DG +VHS +VLSNATP+ TF  L P + LP+ FI +
Sbjct:   295 IFTNTDVEQVLIGPDGSAKGVVLTDGTEVHSKVVLSNATPHVTFKRLTPQDALPEAFITA 354

Query:   314 IKHSDYSSGTTKINLAVDKLPQFQCCKL-SHPDPGPQHVGTIHIGSESMEEIHSACQEAV 372
             +   DY+S  TKIN+AVDKLP F      +    GP H  +IH+  ES+E +  A  E  
Sbjct:   355 VDQIDYTSPVTKINVAVDKLPDFLAAPNGADGKAGPHHQCSIHLNCESVEVLEDAYWEGQ 414

Query:   373 NGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDG--SWMDPAYRDSFANR 430
             +G PS RP+IEMTIPSVLD T++PPG HV++LFIQ+TPY   +G  +W D   ++ F + 
Sbjct:   415 HGRPSSRPMIEMTIPSVLDPTLAPPGCHVVSLFIQFTPYL-LEGRRAWTDED-KERFGDT 472

Query:   431 CFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNY 490
              F  ++ YAPGF +SI+G D+LTP DLER  GLTGGNIFHG+M LD L+L RP+   ++Y
Sbjct:   473 VFDWVERYAPGFKASIVGKDILTPADLERVFGLTGGNIFHGSMSLDQLYLARPLPSIADY 532

Query:   491 RTPLQGLYMCGSGTHPGGGVMGAPGRNAAGIVLQDLKK 528
             R+P++GLY+CGSG+HPGGGVMGA G ++A  VL D K+
Sbjct:   533 RSPVKGLYLCGSGSHPGGGVMGAAGWSSALRVLADFKR 570

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

WB|WBGene00018146 F37C4.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 999 (356.7 bits), Expect = 1.0e-126, Sum P(2) = 1.0e-126
 Identities = 188/361 (52%), Positives = 249/361 (68%)

Query:   160 LGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVM 219
             LG ++ V+F +L+ +P SK++NKWFE+DVLKATL TD VIG  +S   PG+GYVLLHHV+
Sbjct:   179 LGLRNAVDFYELMTAPISKIMNKWFESDVLKATLGTDGVIGLAASPMDPGTGYVLLHHVI 238

Query:   220 GETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG 279
             G  D + G W YV GGMG+VS AI   A+  GA I T  +V ++++ D     GV+L++G
Sbjct:   239 GGLDEHKGAWGYVYGGMGAVSNAIAECAKSHGAEIYTEQDVQEVLL-DGNVAKGVRLSNG 297

Query:   280 AQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCC 339
              ++HS IV+SNATP+ TF  LV    LP++F  +I   DY+S  TKIN+AV +LP F   
Sbjct:   298 KELHSKIVMSNATPHVTFNHLVKKESLPEEFHRNINQIDYTSPVTKINVAVKELPNFLAK 357

Query:   340 KLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGN 399
                  +P P H  TIH+  E+M+ +H A  +  NG  SRRP+IEMTIPS +D+TI    +
Sbjct:   358 PNQGSEPMPHHQTTIHMNCENMQVVHDAVMDYKNGRYSRRPVIEMTIPSSVDRTIVDSAD 417

Query:   400 -HVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLE 458
              HV+ LF QYTP+ P DG W +   +  +A   FS ID YAP FSSS+IGYD+LTPPD++
Sbjct:   418 GHVVLLFTQYTPFSPKDGEWTEEK-KTEYAKHVFSEIDAYAPNFSSSVIGYDILTPPDIQ 476

Query:   459 REIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGAPGRNA 518
                G+TGGNIFHG+M LD L++ RP+  WSNY TP++ LY+CGSG HPGGGV GAPGR +
Sbjct:   477 NTFGITGGNIFHGSMSLDQLYVSRPISKWSNYSTPIESLYLCGSGAHPGGGVTGAPGRLS 536

Query:   519 A 519
             A
Sbjct:   537 A 537

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|O07794 Rv3829c "PROBABLE DEHYDROGENASE" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 135/534 (25%), Positives = 236/534 (44%)

Query:    18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLL 77
             +DA+VIG GHNGLTAA  L RAGL  A L+ +   GG A T EL  G++F     +Q   
Sbjct:     4 YDAIVIGAGHNGLTAAVLLQRAGLRTACLDAKRYAGGMASTVELFDGYRFEIAGSVQF-- 61

Query:    78 RPSLIKCGTRIG-ETWNEV-VEAKSIIVYAIFEDQLDKFS---QFVDLLFDSSPPELLQG 132
              P+     + +G ++   V +E  S+ +  + +D + +F+   + +  L      + + G
Sbjct:    62 -PTSSAVSSELGLDSLPTVDLEVMSVALRGVGDDPVVQFTDPTKMLTHLHRVHGADAVTG 120

Query:   133 SSSYSHQFKNKIRN-SAFWAHCLRR------AISLGQKDLVEFVDLLLSPASKVLNKWF- 184
              +      +   R    F A  L +      A +  + +     D+L    + VL++ F 
Sbjct:   121 MAGLLAWSQAPTRALGRFEAGTLPKSFDEMYACATNEFERSAIDDMLFGSVTDVLDRHFP 180

Query:   185 ---ETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSM 241
                +   L+ ++   AV        TPGS   L    +G  +G+   W  + GG+G+++ 
Sbjct:   181 DREKHGALRGSMTVLAVNTLYRGPATPGSAAALAFG-LGVPEGDFVRWKKLRGGIGALTT 239

Query:   242 AIGSAAREAGAHIVTRAEVSQLMINDS---GRVNGVQLADGAQVHSSIVLSNATPYKTFM 298
              +       G  +  R++V+++++++S    RV GV+ A G  + S IV+S   P  T  
Sbjct:   240 HLSQLLERTGGEVRLRSKVTEIVVDNSRSSARVRGVRTAAGDTLTSPIVVSAIAPDVTIN 299

Query:   299 DLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGS 358
             +L+   +LP +        D+     +++ A+ + P F     +  DP  Q    I    
Sbjct:   300 ELIDPAVLPSEIRDRYLRIDHRGSYLQMHFALAQPPAFAAPYQALNDPSMQASMGIFCTP 359

Query:   359 ESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSW 418
             E +++    C+  +  +P+  P + + IPS+ D +++P G    + F  + P +      
Sbjct:   360 EQVQQQWEDCRRGI--VPAD-PTVVLQIPSLHDPSLAPAGKQAASAFAMWFPIEGGSKYG 416

Query:   419 MDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSL 478
                  +          I   AP F  SI+ Y   TP  +    G  GG+  H  +  D +
Sbjct:   417 GYGRAKVEMGQNVIDKITRLAPNFKGSILRYTTFTPKHMGVMFGAPGGDYCHALLHSDQI 476

Query:   479 FLMRP-VKGWSNYRTPLQGLYMCGSGTHPGGGVMGAPGRNAAGIVLQDLKKSLN 531
                RP  KG+     P+ GLY+  +G H G G+   PG NAA   L D +++ N
Sbjct:   477 GPNRPGPKGFIGQPIPIAGLYLGSAGCHGGPGITFIPGYNAARQALAD-RRAAN 529

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2033055 CRTISO "carotenoid isomerase" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
 Identities = 35/135 (25%), Positives = 72/135 (53%)

Query:   176 ASKVLNKWFETDVLKATLATDA-VIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEG 234
             A  +  K+ +   L + +  +  ++ T++++ TP     +++  M   D + G  +Y  G
Sbjct:   249 AGAIARKYIKDPQLLSFIDAECFIVSTVNALQTP-----MINASMVLCDRHYGGINYPVG 303

Query:   235 GMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPY 294
             G+G ++ ++     + G+ I  +A V  +++ D G+  GV+LADG +  +  ++SNAT +
Sbjct:   304 GVGGIAKSLAEGLVDQGSEIQYKANVKSIIL-DHGKAVGVRLADGREFFAKTIISNATRW 362

Query:   295 KTFMDLVPGNILPDD 309
              TF  L+ G  LP +
Sbjct:   363 DTFGKLLKGEKLPKE 377

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IBA;TAS

GO:0016117 "carotenoid biosynthetic process" evidence=IEA;IGI;TAS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009662 "etioplast organization" evidence=IMP

GO:0046608 "carotenoid isomerase activity" evidence=IGI;IMP

UNIPROTKB|P21685 crtI "Phytoene desaturase (lycopene-forming)" [Pantoea ananatis (taxid:553)]

 Score = 141 (54.7 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
 Identities = 44/151 (29%), Positives = 72/151 (47%)

Query:   387 PSVLDKTISPPG--NHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDE-YAPGFS 443
             P V D +++P G  ++ +   + +      D +   P  RD    R F+ +++ Y PG  
Sbjct:   355 PCVTDSSLAPEGCGSYYVLAPVPHLGTANLDWTVEGPKLRD----RIFAYLEQHYMPGLR 410

Query:   444 SSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPV---KGW---SNYRTPLQGL 497
             S ++ + M TP D   ++     N +HG     S F + PV     W    N    +  L
Sbjct:   411 SQLVTHRMFTPFDFRDQL-----NAYHG-----SAFSVEPVLTQSAWFRPHNRDKTITNL 460

Query:   498 YMCGSGTHPGGGVMGAPG--RNAAGIVLQDL 526
             Y+ G+GTHPG G+ G  G  +  AG++L+DL
Sbjct:   461 YLVGAGTHPGAGIPGVIGSAKATAGLMLEDL 491

GO:0016120 "carotene biosynthetic process" evidence=IDA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IDA

GO:0071949 "FAD binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8N2H3	PYRD2_HUMAN	1, ., -, ., -, ., -	0.4719	0.9717	0.8881	yes	no
Q68FT3	PYRD2_RAT	1, ., -, ., -, ., -	0.4691	0.9774	0.8932	yes	no
Q3U4I7	PYRD2_MOUSE	1, ., -, ., -, ., -	0.4654	0.9792	0.8965	yes	no
Q5RAP5	PYRD2_PONAB	1, ., -, ., -, ., -	0.4657	0.9736	0.8898	yes	no
Q3MHH6	PYRD2_BOVIN	1, ., -, ., -, ., -	0.4638	0.9774	0.8932	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024928001 SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (565 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	531
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	2e-94
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	1e-16
TIGR02730	493	TIGR02730, carot_isom, carotene isomerase	2e-15
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	5e-11
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	3e-08
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	4e-08
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	5e-08
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	1e-07
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	1e-07
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	2e-07
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	4e-07
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	5e-07
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	6e-07
COG1635	262	COG1635, THI4, Ribulose 1,5-bisphosphate synthetas	1e-06
TIGR00292	254	TIGR00292, TIGR00292, thiazole biosynthesis enzyme	1e-06
COG0578	532	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase	3e-06
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	3e-06
pfam01946	229	pfam01946, Thi4, Thi4 family	3e-06
TIGR02733	492	TIGR02733, desat_CrtD, C-3',4' desaturase CrtD	5e-06
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	7e-06
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	8e-06
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	9e-06
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	9e-06
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	1e-05
TIGR01292	299	TIGR01292, TRX_reduct, thioredoxin-disulfide reduc	1e-05
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	1e-05
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	1e-05
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	1e-05
PLN02976	1713	PLN02976, PLN02976, amine oxidase	3e-05
COG1053	562	COG1053, SdhA, Succinate dehydrogenase/fumarate re	4e-05
PRK10015	429	PRK10015, PRK10015, oxidoreductase; Provisional	7e-05
PRK07057	591	PRK07057, sdhA, succinate dehydrogenase flavoprote	8e-05
COG1148	622	COG1148, HdrA, Heterodisulfide reductase, subunit	9e-05
PRK06183	500	PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr	1e-04
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	1e-04
pfam12831	415	pfam12831, FAD_oxidored, FAD dependent oxidoreduct	1e-04
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	2e-04
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	3e-04
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	4e-04
PRK08163	396	PRK08163, PRK08163, salicylate hydroxylase; Provis	4e-04
TIGR02730	493	TIGR02730, carot_isom, carotene isomerase	5e-04
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	5e-04
PRK06134	581	PRK06134, PRK06134, putative FAD-binding dehydroge	5e-04
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	6e-04
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	6e-04
PRK07494	388	PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl h	6e-04
PRK10157	428	PRK10157, PRK10157, putative oxidoreductase FixC;	6e-04
TIGR03997	645	TIGR03997, mycofact_OYE_2, mycofactocin system Fad	6e-04
PRK05329	422	PRK05329, PRK05329, anaerobic glycerol-3-phosphate	7e-04
TIGR03143	555	TIGR03143, AhpF_homolog, putative alkyl hydroperox	7e-04
PRK15317	517	PRK15317, PRK15317, alkyl hydroperoxide reductase	8e-04
pfam13738	202	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp	8e-04
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	8e-04
TIGR00275	400	TIGR00275, TIGR00275, flavoprotein, HI0933 family	8e-04
PRK12834	549	PRK12834, PRK12834, putative FAD-binding dehydroge	9e-04
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	0.001
PRK06753	373	PRK06753, PRK06753, hypothetical protein; Provisio	0.001
PRK12839	572	PRK12839, PRK12839, hypothetical protein; Provisio	0.001
PRK09126	392	PRK09126, PRK09126, hypothetical protein; Provisio	0.001
TIGR02023	388	TIGR02023, BchP-ChlP, geranylgeranyl reductase	0.002
COG0445	621	COG0445, GidA, Flavin-dependent tRNA uridine 5-car	0.002
PRK12831	464	PRK12831, PRK12831, putative oxidoreductase; Provi	0.002
PRK07608	388	PRK07608, PRK07608, ubiquinone biosynthesis hydrox	0.002
PRK08274	466	PRK08274, PRK08274, tricarballylate dehydrogenase;	0.002
PRK05192	618	PRK05192, PRK05192, tRNA uridine 5-carboxymethylam	0.002
TIGR01317	485	TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH	0.002
PRK12843	578	PRK12843, PRK12843, putative FAD-binding dehydroge	0.003
PRK12775	1006	PRK12775, PRK12775, putative trifunctional 2-polyp	0.003
pfam01134	391	pfam01134, GIDA, Glucose inhibited division protei	0.003
TIGR03364	365	TIGR03364, HpnW_proposed, FAD dependent oxidoreduc	0.004
pfam01494	349	pfam01494, FAD_binding_3, FAD binding domain	0.004

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  295 bits (757), Expect = 2e-94
 Identities = 156/535 (29%), Positives = 230/535 (42%), Gaps = 67/535 (12%)

Query: 15  EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQ 74
              +D +VIG G NGL AAA LARAGL V VLE+   +GG A T EL  GF+F       
Sbjct: 1   MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFEL-DGFRFDTGPSWY 59

Query: 75  SLLRPS----LIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELL 130
            +  P      +      G              Y +F    D    + DL    +  ELL
Sbjct: 60  LMPDPGPLFRELGNLDADGLDL-----LPPDPAYRVFLPDGDAIDVYTDL---EATAELL 111

Query: 131 QGSSSYSHQFKNKIRNSAF--WAHCLR----------RAISLGQKDLVEFVDLLLSPASK 178
           +       +   +        +                 +    + L+  +   L+ A  
Sbjct: 112 ESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRLLGFSLTSALD 171

Query: 179 VLNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGS 238
                F +++L+A LA  AV G      +      LL   +G + G      Y  GGMG+
Sbjct: 172 FFRGRFGSELLRALLAYSAVYGGAP--PSTPPALYLLLSHLGLSGG----VFYPRGGMGA 225

Query: 239 VSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFM 298
           +  A+   ARE G  I T AEVSQ+++ + G+  GV+ +DG  + +  V+SNA P     
Sbjct: 226 LVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADPA---- 280

Query: 299 DLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGS 358
                  L    +   +   Y     K   A+      +            H  TI +G 
Sbjct: 281 -------LLARLLGEARRPRYRGSYLKSLSALSLYLGLKGD-----LLPLAHHTTILLG- 327

Query: 359 ESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSW 418
           ++ E+I    +EA +    R P + ++IPS+ D +++P G H  + F Q  P  PS G +
Sbjct: 328 DTREQI----EEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKH--STFAQLVPV-PSLGDY 380

Query: 419 MD--PAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLD 476
            +   +  D+        ++E APG    I+  ++LTP DLER +GL GG+IF GA  LD
Sbjct: 381 DELKESLADAID-----ALEELAPGLRDRIVAREVLTPLDLERYLGLPGGDIFGGAHTLD 435

Query: 477 SLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGAPGRNAAGIVLQDLKKSLN 531
            L   RP        TP++GLY+ G+ THPGGGV G PG  AA  +L DL +   
Sbjct: 436 QLGPFRPPPK----STPIKGLYLVGASTHPGGGVPGVPGSAAAVALLIDLDRGRG 486

Length = 487

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score = 81.9 bits (203), Expect = 1e-16
 Identities = 89/367 (24%), Positives = 143/367 (38%), Gaps = 60/367 (16%)

Query: 180 LNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSV 239
           + ++F  + L+   +  A+    +   TP S Y L+       +   G+W +  GG G++
Sbjct: 168 VARFFSDERLRQAFSFHALFLGGNPFRTP-SIYALISA----LEREWGVW-FPRGGTGAL 221

Query: 240 SMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMD 299
             A+   A + G  +   AEV ++   + GR   V LADG ++ +  V+SNA  + T+  
Sbjct: 222 VAAMAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVSNADLHHTYRR 280

Query: 300 LVP---GNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHI 356
           L+P       P   +   + S                          P     H  T+  
Sbjct: 281 LLPNHPRRRYPAARLSRKRPS---------PSLFVLYFGLLGVDGHWPQL-AHH--TLCF 328

Query: 357 GS---ESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYK- 412
           G    E  +EI         G  +  P + +  P+V D +++PPG    NL++   P   
Sbjct: 329 GPRYKELFDEIFRK------GRLAEDPSLYLHRPTVTDPSLAPPGCE--NLYV-LAPVPH 379

Query: 413 --PSDGSWMD--PAYRDSFANRCFSLIDEYA-PGFSSSIIGYDMLTPPDLEREIGLTGGN 467
              +D  W    P YRD    R  + ++E A PG    I+     TP D          N
Sbjct: 380 LGTADVDWSVEGPRYRD----RILAYLEERAIPGLRDRIVVERTFTPADFRDRY-----N 430

Query: 468 IFHGAM-GLDSLFL----MRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMG--APGRNAAG 520
            + G+   L+         RP     N    +  LY+ G+GTHPG GV G     +  A 
Sbjct: 431 AWLGSAFSLEHTLTQSAWFRP----HNRDRKIDNLYLVGAGTHPGAGVPGVLGSAKATAK 486

Query: 521 IVLQDLK 527
           ++L DL 
Sbjct: 487 LMLGDLA 493

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase

 Score = 78.7 bits (194), Expect = 2e-15
 Identities = 80/304 (26%), Positives = 134/304 (44%), Gaps = 52/304 (17%)

Query: 219 MGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD 278
           M  +D + G  +Y +GG+G ++ ++     + G  I  RA V+++ I ++G+  GV+LAD
Sbjct: 211 MVFSDRHYGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKI-ILENGKAVGVKLAD 269

Query: 279 GAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQC 338
           G ++++  ++SNAT + TF  L+    LP                        K P F  
Sbjct: 270 GEKIYAKRIVSNATRWDTFGKLLKAENLP-------------KKEKNWQRNYVKSPSF-- 314

Query: 339 CKLSHPDPGPQHVGTIHIGSESM-----EEIHSACQEAVNGLPSRRPIIEMTIPSVLDKT 393
             LS           +H+G ++       E H    E    L   +  I ++IP++LD +
Sbjct: 315 --LS-----------LHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPS 361

Query: 394 ISPPGNHVINLFIQYTPYKPSDGSWMDP----AYRDSFANRCFSLIDEYAPGFSSSIIGY 449
           ++P G+H+I+ F   TP    D   + P    A +++ A R    +++  PG  S+I   
Sbjct: 362 LAPEGHHIIHTF---TPSSMEDWQGLSPKDYEAKKEADAERIIDRLEKIFPGLDSAIDYK 418

Query: 450 DMLTPPDLEREIGLTGGNIFHG---AMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHP 506
           ++ TP    R +G   G   +G      L  L  M P       RT + GLY  G    P
Sbjct: 419 EVGTPRTHRRFLGRDSGT--YGPIPRRTLPGLLPM-PFN-----RTAIPGLYCVGDSCFP 470

Query: 507 GGGV 510
           G G+
Sbjct: 471 GQGL 474

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 493

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 57.9 bits (141), Expect = 5e-11
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 22 VIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKF 67
          ++G G +GL AA  LA+ G  V VLE+R  IGG A +E   PG++ 
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRIGGNAYSER-DPGYRH 45

Length = 66

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 21/37 (56%), Positives = 25/37 (67%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGA 55
          D +VIGGG  GL+ A  LAR GLSV +LER  +  GA
Sbjct: 1  DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLASGA 37

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 55.6 bits (135), Expect = 4e-08
 Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 22  VIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFK 66
           VIG G  GLTAA  LAR G  V + E R   GG  +    IP F+
Sbjct: 145 VIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG--LLRYGIPEFR 187

Length = 457

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 55.8 bits (135), Expect = 5e-08
 Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 12  ALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFS 68
           A    +    VIG G  GL AA +LARAG  V V ER    GG  V + +IP F+  
Sbjct: 534 AGIGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGG--VVKNIIPQFRIP 588

Length = 1019

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 9/57 (15%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG-----GAAVT----EELIPGFK 66
          D +++G G  G +AA  LA+AGL V VLE+    G     G  ++    EELIP F 
Sbjct: 5  DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFD 61

Length = 396

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 21/36 (58%), Positives = 26/36 (72%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
          D  ++G G +GLTAA YLA+AGL VAV ER+   GG
Sbjct: 27 DVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG 62

Length = 257

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 54.0 bits (130), Expect = 2e-07
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 11  SALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFS 68
              K       VIG G  GL+A  +LARAG  V V E++   GG  V + +IP F+ S
Sbjct: 531 PQGKSSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGG--VVKNIIPEFRIS 586

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 65/316 (20%), Positives = 99/316 (31%), Gaps = 35/316 (11%)

Query: 29  GLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSR--------CSYLQSLLRPS 80
           GL AA  L RAG  V VLE R  +GG   T     GF               L +LL   
Sbjct: 3   GLAAARELLRAGFDVTVLEARDRVGGRIRTVRF-DGFLIELGAQWFHGAYPNLLNLLLEL 61

Query: 81  LIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQF 140
            ++ G         +          +            DL  D  PP  L   S    + 
Sbjct: 62  GLELGL-------LLFPFPGDPFVRLKYRGGPYP----DLPGDLPPPLFLLLRSLLELEL 110

Query: 141 KNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIG 200
             +       A  L  A+ L   +L+E    LLS +  +    F    L    +  A   
Sbjct: 111 SLEEPIRR--ALLLLVALLLLAPELLE--LDLLSFSDLLSAAGFLELFLLLFRSLLAGAL 166

Query: 201 TMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEG---GMGSVSMAIGSAAREAGAHIVTR 257
               +       +L   +    DG  G+     G    +G +   I +A    G  +   
Sbjct: 167 GFLPLELSARLALLSLRLFDLEDG--GVVFPGGGFTLPLGGLPQLIAAALGLLGGRVRLN 224

Query: 258 AEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK-TFMDLVPGNILPDDFILSIKH 316
             V    I  SG    V   DG  + +  V+          +  +P   LP     +I++
Sbjct: 225 TRVRS--ITKSGDGVTVTTVDGRTIEADAVIVTVPLGVLKRILFLPP--LPAAKQEAIRN 280

Query: 317 SDYSSGTTKINLAVDK 332
             + S  +K+ L  + 
Sbjct: 281 LGFGSV-SKVFLEFET 295

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 51.4 bits (123), Expect = 5e-07
 Identities = 22/42 (52%), Positives = 25/42 (59%)

Query: 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAA 56
            K D ++IGGG  GL+AA YLA  G  V VLE     GGAA
Sbjct: 2  SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAA 43

Length = 387

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 20/52 (38%), Positives = 27/52 (51%)

Query: 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFK 66
           K +D ++IGGG  GLTAA Y ARAGL V ++      GG       +  + 
Sbjct: 1  MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYP 52

Length = 305

>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 20/36 (55%), Positives = 27/36 (75%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
          D +++G G +GLTAA YLA+AGL VA+ ER+   GG
Sbjct: 32 DVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG 67

Length = 262

>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
          D +++G G +GLTAA YLA+ GL V VLER    GG
Sbjct: 23 DVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGG 58

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine. This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 254

>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 11 SALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR 49
          + L+ +++D +VIGGG  G   A   A  GL VA++E+ 
Sbjct: 6  TRLRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKG 44

Length = 532

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 49.4 bits (119), Expect = 3e-06
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57
          +++DA+VIG G  G   AA  A  G+ VA++ER  + GG  V
Sbjct: 4  QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLL-GGTCV 44

Length = 463

>gnl|CDD|145231 pfam01946, Thi4, Thi4 family

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 20/38 (52%), Positives = 27/38 (71%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAA 56
          D +++G G +GLTAA YLA+ GL VA++ER    GG A
Sbjct: 19 DVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGGGA 56

This family includes a putative thiamine biosynthetic enzyme. Length = 229

>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 20/37 (54%), Positives = 23/37 (62%)

Query: 22 VIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT 58
          VIG G  GLTAAA LA+ G  V +LE+    GG A T
Sbjct: 6  VIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGT 42

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 492

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 48.2 bits (116), Expect = 7e-06
 Identities = 17/41 (41%), Positives = 22/41 (53%)

Query: 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57
           +D +VIG G  G  AA   A+ G  VAV+ER   +GG   
Sbjct: 5  DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCT 45

Length = 461

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 48.2 bits (116), Expect = 8e-06
 Identities = 24/49 (48%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 22  VIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL----IPGFK 66
           V+G G  GL AA  LARAG  V V ER   IGG      L    IP FK
Sbjct: 148 VVGSGPAGLAAADQLARAGHKVTVFERADRIGG------LLRYGIPDFK 190

Length = 471

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 47.8 bits (114), Expect = 9e-06
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50
          D  ++G G  GL  A  LARAGL V +LER  
Sbjct: 4  DVAIVGAGPAGLALALALARAGLDVTLLERAP 35

Length = 387

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 48.0 bits (115), Expect = 9e-06
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 14 KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIP 63
            K++D +VIG G  G  AA   A+ GL VA++E+   +GG  +    IP
Sbjct: 1  MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIP 50

Length = 454

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 20 ALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKF 67
          A+VIG G  GL  A  LA AG+ V V+E+R   GG A   E   GF+F
Sbjct: 1  AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLE-DDGFRF 47

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL--IPGFK 66
          D ++IG G  GLTAA Y ARA L   ++E     G    T E+   PGF 
Sbjct: 1  DVIIIGAGPAGLTAAIYAARANLKPLLIEGGEPGGQLTTTTEVENYPGFP 50

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 20/39 (51%), Positives = 23/39 (58%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57
          D +VIG G  GL AA   A AGL VAV+E+    GGA  
Sbjct: 1  DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATA 39

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 23/108 (21%)

Query: 18  WDALVIGGGHNGLTAAAYLARAGLSVAVLER----RHVIGGAAVT----EELIPGFKFSR 69
           +D +V+G G  G +AA  LA  GL V +LE+    R+   G A++    EEL    +   
Sbjct: 1   YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRALEELDLPGELI- 59

Query: 70  CSYLQSLLRPSLIKCGTRIGETWN-EVVEAKSI--IVYAIFEDQLDKF 114
                +L+R +          + N + VE      + Y I  D  D+ 
Sbjct: 60  ----VNLVRGARF-------FSPNGDSVEIPIETELAYVIDRDAFDEQ 96

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEE 60
            ++IG G  GLTAA  L + G  V VLE   V+GG + T  
Sbjct: 6  SVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVT 47

Length = 479

>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 21/39 (53%), Positives = 25/39 (64%)

Query: 21  LVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTE 59
           +V+G G  GLTAA +L R G SV VLE R  IGG   T+
Sbjct: 697 IVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTD 735

Length = 1713

>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 19/41 (46%), Positives = 24/41 (58%)

Query: 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57
          ++D +VIGGG  GL AA   A AGL VA+L +     G  V
Sbjct: 6  EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTV 46

Length = 562

>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional

 Score = 45.0 bits (106), Expect = 7e-05
 Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 9/62 (14%)

Query: 13 LKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLER------RHVIGG---AAVTEELIP 63
          + + K+DA+V+G G  G  AA  +ARAGL V V+ER      +++ GG   A   E +IP
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP 60

Query: 64 GF 65
          GF
Sbjct: 61 GF 62

Length = 429

>gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed

 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 18/41 (43%), Positives = 30/41 (73%)

Query: 8  STTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLER 48
          +  ++L  +K+D +++G G +G+ A+  LARAGLSVAVL +
Sbjct: 3  AIKTSLPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSK 43

Length = 591

>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

 Score = 44.8 bits (106), Expect = 9e-05
 Identities = 18/36 (50%), Positives = 22/36 (61%)

Query: 19  DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
             LVIGGG  G+TAA  LA  G  V ++E+   IGG
Sbjct: 126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG 161

Length = 622

>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

 Score = 44.5 bits (106), Expect = 1e-04
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERR 49
          D +++G G  GLT A  L + G+ V VLER 
Sbjct: 12 DVVIVGAGPVGLTLANLLGQYGVRVLVLERW 42

Length = 500

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 22 VIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAA 56
          ++GGG  GL AA  LA+ G  V V E    +GG A
Sbjct: 4  IVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLA 38

Length = 434

>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTE 59
          D +V+GGG  G+ AA   AR G  V ++ERR  +GG A + 
Sbjct: 1  DVVVVGGGPAGVAAAIAAARLGAKVLLVERRGWLGGMATSG 41

This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 18/30 (60%), Positives = 22/30 (73%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLER 48
          D ++IGGG  GL AA  LAR GL VA++ER
Sbjct: 1  DVVIIGGGPAGLAAAIRLARLGLKVALIER 30

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 11  SALKEKK-WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
           SAL++   +D LV+GGG  G  AA Y AR GL  A++  R  IGG
Sbjct: 205 SALEQLDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGG 247

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 18/33 (54%), Positives = 20/33 (60%)

Query: 22  VIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
           VIG G  GL AA  L+RAG  V V ER  + GG
Sbjct: 128 VIGAGPAGLAAADDLSRAGHDVTVFERVALDGG 160

Length = 457

>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 20 ALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG--GAAV 57
           L++GGG  GL AA  LAR G+ V +LE+   IG  GA +
Sbjct: 7  VLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGI 46

Length = 396

>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 20/39 (51%), Positives = 24/39 (61%)

Query: 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAA 56
          +DA+VIG G  GL  A  LA  G  V VLER  + GG+A
Sbjct: 1  YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSA 39

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 493

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 42.6 bits (101), Expect = 5e-04
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 16/79 (20%)

Query: 21  LVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL---IPGFKFSRC---SYLQ 74
            VIGGG  GL+AA +L R G +V + E    +GG      +   IP ++  R    + +Q
Sbjct: 141 AVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGM-----MRYGIPAYRLPREVLDAEIQ 195

Query: 75  SLLRPSL---IKCGTRIGE 90
            +L   L   ++ G R+GE
Sbjct: 196 RIL--DLGVEVRLGVRVGE 212

Length = 564

>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 20/49 (40%), Positives = 26/49 (53%)

Query: 7  TSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGA 55
           S  +   + + D LVIG G  GL+AA   A  GL V V+E+  V GG 
Sbjct: 2  PSAAAYPPDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGT 50

Length = 581

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLS-VAVLERRHVIGGA 55
          D  +IG G +GL AA  L +AG+    + E+R  +GG 
Sbjct: 10 DVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGT 47

Length = 443

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 42.2 bits (100), Expect = 6e-04
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIP 63
          +D +VIGGG  G  AA   A+ GL VA++E+ + +GG  +    IP
Sbjct: 2  YDVIVIGGGPGGYVAAIRAAQLGLKVALVEKEY-LGGTCLNVGCIP 46

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 19/39 (48%), Positives = 25/39 (64%)

Query: 11 SALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR 49
          S ++++  D  VIGGG  GL AA  LARAG SVA++   
Sbjct: 1  SLMEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPE 39

Length = 388

>gnl|CDD|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 9/62 (14%)

Query: 13 LKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT---------EELIP 63
          + E  +DA+++G G  G  AA  LAR G  V V+ER +  G   VT         E +IP
Sbjct: 1  MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIP 60

Query: 64 GF 65
          GF
Sbjct: 61 GF 62

Length = 428

>gnl|CDD|234436 TIGR03997, mycofact_OYE_2, mycofactocin system FadH/OYE family oxidoreductase 2

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 21  LVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPS 80
           LV+GGG  GL AAA  AR G  V + ER   +GG       +PG           L+R +
Sbjct: 383 LVVGGGPAGLEAAATAARRGHRVTLFEREDRLGGQVRLAARLPG-----RGEFADLIR-N 436

Query: 81  LIKCGTRIG 89
           L     R G
Sbjct: 437 LASELRRAG 445

The yeast protein called old yellow enzyme and FadH from Escherichia coli (2,4-dienoyl CoA reductase) are enzymes with 4Fe-4S, FMN, and FAD prosthetic groups, and interact with NADPH as well as substrate. Members of this related protein family occur in the vicinity of the putative mycofactocin biosynthesis operon in a number of Actinobacteria such as Frankia sp. and Rhodococcus sp., in Pelotomaculum thermopropionicum SI (Firmicutes), and in Geobacter uraniireducens Rf4 (Deltaproteobacteria). The function of this oxidoreductase is unknown. Length = 645

>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

 Score = 41.8 bits (99), Expect = 7e-04
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query: 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVL 46
           K+D LVIGGG  GLTAA   A AG  VA++
Sbjct: 1  MKFDVLVIGGGLAGLTAALAAAEAGKRVALV 31

Length = 422

>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F subunit

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELI--PG 64
          E+ +D ++IGGG  GL+A  Y  RA L   ++E+    G   +T E++  PG
Sbjct: 2  EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPG 53

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). Length = 555

>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional

 Score = 41.7 bits (99), Expect = 8e-04
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 11  SALKEKK-WDALVIGGGHNGLTAAAYLARAGLSVAVL-ERRHVIGG 54
             L  K  +D LV+GGG  G  AA Y AR G+   ++ ER    GG
Sbjct: 204 EELNAKDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER---FGG 246

Length = 517

>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 21 LVIGGGHNGLTAAAYLARAGL-SVAVLERRHVIGG 54
          LV+G G  G+  A +L   G   V +++R    GG
Sbjct: 1  LVVGAGAAGMAFADHLLDLGDAPVIIVDRGAQPGG 35

Length = 202

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 15/35 (42%), Positives = 18/35 (51%)

Query: 22 VIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAA 56
          + G G  GL AA  LA AG  V + E R  +GG  
Sbjct: 5  IAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKV 39

Length = 485

>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 21 LVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG 53
          ++IGGG  GL AA   AR GLSV +LE+   IG
Sbjct: 1  IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIG 33

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae [Unknown function, Enzymes of unknown specificity]. Length = 400

>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed

 Score = 41.4 bits (98), Expect = 9e-04
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVL--ERRHVIGGAA 56
          D +V+G G  GL AAA LA AG  V +L  E    +GG A
Sbjct: 6  DVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45

Length = 549

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 14  KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL 61
            E   D +V+G G  GL AA   A+ G  V ++E    +GG  +  E+
Sbjct: 133 AEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEV 180

Length = 415

>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 22 VIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52
          +IG G  GLTAAA L   G  V V E+   +
Sbjct: 5  IIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35

Length = 373

>gnl|CDD|237223 PRK12839, PRK12839, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGA 55
          +D +V+G G  GL+AA   A  G  V V+E+    GGA
Sbjct: 9  YDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA 46

Length = 572

>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLER 48
          D +V+G G  GL+ A  LA +GL V ++ER
Sbjct: 5  DIVVVGAGPAGLSFARSLAGSGLKVTLIER 34

Length = 392

>gnl|CDD|233689 TIGR02023, BchP-ChlP, geranylgeranyl reductase

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLER 48
          +D  VIGGG +G TAA  LARAG+   +LER
Sbjct: 1  YDVAVIGGGPSGATAAETLARAGIETILLER 31

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 388

>gnl|CDD|223522 COG0445, GidA, Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

 Score = 40.6 bits (96), Expect = 0.002
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVL 46
          K++D +VIGGGH G+ AA   AR G    +L
Sbjct: 3  KEYDVIVIGGGHAGVEAALAAARMGAKTLLL 33

Length = 621

>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 6/89 (6%)

Query: 22  VIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSL 81
           VIG G  GLT A  LA+ G  V + E  H  GG  V    IP F+  + + ++  +  ++
Sbjct: 145 VIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGG--VLVYGIPEFRLPKETVVKKEIE-NI 201

Query: 82  IKCGTRIGETWNEVVEAKSIIVYAIFEDQ 110
            K G +I ET   VV  K++ +  + E++
Sbjct: 202 KKLGVKI-ET--NVVVGKTVTIDELLEEE 227

Length = 464

>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family protein; Provisional

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERR 49
          K+D +V+GGG  G + A  LA++GL VA+L  R
Sbjct: 5  KFDVVVVGGGLVGASLALALAQSGLRVALLAPR 37

Length = 388

>gnl|CDD|236214 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated

 Score = 40.2 bits (95), Expect = 0.002
 Identities = 16/33 (48%), Positives = 18/33 (54%)

Query: 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLER 48
             D LVIGGG+  L AA     AG SV +LE 
Sbjct: 3  SMVDVLVIGGGNAALCAALAAREAGASVLLLEA 35

Length = 466

>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

 Score = 40.4 bits (96), Expect = 0.002
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVL 46
          +++D +V+GGGH G  AA   AR G    +L
Sbjct: 3  EEYDVIVVGGGHAGCEAALAAARMGAKTLLL 33

Length = 618

>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 8/91 (8%)

Query: 22  VIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQ--SLLRP 79
           V+G G  GL AA  L RAG +V V ER    GG  +    IP  K  +    +   LL  
Sbjct: 148 VVGSGPAGLAAADQLNRAGHTVTVFEREDRCGG--LLMYGIPNMKLDKAIVDRRIDLLSA 205

Query: 80  SLI--KCGTRIGE--TWNEVVEAKSIIVYAI 106
             I     T IG   + +E+ E    +V A 
Sbjct: 206 EGIDFVTNTEIGVDISADELKEQFDAVVLAG 236

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485

>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT 58
          D +VIG G  G++AA + A AGL V ++ER   +GG   T
Sbjct: 18 DVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT 57

Length = 578

>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 22  VIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSR 69
           + G G  GL AAA L + G+ V V E  HV+GG  V +  IP F+  R
Sbjct: 435 ICGSGPAGLAAAADLVKYGVDVTVYEALHVVGG--VLQYGIPSFRLPR 480

Length = 1006

>gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVL 46
          D +VIGGGH G  AA   AR G  V ++
Sbjct: 1  DVIVIGGGHAGCEAALAAARMGAKVLLI 28

Length = 391

>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57
          D +++G G  GL  A   AR GLSV V+ER     GA+V
Sbjct: 2  DLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASV 40

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. Length = 365

>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERR 49
          D L++GGG  GL  A  LARAG+ V ++ER 
Sbjct: 3  DVLIVGGGPAGLMLALLLARAGVRVVLVERH 33

This domain is involved in FAD binding in a number of enzymes. Length = 349

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	531
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	100.0
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	100.0
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	100.0
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	100.0
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	100.0
PLN02612	567	phytoene desaturase	100.0
PRK07233	434	hypothetical protein; Provisional	100.0
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.97
PLN02487	569	zeta-carotene desaturase	99.97
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.97
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.97
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.96
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.96
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.96
PRK07208	479	hypothetical protein; Provisional	99.96
PLN02576	496	protoporphyrinogen oxidase	99.95
PLN02268	435	probable polyamine oxidase	99.94
PLN02676	487	polyamine oxidase	99.94
PLN02568	539	polyamine oxidase	99.94
PLN02529	738	lysine-specific histone demethylase 1	99.93
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.93
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.93
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	99.93
PLN03000	881	amine oxidase	99.93
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.92
PLN02976	1713	amine oxidase	99.91
COG3349	485	Uncharacterized conserved protein [Function unknow	99.91
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.91
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.91
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.85
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.81
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.8
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.74
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.67
COG2081	408	Predicted flavoproteins [General function predicti	99.62
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.61
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.58
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.57
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.55
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.54
COG0579	429	Predicted dehydrogenase [General function predicti	99.5
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.5
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.49
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.49
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.46
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.43
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.42
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.41
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.41
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.39
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.39
PRK06116	450	glutathione reductase; Validated	99.36
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.34
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.34
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.34
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.33
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.31
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.31
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.29
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.28
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.27
PLN02546	558	glutathione reductase	99.27
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.27
PRK10157	428	putative oxidoreductase FixC; Provisional	99.26
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	99.26
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.26
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.26
PRK08274	466	tricarballylate dehydrogenase; Validated	99.25
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.25
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.24
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.24
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.24
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	99.24
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.23
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.23
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.23
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.23
PRK06370	463	mercuric reductase; Validated	99.21
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.2
PLN02507	499	glutathione reductase	99.2
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.19
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.18
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	99.18
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.18
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.18
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.18
PTZ00058	561	glutathione reductase; Provisional	99.17
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.17
PRK10015	429	oxidoreductase; Provisional	99.17
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.17
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.16
PRK07121	492	hypothetical protein; Validated	99.16
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.16
PRK05257	494	malate:quinone oxidoreductase; Validated	99.15
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	99.15
PTZ00052	499	thioredoxin reductase; Provisional	99.15
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.14
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.13
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.13
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.12
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.12
PRK07190	487	hypothetical protein; Provisional	99.12
PRK06847	375	hypothetical protein; Provisional	99.11
PRK14694	468	putative mercuric reductase; Provisional	99.09
PRK06834	488	hypothetical protein; Provisional	99.09
PRK06184	502	hypothetical protein; Provisional	99.08
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.08
PRK14727	479	putative mercuric reductase; Provisional	99.08
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.08
PRK13748	561	putative mercuric reductase; Provisional	99.07
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.07
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.06
PRK07045	388	putative monooxygenase; Reviewed	99.05
PRK08163	396	salicylate hydroxylase; Provisional	99.04
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.04
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.04
TIGR02053	463	MerA mercuric reductase. This model represents the	99.04
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.04
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.03
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.03
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.03
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.03
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.02
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.02
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	99.02
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.01
PLN02661	357	Putative thiazole synthesis	99.01
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.01
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.01
KOG2853	509	consensus Possible oxidoreductase [General functio	99.01
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	99.01
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.0
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.0
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.0
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.99
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.99
PLN02697	529	lycopene epsilon cyclase	98.99
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.99
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.99
PRK07588	391	hypothetical protein; Provisional	98.98
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.98
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.98
PRK07804	541	L-aspartate oxidase; Provisional	98.98
PRK12839	572	hypothetical protein; Provisional	98.98
PRK06175	433	L-aspartate oxidase; Provisional	98.98
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.97
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.97
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.97
PRK08013	400	oxidoreductase; Provisional	98.97
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.96
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.96
PLN02463	447	lycopene beta cyclase	98.96
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.96
PRK08401	466	L-aspartate oxidase; Provisional	98.96
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.95
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.95
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.95
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	98.95
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.95
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.94
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.94
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.94
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.93
PRK09126	392	hypothetical protein; Provisional	98.93
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.93
PRK08244	493	hypothetical protein; Provisional	98.93
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.92
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.92
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.92
PRK06185	407	hypothetical protein; Provisional	98.91
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.91
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.91
PRK07395	553	L-aspartate oxidase; Provisional	98.9
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.9
PRK08275	554	putative oxidoreductase; Provisional	98.89
PRK06753	373	hypothetical protein; Provisional	98.89
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.89
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.89
PRK06126	545	hypothetical protein; Provisional	98.89
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.88
PRK07236	386	hypothetical protein; Provisional	98.88
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.88
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.88
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.87
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.87
PLN02815	594	L-aspartate oxidase	98.87
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.86
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.85
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.85
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.84
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.84
PRK06475	400	salicylate hydroxylase; Provisional	98.84
PRK05868	372	hypothetical protein; Validated	98.83
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.83
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.82
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.82
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.82
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.81
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.81
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.8
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.8
PRK07512	513	L-aspartate oxidase; Provisional	98.79
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.79
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.79
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.79
PRK08071	510	L-aspartate oxidase; Provisional	98.78
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.78
PRK07846	451	mycothione reductase; Reviewed	98.78
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.77
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.77
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.76
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.76
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.74
PRK09897	534	hypothetical protein; Provisional	98.74
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.74
PRK07538	413	hypothetical protein; Provisional	98.74
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	98.71
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.69
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.68
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.68
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.67
PLN02985	514	squalene monooxygenase	98.67
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.65
PRK11445	351	putative oxidoreductase; Provisional	98.65
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.65
PRK06996	398	hypothetical protein; Provisional	98.65
PRK09077	536	L-aspartate oxidase; Provisional	98.64
PRK10262	321	thioredoxin reductase; Provisional	98.61
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.59
KOG2852	380	consensus Possible oxidoreductase [General functio	98.59
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.51
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.5
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.49
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	98.49
PRK08294	634	phenol 2-monooxygenase; Provisional	98.48
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.46
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.42
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.42
PLN02852	491	ferredoxin-NADP+ reductase	98.42
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.41
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	98.41
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	98.39
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.38
COG3573	552	Predicted oxidoreductase [General function predict	98.37
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.37
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.36
PRK12831	464	putative oxidoreductase; Provisional	98.35
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.3
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.29
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.28
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.26
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.25
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.24
COG4716	587	Myosin-crossreactive antigen [Function unknown]	98.24
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.23
PTZ00188	506	adrenodoxin reductase; Provisional	98.23
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.21
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.18
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.17
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.17
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.16
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.15
PTZ00367	567	squalene epoxidase; Provisional	98.14
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.13
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	98.13
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.1
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.09
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.09
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.09
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.08
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.08
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.08
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.07
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.06
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.05
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	98.04
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.04
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.04
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.03
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.02
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	98.02
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.01
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.0
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.99
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.96
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.95
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	97.95
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.94
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.89
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	97.87
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.85
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	97.83
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.82
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.81
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.81
PRK02106	560	choline dehydrogenase; Validated	97.77
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.74
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.74
PRK13984	604	putative oxidoreductase; Provisional	97.73
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.71
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.56
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.53
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.51
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.49
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.46
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	97.46
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.46
PRK10262	321	thioredoxin reductase; Provisional	97.39
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.35
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.33
PLN02785	587	Protein HOTHEAD	97.32
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.28
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.17
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	97.16
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.08
PRK12831	464	putative oxidoreductase; Provisional	97.03
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.8
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.74
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	96.6
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.51
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.37
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.35
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.26
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	96.17
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	96.15
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	96.08
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.06
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.0
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	95.97
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.92
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.91
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.88
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.83
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.8
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.78
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	95.77
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	95.63
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.62
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	95.58
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.58
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.56
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	95.43
TIGR02053	463	MerA mercuric reductase. This model represents the	95.34
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.34
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.34
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.32
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.32
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	95.24
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	95.21
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.18
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.18
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	95.17
PRK07846	451	mycothione reductase; Reviewed	95.17
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	95.14
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	95.1
PRK06370	463	mercuric reductase; Validated	95.09
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	95.08
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	95.06
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	95.01
KOG2755	334	consensus Oxidoreductase [General function predict	95.01
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	94.97
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	94.95
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.91
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	94.87
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	94.86
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.81
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.76
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.74
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	94.69
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.67
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.64
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	94.61
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.54
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.52
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.51
PRK04148	134	hypothetical protein; Provisional	94.49
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.48
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.44
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.43
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.43
PRK07845	466	flavoprotein disulfide reductase; Reviewed	94.35
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.23
PTZ00153	659	lipoamide dehydrogenase; Provisional	94.21
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	94.15
PTZ00058	561	glutathione reductase; Provisional	94.15
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	94.13
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	94.07
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	94.03
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.95
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	93.94
PLN02507	499	glutathione reductase	93.86
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	93.85
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	93.85
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	93.83
PRK06116	450	glutathione reductase; Validated	93.76
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	93.66
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	93.65
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	93.65
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.64
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	93.61
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	93.56
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	93.56
PRK07417	279	arogenate dehydrogenase; Reviewed	93.49
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	93.42
PRK06719	157	precorrin-2 dehydrogenase; Validated	93.4
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	93.35
PLN02546	558	glutathione reductase	93.35
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	93.33
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	93.32
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	93.21
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.2
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.13
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	93.1
PRK12770	352	putative glutamate synthase subunit beta; Provisio	93.09
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	93.08
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.06
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	93.02
PRK14694	468	putative mercuric reductase; Provisional	93.01
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	92.92
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	92.82
PTZ00052	499	thioredoxin reductase; Provisional	92.79
PRK13748	561	putative mercuric reductase; Provisional	92.77
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	92.73
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	92.73
PRK14727	479	putative mercuric reductase; Provisional	92.71
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	92.68
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	92.65
PRK06223	307	malate dehydrogenase; Reviewed	92.63
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	92.53
PRK11730	715	fadB multifunctional fatty acid oxidation complex	92.53
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.5
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.38
PTZ00082	321	L-lactate dehydrogenase; Provisional	92.29
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	92.25
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	92.25
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	92.21
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	92.17
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.14
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.08
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	92.07
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	92.05
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	92.01
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	91.94
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.89
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	91.88
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	91.87
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	91.86
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	91.85
PRK08306	296	dipicolinate synthase subunit A; Reviewed	91.74
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	91.64
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	91.64
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	91.6
PLN02695	370	GDP-D-mannose-3',5'-epimerase	91.59
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	91.57
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	91.42
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	91.33
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	91.26
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	91.22
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	91.12
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	91.11
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	91.09
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	91.04
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	91.04
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	91.03
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	90.93
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	90.86
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	90.84
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	90.83
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.8
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	90.77
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.76
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	90.72
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	90.69
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	90.64
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	90.54
PTZ00117	319	malate dehydrogenase; Provisional	90.54
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	90.52
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	90.36
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.35
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	90.34
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	90.3
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	90.25
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.18
PRK15116	268	sulfur acceptor protein CsdL; Provisional	90.1
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	90.02
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	90.01
PLN02602	350	lactate dehydrogenase	90.0
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	89.98
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	89.97
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.86
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.86
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	89.86
PRK09496	453	trkA potassium transporter peripheral membrane com	89.57
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	89.56
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	89.56
PRK12548	289	shikimate 5-dehydrogenase; Provisional	89.51
PLN02256	304	arogenate dehydrogenase	89.4
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	89.34
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	89.29
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.29

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=100.00  E-value=3.8e-69  Score=492.92  Aligned_cols=511  Identities=52%  Similarity=0.835  Sum_probs=425.5

Q ss_pred             CcccccccccccccCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhh
Q 048009            1 MWRRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPS   80 (531)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~   80 (531)
                      .|||+|...+.   .+.||++|||+|+.||+||.+|++.|.+|+|+|++..+||.+.+...++||.|+++.+.+.+..|.
T Consensus         1 ~~rR~fS~~~~---~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfKfsr~syL~slLrp~   77 (561)
T KOG4254|consen    1 SGRRSFSSLSA---KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFKFSRASYLLSLLRPR   77 (561)
T ss_pred             CccccccccCC---CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccccccchHHHHHHhhccc
Confidence            48888877655   457999999999999999999999999999999999999999988889999999999998888875


Q ss_pred             hhhc------Ccc--------------------------cccchhhhc--cchhhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 048009           81 LIKC------GTR--------------------------IGETWNEVV--EAKSIIVYAIFEDQLDKFSQFVDLLFDSSP  126 (531)
Q Consensus        81 ~~~~------gl~--------------------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (531)
                      ..+.      |++                          ...+..++.  ...+...++.+.+.+..+...+..+.+..+
T Consensus        78 ~~~~~~l~r~gl~l~~r~p~sft~~~~~~lp~~lllg~dm~~n~~~i~kfs~~da~~~peye~fl~~~~~~~~pl~d~~~  157 (561)
T KOG4254|consen   78 GPQELELKRHGLRLHERSPCSFTPSLMGYLPEGLLLGRDMAENQKEIAKFSQPDARAYPEYEKFLVELYGAIDPLLDAAP  157 (561)
T ss_pred             ccccchHhhhhhhhccCCCccccchhhccchhhhhhccccccchhhhhhhcCCccccchhHHHHHHHHHhccchhhhccc
Confidence            4443      332                          011122232  334566777777777777777777766554


Q ss_pred             cccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhhHHHHHHHHhccHHHHhhcccCChhHHHHHhhhhhhccCCCCC
Q 048009          127 PELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVH  206 (531)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~~~~  206 (531)
                      ..    ...+.+......-....+.+.+..+.......+..+.+....+....+.+||+.+.++..+...++++...++.
T Consensus       158 ~~----~~~~~~~~l~~~~~~~~~~~pl~l~~~i~~~~~~~~~~~~~ap~~k~~~~~fesk~~ka~l~tDavi~~~asv~  233 (561)
T KOG4254|consen  158 AD----PPLFIHGLLLVLYTLASTYAPLLLAGFIKMKPLGALYELLLAPISKVLNDWFESKDLKATLATDAVIGLLASVH  233 (561)
T ss_pred             cc----cchhhhhhhHHHHHHHHHhhhHHHhhHhhcCcHHHHHHHHhcchhhHHhhhhhccchhhhhhHHHHHHhhcccC
Confidence            11    11222222222222223334444444445566777888888888888999999999999998888898888999


Q ss_pred             CCChHHHHHHHHhhccCCCCCccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCe
Q 048009          207 TPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSI  286 (531)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~  286 (531)
                      +++..+.+++++++.++...+.|.||.||+..++.++++.++++|++|.+++.|.+|..++ |+++||+++||+++.++.
T Consensus       234 ~pgt~yvllh~vlg~~d~~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~-gka~GV~L~dG~ev~sk~  312 (561)
T KOG4254|consen  234 TPGTGYVLLHHVLGELDGHKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDS-GKAVGVRLADGTEVRSKI  312 (561)
T ss_pred             CCCcHHHHHHHHHHhhcccCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccC-CeEEEEEecCCcEEEeee
Confidence            9999999999999999999999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             EEecCChHhHHhhcCCCCCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHH
Q 048009          287 VLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHS  366 (531)
Q Consensus       287 VV~aa~~~~~~~~ll~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (531)
                      ||++|++|.|+.+|++.+.+|.++  .++++.+...+.+     ++.|.|..++.....+.|+|...++...+++.....
T Consensus       313 VvSNAt~~~Tf~kLlp~e~LPeef--~i~q~d~~spv~k-----~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~  385 (561)
T KOG4254|consen  313 VVSNATPWDTFEKLLPGEALPEEF--VIQQLDTVSPVTK-----DKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHR  385 (561)
T ss_pred             eecCCchHHHHHHhCCCccCCchh--hhhhccccccccc-----ccCcceeecCCCCCCCCCccceeEEecCchHHHHHH
Confidence            999999999999999999999887  5666666555554     344555544444323457888889998888877777


Q ss_pred             HHHHHHcCCCCCCCeEEEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCC-CChHHHHHHHHHHHHHHHHhCCCCCCc
Q 048009          367 ACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSW-MDPAYRDSFANRCFSLIDEYAPGFSSS  445 (531)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~~~~l~~~~P~~~~~  445 (531)
                      +..+.++|..+..|.|++++||..||+.+|+|+|+|.++++|.|+.+++..| +++++|+++++++++.+++++|+|++.
T Consensus       386 ~v~D~~~gl~s~~pvI~~siPS~lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsss  465 (561)
T KOG4254|consen  386 AVEDPRNGLASHRPVIELSIPSSLDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSS  465 (561)
T ss_pred             HHhChhhcccccCCeEEEecccccCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccce
Confidence            7777788888999999999999999999999999999999999988777776 778899999999999999999999999


Q ss_pred             eeEEEecCcchHHHHhCCCCCcccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCchHHHHHHHHHHH
Q 048009          446 IIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGAPGRNAAGIVLQD  525 (531)
Q Consensus       446 i~~~~~~tp~~~~~~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~sg~~aa~~i~~~  525 (531)
                      ++..++.||.|.+++++.++|++|+.+..+++....||.+.|.+++|||+|||+||+++|||+|++++.|+++|...+.+
T Consensus       466 v~~~dvgTP~t~qr~l~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPGgGV~a~aG~~~A~~a~~~  545 (561)
T KOG4254|consen  466 VESYDVGTPPTHQRFLGRPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPGGGVMAAAGRLAAHSAILD  545 (561)
T ss_pred             EEEEecCCCchhhHHhcCCCCcccCcccccccccccCCccccccCCCCCCceEEecCCCCCCCCccccchhHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988765


Q ss_pred             h
Q 048009          526 L  526 (531)
Q Consensus       526 ~  526 (531)
                      .
T Consensus       546 ~  546 (561)
T KOG4254|consen  546 R  546 (561)
T ss_pred             h
Confidence            4

>TIGR02734 crtI_fam phytoene desaturase

Probab=100.00  E-value=3.7e-55  Score=447.32  Aligned_cols=470  Identities=23%  Similarity=0.345  Sum_probs=322.9

Q ss_pred             EEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcch--hhhhhc-Cc--ccccchhh
Q 048009           20 ALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLR--PSLIKC-GT--RIGETWNE   94 (531)
Q Consensus        20 vvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~--~~~~~~-gl--~~~~~~~~   94 (531)
                      |||||||++||+||.+|+++|++|+|+|+++++||+++++. ..||.||.|++++....  ..+++. |+  ...+.+..
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~~~~~~l~~~lg~~l~~~l~~~~   79 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLE-DDGFRFDTGPTVITMPEALEELFALAGRDLADYVELVP   79 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEe-cCCeEEecCCeEEccccHHHHHHHHcCCChhheEEEEE
Confidence            69999999999999999999999999999999999999987 68999999998754321  122222 32  11111100


Q ss_pred             hc-----cchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChh------
Q 048009           95 VV-----EAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQK------  163 (531)
Q Consensus        95 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  163 (531)
                      ..     ...+...+. +....+.+...+..+.    +.....+..+.+.....+.      ............      
T Consensus        80 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~l~~~~----p~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  148 (502)
T TIGR02734        80 LDPFYRLCWEDGSQLD-VDNDQEELEAQIARFN----PGDVAGYRRFLDYAERVYR------EGYRKLGYVPFLSPRDLL  148 (502)
T ss_pred             CCCceEEECCCCCEEE-ecCCHHHHHHHHHHhC----cccHHHHHHHHHHHHHHHH------HHHHHHhhCCCCCHHHHH
Confidence            00     000000000 0000111111111110    0000000111111110000      000000000000      


Q ss_pred             ---hHHHHHHHHhccHHHHhhcccCChhHHHHHhhhh-hhccCCCCCCCChHHHHHHHHhhccCCCCCccccccCchHHH
Q 048009          164 ---DLVEFVDLLLSPASKVLNKWFETDVLKATLATDA-VIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSV  239 (531)
Q Consensus       164 ---~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l  239 (531)
                         ....+......++.+++++++.++.++.++.... +.+.  .+......+.++...    ....+.| ++.||+..+
T Consensus       149 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g~--~p~~~~~~~~l~~~~----~~~~g~~-~~~gG~~~l  221 (502)
T TIGR02734       149 RADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLGG--NPFRTPSIYALISAL----EREWGVW-FPRGGTGAL  221 (502)
T ss_pred             hHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceeecc--CcccchHHHHHHHHH----HhhceEE-EcCCCHHHH
Confidence               0001112246788899999999999999887433 3332  333333334333322    2234556 899999999


Q ss_pred             HHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHHHHHhhccCC
Q 048009          240 SMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDY  319 (531)
Q Consensus       240 ~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i~~~~~  319 (531)
                      +++|.+.++++|++|+++++|++|..++ +++++|++++|+++.||.||+|+++..++..|++.+..++...+.+++.++
T Consensus       222 ~~al~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  300 (502)
T TIGR02734       222 VAAMAKLAEDLGGELRLNAEVIRIETEG-GRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRP  300 (502)
T ss_pred             HHHHHHHHHHCCCEEEECCeEEEEEeeC-CEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCc
Confidence            9999999999999999999999999887 888889999998899999999999988777788665455555567778888


Q ss_pred             CCCeEEEeeecCCCC-ccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCCCCC
Q 048009          320 SSGTTKINLAVDKLP-QFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPG  398 (531)
Q Consensus       320 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G  398 (531)
                      +.+.+++++++++.+ .+.        ...+|  ++++..+....+...   ...+.++++|++++++||..||+++|+|
T Consensus       301 s~s~~~~~lgl~~~~~~~~--------~~~~~--~~~~~~~~~~~~~~~---~~~g~~~~~p~~~v~~~s~~dp~~aP~G  367 (502)
T TIGR02734       301 SPSLFVLYFGLLGVDGHWP--------QLAHH--TLCFGPRYKELFDEI---FRKGRLAEDPSLYLHRPTVTDPSLAPPG  367 (502)
T ss_pred             CCeeeEEEEeeccccCcCC--------CcCce--eEecCcCHHHHHHHH---hcCCCCCCCCcEEEEcCCCCCCCCCCCC
Confidence            889999999999644 221        11122  566644332222222   1346788899999999999999999999


Q ss_pred             ceEEEEEeccccCC-CCCCCCCChHHHHHHHHHHHHHHHHh-CCCCCCceeEEEecCcchHHHHhCCCCCcccccCCCcc
Q 048009          399 NHVINLFIQYTPYK-PSDGSWMDPAYRDSFANRCFSLIDEY-APGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLD  476 (531)
Q Consensus       399 ~~~l~~~~~~~~~~-~~~~~~~~~~~k~~~~~~~~~~l~~~-~P~~~~~i~~~~~~tp~~~~~~~~~~~G~~~~~~~~~~  476 (531)
                      ++++++++. .|+. .....|..  .|+++.+++++.|+++ +|+++++|+..++.||.||++|++.++|++||..+.+.
T Consensus       368 ~~~~~~~~~-~~~~~~~~~~~~~--~k~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~  444 (502)
T TIGR02734       368 CENLYVLAP-VPHLGTADVDWSV--EGPRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLT  444 (502)
T ss_pred             CccEEEEEe-CCCCCCCCCCcHH--HHHHHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHhcCCCCccccchhhchh
Confidence            999988764 5553 32335754  5899999999999998 99999999999999999999999999999999999889


Q ss_pred             ccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCc--hHHHHHHHHHHHhhhh
Q 048009          477 SLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVLQDLKKS  529 (531)
Q Consensus       477 ~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~~~~~~~  529 (531)
                      |...+||.    ..+|+++|||+||+|++||+|++++  ||++||+.|+++++..
T Consensus       445 q~~~~rp~----~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~~~~~~  495 (502)
T TIGR02734       445 QSAWFRPH----NRDRKIDNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGDLAPG  495 (502)
T ss_pred             hcccCCCC----CCCCCCCCEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhhccCC
Confidence            88778883    4578999999999999999999997  9999999999988764

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR02730 carot_isom carotene isomerase

Probab=100.00  E-value=6.6e-52  Score=420.83  Aligned_cols=467  Identities=23%  Similarity=0.305  Sum_probs=304.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcc----hhhhhhc-----Cccc
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLL----RPSLIKC-----GTRI   88 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~----~~~~~~~-----gl~~   88 (531)
                      +||||||||++||+||..|+++|++|+|+||++.+||+++++. .+||.||.|++.+...    .++.+..     +...
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFE-REGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKL   79 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEec-cCCEEEEecchhheecCCcccccHHHHHHHHcCCcc
Confidence            6999999999999999999999999999999999999999987 6999999999875322    2332221     2110


Q ss_pred             ccchhh--hc-cchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhh--------hhHHHHHHHH
Q 048009           89 GETWNE--VV-EAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNS--------AFWAHCLRRA  157 (531)
Q Consensus        89 ~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~  157 (531)
                      ......  +. ...+...+. .....+.+...+..++    +.....+..|.+.....+...        ..........
T Consensus        80 ~~~~~~~~~~~~~~~g~~~~-~~~d~~~~~~~l~~~~----P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (493)
T TIGR02730        80 ETIPDPVQIHYHLPNGLNVK-VHREYDDFIQELVAKF----PHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVF  154 (493)
T ss_pred             cccCCCccEEEECCCCeeEe-eecCHHHHHHHHHHHC----chhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHH
Confidence            000000  00 000000000 0000011111110000    000000001111100000000        0000000000


Q ss_pred             HhcChhhHHHHHHHHhccHHHHhhcccCChhHHHHHhhhhhhccCCC-CCCCChHHHHHHHHhhccCCCCCccccccCch
Q 048009          158 ISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSS-VHTPGSGYVLLHHVMGETDGNPGIWSYVEGGM  236 (531)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~  236 (531)
                      .. .......+..+...++.+++++++.++.++..+....+.....+ ...+. .+..+.+. .  ....+.| ++.||+
T Consensus       155 ~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~-~~~~~~~~-~--~~~~g~~-~~~gG~  228 (493)
T TIGR02730       155 FK-HPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPM-INAGMVFS-D--RHYGGIN-YPKGGV  228 (493)
T ss_pred             hh-chhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchh-hhHHHhhc-c--cccceEe-cCCChH
Confidence            00 00111123334457889999999999999998874433222222 23332 22222111 0  1223444 899999


Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHHHHHhhc
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKH  316 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i~~  316 (531)
                      ..++++|.+.++++|++|+++++|++|..++ +++.+|++.+|+++.||.||+|++++.++.+|++.+.+++.....+++
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~  307 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILEN-GKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRN  307 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEecC-CcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhh
Confidence            9999999999999999999999999999987 888999999998899999999999999888899877677766667778


Q ss_pred             cCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCCC
Q 048009          317 SDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISP  396 (531)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap  396 (531)
                      ++++.+.+++|++++.....        .....|  .+++ .+. .           .....++++++++||..||+++|
T Consensus       308 ~~~s~s~~~~~l~l~~~~~p--------~~~~~~--~~~~-~~~-~-----------~~~~~~~~~~v~~ps~~dps~aP  364 (493)
T TIGR02730       308 YVKSPSFLSLHLGVKADVLP--------PGTECH--HILL-EDW-T-----------NLEKPQGTIFVSIPTLLDPSLAP  364 (493)
T ss_pred             ccCCCceEEEEEEecCccCC--------CCCCcc--EEec-chh-h-----------ccCCCCCeEEEEeCCCCCCCCCc
Confidence            88888999999999973210        000112  2333 111 1           11234688999999999999999


Q ss_pred             CCceEEEEEeccccCCCCCC--CCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCCCCCcccccCCC
Q 048009          397 PGNHVINLFIQYTPYKPSDG--SWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMG  474 (531)
Q Consensus       397 ~G~~~l~~~~~~~~~~~~~~--~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~~~G~~~~~~~~  474 (531)
                      +|+++++++++ .++..+.+  .-++++.|+++.+++++.|++++|+++++|+..++.||.|+++|++.++|+ ||....
T Consensus       365 ~G~~~i~~~~~-~~~~~w~~~~~~~y~~~k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~~~~~~G~-~G~~~~  442 (493)
T TIGR02730       365 EGHHIIHTFTP-SSMEDWQGLSPKDYEAKKEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRFLGRDSGT-YGPIPR  442 (493)
T ss_pred             CCcEEEEEecC-CChhhccCCCcHHHHHHHHHHHHHHHHHHHHHCCChhhcEEEEEeeCchhHHHHhCCCCcc-cCCccc
Confidence            99999888753 23221110  001245789999999999999999999999999999999999999999988 665544


Q ss_pred             ccccccCC-CCCCCCCCCCCCCCeeecCCCCCCCCCcCCc--hHHHHHHHHHHHhh
Q 048009          475 LDSLFLMR-PVKGWSNYRTPLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVLQDLK  527 (531)
Q Consensus       475 ~~~~~~~r-p~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~~~~~  527 (531)
                      ..+...++ |     ..+|+++|||+||+|++||+|++++  ||+.||+.|+++++
T Consensus       443 ~~~~~~~~~~-----~~~t~i~gLyl~G~~~~pG~Gv~g~~~sG~~~a~~i~~~~~  493 (493)
T TIGR02730       443 RTLPGLLPMP-----FNRTAIPGLYCVGDSCFPGQGLNAVAFSGFACAHRVAADLG  493 (493)
T ss_pred             ccccccccCC-----CCCCCCCCeEEecCcCCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            33333333 3     4689999999999999999999996  99999999998764

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=100.00  E-value=7.4e-51  Score=414.24  Aligned_cols=454  Identities=19%  Similarity=0.272  Sum_probs=302.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcch-----hhhhhc-Ccccc-c
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLR-----PSLIKC-GTRIG-E   90 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~-----~~~~~~-gl~~~-~   90 (531)
                      .||+|||||++||+||..|+++|++|+|+|+++++||+++++. .+||.||.|+++.....     +.++++ |+... .
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~   80 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFR-RRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEA   80 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceec-cCCEEEeecceEEEecCcCCHHHHHHHHcCCCCccc
Confidence            6899999999999999999999999999999999999999987 68999999998865432     244433 54311 0


Q ss_pred             c-hhhhc--cchhh-hHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhh-------h-----hhHHHHH
Q 048009           91 T-WNEVV--EAKSI-IVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRN-------S-----AFWAHCL  154 (531)
Q Consensus        91 ~-~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~  154 (531)
                      . .+...  ...+. ..+. .....+++...+...+   +.+     ..+.......+..       .     .......
T Consensus        81 ~~~d~~~~~~~~dg~~~~~-~~~d~~~~~~~l~~~~---p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (492)
T TIGR02733        81 KILDPACAVDLPDGSEPIP-LWHDPDRWQKERERQF---PGS-----ERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLL  151 (492)
T ss_pred             ccCCCCcEEEECCCceEee-eecCHHHHHHHHHHHC---CCh-----HHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHH
Confidence            0 00000  00010 0000 0000111111111100   000     0011110000000       0     0000000


Q ss_pred             HHHHhcChhhHHHHHHHHhccHHHHhhcc--cCChhHHHHHhhhhhhccCCCCCCCChHHHHHHHHhhccCCCCCccccc
Q 048009          155 RRAISLGQKDLVEFVDLLLSPASKVLNKW--FETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYV  232 (531)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (531)
                      ......... ......+...++.++++++  +.++.++.++..........++..+...+..+.  +.......|.| ++
T Consensus       152 ~~~~~~~~~-~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~G~~-~~  227 (492)
T TIGR02733       152 QLVSALRPD-TLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATV--LQMAQAPHGLW-HL  227 (492)
T ss_pred             HHHHhcChh-hhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHH--hhccccCCCce-ee
Confidence            000000111 0112223457888888875  889999998875432111123333333332211  11122334666 89


Q ss_pred             cCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC-----cEEEcCeEEecCChHhHHhhcCCCCCCC
Q 048009          233 EGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG-----AQVHSSIVLSNATPYKTFMDLVPGNILP  307 (531)
Q Consensus       233 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g-----~~~~ad~VV~aa~~~~~~~~ll~~~~~~  307 (531)
                      +||+++|+++|++.++++|++|+++++|++|..++ +++.+|++.+|     +++.||+||+|+++..+ .+|++++.++
T Consensus       228 ~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~-~~ll~~~~~~  305 (492)
T TIGR02733       228 HGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKG-GRAGWVVVVDSRKQEDLNVKADDVVANLPPQSL-LELLGPLGLP  305 (492)
T ss_pred             cCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeC-CeEEEEEEecCCCCceEEEECCEEEECCCHHHH-HHhcCcccCC
Confidence            99999999999999999999999999999999987 77777877665     57899999999999885 5788766678


Q ss_pred             hHHHHHhhccCCCCCeEEEeeecCCCC-ccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEe
Q 048009          308 DDFILSIKHSDYSSGTTKINLAVDKLP-QFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTI  386 (531)
Q Consensus       308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                      +...+.+++++++.+.+++++++++.. ++.         ...|.  ...           +        .....++++.
T Consensus       306 ~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~---------~~~~~--~~~-----------~--------~~~~~~~v~~  355 (492)
T TIGR02733       306 PGYRKRLKKLPEPSGAFVFYLGVKRAALPVD---------CPPHL--QFL-----------S--------DHQGSLFVSI  355 (492)
T ss_pred             HHHHHHHhcCCCCCceEEEEEeecccccCCC---------CCcce--eec-----------c--------CCCceEEEEe
Confidence            788888889999888999999998732 221         01121  111           0        0113667777


Q ss_pred             CCCCCCCCCCCCceEEEEEe--ccccCCC-CCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCC
Q 048009          387 PSVLDKTISPPGNHVINLFI--QYTPYKP-SDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGL  463 (531)
Q Consensus       387 ~s~~d~~~ap~G~~~l~~~~--~~~~~~~-~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~  463 (531)
                      ++ .||+++|+|++++++++  ++.+|.. ...+|  .+.|+++++++++.+++++|+++++|+..++.||.||++|++.
T Consensus       356 ~~-~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y--~~~k~~~~~~il~~le~~~p~l~~~i~~~~v~TP~t~~~~~~~  432 (492)
T TIGR02733       356 SQ-EGDGRAPQGEATLIASSFTDTNDWSSLDEEDY--TAKKKQYTQTIIERLGHYFDLLEENWVHVELATPRTFERWTGR  432 (492)
T ss_pred             CC-ccccCCCCCceEEEEEcCCCHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHCCCccccEEEEEccCCchHHHHhCC
Confidence            65 47899999999986654  3334321 11234  3468999999999999999999999999999999999999999


Q ss_pred             CCCcccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCc--hHHHHHHHHHHH
Q 048009          464 TGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVLQD  525 (531)
Q Consensus       464 ~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~~~  525 (531)
                      ++|++||..+.+.|...+++     ..+|+++|||+||+++|||+|++++  ||+.||+.|+++
T Consensus       433 ~~G~~~G~~~~~~q~~~~~~-----~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~~~  491 (492)
T TIGR02733       433 PQGIVGGLGQRPSTFGPFGL-----SSRTPVKGLWLCGDSIHPGEGTAGVSYSALMVVRQILAS  491 (492)
T ss_pred             CCcEECCCCcCccccCCcCC-----CCCCCCCCeEEecCccCCCCcHHHHHHHHHHHHHHHhhc
Confidence            99999999988888655554     4478999999999999999999998  999999999864

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.5e-50  Score=406.54  Aligned_cols=449  Identities=34%  Similarity=0.511  Sum_probs=308.8

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhh-hhhc-C-cccc-c
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPS-LIKC-G-TRIG-E   90 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~-~~~~-g-l~~~-~   90 (531)
                      |..+||||||||++||+||.+|+++|++|+|+||++.+||++++.+ ..||.||+|++++.+..+. ++++ + +... +
T Consensus         1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e-~~Gf~fd~G~~~~~~~~~~~~~~~l~~l~~~~l   79 (487)
T COG1233           1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFE-LDGFRFDTGPSWYLMPDPGPLFRELGNLDADGL   79 (487)
T ss_pred             CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEe-ccceEeccCcceeecCchHHHHHHhccCcccce
Confidence            3579999999999999999999999999999999999999999987 5599999999776554442 3322 3 3200 0


Q ss_pred             chh--------------hhc---------------cchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhh
Q 048009           91 TWN--------------EVV---------------EAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFK  141 (531)
Q Consensus        91 ~~~--------------~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (531)
                      ...              .+.               .+.+...+..+.....+.++.+...   ........         
T Consensus        80 ~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---------  147 (487)
T COG1233          80 DLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAAL---LLAPPRSE---------  147 (487)
T ss_pred             eeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhh---cCCCchhh---------
Confidence            000              000               1112222222222111111111111   00000000         


Q ss_pred             hhhhhhhhHHHHHHHHHhcChhhHHHHHHHHhccHHHHhhcccCChhHHHHHhhhhhhccCCCCCCCChHHHHHHHHhhc
Q 048009          142 NKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGE  221 (531)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  221 (531)
                                 ..  ...........+......+..+++..+|.++.++..+......+. .++..+++.+.++++.   
T Consensus       148 -----------~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~-~~p~~~~a~~~~~~~~---  210 (487)
T COG1233         148 -----------LL--LVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGG-APPSTPPALYLLLSHL---  210 (487)
T ss_pred             -----------hh--hccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCCchhHHHHHHHHh---
Confidence                       00  001112233344445567777778878999999999886554443 4555555334343333   


Q ss_pred             cCCCCCccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009          222 TDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       222 ~~~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                       ....|.+ +|+||++.|+++|++.++++||+|+++++|++|..++ |+.+++++.+|+.+++|.||+++.+ .+...+.
T Consensus       211 -~~~~G~~-~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~-g~g~~~~~~~g~~~~ad~vv~~~~~-~~~~~l~  286 (487)
T COG1233         211 -GLSGGVF-YPRGGMGALVDALAELAREHGGEIRTGAEVSQILVEG-GKGVGVRTSDGENIEADAVVSNADP-ALLARLL  286 (487)
T ss_pred             -cccCCee-eeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeC-CcceEEeccccceeccceeEecCch-hhhhhhh
Confidence             3344555 9999999999999999999999999999999999998 8877788888877999999999998 4334444


Q ss_pred             CCCCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCe
Q 048009          302 PGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPI  381 (531)
Q Consensus       302 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (531)
                      +.. ..   .+......+..+.+..+++++..  .         ....+++.++. .++...+...|.+ ..|..+   +
T Consensus       287 ~~~-~~---~~~~~~~~~~~~al~~~~g~~~~--~---------~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~~~---~  346 (487)
T COG1233         287 GEA-RR---PRYRGSYLKSLSALSLYLGLKGD--L---------LPLAHHTTILL-GDTREQIEEAFDD-RAGRPP---P  346 (487)
T ss_pred             hhh-hh---hccccchhhhhHHHHhccCCCCC--C---------cchhhcceEec-CCcHHHHHHHhhh-hcCCCC---c
Confidence            321 11   11222233335556666666653  0         01123334454 7778888888877 667655   8


Q ss_pred             EEEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHh
Q 048009          382 IEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREI  461 (531)
Q Consensus       382 ~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~  461 (531)
                      +++++||..||++||+|++.+.+  .+.++. ..+.|  ++.|+++.+. ++.+++++|+++++|+..++.||.+++++.
T Consensus       347 ~~v~~ps~~Dps~AP~G~~~~~~--~~~~~~-~~~~~--~~~~~~~~~~-~~~~~~~~p~~~~~iv~~~~~tp~~~e~~~  420 (487)
T COG1233         347 LYVSIPSLTDPSLAPEGKHSTFA--QLVPVP-SLGDY--DELKESLADA-IDALEELAPGLRDRIVAREVLTPLDLERYL  420 (487)
T ss_pred             eEEeCCCCCCCccCCCCCcceee--eeeecC-cCCCh--HHHHHHHHHH-HHHHhhcCCCcccceeEEEEeChHHHHHhc
Confidence            99999999999999999983322  223332 11123  3467888888 889999999999999999999999999999


Q ss_pred             CCCCCcccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCchHHHHHHHHHHHhh
Q 048009          462 GLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGAPGRNAAGIVLQDLK  527 (531)
Q Consensus       462 ~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~sg~~aa~~i~~~~~  527 (531)
                      +.+.|+++|..+.++|...+||.++    +|||+|||++|++||||+|+++++|..++..++.++.
T Consensus       421 ~~~~G~~~~~~~~~~q~~~~rp~~~----~t~i~~LYl~Ga~t~PG~Gv~g~~g~~~a~~~~~~~~  482 (487)
T COG1233         421 GLPGGDIFGGAHTLDQLGPFRPPPK----STPIKGLYLVGASTHPGGGVPGVPGSAAAVALLIDLD  482 (487)
T ss_pred             CCCCCcccchhcChhhhcCCCCCCC----CCCcCceEEeCCcCCCCCCcchhhhhHHHHHhhhccc
Confidence            9999999999999999999999532    7999999999999999999999977777777666543

>PLN02612 phytoene desaturase

Probab=100.00  E-value=1.1e-32  Score=281.75  Aligned_cols=432  Identities=16%  Similarity=0.231  Sum_probs=249.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGET   91 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~   91 (531)
                      ...+|+|||||++||+||++|+++|++|+|+|+++++||++.++....|+.+|.|.+++...++++.+.    |+.....
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~~  171 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQ  171 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccce
Confidence            458999999999999999999999999999999999999999876457899999999877766665443    5532221


Q ss_pred             hhhhc----cchhhhHHH--HHHHHH-HHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhh
Q 048009           92 WNEVV----EAKSIIVYA--IFEDQL-DKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKD  164 (531)
Q Consensus        92 ~~~~~----~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (531)
                      +....    .......+.  .+.... ..+.... .++...+      ...+.+++...       .... ...   ...
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~-~~l~~~~------~ls~~~kl~~~-------~~~~-~~~---~~~  233 (567)
T PLN02612        172 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIW-AILRNNE------MLTWPEKIKFA-------IGLL-PAI---VGG  233 (567)
T ss_pred             ecccceEEEecCCCCceeeCcCchhcCChhhhhH-HHHhcCc------cCCHHHHHHHH-------Hhhh-HHh---ccc
Confidence            11100    000000000  000000 0000000 0100000      00011111100       0000 000   000


Q ss_pred             HHHHHHHHhccHHHHhhcccCChhHHH-HHhhhhhhcc-CCCCCCCChHHHH--HHHHhhccCCCCCccccccCch-HHH
Q 048009          165 LVEFVDLLLSPASKVLNKWFETDVLKA-TLATDAVIGT-MSSVHTPGSGYVL--LHHVMGETDGNPGIWSYVEGGM-GSV  239 (531)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~~~~~~~l~~-~~~~~~~~g~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~gG~-~~l  239 (531)
                      .....+....++.+|+++....+.+.. ++... +.+. ...+......+.+  +..++.  ........++.|+. +.+
T Consensus       234 ~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l-~~~~~~~~p~~~S~~~~l~~l~~~l~--~~~gs~~~~~~G~~~~~l  310 (567)
T PLN02612        234 QAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAM-SKALNFINPDELSMQCILIALNRFLQ--EKHGSKMAFLDGNPPERL  310 (567)
T ss_pred             chhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHH-HHHhcCCCHHHhhHHHHHHHHHHHHh--ccCCceEeeecCCchHHH
Confidence            011123346788888888655554443 33211 1111 1122222222221  111111  11112233566665 679


Q ss_pred             HHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHHHHHhhccCC
Q 048009          240 SMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDY  319 (531)
Q Consensus       240 ~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i~~~~~  319 (531)
                      ++.|.+.+++.|++|++|++|++|..++++++++|++.+|+++.||+||+|+++.. +..|++....+..+.+.++++.+
T Consensus       311 ~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~-l~~Ll~~~~~~~~~~~~l~~l~~  389 (567)
T PLN02612        311 CMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDI-LKLLLPDQWKEIPYFKKLDKLVG  389 (567)
T ss_pred             HHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHH-HHHhCcchhcCcHHHHHHHhcCC
Confidence            99999999999999999999999998654667778888998899999999886655 67788764334455666666665


Q ss_pred             CCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCCCCCc
Q 048009          320 SSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGN  399 (531)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~  399 (531)
                       .+++++++.++++...        .  ..+  ++ +..+.                  ...++...++. .+.++++|+
T Consensus       390 -~~v~~v~l~~dr~~~~--------~--~~~--~~-~~~~~------------------~~~~~~d~S~~-~~~~~~~~~  436 (567)
T PLN02612        390 -VPVINVHIWFDRKLKN--------T--YDH--LL-FSRSP------------------LLSVYADMSTT-CKEYYDPNK  436 (567)
T ss_pred             -CCeEEEEEEECcccCC--------C--CCc--ee-ecCCC------------------Cceeehhhhhc-chhhcCCCC
Confidence             6899999999986311        0  111  22 21110                  01112222222 234556677


Q ss_pred             eEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCC------CCcee-EEEecCcchHHHHhCCCCCcccccC
Q 048009          400 HVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGF------SSSII-GYDMLTPPDLEREIGLTGGNIFHGA  472 (531)
Q Consensus       400 ~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~------~~~i~-~~~~~tp~~~~~~~~~~~G~~~~~~  472 (531)
                      +++.+..  .+..    .|... .++++++.++++|++++|+.      +..+. ...+.+|.++..+  .+++.     
T Consensus       437 ~ll~~~~--~~a~----~~~~~-sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~--~pg~~-----  502 (567)
T PLN02612        437 SMLELVF--APAE----EWISR-SDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKT--VPNCE-----  502 (567)
T ss_pred             eEEEEEE--EcCh----hhhcC-CHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEe--CCCCc-----
Confidence            6555432  2221    34332 35899999999999999976      22333 3566788776321  22211     


Q ss_pred             CCccccccCCCCCCCCCCCCCCCCeeecCCCCCCC--CCcCCc--hHHHHHHHHHHHhhh
Q 048009          473 MGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPG--GGVMGA--PGRNAAGIVLQDLKK  528 (531)
Q Consensus       473 ~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g--~g~~~~--sg~~aa~~i~~~~~~  528 (531)
                             .++|     ..+||++|||||||||.++  ++++||  ||+.||+.|+++++.
T Consensus       503 -------~~rp-----~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~~~  550 (567)
T PLN02612        503 -------PCRP-----LQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYEL  550 (567)
T ss_pred             -------ccCc-----cccCccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHhcc
Confidence                   1466     5678999999999999764  577887  999999999998754

>PRK07233 hypothetical protein; Provisional

Probab=100.00  E-value=7.2e-31  Score=265.15  Aligned_cols=416  Identities=23%  Similarity=0.348  Sum_probs=240.6

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccchhh
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGETWNE   94 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~~~~   94 (531)
                      +|+|||||++||+||+.|+++|++|+|+|+++++||++.+.. ..|+.+|.|.+++....+.+.+.    |+.....+..
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~-~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~~~~~~   79 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFE-FGGLPIERFYHHIFKSDEALLELLDELGLEDKLRWRE   79 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cCCcchhhhhhhhccccHHHHHHHHHcCCCCceeecc
Confidence            699999999999999999999999999999999999999876 66999999988765555555443    4421111100


Q ss_pred             hcc--chhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhhHHHHHHHH
Q 048009           95 VVE--AKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLL  172 (531)
Q Consensus        95 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (531)
                      ...  ..+...++        +..... +.....       ....++.+...       ....    ...  .....+..
T Consensus        80 ~~~~~~~~~~~~~--------~~~~~~-~~~~~~-------~~~~~~~~~~~-------~~~~----~~~--~~~~~~~~  130 (434)
T PRK07233         80 TKTGYYVDGKLYP--------LGTPLE-LLRFPH-------LSLIDKFRLGL-------LTLL----ARR--IKDWRALD  130 (434)
T ss_pred             CceEEEECCeEec--------CCCHHH-HHcCCC-------CCHHHHHHhHH-------HHHh----hhh--cccccccc
Confidence            000  00000000        000000 000000       00001110000       0000    000  00011223


Q ss_pred             hccHHHHhhcccCChhHHHHHhhh--hhhccCCCCCCCChHHHHHHHHhhcc----CCCCCccccccCchHHHHHHHHHH
Q 048009          173 LSPASKVLNKWFETDVLKATLATD--AVIGTMSSVHTPGSGYVLLHHVMGET----DGNPGIWSYVEGGMGSVSMAIGSA  246 (531)
Q Consensus       173 ~~~~~~~l~~~~~~~~l~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~gG~~~l~~~l~~~  246 (531)
                      ..++.+++.+.+.++..+.++...  .+.+.  .+........ +..+....    ......+.+++||++.++++|.+.
T Consensus       131 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~  207 (434)
T PRK07233        131 KVPAEEWLRRWSGEGVYEVFWEPLLESKFGD--YADDVSAAWL-WSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEA  207 (434)
T ss_pred             cccHHHHHHHhcCHHHHHHHHHHHHhcccCC--CccccCHHHH-HHHHhhhhccccccCCceEeccCCCHHHHHHHHHHH
Confidence            466777777766555444444321  12221  2222222221 11111000    000112458999999999999999


Q ss_pred             HHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHHHHHhhccCCCCCeEEE
Q 048009          247 AREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKI  326 (531)
Q Consensus       247 ~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i~~~~~~~~~~~~  326 (531)
                      +++.|++|+++++|++|+.++ ++++.+. .+++++.||+||+|+++.. +.++++.  +++...+.++++.+ .+.+++
T Consensus       208 l~~~g~~v~~~~~V~~i~~~~-~~~~~~~-~~~~~~~ad~vI~a~p~~~-~~~ll~~--~~~~~~~~~~~~~~-~~~~~~  281 (434)
T PRK07233        208 IEARGGEIRLGTPVTSVVIDG-GGVTGVE-VDGEEEDFDAVISTAPPPI-LARLVPD--LPADVLARLRRIDY-QGVVCM  281 (434)
T ss_pred             HHhcCceEEeCCCeeEEEEcC-CceEEEE-eCCceEECCEEEECCCHHH-HHhhcCC--CcHHHHhhhcccCc-cceEEE
Confidence            999999999999999999877 6665454 5666799999999988877 4677754  56666677777776 677888


Q ss_pred             eeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCCCCCceEEEEEe
Q 048009          327 NLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFI  406 (531)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~  406 (531)
                      ++.++++..            . + .++.+..                  ++.++..+..++..+|+.+|+|++++.+.+
T Consensus       282 ~l~~~~~~~------------~-~-~~~~~~~------------------~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~  329 (434)
T PRK07233        282 VLKLRRPLT------------D-Y-YWLNIND------------------PGAPFGGVIEHTNLVPPERYGGEHLVYLPK  329 (434)
T ss_pred             EEEecCCCC------------C-C-ceeeecC------------------CCCCcceEEEecccCCccccCCceEEEEee
Confidence            999987431            0 1 1122100                  112233344556678888878887655432


Q ss_pred             ccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCC-ceeEEEecCcchHHHHhCCCCCcccccCCCccccccCCCCC
Q 048009          407 QYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSS-SIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVK  485 (531)
Q Consensus       407 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~-~i~~~~~~tp~~~~~~~~~~~G~~~~~~~~~~~~~~~rp~~  485 (531)
                       +.+..  ...|..  .++++.+.+++.|++++|+++. .++...+.   .+. + .   +..|..  .   ....+|  
T Consensus       330 -~~~~~--~~~~~~--~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~---r~~-~-a---~~~~~~--g---~~~~~~--  389 (434)
T PRK07233        330 -YLPGD--HPLWQM--SDEELLDRFLSYLRKMFPDFDRDDVRAVRIS---RAP-Y-A---QPIYEP--G---YLDKIP--  389 (434)
T ss_pred             -ecCCC--ChhhcC--CHHHHHHHHHHHHHHhCCCCChhheeeEEEE---Eec-c-c---cccccC--c---hhhcCC--
Confidence             22211  112322  3589999999999999998853 33333321   111 1 0   111110  0   001333  


Q ss_pred             CCCCCCCCCCCeeecCCCCC--CCCCcCCc--hHHHHHHHHHHHhhh
Q 048009          486 GWSNYRTPLQGLYMCGSGTH--PGGGVMGA--PGRNAAGIVLQDLKK  528 (531)
Q Consensus       486 ~~~~~~t~~~~ly~aG~~~~--~g~g~~~~--sg~~aa~~i~~~~~~  528 (531)
                         ..+++++||||||++..  ++.++.+|  ||+.||+.|++.+.+
T Consensus       390 ---~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~~  433 (434)
T PRK07233        390 ---PYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRRN  433 (434)
T ss_pred             ---CcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhcC
Confidence               45678899999999642  34578887  999999999998764

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.97  E-value=1.1e-29  Score=255.01  Aligned_cols=442  Identities=15%  Similarity=0.154  Sum_probs=231.4

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccchhh
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGETWNE   94 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~~~~   94 (531)
                      +|+|||||++||+||+.|+++|++|+|+|+++.+||+++++....|+.+|.|.+++...++++++.    |+...+....
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~   80 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNLLLKE   80 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccccccc
Confidence            589999999999999999999999999999999999999975457999999999877666665544    4432211110


Q ss_pred             hc---cchhhhHHH-HHHHHH-HHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcC----hhhH
Q 048009           95 VV---EAKSIIVYA-IFEDQL-DKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLG----QKDL  165 (531)
Q Consensus        95 ~~---~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  165 (531)
                      ..   ...+..... .+.... .++ .....++...       ...+.++++...       ..........    ....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~P~-~~~~~~l~~~-------~ls~~dklr~~~-------~~~~~~~~~~~~~~~~~~  145 (474)
T TIGR02732        81 HTHTFVNKGGDIGELDFRFATGAPF-NGLKAFFTTS-------QLKWVDKLRNAL-------ALGTSPIVRGLVDYDGAM  145 (474)
T ss_pred             ceeEEEcCCCcccccccCCCCCCch-hhhHHHhcCC-------CCCHHHHHHHHH-------HhhhhHHHhhccccchhh
Confidence            00   000000000 000000 000 0000011000       011111111000       0000000000    0001


Q ss_pred             HHHHHHHhccHHHHhhcccCChh-HHHHHhhhhhhcc-CCCCCCCChHHHHH-HHHhhccCCCCCccccccCchHH-HHH
Q 048009          166 VEFVDLLLSPASKVLNKWFETDV-LKATLATDAVIGT-MSSVHTPGSGYVLL-HHVMGETDGNPGIWSYVEGGMGS-VSM  241 (531)
Q Consensus       166 ~~~~~~~~~~~~~~l~~~~~~~~-l~~~~~~~~~~g~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gG~~~-l~~  241 (531)
                      ..+......++.++++++..++. ++.++... +.+. ...+...++...+. .+.+.. ........+++||... +.+
T Consensus       146 ~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pl-l~~~~~~~~~~~Sa~~~~~~~~~~~~-~~~~s~~~~~~g~~~~~l~~  223 (474)
T TIGR02732       146 KTIRDLDKISFAEWFLSHGGSLGSIKRMWDPI-AYALGFIDCENISARCMLTIFMLFAA-KTEASKLRMLKGSPDKYLTK  223 (474)
T ss_pred             hhhhhhccccHHHHHHHcCCCHHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHh-CCCcceeeeecCCcchhHHH
Confidence            22233456889999999888875 44444321 2221 11223222222211 112221 1222233477888766 677


Q ss_pred             HHHHHHHHcCcEEEcCcceeEEEecC--CC--ceeEEEeCCC---cEEEcCeEEecCChHhHHhhcCCCCCCChHHHHHh
Q 048009          242 AIGSAAREAGAHIVTRAEVSQLMIND--SG--RVNGVQLADG---AQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSI  314 (531)
Q Consensus       242 ~l~~~~~~~G~~i~~~~~V~~I~~~~--~g--~~~~V~~~~g---~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i  314 (531)
                      .+.+.++++|++|+++++|++|..++  ++  ++++|++.+|   +++.||+||+|++++. +.+|+++..-.......+
T Consensus       224 pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~-~~~Ll~~~~~~~~~~~~l  302 (474)
T TIGR02732       224 PILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPG-IKRLLPQEWRQFEEFDNI  302 (474)
T ss_pred             HHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHH-HHhhCChhhhcCHHHhhH
Confidence            79999999999999999999998853  12  3777778654   4689999999999988 478887632122356677


Q ss_pred             hccCCCCCeEEEeeecCCCCccccccCCCCCC-CCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCC-
Q 048009          315 KHSDYSSGTTKINLAVDKLPQFQCCKLSHPDP-GPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDK-  392 (531)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~-  392 (531)
                      ..+.+ .++.++++.++++...+......+.. ......++.+..+                   ..+.+...-+...+ 
T Consensus       303 ~~l~~-~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~  362 (474)
T TIGR02732       303 YKLDA-VPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTAD-------------------ADFSCFADLALTSPD  362 (474)
T ss_pred             hcCCC-CCeEEEEEEeccccccccchhhhhcccccccccccccccC-------------------ccceeeehhhccCHH
Confidence            77777 68899999998744321000000000 0000000000000                   00001000001112 


Q ss_pred             CCCCCCceE-EEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCc-eeEEEecCcchHHHHhCCCCCcccc
Q 048009          393 TISPPGNHV-INLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSS-IIGYDMLTPPDLEREIGLTGGNIFH  470 (531)
Q Consensus       393 ~~ap~G~~~-l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~-i~~~~~~tp~~~~~~~~~~~G~~~~  470 (531)
                      .+.+.|... +.+.+...  .   ..+..  .++++.++++++|++++|.+++. ++...+   ..+.       .++|.
T Consensus       363 ~~~~~~~~~~l~~~~~~~--~---~~~~~--~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v---~~~~-------~a~~~  425 (474)
T TIGR02732       363 DYYKEGQGSLLQCVLTPG--D---PWMPE--SNEEIAKRVDKQVRALFPSSKNLKLTWSSV---VKLA-------QSLYR  425 (474)
T ss_pred             HHhccCCCeEEEEEEeCh--h---hhcCC--CHHHHHHHHHHHHHHhCccccCCceeEEEE---EEec-------Cceec
Confidence            123333332 33332111  0   01111  24899999999999999986543 221101   1111       11111


Q ss_pred             cCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCC--CCcCCc--hHHHHHHHHH
Q 048009          471 GAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPG--GGVMGA--PGRNAAGIVL  523 (531)
Q Consensus       471 ~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g--~g~~~~--sg~~aa~~i~  523 (531)
                      ..+...   ..||     ..+|+++|||+||||+.++  .++.+|  ||+.||+.|+
T Consensus       426 ~~pg~~---~~~P-----~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~  474 (474)
T TIGR02732       426 EAPGMD---PFRP-----DQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL  474 (474)
T ss_pred             cCCCCc---ccCC-----CCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence            111111   2466     7889999999999999653  244455  9999999874

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02487 zeta-carotene desaturase

Probab=99.97  E-value=2.9e-29  Score=253.01  Aligned_cols=453  Identities=15%  Similarity=0.157  Sum_probs=240.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGET   91 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~   91 (531)
                      +..+|+|||||++||++|+.|+++|++|+|+|+++.+||++.++....|+.+|.|.|++...++++++.    |+...+.
T Consensus        74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~  153 (569)
T PLN02487         74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL  153 (569)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence            457999999999999999999999999999999999999999876457999999999876666665544    5532221


Q ss_pred             hhh-hccchh----hhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcCh-hhH
Q 048009           92 WNE-VVEAKS----IIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQ-KDL  165 (531)
Q Consensus        92 ~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  165 (531)
                      ... +....+    ...+..... ..........++....       ..+.+++.....-  +...... +. ... ..+
T Consensus       154 ~~~~~~~~~~~~g~~~~~~~~~p-~~~pl~~~~~~l~~~~-------Ls~~dklr~~~~l--~~~~~~~-al-~~~~~~~  221 (569)
T PLN02487        154 VKDHTHTFVNKGGDVGELDFRFP-VGAPLHGIKAFLTTNQ-------LEPYDKARNALAL--ATSPVVR-AL-VDPDGAM  221 (569)
T ss_pred             ccccceeEEecCCEEeeeccCCC-CCchhhhHHHHHcCCC-------CCHHHHHhhcccc--cccchhh-hc-cCccccc
Confidence            110 000000    000000000 0000011111111111       0011111100000  0000000 00 000 001


Q ss_pred             HHHHHHHhccHHHHhhcccCCh-hHHHHHhhhhhhccCCCCCCCChHHHHHH-HHhhccCCCCCccccccCchHH-HHHH
Q 048009          166 VEFVDLLLSPASKVLNKWFETD-VLKATLATDAVIGTMSSVHTPGSGYVLLH-HVMGETDGNPGIWSYVEGGMGS-VSMA  242 (531)
Q Consensus       166 ~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gG~~~-l~~~  242 (531)
                      ..+......++.+|+.++..++ .+..++...........+...++.+.... .... .....+...+++||... |.+.
T Consensus       222 ~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~-~~~~~~~l~~~~Gg~~~~l~~p  300 (569)
T PLN02487        222 RDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFA-TKTEASLLRMLKGSPDVRLSGP  300 (569)
T ss_pred             cccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh-hcCCcceeeecCCCchHHHHHH
Confidence            1122334588899999888877 44445442222111122222222222111 1111 11222324489999995 9999


Q ss_pred             HHHHHHHcCcEEEcCcceeEEEecC--CC--ceeEEEe---CCCcEEEcCeEEecCChHhHHhhcCCCCCCChHHHHHhh
Q 048009          243 IGSAAREAGAHIVTRAEVSQLMIND--SG--RVNGVQL---ADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIK  315 (531)
Q Consensus       243 l~~~~~~~G~~i~~~~~V~~I~~~~--~g--~~~~V~~---~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i~  315 (531)
                      +++.++++|++|+++++|++|..+.  ++  ++++|++   .+++++.+|.||+|++++. +.+|+++..-.......+.
T Consensus       301 l~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~-~~~Llp~~~~~~~~~~~l~  379 (569)
T PLN02487        301 IAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPG-IKRLLPEQWREYEFFDNIY  379 (569)
T ss_pred             HHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHH-HHHhCCchhhccHHHhHHh
Confidence            9999999999999999999999873  13  3788888   3455789999999999987 5899977422223456777


Q ss_pred             ccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEE-EEeCCCCCCCC
Q 048009          316 HSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIE-MTIPSVLDKTI  394 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~d~~~  394 (531)
                      .+.+ ..++++++-++++...+......... ....|   +  +.   +.  +    -+ ...-+++. +...+..+- +
T Consensus       380 ~L~~-~pi~tv~L~~d~~v~~~~~~~~~r~l-~~~~g---~--~~---~~--~----~~-~~~~~f~~di~l~~~~~~-~  441 (569)
T PLN02487        380 KLVG-VPVVTVQLRYNGWVTEMQDLELSRQL-RRAAG---L--DN---LL--Y----SA-DADFSCFADLALTSPEDY-Y  441 (569)
T ss_pred             cCCC-eeEEEEEEEecccccccccccccccc-ccccc---c--cc---cc--c----cc-CCCcceEeeeecCCHHHH-c
Confidence            7766 67889999998754321000000000 00000   0  00   00  0    00 00001100 110100000 1


Q ss_pred             CCCCceEEEEEecc-ccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCc-eeEEEecCcchHHHHhCCCCCcccccC
Q 048009          395 SPPGNHVINLFIQY-TPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSS-IIGYDMLTPPDLEREIGLTGGNIFHGA  472 (531)
Q Consensus       395 ap~G~~~l~~~~~~-~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~-i~~~~~~tp~~~~~~~~~~~G~~~~~~  472 (531)
                      .+...+.+.+++.. .++.    .+.    .++++++++++|.+++|.+++. +....+   ..+.       .++|...
T Consensus       442 ~~~~g~~l~~vis~a~~~~----~~~----~~ei~~~~~~~L~~~~p~~~~~~v~~~~v---v~~~-------~at~~~~  503 (569)
T PLN02487        442 KEGEGSLIQAVLTPGDPYM----PLS----NDKIVEKVHKQVLELFPSSRGLEVTWSSV---VKIG-------QSLYREA  503 (569)
T ss_pred             ccCCceEEEEEEcCCcccc----CCC----HHHHHHHHHHHHHHhCcccccCceEEEEE---EEcc-------CceeccC
Confidence            11112344444321 1111    223    4899999999999999987653 332111   1111       1112111


Q ss_pred             CCccccccCCCCCCCCCCCCCCCCeeecCCCCCCC--CCcCCc--hHHHHHHHHHHHh
Q 048009          473 MGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPG--GGVMGA--PGRNAAGIVLQDL  526 (531)
Q Consensus       473 ~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g--~g~~~~--sg~~aa~~i~~~~  526 (531)
                      +...   ..||     ..+|+++|||+|||||.++  ..+.+|  ||..||+.|++..
T Consensus       504 pg~~---~~RP-----~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~  553 (569)
T PLN02487        504 PGMD---PFRP-----DQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAG  553 (569)
T ss_pred             CCcc---ccCC-----CCCCCCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence            1111   2567     7899999999999999654  233455  9999999998864

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.97  E-value=2.3e-29  Score=254.24  Aligned_cols=421  Identities=17%  Similarity=0.233  Sum_probs=230.6

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccchhh
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGETWNE   94 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~~~~   94 (531)
                      +|+|||||++||+||++|+++|++|+|+|+++++||++.+.....|+.+|.|.+++....|++++.    |+.....+..
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~   80 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRLQWKS   80 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccceeecC
Confidence            599999999999999999999999999999999999998875457899999998876666766553    5432211100


Q ss_pred             hc---cchh-hhHHH--HHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhhHHHH
Q 048009           95 VV---EAKS-IIVYA--IFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEF  168 (531)
Q Consensus        95 ~~---~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (531)
                      ..   ...+ ...+.  .+......+ .....++....      ...+.++..       +..... .....   .....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~-------~~~~~~-~~~~~---~~~~~  142 (453)
T TIGR02731        81 HSMIFNQPDKPGTFSRFDFPDIPAPF-NGVAAILRNND------MLTWPEKIK-------FAIGLL-PAIVR---GQKYV  142 (453)
T ss_pred             CceEEecCCCCcceeeccCCCCCCCH-HHHHHHhcCcC------CCCHHHHHH-------HHHHhH-HHHhc---Cccch
Confidence            00   0000 00000  000000000 00000000000      000011100       000000 00000   00112


Q ss_pred             HHHHhccHHHHhhcccCChhHHH-HHhh--hhhhccCCCCCCCChHHHH--HHHHhhccCCCCCc-cccccCc-hHHHHH
Q 048009          169 VDLLLSPASKVLNKWFETDVLKA-TLAT--DAVIGTMSSVHTPGSGYVL--LHHVMGETDGNPGI-WSYVEGG-MGSVSM  241 (531)
Q Consensus       169 ~~~~~~~~~~~l~~~~~~~~l~~-~~~~--~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~gG-~~~l~~  241 (531)
                      ..+...++.+|+.+....+.+.. ++..  .++.+  ..+...+..+.+  +...+.   ...+. ..+..|+ ++.+++
T Consensus       143 ~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~--~~p~~~S~~~~~~~l~~~~~---~~~g~~~~~~~g~~~~~l~~  217 (453)
T TIGR02731       143 EEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNF--INPDELSMTVVLTALNRFLQ---ERHGSKMAFLDGAPPERLCQ  217 (453)
T ss_pred             hhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHh---cCCCCeeEeecCCChHHHHH
Confidence            23356788888887555555443 3221  11111  122222222211  111111   11111 1133443 467999


Q ss_pred             HHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc-----EEEcCeEEecCChHhHHhhcCCCCCCChHHHHHhhc
Q 048009          242 AIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA-----QVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKH  316 (531)
Q Consensus       242 ~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~-----~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i~~  316 (531)
                      .|.+.++++|++|++|++|++|..++++++++|++.+|+     ++.||.||+|+++.. +.+|++...-.....+.+..
T Consensus       218 ~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~-~~~lL~~~~~~~~~~~~~~~  296 (453)
T TIGR02731       218 PIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI-FKLLLPQPWKQMPFFQKLNG  296 (453)
T ss_pred             HHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH-HHhhCchhhhcCHHHHHhhc
Confidence            999999999999999999999987554778889887765     789999999998876 67888653212345666777


Q ss_pred             cCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCCC
Q 048009          317 SDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISP  396 (531)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap  396 (531)
                      +++ .+++++++.++++...           +.  +.++. .+..                  ......+.+.. ...++
T Consensus       297 ~~~-~~~~~v~l~~~~~~~~-----------~~--~~~~~-~~~~------------------~~~~~~~s~~~-~~~~~  342 (453)
T TIGR02731       297 LEG-VPVINVHIWFDRKLTT-----------VD--HLLFS-RSPL------------------LSVYADMSETC-KEYAD  342 (453)
T ss_pred             CCC-CcEEEEEEEEccccCC-----------CC--ceeee-CCCc------------------ceeecchhhhC-hhhcC
Confidence            765 6889999999885311           01  12221 1110                  00000011111 12334


Q ss_pred             CCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCC------CCceeEEEecCcchHHHHhCCCCCcccc
Q 048009          397 PGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGF------SSSIIGYDMLTPPDLEREIGLTGGNIFH  470 (531)
Q Consensus       397 ~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~------~~~i~~~~~~tp~~~~~~~~~~~G~~~~  470 (531)
                      ++++++.+.+.  ...    .|.. ..+|++.+.++++|++++|+.      .+.+.+.++..|.+.  +...+ |    
T Consensus       343 ~~~~l~~~~~~--~~~----~~~~-~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~--~~~~p-g----  408 (453)
T TIGR02731       343 PDKSMLELVFA--PAA----DWIG-RSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSV--YKTTP-G----  408 (453)
T ss_pred             CCCeEEEEEec--Chh----hhhc-CCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCce--eccCC-C----
Confidence            55666665432  111    2211 135899999999999999852      123445556666552  21111 1    


Q ss_pred             cCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCC--CCcCCc--hHHHHHHHHH
Q 048009          471 GAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPG--GGVMGA--PGRNAAGIVL  523 (531)
Q Consensus       471 ~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g--~g~~~~--sg~~aa~~i~  523 (531)
                            . ...+|     ..++|++||||||+++..+  +++.+|  ||+.||+.|+
T Consensus       409 ------~-~~~~~-----~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~  453 (453)
T TIGR02731       409 ------R-QQYRP-----HQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV  453 (453)
T ss_pred             ------C-hhhCc-----cccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence                  0 01333     5678899999999999432  367787  9999999875

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.97  E-value=2.3e-28  Score=247.97  Aligned_cols=418  Identities=15%  Similarity=0.170  Sum_probs=225.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHcC--CcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccc
Q 048009           18 WDALVIGGGHNGLTAAAYLARAG--LSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGET   91 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G--~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~   91 (531)
                      .+|+|||||++||+||+.|+++|  ++|+|+|+++++||++++.. ..|+.+|.|++++....+.+++.    |+.....
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~   79 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVR-KDGFPIELGPESFLARKPSAPALVKELGLEDELV   79 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEe-eCCeEEecChHHhcCCcHHHHHHHHHcCCcccee
Confidence            47999999999999999999988  89999999999999999986 67999999998655555544433    4421110


Q ss_pred             hhh-----hccchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccC-CCcchhhhhhhhhhhhhHHHHHHHHHhcChhhH
Q 048009           92 WNE-----VVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQG-SSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDL  165 (531)
Q Consensus        92 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (531)
                      ...     +........++.  .          .+ ...+...... ...++..           ...+........   
T Consensus        80 ~~~~~~~~~~~~g~~~~~p~--~----------~~-~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~---  132 (451)
T PRK11883         80 ANTTGQSYIYVNGKLHPIPP--G----------TV-MGIPTSIAPFLFAGLVSP-----------IGKLRAAADLRP---  132 (451)
T ss_pred             cCCCCcceEEECCeEEECCC--C----------Ce-eccCCCchhhhcCCCCCH-----------HHHHHhhCcccC---
Confidence            000     000000000000  0          00 0000000000 0000000           000000000000   


Q ss_pred             HHHHHHHhccHHHHhhcccCChhHHHHHhhhhhhccCC-CCCCCChHHHH---H----------HHHhhcc-C---CCCC
Q 048009          166 VEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMS-SVHTPGSGYVL---L----------HHVMGET-D---GNPG  227 (531)
Q Consensus       166 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~-~~~~~~~~~~~---~----------~~~~~~~-~---~~~~  227 (531)
                      .........++.+++.+.+.....+.++... +.+.+. .+........+   .          ..+.... .   ....
T Consensus       133 ~~~~~~~~~s~~e~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (451)
T PRK11883        133 PRWKPGQDQSVGAFFRRRFGDEVVENLIEPL-LSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKG  211 (451)
T ss_pred             CCCCCCCCcCHHHHHHHhccHHHHHHHHHHh-hceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCC
Confidence            0000012345666666555544444433311 111111 11111111110   0          0000000 0   1123


Q ss_pred             ccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCC
Q 048009          228 IWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILP  307 (531)
Q Consensus       228 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~  307 (531)
                      .|.+++||++.+++.|.+.+.+.  +|+++++|++|..++ +.+ .|++.+|+++.||+||+|+++..+ .+++.+    
T Consensus       212 ~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~~-~~~-~v~~~~g~~~~~d~vI~a~p~~~~-~~l~~~----  282 (451)
T PRK11883        212 VFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKSG-DGY-EIVLSNGGEIEADAVIVAVPHPVL-PSLFVA----  282 (451)
T ss_pred             ceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEcC-CeE-EEEECCCCEEEcCEEEECCCHHHH-HHhccC----
Confidence            45578999999999998877543  899999999999876 544 478888988999999999888874 666543    


Q ss_pred             hHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeC
Q 048009          308 DDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIP  387 (531)
Q Consensus       308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (531)
                      +...+.++++++ .++.++++.++++...          .+... .+++..+.                 +.++..+.++
T Consensus       283 ~~~~~~~~~~~~-~~~~~v~l~~~~~~~~----------~~~~~-~~~~~~~~-----------------~~~~~~~~~~  333 (451)
T PRK11883        283 PPAFALFKTIPS-TSVATVALAFPESATN----------LPDGT-GFLVARNS-----------------DYTITACTWT  333 (451)
T ss_pred             hhHHHHHhCCCC-CceEEEEEEeccccCC----------CCCce-EEEecCCC-----------------CCcEEEEEeE
Confidence            334567778877 5677999999875211          01111 23332111                 1233456567


Q ss_pred             CCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCCCCCc
Q 048009          388 SVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGN  467 (531)
Q Consensus       388 s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~~~G~  467 (531)
                      +..+|..+|+|+.++.++.. .+.......|+    ++++.+.+++.|+++++ +........+.   +|..  ..+   
T Consensus       334 s~~~~~~~p~g~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~L~~~~g-~~~~~~~~~~~---rw~~--a~p---  399 (451)
T PRK11883        334 SKKWPHTTPEGKVLLRLYVG-RPGDEAVVDAT----DEELVAFVLADLSKVMG-ITGDPEFTIVQ---RWKE--AMP---  399 (451)
T ss_pred             cCcCCCCCCCCcEEEEEecC-CCCCchhccCC----HHHHHHHHHHHHHHHhC-CCCCceEEEEe---ecCc--cCC---
Confidence            77778888988877666532 22111111232    48899999999999874 33222222221   1221  111   


Q ss_pred             ccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCc--hHHHHHHHHHH
Q 048009          468 IFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVLQ  524 (531)
Q Consensus       468 ~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~~  524 (531)
                      .|+... ..+...+++     .... ++|||+||+|+. |.|++++  ||+.+|++|+.
T Consensus       400 ~~~~~~-~~~~~~l~~-----~l~~-~~~l~~aG~~~~-g~~i~~av~sg~~~a~~i~~  450 (451)
T PRK11883        400 QYGVGH-IERVAELRA-----GLPH-YPGLYVAGASFE-GVGLPDCIAQAKRAAARLLA  450 (451)
T ss_pred             CCCccH-HHHHHHHHH-----hhhh-CCCEEEECcccC-CccHHHHHHHHHHHHHHHHh
Confidence            111111 011111122     1122 679999999986 7789988  99999999975

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.96  E-value=2.6e-27  Score=228.44  Aligned_cols=416  Identities=18%  Similarity=0.247  Sum_probs=232.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHcC--CcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccc
Q 048009           18 WDALVIGGGHNGLTAAAYLARAG--LSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGET   91 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G--~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~   91 (531)
                      .+|+|||||++||+||++|+|++  .+|+|||+++++||.+.|.. .+||.||.|++.+....+.+++.    |++..+.
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~-~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~   79 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVK-IDGFLFERGPHHFLARKEEILDLIKELGLEDKLL   79 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEe-eCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence            47999999999999999999999  99999999999999999985 89999999998765544444443    5532222


Q ss_pred             hhhhccchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhhHHHHHHH
Q 048009           92 WNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDL  171 (531)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (531)
                      +....     ..|..+.+.+.++           +...+...-.... .     ...-....+.......     .....
T Consensus        80 ~~~~~-----~~~i~~~gkl~p~-----------P~~~i~~ip~~~~-~-----~~~~~~~~~~~~~~~~-----~~~~~  132 (444)
T COG1232          80 WNSTA-----RKYIYYDGKLHPI-----------PTPTILGIPLLLL-S-----SEAGLARALQEFIRPK-----SWEPK  132 (444)
T ss_pred             cCCcc-----cceEeeCCcEEEC-----------CccceeecCCccc-c-----chhHHHHHHHhhhccc-----CCCCC
Confidence            11000     0000000000000           0000000000000 0     0000000000000000     00001


Q ss_pred             HhccHHHHhhcccCChhHHHHHhh--hhhhccCCCCCCCChH------------HH-HHHHHhhc-c---CCCCCccccc
Q 048009          172 LLSPASKVLNKWFETDVLKATLAT--DAVIGTMSSVHTPGSG------------YV-LLHHVMGE-T---DGNPGIWSYV  232 (531)
Q Consensus       172 ~~~~~~~~l~~~~~~~~l~~~~~~--~~~~g~~~~~~~~~~~------------~~-~~~~~~~~-~---~~~~~~~~~~  232 (531)
                      ...++.+|+.++|.++.+..++..  .++.+.  ..+..+..            +. ++...... .   ....+.+.++
T Consensus       133 ~d~sv~~f~r~~fG~ev~~~~~~pll~giy~~--~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~  210 (444)
T COG1232         133 QDISVGEFIRRRFGEEVVERFIEPLLEGIYAG--DADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYL  210 (444)
T ss_pred             CCcCHHHHHHHHHhHHHHHHHHHHHhhchhcC--CHHHhhHHHhcchhhhhhhhhcchhhhhhhccCccccccccccccc
Confidence            223455555555555544443331  111111  00000000            00 00000000 0   0112456688


Q ss_pred             cCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHHHH
Q 048009          233 EGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFIL  312 (531)
Q Consensus       233 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~  312 (531)
                      +||+++|.+++++.++..   |+++++|++|..+. .. ..+...+|.++.||.||+|+.++. +..++++    ....+
T Consensus       211 ~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~~-~~-~~~~~~~g~~~~~D~VI~t~p~~~-l~~ll~~----~~~~~  280 (444)
T COG1232         211 RGGLQSLIEALAEKLEAK---IRTGTEVTKIDKKG-AG-KTIVDVGGEKITADGVISTAPLPE-LARLLGD----EAVSK  280 (444)
T ss_pred             CccHHHHHHHHHHHhhhc---eeecceeeEEEEcC-Cc-cEEEEcCCceEEcceEEEcCCHHH-HHHHcCC----cchhh
Confidence            999999999999988765   99999999999985 33 346778888899999999887777 5888876    22344


Q ss_pred             HhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCC
Q 048009          313 SIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDK  392 (531)
Q Consensus       313 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~  392 (531)
                      .+.++.+ .++.++.+++++....         ..++.. .+.+.++.                  .....++++|++.|
T Consensus       281 ~~~~~~~-~s~~~vv~~~~~~~~~---------~~~~~~-g~~iad~~------------------~~~~a~~~~S~~~p  331 (444)
T COG1232         281 AAKELQY-TSVVTVVVGLDEKDNP---------ALPDGY-GLLIADDD------------------PYILAITFHSNKWP  331 (444)
T ss_pred             hhhhccc-cceEEEEEEecccccc---------CCCCce-EEEEecCC------------------CcceeEEEecccCC
Confidence            5566666 5667777778774211         112332 33442221                  11456889999999


Q ss_pred             CCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCCCCCcccccC
Q 048009          393 TISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGA  472 (531)
Q Consensus       393 ~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~~~G~~~~~~  472 (531)
                      ...|+|++++++... .+..    .|......|++.+.+++.|.++++...+.+ ...+.   .|  ....|+..+   .
T Consensus       332 ~~~p~g~~ll~~~~~-~~g~----~~~~~~~dee~~~~~l~~L~~~~~~~~~~~-~~~v~---r~--~~~~PqY~v---G  397 (444)
T COG1232         332 HEAPEGKTLLRVEFG-GPGD----ESVSTMSDEELVAAVLDDLKKLGGINGDPV-FVEVT---RW--KYAMPQYEV---G  397 (444)
T ss_pred             CCCCCCcEEEEEEee-cCCC----cchhccCHHHHHHHHHHHHHHHcCcCcchh-heeee---ec--cccCCccch---h
Confidence            999999999998763 3322    222222348999999999999998655433 11110   11  123444322   2


Q ss_pred             CCccccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCc--hHHHHHHHHH
Q 048009          473 MGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVL  523 (531)
Q Consensus       473 ~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~  523 (531)
                      +. +.....|.     ...+-.+|++.+|.|-- |.|++.|  +|..||++++
T Consensus       398 ~~-~~~~~ir~-----~l~~~y~gi~~~G~~~~-g~g~~d~I~~g~~aa~~l~  443 (444)
T COG1232         398 HL-DRLEPIRA-----ALKGAYPGIKSVGRYGE-GVGLPDCIAAGKEAAEQLL  443 (444)
T ss_pred             HH-HHHHHHHH-----hhccccCCeEEeccCCC-CCCchHHHHHHHHHHHHhh
Confidence            11 11111222     22223479999999984 4689887  8999999875

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.96  E-value=3e-27  Score=240.04  Aligned_cols=419  Identities=15%  Similarity=0.164  Sum_probs=232.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHc----CCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Cccc
Q 048009           17 KWDALVIGGGHNGLTAAAYLARA----GLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRI   88 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~----G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~   88 (531)
                      +.||+|||||++||+||++|+++    |++|+|+|+++++||++++.. ..|+.+|.|++++....+.+++.    |+..
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~-~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~   80 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVK-EDGYLIERGPDSFLERKKSAPDLVKDLGLEH   80 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEe-eCCEEEecCccccccCChHHHHHHHHcCCCc
Confidence            47999999999999999999999    999999999999999999986 67999999998877766665544    5432


Q ss_pred             ccchhhh--c--cchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhh
Q 048009           89 GETWNEV--V--EAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKD  164 (531)
Q Consensus        89 ~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (531)
                      .......  .  .......+        ++......++...       ...+.++....+       .    ......  
T Consensus        81 ~~~~~~~~~~~~~~~~g~~~--------~~p~~~~~~~~~~-------~~~~~~~~~~~~-------~----~~~~~~--  132 (462)
T TIGR00562        81 VLVSDATGQRYVLVNRGKLM--------PVPTKIAPFVKTG-------LFSLGGKLRAGM-------D----FIRPAS--  132 (462)
T ss_pred             ccccCCCCceEEEECCCcee--------cCCCChHHHhcCC-------CCCchhhHHhhh-------h----hccCCC--
Confidence            1110000  0  00000000        0000000000000       000000000000       0    000000  


Q ss_pred             HHHHHHHHhccHHHHhhcccCChhHHHHHhhhhhhccCC-CCCCCChHHHH-------------HHHHhhc---------
Q 048009          165 LVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMS-SVHTPGSGYVL-------------LHHVMGE---------  221 (531)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~-~~~~~~~~~~~-------------~~~~~~~---------  221 (531)
                           .....++.+++.+.+..+....++... +.+.+. .+........+             +..+...         
T Consensus       133 -----~~~d~s~~e~l~~~~g~~~~~~~~~p~-~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  206 (462)
T TIGR00562       133 -----PGKDESVEEFVRRRFGDEVVENLIEPL-LSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGL  206 (462)
T ss_pred             -----CCCCcCHHHHHHHhcCHHHHHHHHHHH-hcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccc
Confidence                 001245555555555443333332210 001000 01111111000             0000000         


Q ss_pred             --cCCCCCc-cccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHh
Q 048009          222 --TDGNPGI-WSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFM  298 (531)
Q Consensus       222 --~~~~~~~-~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~  298 (531)
                        .....+. +..+.||++.|++.+++.+..  ++|+++++|++|..++ +++ .|++++|+++.||+||+|+++.. +.
T Consensus       207 ~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~-~~~-~v~~~~g~~~~ad~VI~t~P~~~-~~  281 (462)
T TIGR00562       207 QLTAKKQGQDFQTLATGLETLPEEIEKRLKL--TKVYKGTKVTKLSHRG-SNY-TLELDNGVTVETDSVVVTAPHKA-AA  281 (462)
T ss_pred             cccccccCCceEecchhHHHHHHHHHHHhcc--CeEEcCCeEEEEEecC-CcE-EEEECCCcEEEcCEEEECCCHHH-HH
Confidence              0001121 447899999999999988752  7899999999999876 554 47888888899999999888887 47


Q ss_pred             hcCCCCCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCC
Q 048009          299 DLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSR  378 (531)
Q Consensus       299 ~ll~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (531)
                      .|+++  +++...+.+.+++| .++.++.+.++++. +        +..+..  ..++.+..                ..
T Consensus       282 ~ll~~--~~~~~~~~l~~l~~-~~~~~v~l~~~~~~-~--------~~~~~~--~g~l~~~~----------------~~  331 (462)
T TIGR00562       282 GLLSE--LSNSASSHLDKIHS-PPVANVNLGFPEGS-V--------DGELEG--FGFLISRS----------------SK  331 (462)
T ss_pred             HHhcc--cCHHHHHHHhcCCC-CceEEEEEEEchHH-c--------CCCCCc--eEEEccCC----------------CC
Confidence            88765  67778888998988 67888889887532 1        000112  22331110                01


Q ss_pred             CCeEEEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHH
Q 048009          379 RPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLE  458 (531)
Q Consensus       379 ~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~  458 (531)
                      .+.+.+.+.|...|..+|+|+.++++++... ..  ...++.  ..+++.+.+++.|.++++ +...+....+   ..|.
T Consensus       332 ~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~-~~--~~~~~~--~~ee~~~~v~~~L~~~~g-i~~~p~~~~v---~rw~  402 (462)
T TIGR00562       332 FAILGCIFTSKLFPNRAPPGKTLLTAYIGGA-TD--ESIVDL--SENEIINIVLRDLKKVLN-INNEPEMLCV---TRWH  402 (462)
T ss_pred             CceEEEEEEccccCCcCCCCcEEEEEEeCCC-CC--ccccCC--CHHHHHHHHHHHHHHHhC-CCCCCcEEEE---eEcc
Confidence            1334455566667888898988887765321 11  111121  248899999999999885 4432322221   1121


Q ss_pred             HHhCCCCCcccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCc--hHHHHHHHHHHHh
Q 048009          459 REIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVLQDL  526 (531)
Q Consensus       459 ~~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~~~~  526 (531)
                        ...|...+.+    ......+++     ...++.+|||+||+|.. |.++++|  ||+.+|++|++.+
T Consensus       403 --~a~P~~~~g~----~~~~~~i~~-----~l~~~~~~l~l~G~~~~-g~~i~~~i~sg~~~a~~~~~~~  460 (462)
T TIGR00562       403 --RAIPQYHVGH----DQRLKEARE-----LLESAYPGVFLTGNSFE-GVGIPDCIDQGKAAASDVLTFL  460 (462)
T ss_pred             --ccCCCCCCCh----HHHHHHHHH-----HHHhhCCCEEEeccccC-CCcHHHHHHHHHHHHHHHHHhh
Confidence              1122211110    000000111     01123479999999985 6788887  9999999998765

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.96  E-value=1.1e-26  Score=235.37  Aligned_cols=426  Identities=15%  Similarity=0.189  Sum_probs=226.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHc------CCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccc
Q 048009           18 WDALVIGGGHNGLTAAAYLARA------GLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTR   87 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~------G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~   87 (531)
                      .+|+|||||++||+||+.|+++      |++|+|+|+++++||++.|.. ..|+.+|.|++++....+.+++.    |+.
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~-~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~   80 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE-EKDFIMESGADSIVARNEHVMPLVKDLNLE   80 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe-eCCEEEecCcHHHhcCCHHHHHHHHHcCCc
Confidence            4799999999999999999986      379999999999999999986 67899999998876666665544    553


Q ss_pred             cccchhhhccchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCC-CcchhhhhhhhhhhhhH--HHHHHHHHhcChhh
Q 048009           88 IGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGS-SSYSHQFKNKIRNSAFW--AHCLRRAISLGQKD  164 (531)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  164 (531)
                      .........     ..+....+.          +. ..+....... ..+........  ....  .+.+........ .
T Consensus        81 ~~~~~~~~~-----~~~~~~~~~----------~~-~~p~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~  141 (463)
T PRK12416         81 EEMVYNETG-----ISYIYSDNT----------LH-PIPSDTIFGIPMSVESLFSSTL--VSTKGKIVALKDFITKNK-E  141 (463)
T ss_pred             cceecCCCC-----ceEEEECCe----------EE-ECCCCCeecCCCChHHhhcCCc--CCHHHHHHhhhhhccCCC-C
Confidence            221110000     000000000          00 0000000000 00000000000  0000  000000000000 0


Q ss_pred             HHHHHHHHhccHHHHhhcccCChhHHHHHhhh--hhhccCCCCCCCChHH--H-H----------HHHHh---hcc-CCC
Q 048009          165 LVEFVDLLLSPASKVLNKWFETDVLKATLATD--AVIGTMSSVHTPGSGY--V-L----------LHHVM---GET-DGN  225 (531)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--~~~g~~~~~~~~~~~~--~-~----------~~~~~---~~~-~~~  225 (531)
                           .....++.+|+.+.+..+..+.++...  ++.+.  .+.......  . +          +..+.   ... ...
T Consensus       142 -----~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~--~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  214 (463)
T PRK12416        142 -----FTKDTSLALFLESFLGKELVERQIAPVLSGVYSG--KLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAG  214 (463)
T ss_pred             -----CCCCCCHHHHHHHhcCHHHHHHHHHHHhcccccC--CcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCC
Confidence                 012456777777666555444444311  11111  111111110  0 0          00000   000 011


Q ss_pred             CCccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCC
Q 048009          226 PGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNI  305 (531)
Q Consensus       226 ~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~  305 (531)
                      ...+.+++||++.|+++|++.+.+  ++|+++++|++|+.++ +++ .|++.+|+++.||+||+|+++.. +.+|++.+.
T Consensus       215 ~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~-~~~-~v~~~~g~~~~ad~VI~a~p~~~-~~~ll~~~~  289 (463)
T PRK12416        215 NKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQG-DRY-EISFANHESIQADYVVLAAPHDI-AETLLQSNE  289 (463)
T ss_pred             CCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEcC-CEE-EEEECCCCEEEeCEEEECCCHHH-HHhhcCCcc
Confidence            123457899999999999998865  6899999999999887 554 58888888899999999887666 578876533


Q ss_pred             CChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEE
Q 048009          306 LPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMT  385 (531)
Q Consensus       306 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      +    ...+.++.+ .++.+++++++.++...         .+...|.+.. .+.                 ......+.
T Consensus       290 l----~~~~~~~~~-~~~~~v~l~~~~~~~~~---------~~~g~G~l~~-~~~-----------------~~~~~~~~  337 (463)
T PRK12416        290 L----NEQFHTFKN-SSLISIYLGFDILDEQL---------PADGTGFIVT-ENS-----------------DLHCDACT  337 (463)
T ss_pred             h----hHHHhcCCC-CceEEEEEEechhhcCC---------CCCceEEEee-CCC-----------------CCeEEEEE
Confidence            3    334566666 68899999998643110         0112222222 110                 00112234


Q ss_pred             eCCCCCCCCCCCCceEEEEEecc-ccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCCC
Q 048009          386 IPSVLDKTISPPGNHVINLFIQY-TPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLT  464 (531)
Q Consensus       386 ~~s~~d~~~ap~G~~~l~~~~~~-~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~~  464 (531)
                      ++|...+..+|+++.++.+++.. .+....-.+++    .+++.+.++++|++++. +........+   ..|..  ..|
T Consensus       338 ~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----dee~~~~~~~~L~~~lG-~~~~p~~~~v---~~W~~--a~P  407 (463)
T PRK12416        338 WTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYS----EEELVRVALYDIEKSLG-IKGEPEVVEV---TNWKD--LMP  407 (463)
T ss_pred             eecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCC----HHHHHHHHHHHHHHHhC-CCCCceEEEE---EEccc--cCC
Confidence            55555566666666555555321 11110000222    48899999999999884 3333322222   12221  233


Q ss_pred             CCcccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCc--hHHHHHHHHHHHhh
Q 048009          465 GGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVLQDLK  527 (531)
Q Consensus       465 ~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~~~~~  527 (531)
                      .+.+.+.. ...+   +++     ....+.+|||+||++.. |.++++|  ||+.||++|++.++
T Consensus       408 ~y~~~~~~-~~~~---~~~-----~l~~~~~~l~~aG~~~~-g~~i~~ai~sg~~aA~~i~~~~~  462 (463)
T PRK12416        408 KYHLEHNQ-AVQS---LQE-----KMMNLYPNIYLAGASYY-GVGIGACIGNGKNTANEIIATLN  462 (463)
T ss_pred             CcCcCHHH-HHHH---HHH-----HHHhhCCCeEEeccccc-cccHHHHHHHHHHHHHHHHHHhh
Confidence            33221100 0000   111     11223589999999975 7789888  99999999997653

>PRK07208 hypothetical protein; Provisional

Probab=99.96  E-value=4e-26  Score=232.52  Aligned_cols=420  Identities=15%  Similarity=0.156  Sum_probs=228.0

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Cccccc
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGE   90 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~   90 (531)
                      +.+.||+|||||++||+||+.|+++|++|+|+|+++++||++.+.. ..|+.+|.|++++....+.+++.    ++...+
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~-~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~~~~   80 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVT-YKGNRFDIGGHRFFSKSPEVMDLWNEILPDDDF   80 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeec-cCCceEccCCceeccCCHHHHHHHHHhcCCCcc
Confidence            3568999999999999999999999999999999999999999875 67899999998766555554443    211000


Q ss_pred             chh-h---hccchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhhHH
Q 048009           91 TWN-E---VVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLV  166 (531)
Q Consensus        91 ~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (531)
                      ... .   +........++                     ..       ..+.+. ...... ..+............  
T Consensus        81 ~~~~~~~~~~~~g~~~~~p---------------------~~-------~~~~l~-~~~~~~-~~~~~~~~~~~~~~~--  128 (479)
T PRK07208         81 LLRPRLSRIYYRGKFFDYP---------------------LK-------AFDALK-NLGLWR-TAKCGASYLKARLRP--  128 (479)
T ss_pred             ccccccceEEECCEEecCC---------------------cc-------hhHHHH-hCCHhH-HHHHHHHHHHHhcCC--
Confidence            000 0   00000000000                     00       000000 000000 000000000000000  


Q ss_pred             HHHHHHhccHHHHhhcccCChhHHHHHhh--hhhhccCCCCCCCChH-----------HHHHHHHhhc-----------c
Q 048009          167 EFVDLLLSPASKVLNKWFETDVLKATLAT--DAVIGTMSSVHTPGSG-----------YVLLHHVMGE-----------T  222 (531)
Q Consensus       167 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~~g~~~~~~~~~~~-----------~~~~~~~~~~-----------~  222 (531)
                         .....++.+|+.+.+..+..+.++..  ..+.+.  .+...+..           ...+...+..           .
T Consensus       129 ---~~~~~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (479)
T PRK07208        129 ---RKEEDSFEDWVINRFGRRLYSTFFKGYTEKVWGV--PCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVE  203 (479)
T ss_pred             ---CCCCCCHHHHHHHhhCHHHHHHHHHHhhhhhhCC--ChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCcc
Confidence               00235666666665555544444331  111111  11111111           1011101100           0


Q ss_pred             CCCCCccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CCc--EEEcCeEEecCChHhHHh
Q 048009          223 DGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DGA--QVHSSIVLSNATPYKTFM  298 (531)
Q Consensus       223 ~~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~--~~~ad~VV~aa~~~~~~~  298 (531)
                      ......+.+|+||++.|+++|.+.+++.|++|++|++|++|..++++.+..+...  +|+  ++.||+||+|+++..+ .
T Consensus       204 ~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l-~  282 (479)
T PRK07208        204 TSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLREL-V  282 (479)
T ss_pred             ccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHH-H
Confidence            0011345689999999999999999999999999999999999873334444442  453  5889999999888875 5


Q ss_pred             hcCCCCCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCC
Q 048009          299 DLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSR  378 (531)
Q Consensus       299 ~ll~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (531)
                      +++++ .+++...+.++.+++ .+++++++.+++++..           +.+  .+++.+...                 
T Consensus       283 ~~l~~-~~~~~~~~~~~~l~~-~~~~~v~l~~~~~~~~-----------~~~--~~~~~~~~~-----------------  330 (479)
T PRK07208        283 AALDP-PPPPEVRAAAAGLRY-RDFITVGLLVKELNLF-----------PDN--WIYIHDPDV-----------------  330 (479)
T ss_pred             HhcCC-CCCHHHHHHHhCCCc-ceeEEEEEEecCCCCC-----------CCc--eEEecCCCC-----------------
Confidence            66653 367777777888877 4688999999875422           112  344421110                 


Q ss_pred             CCeEEEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHH
Q 048009          379 RPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLE  458 (531)
Q Consensus       379 ~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~  458 (531)
                       ..-.+..++..+|..+|+|++ ..+.+.+..+. ....|..  .++++.+.+++.|+++.+.-.+.++...+..   ++
T Consensus       331 -~~~r~~~~~~~~~~~~p~g~~-~~l~~~~~~~~-~~~~~~~--~deel~~~~~~~L~~l~~~~~~~~~~~~v~r---~~  402 (479)
T PRK07208        331 -KVGRLQNFNNWSPYLVPDGRD-TWLGLEYFCFE-GDDLWNM--SDEDLIALAIQELARLGLIRPADVEDGFVVR---VP  402 (479)
T ss_pred             -ccceecccccCCcccCCCCCc-eEEEEEEEccC-CCccccC--CHHHHHHHHHHHHHHcCCCChhheeEEEEEE---ec
Confidence             000133445667888999886 22221111111 1123433  2478999999999997441144444433211   11


Q ss_pred             HHhCCCCCcccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCC-CCCCCcCCc--hHHHHHHHHHHH
Q 048009          459 REIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGT-HPGGGVMGA--PGRNAAGIVLQD  525 (531)
Q Consensus       459 ~~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~-~~g~g~~~~--sg~~aa~~i~~~  525 (531)
                        ...|.....+. ....   ..+      ...++.+|||++|... +....+.++  ||..+|+.|+..
T Consensus       403 --~a~P~y~~~~~-~~~~---~~~------~~~~~~~~l~laGr~~~~~~~~~d~a~~sg~~~a~~i~~~  460 (479)
T PRK07208        403 --KAYPVYDGTYE-RNVE---IIR------DLLDHFPNLHLVGRNGMHRYNNQDHSMLTAMLAVENIIAG  460 (479)
T ss_pred             --CcccCCCchHH-HHHH---HHH------HHHHhcCCceeeccccccccCChhHHHHHHHHHHHHHhcC
Confidence              11121111100 0000   011      1224568999999776 333455555  999999998765

>PLN02576 protoporphyrinogen oxidase

Probab=99.95  E-value=2.3e-25  Score=227.95  Aligned_cols=431  Identities=14%  Similarity=0.106  Sum_probs=226.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHc-CCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc---Ccccccc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARA-GLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC---GTRIGET   91 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~-G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~---gl~~~~~   91 (531)
                      .++||+|||||++||+||++|+++ |++|+|+|+++++||++.|.. ..|+.+|.|++++....+.+...   |+.....
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~gl~~~~~   89 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVS-EDGFIWEEGPNSFQPSDPELTSAVDSGLRDDLV   89 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEec-cCCeEEecCCchhccCcHHHHHHHHcCChhhee
Confidence            468999999999999999999999 999999999999999999986 67999999998876555544322   4321110


Q ss_pred             hhh--hc--cchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhhHHH
Q 048009           92 WNE--VV--EAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVE  167 (531)
Q Consensus        92 ~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (531)
                      +..  ..  ...+...+.        +......++..       ....+.+++.           ............   
T Consensus        90 ~~~~~~~~~~~~~g~~~~--------~p~~~~~~~~~-------~~~~~~~~~~-----------~~~~~~~~~~~~---  140 (496)
T PLN02576         90 FPDPQAPRYVVWNGKLRP--------LPSNPIDLPTF-------DLLSAPGKIR-----------AGLGAFGWKRPP---  140 (496)
T ss_pred             cCCCCceEEEEECCEEEE--------cCCChHHhcCc-------CcCChhHHHH-----------HhHHHhhccCCC---
Confidence            000  00  000000000        00000000000       0000000000           000000000000   


Q ss_pred             HHHHHhccHHHHhhcccCChhHHHHHhhh--hhhccCCCCCCCChHHH-------------HH----HHHhhcc------
Q 048009          168 FVDLLLSPASKVLNKWFETDVLKATLATD--AVIGTMSSVHTPGSGYV-------------LL----HHVMGET------  222 (531)
Q Consensus       168 ~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--~~~g~~~~~~~~~~~~~-------------~~----~~~~~~~------  222 (531)
                       ......++.+|+.+.+..+..+.++...  +..+.  .+...+....             ++    .......      
T Consensus       141 -~~~~~~sv~~~l~~~~g~~~~~~~~~p~~~~~~~~--~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~  217 (496)
T PLN02576        141 -PPGREESVGEFVRRHLGDEVFERLIDPFVSGVYAG--DPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPE  217 (496)
T ss_pred             -CCCCCCcHHHHHHHhcCHHHHHHHHHHHhCceecC--CHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhccccccc
Confidence             0012356677777666555554444311  11111  1111111100             00    0000000      


Q ss_pred             ------C-CCCCccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CCc-EEEcCeEEecCC
Q 048009          223 ------D-GNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DGA-QVHSSIVLSNAT  292 (531)
Q Consensus       223 ------~-~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~-~~~ad~VV~aa~  292 (531)
                            . ........++||++.|+++|++.+.+  ++|++|++|++|+.++ ++.+.|++.  +|+ ++.||+||+|++
T Consensus       218 ~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~l~~--~~i~l~~~V~~I~~~~-~~~~~v~~~~~~g~~~~~ad~VI~a~P  294 (496)
T PLN02576        218 PRDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGK--DKVKLNWKVLSLSKND-DGGYSLTYDTPEGKVNVTAKAVVMTAP  294 (496)
T ss_pred             ccccccccccCCeeEeccchHHHHHHHHHHhhCc--CcEEcCCEEEEEEECC-CCcEEEEEecCCCceeEEeCEEEECCC
Confidence                  0 00111236799999999999876521  6899999999999877 441234443  553 699999999887


Q ss_pred             hHhHHhhcCCCCCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHH
Q 048009          293 PYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAV  372 (531)
Q Consensus       293 ~~~~~~~ll~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (531)
                      +.. +..++++  .++...+.+.+++| .++.++++.++++. +..  ....+....  +.-++...             
T Consensus       295 ~~~-l~~ll~~--~~~~~~~~l~~~~~-~~~~~v~l~~~~~~-~~~--~~~~~~~~~--~~g~l~~~-------------  352 (496)
T PLN02576        295 LYV-VSEMLRP--KSPAAADALPEFYY-PPVAAVTTSYPKEA-VKR--ERLIDGPLE--GFGQLHPR-------------  352 (496)
T ss_pred             HHH-HHHHhcc--cCHHHHHHhccCCC-CceEEEEEEEchHH-ccc--ccccCCCCC--ceEEEccC-------------
Confidence            777 5777764  56667888888888 67788888887632 110  000000011  11111100             


Q ss_pred             cCCCCCCCeEEEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCC-CceeEEEe
Q 048009          373 NGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFS-SSIIGYDM  451 (531)
Q Consensus       373 ~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-~~i~~~~~  451 (531)
                         ....+.+.+.+.+...|.++|+++..+++++.....   ..-|+.  .++++.+.+++.|.++++.-. .......+
T Consensus       353 ---~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~---~~~~~~--s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~  424 (496)
T PLN02576        353 ---KQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRN---TGIASA--SEEELVEAVDRDLRKLLLKPGAPPPKVVGV  424 (496)
T ss_pred             ---CCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCC---cccccC--CHHHHHHHHHHHHHHHhCCCCCCCCcEEEE
Confidence               011133445556666788888887777666432111   111211  248899999999999886321 11111111


Q ss_pred             cCcchHHHHhCCCCCcccccCCCccccccCCCCCCCCCCCCCC--CCeeecCCCCCCCCCcCCc--hHHHHHHHHHHHhh
Q 048009          452 LTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPL--QGLYMCGSGTHPGGGVMGA--PGRNAAGIVLQDLK  527 (531)
Q Consensus       452 ~tp~~~~~~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~--~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~~~~~  527 (531)
                         ..|.  ...|.....+.. ....   .+      ......  +|||+||+|+. |.++++|  ||+.+|++|++.+.
T Consensus       425 ---~~w~--~a~P~~~~g~~~-~~~~---~~------~~l~~~~~~~l~~aG~~~~-g~~i~~ai~sg~~aA~~i~~~~~  488 (496)
T PLN02576        425 ---RVWP--KAIPQYLLGHLD-VLEA---AE------KMEKDLGLPGLFLGGNYRG-GVALGKCVESGYEAADLVISYLE  488 (496)
T ss_pred             ---eEcC--cccCCCCcCHHH-HHHH---HH------HHHHhcCCCCEEEeccccC-CccHHHHHHHHHHHHHHHHHHHh
Confidence               1122  112222111100 0000   00      000112  69999999996 6789987  99999999988764


Q ss_pred             h
Q 048009          528 K  528 (531)
Q Consensus       528 ~  528 (531)
                      .
T Consensus       489 ~  489 (496)
T PLN02576        489 S  489 (496)
T ss_pred             h
Confidence            3

>PLN02268 probable polyamine oxidase

Probab=99.94  E-value=5.8e-25  Score=221.16  Aligned_cols=234  Identities=16%  Similarity=0.144  Sum_probs=139.5

Q ss_pred             cccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhh-cC-CCCCCCh
Q 048009          231 YVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMD-LV-PGNILPD  308 (531)
Q Consensus       231 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~-ll-~~~~~~~  308 (531)
                      ++.+|+++++++|.+     +++|++|++|++|..++ +.+. |++.+|+++.||+||+|+++.. +.+ ++ ..+.+|+
T Consensus       195 ~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~~-~~v~-v~~~~g~~~~ad~VIva~P~~~-l~~~~i~f~p~lp~  266 (435)
T PLN02268        195 LMVRGYDPVINTLAK-----GLDIRLNHRVTKIVRRY-NGVK-VTVEDGTTFVADAAIIAVPLGV-LKANIIKFEPELPE  266 (435)
T ss_pred             eecCCHHHHHHHHhc-----cCceeCCCeeEEEEEcC-CcEE-EEECCCcEEEcCEEEEecCHHH-HhcCcceecCCCCH
Confidence            678899999999854     56799999999999877 5554 8888888899999999887776 343 22 2356888


Q ss_pred             HHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCC
Q 048009          309 DFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPS  388 (531)
Q Consensus       309 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  388 (531)
                      ...+.++++.| ....++++.++++. |.       +  ....|  .+.+.                  .....+.... 
T Consensus       267 ~~~~ai~~~~~-g~~~Kv~l~f~~~f-w~-------~--~~~~g--~~~~~------------------~~~~~~~~~~-  314 (435)
T PLN02268        267 WKEEAISDLGV-GIENKIALHFDSVF-WP-------N--VEFLG--VVAPT------------------SYGCSYFLNL-  314 (435)
T ss_pred             HHHHHHHhCCc-cceeEEEEEeCCCC-CC-------C--Cceee--ccCCC------------------CCCceEEEec-
Confidence            88889999887 67889999998742 21       1  01111  11000                  0011111111 


Q ss_pred             CCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCCCCCcc
Q 048009          389 VLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNI  468 (531)
Q Consensus       389 ~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~~~G~~  468 (531)
                           ..+.|+.++++++.. +...   .+.. ...+++.+.+++.|.+++|...+.+....    ..|.... ...|+.
T Consensus       315 -----~~~~g~~~l~~~~~g-~~a~---~~~~-~~~~e~~~~v~~~L~~~~~~~~~p~~~~~----~~W~~dp-~~~G~~  379 (435)
T PLN02268        315 -----HKATGHPVLVYMPAG-RLAR---DIEK-LSDEAAANFAMSQLKKMLPDATEPVQYLV----SRWGSDP-NSLGCY  379 (435)
T ss_pred             -----ccCCCCCEEEEEecc-HHHH---HHHh-CCHHHHHHHHHHHHHHHcCCCCCccEEEe----cccCCCC-CCCccC
Confidence                 112355666665432 1110   1111 12378999999999999985433222221    2232211 112221


Q ss_pred             cccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCC--CCcCCc--hHHHHHHHHHHHh
Q 048009          469 FHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPG--GGVMGA--PGRNAAGIVLQDL  526 (531)
Q Consensus       469 ~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g--~g~~~~--sg~~aa~~i~~~~  526 (531)
                      ....  +.+.....+     ..+.|+.+|||||+.+...  +.+.||  ||..||++|+..+
T Consensus       380 ~~~~--~g~~~~~~~-----~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l  434 (435)
T PLN02268        380 SYDL--VGKPHDLYE-----RLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL  434 (435)
T ss_pred             CCCC--CCCCHHHHH-----HHhCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            1111  111100111     3456788999999999652  456788  9999999998753

>PLN02676 polyamine oxidase

Probab=99.94  E-value=1.6e-24  Score=217.65  Aligned_cols=243  Identities=18%  Similarity=0.173  Sum_probs=141.7

Q ss_pred             cCchHHHHHHHHHHHHHc------CcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhh--cCCCC
Q 048009          233 EGGMGSVSMAIGSAAREA------GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMD--LVPGN  304 (531)
Q Consensus       233 ~gG~~~l~~~l~~~~~~~------G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~--ll~~~  304 (531)
                      +||+++|++.|++.+.+.      +.+|++|++|++|..++ +.|. |++.+|+++.||+||+|+++.. +.+  +...+
T Consensus       220 ~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~-~gV~-V~~~~G~~~~a~~VIvtvPl~v-Lk~~~I~F~P  296 (487)
T PLN02676        220 PRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSK-NGVT-VKTEDGSVYRAKYVIVSVSLGV-LQSDLIKFKP  296 (487)
T ss_pred             CCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcC-CcEE-EEECCCCEEEeCEEEEccChHH-hccCceEEeC
Confidence            689999999999877543      25799999999999887 5554 8899998899999999887666 443  43345


Q ss_pred             CCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEE
Q 048009          305 ILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEM  384 (531)
Q Consensus       305 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (531)
                      .+|+...+.++++.+ ..+.++++.++++  ||      ++ .+..  .+....+..           .+.    ..++.
T Consensus       297 ~LP~~k~~ai~~l~~-g~~~Kv~l~f~~~--FW------~~-~~~~--~~~~~~~~~-----------~~~----~~~~~  349 (487)
T PLN02676        297 PLPDWKIEAIYQFDM-AVYTKIFLKFPYK--FW------PS-GPGT--EFFLYAHER-----------RGY----YPFWQ  349 (487)
T ss_pred             CCCHHHHHHHHhCCc-eeeEEEEEEeCCC--CC------CC-CCCc--eeeeeeccc-----------ccc----chhhh
Confidence            699888889998888 7889999999875  33      11 0111  111100000           000    00011


Q ss_pred             EeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCC-CCCCceeEEEecCcchHHHHhCC
Q 048009          385 TIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAP-GFSSSIIGYDMLTPPDLEREIGL  463 (531)
Q Consensus       385 ~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P-~~~~~i~~~~~~tp~~~~~~~~~  463 (531)
                      .    .+.  .++|..++.++.. .+..   ..|+. ...++..+.+++.|+++++ .+...+....    .+|... ..
T Consensus       350 ~----~~~--~~~~~~~l~~~~~-g~~a---~~~~~-~s~e~~~~~vl~~L~~~~g~~~~~p~~~~~----~~W~~d-p~  413 (487)
T PLN02676        350 H----LEN--EYPGSNVLFVTVT-DEES---RRIEQ-QPDSETKAEIMEVLRKMFGPNIPEATDILV----PRWWSN-RF  413 (487)
T ss_pred             h----ccc--CCCCCCEEEEEec-hHHH---HHHHh-CCHHHHHHHHHHHHHHHhCCCCCCcceEEe----cccCCC-CC
Confidence            1    011  1224445554432 1110   01111 1236788899999999985 2222111111    122221 11


Q ss_pred             CCCcccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCC--CCCcCCc--hHHHHHHHHHHHhhh
Q 048009          464 TGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHP--GGGVMGA--PGRNAAGIVLQDLKK  528 (531)
Q Consensus       464 ~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~--g~g~~~~--sg~~aa~~i~~~~~~  528 (531)
                      ..|++....  +.+.....+     ..+.|+.+|||||+.+..  .+.++||  ||++||++|++.++.
T Consensus       414 s~Gsys~~~--pG~~~~~~~-----~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~~  475 (487)
T PLN02676        414 FKGSYSNWP--IGVSRYEFD-----QIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKK  475 (487)
T ss_pred             CCcccCCCC--CCCChhHHH-----HHhCCCCceEEeccccccccccchHHHHHHHHHHHHHHHHHhcc
Confidence            123221111  111100111     335678899999999965  3456788  999999999987643

>PLN02568 polyamine oxidase

Probab=99.94  E-value=2.5e-24  Score=217.62  Aligned_cols=101  Identities=19%  Similarity=0.146  Sum_probs=81.7

Q ss_pred             cccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhh-----cCCC
Q 048009          229 WSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMD-----LVPG  303 (531)
Q Consensus       229 ~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~-----ll~~  303 (531)
                      +..+.||++.|+++|++.+.  +.+|++|++|++|..++ +.+. |++.+|+++.||+||+|+++..+...     +.-.
T Consensus       234 ~~~i~gG~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~-~~v~-V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~  309 (539)
T PLN02568        234 EITIAKGYLSVIEALASVLP--PGTIQLGRKVTRIEWQD-EPVK-LHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFS  309 (539)
T ss_pred             eEEECCcHHHHHHHHHhhCC--CCEEEeCCeEEEEEEeC-CeEE-EEEcCCCEEEcCEEEEcCCHHHHhhccccccceec
Confidence            44789999999999988774  35799999999999876 5544 88889988999999998887774321     2234


Q ss_pred             CCCChHHHHHhhccCCCCCeEEEeeecCCCC
Q 048009          304 NILPDDFILSIKHSDYSSGTTKINLAVDKLP  334 (531)
Q Consensus       304 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  334 (531)
                      +.+|+.+.++|+.+.+ ..+.++++.+++++
T Consensus       310 P~LP~~k~~Ai~~l~~-g~~~Ki~l~f~~~f  339 (539)
T PLN02568        310 PPLPDFKTDAISRLGF-GVVNKLFVELSPRP  339 (539)
T ss_pred             CCCCHHHHHHHHhcCC-ceeeEEEEEecCCC
Confidence            5699988999999988 78899999999863

>PLN02529 lysine-specific histone demethylase 1

Probab=99.93  E-value=1.6e-23  Score=215.39  Aligned_cols=239  Identities=13%  Similarity=0.114  Sum_probs=137.8

Q ss_pred             ccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHh--hcCCCCC
Q 048009          228 IWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFM--DLVPGNI  305 (531)
Q Consensus       228 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~--~ll~~~~  305 (531)
                      ....+.||+++|+++|++     +..|++|++|++|..++ +.|. |++ +++++.||+||+|+++..+ .  .+.-.+.
T Consensus       348 ~~~~i~GG~~~Li~aLA~-----~L~IrLnt~V~~I~~~~-dGVt-V~t-~~~~~~AD~VIVTVPlgVL-k~~~I~F~Pp  418 (738)
T PLN02529        348 DHCFLAGGNWRLINALCE-----GVPIFYGKTVDTIKYGN-DGVE-VIA-GSQVFQADMVLCTVPLGVL-KKRTIRFEPE  418 (738)
T ss_pred             ceEEECCcHHHHHHHHHh-----cCCEEcCCceeEEEEcC-CeEE-EEE-CCEEEEcCEEEECCCHHHH-HhccccCCCC
Confidence            344789999999999976     34699999999999987 5443 654 4457999999998877774 4  2322445


Q ss_pred             CChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEE
Q 048009          306 LPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMT  385 (531)
Q Consensus       306 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      +|+.+.++|+++.| .+..++++.++++  ||      ++. ....|  +...+.                .....++..
T Consensus       419 LP~~K~~AI~rL~y-G~v~KV~L~F~~~--FW------~~~-~~~fG--~l~~~~----------------~~~g~~~~~  470 (738)
T PLN02529        419 LPRRKLAAIDRLGF-GLLNKVAMVFPSV--FW------GEE-LDTFG--CLNESS----------------NKRGEFFLF  470 (738)
T ss_pred             CCHHHHHHHHcCCC-ceeEEEEEEeCCc--cc------cCC-CCceE--EEeccC----------------CCCceEEEE
Confidence            89888999999999 6789999999874  22      010 11111  111000                001111121


Q ss_pred             eCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCC-------CCCceeEEEecCcchHH
Q 048009          386 IPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPG-------FSSSIIGYDMLTPPDLE  458 (531)
Q Consensus       386 ~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~-------~~~~i~~~~~~tp~~~~  458 (531)
                       .+.   .. +.|..++.+++.. +...   .+.. ...+++.+.+++.|.++++.       ....+...|...|.+..
T Consensus       471 -~~~---~~-~~ggpvLvafv~G-~~A~---~le~-lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~G  540 (738)
T PLN02529        471 -YGY---HT-VSGGPALVALVAG-EAAQ---RFEN-TDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYG  540 (738)
T ss_pred             -ecC---CC-CCCCCEEEEEECc-hhhH---HHhc-CCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCC
Confidence             111   11 2233456665432 1110   1111 12378889999999998741       12233333333333332


Q ss_pred             HHhCCCCCcccccCCCccccccCCCCCCCCCCCCC-CCCeeecCCCCCCC--CCcCCc--hHHHHHHHHHHHhhh
Q 048009          459 REIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTP-LQGLYMCGSGTHPG--GGVMGA--PGRNAAGIVLQDLKK  528 (531)
Q Consensus       459 ~~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~-~~~ly~aG~~~~~g--~g~~~~--sg~~aa~~i~~~~~~  528 (531)
                      .|.....|..      ...   +.      ....| ..+|||||++|.++  +.++||  ||..||++|++.++.
T Consensus       541 sYS~~~~g~~------~~d---~~------~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~~  600 (738)
T PLN02529        541 SYSHVRVQSS------GSD---YD------ILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVARS  600 (738)
T ss_pred             CcccCCCCCc------hhH---HH------HHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHhh
Confidence            2221111100      000   00      11223 36899999999653  356688  999999999987643

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.93  E-value=1.4e-23  Score=197.09  Aligned_cols=240  Identities=18%  Similarity=0.144  Sum_probs=150.9

Q ss_pred             cccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHH
Q 048009          231 YVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDF  310 (531)
Q Consensus       231 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~  310 (531)
                      .+.||+++|++++++.+   |-.|+++.+|.+|..++ .+|+ |++.+..++.+|+||+|.++.. +.++--.+.+++++
T Consensus       203 ~~~GGmd~la~Afa~ql---~~~I~~~~~V~rI~q~~-~gV~-Vt~~~~~~~~ad~~i~tiPl~~-l~qI~f~P~l~~~~  276 (450)
T COG1231         203 QRLGGMDQLAEAFAKQL---GTRILLNEPVRRIDQDG-DGVT-VTADDVGQYVADYVLVTIPLAI-LGQIDFAPLLPAEY  276 (450)
T ss_pred             ccCccHHHHHHHHHHHh---hceEEecCceeeEEEcC-CeEE-EEeCCcceEEecEEEEecCHHH-HhhcccCCCCCHHH
Confidence            45599999999998766   56799999999999987 5554 8888845699999999765554 56664445688889


Q ss_pred             HHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCC
Q 048009          311 ILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVL  390 (531)
Q Consensus       311 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  390 (531)
                      ++++....| .+.+++.+.++++  ||      ++.. .+.|..+.                     +....+++.+|. 
T Consensus       277 ~~a~~~~~y-~~~~K~~v~f~rp--FW------ee~~-~l~G~~~t---------------------D~~~~~i~~~s~-  324 (450)
T COG1231         277 KQAAKGVPY-GSATKIGVAFSRP--FW------EEAG-ILGGESLT---------------------DLGLGFISYPSA-  324 (450)
T ss_pred             HHHhcCcCc-chheeeeeecCch--hh------hhcc-cCCceEee---------------------cCCcceEecCcc-
Confidence            999988888 7889999999885  33      1221 12233332                     223446777764 


Q ss_pred             CCCCCCCCceEEEEE-eccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCC-CceeEEEecCcchHHHHhCCCCCcc
Q 048009          391 DKTISPPGNHVINLF-IQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFS-SSIIGYDMLTPPDLEREIGLTGGNI  468 (531)
Q Consensus       391 d~~~ap~G~~~l~~~-~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-~~i~~~~~~tp~~~~~~~~~~~G~~  468 (531)
                      +..   +|..+|.-+ .-.....    .|+.- ..++..+.++.++.+++|+-. +......   -.+|.+.....+|. 
T Consensus       325 ~~~---~G~gVl~g~~~~g~~A~----~~~~~-~~~~r~~~vl~~l~~~~g~~a~~~f~~~~---~~~W~~dpwt~G~~-  392 (450)
T COG1231         325 PFA---DGPGVLLGSYAFGDDAL----VIDAL-PEAERRQKVLARLAKLFGDEAADPFDYGA---SVDWSKDPWTLGGT-  392 (450)
T ss_pred             ccC---CCceEEEeeeeccccce----eEecC-CHHHHHHHHHHhHhhhCChhhccccccce---eeecccCCcCCccc-
Confidence            222   455555442 1111111    33321 126788999999999999433 2222201   11232221122111 


Q ss_pred             cccCCCccccccCCCCCCCCCCCCCCCCeeecC-CCC-CCCCCcCCc--hHHHHHHHHHHHhh
Q 048009          469 FHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCG-SGT-HPGGGVMGA--PGRNAAGIVLQDLK  527 (531)
Q Consensus       469 ~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG-~~~-~~g~g~~~~--sg~~aa~~i~~~~~  527 (531)
                        ......+...+-|     ....|...++||| +++ .-+|.+.||  ||+.||.+|...+.
T Consensus       393 --aa~~~g~~~~~~~-----~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~  448 (450)
T COG1231         393 --AAYPPGQRTKLYP-----TLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALLS  448 (450)
T ss_pred             --cccCCcccccccc-----cccCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHHhhc
Confidence              1223333322222     4456788999999 666 236678888  99999999987654

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.93  E-value=1.3e-23  Score=217.02  Aligned_cols=239  Identities=13%  Similarity=0.091  Sum_probs=142.2

Q ss_pred             cccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhh--cCCCCCC
Q 048009          229 WSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMD--LVPGNIL  306 (531)
Q Consensus       229 ~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~--ll~~~~~  306 (531)
                      +..+.||++.|+++|++.+     .|++|++|++|..++ +.+. | +.+|+++.||+||+|+++.. +.+  +.-.+.+
T Consensus       429 ~~~v~GG~~~Li~aLa~~L-----~I~ln~~V~~I~~~~-dgV~-V-~~~G~~~~AD~VIvTvPl~v-Lk~~~I~F~P~L  499 (808)
T PLN02328        429 HCFIPGGNDTFVRELAKDL-----PIFYERTVESIRYGV-DGVI-V-YAGGQEFHGDMVLCTVPLGV-LKKGSIEFYPEL  499 (808)
T ss_pred             EEEECCcHHHHHHHHHhhC-----CcccCCeeEEEEEcC-CeEE-E-EeCCeEEEcCEEEECCCHHH-HhhcccccCCCC
Confidence            4478899999999998755     399999999999977 4443 4 45777899999999877776 342  2223458


Q ss_pred             ChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEe
Q 048009          307 PDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTI  386 (531)
Q Consensus       307 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                      |+.+.+.|+++.| ..+.++++.++++  ||       +......|.+.-+..            .+|     .+  ..+
T Consensus       500 P~~K~~AI~~l~y-G~~~KV~L~F~~~--FW-------~~~~d~fG~l~~d~s------------~rG-----~~--~lf  550 (808)
T PLN02328        500 PQRKKDAIQRLGY-GLLNKVALLFPYN--FW-------GGEIDTFGHLTEDPS------------MRG-----EF--FLF  550 (808)
T ss_pred             CHHHHHHHHcCCC-cceEEEEEEeCCc--cc-------cCCCCceEEEeecCC------------CCc-----eE--EEE
Confidence            9999999999999 6889999999874  22       110111122211000            011     11  112


Q ss_pred             CCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCC-------CCCCceeEEEecCcchHHH
Q 048009          387 PSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAP-------GFSSSIIGYDMLTPPDLER  459 (531)
Q Consensus       387 ~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P-------~~~~~i~~~~~~tp~~~~~  459 (531)
                      ++..    .+.|..++..++.. ++..   .+.. ...+++.+.+++.|.++++       .....+...|...|.++..
T Consensus       551 ~s~s----~~~G~~vLvafv~G-~~A~---~~e~-lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GS  621 (808)
T PLN02328        551 YSYS----SVSGGPLLIALVAG-DAAV---KFET-LSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGS  621 (808)
T ss_pred             ecCC----CCCCCcEEEEEecC-hhhH---HHhc-CCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCC
Confidence            2211    12355666666532 1110   1111 1236788889999988874       2233444444444444433


Q ss_pred             HhCCCCCcccccCCCccccccCCCCCCCCCCCCCC--CCeeecCCCCCC--CCCcCCc--hHHHHHHHHHHHhhhh
Q 048009          460 EIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPL--QGLYMCGSGTHP--GGGVMGA--PGRNAAGIVLQDLKKS  529 (531)
Q Consensus       460 ~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~--~~ly~aG~~~~~--g~g~~~~--sg~~aa~~i~~~~~~~  529 (531)
                      |.....|..          ....+     ....|+  .+|||||++|..  .+.++||  ||..||+.|++.+++.
T Consensus       622 YS~~~pG~~----------~~~~~-----~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~  682 (808)
T PLN02328        622 YSYVAVGSS----------GDDYD-----ILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVARRR  682 (808)
T ss_pred             CCCCCCCCc----------hhHHH-----HHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhc
Confidence            322111110          00000     112233  479999999964  2466788  9999999999977654

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=99.93  E-value=2.1e-23  Score=195.54  Aligned_cols=257  Identities=17%  Similarity=0.162  Sum_probs=150.0

Q ss_pred             ccCchHHHHHHHHHHHHHc----C--cEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhh----cC
Q 048009          232 VEGGMGSVSMAIGSAAREA----G--AHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMD----LV  301 (531)
Q Consensus       232 ~~gG~~~l~~~l~~~~~~~----G--~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~----ll  301 (531)
                      ..-|...+.+.|.+.+.+.    |  .+++++++|.+|..++.+.+. |++.||+.+.||+||++.....+ .+    |+
T Consensus       218 ~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~-l~c~dg~v~~adhVIvTvsLGvL-k~~h~~lF  295 (498)
T KOG0685|consen  218 NKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVK-LRCSDGEVFHADHVIVTVSLGVL-KEQHHKLF  295 (498)
T ss_pred             chhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcEE-EEEeCCcEEeccEEEEEeechhh-hhhhhhhc
Confidence            3445666777666644322    2  356677999999998656665 99999999999999998776653 33    44


Q ss_pred             CCCCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCe
Q 048009          302 PGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPI  381 (531)
Q Consensus       302 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (531)
                       .+++|..+.++|+++.+ .++.++||.+++++ |+       .. ....-.++. +.+..++...- +.    +.++..
T Consensus       296 -~P~LP~~K~~AIe~lgf-Gtv~KiFLE~E~pf-wp-------~~-~~~i~~lw~-~e~l~e~r~~~-~~----w~~~~~  358 (498)
T KOG0685|consen  296 -VPPLPAEKQRAIERLGF-GTVNKIFLEFEEPF-WP-------SD-WNGIQLLWL-DEDLEELRSTL-DA----WEEDIM  358 (498)
T ss_pred             -CCCCCHHHHHHHHhccC-CccceEEEEccCCC-CC-------CC-CceeEEEEe-cCcHHHHhhhh-HH----HHhhce
Confidence             45699999999999999 78999999999864 31       10 111112333 33333332211 11    111121


Q ss_pred             EEEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHh-----CCCCCCceeEEEecCcch
Q 048009          382 IEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEY-----APGFSSSIIGYDMLTPPD  456 (531)
Q Consensus       382 ~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~-----~P~~~~~i~~~~~~tp~~  456 (531)
                        ...+..    .+|   ++|..++.. +-....++.++    |++.+.+...+.++     +|..+..+...+...|.+
T Consensus       359 --~f~~v~----~~~---~vL~gWiaG-~~~~~me~lsd----Eev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~f  424 (498)
T KOG0685|consen  359 --GFQPVS----WAP---NVLLGWIAG-REARHMETLSD----EEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFF  424 (498)
T ss_pred             --EEEEcC----cch---hhhheeccC-CcceehhhCCH----HHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCcc
Confidence              222211    222   445444321 11111123454    44555555555544     455666666777777777


Q ss_pred             HHHHhCCCCCcccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCC--CCCcCCc--hHHHHHHHHHHHhhh
Q 048009          457 LEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHP--GGGVMGA--PGRNAAGIVLQDLKK  528 (531)
Q Consensus       457 ~~~~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~--g~g~~~~--sg~~aa~~i~~~~~~  528 (531)
                      -.+|.-...|+.-.   ....+..-.|.    ...++=|.+-|||+.||-  -.-++||  ||++.|+++++.+..
T Consensus       425 rGSYSY~svgs~~~---d~~~~a~p~p~----~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y~~  493 (498)
T KOG0685|consen  425 RGSYSYRSVGSDGS---DTGALALPLPL----TLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEHYES  493 (498)
T ss_pred             CceeeEeecccccc---ccchhhccCCc----cccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHHHHh
Confidence            76665444443321   11211122331    223445789999999964  2345687  999999999986654

>PLN03000 amine oxidase

Probab=99.93  E-value=3.6e-23  Score=213.27  Aligned_cols=237  Identities=14%  Similarity=0.131  Sum_probs=142.3

Q ss_pred             cccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHh--hcCCCCCC
Q 048009          229 WSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFM--DLVPGNIL  306 (531)
Q Consensus       229 ~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~--~ll~~~~~  306 (531)
                      +..++||++.|+++|++.+     .|++++.|++|..++ +.+. |++.+ +++.||+||+|+++.. +.  .+.-.+.+
T Consensus       373 ~~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~~~~-dgV~-V~~~~-~~~~AD~VIvTVPlgV-Lk~~~I~F~PpL  443 (881)
T PLN03000        373 HCFLPGGNGRLVQALAENV-----PILYEKTVQTIRYGS-NGVK-VIAGN-QVYEGDMVLCTVPLGV-LKNGSIKFVPEL  443 (881)
T ss_pred             eEEeCCCHHHHHHHHHhhC-----CcccCCcEEEEEECC-CeEE-EEECC-cEEEeceEEEcCCHHH-HhhCceeeCCCC
Confidence            4468899999999998765     399999999999887 5544 66554 4699999999877766 45  23334559


Q ss_pred             ChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEe
Q 048009          307 PDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTI  386 (531)
Q Consensus       307 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                      |+++.+.|+++.| ..+.++++.++++  ||       +......|.+.-...                  .+.. +..+
T Consensus       444 P~~K~~AI~rL~~-G~l~KViL~Fd~~--FW-------~~d~~~FG~l~~~~~------------------~rg~-~~~f  494 (881)
T PLN03000        444 PQRKLDCIKRLGF-GLLNKVAMLFPYV--FW-------STDLDTFGHLTEDPN------------------YRGE-FFLF  494 (881)
T ss_pred             CHHHHHHHHcCCC-cceEEEEEEeCCc--cc-------cCCCCceeEEecCCC------------------CCce-eEEE
Confidence            9999999999999 6899999999885  33       111111122211000                  0011 1122


Q ss_pred             CCCCCCCCCC-CCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCC--C-----CCceeEEEecCcchHH
Q 048009          387 PSVLDKTISP-PGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPG--F-----SSSIIGYDMLTPPDLE  458 (531)
Q Consensus       387 ~s~~d~~~ap-~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~--~-----~~~i~~~~~~tp~~~~  458 (531)
                      .+     +.| .|..+|..++......    .|+. ...+++.+.+++.|.++++.  .     ...+...|...|.+..
T Consensus       495 ~s-----~sp~~G~pVLvafv~Gd~A~----~le~-lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrG  564 (881)
T PLN03000        495 YS-----YAPVAGGPLLIALVAGEAAH----KFET-MPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLG  564 (881)
T ss_pred             eC-----CCCCCCCcEEEEEecCchhH----Hhhc-CCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCc
Confidence            22     223 3556676665422111    1221 12478899999999998852  1     2233333333333332


Q ss_pred             HHhCCCCCcccccCCCccccccCCCCCCCCCCCCCC--CCeeecCCCCCC--CCCcCCc--hHHHHHHHHHHHhhh
Q 048009          459 REIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPL--QGLYMCGSGTHP--GGGVMGA--PGRNAAGIVLQDLKK  528 (531)
Q Consensus       459 ~~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~--~~ly~aG~~~~~--g~g~~~~--sg~~aa~~i~~~~~~  528 (531)
                      .|....-|          +....+.     ....|+  .+|||||+.|..  .+.++||  ||++||++|+..++.
T Consensus       565 SYS~~~pG----------~~~~~~d-----~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~  625 (881)
T PLN03000        565 SYSNVAVG----------ASGDDYD-----ILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKA  625 (881)
T ss_pred             cccCCCCC----------CchHHHH-----HHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhh
Confidence            22211111          1100000     223454  479999999953  2456788  999999999987654

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.92  E-value=3.3e-25  Score=225.08  Aligned_cols=238  Identities=29%  Similarity=0.416  Sum_probs=139.1

Q ss_pred             ccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHh-hcCCCCCCChHH
Q 048009          232 VEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFM-DLVPGNILPDDF  310 (531)
Q Consensus       232 ~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~-~ll~~~~~~~~~  310 (531)
                      ..|+...+   +...+...|++|++|++|++|..++ +++. |.+.||+++.||+||+|+++..+.. .+.+  .++...
T Consensus       207 ~~g~~~~~---~~~~~~~~g~~i~l~~~V~~I~~~~-~~v~-v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p--~l~~~~  279 (450)
T PF01593_consen  207 GMGGLSLA---LALAAEELGGEIRLNTPVTRIERED-GGVT-VTTEDGETIEADAVISAVPPSVLKNILLLP--PLPEDK  279 (450)
T ss_dssp             ETTTTHHH---HHHHHHHHGGGEESSEEEEEEEEES-SEEE-EEETTSSEEEESEEEE-S-HHHHHTSEEES--TSHHHH
T ss_pred             cccchhHH---HHHHHhhcCceeecCCcceeccccc-cccc-cccccceEEecceeeecCchhhhhhhhhcc--cccccc
Confidence            34444443   3344556678999999999999998 7765 8899999999999999988888532 3333  377767


Q ss_pred             HHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCC
Q 048009          311 ILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVL  390 (531)
Q Consensus       311 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  390 (531)
                      .+.++.+.+ .+..++++.++...-..         .....+.+..+.                   ..+..++..++..
T Consensus       280 ~~a~~~~~~-~~~~~v~l~~~~~~~~~---------~~~~~~~~~~~~-------------------~~~~~~~~~~~~~  330 (450)
T PF01593_consen  280 RRAIENLPY-SSVSKVFLGFDRPFWPP---------DIDFFGILYSDG-------------------FSPIGYVSDPSKF  330 (450)
T ss_dssp             HHHHHTEEE-EEEEEEEEEESSGGGGS---------TTTESEEEEESS-------------------TSSEEEEEEECCT
T ss_pred             ccccccccc-CcceeEEEeeecccccc---------cccccceecccC-------------------ccccccccccccC
Confidence            778888877 67779999998753210         001222333311                   1244456666655


Q ss_pred             CCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCCCCCcccc
Q 048009          391 DKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFH  470 (531)
Q Consensus       391 d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~~~G~~~~  470 (531)
                      ++.   ++..++..++. .+..   ..|.+ ..++++.+.++++|++++|. .......++ +...|.+. ..+.|++..
T Consensus       331 ~~~---~~~~~l~~~~~-~~~~---~~~~~-~~~e~~~~~~~~~L~~~~~~-~~~~~~~~~-~~~~w~~~-~~~~~~~~~  399 (450)
T PF01593_consen  331 PGR---PGGGVLTSYVG-GPDA---PEWDD-LSDEEILERVLDDLRKILPG-ASIPDPIDI-TVTRWSRD-PYPRGSYSY  399 (450)
T ss_dssp             TSC---TTSEEEEEEEE-HHHH---HHHTT-SCHHHHHHHHHHHHHHHHTT-GGGGEESEE-EEEECTTS-TTTSSSCEC
T ss_pred             ccc---ccCCcceeeee-cccc---chhcc-cchhhhHHHHHHHhhhcccc-ccccccccc-cccccccc-ccccccccc
Confidence            444   34455554432 2211   01221 13488999999999999985 111111111 11122221 111222111


Q ss_pred             cCCCccccccCCCCCCCCCCCCCC-CCeeecCCCCCCC--CCcCCc--hHHHHHHHHH
Q 048009          471 GAMGLDSLFLMRPVKGWSNYRTPL-QGLYMCGSGTHPG--GGVMGA--PGRNAAGIVL  523 (531)
Q Consensus       471 ~~~~~~~~~~~rp~~~~~~~~t~~-~~ly~aG~~~~~g--~g~~~~--sg~~aa~~i~  523 (531)
                      ......  ...++     ..++|+ +||||||+|++++  +++++|  ||+.||++|+
T Consensus       400 ~~~~~~--~~~~~-----~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il  450 (450)
T PF01593_consen  400 FPPGQS--SQFRP-----ALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL  450 (450)
T ss_dssp             HCTTHH--HHHHH-----HHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred             cccccc--ccccc-----cccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence            111111  01232     445677 6999999999987  788988  9999999986

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PLN02976 amine oxidase

Probab=99.91  E-value=3.1e-22  Score=211.58  Aligned_cols=240  Identities=17%  Similarity=0.117  Sum_probs=143.3

Q ss_pred             cccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecC---------CCceeEEEeCCCcEEEcCeEEecCChHhHHh-
Q 048009          229 WSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMIND---------SGRVNGVQLADGAQVHSSIVLSNATPYKTFM-  298 (531)
Q Consensus       229 ~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~---------~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~-  298 (531)
                      ...+.||++.|+++|++.+     .|++|++|++|....         ++.| .|++.+|+++.||+||+|+++..+.. 
T Consensus       928 ~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGV-tVtTsDGetftADaVIVTVPLGVLKag 1001 (1713)
T PLN02976        928 HCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKV-KVSTSNGSEFLGDAVLITVPLGCLKAE 1001 (1713)
T ss_pred             eEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcE-EEEECCCCEEEeceEEEeCCHHHhhhc
Confidence            3368999999999998754     499999999999841         1334 48888998899999999887776321 


Q ss_pred             hcCCCCCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCC
Q 048009          299 DLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSR  378 (531)
Q Consensus       299 ~ll~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (531)
                      .+.-.+.||.....+|..+.+ ..+.++++.|+++  ||       +......|...   .              . ...
T Consensus      1002 ~I~FsPPLPe~KqaAIqrLgf-G~lnKV~LeFdrp--FW-------~~d~d~FG~s~---e--------------d-tdl 1053 (1713)
T PLN02976       1002 TIKFSPPLPDWKYSSIQRLGF-GVLNKVVLEFPEV--FW-------DDSVDYFGATA---E--------------E-TDL 1053 (1713)
T ss_pred             ccccCCcccHHHHHHHHhhcc-ccceEEEEEeCCc--cc-------cCCCCcccccc---c--------------c-CCC
Confidence            243445699988889999988 7889999999874  33       10001111000   0              0 001


Q ss_pred             CCeEEEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCC-----CCCceeEEEecC
Q 048009          379 RPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPG-----FSSSIIGYDMLT  453 (531)
Q Consensus       379 ~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~-----~~~~i~~~~~~t  453 (531)
                      ...++..++     ...|.|..+|..++...... ....+.    .+++.+.+++.|.+++++     ....+...|...
T Consensus      1054 rG~~~~~wn-----lr~psG~pVLVafv~G~aAr-eiEsLS----DEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssD 1123 (1713)
T PLN02976       1054 RGQCFMFWN-----VKKTVGAPVLIALVVGKAAI-DGQSMS----SSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRD 1123 (1713)
T ss_pred             CceEEEecc-----CCCCCCCCEEEEEeccHhHH-HHhhCC----HHHHHHHHHHHHHHHcCcccccCcceeEEecCCCC
Confidence            112223222     12334556666654321110 000222    367889999999999873     223333444444


Q ss_pred             cchHHHHhCCCCCcccccCCCccccccCCCCCCCCCCCCCCCC-eeecCCCCCC--CCCcCCc--hHHHHHHHHHHHhh
Q 048009          454 PPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQG-LYMCGSGTHP--GGGVMGA--PGRNAAGIVLQDLK  527 (531)
Q Consensus       454 p~~~~~~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~-ly~aG~~~~~--g~g~~~~--sg~~aa~~i~~~~~  527 (531)
                      |.+...|...+-|.          ....+.     ....|+.| |||||+.|.+  .+.++||  ||++||++|+..+.
T Consensus      1124 PySrGSYSy~~PGs----------~~~d~d-----~LAePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~ 1187 (1713)
T PLN02976       1124 PFSYGAYSYVAIGA----------SGEDYD-----ILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILN 1187 (1713)
T ss_pred             CCcCccccCCCCCC----------CchHHH-----HHhCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            44433321111111          000000     22346666 9999998854  2456788  99999999998774

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.91  E-value=5.1e-23  Score=197.41  Aligned_cols=435  Identities=16%  Similarity=0.128  Sum_probs=233.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccchh
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGETWN   93 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~~~   93 (531)
                      ++|+|+|||+|||+||++|+++|++|+|+|+++++||.+.++..-.|...+.|-|+|...+++++..    +........
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~~~~~   80 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDRLQLR   80 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchheeehH
Confidence            4899999999999999999999999999999999999999998888999999999999999988776    211111111


Q ss_pred             hhc----cchh-hhHHHHHHHHHH-HHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChh---h
Q 048009           94 EVV----EAKS-IIVYAIFEDQLD-KFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQK---D  164 (531)
Q Consensus        94 ~~~----~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  164 (531)
                      +..    ...+ ...+.++..... .-......++...                     ............+....   .
T Consensus        81 ~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~---------------------~~~~~~~~~~~~~l~~~~~g~  139 (485)
T COG3349          81 EHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLP---------------------QLPRREKIRFVLRLGDAPIGA  139 (485)
T ss_pred             hhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhcc---------------------ccCHHHHhHHhhccccccchh
Confidence            000    0000 000000000000 0000000000000                     00011111111111111   3


Q ss_pred             HHHHHHHHhccHHHHhhcccC-ChhHHHHHhhhhhhccCCCCCCCChHH--HHHHHHhhccCCCCCccccccCchH-HHH
Q 048009          165 LVEFVDLLLSPASKVLNKWFE-TDVLKATLATDAVIGTMSSVHTPGSGY--VLLHHVMGETDGNPGIWSYVEGGMG-SVS  240 (531)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~gG~~-~l~  240 (531)
                      ...+.++...++.+|+.+.-. ....++.+....+.+.+..+....+..  ..+..++-.. .........+|++. .+.
T Consensus       140 ~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~-~~~~i~~~~~g~~~E~~~  218 (485)
T COG3349         140 DRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVT-LEASILRNLRGSPDEVLL  218 (485)
T ss_pred             HHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhc-cCcchhhhhcCCCcceee
Confidence            556677788999999987443 333445554333333332333222211  1111111111 01111124455554 478


Q ss_pred             HHHHHHHHHcCcEEEcCcceeEEEecC---CCceeEEEeCCCcEE---EcCeEEecCChHhHHhhcCCCCCCChHHHHHh
Q 048009          241 MAIGSAAREAGAHIVTRAEVSQLMIND---SGRVNGVQLADGAQV---HSSIVLSNATPYKTFMDLVPGNILPDDFILSI  314 (531)
Q Consensus       241 ~~l~~~~~~~G~~i~~~~~V~~I~~~~---~g~~~~V~~~~g~~~---~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i  314 (531)
                      ..+.+.+.+.|.+++++..|.+|..+.   ..+++++.+. +...   .++.++.+.+... +...++....+......+
T Consensus       219 ~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~-~~~~~ps~W~~~~~f~~l  296 (485)
T COG3349         219 QPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQR-FKRDLPSEWPKWSNFDGL  296 (485)
T ss_pred             ehhhhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccch-HhhcCccccccccccccc
Confidence            888999999999999999999998754   2457777777 4433   4455666555555 355555543334455555


Q ss_pred             hccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCC
Q 048009          315 KHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTI  394 (531)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~  394 (531)
                      ...+. ..+.++++.++..+....+        ..+  ..++++..       +.      .......+.-.+.. .+.+
T Consensus       297 y~l~~-~p~~~~~l~~~~~~~~~~~--------~~~--~~~~dn~~-------~s------~~~l~~~~ad~~~~-~~~y  351 (485)
T COG3349         297 YGLRL-VPVITLHLRFDGWVTELTD--------RNQ--QFGIDNLL-------WS------DDTLGGVVADLALT-SPDY  351 (485)
T ss_pred             ccccc-cceeEEEEeecCccccccc--------cch--hhhhhccc-------cc------cccCCceeeecccc-chhh
Confidence            55444 6788888888864322100        001  11111000       00      00111112222221 1234


Q ss_pred             CCCCceE-EEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCC-CceeEEEecCcchHHHHhCCCCCcccccC
Q 048009          395 SPPGNHV-INLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFS-SSIIGYDMLTPPDLEREIGLTGGNIFHGA  472 (531)
Q Consensus       395 ap~G~~~-l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-~~i~~~~~~tp~~~~~~~~~~~G~~~~~~  472 (531)
                      +.+|..+ +...+  .|..    .|.. +..+++.....++++..+|... ..+....+.++.-.-.           ..
T Consensus       352 ~e~g~~~~le~~~--~~~~----~~~~-~~~~~~~a~~e~~~~~~vP~~~~a~~~~~~i~~~q~~~~-----------~~  413 (485)
T COG3349         352 VEPGAGCYLEKVL--APGW----PFLF-ESDEAIVATFEKELYELVPSLAEAKLKSSVLVNQQSLYG-----------LA  413 (485)
T ss_pred             ccccchhhhhhhh--cccc----cccc-cchhhHHHHHHHHhhhcCCchhcccccccceeccccccc-----------cC
Confidence            4444421 11111  1111    2322 2457888899999998888664 3333333333333221           11


Q ss_pred             CCccccccCCCCCCCCCCCCCCCCeeecCCCC-CCCCCc-CCc--hHHHHHHHHHHHhh
Q 048009          473 MGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGT-HPGGGV-MGA--PGRNAAGIVLQDLK  527 (531)
Q Consensus       473 ~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~-~~g~g~-~~~--sg~~aa~~i~~~~~  527 (531)
                      +.   ....||     +..||++|++++||++ .+..+. +++  ||+.||+.|+..++
T Consensus       414 pg---s~~~rP-----~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~~  464 (485)
T COG3349         414 PG---SYHYRP-----EQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNLG  464 (485)
T ss_pred             CC---ccccCC-----CCCCCccchhhccceeecCCcCccchhhhhHHHHHHHHHHhhh
Confidence            11   124788     8899999999999999 444333 455  99999999997654

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.91  E-value=6.3e-23  Score=206.41  Aligned_cols=399  Identities=18%  Similarity=0.195  Sum_probs=203.8

Q ss_pred             HHHHHHHHcCCcEEEEccCCCCCceeecccccCCe--eecccchhhhcchhhhhhc----Ccccccchh--hhc--cchh
Q 048009           31 TAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGF--KFSRCSYLQSLLRPSLIKC----GTRIGETWN--EVV--EAKS  100 (531)
Q Consensus        31 ~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~--~~d~g~~~~~~~~~~~~~~----gl~~~~~~~--~~~--~~~~  100 (531)
                      +||++|+++|++|+|+|+++++||++.+.. .+|+  .+|.|++++....+.+.+.    |+.......  .+.  ....
T Consensus         1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~-~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~   79 (419)
T TIGR03467         1 SAAVELARAGARVTLFEARPRLGGRARSFE-DGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQGPRLPLPFYDPGG   79 (419)
T ss_pred             ChHHHHHhCCCceEEEecCCCCCCceeEee-cCCCCcceecCCEEEEcccHHHHHHHHHhCCchhhhcccCCcceecCCC
Confidence            589999999999999999999999999986 5554  4999998876655654443    332111000  000  0000


Q ss_pred             hh-HHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhhHHHHHHHHhccHHHH
Q 048009          101 II-VYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKV  179 (531)
Q Consensus       101 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (531)
                      .. .+. ......++ .....+.....         +....+     ..+ ...+.......      .......++.++
T Consensus        80 ~~~~~~-~~~~~~p~-~~~~~~~~~~~---------l~~~~~-----~~~-~~~~~~~~~~~------~~~~~~~s~~~~  136 (419)
T TIGR03467        80 RLSRLR-LSRLPAPL-HLARGLLRAPG---------LSWADK-----LAL-ARALLALRRTR------FRALDDTTVGDW  136 (419)
T ss_pred             Cceeec-CCCCCCCH-HHHHHHhcCCC---------CCHHHH-----HHH-HHHHHHHHhcC------ccccCCCCHHHH
Confidence            00 000 00000000 00000000000         000000     000 00000000000      012245788899


Q ss_pred             hhcccCChhHHHHHhhhhhhccCC-CCCCCChHHHHHH--HHhhccCCCCCccccccCchHHHH-HHHHHHHHHcCcEEE
Q 048009          180 LNKWFETDVLKATLATDAVIGTMS-SVHTPGSGYVLLH--HVMGETDGNPGIWSYVEGGMGSVS-MAIGSAAREAGAHIV  255 (531)
Q Consensus       180 l~~~~~~~~l~~~~~~~~~~g~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gG~~~l~-~~l~~~~~~~G~~i~  255 (531)
                      +.+++.++.+...+....+.+.+. .+...+..+....  ..+.... ....+.+|+||+.++. +.|++.+++.|++|+
T Consensus       137 l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~  215 (419)
T TIGR03467       137 LQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGR-AASDLLLPRVPLSELFPEPARRWLDSRGGEVR  215 (419)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCC-CcceeeeeCCCHHHHHHHHHHHHHHHcCCEEE
Confidence            988765555554333211111111 1221112111111  1111001 1122448999987765 558999999999999


Q ss_pred             cCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHHHHHhhccCCCCCeEEEeeecCCCCc
Q 048009          256 TRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQ  335 (531)
Q Consensus       256 ~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  335 (531)
                      +|++|++|..++ +++..+...+|+++.||+||+|+++.. +.+|++.+    ...+.+++++| .++.++++.++++..
T Consensus       216 ~~~~V~~i~~~~-~~~~~~~~~~g~~~~~d~vi~a~p~~~-~~~ll~~~----~~~~~l~~~~~-~~~~~v~l~~~~~~~  288 (419)
T TIGR03467       216 LGTRVRSIEANA-GGIRALVLSGGETLPADAVVLAVPPRH-AASLLPGE----DLGALLTALGY-SPITTVHLRLDRAVR  288 (419)
T ss_pred             cCCeeeEEEEcC-CcceEEEecCCccccCCEEEEcCCHHH-HHHhCCCc----hHHHHHhhcCC-cceEEEEEEeCCCcC
Confidence            999999999987 655433334677799999999888887 47787541    35567788888 577899999987531


Q ss_pred             cccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCCCCCceEEEEEeccccCCCCC
Q 048009          336 FQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSD  415 (531)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~  415 (531)
                      ..          ....+  .. .                    .+..++...+    ...+. ...+.+++...  . .-
T Consensus       289 ~~----------~~~~~--~~-~--------------------~~~~~~~~~~----~~~~~-~~~~~~~~~~~--~-~~  327 (419)
T TIGR03467       289 LP----------APMVG--LV-G--------------------GLAQWLFDRG----QLAGE-PGYLAVVISAA--R-DL  327 (419)
T ss_pred             CC----------CCeee--ec-C--------------------CceeEEEECC----cCCCC-CCEEEEEEecc--h-hh
Confidence            10          01111  11 0                    0111222111    11122 12333332211  0 00


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHhCCCCCC-ceeEEEecCcchHHHHhCCCCCcccccCCCccccccCCCCCCCCCCCCCC
Q 048009          416 GSWMDPAYRDSFANRCFSLIDEYAPGFSS-SIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPL  494 (531)
Q Consensus       416 ~~~~~~~~k~~~~~~~~~~l~~~~P~~~~-~i~~~~~~tp~~~~~~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~  494 (531)
                      ..|+    ++++.+.+++.|++++|...+ .+..         .+......+ .|.......   ..+|     ...+|+
T Consensus       328 ~~~~----~e~~~~~~l~~l~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~g~~---~~~~-----~~~~~~  385 (419)
T TIGR03467       328 VDLP----REELADRIVAELRRAFPRVAGAKPLW---------ARVIKEKRA-TFAATPGLN---RLRP-----GARTPW  385 (419)
T ss_pred             ccCC----HHHHHHHHHHHHHHhcCccccCCccc---------eEEEEccCC-ccccCCccc---ccCC-----CCCCCc
Confidence            1233    488999999999999986531 1111         111111111 111111111   2344     345788


Q ss_pred             CCeeecCCCCCCC--CCcCCc--hHHHHHHHHHH
Q 048009          495 QGLYMCGSGTHPG--GGVMGA--PGRNAAGIVLQ  524 (531)
Q Consensus       495 ~~ly~aG~~~~~g--~g~~~~--sg~~aa~~i~~  524 (531)
                      +|||||||+++++  +.+.+|  ||..||+.|++
T Consensus       386 ~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~~  419 (419)
T TIGR03467       386 PNLFLAGDWTATGWPATMEGAVRSGYQAAEAVLK  419 (419)
T ss_pred             CCEEEecccccCCCcchHHHHHHHHHHHHHHHhC
Confidence            9999999999864  133456  99999999863

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.91  E-value=5e-22  Score=196.98  Aligned_cols=236  Identities=17%  Similarity=0.191  Sum_probs=137.8

Q ss_pred             cccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhh--cCCCCCCCh
Q 048009          231 YVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMD--LVPGNILPD  308 (531)
Q Consensus       231 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~--ll~~~~~~~  308 (531)
                      ...+|+..+...++.     |.+|+++..|..|...+++. ..+++.++..+.+|+||+++....+ ..  +...+++|.
T Consensus       213 ~~~~G~~~v~~~la~-----~l~I~~~~~v~~i~~~~~~~-~~~~~~~~~~~~~d~vvvt~pl~vL-k~~~i~F~P~Lp~  285 (501)
T KOG0029|consen  213 LMKGGYEPVVNSLAE-----GLDIHLNKRVRKIKYGDDGA-VKVTVETGDGYEADAVVVTVPLGVL-KSGLIEFSPPLPR  285 (501)
T ss_pred             HhhCCccHHHhhcCC-----CcceeeceeeEEEEEecCCc-eEEEEECCCeeEeeEEEEEccHHHh-ccCceeeCCCCcH
Confidence            567888888888865     89999999999999987454 3466666666999999998777664 33  434567999


Q ss_pred             HHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCC
Q 048009          309 DFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPS  388 (531)
Q Consensus       309 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  388 (531)
                      ++.++|+++.. ..+.++.+-|+..  ||.       ....   .+...+....         .++.       + .+.+
T Consensus       286 ~k~~aI~~lg~-g~~~Kv~l~F~~~--fW~-------~~~d---~fg~~~~~~~---------~~~~-------~-~f~~  335 (501)
T KOG0029|consen  286 WKQEAIDRLGF-GLVNKVILEFPRV--FWD-------QDID---FFGIVPETSV---------LRGL-------F-TFYD  335 (501)
T ss_pred             HHHHHHHhcCC-CceeEEEEEeccc--cCC-------CCcC---eEEEcccccc---------ccch-------h-hhhh
Confidence            99999999987 7888999888864  331       0011   1111111100         0000       0 1111


Q ss_pred             CCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCC--CCC---CceeEEEecCcchHHHHhCC
Q 048009          389 VLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAP--GFS---SSIIGYDMLTPPDLEREIGL  463 (531)
Q Consensus       389 ~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P--~~~---~~i~~~~~~tp~~~~~~~~~  463 (531)
                      ..+-.    +..+++..+......    .+.. ..++++++.++..|++++|  ...   +..+..|...+...      
T Consensus       336 ~~~~~----~~~~l~~~~~~~~a~----~~~~-~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~------  400 (501)
T KOG0029|consen  336 CKPVA----GHPVLMSVVVGEAAE----RVET-LSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSG------  400 (501)
T ss_pred             cCccC----CCCeEEEEehhhhhH----HHhc-CCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCC------
Confidence            11111    112333332211111    1221 1358889999999999988  222   22222222222222      


Q ss_pred             CCCcccccCCCccccccCCCCCCCCCCCCCCCC-eeecCCCCCC--CCCcCCc--hHHHHHHHHHHHhh
Q 048009          464 TGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQG-LYMCGSGTHP--GGGVMGA--PGRNAAGIVLQDLK  527 (531)
Q Consensus       464 ~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~-ly~aG~~~~~--g~g~~~~--sg~~aa~~i~~~~~  527 (531)
                        |+++.....       -|...+...+.|+.| +||||..|.-  -+.+.||  ||..+|..|+..+.
T Consensus       401 --gsys~~~~~-------~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~  460 (501)
T KOG0029|consen  401 --GSYSYVAVG-------SDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLI  460 (501)
T ss_pred             --ccccccCCC-------CChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHH
Confidence              222211111       111112244678888 9999999932  2466788  99999999998776

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.85  E-value=2.2e-20  Score=161.86  Aligned_cols=92  Identities=16%  Similarity=0.203  Sum_probs=70.2

Q ss_pred             cCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC-cEEEcCeEEecCChHhHHhhcCCC--CCCChH
Q 048009          233 EGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG-AQVHSSIVLSNATPYKTFMDLVPG--NILPDD  309 (531)
Q Consensus       233 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g-~~~~ad~VV~aa~~~~~~~~ll~~--~~~~~~  309 (531)
                      .-||.+|++.|+.     ..+|+++++|++|...+ +. +.+++++| +...+|.||+|....++ ..|+..  ..+|..
T Consensus       104 ~pgmsalak~LAt-----dL~V~~~~rVt~v~~~~-~~-W~l~~~~g~~~~~~d~vvla~PAPQ~-~~LLt~~~~~~p~~  175 (331)
T COG3380         104 EPGMSALAKFLAT-----DLTVVLETRVTEVARTD-ND-WTLHTDDGTRHTQFDDVVLAIPAPQT-ATLLTTDADDLPAA  175 (331)
T ss_pred             CcchHHHHHHHhc-----cchhhhhhhhhhheecC-Ce-eEEEecCCCcccccceEEEecCCCcc-hhhcCcccccchHH
Confidence            5567788887754     45699999999999875 44 55888665 46789999999998885 577754  457888


Q ss_pred             HHHHhhccCCCCCeEEEeeecCCC
Q 048009          310 FILSIKHSDYSSGTTKINLAVDKL  333 (531)
Q Consensus       310 ~~~~i~~~~~~~~~~~~~~~~~~~  333 (531)
                      ++..+....| .+++.+.+++..+
T Consensus       176 l~~~~a~V~y-~Pc~s~~lg~~q~  198 (331)
T COG3380         176 LRAALADVVY-APCWSAVLGYPQP  198 (331)
T ss_pred             HHHhhcccee-hhHHHHHhcCCcc
Confidence            8888888888 5667777777654

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.81  E-value=2.6e-17  Score=161.95  Aligned_cols=121  Identities=13%  Similarity=0.192  Sum_probs=79.0

Q ss_pred             hccHHHHhhcccCChhHHHHHh-hhhhhccCCCCCCCC-hHHHHH-HHHhhccCCCCCccccccCchHHHHHHHHHHHHH
Q 048009          173 LSPASKVLNKWFETDVLKATLA-TDAVIGTMSSVHTPG-SGYVLL-HHVMGETDGNPGIWSYVEGGMGSVSMAIGSAARE  249 (531)
Q Consensus       173 ~~~~~~~l~~~~~~~~l~~~~~-~~~~~g~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~~~~  249 (531)
                      ..++.++++++..++..+..+. ..+..........+. .....+ .+......+....+.||.||+++|+++|.+.++.
T Consensus       165 ~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~gG~g~L~qal~r~~a~  244 (443)
T PTZ00363        165 TMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYPLYGLGGLPQAFSRLCAI  244 (443)
T ss_pred             cCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccCCcceeeCCCHHHHHHHHHHHHHH
Confidence            4678888887777776666543 111110000111111 111111 1111001111233458999999999999999999


Q ss_pred             cCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCCh
Q 048009          250 AGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATP  293 (531)
Q Consensus       250 ~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~  293 (531)
                      .|++++++++|++|..++++++++|++++|+++.|+.||++...
T Consensus       245 ~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~  288 (443)
T PTZ00363        245 YGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSY  288 (443)
T ss_pred             cCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccc
Confidence            99999999999999987646888899999999999999995443

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.80  E-value=9.8e-19  Score=156.90  Aligned_cols=268  Identities=18%  Similarity=0.164  Sum_probs=149.0

Q ss_pred             cCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeeccc---ccCCeeecccchhhhc-chhhhhhc----C
Q 048009           14 KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEE---LIPGFKFSRCSYLQSL-LRPSLIKC----G   85 (531)
Q Consensus        14 ~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~---~~~g~~~d~g~~~~~~-~~~~~~~~----g   85 (531)
                      +.+..+|+|||+|++||+||+.|+++ ++|+|||++.++||++.+..   .-.|+.+|+|.+++.. .+|++.+.    |
T Consensus         5 ~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iG   83 (447)
T COG2907           5 PHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIG   83 (447)
T ss_pred             CCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcC
Confidence            35678999999999999999999997 99999999999999999874   3456788999887654 67776655    4


Q ss_pred             cccccchhhhccchhhh------------HHHHHHHH-HHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHH
Q 048009           86 TRIGETWNEVVEAKSII------------VYAIFEDQ-LDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAH  152 (531)
Q Consensus        86 l~~~~~~~~~~~~~~~~------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (531)
                      .+.....-.+....+..            .+...... ..++...+..++....                          
T Consensus        84 v~t~as~Msf~v~~d~gglEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r--------------------------  137 (447)
T COG2907          84 VDTKASFMSFSVSLDMGGLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYR--------------------------  137 (447)
T ss_pred             CCCcccceeEEEEecCCceeeccCCCccchhhccccccchhHHHHHHHHHHHhh--------------------------
Confidence            32111110000000000            00000000 0011111111100000                          


Q ss_pred             HHHHHHhcChhhHHHHHHHHhccHHHHhhcc---------cCChhHHHHHhhhhhhccCCCCCCCChHHH-HHHHHhhcc
Q 048009          153 CLRRAISLGQKDLVEFVDLLLSPASKVLNKW---------FETDVLKATLATDAVIGTMSSVHTPGSGYV-LLHHVMGET  222 (531)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~  222 (531)
                             . .....+....-..++.++|.+.         +--+.....++.....    ...-|...+. +..+.-...
T Consensus       138 -------~-~~~~~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d----~~~~pa~~~~~f~~nhGll~  205 (447)
T COG2907         138 -------S-DLAPSDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLAD----ASRYPACNFLVFTDNHGLLY  205 (447)
T ss_pred             -------h-hccchhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhh----hhhhhHHHHHHHHhccCcee
Confidence                   0 0000000011123333444331         1112222222211100    0011111111 111111111


Q ss_pred             CCCCCccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          223 DGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       223 ~~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ......|..+.||+...++.|...+   +++|.+++.|.+|..-.+| +. |...||++-.+|.||+|+.|.+.+ .|++
T Consensus       206 l~~rp~wrtV~ggS~~yvq~laa~~---~~~i~t~~~V~~l~rlPdG-v~-l~~~~G~s~rFD~vViAth~dqAl-~mL~  279 (447)
T COG2907         206 LPKRPTWRTVAGGSRAYVQRLAADI---RGRIETRTPVCRLRRLPDG-VV-LVNADGESRRFDAVVIATHPDQAL-ALLD  279 (447)
T ss_pred             cCCCCceeEcccchHHHHHHHhccc---cceeecCCceeeeeeCCCc-eE-EecCCCCccccceeeeecChHHHH-HhcC
Confidence            4556778889999999988887644   4679999999999987734 33 556679888999999999999964 5665


Q ss_pred             CCCCChHHHHHhhccCCCCCeEEEee
Q 048009          303 GNILPDDFILSIKHSDYSSGTTKINL  328 (531)
Q Consensus       303 ~~~~~~~~~~~i~~~~~~~~~~~~~~  328 (531)
                      +  -+++..+.+..+.|+....+++-
T Consensus       280 e--~sp~e~qll~a~~Ys~n~aVlht  303 (447)
T COG2907         280 E--PSPEERQLLGALRYSANTAVLHT  303 (447)
T ss_pred             C--CCHHHHHHHHhhhhhhceeEEee
Confidence            5  34555668889999655444443

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=99.74  E-value=5.5e-17  Score=150.07  Aligned_cols=240  Identities=19%  Similarity=0.188  Sum_probs=138.9

Q ss_pred             cccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CCc-EEEcCeEEecCChHhHHhhcCCCCCCC
Q 048009          231 YVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DGA-QVHSSIVLSNATPYKTFMDLVPGNILP  307 (531)
Q Consensus       231 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~-~~~ad~VV~aa~~~~~~~~ll~~~~~~  307 (531)
                      -.+||.+.+.+++.+.+.+..+.|.+..++..+.....|++ .+.+.  ++. ....++++.+..+.. +.++++.  ..
T Consensus       243 sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~-~~tl~~~~~~~~~~~~~~~~t~~~~k-~a~ll~~--~~  318 (491)
T KOG1276|consen  243 SLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNW-SLTLVDHSGTQRVVVSYDAATLPAVK-LAKLLRG--LQ  318 (491)
T ss_pred             hhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCc-eeEeEcCCCceeeeccccccccchHH-hhhhccc--cc
Confidence            46899999999999999999999999999999887654543 35554  443 344555555555554 6888876  44


Q ss_pred             hHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeC
Q 048009          308 DDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIP  387 (531)
Q Consensus       308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (531)
                      +.....+..+.| .++.++.+-+++...         +...+..|.++.. ..               -.....+-+.+.
T Consensus       319 ~sls~~L~ei~y-~~V~vVn~~yp~~~~---------~~pl~GFG~LvPs-~~---------------~~~~~~LG~ifd  372 (491)
T KOG1276|consen  319 NSLSNALSEIPY-VPVAVVNTYYPKEKI---------DLPLQGFGLLVPS-EP---------------KNGFKTLGTIFD  372 (491)
T ss_pred             hhhhhhhhcCCC-CceEEEEEeccCccc---------ccccccceeeccC-CC---------------CCCCceeEEEee
Confidence            556677778877 788888888876421         1112344444331 11               011234445555


Q ss_pred             CCCCCCCCCCCceEEEEEeccccCCCCCCCCCC-hHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCCCCC
Q 048009          388 SVLDKTISPPGNHVINLFIQYTPYKPSDGSWMD-PAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGG  466 (531)
Q Consensus       388 s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~-~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~~~G  466 (531)
                      |...|.++|.++.+++...  ..+.    .|.- ....|++.+.+.+.|.++. +++.......+    ++.+ .-.|+.
T Consensus       373 S~~Fp~~~~s~~vtvm~gg--~~~~----n~~~~~~S~ee~~~~v~~alq~~L-gi~~~P~~~~v----~l~~-~ciPqy  440 (491)
T KOG1276|consen  373 SMLFPDRSPSPKVTVMMGG--GGST----NTSLAVPSPEELVNAVTSALQKML-GISNKPVSVNV----HLWK-NCIPQY  440 (491)
T ss_pred             cccCCCCCCCceEEEEecc--cccc----cCcCCCCCHHHHHHHHHHHHHHHh-CCCCCcccccc----eehh-hcccce
Confidence            6666777777666555532  2111    1111 1134888999999998875 33322111111    1111 013333


Q ss_pred             cccccCCCccccccCCCCCCCCCCCC--CCCCeeecCCCCCCCCCcCCc--hHHHHHHHHH
Q 048009          467 NIFHGAMGLDSLFLMRPVKGWSNYRT--PLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVL  523 (531)
Q Consensus       467 ~~~~~~~~~~~~~~~rp~~~~~~~~t--~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~  523 (531)
                      .+.|... ...   .+      ..-+  +-.+|+++|.|.. |.++..+  +|+.+|..++
T Consensus       441 ~vGh~~~-le~---a~------~~l~~~~g~~l~l~G~~y~-Gv~vgdcI~sg~~~A~~v~  490 (491)
T KOG1276|consen  441 TVGHDDV-LEA---AK------SMLTDSPGLGLFLGGNHYG-GVSVGDCIESGRKTAVEVI  490 (491)
T ss_pred             ecchHHH-HHH---HH------HHHHhCCCCceEeeccccC-CCChhHHHHhhHHHHHhhc
Confidence            3322111 000   00      1112  2358999999984 6777766  9999988764

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.67  E-value=7.1e-16  Score=152.95  Aligned_cols=58  Identities=28%  Similarity=0.389  Sum_probs=51.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHc----CCcEEEEccCCCCCceeeccc-ccCCeeecccchh
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARA----GLSVAVLERRHVIGGAAVTEE-LIPGFKFSRCSYL   73 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~----G~~V~v~E~~~~~GG~~~s~~-~~~g~~~d~g~~~   73 (531)
                      ...+|+|||||++||+||++|++.    |++|+|+|+++.+||++.+.. ...||.++.|+..
T Consensus        21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~   83 (576)
T PRK13977         21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM   83 (576)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc
Confidence            458999999999999999999995    689999999999999998754 3679999988764

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.62  E-value=8.1e-15  Score=136.14  Aligned_cols=63  Identities=16%  Similarity=0.195  Sum_probs=55.0

Q ss_pred             ccc-CchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          231 YVE-GGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       231 ~~~-gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +|. ...+.|+++|.+.+++.||+|+++++|.+|..++ .. ..|.+.+|+++.||.+|+|+|..+
T Consensus       104 Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~-~~-f~l~t~~g~~i~~d~lilAtGG~S  167 (408)
T COG2081         104 FPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD-SG-FRLDTSSGETVKCDSLILATGGKS  167 (408)
T ss_pred             cCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC-ce-EEEEcCCCCEEEccEEEEecCCcC
Confidence            565 6778999999999999999999999999999886 44 448899998899999999999554

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.61  E-value=1.6e-13  Score=123.43  Aligned_cols=65  Identities=23%  Similarity=0.300  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecC-CCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMIND-SGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPG  303 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~  303 (531)
                      .+-.++++..+++.|+.++.+.+|..+...+ ++..+.|++.+|..+.|+.+|+|+|+|.  .+|++.
T Consensus       153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi--~klL~~  218 (399)
T KOG2820|consen  153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI--NKLLPT  218 (399)
T ss_pred             HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH--HhhcCc
Confidence            4677888999999999999999999998532 2566779999999999999999999998  688874

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.58  E-value=2.3e-14  Score=141.00  Aligned_cols=68  Identities=32%  Similarity=0.566  Sum_probs=57.9

Q ss_pred             cccCc---hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          231 YVEGG---MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       231 ~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ++.+|   ...+.++|.+.+++.|++|+.+++|++|..++ +++.+|++.+|+ +.||.||+|+|++.  ..|++
T Consensus       138 ~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~gv~~~~g~-i~ad~vV~a~G~~s--~~l~~  208 (358)
T PF01266_consen  138 FPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDG-GRVTGVRTSDGE-IRADRVVLAAGAWS--PQLLP  208 (358)
T ss_dssp             ETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEET-TEEEEEEETTEE-EEECEEEE--GGGH--HHHHH
T ss_pred             ccccccccccchhhhhHHHHHHhhhhccccccccchhhcc-cccccccccccc-cccceeEecccccc--eeeee
Confidence            66777   78999999999999999999999999999998 888889999998 99999999999987  44543

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.57  E-value=1.5e-12  Score=128.81  Aligned_cols=61  Identities=28%  Similarity=0.329  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+...+.+.+.+.|++++.+++|++|..++ +.+ .|++++| ++.+|.||+|+|++.  ..+++
T Consensus       149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~g-~~~a~~vV~A~G~~~--~~l~~  209 (376)
T PRK11259        149 ELAIKAHLRLAREAGAELLFNEPVTAIEADG-DGV-TVTTADG-TYEAKKLVVSAGAWV--KDLLP  209 (376)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEeeC-CeE-EEEeCCC-EEEeeEEEEecCcch--hhhcc
Confidence            4677778888888999999999999999876 544 4888888 599999999999987  45554

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.55  E-value=2.6e-12  Score=127.38  Aligned_cols=56  Identities=16%  Similarity=0.208  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++.|++++.+++|++|..++ +.+. |+++++ ++.+|.||+|+|++.
T Consensus       145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~-~~~~-v~~~~~-~i~a~~vV~aaG~~~  200 (380)
T TIGR01377       145 EKALRALQELAEAHGATVRDGTKVVEIEPTE-LLVT-VKTTKG-SYQANKLVVTAGAWT  200 (380)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCeEEEEEecC-CeEE-EEeCCC-EEEeCEEEEecCcch
Confidence            4788888888899999999999999999876 5554 777776 599999999999886

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.54  E-value=7.3e-12  Score=125.15  Aligned_cols=58  Identities=24%  Similarity=0.344  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.++++|++++.+++|++|..++++++.+|++.+|. +.+++||++++++.
T Consensus       183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~-i~a~~vVvaagg~~  240 (407)
T TIGR01373       183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGF-IGAKKVGVAVAGHS  240 (407)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCce-EECCEEEECCChhh
Confidence            36777888899999999999999999986532677778888884 99999999999887

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.50  E-value=5.5e-13  Score=128.51  Aligned_cols=58  Identities=19%  Similarity=0.342  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcE-EEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQ-VHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~-~~ad~VV~aa~~~~  295 (531)
                      ..++.+|++.++++|++|++|++|+.|+.++ +.++.+.+.+|++ ++|+.||.++|..+
T Consensus       153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~-dg~~~~~~~~g~~~~~ak~Vin~AGl~A  211 (429)
T COG0579         153 GELTRALAEEAQANGVELRLNTEVTGIEKQS-DGVFVLNTSNGEETLEAKFVINAAGLYA  211 (429)
T ss_pred             HHHHHHHHHHHHHcCCEEEecCeeeEEEEeC-CceEEEEecCCcEEEEeeEEEECCchhH
Confidence            4789999999999999999999999999987 4356688888876 99999999999776

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.50  E-value=1.3e-11  Score=123.44  Aligned_cols=57  Identities=14%  Similarity=0.145  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC-----cEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG-----AQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g-----~~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++.|++|+.+++|++|..++ +.+. +.+.++     .++.||+||+|+|++.
T Consensus       197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~-~~~~-v~~~~~~~~~~~~i~a~~vV~a~G~~s  258 (410)
T PRK12409        197 HKFTTGLAAACARLGVQFRYGQEVTSIKTDG-GGVV-LTVQPSAEHPSRTLEFDGVVVCAGVGS  258 (410)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEE-EEEEcCCCCccceEecCEEEECCCcCh
Confidence            4678888999999999999999999998766 5544 444332     3689999999999997

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.49  E-value=9.8e-12  Score=124.79  Aligned_cols=58  Identities=19%  Similarity=0.359  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ...++..|.+.++++|++|+++++|++|..++ +++.+|++.++ ++.||+||+|+|++.
T Consensus       200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~t~~~-~~~a~~VV~a~G~~~  257 (416)
T PRK00711        200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG-GRITGVQTGGG-VITADAYVVALGSYS  257 (416)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEEEEEEeCCc-EEeCCEEEECCCcch
Confidence            35788889999999999999999999999877 77767877766 599999999999987

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.49  E-value=2.9e-13  Score=132.11  Aligned_cols=60  Identities=18%  Similarity=0.202  Sum_probs=44.7

Q ss_pred             chHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          235 GMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       235 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      -..++.+.|.+.++++|++|+++++|++|..++ +++..|++++++++.||.||+|+|..+
T Consensus       107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~-~~~f~v~~~~~~~~~a~~vILAtGG~S  166 (409)
T PF03486_consen  107 KASSVVDALLEELKRLGVEIHFNTRVKSIEKKE-DGVFGVKTKNGGEYEADAVILATGGKS  166 (409)
T ss_dssp             -HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET-TEEEEEEETTTEEEEESEEEE----SS
T ss_pred             cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC-CceeEeeccCcccccCCEEEEecCCCC
Confidence            346799999999999999999999999999987 776779997777899999999988543

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.46  E-value=8.6e-14  Score=98.85  Aligned_cols=54  Identities=41%  Similarity=0.665  Sum_probs=47.9

Q ss_pred             EECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhc
Q 048009           22 VIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSL   76 (531)
Q Consensus        22 IIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~   76 (531)
                      |||||++||+||+.|+++|++|+|+|+++++||++.+.. .+|+.+|.|++.+..
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~-~~g~~~d~g~~~~~~   54 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFR-IPGYRFDLGAHYFFP   54 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEE-ETTEEEETSS-SEEE
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEE-ECCEEEeeccEEEeC
Confidence            899999999999999999999999999999999999876 588999999877543

...

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.43  E-value=3.8e-12  Score=128.67  Aligned_cols=60  Identities=20%  Similarity=0.236  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..++..|.+.+++.|++|+.+++|++|+. + +. +.|++.+|+ +.||+||+|++.+.  ..+++
T Consensus       183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~-~~-~~v~t~~g~-v~A~~VV~Atga~s--~~l~~  242 (460)
T TIGR03329       183 GLLVRGLRRVALELGVEIHENTPMTGLEE-G-QP-AVVRTPDGQ-VTADKVVLALNAWM--ASHFP  242 (460)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCeEEEEee-C-Cc-eEEEeCCcE-EECCEEEEcccccc--cccCh
Confidence            57889999999999999999999999975 3 33 457887775 99999999999986  44543

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.42  E-value=5e-12  Score=126.71  Aligned_cols=57  Identities=19%  Similarity=0.284  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHH----cC--cEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAARE----AG--AHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~----~G--~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..++..|.+.+++    +|  ++|+++++|++|..++ +..+.|++.+|+ +.||.||+|||+|.
T Consensus       211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~G~-i~A~~VVvaAG~~S  273 (497)
T PTZ00383        211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNRGE-IRARFVVVSACGYS  273 (497)
T ss_pred             HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECCCE-EEeCEEEECcChhH
Confidence            5789999999988    78  7899999999999886 556668888884 99999999999998

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.41  E-value=5.2e-12  Score=125.35  Aligned_cols=56  Identities=21%  Similarity=0.236  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+.++|.+.++++|++++++++|++|..++ +.+ .|++.+| ++.||.||+|+|.+.
T Consensus       149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~-~~~-~V~~~~g-~i~ad~vV~A~G~~s  204 (393)
T PRK11728        149 RAVAEAMAELIQARGGEIRLGAEVTALDEHA-NGV-VVRTTQG-EYEARTLINCAGLMS  204 (393)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEecC-CeE-EEEECCC-EEEeCEEEECCCcch
Confidence            6899999999999999999999999998776 554 5778777 599999999999886

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.41  E-value=6.5e-12  Score=129.01  Aligned_cols=62  Identities=27%  Similarity=0.394  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC---CC--cEEEcCeEEecCChHhHHhhcC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA---DG--AQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g--~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      ..++.++.+.+.++|++|+++++|++|..++ +++++|++.   +|  .++.|+.||+|+|+|.  .++.
T Consensus       149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa--~~l~  215 (546)
T PRK11101        149 FRLTAANMLDAKEHGAQILTYHEVTGLIREG-DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG--QHIA  215 (546)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEEcC-CeEEEEEEEEcCCCcEEEEECCEEEECCChhH--HHHH
Confidence            4788888888999999999999999999887 888888763   23  3689999999999997  4443

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.39  E-value=1.3e-10  Score=115.64  Aligned_cols=56  Identities=27%  Similarity=0.354  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..++..|.+.++++| ..+..++.|..+..+ . +.+.|.+.+|+ +.||+||+|+|++.
T Consensus       156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~  212 (387)
T COG0665         156 RLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWA  212 (387)
T ss_pred             HHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHH
Confidence            578999999999999 566668999999875 1 45678999898 99999999999997

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.39  E-value=1e-11  Score=131.11  Aligned_cols=61  Identities=16%  Similarity=0.152  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..++.+|.+.+++ |++|+.+++|++|..++ +++. |++.+|..+.||.||+|+|.+.  ..+.+
T Consensus       408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~-~~~~-v~t~~g~~~~ad~VV~A~G~~s--~~l~~  468 (662)
T PRK01747        408 AELCRALLALAGQ-QLTIHFGHEVARLERED-DGWQ-LDFAGGTLASAPVVVLANGHDA--ARFAQ  468 (662)
T ss_pred             HHHHHHHHHhccc-CcEEEeCCEeeEEEEeC-CEEE-EEECCCcEEECCEEEECCCCCc--ccccc
Confidence            5789999999988 99999999999999876 6655 8888887778999999999987  45543

>PRK06116 glutathione reductase; Validated

Probab=99.36  E-value=4.7e-13  Score=135.18  Aligned_cols=59  Identities=14%  Similarity=0.154  Sum_probs=48.7

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.++++|++++++++|++|..++++.+ .|++.+|+++.+|.||+++|...
T Consensus       207 ~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p  265 (450)
T PRK06116        207 DPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREP  265 (450)
T ss_pred             CHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCc
Confidence            457888889999999999999999999987652434 47788888899999999988654

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.34  E-value=1.4e-12  Score=128.16  Aligned_cols=252  Identities=17%  Similarity=0.225  Sum_probs=139.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhcCcccccchhhh
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKCGTRIGETWNEV   95 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~gl~~~~~~~~~   95 (531)
                      .+||++|||+|.+|.+||.++++.|.+|.|+|+...+||.|-...|.|...+-..+.........-...|+....     
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~-----   77 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEV-----   77 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCC-----
Confidence            479999999999999999999999999999999989999999998888644333332211111000011221110     


Q ss_pred             ccchhhhHHHH-HHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhh---hhhHHHHHHHHHhcChhhHHHHHHH
Q 048009           96 VEAKSIIVYAI-FEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRN---SAFWAHCLRRAISLGQKDLVEFVDL  171 (531)
Q Consensus        96 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  171 (531)
                       ..-+...... ..............++.....+...+.+.|.+...-....   ..+..+.+..+.++.+.... ....
T Consensus        78 -~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~-~~~~  155 (454)
T COG1249          78 -PKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPP-GPGI  155 (454)
T ss_pred             -CCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCC-CCCC
Confidence             0112222222 2223344455566677777788888888887743322222   12222222223222211110 0000


Q ss_pred             HhccHHHHhhcccCCh------hHHHHHh--hhhhhccCCCCCCCChHHHHHHHHhhcc----CCCCCccccccCchHHH
Q 048009          172 LLSPASKVLNKWFETD------VLKATLA--TDAVIGTMSSVHTPGSGYVLLHHVMGET----DGNPGIWSYVEGGMGSV  239 (531)
Q Consensus       172 ~~~~~~~~l~~~~~~~------~l~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~gG~~~l  239 (531)
                      ..       ..++.+.      .+...+.  +.+++|.         .+..+...++.-    +..+   ....+-...+
T Consensus       156 ~~-------~~~~~s~~~l~~~~lP~~lvIiGgG~IGl---------E~a~~~~~LG~~VTiie~~~---~iLp~~D~ei  216 (454)
T COG1249         156 DG-------ARILDSSDALFLLELPKSLVIVGGGYIGL---------EFASVFAALGSKVTVVERGD---RILPGEDPEI  216 (454)
T ss_pred             CC-------CeEEechhhcccccCCCEEEEECCCHHHH---------HHHHHHHHcCCcEEEEecCC---CCCCcCCHHH
Confidence            00       0011111      1112111  2233331         111111111110    1111   1234446789


Q ss_pred             HHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc--EEEcCeEEecCChHh
Q 048009          240 SMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       240 ~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ++.+.+.+++.|++++++++|++++..+ +. ..|++++|+  ++++|.|++|+|-..
T Consensus       217 ~~~~~~~l~~~gv~i~~~~~v~~~~~~~-~~-v~v~~~~g~~~~~~ad~vLvAiGR~P  272 (454)
T COG1249         217 SKELTKQLEKGGVKILLNTKVTAVEKKD-DG-VLVTLEDGEGGTIEADAVLVAIGRKP  272 (454)
T ss_pred             HHHHHHHHHhCCeEEEccceEEEEEecC-Ce-EEEEEecCCCCEEEeeEEEEccCCcc
Confidence            9999999999889999999999999876 44 458888876  688999999998554

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.34  E-value=1.6e-11  Score=120.80  Aligned_cols=57  Identities=21%  Similarity=0.236  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+...|.+.+.++ |++|+.+++|++|..   +   .|++.+|+ +.||+||+|+|++.  ..|++
T Consensus       145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~g~-i~a~~VV~A~G~~s--~~l~~  202 (365)
T TIGR03364       145 REAIPALAAYLAEQHGVEFHWNTAVTSVET---G---TVRTSRGD-VHADQVFVCPGADF--ETLFP  202 (365)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCeEEEEec---C---eEEeCCCc-EEeCEEEECCCCCh--hhhCc
Confidence            46788888887775 999999999999963   3   37787786 78999999999987  45654

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.34  E-value=8.5e-13  Score=132.65  Aligned_cols=48  Identities=33%  Similarity=0.595  Sum_probs=43.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCe
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGF   65 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~   65 (531)
                      +|||+|||||++|++||..|+++|++|+|+|+. .+||.|....|.+..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk   49 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKK   49 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccH
Confidence            699999999999999999999999999999995 699999887777763

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.33  E-value=1.3e-12  Score=132.68  Aligned_cols=58  Identities=22%  Similarity=0.265  Sum_probs=48.4

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.++++|++++++++|++|..++ +.+. +++.+|+++++|.||+++|...
T Consensus       215 d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~-~~~~-v~~~~g~~i~~D~vi~a~G~~p  272 (461)
T PRK05249        215 DDEISDALSYHLRDSGVTIRHNEEVEKVEGGD-DGVI-VHLKSGKKIKADCLLYANGRTG  272 (461)
T ss_pred             CHHHHHHHHHHHHHcCCEEEECCEEEEEEEeC-CeEE-EEECCCCEEEeCEEEEeecCCc
Confidence            45788899999999999999999999998765 4443 6677888899999999988655

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.31  E-value=1.9e-11  Score=112.39  Aligned_cols=61  Identities=20%  Similarity=0.281  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC-----------CcEEEcCeEEecCChHhHH
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD-----------GAQVHSSIVLSNATPYKTF  297 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~-----------g~~~~ad~VV~aa~~~~~~  297 (531)
                      ..+...|.+.+++.|++|+++++|+++..++++++.+|.+.+           ..++.|+.||.|+|.+..+
T Consensus       104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v  175 (257)
T PRK04176        104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEV  175 (257)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHH
Confidence            467888888899999999999999999886634788877642           2368999999999977743

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.31  E-value=5.7e-11  Score=117.08  Aligned_cols=61  Identities=28%  Similarity=0.415  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc-----EEEcCeEEecCChHhHHhhcCC
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA-----QVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~-----~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      .|+...+..+.++|++|+..++|+++..++ | +++|++.|.+     ++.|+.||.|||||.  .+++.
T Consensus       165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~-~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~--d~i~~  230 (532)
T COG0578         165 RLVAANARDAAEHGAEILTYTRVESLRREG-G-VWGVEVEDRETGETYEIRARAVVNAAGPWV--DEILE  230 (532)
T ss_pred             HHHHHHHHHHHhcccchhhcceeeeeeecC-C-EEEEEEEecCCCcEEEEEcCEEEECCCccH--HHHHH
Confidence            678888888999999999999999999988 7 8999987633     588999999999998  56554

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.29  E-value=2.9e-11  Score=110.75  Aligned_cols=62  Identities=23%  Similarity=0.273  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCC--ceeEEEeCC-----------CcEEEcCeEEecCChHhHHhhc
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSG--RVNGVQLAD-----------GAQVHSSIVLSNATPYKTFMDL  300 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g--~~~~V~~~~-----------g~~~~ad~VV~aa~~~~~~~~l  300 (531)
                      .+...|.+.+.+.|++|+.++.|++|..++ +  ++.+|.++.           ..+++|+.||.|+|....+.++
T Consensus       101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~-~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~  175 (254)
T TIGR00292       101 EFISTLASKALQAGAKIFNGTSVEDLITRD-DTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAV  175 (254)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeC-CCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHH
Confidence            677778888889999999999999999876 5  688887752           2368999999999866544443

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.28  E-value=4.9e-11  Score=101.18  Aligned_cols=41  Identities=49%  Similarity=0.823  Sum_probs=39.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      ..||+|||||++||+||++|+++|.+|+||||+-.+||-+.
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w   70 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW   70 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence            57999999999999999999999999999999999999865

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.27  E-value=2.8e-12  Score=129.10  Aligned_cols=48  Identities=35%  Similarity=0.578  Sum_probs=43.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCe
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGF   65 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~   65 (531)
                      +|||+|||||++|++||..++++|++|+|+|+ +.+||.|....|.|..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~~gciPsk   49 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVIRGCVPKK   49 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeecCCcCchH
Confidence            59999999999999999999999999999999 5899999887777653

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PLN02546 glutathione reductase

Probab=99.27  E-value=4.8e-12  Score=129.01  Aligned_cols=53  Identities=28%  Similarity=0.443  Sum_probs=45.8

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEcc---------CCCCCceeecccccCCeee
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLER---------RHVIGGAAVTEELIPGFKF   67 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~---------~~~~GG~~~s~~~~~g~~~   67 (531)
                      ..+|||+|||||.+|+.||..++++|++|+|+|+         ...+||.|-...|+|...+
T Consensus        77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l  138 (558)
T PLN02546         77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLL  138 (558)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHH
Confidence            3469999999999999999999999999999996         2568999998888775433

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.27  E-value=4.6e-11  Score=124.12  Aligned_cols=59  Identities=29%  Similarity=0.532  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecC-CCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMIND-SGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+..+|++.++++|++|+.+++|++|..++ ++++++|++   .+|+  ++.+|.||+|+|+|.
T Consensus       232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws  296 (627)
T PLN02464        232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC  296 (627)
T ss_pred             HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence            5789999999999999999999999998763 277777776   2344  579999999999996

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.26  E-value=5.6e-11  Score=118.72  Aligned_cols=61  Identities=28%  Similarity=0.405  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhc
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDL  300 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~l  300 (531)
                      .+-+.|.+.+++.|++|+.+++|++|..++ +++.+|+ .+|.++.||.||.|.|....+.+.
T Consensus       109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~-g~v~~v~-~~g~~i~A~~VI~A~G~~s~l~~~  169 (428)
T PRK10157        109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRD-GKVVGVE-ADGDVIEAKTVILADGVNSILAEK  169 (428)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEeC-CEEEEEE-cCCcEEECCEEEEEeCCCHHHHHH
Confidence            566778888889999999999999998876 7766555 456679999999999987755443

>TIGR00136 gidA glucose-inhibited division protein A

Probab=99.26  E-value=2.8e-10  Score=114.48  Aligned_cols=57  Identities=19%  Similarity=0.362  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+...+.+.+++. |++++ ...|+++..++++++.+|.+.+|..+.|+.||+|+|.+.
T Consensus        97 ~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        97 LYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             HHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence            5667777778877 56776 457888877632788999999998999999999999985

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.26  E-value=4.3e-12  Score=128.76  Aligned_cols=49  Identities=37%  Similarity=0.648  Sum_probs=44.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCe
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGF   65 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~   65 (531)
                      .+|||+|||||++|++||..|+++|++|+|+|+.. +||.|....+.+..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k   51 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSK   51 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcH
Confidence            46999999999999999999999999999999977 99999877776654

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.26  E-value=3.6e-12  Score=129.43  Aligned_cols=48  Identities=40%  Similarity=0.661  Sum_probs=43.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCe
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGF   65 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~   65 (531)
                      .|||+|||||++|++||.+|+++|++|+|+|+ +.+||.|....+.+..
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk   48 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTK   48 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchH
Confidence            38999999999999999999999999999999 8899999877666653

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.25  E-value=6.1e-11  Score=120.50  Aligned_cols=63  Identities=25%  Similarity=0.376  Sum_probs=51.9

Q ss_pred             ccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CC--cEEEcCeEEecCChHh
Q 048009          232 VEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DG--AQVHSSIVLSNATPYK  295 (531)
Q Consensus       232 ~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g--~~~~ad~VV~aa~~~~  295 (531)
                      +.++...+...|.+.+++.|++|+++++|++|..++ +++++|++.  +|  ..+.++.||+|+|.+.
T Consensus       126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~-g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~  192 (466)
T PRK08274        126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALELDD-GRFVGARAGSAAGGAERIRAKAVVLAAGGFE  192 (466)
T ss_pred             ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence            344456789999999999999999999999999876 888888773  33  3578999999998764

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.25  E-value=1.4e-10  Score=118.13  Aligned_cols=57  Identities=28%  Similarity=0.379  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC---Cc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD---GA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~---g~--~~~ad~VV~aa~~~~  295 (531)
                      ..++..+.+.++++|++++.+++|++|..++ +. ++|++.+   |+  ++.|+.||+|+|+|.
T Consensus       155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~-~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa  216 (508)
T PRK12266        155 ARLVVLNARDAAERGAEILTRTRVVSARREN-GL-WHVTLEDTATGKRYTVRARALVNAAGPWV  216 (508)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC-CE-EEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence            4677888888999999999999999998765 54 4566653   53  689999999999987

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.24  E-value=1.4e-10  Score=118.37  Aligned_cols=58  Identities=19%  Similarity=0.338  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+.+.|.+.+++.|++|+++++|++|..++ |++++|++.  +++  ++.++.||+|+|.+.
T Consensus       190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~-g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~  251 (506)
T PRK06481        190 GYLVDGLLKNVQERKIPLFVNADVTKITEKD-GKVTGVKVKINGKETKTISSKAVVVTTGGFG  251 (506)
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCeeEEEEecC-CEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence            3678889999999999999999999998776 888887764  333  588999999998665

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.24  E-value=1.1e-11  Score=124.88  Aligned_cols=49  Identities=41%  Similarity=0.561  Sum_probs=42.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC-CCceeecccccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV-IGGAAVTEELIPG   64 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~-~GG~~~s~~~~~g   64 (531)
                      ++|||+|||||++|++||..|+++|++|+|+|+++. +||.|....+.+.
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~   51 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPT   51 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccc
Confidence            469999999999999999999999999999999874 6999876555543

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.24  E-value=8.4e-11  Score=118.41  Aligned_cols=58  Identities=19%  Similarity=0.231  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..++.+|.+.++++|++|+++++|++|..++++.+. |++   .+|+  ++.||+||+|||.+.
T Consensus       178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~~~~g~~~~i~A~~VV~AAG~~s  240 (483)
T TIGR01320       178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWT-VTVKNTRTGGKRTLNTRFVFVGAGGGA  240 (483)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEE-EEEeeccCCceEEEECCEEEECCCcch
Confidence            589999999999999999999999999986524433 443   2342  589999999999987

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=99.24  E-value=4.8e-11  Score=115.03  Aligned_cols=65  Identities=23%  Similarity=0.300  Sum_probs=52.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCee-ecccchhhhcchhhhh
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFK-FSRCSYLQSLLRPSLI   82 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~-~d~g~~~~~~~~~~~~   82 (531)
                      ++||+|||||++||++|+.|++.|.+|+|+|+++.+||.|.+.. ..|.. .+.|++++....+.++
T Consensus         1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~-~~g~~~~~~G~h~f~t~~~~v~   66 (377)
T TIGR00031         1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEV-DETILFHQYGPHIFHTNNQYVW   66 (377)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeec-CCCceEEeecceeEecCcHHHH
Confidence            37999999999999999999999999999999999999998765 34443 4778777654444433

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.23  E-value=1e-11  Score=125.85  Aligned_cols=47  Identities=36%  Similarity=0.617  Sum_probs=42.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPG   64 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g   64 (531)
                      +|||+|||||++|++||.+|+++|++|+|+|+ ..+||.|....+.+.
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~~~gciPs   50 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCLNVGCIPS   50 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceecCCcccc
Confidence            59999999999999999999999999999998 478999988776664

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.23  E-value=5.1e-12  Score=127.75  Aligned_cols=50  Identities=34%  Similarity=0.622  Sum_probs=45.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCe
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGF   65 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~   65 (531)
                      .+|||+|||||++|++||.+++++|++|+|+|+++.+||.|....|.|..
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK   51 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSK   51 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccH
Confidence            46999999999999999999999999999999988899999887777764

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.23  E-value=1.4e-11  Score=124.16  Aligned_cols=259  Identities=15%  Similarity=0.175  Sum_probs=129.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHc-CCcEEEEccC--------CCCCceeecccccCCeeecccchhhhcchhhhhhcCc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARA-GLSVAVLERR--------HVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKCGT   86 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~-G~~V~v~E~~--------~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~gl   86 (531)
                      .+|||+|||||.+|.+||..++++ |.+|+|+|+.        ..+||.|-...|.|...+-..+........ ....|+
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~-~~~~gi   80 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRE-SAGFGW   80 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHH-hhccCe
Confidence            579999999999999999999997 9999999984        579999999888876443333222111110 011132


Q ss_pred             ccccchhhhccchhhhHH-HHHHHHHHHHHHHHHHhhcC-CCcccccCCCcchhhhhhhhh---------hhhhHHHHHH
Q 048009           87 RIGETWNEVVEAKSIIVY-AIFEDQLDKFSQFVDLLFDS-SPPELLQGSSSYSHQFKNKIR---------NSAFWAHCLR  155 (531)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~  155 (531)
                      ....  ..  ...+.... .........+......++.. ...+.+.+...|.+.....+.         ...+..+.+.
T Consensus        81 ~~~~--~~--~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lI  156 (486)
T TIGR01423        81 EFDR--SS--VKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHIL  156 (486)
T ss_pred             eccC--Cc--cccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEE
Confidence            1000  00  00112111 22223334444444455544 366667666666664332221         0112222222


Q ss_pred             HHHhcChh--hHHHHHHHHhccHHHHhhcccCChhHHHHH-hhhhhhccCCCCCCCChHHHHHHHHh---h--ccCCCCC
Q 048009          156 RAISLGQK--DLVEFVDLLLSPASKVLNKWFETDVLKATL-ATDAVIGTMSSVHTPGSGYVLLHHVM---G--ETDGNPG  227 (531)
Q Consensus       156 ~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~---~--~~~~~~~  227 (531)
                      .+.+..+.  .+..... . .+..+.+.  ... .-+.++ .+.+++|         ..+..+...+   +  .+....+
T Consensus       157 IATGs~p~~p~i~G~~~-~-~~~~~~~~--~~~-~~~~vvIIGgG~iG---------~E~A~~~~~l~~~G~~Vtli~~~  222 (486)
T TIGR01423       157 LATGSWPQMLGIPGIEH-C-ISSNEAFY--LDE-PPRRVLTVGGGFIS---------VEFAGIFNAYKPRGGKVTLCYRN  222 (486)
T ss_pred             EecCCCCCCCCCCChhh-e-echhhhhc--ccc-CCCeEEEECCCHHH---------HHHHHHHHHhccCCCeEEEEecC
Confidence            22222111  0000000 0 01111110  000 000110 0111111         0111100000   0  0000000


Q ss_pred             ccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          228 IWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       228 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .. ....-...+.+.+.+.++++|+++++++.|++|..++ +....|++.+|+++.+|.||+++|...
T Consensus       223 ~~-il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~-~~~~~v~~~~g~~i~~D~vl~a~G~~P  288 (486)
T TIGR01423       223 NM-ILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNA-DGSKHVTFESGKTLDVDVVMMAIGRVP  288 (486)
T ss_pred             Cc-cccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcC-CceEEEEEcCCCEEEcCEEEEeeCCCc
Confidence            00 1112236788999999999999999999999998765 333447777888899999999988554

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.23  E-value=9.2e-11  Score=119.72  Aligned_cols=57  Identities=23%  Similarity=0.273  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC----cEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG----AQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g----~~~~ad~VV~aa~~~~  295 (531)
                      ..+...+...++++|++++.+++|++|..++ +. +.|++.++    .++.|+.||.|+|+|.
T Consensus       155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~-~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa  215 (502)
T PRK13369        155 ARLVVLNALDAAERGATILTRTRCVSARREG-GL-WRVETRDADGETRTVRARALVNAAGPWV  215 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEecCcEEEEEEEcC-CE-EEEEEEeCCCCEEEEEecEEEECCCccH
Confidence            4677888888999999999999999999875 43 45776654    2589999999999997

>PRK06370 mercuric reductase; Validated

Probab=99.21  E-value=1.6e-11  Score=124.51  Aligned_cols=49  Identities=39%  Similarity=0.698  Sum_probs=43.4

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPG   64 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g   64 (531)
                      +.+|||+|||||++|++||.+|+++|++|+|+|+. .+||.|....|.+.
T Consensus         3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPs   51 (463)
T PRK06370          3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPT   51 (463)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcH
Confidence            35699999999999999999999999999999995 68999877666654

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.20  E-value=7.3e-11  Score=116.93  Aligned_cols=65  Identities=17%  Similarity=0.153  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCC
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPG  303 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~  303 (531)
                      .+.+.|++.+++.|++++.+++|+.+..++ +.+..++..++.+++|+.||.|.|+...+.+.+..
T Consensus        96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~  160 (396)
T COG0644          96 KFDKWLAERAEEAGAELYPGTRVTGVIRED-DGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGL  160 (396)
T ss_pred             HhhHHHHHHHHHcCCEEEeceEEEEEEEeC-CcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCC
Confidence            667789999999999999999999999988 55444444454679999999999988877665543

>PLN02507 glutathione reductase

Probab=99.20  E-value=1.7e-11  Score=124.39  Aligned_cols=58  Identities=16%  Similarity=0.247  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.++++|++|+++++|++|..++ +.+ .|.+.+|+++.+|.||+++|...
T Consensus       243 d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~p  300 (499)
T PLN02507        243 DDEMRAVVARNLEGRGINLHPRTNLTQLTKTE-GGI-KVITDHGEEFVADVVLFATGRAP  300 (499)
T ss_pred             CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CeE-EEEECCCcEEEcCEEEEeecCCC
Confidence            45788888889999999999999999998755 443 36777888899999999888554

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.19  E-value=1e-09  Score=112.79  Aligned_cols=64  Identities=25%  Similarity=0.380  Sum_probs=51.5

Q ss_pred             cccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC-CCc--EEEc-CeEEecCChHhH
Q 048009          231 YVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA-DGA--QVHS-SIVLSNATPYKT  296 (531)
Q Consensus       231 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~--~~~a-d~VV~aa~~~~~  296 (531)
                      +..+| ..|...|.+.+++.|++|+++++|+++..++ |+|+||... +|+  .+.+ +.||+|+|-+..
T Consensus       212 ~~~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~-g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~  279 (564)
T PRK12845        212 YAAGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDG-GRVTGAVVDHRGREVTVTARRGVVLAAGGFDH  279 (564)
T ss_pred             ccCCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecC-CEEEEEEEEECCcEEEEEcCCEEEEecCCccc
Confidence            34555 7899999999999999999999999998766 899998664 443  3556 469999998774

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.18  E-value=2e-10  Score=115.20  Aligned_cols=60  Identities=32%  Similarity=0.494  Sum_probs=49.4

Q ss_pred             chHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009          235 GMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA---DGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       235 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~  295 (531)
                      +...+...|.+.++++|++|+++++|+++..++ ++|++|...   +|+  .+.|+.||+|+|...
T Consensus       139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~-g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~  203 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITED-GRVTGVVAENPADGEFVRIKAKAVILATGGFG  203 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEET-TEEEEEEEEETTTCEEEEEEESEEEE----BG
T ss_pred             cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeC-CceeEEEEEECCCCeEEEEeeeEEEeccCccc
Confidence            456899999999999999999999999999987 899999887   454  578999999999877

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=99.18  E-value=1e-08  Score=100.83  Aligned_cols=57  Identities=21%  Similarity=0.411  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..++.+|+..+.+.|+.|..++.|++|.... ++..+|.+.-|. +++.+||.|||.|.
T Consensus       187 ~~lC~ala~~A~~~GA~viE~cpV~~i~~~~-~~~~gVeT~~G~-iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  187 AGLCQALARAASALGALVIENCPVTGLHVET-DKFGGVETPHGS-IETECVVNAAGVWA  243 (856)
T ss_pred             HHHHHHHHHHHHhcCcEEEecCCcceEEeec-CCccceeccCcc-eecceEEechhHHH
Confidence            5789999999999999999999999999988 666799999997 99999999999998

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.18  E-value=2.5e-10  Score=115.19  Aligned_cols=60  Identities=17%  Similarity=0.260  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CCc--EEEcCeEEecCChHhH
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DGA--QVHSSIVLSNATPYKT  296 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~--~~~ad~VV~aa~~~~~  296 (531)
                      ..+.+.|.+.+++.|++|+++++|++|..++++++++|++.  +++  .+.++.||+|+|.+..
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence            46889999999999999999999999998654788887764  343  4689999999998763

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.18  E-value=1.3e-10  Score=99.51  Aligned_cols=42  Identities=50%  Similarity=0.785  Sum_probs=35.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      .++||+|||||++||+||++|+++|++|+|+|++..+||.+.
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~   57 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW   57 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence            469999999999999999999999999999999999998864

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.18  E-value=3e-11  Score=121.79  Aligned_cols=48  Identities=40%  Similarity=0.654  Sum_probs=42.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC-CCCceeecccccC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH-VIGGAAVTEELIP   63 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~-~~GG~~~s~~~~~   63 (531)
                      ++|||+|||||++|++||.+|+++|++|+|+|+.+ .+||.|....+.+
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip   50 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIP   50 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccc
Confidence            46999999999999999999999999999999976 4899997765544

>PTZ00058 glutathione reductase; Provisional

Probab=99.17  E-value=3.5e-11  Score=122.70  Aligned_cols=52  Identities=35%  Similarity=0.563  Sum_probs=46.2

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeee
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKF   67 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~   67 (531)
                      ..+|||+|||||.+|++||..+++.|.+|+|+|++ .+||.|-..+|.|...+
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l   97 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIM   97 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchh
Confidence            34699999999999999999999999999999995 79999998888876433

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.17  E-value=4.4e-09  Score=104.08  Aligned_cols=65  Identities=18%  Similarity=0.197  Sum_probs=56.8

Q ss_pred             hHHHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCceeEEEeC-CCcEEEcCeEEecCChHhHHhhcCC
Q 048009          236 MGSVSMAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQLA-DGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ...|.+.|.+.+.+.+ ++++++++|+.+..++ +.+. |+++ ||+++.||.||-|=|.++.+.+.+.
T Consensus       103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~  169 (387)
T COG0654         103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGVT-VTLSFDGETLDADLLVGADGANSAVRRAAG  169 (387)
T ss_pred             hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-CceE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence            3588999999998887 8999999999999987 6776 8888 9999999999998888888777765

>PRK10015 oxidoreductase; Provisional

Probab=99.17  E-value=2.5e-10  Score=113.97  Aligned_cols=60  Identities=18%  Similarity=0.253  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhh
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMD  299 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~  299 (531)
                      .+-..|.+.+++.|++++.+++|++|..++ +++.+|+.. +.++.||.||.|.|....+.+
T Consensus       109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~-~~v~~v~~~-~~~i~A~~VI~AdG~~s~v~~  168 (429)
T PRK10015        109 RLDPWLMEQAEQAGAQFIPGVRVDALVREG-NKVTGVQAG-DDILEANVVILADGVNSMLGR  168 (429)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeC-CEEEEEEeC-CeEEECCEEEEccCcchhhhc
Confidence            566678888889999999999999998876 777666654 456999999999998775544

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.17  E-value=1.4e-11  Score=125.19  Aligned_cols=49  Identities=35%  Similarity=0.646  Sum_probs=44.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCe
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGF   65 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~   65 (531)
                      ..|||+|||||.+|++||.+|+++|++|+|+|+. .+||.|....|.+..
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk   51 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSK   51 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchH
Confidence            4699999999999999999999999999999995 799999887777653

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.16  E-value=8.9e-10  Score=110.17  Aligned_cols=58  Identities=17%  Similarity=0.166  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCceeEEE---eCCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAARE-AGAHIVTRAEVSQLMINDSGRVNGVQ---LADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g~~~~V~---~~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+.++|.+.+.+ .|++|+++++|++|..++++.+. |+   +.+|+  ++.||+||+|||.|.
T Consensus       184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS  247 (497)
T PRK13339        184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVADYVFIGAGGGA  247 (497)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcCEEEECCCcch
Confidence            4788888888865 48999999999999887325543 44   34453  589999999999998

>PRK07121 hypothetical protein; Validated

Probab=99.16  E-value=1.1e-09  Score=111.96  Aligned_cols=61  Identities=23%  Similarity=0.374  Sum_probs=50.6

Q ss_pred             chHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC-Cc--EEEc-CeEEecCChHh
Q 048009          235 GMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD-GA--QVHS-SIVLSNATPYK  295 (531)
Q Consensus       235 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~-g~--~~~a-d~VV~aa~~~~  295 (531)
                      +...+...|.+.+++.|++|+++++|++|..+++|++++|+..+ ++  .+.+ +.||+|+|.+.
T Consensus       175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~  239 (492)
T PRK07121        175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA  239 (492)
T ss_pred             chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence            34578999999999999999999999999887537898887753 33  5778 99999999776

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.16  E-value=5.3e-10  Score=111.88  Aligned_cols=43  Identities=42%  Similarity=0.571  Sum_probs=40.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      ...+|+|||||++||+||.+|++.|++|+|||+++.+||.+..
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~   51 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY   51 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence            4689999999999999999999999999999999999998754

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.15  E-value=5e-10  Score=112.90  Aligned_cols=58  Identities=21%  Similarity=0.277  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+.++|.+.+++.| ++|+++++|++|..++++.+. |++   .+|+  ++.|++||+|+|.+.
T Consensus       183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~-v~~~~~~~G~~~~i~A~~VVvaAGg~s  246 (494)
T PRK05257        183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWT-VTVKDLKTGEKRTVRAKFVFIGAGGGA  246 (494)
T ss_pred             HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEE-EEEEEcCCCceEEEEcCEEEECCCcch
Confidence            578999999999987 799999999999986534443 443   3453  589999999999987

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=99.15  E-value=1e-11  Score=113.70  Aligned_cols=260  Identities=18%  Similarity=0.240  Sum_probs=141.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhh-hcCcccccchhh
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLI-KCGTRIGETWNE   94 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~-~~gl~~~~~~~~   94 (531)
                      .++||+|||+|++|-.||...++.|++...+|++..+||.|-..+|.|...+-.-+|.+.......+ ..|++..    .
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs----~  113 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVS----S  113 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCcccc----c
Confidence            5699999999999999999999999999999999999999999888876544444444333333222 2244311    0


Q ss_pred             hccchhhhHHH-HHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhh-----hhHHHHHHHHHhcChhhHHHH
Q 048009           95 VVEAKSIIVYA-IFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNS-----AFWAHCLRRAISLGQKDLVEF  168 (531)
Q Consensus        95 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  168 (531)
                        ...+..... ........+...+..++.........+...|.+.-.-.+...     ..-.+.+..+.++.....+.+
T Consensus       114 --~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI  191 (506)
T KOG1335|consen  114 --VSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGI  191 (506)
T ss_pred             --eecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCCCe
Confidence              112222222 223345667777777887777777777777776544332111     000111111111111110000


Q ss_pred             HHHHhccHHHHhhcccCChhHHHHHh--hhhhhcc-CCCC-CCCChHHHHHHHHhhccCCCCCccccccCc-hHHHHHHH
Q 048009          169 VDLLLSPASKVLNKWFETDVLKATLA--TDAVIGT-MSSV-HTPGSGYVLLHHVMGETDGNPGIWSYVEGG-MGSVSMAI  243 (531)
Q Consensus       169 ~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~~g~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG-~~~l~~~l  243 (531)
                       ..+....-. -..-++-..+...+.  +.+++|. +.+. ...++....+.       +..    .+.++ ..++..++
T Consensus       192 -~IDekkIVS-StgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VE-------f~~----~i~~~mD~Eisk~~  258 (506)
T KOG1335|consen  192 -TIDEKKIVS-STGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVE-------FLD----QIGGVMDGEISKAF  258 (506)
T ss_pred             -EecCceEEe-cCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEE-------ehh----hhccccCHHHHHHH
Confidence             000000000 000011111111121  3344442 1111 11111111111       100    11111 34799999


Q ss_pred             HHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC---C--cEEEcCeEEecCChHh
Q 048009          244 GSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD---G--AQVHSSIVLSNATPYK  295 (531)
Q Consensus       244 ~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~---g--~~~~ad~VV~aa~~~~  295 (531)
                      .+.++++|.+++++++|..+..++||.+. |.+.|   +  ++++||.+++++|-..
T Consensus       259 qr~L~kQgikF~l~tkv~~a~~~~dg~v~-i~ve~ak~~k~~tle~DvlLVsiGRrP  314 (506)
T KOG1335|consen  259 QRVLQKQGIKFKLGTKVTSATRNGDGPVE-IEVENAKTGKKETLECDVLLVSIGRRP  314 (506)
T ss_pred             HHHHHhcCceeEeccEEEEeeccCCCceE-EEEEecCCCceeEEEeeEEEEEccCcc
Confidence            99999999999999999999998866554 66643   3  3789999999888554

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.15  E-value=5.3e-11  Score=121.05  Aligned_cols=58  Identities=16%  Similarity=0.110  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.+++.|+++++++.|++|...+ +.+ .|.+.+|+++.+|.||+++|...
T Consensus       221 d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~p  278 (499)
T PTZ00052        221 DRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DKI-KVLFSDGTTELFDTVLYATGRKP  278 (499)
T ss_pred             CHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-CeE-EEEECCCCEEEcCEEEEeeCCCC
Confidence            45678888999999999999999999998755 443 47778888899999999988655

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.14  E-value=1.3e-10  Score=104.34  Aligned_cols=56  Identities=18%  Similarity=0.159  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+.+.|.+.+++.+.+++++++|++|..++ ++ +.|++.+++++.||+||+|+|...
T Consensus        83 ~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~-~~-w~v~~~~~~~~~a~~VVlAtG~~~  138 (203)
T PF13738_consen   83 EVLDYLQEYAERFGLEIRFNTRVESVRRDG-DG-WTVTTRDGRTIRADRVVLATGHYS  138 (203)
T ss_dssp             HHHHHHHHHHHHTTGGEETS--EEEEEEET-TT-EEEEETTS-EEEEEEEEE---SSC
T ss_pred             HHHHHHHHHHhhcCcccccCCEEEEEEEec-cE-EEEEEEecceeeeeeEEEeeeccC
Confidence            566777788888899999999999999987 56 559999997899999999999654

...

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.13  E-value=4.4e-11  Score=121.38  Aligned_cols=59  Identities=14%  Similarity=0.175  Sum_probs=46.2

Q ss_pred             chHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC--C--cEEEcCeEEecCChHh
Q 048009          235 GMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD--G--AQVHSSIVLSNATPYK  295 (531)
Q Consensus       235 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~--g--~~~~ad~VV~aa~~~~  295 (531)
                      ....+.+.+.+.++++|++|+++++|++|..++ +.+. |.+.+  |  +++.+|.||+++|...
T Consensus       222 ~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v~-v~~~~~~g~~~~i~~D~vl~a~G~~p  284 (475)
T PRK06327        222 ADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG-KGVS-VAYTDADGEAQTLEVDKLIVSIGRVP  284 (475)
T ss_pred             CCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC-CEEE-EEEEeCCCceeEEEcCEEEEccCCcc
Confidence            346788888899999999999999999998765 4443 55544  3  4689999999888554

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.13  E-value=1.9e-09  Score=111.84  Aligned_cols=58  Identities=21%  Similarity=0.402  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC--Cc-EEEcC-eEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD--GA-QVHSS-IVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~--g~-~~~ad-~VV~aa~~~~  295 (531)
                      ..+...|.+.+++.|++|+++++|++|..++ +++++|++.+  ++ .+.++ .||+|+|.+.
T Consensus       214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~-g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~  275 (574)
T PRK12842        214 NALAARLAKSALDLGIPILTGTPARELLTEG-GRVVGARVIDAGGERRITARRGVVLACGGFS  275 (574)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-CEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence            5788999999999999999999999999887 8898888754  33 46786 6999999775

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.12  E-value=7e-10  Score=110.29  Aligned_cols=63  Identities=21%  Similarity=0.312  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      ..+.+.|.+.+++.|++++++++|++|..++ +.+. |++++|+++.+|.||.|.|.+..+.+.+
T Consensus       113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~a~~vV~AdG~~S~vr~~~  175 (392)
T PRK08773        113 DLLVDRLWAALHAAGVQLHCPARVVALEQDA-DRVR-LRLDDGRRLEAALAIAADGAASTLRELA  175 (392)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEecC-CeEE-EEECCCCEEEeCEEEEecCCCchHHHhh
Confidence            4678888888889999999999999999876 5554 8888888899999999999887655554

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.12  E-value=2.9e-09  Score=110.37  Aligned_cols=58  Identities=22%  Similarity=0.362  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CCc-EEEc-CeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DGA-QVHS-SIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~-~~~a-d~VV~aa~~~~  295 (531)
                      ..++..|.+.++++|++|+++++|++|..++ +++++|+..  ++. .+.+ +.||+|+|.+.
T Consensus       217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~-g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~  278 (581)
T PRK06134        217 NALVARLLKSAEDLGVRIWESAPARELLRED-GRVAGAVVETPGGLQEIRARKGVVLAAGGFP  278 (581)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence            4688999999999999999999999998876 888888764  332 4788 89999999886

>PRK07190 hypothetical protein; Provisional

Probab=99.12  E-value=6.3e-10  Score=112.65  Aligned_cols=63  Identities=17%  Similarity=0.257  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      .+-+.|.+.+++.|++|+++++|++|..++ +.+. +.+.+|+++.|++||.|.|..++..+.+.
T Consensus       110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~-~~v~-v~~~~g~~v~a~~vVgADG~~S~vR~~lg  172 (487)
T PRK07190        110 YVEKLLDDKLKEAGAAVKRNTSVVNIELNQ-AGCL-TTLSNGERIQSRYVIGADGSRSFVRNHFN  172 (487)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CeeE-EEECCCcEEEeCEEEECCCCCHHHHHHcC
Confidence            455667777888999999999999999877 5544 56678888999999999999887776654

>PRK06847 hypothetical protein; Provisional

Probab=99.11  E-value=8e-10  Score=109.36  Aligned_cols=63  Identities=25%  Similarity=0.367  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      ..+.+.|.+.+++.|++|+++++|++|..++ +.+ .|.+.+|+++.+|.||.|.|.+....+.+
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~~-~v~~~~g~~~~ad~vI~AdG~~s~~r~~l  169 (375)
T PRK06847        107 PALARILADAARAAGADVRLGTTVTAIEQDD-DGV-TVTFSDGTTGRYDLVVGADGLYSKVRSLV  169 (375)
T ss_pred             HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC-CEE-EEEEcCCCEEEcCEEEECcCCCcchhhHh
Confidence            3678888888888899999999999998776 554 47888998999999999999887655443

>PRK14694 putative mercuric reductase; Provisional

Probab=99.09  E-value=1.2e-10  Score=118.04  Aligned_cols=51  Identities=29%  Similarity=0.520  Sum_probs=44.8

Q ss_pred             ccCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCC
Q 048009           13 LKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPG   64 (531)
Q Consensus        13 ~~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g   64 (531)
                      |...+|||+|||||++|++||..|++.|++|+|+|+. .+||.|....|.|.
T Consensus         2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPs   52 (468)
T PRK14694          2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPS   52 (468)
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCcccc
Confidence            3456899999999999999999999999999999996 69999987666554

>PRK06834 hypothetical protein; Provisional

Probab=99.09  E-value=1.2e-09  Score=110.88  Aligned_cols=62  Identities=18%  Similarity=0.238  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      .+-+.|.+.+++.|++|+++++|++|..++ +.+. |++.+|+++.+|+||.|.|.++...+.+
T Consensus       101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~-~~v~-v~~~~g~~i~a~~vVgADG~~S~vR~~l  162 (488)
T PRK06834        101 HIERILAEWVGELGVPIYRGREVTGFAQDD-TGVD-VELSDGRTLRAQYLVGCDGGRSLVRKAA  162 (488)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-CeEE-EEECCCCEEEeCEEEEecCCCCCcHhhc
Confidence            567778888888899999999999999877 5544 7777888899999999999888666555

>PRK06184 hypothetical protein; Provisional

Probab=99.08  E-value=1.1e-09  Score=112.27  Aligned_cols=63  Identities=10%  Similarity=0.081  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      .+-+.|.+.+.+.|++|+++++|++|..++ +.++ +++   .+++++.||+||.|.|.++...+.+.
T Consensus       110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~-~~v~-v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg  175 (502)
T PRK06184        110 RTERILRERLAELGHRVEFGCELVGFEQDA-DGVT-ARVAGPAGEETVRARYLVGADGGRSFVRKALG  175 (502)
T ss_pred             HHHHHHHHHHHHCCCEEEeCcEEEEEEEcC-CcEE-EEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence            456677788888899999999999999876 5544 445   55668999999999999987777664

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.08  E-value=1.4e-09  Score=113.45  Aligned_cols=55  Identities=22%  Similarity=0.350  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009          240 SMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA---DGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       240 ~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~  295 (531)
                      .+.|.+.+++.|++|++++.|+++..++ |+|.||...   +|+  .+.|+.||+|+|...
T Consensus       173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~-g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g  232 (640)
T PRK07573        173 YQALSRQIAAGTVKMYTRTEMLDLVVVD-GRARGIVARNLVTGEIERHTADAVVLATGGYG  232 (640)
T ss_pred             HHHHHHHHHhcCCEEEeceEEEEEEEeC-CEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence            3667777888999999999999999877 899998874   454  578999999999876

>PRK14727 putative mercuric reductase; Provisional

Probab=99.08  E-value=8.6e-11  Score=119.31  Aligned_cols=50  Identities=30%  Similarity=0.502  Sum_probs=45.5

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPG   64 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g   64 (531)
                      +.++||+|||||.+|++||..|+++|.+|+|+|+.+.+||.|....|.+.
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPs   63 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPS   63 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecccccccc
Confidence            45799999999999999999999999999999999899999987666654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.08  E-value=5.8e-11  Score=120.16  Aligned_cols=49  Identities=33%  Similarity=0.498  Sum_probs=44.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPG   64 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g   64 (531)
                      .+|||+|||||.+|++||..|+++|++|+|+|+.+.+||.|....|.|.
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~   51 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPS   51 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccH
Confidence            4699999999999999999999999999999998899999987766665

>PRK13748 putative mercuric reductase; Provisional

Probab=99.07  E-value=1.5e-10  Score=120.45  Aligned_cols=49  Identities=31%  Similarity=0.487  Sum_probs=44.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCe
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGF   65 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~   65 (531)
                      .+|||+|||||++|++||..|+++|.+|+|+|++ .+||.|...+|.|..
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk  145 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSK  145 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccH
Confidence            4699999999999999999999999999999997 899999877666653

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.07  E-value=1.2e-09  Score=109.35  Aligned_cols=64  Identities=17%  Similarity=0.278  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+.+.|.+.+.+.|++|+.+++|++|..++ +.+. |++.+|+++.+|.||.|.|.+..+.+.+.
T Consensus       111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v~-v~~~~g~~~~ad~vI~AdG~~S~vr~~~g  174 (403)
T PRK07333        111 RVLINALRKRAEALGIDLREATSVTDFETRD-EGVT-VTLSDGSVLEARLLVAADGARSKLRELAG  174 (403)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-CEEE-EEECCCCEEEeCEEEEcCCCChHHHHHcC
Confidence            4788888888888999999999999998776 5544 78888888999999999998876665543

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.06  E-value=7.7e-10  Score=105.64  Aligned_cols=63  Identities=22%  Similarity=0.277  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC-CCcEEEcCeEEecCChHhHHhhcC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA-DGAQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      ..+.+.|.+.+++.|++++++++|+++..++ +++. +.+. ++.++++|.||.|.|.+..+.+.+
T Consensus        91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~-~~~~-~~~~~~~~~~~a~~vv~a~G~~s~~~~~~  154 (295)
T TIGR02032        91 DAFDEQLAERAQEAGAELRLGTTVLDVEIHD-DRVV-VIVRGGEGTVTAKIVIGADGSRSIVAKKL  154 (295)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC-CEEE-EEEcCccEEEEeCEEEECCCcchHHHHhc
Confidence            3677788888889999999999999998876 5543 4444 345799999999999887555544

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK07045 putative monooxygenase; Reviewed

Probab=99.05  E-value=1.2e-09  Score=108.43  Aligned_cols=63  Identities=13%  Similarity=0.226  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhc
Q 048009          238 SVSMAIGSAARE-AGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDL  300 (531)
Q Consensus       238 ~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~l  300 (531)
                      .|.+.|.+.+.+ .|++++++++|++|..++++.++.|++++|+++.+|.||.|-|..+...+.
T Consensus       107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~  170 (388)
T PRK07045        107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRDD  170 (388)
T ss_pred             HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHHH
Confidence            566777777654 579999999999999876455567888899999999999999998877774

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.04  E-value=2.4e-09  Score=106.77  Aligned_cols=63  Identities=10%  Similarity=0.081  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009          237 GSVSMAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      ..+.+.|.+.+.+.| ++++++++|+++..++ +.+. |++.+|+++.||.||.|.|.+....+.+
T Consensus       109 ~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~-~~v~-v~~~~g~~~~ad~vV~AdG~~S~~r~~~  172 (396)
T PRK08163        109 ADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG-DGVT-VFDQQGNRWTGDALIGCDGVKSVVRQSL  172 (396)
T ss_pred             HHHHHHHHHHHHhcCCcEEEeCCEEEEEecCC-CceE-EEEcCCCEEecCEEEECCCcChHHHhhc
Confidence            357778888887765 8999999999998766 5554 7788888899999999999988665443

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.04  E-value=4.5e-09  Score=108.73  Aligned_cols=60  Identities=17%  Similarity=0.315  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC-CCc--EEEcC-eEEecCChHhH
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA-DGA--QVHSS-IVLSNATPYKT  296 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~--~~~ad-~VV~aa~~~~~  296 (531)
                      ..+...|.+.+++.|++|+++++|++|..+++|+|++|... +|+  .+.|+ .||+|+|...-
T Consensus       213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~  276 (584)
T PRK12835        213 QSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDH  276 (584)
T ss_pred             HHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccC
Confidence            46778888888999999999999999998744899998775 343  47787 49999998763

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.04  E-value=2.7e-09  Score=110.94  Aligned_cols=59  Identities=12%  Similarity=0.220  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..|...|.+.+++.|++|+.++.|+++..+++|+|.||..   .+|+  .+.|+.||+|+|...
T Consensus       166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  229 (617)
T PTZ00139        166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG  229 (617)
T ss_pred             HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence            4788999999999999999999999998833388998875   3564  578999999998765

>TIGR02053 MerA mercuric reductase

Probab=99.04  E-value=7.2e-11  Score=119.77  Aligned_cols=46  Identities=37%  Similarity=0.619  Sum_probs=41.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPG   64 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g   64 (531)
                      |||+|||||++|++||..|+++|++|+|+|+.. +||.|....|.+.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPs   46 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPS   46 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEcc
Confidence            799999999999999999999999999999975 8999877666665

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.04  E-value=2.8e-09  Score=102.05  Aligned_cols=54  Identities=20%  Similarity=0.259  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          239 VSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       239 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +...+.+.+++.|+++++ ++|++|+.++ +.+ .|++.+|+++.+|+||+|+|...
T Consensus        59 ~~~~l~~~~~~~gv~~~~-~~v~~v~~~~-~~~-~v~~~~~~~~~~d~liiAtG~~~  112 (300)
T TIGR01292        59 LMEKMKEQAVKFGAEIIY-EEVIKVDLSD-RPF-KVKTGDGKEYTAKAVIIATGASA  112 (300)
T ss_pred             HHHHHHHHHHHcCCeEEE-EEEEEEEecC-Cee-EEEeCCCCEEEeCEEEECCCCCc
Confidence            344555667788999998 8999998865 443 47788888899999999999754

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.03  E-value=1.3e-09  Score=108.38  Aligned_cols=64  Identities=17%  Similarity=0.232  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+.+.|.+.+.+.| ++|+.+++|++|..++ +.+. |++++|+++.+|.||.|.|.+..+.+.+.
T Consensus       106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~~~-v~~~~g~~~~~~~vi~adG~~S~vr~~l~  170 (385)
T TIGR01988       106 RVLQQALWERLQEYPNVTLLCPARVVELPRHS-DHVE-LTLDDGQQLRARLLVGADGANSKVRQLAG  170 (385)
T ss_pred             HHHHHHHHHHHHhCCCcEEecCCeEEEEEecC-CeeE-EEECCCCEEEeeEEEEeCCCCCHHHHHcC
Confidence            468888888888888 9999999999998876 6554 88889988999999999998876666553

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.03  E-value=4.2e-09  Score=108.67  Aligned_cols=59  Identities=20%  Similarity=0.420  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC-CCc--EEEcC-eEEecCChHhH
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA-DGA--QVHSS-IVLSNATPYKT  296 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~--~~~ad-~VV~aa~~~~~  296 (531)
                      ..+...|.+.+++.|++|+++++|++|..++ ++|++|+.. +|+  .+.++ .||+|+|....
T Consensus       208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~-g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~  270 (557)
T PRK07843        208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVED-GRVTGVHAAESGEPQLIRARRGVILASGGFEH  270 (557)
T ss_pred             HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC-CEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence            4678888888999999999999999999876 889888775 443  47786 59998887753

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.03  E-value=3e-10  Score=114.93  Aligned_cols=257  Identities=16%  Similarity=0.155  Sum_probs=124.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC--------CCCceeecccccCCeeecccchhhhcchhhhhhcCccc
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH--------VIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKCGTRI   88 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~--------~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~gl~~   88 (531)
                      +|||+|||||.+|+.||..+++.|.+|+|+|+..        .+||.|....|.|...+...+....... ..-..|+..
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~-~~~~~g~~~   80 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALK-DSRNYGWNV   80 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHh-hhhhcCccc
Confidence            5899999999999999999999999999999741        5899998888877643332222211100 000112210


Q ss_pred             ccchhhhccchhhhH-HHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhh---h--hhhHHHHHHHHHhcCh
Q 048009           89 GETWNEVVEAKSIIV-YAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIR---N--SAFWAHCLRRAISLGQ  162 (531)
Q Consensus        89 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~  162 (531)
                          ... ...+... ..+.......+......++.....+.+.+...|.+.......   +  ..+..+.+..+.+..+
T Consensus        81 ----~~~-~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p  155 (484)
T TIGR01438        81 ----EET-VKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERP  155 (484)
T ss_pred             ----CCC-cccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCC
Confidence                000 0011111 122223334444444555566666777776666664322111   0  0111222222222211


Q ss_pred             h--hHHHHHHHHhccHHHHhhcccCChhHHHHHhhhhhhccCCCCCCCChHHHHHHHHhh--ccCCCCCccccccCchHH
Q 048009          163 K--DLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMG--ETDGNPGIWSYVEGGMGS  238 (531)
Q Consensus       163 ~--~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~gG~~~  238 (531)
                      .  .+....+. ..+..+.+. .-..+. +-.+.+.+++|.         .+......++  .+......  ...+-...
T Consensus       156 ~~p~ipG~~~~-~~~~~~~~~-~~~~~~-~vvIIGgG~iG~---------E~A~~l~~~G~~Vtli~~~~--~l~~~d~~  221 (484)
T TIGR01438       156 RYPGIPGAKEL-CITSDDLFS-LPYCPG-KTLVVGASYVAL---------ECAGFLAGIGLDVTVMVRSI--LLRGFDQD  221 (484)
T ss_pred             CCCCCCCccce-eecHHHhhc-ccccCC-CEEEECCCHHHH---------HHHHHHHHhCCcEEEEEecc--cccccCHH
Confidence            1  00000000 000011100 000000 000001111110         0100000000  00000000  11223457


Q ss_pred             HHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC---cEEEcCeEEecCChHh
Q 048009          239 VSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG---AQVHSSIVLSNATPYK  295 (531)
Q Consensus       239 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g---~~~~ad~VV~aa~~~~  295 (531)
                      +.+.+.+.++++|++|++++.+++|...+ +.+ .|++.++   +++.+|.||+++|...
T Consensus       222 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~~~~~~~i~~D~vl~a~G~~p  279 (484)
T TIGR01438       222 CANKVGEHMEEHGVKFKRQFVPIKVEQIE-AKV-KVTFTDSTNGIEEEYDTVLLAIGRDA  279 (484)
T ss_pred             HHHHHHHHHHHcCCEEEeCceEEEEEEcC-CeE-EEEEecCCcceEEEeCEEEEEecCCc
Confidence            88888899999999999999999998765 443 3666555   3799999999988554

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.03  E-value=3.7e-09  Score=109.13  Aligned_cols=58  Identities=7%  Similarity=-0.014  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA---DGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++.|++|++++.++++..++ |+|+||...   +|+  .+.|+.||+|+|...
T Consensus       136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  198 (566)
T PRK06452        136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDN-KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG  198 (566)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC-CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence            4688888888888899999999999999887 999998764   333  578999999999876

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.02  E-value=2.9e-09  Score=110.21  Aligned_cols=59  Identities=12%  Similarity=0.084  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..|...|.+.+++.|++|++++.|+++..+++|+|.||..   .+|+  .+.|+.||+|+|...
T Consensus       143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  206 (588)
T PRK08958        143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG  206 (588)
T ss_pred             HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence            4688899888888999999999999999863389999875   3564  578999999999876

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.02  E-value=4.2e-09  Score=105.25  Aligned_cols=65  Identities=17%  Similarity=0.197  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPG  303 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~  303 (531)
                      ..+.+.|.+.+++.|++|+.+++|++|+.++ +.+. |++.+|+++.||.||.|.|.++...+++..
T Consensus       112 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v~-v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~  176 (405)
T PRK05714        112 RVVQDALLERLHDSDIGLLANARLEQMRRSG-DDWL-LTLADGRQLRAPLVVAADGANSAVRRLAGC  176 (405)
T ss_pred             HHHHHHHHHHHhcCCCEEEcCCEEEEEEEcC-CeEE-EEECCCCEEEeCEEEEecCCCchhHHhcCC
Confidence            3677778888888899999999999998876 5544 788899889999999999999877777643

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=99.02  E-value=8.2e-09  Score=100.73  Aligned_cols=64  Identities=19%  Similarity=0.380  Sum_probs=52.7

Q ss_pred             CCCccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEe
Q 048009          225 NPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLS  289 (531)
Q Consensus       225 ~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~  289 (531)
                      ..+.+-||..|.++|++++.+.+.-.|+...+|+.|++|..+++|++.+|.. +|+++.|++||.
T Consensus       220 G~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~  283 (438)
T PF00996_consen  220 GKSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIG  283 (438)
T ss_dssp             SSSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEE
T ss_pred             CCCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEE
Confidence            3446679999999999999999999999999999999999965588888876 788899999997

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.01  E-value=2.7e-09  Score=107.13  Aligned_cols=64  Identities=14%  Similarity=0.132  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCC-C--cEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLAD-G--AQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~-g--~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+.+.|.+.+.+. |++++++++|++|+.++ +.+. |++.+ +  .+++||.||.|.|.++.+.+.+.
T Consensus       121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~-~~~~-v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~  188 (415)
T PRK07364        121 QVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ-DAAT-VTLEIEGKQQTLQSKLVVAADGARSPIRQAAG  188 (415)
T ss_pred             HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC-CeeE-EEEccCCcceEEeeeEEEEeCCCCchhHHHhC
Confidence            35777787777765 79999999999998776 5443 66653 2  36899999999998887666553

>PLN02661 Putative thiazole synthesis

Probab=99.01  E-value=7.6e-09  Score=97.35  Aligned_cols=42  Identities=31%  Similarity=0.533  Sum_probs=37.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHc-CCcEEEEccCCCCCceee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARA-GLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~-G~~V~v~E~~~~~GG~~~   57 (531)
                      .++||+|||||++||+||+.|+++ |++|+|+|++..+||.+.
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~  133 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW  133 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee
Confidence            368999999999999999999986 899999999999988543

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.01  E-value=4.2e-09  Score=109.41  Aligned_cols=59  Identities=17%  Similarity=0.273  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++.|++|++++.|+++..+++|+|.||..   .+|+  .+.|+.||+|+|...
T Consensus       149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  212 (598)
T PRK09078        149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG  212 (598)
T ss_pred             HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence            4688999998999999999999999998865478999875   3564  678999999999876

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.01  E-value=2.3e-09  Score=108.18  Aligned_cols=56  Identities=21%  Similarity=0.376  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+...+.+.+++. |++++ ++.|++|..++ +++.+|.+.+|..+.|+.||+|+|.+.
T Consensus       101 ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~-grV~GV~t~dG~~I~Ak~VIlATGTFL  157 (618)
T PRK05192        101 LYRAAMREILENQPNLDLF-QGEVEDLIVEN-GRVVGVVTQDGLEFRAKAVVLTTGTFL  157 (618)
T ss_pred             HHHHHHHHHHHcCCCcEEE-EeEEEEEEecC-CEEEEEEECCCCEEECCEEEEeeCcch
Confidence            4566676777665 78874 66899998887 889999999999999999999999754

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=99.01  E-value=1.3e-07  Score=85.77  Aligned_cols=37  Identities=38%  Similarity=0.654  Sum_probs=33.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHc----CCcEEEEccCCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARA----GLSVAVLERRHVI   52 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~----G~~V~v~E~~~~~   52 (531)
                      .+.||+|||||..|++.|+.|.++    |++|+|+|+++..
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty  125 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY  125 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence            468999999999999999999875    7999999998864

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.01  E-value=9.4e-09  Score=92.34  Aligned_cols=40  Identities=38%  Similarity=0.588  Sum_probs=36.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      -.|||||+|++||+|+..+...|-.|+++|+...+||-+.
T Consensus        10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi   49 (477)
T KOG2404|consen   10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI   49 (477)
T ss_pred             CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence            3699999999999999999999878999999999999864

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.00  E-value=4.3e-09  Score=109.49  Aligned_cols=59  Identities=14%  Similarity=0.216  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA---DGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++.|++|+.++.++++..+++|++.||...   +|+  .+.|+.||+|+|...
T Consensus       187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g  250 (635)
T PLN00128        187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG  250 (635)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence            46888999888889999999999999887633889888763   464  678999999999876

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.00  E-value=7.9e-09  Score=107.13  Aligned_cols=59  Identities=20%  Similarity=0.356  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC-Cc--EEEc-CeEEecCChHhH
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD-GA--QVHS-SIVLSNATPYKT  296 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~-g~--~~~a-d~VV~aa~~~~~  296 (531)
                      ..+...|.+.++++|++|+++++|+++..++ +++++|...+ |+  .+.+ +.||+|+|....
T Consensus       221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~-g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~  283 (578)
T PRK12843        221 NALIGRLLYSLRARGVRILTQTDVESLETDH-GRVIGATVVQGGVRRRIRARGGVVLATGGFNR  283 (578)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-CEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence            4688999999999999999999999998776 8999988754 33  4676 679999998874

>TIGR00275 flavoprotein, HI0933 family

Probab=99.00  E-value=3.6e-09  Score=104.68  Aligned_cols=57  Identities=21%  Similarity=0.286  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.|.+.+++.|++|+++++|++|..++ +. ..|++ +++++.+|.||+|+|...
T Consensus       104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-~~-~~v~~-~~~~i~ad~VIlAtG~~s  160 (400)
T TIGR00275       104 AADVLDALLNELKELGVEILTNSKVKSIKKDD-NG-FGVET-SGGEYEADKVILATGGLS  160 (400)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-Ce-EEEEE-CCcEEEcCEEEECCCCcc
Confidence            46789999999999999999999999998765 44 44766 455799999999999765

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.99  E-value=2.1e-09  Score=102.77  Aligned_cols=55  Identities=24%  Similarity=0.474  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChH
Q 048009          238 SVSMAIGSAARE-AGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPY  294 (531)
Q Consensus       238 ~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~  294 (531)
                      .+...+.+.+++ .+++|. +.+|++|..++ +++.+|.+.+|+++.+|.||+|+|++
T Consensus        96 ~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~-~~v~GV~~~~g~~~~a~~vVlaTGtf  151 (392)
T PF01134_consen   96 KYSRAMREKLESHPNLTII-QGEVTDLIVEN-GKVKGVVTKDGEEIEADAVVLATGTF  151 (392)
T ss_dssp             HHHHHHHHHHHTSTTEEEE-ES-EEEEEECT-TEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred             HHHHHHHHHHhcCCCeEEE-EcccceEEecC-CeEEEEEeCCCCEEecCEEEEecccc
Confidence            455666677776 467775 67999999998 99999999999999999999999983

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.99  E-value=1.8e-08  Score=103.96  Aligned_cols=59  Identities=27%  Similarity=0.391  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC-CCc--EEEcC-eEEecCChHhH
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA-DGA--QVHSS-IVLSNATPYKT  296 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~--~~~ad-~VV~aa~~~~~  296 (531)
                      ..|...|.+.+++.|++|+++++|++|..++ |+|++|... +|+  .+.++ .||+|+|....
T Consensus       208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~-g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~  270 (557)
T PRK12844        208 AALIGRMLEAALAAGVPLWTNTPLTELIVED-GRVVGVVVVRDGREVLIRARRGVLLASGGFGH  270 (557)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence            4688899999999999999999999999887 899998774 453  46785 69999987763

>PLN02697 lycopene epsilon cyclase

Probab=98.99  E-value=3.6e-09  Score=106.91  Aligned_cols=57  Identities=11%  Similarity=0.102  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+.+.|.+.+.+.|+++ ++++|++|..++ +.+..+++.+|.++.|+.||.|.|++.
T Consensus       192 ~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~-~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        192 TLLHEELLRRCVESGVSY-LSSKVDRITEAS-DGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             HHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC-CcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            467788888888899998 678999998876 555445677888899999999999887

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.99  E-value=6.4e-09  Score=107.89  Aligned_cols=59  Identities=14%  Similarity=0.096  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA---DGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..|...|.+.+.+.|++++.++.|+++..+++|++.||...   +|+  .+.++.||+|+|...
T Consensus       148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  211 (591)
T PRK07057        148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG  211 (591)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence            46888998888899999999999999987643888888763   454  578999999999876

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.99  E-value=1.1e-08  Score=104.75  Aligned_cols=58  Identities=22%  Similarity=0.298  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeC-CCc--EEEcC-eEEecCChHh
Q 048009          237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLA-DGA--QVHSS-IVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~--~~~ad-~VV~aa~~~~  295 (531)
                      ..+...+.+.+.+. |++|+++++|++|..++ ++|++|... +|+  .+.|+ .||+|+|.+.
T Consensus       173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~-g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~  235 (513)
T PRK12837        173 RALIGRFLAALARFPNARLRLNTPLVELVVED-GRVVGAVVERGGERRRVRARRGVLLAAGGFE  235 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecC-CEEEEEEEEECCcEEEEEeCceEEEeCCCcc
Confidence            35677777766654 99999999999998876 899998764 343  57786 6999999875

>PRK07588 hypothetical protein; Provisional

Probab=98.98  E-value=4.9e-09  Score=104.25  Aligned_cols=61  Identities=15%  Similarity=0.163  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      .|.+.|.+.+. .|++|+++++|++|+.++ +.+. |++++|+++.+|.||.|.|.++...+.+
T Consensus       104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~~d~vIgADG~~S~vR~~~  164 (391)
T PRK07588        104 DLAAAIYTAID-GQVETIFDDSIATIDEHR-DGVR-VTFERGTPRDFDLVIGADGLHSHVRRLV  164 (391)
T ss_pred             HHHHHHHHhhh-cCeEEEeCCEEeEEEECC-CeEE-EEECCCCEEEeCEEEECCCCCccchhhc
Confidence            56666666553 479999999999999876 5554 8888999899999999999888766643

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.98  E-value=1.1e-08  Score=102.81  Aligned_cols=65  Identities=17%  Similarity=0.223  Sum_probs=53.0

Q ss_pred             cccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecC-CCceeEEEeCC-CcEEEcCeEEecCChHh
Q 048009          231 YVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMIND-SGRVNGVQLAD-GAQVHSSIVLSNATPYK  295 (531)
Q Consensus       231 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~g~~~~V~~~~-g~~~~ad~VV~aa~~~~  295 (531)
                      ++.++...+.+.|.+.+++.|++|+++++|++|..++ ++++++|...+ +.++.++.||+|+|...
T Consensus       117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~  183 (432)
T TIGR02485       117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLG  183 (432)
T ss_pred             eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcc
Confidence            4455667899999999999999999999999998762 37788877653 34789999999999653

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.98  E-value=2.3e-09  Score=111.07  Aligned_cols=58  Identities=24%  Similarity=0.351  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++.|++|++++.|+++..++ |++.||..   .+|+  .+.|+.||+|+|.+.
T Consensus       135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~  197 (575)
T PRK05945        135 HAILHELVNNLRRYGVTIYDEWYVMRLILED-NQAKGVVMYHIADGRLEVVRAKAVMFATGGYG  197 (575)
T ss_pred             HHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC-CEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence            4788899998999999999999999998876 88888764   3564  578999999999876

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.98  E-value=8.9e-09  Score=105.87  Aligned_cols=59  Identities=29%  Similarity=0.386  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC-------CC-cEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA-------DG-AQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~-------~g-~~~~ad~VV~aa~~~~  295 (531)
                      ..+.+.|.+.+++.|++|+.++.|++|..+++|++.+|.+.       ++ ..+.|+.||+|+|...
T Consensus       144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~  210 (541)
T PRK07804        144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG  210 (541)
T ss_pred             HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence            47889999999999999999999999988753688888763       22 2578999999999876

>PRK12839 hypothetical protein; Provisional

Probab=98.98  E-value=1.1e-08  Score=105.52  Aligned_cols=60  Identities=22%  Similarity=0.367  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CCc-EE-EcCeEEecCChHhH
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DGA-QV-HSSIVLSNATPYKT  296 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~-~~-~ad~VV~aa~~~~~  296 (531)
                      ..|+..|.+.+++.|++|++++.|++|..+++|+|++|...  +|+ .+ .++.||+|+|.+..
T Consensus       214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~  277 (572)
T PRK12839        214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN  277 (572)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence            46888899999999999999999999987644899998764  444 23 45789999998763

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.98  E-value=5.2e-09  Score=104.53  Aligned_cols=58  Identities=12%  Similarity=0.162  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCceeEEEe-CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAARE-AGAHIVTRAEVSQLMINDSGRVNGVQL-ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g~~~~V~~-~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+.+.|.+.+++ .|++|+++++|++|..++ +++.+|.. .+++  .+.|+.||+|+|...
T Consensus       128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~-~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~  189 (433)
T PRK06175        128 KKVEKILLKKVKKRKNITIIENCYLVDIIEND-NTCIGAICLKDNKQINIYSKVTILATGGIG  189 (433)
T ss_pred             HHHHHHHHHHHHhcCCCEEEECcEeeeeEecC-CEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence            4678888877775 499999999999998776 88888653 3454  589999999999754

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.97  E-value=3.5e-09  Score=105.03  Aligned_cols=64  Identities=16%  Similarity=0.262  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAARE-AGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+.+.|.+.+.+ .|++++.+++|++|..++ +.+. |++++|+++.||.||.|.|.+..+.+.+.
T Consensus       105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~-~~~~-v~~~~g~~~~ad~vV~AdG~~S~vr~~l~  169 (382)
T TIGR01984       105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQ-DYVR-VTLDNGQQLRAKLLIAADGANSKVRELLS  169 (382)
T ss_pred             HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC-CeEE-EEECCCCEEEeeEEEEecCCChHHHHHcC
Confidence            4788888888888 499999999999998776 5544 77888888999999999998876666653

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.97  E-value=1.6e-07  Score=89.10  Aligned_cols=57  Identities=25%  Similarity=0.322  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChH
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPY  294 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~  294 (531)
                      ..+++.+.+.+++.|++|+++|+|+.|...+ +.+.+|++++|+++.+|+||+|.|-.
T Consensus       173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~-~~~~~v~~~~g~~i~~~~vvlA~Grs  229 (486)
T COG2509         173 PKVVKNIREYLESLGGEIRFNTEVEDIEIED-NEVLGVKLTKGEEIEADYVVLAPGRS  229 (486)
T ss_pred             HHHHHHHHHHHHhcCcEEEeeeEEEEEEecC-CceEEEEccCCcEEecCEEEEccCcc
Confidence            4788999999999999999999999999988 77788999999999999999987743

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.97  E-value=1.4e-08  Score=105.59  Aligned_cols=58  Identities=19%  Similarity=0.247  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++.|++|++++.|++|..++ |++.+|..   .+|+  .+.|+.||+|+|...
T Consensus       129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~  191 (566)
T TIGR01812       129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDD-GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG  191 (566)
T ss_pred             HHHHHHHHHHHHHcCCEEEeccEEEEEEEeC-CEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence            3678888888888899999999999999876 88888765   3564  578999999999876

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK08013 oxidoreductase; Provisional

Probab=98.97  E-value=3e-09  Score=105.88  Aligned_cols=63  Identities=14%  Similarity=0.228  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      .|-+.|.+.+++. |++++++++|++|+.++ +.+ .|++.+|++++||.||-|-|.++...+.+.
T Consensus       112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~-~~v-~v~~~~g~~i~a~lvVgADG~~S~vR~~~~  175 (400)
T PRK08013        112 VIHYALWQKAQQSSDITLLAPAELQQVAWGE-NEA-FLTLKDGSMLTARLVVGADGANSWLRNKAD  175 (400)
T ss_pred             HHHHHHHHHHhcCCCcEEEcCCeeEEEEecC-CeE-EEEEcCCCEEEeeEEEEeCCCCcHHHHHcC
Confidence            5777777777775 79999999999998776 444 377889999999999999998887777663

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.96  E-value=7.6e-10  Score=112.38  Aligned_cols=49  Identities=37%  Similarity=0.618  Sum_probs=43.1

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPG   64 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g   64 (531)
                      |.+|||+|||||++|++||..|++.|++|+|+|+ +.+||.|....|.+.
T Consensus         1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~ps   49 (460)
T PRK06292          1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPS   49 (460)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeH
Confidence            3569999999999999999999999999999999 789999876655543

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.96  E-value=5e-10  Score=113.35  Aligned_cols=58  Identities=17%  Similarity=0.204  Sum_probs=47.7

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ...+...+.+.++++|++++++++|++|..++ +.+. |.+.+|+++.+|.||+++|...
T Consensus       217 d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~~~-v~~~~g~~l~~D~vl~a~G~~p  274 (466)
T PRK07845        217 DADAAEVLEEVFARRGMTVLKRSRAESVERTG-DGVV-VTLTDGRTVEGSHALMAVGSVP  274 (466)
T ss_pred             CHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeC-CEEE-EEECCCcEEEecEEEEeecCCc
Confidence            34677888889999999999999999998765 5443 7777888899999999888554

>PLN02463 lycopene beta cyclase

Probab=98.96  E-value=6.2e-09  Score=103.54  Aligned_cols=56  Identities=16%  Similarity=0.249  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+.+.|.+.+.+.|++++ +++|++|..++ +++ .|++++|+++.||.||.|.|...
T Consensus       114 ~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~-~~~-~V~~~dG~~i~A~lVI~AdG~~s  169 (447)
T PLN02463        114 KKLKSKMLERCIANGVQFH-QAKVKKVVHEE-SKS-LVVCDDGVKIQASLVLDATGFSR  169 (447)
T ss_pred             HHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC-CeE-EEEECCCCEEEcCEEEECcCCCc
Confidence            4677788888888999986 57999999876 554 58899998899999999998765

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.96  E-value=4.4e-09  Score=104.53  Aligned_cols=64  Identities=16%  Similarity=0.146  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+.+.|.+.+.+.++..+++++|+++..++ +.+. |++++|+++.+|.||.|.|.++.+.+.+.
T Consensus       111 ~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~-~~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~g  174 (388)
T PRK07494        111 WLLNRALEARVAELPNITRFGDEAESVRPRE-DEVT-VTLADGTTLSARLVVGADGRNSPVREAAG  174 (388)
T ss_pred             HHHHHHHHHHHhcCCCcEEECCeeEEEEEcC-CeEE-EEECCCCEEEEeEEEEecCCCchhHHhcC
Confidence            3677888888887765558899999998876 5554 88888988999999999998876655543

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.96  E-value=9.7e-09  Score=103.84  Aligned_cols=56  Identities=21%  Similarity=0.334  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+.+.|.+.+++.|++++.+ .|+.+..++ +++.+|.. +|+.+.++.||+|+|.+.
T Consensus       120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~-g~v~Gv~~-~g~~i~a~~VVLATGG~~  175 (466)
T PRK08401        120 KHIIKILYKHARELGVNFIRG-FAEELAIKN-GKAYGVFL-DGELLKFDATVIATGGFS  175 (466)
T ss_pred             HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC-CEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence            468889999999999999876 888888766 88888877 566799999999999887

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.95  E-value=5.8e-09  Score=103.76  Aligned_cols=63  Identities=16%  Similarity=0.251  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      .+-+.|.+.+++. |++++.+++|+++..++ +.+ .|++.+|++++||.||.|.|.++.+.+.+.
T Consensus       113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~  176 (391)
T PRK08020        113 VLQLALWQALEAHPNVTLRCPASLQALQRDD-DGW-ELTLADGEEIQAKLVIGADGANSQVRQMAG  176 (391)
T ss_pred             HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC-CeE-EEEECCCCEEEeCEEEEeCCCCchhHHHcC
Confidence            5667777777776 99999999999998776 544 478888888999999999999987766654

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.95  E-value=8.9e-10  Score=110.05  Aligned_cols=40  Identities=43%  Similarity=0.718  Sum_probs=34.2

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      ||||||||++|++||+.+++.|.+|+|+|+.+.+||...+
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~   40 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS   40 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence            8999999999999999999999999999999999998754

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.95  E-value=6.9e-09  Score=102.74  Aligned_cols=62  Identities=11%  Similarity=0.193  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009          238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      .|-..|.+.+.+. |++++.+++|++++.++ +.+. |++++|+++++|.||.|.|..+...+.+
T Consensus       111 ~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~-~~~~-v~~~~g~~~~~~lvIgADG~~S~vR~~~  173 (384)
T PRK08849        111 LIQLGLWQQFAQYPNLTLMCPEKLADLEFSA-EGNR-VTLESGAEIEAKWVIGADGANSQVRQLA  173 (384)
T ss_pred             HHHHHHHHHHHhCCCeEEECCCceeEEEEcC-CeEE-EEECCCCEEEeeEEEEecCCCchhHHhc
Confidence            3555566655554 69999999999999876 5544 8889999999999999999988766655

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.95  E-value=1e-09  Score=99.49  Aligned_cols=258  Identities=15%  Similarity=0.139  Sum_probs=138.6

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhcCcccccchhh
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKCGTRIGETWNE   94 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~gl~~~~~~~~   94 (531)
                      ..+||..|||||.+|+++|.+.++.|.+|.|+|..-.+||.|...+|.|....-.++... .......++|+..+    +
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~-~~~~da~~yG~~~~----~   92 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYS-EEMEDAKDYGFPIN----E   92 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhh-HHhhhhhhcCCccc----c
Confidence            458999999999999999999999999999999988999999998887764433322110 00011111133210    0


Q ss_pred             hccchhhhHHH-HHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhh---hhh-h-hHHHHHHHHHhcChhhHHHH
Q 048009           95 VVEAKSIIVYA-IFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKI---RNS-A-FWAHCLRRAISLGQKDLVEF  168 (531)
Q Consensus        95 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~-~~~~~~~~~~~~~~~~~~~~  168 (531)
                      . ..-++..+. .....+.++....+..+.....+.+.+.+.|.....-..   ++. . +..+.+..+.+-.+. .+.+
T Consensus        93 ~-~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~-~PnI  170 (478)
T KOG0405|consen   93 E-GSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPI-IPNI  170 (478)
T ss_pred             c-cCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccC-CCCC
Confidence            0 111222221 122345666666666676666777777777665443222   110 0 111111111111000 0000


Q ss_pred             HHHHhccHHHHhhcccCChhHHHH--HhhhhhhccCCCCCCCChHHHHHHHHhhcc---CCCCCccccccCchHHHHHHH
Q 048009          169 VDLLLSPASKVLNKWFETDVLKAT--LATDAVIGTMSSVHTPGSGYVLLHHVMGET---DGNPGIWSYVEGGMGSVSMAI  243 (531)
Q Consensus       169 ~~~~~~~~~~~l~~~~~~~~l~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~gG~~~l~~~l  243 (531)
                         ....+.-.-+.+|+-+.....  +.+.+|++-.         +..+...++..   .....  ...++-...+.+.+
T Consensus       171 ---pG~E~gidSDgff~Lee~Pkr~vvvGaGYIavE---------~Agi~~gLgsethlfiR~~--kvLR~FD~~i~~~v  236 (478)
T KOG0405|consen  171 ---PGAELGIDSDGFFDLEEQPKRVVVVGAGYIAVE---------FAGIFAGLGSETHLFIRQE--KVLRGFDEMISDLV  236 (478)
T ss_pred             ---CchhhccccccccchhhcCceEEEEccceEEEE---------hhhHHhhcCCeeEEEEecc--hhhcchhHHHHHHH
Confidence               000011011223433333222  1233444310         11111111100   00000  13455567788888


Q ss_pred             HHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChH
Q 048009          244 GSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPY  294 (531)
Q Consensus       244 ~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~  294 (531)
                      .+.++..|++++.++.++++....+|... +.+..|....+|.+++|+|-.
T Consensus       237 ~~~~~~~ginvh~~s~~~~v~K~~~g~~~-~i~~~~~i~~vd~llwAiGR~  286 (478)
T KOG0405|consen  237 TEHLEGRGINVHKNSSVTKVIKTDDGLEL-VITSHGTIEDVDTLLWAIGRK  286 (478)
T ss_pred             HHHhhhcceeecccccceeeeecCCCceE-EEEeccccccccEEEEEecCC
Confidence            89999999999999999999987645444 556667655699999998854

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.95  E-value=8.4e-09  Score=107.27  Aligned_cols=58  Identities=17%  Similarity=0.276  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.++++| ++|+.++.|++|..++ +++++|..   .+|+  .+.|+.||+|+|.+.
T Consensus       132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  195 (608)
T PRK06854        132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVDD-NRIAGAVGFSVRENKFYVFKAKAVIVATGGAA  195 (608)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC-CEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence            357777888887776 9999999999998776 88888753   3554  689999999999876

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.94  E-value=1.5e-08  Score=103.93  Aligned_cols=56  Identities=21%  Similarity=0.245  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ++.+.+.+.+++.|++++++++|++|..++ +. ..|++.+|+++.+|.||+|+|...
T Consensus       267 ~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~-~~-~~V~~~~g~~i~a~~vViAtG~~~  322 (517)
T PRK15317        267 KLAAALEEHVKEYDVDIMNLQRASKLEPAA-GL-IEVELANGAVLKAKTVILATGARW  322 (517)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEecC-Ce-EEEEECCCCEEEcCEEEECCCCCc
Confidence            566667777888899999999999998865 44 347788888899999999999754

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.94  E-value=1.8e-08  Score=97.52  Aligned_cols=57  Identities=26%  Similarity=0.409  Sum_probs=48.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHc----CCcEEEEccCCCCCceeeccc-ccCCeeecccchh
Q 048009           17 KWDALVIGGGHNGLTAAAYLARA----GLSVAVLERRHVIGGAAVTEE-LIPGFKFSRCSYL   73 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~----G~~V~v~E~~~~~GG~~~s~~-~~~g~~~d~g~~~   73 (531)
                      ..++=|||+|+|+|+||.+|-+.    |.+|+|+|+.+.+||.+-+.+ ...||..-.|...
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~   63 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMM   63 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCccc
Confidence            35788999999999999999986    688999999999999998766 4678888777654

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.94  E-value=1.4e-08  Score=104.16  Aligned_cols=56  Identities=11%  Similarity=0.167  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+.+.+.+.+++.|++++++++|++|..++ +. ..|++.+|+.+.+|+||+|+|...
T Consensus       268 ~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~-~~-~~v~~~~g~~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       268 QLAANLEEHIKQYPIDLMENQRAKKIETED-GL-IVVTLESGEVLKAKSVIVATGARW  323 (515)
T ss_pred             HHHHHHHHHHHHhCCeEEcCCEEEEEEecC-Ce-EEEEECCCCEEEeCEEEECCCCCc
Confidence            455666777778899999999999998765 44 347788888899999999999754

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.93  E-value=1.6e-08  Score=105.81  Aligned_cols=58  Identities=19%  Similarity=0.255  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA---DGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++.|++|+.++.|++|..++ |++.||...   +|+  .+.|+.||+|+|...
T Consensus       158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g  220 (657)
T PRK08626        158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHDG-KRCYGAVVRCLITGELRAYVAKATLIATGGYG  220 (657)
T ss_pred             HHHHHHHHHHHHhCCCEEEeeEEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            4677788888889999999999999999877 888887763   565  467999999999876

>PRK09126 hypothetical protein; Provisional

Probab=98.93  E-value=9.9e-09  Score=102.19  Aligned_cols=62  Identities=16%  Similarity=0.294  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHH-HcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009          238 SVSMAIGSAAR-EAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       238 ~l~~~l~~~~~-~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      .+.+.|.+.+. +.|++|+.+++|++++.++ +.+ .|++++|+++.||.||.|.|......+.+
T Consensus       111 ~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~-~~~-~v~~~~g~~~~a~~vI~AdG~~S~vr~~~  173 (392)
T PRK09126        111 LIRRAAYEAVSQQDGIELLTGTRVTAVRTDD-DGA-QVTLANGRRLTARLLVAADSRFSATRRQL  173 (392)
T ss_pred             HHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC-CeE-EEEEcCCCEEEeCEEEEeCCCCchhhHhc
Confidence            45555555553 4689999999999998766 544 48888898999999999999877655555

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.93  E-value=1.7e-08  Score=104.21  Aligned_cols=42  Identities=43%  Similarity=0.627  Sum_probs=39.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC--CCCceee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH--VIGGAAV   57 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~--~~GG~~~   57 (531)
                      .++||+|||+|.+||+||+.+++.|.+|+|+||.+  .+||.+.
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~   46 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF   46 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence            46899999999999999999999999999999999  7888764

>PRK08244 hypothetical protein; Provisional

Probab=98.93  E-value=1.1e-08  Score=104.86  Aligned_cols=63  Identities=22%  Similarity=0.225  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CC-cEEEcCeEEecCChHhHHhhcCC
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DG-AQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g-~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      .+-+.|.+.+++.|++|+.+++|++|..++ +.+. |++.  +| +++++|+||.|.|.++...+.+.
T Consensus       101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v~-v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lg  166 (493)
T PRK08244        101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDG-DGVE-VVVRGPDGLRTLTSSYVVGADGAGSIVRKQAG  166 (493)
T ss_pred             HHHHHHHHHHHHcCCeEEeCCEEEEEEEcC-CeEE-EEEEeCCccEEEEeCEEEECCCCChHHHHhcC
Confidence            456667777888899999999999998876 5443 4443  56 47999999999999887766653

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.92  E-value=6.1e-09  Score=103.58  Aligned_cols=63  Identities=16%  Similarity=0.132  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+.+.|.+.+++.| ++++ +++|++|..++ +.+ .|++.+|+++.||.||.|.|.+..+.+.+.
T Consensus       111 ~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~-~~~-~v~~~~g~~~~a~~vI~adG~~S~vr~~~~  174 (388)
T PRK07608        111 SLIERALWAALRFQPNLTWF-PARAQGLEVDP-DAA-TLTLADGQVLRADLVVGADGAHSWVRSQAG  174 (388)
T ss_pred             HHHHHHHHHHHHhCCCcEEE-cceeEEEEecC-CeE-EEEECCCCEEEeeEEEEeCCCCchHHHhcC
Confidence            467888888888888 8998 99999998766 554 488888888999999999998876666553

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.92  E-value=1.7e-08  Score=100.68  Aligned_cols=47  Identities=32%  Similarity=0.495  Sum_probs=42.3

Q ss_pred             ccCCCCcEEEECCChhHHHHHHHHHHcCCc-EEEEccCCCCCceeecc
Q 048009           13 LKEKKWDALVIGGGHNGLTAAAYLARAGLS-VAVLERRHVIGGAAVTE   59 (531)
Q Consensus        13 ~~~~~~dvvIIGaGiaGL~aA~~L~~~G~~-V~v~E~~~~~GG~~~s~   59 (531)
                      +.+.++||+|||||++||++|++|.++|.. ++||||++.+||....+
T Consensus         4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~   51 (443)
T COG2072           4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN   51 (443)
T ss_pred             CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc
Confidence            335689999999999999999999999988 99999999999986653

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.92  E-value=2.5e-08  Score=104.19  Aligned_cols=58  Identities=12%  Similarity=0.206  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHc--------C-----cEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREA--------G-----AHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~--------G-----~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++.        |     ++|+.++.|+++..++ |++.||..   .+|+  .+.|+.||+|+|...
T Consensus       138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~  213 (626)
T PRK07803        138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG-GRIAGAFGYWRESGRFVLFEAPAVVLATGGIG  213 (626)
T ss_pred             HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC-CEEEEEEEEECCCCeEEEEEcCeEEECCCccc
Confidence            46888888878776        7     9999999999999876 88888764   3554  578999999999765

>PRK06185 hypothetical protein; Provisional

Probab=98.91  E-value=6.6e-09  Score=104.00  Aligned_cols=64  Identities=22%  Similarity=0.298  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEe--CCCc-EEEcCeEEecCChHhHHhhcCC
Q 048009          238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQL--ADGA-QVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~--~~g~-~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      .+.+.|.+.+.+. |++++.+++|+++..++ +++.+|++  .+|+ ++.||.||.|.|.++.+.+.+.
T Consensus       109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~-~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~g  176 (407)
T PRK06185        109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEG-GRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAG  176 (407)
T ss_pred             HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC-CEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcC
Confidence            5667777777664 89999999999999877 77665554  4564 7999999999999886666653

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.91  E-value=1.7e-09  Score=112.07  Aligned_cols=52  Identities=31%  Similarity=0.476  Sum_probs=46.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccC-CCCCceeecccccCCeee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR-HVIGGAAVTEELIPGFKF   67 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~-~~~GG~~~s~~~~~g~~~   67 (531)
                      .+|||+|||+|.+|.+||..+++.|.+|+|+|+. ..+||.|-..+|.|...+
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l  167 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKAL  167 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHH
Confidence            3689999999999999999999999999999984 479999999888876443

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.91  E-value=9.2e-09  Score=102.58  Aligned_cols=62  Identities=16%  Similarity=0.277  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009          238 SVSMAIGSAARE-AGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       238 ~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      .+.+.|.+.+.+ .|++++++++|++|..++ +.+. |++.+|..+.+|.||.|.|.+..+.+.+
T Consensus       113 ~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~-~~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~  175 (395)
T PRK05732        113 DVGQRLFALLDKAPGVTLHCPARVANVERTQ-GSVR-VTLDDGETLTGRLLVAADGSHSALREAL  175 (395)
T ss_pred             HHHHHHHHHHhcCCCcEEEcCCEEEEEEEcC-CeEE-EEECCCCEEEeCEEEEecCCChhhHHhh
Confidence            455666666655 479999999999998766 5544 8888888899999999999887665554

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.90  E-value=1.7e-08  Score=103.60  Aligned_cols=59  Identities=15%  Similarity=0.269  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHc-CcEEEcCcceeEEEecC-CCceeEEEeC-CCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMIND-SGRVNGVQLA-DGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~-~g~~~~V~~~-~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++. |++|++++.|+++..++ +|++.||... +|.  .+.|+.||+|+|...
T Consensus       134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~  197 (553)
T PRK07395        134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGG  197 (553)
T ss_pred             HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCc
Confidence            46888888888754 89999999999998763 2788888664 454  378999999999864

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.90  E-value=1.1e-08  Score=102.23  Aligned_cols=63  Identities=8%  Similarity=0.205  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      .+-+.|.+.+.+. |++++++++|++|..++ +.+ .|++++|+++.||.||.|-|..+.+.+.+.
T Consensus       112 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~-~~~-~v~~~~g~~~~a~lvIgADG~~S~vR~~~~  175 (405)
T PRK08850        112 VIQLALLEQVQKQDNVTLLMPARCQSIAVGE-SEA-WLTLDNGQALTAKLVVGADGANSWLRRQMD  175 (405)
T ss_pred             HHHHHHHHHHhcCCCeEEEcCCeeEEEEeeC-CeE-EEEECCCCEEEeCEEEEeCCCCChhHHHcC
Confidence            4556677766664 79999999999998776 544 488889999999999999998876666653

>PRK08275 putative oxidoreductase; Provisional

Probab=98.89  E-value=2e-08  Score=103.80  Aligned_cols=59  Identities=17%  Similarity=0.236  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+.+.|.+.+++.|++|+.++.|++|..+++|++.||..   .+|+  .+.|+.||+|+|...
T Consensus       137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (554)
T PRK08275        137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG  200 (554)
T ss_pred             HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence            4678889898999999999999999999873388888864   3564  578999999999875

>PRK06753 hypothetical protein; Provisional

Probab=98.89  E-value=1.5e-08  Score=100.23  Aligned_cols=61  Identities=18%  Similarity=0.204  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      .|.+.|.+.+.  +.+|+++++|++|+.++ +++. |++++|+++.+|.||-|-|.++...+.+.
T Consensus        99 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~~~~vigadG~~S~vR~~~~  159 (373)
T PRK06753         99 TLIDIIKSYVK--EDAIFTGKEVTKIENET-DKVT-IHFADGESEAFDLCIGADGIHSKVRQSVN  159 (373)
T ss_pred             HHHHHHHHhCC--CceEEECCEEEEEEecC-CcEE-EEECCCCEEecCEEEECCCcchHHHHHhC
Confidence            56666665544  36899999999998766 6554 88889988999999999998887777654

>TIGR00551 nadB L-aspartate oxidase

Probab=98.89  E-value=2.1e-08  Score=102.06  Aligned_cols=58  Identities=21%  Similarity=0.247  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCceeEEEeCC-C--cEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAARE-AGAHIVTRAEVSQLMINDSGRVNGVQLAD-G--AQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g~~~~V~~~~-g--~~~~ad~VV~aa~~~~  295 (531)
                      ..+.+.|.+.+++ .|++|+.++.|++|..++ +++.+|.+.+ +  ..+.++.||+|+|.+.
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~-g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~  189 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIET-GRVVGVWVWNRETVETCHADAVVLATGGAG  189 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeeccC-CEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence            4688889988887 699999999999998876 8888877654 3  2689999999999887

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.89  E-value=1.1e-08  Score=101.68  Aligned_cols=57  Identities=11%  Similarity=0.098  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+.+.|.+.+.+.|++++ +++|+.+..++ +..+.|++.+|+++.|+.||.|+|.+.
T Consensus        85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADG-VALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             HHHHHHHHHHHHhcCcEEE-ccEEEEEEecC-CceeEEEeCCCCEEEeCEEEECCCCch
Confidence            4677888888888899886 66899988774 444558888888899999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK06126 hypothetical protein; Provisional

Probab=98.89  E-value=1.7e-08  Score=104.74  Aligned_cols=63  Identities=6%  Similarity=0.090  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHhHHhhcCC
Q 048009          238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      .+-..|.+.+++. |++|+++++|++|..++ +.+. +++   .+|+  ++.+|+||.|.|.++...+.+.
T Consensus       127 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~-~~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lg  195 (545)
T PRK06126        127 YLEPILLEHAAAQPGVTLRYGHRLTDFEQDA-DGVT-ATVEDLDGGESLTIRADYLVGCDGARSAVRRSLG  195 (545)
T ss_pred             HHHHHHHHHHHhCCCceEEeccEEEEEEECC-CeEE-EEEEECCCCcEEEEEEEEEEecCCcchHHHHhcC
Confidence            4566677777664 79999999999999877 5554 444   3464  6899999999999987777654

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.88  E-value=2.9e-08  Score=102.61  Aligned_cols=63  Identities=17%  Similarity=0.186  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeC--CC--cEEEcCeEEecCChHhHHhhcCC
Q 048009          238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLA--DG--AQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g--~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      .+-+.|.+.+.+. |++|+++++|++|+.++ +.+. |+++  +|  ++++||.||-|-|..+...+.+.
T Consensus       114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~-~~v~-v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg  181 (538)
T PRK06183        114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDD-DGVT-VTLTDADGQRETVRARYVVGCDGANSFVRRTLG  181 (538)
T ss_pred             HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC-CeEE-EEEEcCCCCEEEEEEEEEEecCCCchhHHHHcC
Confidence            4556666767664 89999999999999877 5544 5554  56  37899999999999988777664

>PRK07236 hypothetical protein; Provisional

Probab=98.88  E-value=3.7e-08  Score=97.64  Aligned_cols=60  Identities=13%  Similarity=0.158  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      .+.+.|.+.+  .+++|+++++|++|+.++ +.+. |++++|+++.+|.||.|-|.++...+.+
T Consensus       101 ~l~~~L~~~~--~~~~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~ad~vIgADG~~S~vR~~l  160 (386)
T PRK07236        101 VLYRALRAAF--PAERYHLGETLVGFEQDG-DRVT-ARFADGRRETADLLVGADGGRSTVRAQL  160 (386)
T ss_pred             HHHHHHHHhC--CCcEEEcCCEEEEEEecC-CeEE-EEECCCCEEEeCEEEECCCCCchHHHHh
Confidence            4555555433  246899999999999876 5554 8889999999999999988888666554

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.88  E-value=1.5e-08  Score=101.56  Aligned_cols=61  Identities=13%  Similarity=0.111  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      ..|.+.|.+.+.  .+.++++++|++|..++ +.+ .|++++|+++.+|.||.|.|.++...+.+
T Consensus       105 ~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~-~~~-~v~~~~g~~~~ad~vVgADG~~S~vR~~l  165 (414)
T TIGR03219       105 ADFLDALLKHLP--EGIASFGKRATQIEEQA-EEV-QVLFTDGTEYRCDLLIGADGIKSALRDYV  165 (414)
T ss_pred             HHHHHHHHHhCC--CceEEcCCEEEEEEecC-CcE-EEEEcCCCEEEeeEEEECCCccHHHHHHh
Confidence            357777776653  35688999999998876 554 48888998999999999999998776654

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.88  E-value=4.3e-08  Score=109.32  Aligned_cols=43  Identities=33%  Similarity=0.506  Sum_probs=39.9

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      +.++||+|||+|.|||+||+.+++.|.+|+|+||.+..||.+.
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~  449 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA  449 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence            4569999999999999999999999999999999999999764

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.87  E-value=9.3e-08  Score=92.75  Aligned_cols=63  Identities=11%  Similarity=0.150  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC--cEEEcCeEEecCChHhHHhhcC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG--AQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g--~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      ..+.++|.+.++++|++|+.+++|.++..++ +++++|.+.++  ..+.||+||+|+|.|.. ..|+
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~-~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S-~gL~  327 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEG-NRVTRIHTRNHRDIPLRADHFVLASGSFFS-NGLV  327 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEeeC-CeEEEEEecCCccceEECCEEEEccCCCcC-HHHH
Confidence            4789999999999999999999999999888 88888887776  37999999999999931 4554

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.87  E-value=1.8e-07  Score=92.06  Aligned_cols=57  Identities=18%  Similarity=0.212  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc--EEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~--~~~ad~VV~aa~~~~  295 (531)
                      .+.+.|.+.+++.|++|+++++|+++..++ +++..+...+|+  .+.+|.||+|+|...
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~~V~~v~~~~g~~~~i~AD~VVLAtGrf~  318 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG-GRVTAVWTRNHGDIPLRARHFVLATGSFF  318 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEeeCCceEEEECCEEEEeCCCcc
Confidence            799999999999999999999999999877 777666655554  589999999999654

>PLN02815 L-aspartate oxidase

Probab=98.87  E-value=4.2e-08  Score=101.18  Aligned_cols=59  Identities=14%  Similarity=0.192  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCC---ceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSG---RVNGVQLA---DGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g---~~~~V~~~---~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.++++ |++|+.++.++++..+++|   +|+||...   +|+  .+.|+.||+|+|...
T Consensus       155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g  222 (594)
T PLN02815        155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG  222 (594)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence            46888888888765 8999999999999875424   27888753   454  568999999999776

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.86  E-value=1.3e-09  Score=110.15  Aligned_cols=46  Identities=33%  Similarity=0.566  Sum_probs=41.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPG   64 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g   64 (531)
                      ++|+|||||.+|++||..|++.|.+|+|+|++ .+||.|....|.+.
T Consensus         1 ~~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~gciPs   46 (458)
T PRK06912          1 SKLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNEGCMPT   46 (458)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCCccccc
Confidence            38999999999999999999999999999996 58999987777664

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.85  E-value=4.6e-08  Score=100.98  Aligned_cols=59  Identities=10%  Similarity=0.160  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++.|++|++++.|+++..+++++++||..   .+|+  .+.|+.||+|+|...
T Consensus       134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~  197 (543)
T PRK06263        134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG  197 (543)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence            4688888888888999999999999998876234888764   3564  578999999999776

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.85  E-value=6.8e-09  Score=96.46  Aligned_cols=59  Identities=22%  Similarity=0.398  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC------C---------cEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD------G---------AQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~------g---------~~~~ad~VV~aa~~~~  295 (531)
                      .+++..|-+.+++.|++|..+-.+.+|..+.||.|.||.++|      |         -++.|+.-|+|-|-+-
T Consensus       183 ~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G  256 (621)
T KOG2415|consen  183 GQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHG  256 (621)
T ss_pred             HHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccc
Confidence            589999999999999999999999999998879999998875      2         2577888888766544

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.84  E-value=6.4e-09  Score=102.16  Aligned_cols=65  Identities=18%  Similarity=0.231  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeE-EEeC-CCc--EEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNG-VQLA-DGA--QVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~-V~~~-~g~--~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+-+.|.+.+++.|++|+.+++|+++..+. +.+.. +... +|+  +++||.||-|-|.++...+.+.
T Consensus       111 ~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~-~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~  179 (356)
T PF01494_consen  111 PELDRALREEAEERGVDIRFGTRVVSIEQDD-DGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLG  179 (356)
T ss_dssp             HHHHHHHHHHHHHHTEEEEESEEEEEEEEET-TEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred             HHHHHhhhhhhhhhhhhheeeeecccccccc-cccccccccccCCceeEEEEeeeecccCcccchhhhcc
Confidence            4688889999999999999999999998877 55442 2222 343  6899999999999987776654

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.84  E-value=4.8e-08  Score=101.41  Aligned_cols=59  Identities=14%  Similarity=0.116  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHcC----cEEEcCcceeEEEecCCCceeEEEeCC---Cc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAG----AHIVTRAEVSQLMINDSGRVNGVQLAD---GA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G----~~i~~~~~V~~I~~~~~g~~~~V~~~~---g~--~~~ad~VV~aa~~~~  295 (531)
                      ..|...|.+.+++.+    ++++.++.++++..+++|+|.||...+   |+  .+.|+.||+|+|...
T Consensus       133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  200 (589)
T PRK08641        133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPG  200 (589)
T ss_pred             HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence            367778877776554    789999999999875448999988743   43  478999999999876

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.84  E-value=4.8e-08  Score=97.29  Aligned_cols=64  Identities=13%  Similarity=0.163  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEe---CCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQL---ADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..|.+.|.+.+.+. |++++++++|+++..++ +.+. |++   .+++++.+|.||-|-|.++...+.++
T Consensus       107 ~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~-~~v~-v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~  174 (400)
T PRK06475        107 ADLQSALLDACRNNPGIEIKLGAEMTSQRQTG-NSIT-ATIIRTNSVETVSAAYLIACDGVWSMLRAKAG  174 (400)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECCEEEEEecCC-CceE-EEEEeCCCCcEEecCEEEECCCccHhHHhhcC
Confidence            46778888877664 79999999999998766 5543 444   34457899999999999987777653

>PRK05868 hypothetical protein; Validated

Probab=98.83  E-value=3.5e-08  Score=97.02  Aligned_cols=61  Identities=15%  Similarity=0.136  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      .|.+.|.+. ...|++++++++|++|+.++ +.+. |+++||++++||.||-|-|.++...+.+
T Consensus       106 ~L~~~l~~~-~~~~v~i~~~~~v~~i~~~~-~~v~-v~~~dg~~~~adlvIgADG~~S~vR~~~  166 (372)
T PRK05868        106 DLVELLYGA-TQPSVEYLFDDSISTLQDDG-DSVR-VTFERAAAREFDLVIGADGLHSNVRRLV  166 (372)
T ss_pred             HHHHHHHHh-ccCCcEEEeCCEEEEEEecC-CeEE-EEECCCCeEEeCEEEECCCCCchHHHHh
Confidence            455555443 34689999999999998765 5544 8889999999999999999998877765

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.83  E-value=7.4e-08  Score=100.12  Aligned_cols=58  Identities=16%  Similarity=0.151  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAARE-AGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+.+.|.+.+.+ .|++|+.++.|+++..++ +++.||..   .+|+  .+.|+.||+|+|...
T Consensus       137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (577)
T PRK06069        137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN-GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG  200 (577)
T ss_pred             HHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC-CEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence            4678888887766 689999999999998876 88888764   3564  578999999999875

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.82  E-value=5.4e-08  Score=100.93  Aligned_cols=64  Identities=16%  Similarity=0.195  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCcee-EEEeCCCc-EEEcCeEEecCChHhHHhhcCC
Q 048009          238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVN-GVQLADGA-QVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~-~V~~~~g~-~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      .+-+.|.+.+.+. |++|+++++|+++..++ +.+. .++..+|. ++.+|.||.|.|.+....+++.
T Consensus       126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~-~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg  192 (547)
T PRK08132        126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHD-DGVTLTVETPDGPYTLEADWVIACDGARSPLREMLG  192 (547)
T ss_pred             HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC-CEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcC
Confidence            4556666767665 68999999999999876 4443 23334554 6899999999998887777664

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.82  E-value=5e-08  Score=97.65  Aligned_cols=38  Identities=39%  Similarity=0.626  Sum_probs=34.8

Q ss_pred             ccCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           13 LKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        13 ~~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +...++||+|||||++|++||+.|+++|++|+|+|++.
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            44557999999999999999999999999999999975

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.82  E-value=2.7e-08  Score=103.35  Aligned_cols=58  Identities=19%  Similarity=0.264  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHH----cCcEEEcCcceeEEEecCCCceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAARE----AGAHIVTRAEVSQLMINDSGRVNGVQLA---DGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~----~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~  295 (531)
                      .+...|.+.+++    .|++|++++.|+++..+++|+|+||...   +|+  .+.|+.||+|+|...
T Consensus       130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g  196 (603)
T TIGR01811       130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYG  196 (603)
T ss_pred             HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence            455566555544    3899999999999988653689998864   454  578999999998765

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=4.4e-08  Score=91.90  Aligned_cols=54  Identities=19%  Similarity=0.241  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .|.+.+.+.++..|+++.. ..|.+++..+ + ...|++.+|+ ++|+.||+|+|...
T Consensus        62 ~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~-~-~F~v~t~~~~-~~ak~vIiAtG~~~  115 (305)
T COG0492          62 ELMEQMKEQAEKFGVEIVE-DEVEKVELEG-G-PFKVKTDKGT-YEAKAVIIATGAGA  115 (305)
T ss_pred             HHHHHHHHHHhhcCeEEEE-EEEEEEeecC-c-eEEEEECCCe-EEEeEEEECcCCcc
Confidence            6677777888888988877 6888888765 3 4458888888 99999999999776

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.81  E-value=4.5e-08  Score=96.94  Aligned_cols=66  Identities=18%  Similarity=0.147  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC-CCc--EEEcCeEEecCChHhHHhhcCCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA-DGA--QVHSSIVLSNATPYKTFMDLVPG  303 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~--~~~ad~VV~aa~~~~~~~~ll~~  303 (531)
                      ..+...|.+.+.+.|++++++++++++...++.. ..|++. ||+  ++++|.||-|-|.++...+.++.
T Consensus       103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~  171 (390)
T TIGR02360       103 TEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGFHGVSRASIPA  171 (390)
T ss_pred             HHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCCchhhHHhcCc
Confidence            3566777777888899999999988886533133 347775 775  68999999999998877776643

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.80  E-value=7.3e-09  Score=93.36  Aligned_cols=68  Identities=25%  Similarity=0.330  Sum_probs=56.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccc-cCCe-eecccchhhhcchhhhhhc
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL-IPGF-KFSRCSYLQSLLRPSLIKC   84 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~-~~g~-~~d~g~~~~~~~~~~~~~~   84 (531)
                      ++|++|||||++|+..|..|++.|++|+|+||++.+||-|.+..+ ..|. ..-.|+|+++-.+..+++.
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdy   70 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDY   70 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHH
Confidence            489999999999999999999999999999999999999998663 2563 4467888877666666554

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.80  E-value=5.6e-08  Score=100.71  Aligned_cols=58  Identities=14%  Similarity=0.185  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..|...|.+.+.+. |++++.++.|+++..++ |++.||..   .+|+  .+.|+.||+|+|...
T Consensus       133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~  196 (582)
T PRK09231        133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG  196 (582)
T ss_pred             HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC-CEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence            36777887777665 79999999999999876 88888654   4664  678999999999866

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.79  E-value=8.2e-08  Score=98.12  Aligned_cols=58  Identities=24%  Similarity=0.361  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCC-Cc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLAD-GA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~-g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+.+.|.+.+++. |++|+.++.|++|..++ |++++|.+.+ +.  .+.|+.||+|+|...
T Consensus       136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~  197 (513)
T PRK07512        136 AAIMRALIAAVRATPSITVLEGAEARRLLVDD-GAVAGVLAATAGGPVVLPARAVVLATGGIG  197 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECcChhheeecC-CEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence            47888898888775 89999999999998776 8888887753 32  588999999999865

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.79  E-value=6.3e-08  Score=100.04  Aligned_cols=41  Identities=37%  Similarity=0.714  Sum_probs=37.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      ..|||+|||||+|||+||..|+++|++|+|+|++ .+||.+.
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~   43 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQIT   43 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEE
Confidence            3599999999999999999999999999999995 6787764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.79  E-value=3.1e-08  Score=97.67  Aligned_cols=63  Identities=5%  Similarity=0.085  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..|-+.|.+.+++.+ ++++++++|++|..++ +.+. |.+.++ ++.||.||-|-|..+...+.+.
T Consensus       104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~-~~v~-v~~~~~-~~~adlvIgADG~~S~vR~~l~  167 (374)
T PRK06617        104 SDFKKILLSKITNNPLITLIDNNQYQEVISHN-DYSI-IKFDDK-QIKCNLLIICDGANSKVRSHYF  167 (374)
T ss_pred             HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC-CeEE-EEEcCC-EEeeCEEEEeCCCCchhHHhcC
Confidence            478888888888775 8999999999998876 5544 778777 7999999999999887776653

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.79  E-value=4.3e-08  Score=97.35  Aligned_cols=64  Identities=22%  Similarity=0.149  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe-CCCc--EEEcCeEEecCChHhHHhhcCC
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL-ADGA--QVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~-~~g~--~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      .+.+.|.+.+++.|++++++++|++|...+++. ..|++ .+|+  ++.||.||-|-|..+...+.++
T Consensus       104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~-~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~  170 (392)
T PRK08243        104 EVTRDLMAARLAAGGPIRFEASDVALHDFDSDR-PYVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIP  170 (392)
T ss_pred             HHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc-eEEEEEcCCeEEEEEeCEEEECCCCCCchhhhcC
Confidence            566677777778899999999999998623133 34666 4664  6899999999898887777664

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.78  E-value=8.2e-08  Score=98.07  Aligned_cols=57  Identities=19%  Similarity=0.222  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC--Cc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD--GA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~--g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+.+.|.+.++ .|++|+.++.|++|..++ +++.+|...+  |+  .+.|+.||+|+|.+.
T Consensus       130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~-g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~  190 (510)
T PRK08071        130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIEN-GRCIGVLTKDSEGKLKRYYADYVVLASGGCG  190 (510)
T ss_pred             HHHHHHHHHHHh-cCCEEEECeEhhheeecC-CEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence            357888887775 689999999999998776 8888887653  33  578999999999876

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.78  E-value=1.7e-07  Score=97.32  Aligned_cols=59  Identities=15%  Similarity=0.174  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCC---CceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDS---GRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~---g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++.|++|+.++.|++|..+++   |++.||..   .+|+  .+.|+.||+|+|...
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  206 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG  206 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence            46888899989999999999999999987642   68888865   3554  578999999999876

>PRK07846 mycothione reductase; Reviewed

Probab=98.78  E-value=7.1e-09  Score=104.32  Aligned_cols=48  Identities=25%  Similarity=0.441  Sum_probs=40.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeee
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKF   67 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~   67 (531)
                      +||++|||||.+|.+||..  +.|.+|+|+|+ +.+||.|-..+|.|...+
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~GCiPsK~l   48 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNVGCIPTKMF   48 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCcCcchhHHH
Confidence            4899999999999999876  45999999998 579999998888776443

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.77  E-value=7.4e-08  Score=99.58  Aligned_cols=58  Identities=17%  Similarity=0.154  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..|...|.+.+.+. |++++.++.|+++..++ |++.||..   .+|+  .+.|+.||+|+|...
T Consensus       132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  195 (580)
T TIGR01176       132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD-GRVCGLVAIEMAEGRLVTILADAVVLATGGAG  195 (580)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC-CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence            46888888877764 79999999999999876 88888764   3564  578999999999876

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.77  E-value=1.7e-08  Score=96.21  Aligned_cols=69  Identities=25%  Similarity=0.335  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHc-CcEEEcCcceeEEEec-CCCceeEEEeCC--Cc----EEEcCeEEecCChHhHHhhcCCCCCC
Q 048009          237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMIN-DSGRVNGVQLAD--GA----QVHSSIVLSNATPYKTFMDLVPGNIL  306 (531)
Q Consensus       237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~-~~g~~~~V~~~~--g~----~~~ad~VV~aa~~~~~~~~ll~~~~~  306 (531)
                      ......+...+.++ |.+|+++++|++|..+ +++++++|++.+  +.    ++.++.||+|||...+ .+||-.+.+
T Consensus       192 ~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~T-p~LLl~SGi  268 (296)
T PF00732_consen  192 SSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGT-PRLLLRSGI  268 (296)
T ss_dssp             BHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHH-HHHHHHTTE
T ss_pred             eehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCC-hhhhccccc
Confidence            34444444444455 8999999999999775 227888888863  33    4678999999999886 566544334

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.76  E-value=4.9e-08  Score=99.21  Aligned_cols=41  Identities=39%  Similarity=0.507  Sum_probs=35.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      .+|+|||||++||+||..|.+.|++|++|||++.+||..+.
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~   42 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY   42 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence            58999999999999999999999999999999999999754

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.76  E-value=1.3e-06  Score=84.33  Aligned_cols=57  Identities=21%  Similarity=0.306  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHH-cCcEEEcCcceeEEEecCCC-ceeEEEeCCC----cEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAARE-AGAHIVTRAEVSQLMINDSG-RVNGVQLADG----AQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g-~~~~V~~~~g----~~~~ad~VV~aa~~~~  295 (531)
                      .+...|.+.+++ .+++|+.++.+.+|..++ + .+.||.+.+.    ..+.++.||+|+|...
T Consensus       134 ~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~-~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g  196 (518)
T COG0029         134 EIMTALLKKVRNRPNITVLEGAEALDLIIED-GIGVAGVLVLNRNGELGTFRAKAVVLATGGLG  196 (518)
T ss_pred             HHHHHHHHHHhcCCCcEEEecchhhhhhhcC-CceEeEEEEecCCCeEEEEecCeEEEecCCCc
Confidence            688888888876 589999999999999988 6 4558877533    3678899999988654

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.74  E-value=1.5e-07  Score=93.31  Aligned_cols=63  Identities=14%  Similarity=0.192  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC------C--cEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD------G--AQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~------g--~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+-+.|.+.+.+.|++++.. .|++|..++ +.+ .|++.+      |  .++.||.||.|.|....+.+.+.
T Consensus        92 ~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~-~~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg  162 (388)
T TIGR02023        92 EVFDSYLRERAQKAGAELIHG-LFLKLERDR-DGV-TLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELG  162 (388)
T ss_pred             HHHHHHHHHHHHhCCCEEEee-EEEEEEEcC-CeE-EEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcC
Confidence            356777888888899999765 699998776 544 365543      2  36899999999998886666543

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK09897 hypothetical protein; Provisional

Probab=98.74  E-value=2.4e-07  Score=93.78  Aligned_cols=55  Identities=11%  Similarity=0.109  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHcC--cEEEcCcceeEEEecCCCceeEEEeCC-CcEEEcCeEEecCCh
Q 048009          237 GSVSMAIGSAAREAG--AHIVTRAEVSQLMINDSGRVNGVQLAD-GAQVHSSIVLSNATP  293 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G--~~i~~~~~V~~I~~~~~g~~~~V~~~~-g~~~~ad~VV~aa~~  293 (531)
                      +...+.+.+.+.+.|  ++++.+++|++|..++ +.+. |++.+ |..+.||+||+|+|.
T Consensus       107 ~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~-~g~~-V~t~~gg~~i~aD~VVLAtGh  164 (534)
T PRK09897        107 RDQFLRLVDQARQQKFAVAVYESCQVTDLQITN-AGVM-LATNQDLPSETFDLAVIATGH  164 (534)
T ss_pred             HHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC-CEEE-EEECCCCeEEEcCEEEECCCC
Confidence            345555666677777  7888899999998876 5543 77655 467899999999995

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.74  E-value=4.6e-07  Score=87.00  Aligned_cols=64  Identities=19%  Similarity=0.263  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeC-----CCcEEEcCeEEecCChHhHHhhcCCC
Q 048009          237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLA-----DGAQVHSSIVLSNATPYKTFMDLVPG  303 (531)
Q Consensus       237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~-----~g~~~~ad~VV~aa~~~~~~~~ll~~  303 (531)
                      +.|.+.|.+.+++. |++++++++|++|...++|.+ .|.+.     +..++.|+.|++.||..++  .|+..
T Consensus       181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W-~v~~~~~~~~~~~~v~a~FVfvGAGG~aL--~LLqk  250 (488)
T PF06039_consen  181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRW-EVKVKDLKTGEKREVRAKFVFVGAGGGAL--PLLQK  250 (488)
T ss_pred             HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCE-EEEEEecCCCCeEEEECCEEEECCchHhH--HHHHH
Confidence            58999999999888 999999999999999875654 36653     2347999999999998883  45543

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK07538 hypothetical protein; Provisional

Probab=98.74  E-value=1.8e-07  Score=93.63  Aligned_cols=63  Identities=17%  Similarity=0.159  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHH-cC-cEEEcCcceeEEEecCCCceeEEEeCCC-----cEEEcCeEEecCChHhHHhhcCC
Q 048009          238 SVSMAIGSAARE-AG-AHIVTRAEVSQLMINDSGRVNGVQLADG-----AQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       238 ~l~~~l~~~~~~-~G-~~i~~~~~V~~I~~~~~g~~~~V~~~~g-----~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      .|-+.|.+.+.+ .| .+|+++++|+++..++++ +. +.+.++     +++.||.||-|-|.++...+.+.
T Consensus       103 ~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~-~~-~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~  172 (413)
T PRK07538        103 ELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADV-TV-VFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLY  172 (413)
T ss_pred             HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc-eE-EEEeccCCCccceEEeeEEEECCCCCHHHhhhhc
Confidence            566777777655 46 469999999999877634 22 444332     37999999999999887776653

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=98.71  E-value=8.2e-06  Score=79.48  Aligned_cols=62  Identities=23%  Similarity=0.395  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..++..|.+.++++|++++.+++|++|..++ +++.+|.+.+| ++.||.||+|+|++.  ..|.+
T Consensus       137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~-~~~~~v~~~~g-~~~a~~vV~a~G~~~--~~l~~  198 (337)
T TIGR02352       137 RALLKALEKALEKLGVEIIEHTEVQHIEIRG-EKVTAIVTPSG-DVQADQVVLAAGAWA--GELLP  198 (337)
T ss_pred             HHHHHHHHHHHHHcCCEEEccceEEEEEeeC-CEEEEEEcCCC-EEECCEEEEcCChhh--hhccc
Confidence            6899999999999999999999999999877 77888888888 599999999999998  45543

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.69  E-value=1.1e-07  Score=95.67  Aligned_cols=66  Identities=12%  Similarity=0.201  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHcC---cEEEcCcceeEEEec-----CCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAG---AHIVTRAEVSQLMIN-----DSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G---~~i~~~~~V~~I~~~-----~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+.+.|.+.+++.+   ++++++++|++|+.+     +++..+.|++.+|++++||.||-|-|..+...+.+.
T Consensus       117 ~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~g  190 (437)
T TIGR01989       117 DNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAAN  190 (437)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcC
Confidence            356777777777775   899999999999752     112224588899999999999999999987777654

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.68  E-value=1.8e-07  Score=79.41  Aligned_cols=52  Identities=23%  Similarity=0.222  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHcCcEEE-cCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCCh
Q 048009          239 VSMAIGSAAREAGAHIV-TRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATP  293 (531)
Q Consensus       239 l~~~l~~~~~~~G~~i~-~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~  293 (531)
                      ..+.+.+.+ ..|++|. .+.+|++|...+ +.. .|.+.||..+.||+||+|+|.
T Consensus       103 ~~~~~~~~~-~~~i~v~~~~~~V~~i~~~~-~~~-~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  103 RFDRLLARL-PAGITVRHVRAEVVDIRRDD-DGY-RVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             HHHHHHHhh-cCCcEEEEEeeEEEEEEEcC-CcE-EEEECCCCEEEeCEEEECCCC
Confidence            333444444 4465543 467999999987 543 588899999999999999874

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.68  E-value=2e-07  Score=96.27  Aligned_cols=58  Identities=19%  Similarity=0.224  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCC--CceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDS--GRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~--g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      .+...+...+++.+++|+.++.|+++..+++  |+|+||..   .+|+  .+.|+.||+|+|.+.
T Consensus       127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  191 (614)
T TIGR02061       127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV  191 (614)
T ss_pred             hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence            4555566667777789999999999998642  68888875   3554  578999999999986

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.67  E-value=6.9e-08  Score=94.87  Aligned_cols=56  Identities=23%  Similarity=0.231  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+-+.+.+.+. .++.++++++|++|..++ +. ..|++++|+++.|+.||-|.|+..
T Consensus        87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~-~~-~~v~~~~g~~i~a~~VvDa~g~~~  142 (374)
T PF05834_consen   87 ADFYEFLLERAA-AGGVIRLNARVTSIEETG-DG-VLVVLADGRTIRARVVVDARGPSS  142 (374)
T ss_pred             HHHHHHHHHHhh-hCCeEEEccEEEEEEecC-ce-EEEEECCCCEEEeeEEEECCCccc
Confidence            467777888887 566788899999999887 43 348899999999999999877544

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PLN02985 squalene monooxygenase

Probab=98.67  E-value=2.7e-07  Score=93.98  Aligned_cols=63  Identities=13%  Similarity=0.205  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeC--CCc--EEEcCeEEecCChHhHHhhcCC
Q 048009          238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLA--DGA--QVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~--~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      .+.+.|.+.+.+. |++++.+ +|+++..++ +.+.+|++.  +|+  ++.||.||.|.|.++.+.+.+.
T Consensus       148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~-~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~  215 (514)
T PLN02985        148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEEK-GVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLN  215 (514)
T ss_pred             HHHHHHHHHHHhCCCeEEEee-eEEEEEEcC-CEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhc
Confidence            6778888877766 6888865 677777666 666677763  565  3568999999999987776654

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.65  E-value=3.7e-07  Score=67.69  Aligned_cols=34  Identities=38%  Similarity=0.612  Sum_probs=31.7

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      +|+|||||..|+-.|..|++.|.+|+|+|+++.+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence            5899999999999999999999999999998753

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK11445 putative oxidoreductase; Provisional

Probab=98.65  E-value=3.8e-07  Score=89.03  Aligned_cols=62  Identities=11%  Similarity=0.121  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe-CCCc--EEEcCeEEecCChHhHHhhcCC
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL-ADGA--QVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~-~~g~--~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      .+-+.|.+ ..+.|++++.++.|++|..++ +.+. |++ .+|+  ++.||.||.|.|..+.+.+.+.
T Consensus       100 ~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~-~~~~-v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l~  164 (351)
T PRK11445        100 KFDLWLKS-LIPASVEVYHNSLCRKIWRED-DGYH-VIFRADGWEQHITARYLVGADGANSMVRRHLY  164 (351)
T ss_pred             HHHHHHHH-HHhcCCEEEcCCEEEEEEEcC-CEEE-EEEecCCcEEEEEeCEEEECCCCCcHHhHHhc
Confidence            34444555 346789999999999998776 4443 554 5664  6899999999998876665543

>TIGR03452 mycothione_red mycothione reductase

Probab=98.65  E-value=2.9e-08  Score=100.02  Aligned_cols=48  Identities=25%  Similarity=0.453  Sum_probs=41.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeee
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKF   67 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~   67 (531)
                      +||++|||+|.+|..||..  +.|.+|+|+|+ ..+||.|-..+|.|...+
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~GCiPsK~l   49 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNVGCIPTKMF   49 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeeccCccchHHH
Confidence            5999999999999998654  46999999998 579999999888876443

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06996 hypothetical protein; Provisional

Probab=98.65  E-value=2.3e-07  Score=92.34  Aligned_cols=55  Identities=16%  Similarity=0.204  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC---cEEEcCeEEecCCh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG---AQVHSSIVLSNATP  293 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g---~~~~ad~VV~aa~~  293 (531)
                      ..+-+.|.+.+++.|++++++++|++++.++ +.+. |++.+|   +++.||.||-|-|.
T Consensus       115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~-~~v~-v~~~~~~g~~~i~a~lvIgADG~  172 (398)
T PRK06996        115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDA-DGVT-LALGTPQGARTLRARIAVQAEGG  172 (398)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeeeeecC-CeEE-EEECCCCcceEEeeeEEEECCCC
Confidence            4688889999999999999999999998766 4443 667654   57999999997674

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.64  E-value=2.9e-07  Score=94.78  Aligned_cols=59  Identities=17%  Similarity=0.250  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHc-CcEEEcCcceeEEEecC-----CCceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMIND-----SGRVNGVQLA---DGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~-----~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+.+. |++|+.++.|+++..++     ++++.||...   +|+  .+.++.||+|+|...
T Consensus       138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~  207 (536)
T PRK09077        138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS  207 (536)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence            36777788777765 89999999999988643     2788888763   454  578999999999876

>PRK10262 thioredoxin reductase; Provisional

Probab=98.61  E-value=4.9e-07  Score=87.20  Aligned_cols=42  Identities=36%  Similarity=0.512  Sum_probs=37.2

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      +..+||+|||||++||+||..|+++|++|+|+|+. ..||.+.
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~   45 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT   45 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCcee
Confidence            45799999999999999999999999999999964 6777654

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.59  E-value=9.9e-07  Score=89.21  Aligned_cols=38  Identities=32%  Similarity=0.356  Sum_probs=36.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCce
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGA   55 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~   55 (531)
                      +||+|||+|++|+++|+.|+++|++|+|+|+....||.
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~   38 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFL   38 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCC
Confidence            69999999999999999999999999999999998863

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=98.59  E-value=1.4e-07  Score=83.68  Aligned_cols=63  Identities=24%  Similarity=0.255  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCceeEEEeC---C-CcEEEcCeEEecCChHhHHhhcCCC
Q 048009          237 GSVSMAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQLA---D-GAQVHSSIVLSNATPYKTFMDLVPG  303 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~~~~V~~~---~-g~~~~ad~VV~aa~~~~~~~~ll~~  303 (531)
                      +.+...+.+.+++.| +++.++ +|.+|..+. +++.+|-.+   + +.....+++|+++|||.  .+|++.
T Consensus       147 ~lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk-~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWT--skllp~  214 (380)
T KOG2852|consen  147 YLFCHFILSEAEKRGGVKLVFG-KVKEVSDEK-HRINSVPKAEAEDTIIKADVHKIVVSAGPWT--SKLLPF  214 (380)
T ss_pred             HHHHHHHHHHHHhhcCeEEEEe-eeEEeeccc-ccccccchhhhcCceEEeeeeEEEEecCCCc--hhhccc
Confidence            467888888888877 899888 888997554 676666555   2 33556778999999999  677754

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.51  E-value=4.5e-07  Score=87.39  Aligned_cols=56  Identities=18%  Similarity=0.161  Sum_probs=48.4

Q ss_pred             CchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc-EEEcCeEEecCChHh
Q 048009          234 GGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA-QVHSSIVLSNATPYK  295 (531)
Q Consensus       234 gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~-~~~ad~VV~aa~~~~  295 (531)
                      ....++.+...+.++++|++|++++.|++|..++      |++++|+ ++.++.||+|+|...
T Consensus       206 ~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~------v~~~~g~~~I~~~tvvWaaGv~a  262 (405)
T COG1252         206 MFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG------VTLKDGEEEIPADTVVWAAGVRA  262 (405)
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc------EEEccCCeeEecCEEEEcCCCcC
Confidence            3346888899999999999999999999998764      8888887 499999999999765

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.50  E-value=2.4e-06  Score=77.62  Aligned_cols=57  Identities=12%  Similarity=0.188  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc--EEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~--~~~ad~VV~aa~~~~  295 (531)
                      .+-++|...+++.|+.+..+-+|.+....+ ++++.|.+.|..  .+.+|.+|+|+|...
T Consensus       259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~-~~v~~i~trn~~diP~~a~~~VLAsGsff  317 (421)
T COG3075         259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG-GRVTEIYTRNHADIPLRADFYVLASGSFF  317 (421)
T ss_pred             hHHHHHHHHHHHcCceEecCCceeeeeeeC-CeEEEEEecccccCCCChhHeeeeccccc
Confidence            678899999999999999999999999998 999999998865  467999999888766

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.49  E-value=1.2e-06  Score=95.67  Aligned_cols=36  Identities=47%  Similarity=0.643  Sum_probs=33.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      .++||+|||||.+||+||+.+++.|.+|+|+||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            468999999999999999999999999999999875

>TIGR01810 betA choline dehydrogenase

Probab=98.49  E-value=1.2e-06  Score=90.47  Aligned_cols=60  Identities=22%  Similarity=0.267  Sum_probs=44.4

Q ss_pred             HHHHHHHHH-HcCcEEEcCcceeEEEecCCCceeEEEeCCC-c---EEEcCeEEecCChHhHHhhcC
Q 048009          240 SMAIGSAAR-EAGAHIVTRAEVSQLMINDSGRVNGVQLADG-A---QVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       240 ~~~l~~~~~-~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g-~---~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      ...+...+. +.|.+|++++.|++|..++ +++++|++.++ .   .+.++.||+|+|...+ .+||
T Consensus       196 ~~~~l~~a~~r~nl~i~~~~~V~rI~~~~-~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~S-P~LL  260 (532)
T TIGR01810       196 ARAYLHPAMKRPNLEVQTRAFVTKINFEG-NRATGVEFKKGGRKEHTEANKEVILSAGAINS-PQLL  260 (532)
T ss_pred             HHHHhhhhccCCCeEEEeCCEEEEEEecC-CeEEEEEEEeCCcEEEEEEeeeEEEccCCCCC-HHHH
Confidence            333334343 5579999999999999987 89999988543 2   3578999999998664 4554

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.48  E-value=2e-06  Score=90.00  Aligned_cols=65  Identities=15%  Similarity=0.133  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHcCc--EEEcCcceeEEEecCCC-ceeEEEeC------CC--cEEEcCeEEecCChHhHHhhcCC
Q 048009          238 SVSMAIGSAAREAGA--HIVTRAEVSQLMINDSG-RVNGVQLA------DG--AQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~--~i~~~~~V~~I~~~~~g-~~~~V~~~------~g--~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      .+-+.|.+.+.+.|+  +++++++|++++.++++ ..+.|++.      +|  ++++||+||-|=|.++...+.+.
T Consensus       142 ~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lg  217 (634)
T PRK08294        142 RVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIG  217 (634)
T ss_pred             HHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcC
Confidence            466777777877774  77889999999876422 21235554      35  47999999999999988777764

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.46  E-value=2.8e-07  Score=88.87  Aligned_cols=58  Identities=24%  Similarity=0.549  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC---Cc--EEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD---GA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~---g~--~~~ad~VV~aa~~~~  295 (531)
                      .+.-.++--+..+|+.+.-..+|.++..++++++.|+++.|   |+  .+.|..||.|+||..
T Consensus       225 Rmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfs  287 (680)
T KOG0042|consen  225 RMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFS  287 (680)
T ss_pred             HHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCcc
Confidence            45666666677899999888999999988768888888765   55  578899999999987

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.42  E-value=1.7e-07  Score=89.25  Aligned_cols=44  Identities=41%  Similarity=0.561  Sum_probs=40.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTE   59 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~   59 (531)
                      -.-+++|||||++|++||..|++.|++|.|+||++.+||+....
T Consensus       123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~  166 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKL  166 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhh
Confidence            35789999999999999999999999999999999999997654

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.42  E-value=1.3e-06  Score=87.68  Aligned_cols=58  Identities=17%  Similarity=0.399  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+.+.|.+.++++|++++.+ .|++|..+++|.+.+|++++|++++||.||=|+|...
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s  211 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS  211 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred             HHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence            367888889999999999887 5888887765888899999999999999999888766

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.42  E-value=3.6e-07  Score=91.41  Aligned_cols=44  Identities=25%  Similarity=0.355  Sum_probs=39.9

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHH--cCCcEEEEccCCCCCceeec
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLAR--AGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~--~G~~V~v~E~~~~~GG~~~s   58 (531)
                      ....+|+|||||+|||+||..|++  .|++|+|||+.+.+||.++.
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~   69 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS   69 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence            345799999999999999999997  69999999999999998764

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.41  E-value=3.5e-06  Score=85.89  Aligned_cols=44  Identities=43%  Similarity=0.603  Sum_probs=39.7

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      ..++||+|||||.|||.||..+++.|.+|+|+||....+|.+..
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~   47 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA   47 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence            45799999999999999999999999999999999988866543

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=2.5e-05  Score=73.12  Aligned_cols=62  Identities=15%  Similarity=0.264  Sum_probs=50.8

Q ss_pred             ccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEec
Q 048009          228 IWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSN  290 (531)
Q Consensus       228 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~a  290 (531)
                      .+.||..|..+|++.+++...-.|++..+|.++.+|....+|++.+|+..++ +..+..||+.
T Consensus       223 ~ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~-v~~~k~vi~d  284 (440)
T KOG1439|consen  223 PYLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGE-VAKCKKVICD  284 (440)
T ss_pred             cceecccCcchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCCc-eeecceEEec
Confidence            3669999999999999998888999999999999999944388776665444 4677777773

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=98.39  E-value=2.5e-06  Score=84.53  Aligned_cols=60  Identities=15%  Similarity=0.087  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      ..++.+|.+.+++ |++|+++++|++|+.++ ++ +.|++.+|+.+.||+||+|+|+|.  ..+.
T Consensus       135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~-~~-~~v~t~~g~~~~a~~vV~a~G~~~--~~l~  194 (381)
T TIGR03197       135 PQLCRALLAHAGI-RLTLHFNTEITSLERDG-EG-WQLLDANGEVIAASVVVLANGAQA--GQLA  194 (381)
T ss_pred             HHHHHHHHhccCC-CcEEEeCCEEEEEEEcC-Ce-EEEEeCCCCEEEcCEEEEcCCccc--cccc
Confidence            5789999998888 99999999999999876 55 458888888789999999999997  4554

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.38  E-value=4.1e-07  Score=97.80  Aligned_cols=43  Identities=40%  Similarity=0.630  Sum_probs=40.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      ..+||+|||||+|||+||+.|+++|++|+|||+.+.+||.+..
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~  578 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN  578 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence            4589999999999999999999999999999999999999854

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.37  E-value=2.7e-06  Score=77.34  Aligned_cols=43  Identities=42%  Similarity=0.587  Sum_probs=37.4

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC--CCCceee
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH--VIGGAAV   57 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~--~~GG~~~   57 (531)
                      +..+||+|||+|++||.||.+|+.+|.+|+|+|...  .+||.+.
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAf   47 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF   47 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceee
Confidence            347999999999999999999999999999998864  4677654

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.37  E-value=4e-07  Score=89.64  Aligned_cols=44  Identities=43%  Similarity=0.507  Sum_probs=41.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTE   59 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~   59 (531)
                      ...+|+|||||.+||++|..|.+.|++|+||||.+.+||.....
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~   48 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT   48 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence            35899999999999999999999999999999999999997654

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.36  E-value=4.5e-07  Score=98.35  Aligned_cols=43  Identities=37%  Similarity=0.468  Sum_probs=40.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      ...+|+|||||+|||+||+.|+++||+|+|||+.+.+||.+..
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~y  347 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRY  347 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEc
Confidence            4689999999999999999999999999999999999999753

>PRK12831 putative oxidoreductase; Provisional

Probab=98.35  E-value=5.8e-07  Score=90.73  Aligned_cols=43  Identities=42%  Similarity=0.581  Sum_probs=40.2

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      ....||+|||||++||+||+.|+++|++|+|+|+.+.+||.+.
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  180 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV  180 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence            4568999999999999999999999999999999999999875

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.30  E-value=3.5e-06  Score=75.97  Aligned_cols=55  Identities=29%  Similarity=0.502  Sum_probs=43.4

Q ss_pred             cccccccccccCCCCcEEEECCChhHHHHHHHHHHc--CCcEEEEccCCCCCceeec
Q 048009            4 RSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus         4 ~~~~~~~~~~~~~~~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~~GG~~~s   58 (531)
                      |..++.+.+.....+|.||||||+.||+.|.+|.-+  +.+|.|+|+...++=..++
T Consensus        35 R~i~gg~~s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSg   91 (453)
T KOG2665|consen   35 RGISGGAESISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSG   91 (453)
T ss_pred             ccccCCccccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecc
Confidence            334444444555689999999999999999999877  8999999999887655444

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.29  E-value=7.4e-07  Score=88.38  Aligned_cols=39  Identities=36%  Similarity=0.503  Sum_probs=34.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCcee
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAA   56 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~   56 (531)
                      +||+|||||++|++||+.|+++|++|+|+|++...+..|
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~c   39 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPC   39 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCc
Confidence            699999999999999999999999999999987654333

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.28  E-value=1.5e-06  Score=84.68  Aligned_cols=45  Identities=36%  Similarity=0.496  Sum_probs=36.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeeccc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEE   60 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~   60 (531)
                      ..|||+|||||.||+-||+..++.|.+++|+=-+..-=|.+..+.
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNP   47 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNP   47 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeeccccc
Confidence            359999999999999999999999999988877654444554443

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.26  E-value=1.3e-06  Score=88.08  Aligned_cols=44  Identities=41%  Similarity=0.547  Sum_probs=40.4

Q ss_pred             cCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           14 KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        14 ~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      +...+||+|||||++||+||..|+++|++|+|+|+.+.+||.+.
T Consensus       130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~  173 (449)
T TIGR01316       130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT  173 (449)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence            34568999999999999999999999999999999999999764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.25  E-value=1.2e-06  Score=93.96  Aligned_cols=43  Identities=44%  Similarity=0.648  Sum_probs=40.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      ...+|+|||||+|||+||+.|+++|++|+|+|+.+.+||.+..
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~  580 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN  580 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence            4579999999999999999999999999999999999999764

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.24  E-value=6.4e-06  Score=83.42  Aligned_cols=35  Identities=31%  Similarity=0.590  Sum_probs=31.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHcC--CcEEEEccCCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAG--LSVAVLERRHVI   52 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G--~~V~v~E~~~~~   52 (531)
                      ++|+|||||++||+||..|++.+  .+|+|+|+++..
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~   37 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV   37 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence            37999999999999999999975  589999998764

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=98.24  E-value=1.3e-06  Score=80.63  Aligned_cols=58  Identities=28%  Similarity=0.430  Sum_probs=47.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHc----CCcEEEEccCCCCCceeeccc-ccCCeeecccchh
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARA----GLSVAVLERRHVIGGAAVTEE-LIPGFKFSRCSYL   73 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~----G~~V~v~E~~~~~GG~~~s~~-~~~g~~~d~g~~~   73 (531)
                      ....+-|||+|+|||++|..|-+.    |.++.|+|.-+..||..-..+ ...||....|...
T Consensus        21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGGRem   83 (587)
T COG4716          21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGGREM   83 (587)
T ss_pred             ccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCcHHH
Confidence            357799999999999999999885    688999999999999876544 4567777666543

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.23  E-value=5.6e-06  Score=82.31  Aligned_cols=44  Identities=14%  Similarity=0.197  Sum_probs=36.8

Q ss_pred             HHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          248 REAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       248 ~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+.|+++++++.|+.|..++ .   .|.+.+|+++.+|++|+|+|...
T Consensus        69 ~~~~i~~~~g~~V~~id~~~-~---~v~~~~g~~~~yd~LViATGs~~  112 (396)
T PRK09754         69 QENNVHLHSGVTIKTLGRDT-R---ELVLTNGESWHWDQLFIATGAAA  112 (396)
T ss_pred             HHCCCEEEcCCEEEEEECCC-C---EEEECCCCEEEcCEEEEccCCCC
Confidence            45789999999999998765 2   36778888899999999999765

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.23  E-value=1.9e-06  Score=84.87  Aligned_cols=43  Identities=21%  Similarity=0.245  Sum_probs=38.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHH-HcCCcEEEEccCCCCCceeec
Q 048009           16 KKWDALVIGGGHNGLTAAAYLA-RAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~-~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      ...+|+|||||+|||.||.+|+ +.|++|+|||+.+.+||.++.
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~   81 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY   81 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence            4578999999999999999765 679999999999999999874

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.21  E-value=1.4e-05  Score=79.39  Aligned_cols=50  Identities=14%  Similarity=0.279  Sum_probs=39.7

Q ss_pred             HHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          243 IGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       243 l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +.+.++++|++++++++|++|.. + +.+ .|++.+|+++.+|.||+++|...
T Consensus       192 l~~~l~~~GV~i~~~~~V~~i~~-~-~~~-~v~l~~g~~i~aD~Vv~a~G~~p  241 (396)
T PRK09754        192 LLQRHQQAGVRILLNNAIEHVVD-G-EKV-ELTLQSGETLQADVVIYGIGISA  241 (396)
T ss_pred             HHHHHHHCCCEEEeCCeeEEEEc-C-CEE-EEEECCCCEEECCEEEECCCCCh
Confidence            34456678999999999999976 3 333 47888999999999999988654

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.18  E-value=2e-06  Score=94.38  Aligned_cols=43  Identities=40%  Similarity=0.537  Sum_probs=39.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      ...+|+|||||++||+||+.|+++|++|+|||+.+.+||.++.
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~  471 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY  471 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence            4579999999999999999999999999999999999998653

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.17  E-value=2.1e-06  Score=80.97  Aligned_cols=39  Identities=38%  Similarity=0.581  Sum_probs=34.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCce
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGA   55 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~   55 (531)
                      +.+||||||||+||++|..|.++|++|+|+|++..+-|.
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~   40 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE   40 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence            578999999999999999999999999999998765433

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.17  E-value=2.6e-06  Score=85.38  Aligned_cols=53  Identities=19%  Similarity=0.196  Sum_probs=44.5

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChH
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPY  294 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~  294 (531)
                      ...+.+.+.+.++++|++++++++|++|..+      .|.++||+++.+|.||+++|..
T Consensus       227 ~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~------~v~~~~g~~i~~d~vi~~~G~~  279 (424)
T PTZ00318        227 DQALRKYGQRRLRRLGVDIRTKTAVKEVLDK------EVVLKDGEVIPTGLVVWSTGVG  279 (424)
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC------EEEECCCCEEEccEEEEccCCC
Confidence            3568888899999999999999999998632      2678899999999999987743

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.16  E-value=2.4e-06  Score=90.32  Aligned_cols=43  Identities=37%  Similarity=0.567  Sum_probs=39.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      ...+|+|||||++||+||..|++.|++|+|||+.+.+||....
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~  368 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF  368 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence            4579999999999999999999999999999999999998653

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.15  E-value=2.9e-06  Score=86.14  Aligned_cols=43  Identities=44%  Similarity=0.579  Sum_probs=39.7

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      ...++|+|||||++||+||..|+++|++|+|||+.+.+||...
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~  183 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR  183 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence            3458999999999999999999999999999999999999864

>PTZ00367 squalene epoxidase; Provisional

Probab=98.14  E-value=2.4e-06  Score=87.67  Aligned_cols=35  Identities=31%  Similarity=0.537  Sum_probs=33.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .++||+|||||++|+++|+.|+++|++|+|+|++.
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            46999999999999999999999999999999975

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.13  E-value=2.7e-05  Score=76.90  Aligned_cols=51  Identities=18%  Similarity=0.276  Sum_probs=40.9

Q ss_pred             HHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          243 IGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       243 l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +.+.+++.|++++++++|++|..++ +. ..|++.+|+++.+|.||+++|...
T Consensus       189 l~~~l~~~gV~i~~~~~v~~i~~~~-~~-~~v~~~~g~~i~~D~vI~a~G~~p  239 (377)
T PRK04965        189 LQHRLTEMGVHLLLKSQLQGLEKTD-SG-IRATLDSGRSIEVDAVIAAAGLRP  239 (377)
T ss_pred             HHHHHHhCCCEEEECCeEEEEEccC-CE-EEEEEcCCcEEECCEEEECcCCCc
Confidence            3445677899999999999998765 44 347888999999999999988544

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=6.9e-06  Score=78.28  Aligned_cols=41  Identities=41%  Similarity=0.639  Sum_probs=33.6

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccC-CCCCce
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR-HVIGGA   55 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~-~~~GG~   55 (531)
                      ...|||||||||.||.-||...++-|-+.+++-.+ +++|-.
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~m   67 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEM   67 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeeccccccccc
Confidence            45799999999999999999999999887776665 455543

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.10  E-value=3.8e-06  Score=90.35  Aligned_cols=42  Identities=40%  Similarity=0.552  Sum_probs=39.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      ...||+|||||+|||+||..|+++|++|+|||+.+.+||...
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            468999999999999999999999999999999999999864

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.09  E-value=3.8e-06  Score=81.48  Aligned_cols=37  Identities=38%  Similarity=0.384  Sum_probs=33.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG   53 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~G   53 (531)
                      +.||+|||||++|+.||+.|+++|++|+|+|+.+...
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~   38 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK   38 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence            3699999999999999999999999999999987643

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.09  E-value=4.7e-06  Score=84.48  Aligned_cols=43  Identities=42%  Similarity=0.562  Sum_probs=39.6

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      ....+|+|||||++||+||..|+++|++|+|+|+++.+||...
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~  180 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR  180 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence            3468999999999999999999999999999999999998764

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.09  E-value=3.2e-06  Score=87.33  Aligned_cols=59  Identities=14%  Similarity=0.264  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHcCc-EEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009          238 SVSMAIGSAAREAGA-HIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~-~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      .|.+.|.+.+   +. .++++++|++|+.++ +.+. |++.+|+++.+|.||.|-|.++...+.+
T Consensus       195 ~L~~~L~~al---g~~~i~~g~~V~~I~~~~-d~Vt-V~~~dG~ti~aDlVVGADG~~S~vR~~l  254 (668)
T PLN02927        195 TLQQILARAV---GEDVIRNESNVVDFEDSG-DKVT-VVLENGQRYEGDLLVGADGIWSKVRNNL  254 (668)
T ss_pred             HHHHHHHhhC---CCCEEEcCCEEEEEEEeC-CEEE-EEECCCCEEEcCEEEECCCCCcHHHHHh
Confidence            5666665433   33 477899999998876 6665 8889998899999999999998665544

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.08  E-value=4.7e-06  Score=87.75  Aligned_cols=43  Identities=42%  Similarity=0.603  Sum_probs=40.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      ...+|+|||||++||+||+.|++.|++|+|||+.+.+||....
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~  351 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF  351 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec
Confidence            4689999999999999999999999999999999999998753

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.08  E-value=4.8e-06  Score=87.76  Aligned_cols=42  Identities=36%  Similarity=0.552  Sum_probs=39.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      ...+|+|||||++||+||+.|++.|++|+|||+++.+||...
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR  233 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence            457999999999999999999999999999999999999875

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.08  E-value=4.1e-06  Score=83.06  Aligned_cols=42  Identities=43%  Similarity=0.544  Sum_probs=40.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      ..+|+|||||++||+||..|++.|++|+|+|+.+.+||++..
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y  164 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY  164 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence            489999999999999999999999999999999999999864

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.07  E-value=2.1e-05  Score=84.78  Aligned_cols=45  Identities=9%  Similarity=0.191  Sum_probs=37.2

Q ss_pred             HHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          247 AREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       247 ~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ++++|++++++++|++|..+.    ..|.+.+|+++.+|++|+|+|...
T Consensus        69 ~~~~gI~~~~g~~V~~Id~~~----~~V~~~~G~~i~yD~LVIATGs~p  113 (847)
T PRK14989         69 YEKHGIKVLVGERAITINRQE----KVIHSSAGRTVFYDKLIMATGSYP  113 (847)
T ss_pred             HHhCCCEEEcCCEEEEEeCCC----cEEEECCCcEEECCEEEECCCCCc
Confidence            456799999999999998754    236788888899999999999764

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.06  E-value=4.1e-06  Score=81.99  Aligned_cols=37  Identities=38%  Similarity=0.652  Sum_probs=34.3

Q ss_pred             cEEEECCChhHHHHHHHHHHc--CCcEEEEccCCCCCce
Q 048009           19 DALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIGGA   55 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~~GG~   55 (531)
                      ||+|||||++||++|+.|+++  |++|+|+|+.+.+||.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~   39 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN   39 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence            899999999999999999997  9999999999877763

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.05  E-value=5.8e-06  Score=83.65  Aligned_cols=43  Identities=42%  Similarity=0.586  Sum_probs=39.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      ...+|+|||||++||+||..|+++|++|+|+|+.+.+||....
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~  182 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF  182 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee
Confidence            4589999999999999999999999999999999999998753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=98.04  E-value=4.1e-06  Score=87.33  Aligned_cols=44  Identities=36%  Similarity=0.533  Sum_probs=40.8

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      ..-.+|+|||+|++||+||-.|-+.||.|+||||++++||...-
T Consensus      1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred             ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence            34589999999999999999999999999999999999999753

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.04  E-value=4.6e-05  Score=82.16  Aligned_cols=54  Identities=9%  Similarity=0.196  Sum_probs=43.1

Q ss_pred             HHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          242 AIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       242 ~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+.+.++++|++|++++.|++|..++++....|.+.||+++.+|.||+++|...
T Consensus       192 ~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rP  245 (847)
T PRK14989        192 QLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRP  245 (847)
T ss_pred             HHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCccc
Confidence            345667889999999999999986532445568889999999999999988543

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.04  E-value=6.3e-06  Score=87.40  Aligned_cols=38  Identities=26%  Similarity=0.522  Sum_probs=34.4

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ....+|+|||||+|||+||++|+++||+|+|+|+.+..
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~  418 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKIT  418 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccc
Confidence            45689999999999999999999999999999997543

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.03  E-value=6.6e-06  Score=90.80  Aligned_cols=43  Identities=37%  Similarity=0.592  Sum_probs=40.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      ..+||+|||||++||+||..|++.|++|+|+|+++.+||.+..
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~  204 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS  204 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence            3589999999999999999999999999999999999998754

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.02  E-value=5.6e-06  Score=80.92  Aligned_cols=37  Identities=41%  Similarity=0.383  Sum_probs=34.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG   54 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG   54 (531)
                      .||+|||||++|+.||+.|+++|++|+|||+++..+-
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~   37 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT   37 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence            4899999999999999999999999999999887654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=98.02  E-value=7.3e-05  Score=77.06  Aligned_cols=62  Identities=27%  Similarity=0.395  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC---CCc--EEEcCeEEecCChHhHHhhcC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA---DGA--QVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      ..++.++++.+.++|++|+.+++|++|..++ +++++|++.   +|+  ++.|+.||+|+|+|.  .++.
T Consensus       128 ~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa--~~l~  194 (516)
T TIGR03377       128 FRLVAANVLDAQEHGARIFTYTKVTGLIREG-GRVTGVKVEDHKTGEEERIEAQVVINAAGIWA--GRIA  194 (516)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCEEEECCCcch--HHHH
Confidence            4788899999999999999999999999877 777777764   342  689999999999997  4443

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.01  E-value=2.2e-05  Score=84.50  Aligned_cols=45  Identities=16%  Similarity=0.185  Sum_probs=37.9

Q ss_pred             HHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          247 AREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       247 ~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ++++|++++++++|++|..+. .   .|++.+|+++.+|++|+|+|...
T Consensus        64 ~~~~gv~~~~g~~V~~Id~~~-k---~V~~~~g~~~~yD~LVlATGs~p  108 (785)
T TIGR02374        64 YEKHGITLYTGETVIQIDTDQ-K---QVITDAGRTLSYDKLILATGSYP  108 (785)
T ss_pred             HHHCCCEEEcCCeEEEEECCC-C---EEEECCCcEeeCCEEEECCCCCc
Confidence            457899999999999998765 2   37788898899999999999654

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.00  E-value=2.4e-05  Score=77.06  Aligned_cols=46  Identities=22%  Similarity=0.248  Sum_probs=36.8

Q ss_pred             HHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          245 SAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       245 ~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +.+++.|++++.+ +|++|+.++ .   .|.+.+|+++.+|++|+|+|...
T Consensus        62 ~~~~~~gv~~~~~-~v~~id~~~-~---~V~~~~g~~~~yD~LviAtG~~~  107 (364)
T TIGR03169        62 RLARQAGARFVIA-EATGIDPDR-R---KVLLANRPPLSYDVLSLDVGSTT  107 (364)
T ss_pred             HHHHhcCCEEEEE-EEEEEeccc-C---EEEECCCCcccccEEEEccCCCC
Confidence            3455678998875 899998865 3   37788998899999999999765

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.99  E-value=1e-05  Score=79.10  Aligned_cols=51  Identities=31%  Similarity=0.444  Sum_probs=42.7

Q ss_pred             cccccccccCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009            6 FTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus         6 ~~~~~~~~~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      +++.. +.+....+|+|||||.+|+++|..|+++|++|+|+|+.+.+||...
T Consensus         8 ~~~~~-~~~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   58 (352)
T PRK12770          8 FMCKE-KPPPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML   58 (352)
T ss_pred             hhccc-CCCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence            44443 3333457999999999999999999999999999999999998764

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.96  E-value=7.4e-05  Score=80.55  Aligned_cols=50  Identities=8%  Similarity=0.269  Sum_probs=41.3

Q ss_pred             HHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChH
Q 048009          243 IGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPY  294 (531)
Q Consensus       243 l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~  294 (531)
                      +.+.++++|++|++++.|++|..+  +++.+|++.||+++.+|.||+++|..
T Consensus       188 l~~~l~~~GV~v~~~~~v~~i~~~--~~~~~v~~~dG~~i~~D~Vi~a~G~~  237 (785)
T TIGR02374       188 LQRELEQKGLTFLLEKDTVEIVGA--TKADRIRFKDGSSLEADLIVMAAGIR  237 (785)
T ss_pred             HHHHHHHcCCEEEeCCceEEEEcC--CceEEEEECCCCEEEcCEEEECCCCC
Confidence            445567889999999999999753  45667889999999999999998854

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.95  E-value=1.2e-05  Score=81.88  Aligned_cols=42  Identities=40%  Similarity=0.575  Sum_probs=39.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      ...+|+|||||++||+||..|+++|++|+|+|+.+.+||.+.
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~  183 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM  183 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            347999999999999999999999999999999999999875

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=97.95  E-value=9e-06  Score=75.52  Aligned_cols=35  Identities=34%  Similarity=0.520  Sum_probs=33.2

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      +...||+|||||++|.+.|+.|+|.|.+|+|+||.
T Consensus        43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            45799999999999999999999999999999996

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.94  E-value=7.2e-05  Score=75.12  Aligned_cols=39  Identities=36%  Similarity=0.556  Sum_probs=35.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCce
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGA   55 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~   55 (531)
                      ..+++|||+|..||.+|..|+++|++|+|+|+.++++|.
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~  174 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ  174 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh
Confidence            479999999999999999999999999999998876544

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.89  E-value=1.4e-05  Score=71.43  Aligned_cols=33  Identities=45%  Similarity=0.725  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ||+|||||++|++||..|++.|++|+|+|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            799999999999999999999999999988653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.87  E-value=0.00019  Score=69.67  Aligned_cols=41  Identities=27%  Similarity=0.464  Sum_probs=34.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHc--C-CcEEEEccCCCCCceee
Q 048009           17 KWDALVIGGGHNGLTAAAYLARA--G-LSVAVLERRHVIGGAAV   57 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~--G-~~V~v~E~~~~~GG~~~   57 (531)
                      +++|+|||+|.+|+..|.+|.+.  . ..|.|||+.+..|+-+.
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gia   44 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIA   44 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCcc
Confidence            47999999999999999999986  2 22999999999886543

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.85  E-value=0.00012  Score=73.90  Aligned_cols=34  Identities=29%  Similarity=0.371  Sum_probs=31.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      .+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~  182 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDK  182 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            5899999999999999999999999999998654

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=0.00045  Score=64.25  Aligned_cols=63  Identities=13%  Similarity=0.232  Sum_probs=48.9

Q ss_pred             CCCccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEec
Q 048009          225 NPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSN  290 (531)
Q Consensus       225 ~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~a  290 (531)
                      ....+.||+-|..+|++.+.+...-.|+++.+|+.+.+|.... . |.+|.. ++.+..|.+||..
T Consensus       217 g~~pyLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~tk-~-v~~v~~-~~~~~ka~KiI~~  279 (434)
T COG5044         217 GKSPYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINETK-D-VETVDK-GSLTQKAGKIISS  279 (434)
T ss_pred             CCCcceeeccCchhhhHHHHHhhhccCceeecCcchhhhcccc-c-eeeeec-CcceeecCcccCC
Confidence            3445568999999999999998888899999999999998866 3 323322 3446889998883

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.82  E-value=0.00017  Score=71.22  Aligned_cols=44  Identities=11%  Similarity=0.074  Sum_probs=34.8

Q ss_pred             HHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          247 AREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       247 ~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +++.|++++++++|++|..++ .   .|.+ +++++.+|+||+|+|...
T Consensus        68 ~~~~gv~~~~~~~V~~id~~~-~---~v~~-~~~~~~yd~LVlATG~~~  111 (377)
T PRK04965         68 AEQFNLRLFPHTWVTDIDAEA-Q---VVKS-QGNQWQYDKLVLATGASA  111 (377)
T ss_pred             HHhCCCEEECCCEEEEEECCC-C---EEEE-CCeEEeCCEEEECCCCCC
Confidence            456799999999999998765 3   2444 566799999999999754

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.81  E-value=0.0002  Score=72.05  Aligned_cols=49  Identities=12%  Similarity=0.163  Sum_probs=38.0

Q ss_pred             HHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          243 IGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       243 l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +.+.+++.|++++++++|++|..+  +.+  +.+.+|+++.+|.||+++|...
T Consensus       185 ~~~~l~~~gV~v~~~~~v~~i~~~--~~~--v~~~~g~~i~~D~vi~a~G~~p  233 (427)
T TIGR03385       185 VEEELKKHEINLRLNEEVDSIEGE--ERV--KVFTSGGVYQADMVILATGIKP  233 (427)
T ss_pred             HHHHHHHcCCEEEeCCEEEEEecC--CCE--EEEcCCCEEEeCEEEECCCccC
Confidence            344566789999999999999754  333  5667888899999999888653

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.81  E-value=3e-05  Score=80.72  Aligned_cols=42  Identities=38%  Similarity=0.529  Sum_probs=39.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      ...+|+|||||++||++|+.|++.|++|+|+|+.+.+||...
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~  177 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR  177 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            457899999999999999999999999999999999999865

>PRK02106 choline dehydrogenase; Validated

Probab=97.77  E-value=2.7e-05  Score=81.01  Aligned_cols=51  Identities=22%  Similarity=0.293  Sum_probs=41.0

Q ss_pred             HcCcEEEcCcceeEEEecCCCceeEEEeCCC--c--EEEcCeEEecCChHhHHhhcC
Q 048009          249 EAGAHIVTRAEVSQLMINDSGRVNGVQLADG--A--QVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       249 ~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g--~--~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      ..+.+|++++.|++|..++ +++++|++.+.  .  .+.++.||+|+|...+ .+||
T Consensus       213 ~~nl~i~~~a~V~rI~~~~-~~a~GV~~~~~~~~~~~~~ak~VILaaGai~T-P~LL  267 (560)
T PRK02106        213 RPNLTIVTHALTDRILFEG-KRAVGVEYERGGGRETARARREVILSAGAINS-PQLL  267 (560)
T ss_pred             CCCcEEEcCCEEEEEEEeC-CeEEEEEEEeCCcEEEEEeeeeEEEccCCCCC-HHHH
Confidence            4569999999999999987 88999998543  2  4578999999998875 4544

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.74  E-value=2.8e-05  Score=83.59  Aligned_cols=34  Identities=32%  Similarity=0.433  Sum_probs=32.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHc--CCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~   51 (531)
                      ++|+|||||++||+||+.|+++  |++|+|+|+++.
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            4899999999999999999998  899999999875

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.74  E-value=0.00034  Score=70.89  Aligned_cols=51  Identities=20%  Similarity=0.308  Sum_probs=38.3

Q ss_pred             HHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          242 AIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       242 ~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+.+.+++.|++++++++|++|.. + +++..+.++++ ++.+|.||+++|...
T Consensus       196 ~l~~~l~~~gI~v~~~~~v~~i~~-~-~~~~~v~~~~~-~i~~d~vi~a~G~~p  246 (444)
T PRK09564        196 VMEEELRENGVELHLNEFVKSLIG-E-DKVEGVVTDKG-EYEADVVIVATGVKP  246 (444)
T ss_pred             HHHHHHHHCCCEEEcCCEEEEEec-C-CcEEEEEeCCC-EEEcCEEEECcCCCc
Confidence            345556788999999999999964 3 45555666555 699999999988653

>PRK13984 putative oxidoreductase; Provisional

Probab=97.73  E-value=4.4e-05  Score=80.33  Aligned_cols=43  Identities=35%  Similarity=0.515  Sum_probs=39.6

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      ....+|+|||+|.+|++||..|+++|++|+|+|+.+.+||...
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~  323 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR  323 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence            3568899999999999999999999999999999999998764

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=0.00035  Score=60.19  Aligned_cols=57  Identities=16%  Similarity=0.203  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhc
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDL  300 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~l  300 (531)
                      .|.+.|.++.++.|.+|..+ .|.++..+. .-.+ |.+ |.+.+.+|.||+|+|...  .+|
T Consensus        71 ~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss-kpF~-l~t-d~~~v~~~avI~atGAsA--kRl  127 (322)
T KOG0404|consen   71 ELMDKMRKQSERFGTEIITE-TVSKVDLSS-KPFK-LWT-DARPVTADAVILATGASA--KRL  127 (322)
T ss_pred             HHHHHHHHHHHhhcceeeee-ehhhccccC-CCeE-EEe-cCCceeeeeEEEecccce--eee
Confidence            67888999999999999887 789998875 3333 545 445699999999999877  555

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.56  E-value=0.00011  Score=68.50  Aligned_cols=45  Identities=20%  Similarity=0.248  Sum_probs=40.1

Q ss_pred             cCCCCcEEEECCChhHHHHHHHHHHc--CCcEEEEccCCCCCceeec
Q 048009           14 KEKKWDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        14 ~~~~~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~~GG~~~s   58 (531)
                      ++.+++|.|||+|+||+.+|..|.++  +.+|.|+|+.+.+.|..+.
T Consensus        17 qs~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy   63 (468)
T KOG1800|consen   17 QSSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY   63 (468)
T ss_pred             ccCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence            34567999999999999999999985  6899999999999999764

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.53  E-value=2.2e-05  Score=66.70  Aligned_cols=41  Identities=37%  Similarity=0.596  Sum_probs=36.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHc--CCcEEEEccCCCCCceee
Q 048009           17 KWDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~~GG~~~   57 (531)
                      ..||+|||+|.+||+|||..+++  ..+|.|+|.+-.+||-++
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW  118 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW  118 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence            47999999999999999999965  589999999999998764

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.51  E-value=0.00079  Score=65.11  Aligned_cols=58  Identities=22%  Similarity=0.252  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+.+.+...++++|+++++++.+.++..+.+|++..|.+.||+++.||.||+.+|...
T Consensus       256 ~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p  313 (478)
T KOG1336|consen  256 SIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKP  313 (478)
T ss_pred             HHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence            3444456678899999999999999998777899999999999999999999888665

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.49  E-value=0.0013  Score=63.77  Aligned_cols=61  Identities=16%  Similarity=0.127  Sum_probs=48.6

Q ss_pred             cc-cCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC-cEEEcCeEEecCChHh
Q 048009          231 YV-EGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG-AQVHSSIVLSNATPYK  295 (531)
Q Consensus       231 ~~-~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g-~~~~ad~VV~aa~~~~  295 (531)
                      || ..-...+.++|...+++.|++|+++++|++|  ++ ++ ..|.+.++ ..+.||+||+|+|...
T Consensus        79 fP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~-~~-~~v~~~~~~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        79 FPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG-GT-LRFETPDGQSTIEADAVVLALGGAS  141 (376)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC-Cc-EEEEECCCceEEecCEEEEcCCCcc
Confidence            55 4456789999999999999999999999999  33 33 45776543 4699999999999754

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.46  E-value=0.00054  Score=66.05  Aligned_cols=35  Identities=40%  Similarity=0.482  Sum_probs=27.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcC-CcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAG-LSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G-~~V~v~E~~~~   51 (531)
                      .+|+++||.|+++|+.|..|.+.+ .+++.||+.+.
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~   37 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS   37 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence            489999999999999999999986 99999999774

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=0.00018  Score=65.88  Aligned_cols=68  Identities=16%  Similarity=0.169  Sum_probs=50.9

Q ss_pred             ccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC---Cc--EEEcCeEEecCChHhHHhhc
Q 048009          232 VEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD---GA--QVHSSIVLSNATPYKTFMDL  300 (531)
Q Consensus       232 ~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~---g~--~~~ad~VV~aa~~~~~~~~l  300 (531)
                      .+|-.+++++.+.+.++++|+++.-.+..++|+..++|+. .|...+   ++  +-.+|.|++|+|-.....+|
T Consensus       233 LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l  305 (503)
T KOG4716|consen  233 LRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDL  305 (503)
T ss_pred             cccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccchhhc
Confidence            3777889999999999999999998888888887665653 244332   22  45789999998876644333

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.46  E-value=0.00012  Score=75.31  Aligned_cols=63  Identities=24%  Similarity=0.298  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeC--CC---c-EEEcCeEEecCChHhHHhhcC
Q 048009          237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLA--DG---A-QVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g---~-~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      .....++...+.++ +.+|++++.|++|..++ +++++|.+.  ++   + .+.++.||++++...+ .+|+
T Consensus       202 ~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~-~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~S-p~LL  271 (542)
T COG2303         202 WSAARAYLKPALKRPNLTLLTGARVRRILLEG-DRAVGVEVEIGDGGTIETAVAAREVVLAAGAINS-PKLL  271 (542)
T ss_pred             eechhhcchhHhcCCceEEecCCEEEEEEEEC-CeeEEEEEEeCCCCceEEEecCceEEEeccccCC-HHHH
Confidence            34455555554455 49999999999999998 888887775  23   2 2567889999998875 4444

>PRK10262 thioredoxin reductase; Provisional

Probab=97.39  E-value=0.0011  Score=63.85  Aligned_cols=34  Identities=32%  Similarity=0.571  Sum_probs=31.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|||+|..|+-.|..|++.|.+|+++++.+
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~  179 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD  179 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence            4689999999999999999999999999999864

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.35  E-value=0.00021  Score=71.98  Aligned_cols=53  Identities=9%  Similarity=0.106  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+.+.+.+.+++.|++++++++|++|..   .   .|++.+|+++.+|.||+++|...
T Consensus       189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~---~v~~~~g~~~~~D~vl~a~G~~p  241 (438)
T PRK13512        189 ADMNQPILDELDKREIPYRLNEEIDAING---N---EVTFKSGKVEHYDMIIEGVGTHP  241 (438)
T ss_pred             HHHHHHHHHHHHhcCCEEEECCeEEEEeC---C---EEEECCCCEEEeCEEEECcCCCc
Confidence            46788888999999999999999999952   2   26677888899999999988543

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.00069  Score=62.45  Aligned_cols=58  Identities=17%  Similarity=0.243  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecC-CCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMIND-SGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +++.+|.+..++..++|..-.+++++.... ++....|++++|..+.++.||+++|...
T Consensus       267 kl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW  325 (520)
T COG3634         267 KLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW  325 (520)
T ss_pred             HHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcch
Confidence            677778888888888888888888887732 2445679999999999999999999877

>PLN02785 Protein HOTHEAD

Probab=97.32  E-value=0.00025  Score=73.50  Aligned_cols=36  Identities=42%  Similarity=0.675  Sum_probs=32.7

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ...||+||||||.+|+.+|.+|++ +.+|+|+|+...
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            346999999999999999999999 699999999864

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.28  E-value=0.002  Score=65.06  Aligned_cols=33  Identities=36%  Similarity=0.514  Sum_probs=30.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+|+|||||..|+-+|..|++.|.+|+|+++.+
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            589999999999999999999999999998853

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.17  E-value=0.0023  Score=65.88  Aligned_cols=34  Identities=44%  Similarity=0.484  Sum_probs=30.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~  385 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD  385 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence            3589999999999999999999999999998643

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.16  E-value=0.023  Score=53.94  Aligned_cols=119  Identities=13%  Similarity=0.141  Sum_probs=70.5

Q ss_pred             HHHHHhccHHHHhhcccCChhHHHHHh-hhhhhccCCCCCCCChHHH--HHHHHhhccCCCCCccccccCchHHHHHHHH
Q 048009          168 FVDLLLSPASKVLNKWFETDVLKATLA-TDAVIGTMSSVHTPGSGYV--LLHHVMGETDGNPGIWSYVEGGMGSVSMAIG  244 (531)
Q Consensus       168 ~~~~~~~~~~~~l~~~~~~~~l~~~~~-~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~  244 (531)
                      ..++...++.++|...--.+.++..+. ..++.+. ....+......  .....+++  +....+-||.-|.+.|.+.+-
T Consensus       217 ~~~~~e~~F~EyL~~~rltp~lqs~vl~aIaM~~~-~~~tt~eGm~at~~fl~slGr--fgntpfLfPlYGqGELpQcFC  293 (547)
T KOG4405|consen  217 YVEFRERPFSEYLKTMRLTPKLQSIVLHAIAMLSE-SQLTTIEGMDATKNFLTSLGR--FGNTPFLFPLYGQGELPQCFC  293 (547)
T ss_pred             HHHhhcCcHHHHHHhcCCChhhHHHHHHHHHhcCc-ccccHHHHHHHHHHHHHHhhc--cCCCcceeeccCCCcchHHHH
Confidence            344455677777776555555555443 2222221 11111111111  11112332  222335689999999999999


Q ss_pred             HHHHHcCcEEEcCcceeEEEecCCCc--eeEEEeCCCcEEEcCeEEec
Q 048009          245 SAAREAGAHIVTRAEVSQLMINDSGR--VNGVQLADGAQVHSSIVLSN  290 (531)
Q Consensus       245 ~~~~~~G~~i~~~~~V~~I~~~~~g~--~~~V~~~~g~~~~ad~VV~a  290 (531)
                      +.+.-.|+-.-++..|+.|..+. +.  +..+....|+.+.+.++|++
T Consensus       294 RlcAVfGgIYcLr~~Vq~ivldk-~s~~~~~~l~s~g~ri~~k~~v~s  340 (547)
T KOG4405|consen  294 RLCAVFGGIYCLRRPVQAIVLDK-ESLDCKAILDSFGQRINAKNFVVS  340 (547)
T ss_pred             HHHHHhcceEEeccchhheeecc-cccchhhhHhhhcchhcceeeeec
Confidence            99988899989999999999876 43  23233346777888888774

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.08  E-value=0.00056  Score=62.57  Aligned_cols=37  Identities=38%  Similarity=0.460  Sum_probs=33.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG   53 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~G   53 (531)
                      ...|-|||||++|.-|||.++++|..|.++|-++.-+
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~   39 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG   39 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence            4679999999999999999999999999999987644

>PRK12831 putative oxidoreductase; Provisional

Probab=97.03  E-value=0.005  Score=62.44  Aligned_cols=34  Identities=32%  Similarity=0.456  Sum_probs=30.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|||||..|+-+|..|.+.|.+|+|+++.+
T Consensus       281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            3689999999999999999999999999998743

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.80  E-value=0.0015  Score=55.44  Aligned_cols=32  Identities=38%  Similarity=0.485  Sum_probs=30.5

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +|+|||||..|.+.|..|+++|++|+|+.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            58999999999999999999999999999975

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.74  E-value=0.01  Score=60.29  Aligned_cols=33  Identities=39%  Similarity=0.572  Sum_probs=30.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERR   49 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~   49 (531)
                      ..+|+|||||..|+-+|..|++.|. +|+|+++.
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~  306 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR  306 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence            4689999999999999999999997 79999874

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=96.60  E-value=0.0058  Score=62.54  Aligned_cols=51  Identities=16%  Similarity=0.375  Sum_probs=44.0

Q ss_pred             HHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChH
Q 048009          242 AIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPY  294 (531)
Q Consensus       242 ~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~  294 (531)
                      .|.+.+++.|.++++++.+++|.. . +++.+|+++||+.+.||-||.|+|..
T Consensus       192 lL~~~le~~Gi~~~l~~~t~ei~g-~-~~~~~vr~~DG~~i~ad~VV~a~GIr  242 (793)
T COG1251         192 LLRRKLEDLGIKVLLEKNTEEIVG-E-DKVEGVRFADGTEIPADLVVMAVGIR  242 (793)
T ss_pred             HHHHHHHhhcceeecccchhhhhc-C-cceeeEeecCCCcccceeEEEecccc
Confidence            356667889999999999988886 4 77889999999999999999998855

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.51  E-value=0.0026  Score=64.24  Aligned_cols=38  Identities=34%  Similarity=0.484  Sum_probs=34.5

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHc-CCcEEEEccCCCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARA-GLSVAVLERRHVI   52 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~-G~~V~v~E~~~~~   52 (531)
                      ...||.||||||-||...|.+|++. ..+|+|+|+...+
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            4579999999999999999999997 5899999998765

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.37  E-value=0.0045  Score=53.71  Aligned_cols=32  Identities=41%  Similarity=0.579  Sum_probs=28.3

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +|+|||+|..|..-|..++..|++|+++|.++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            58999999999999999999999999999964

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.35  E-value=0.0041  Score=54.17  Aligned_cols=34  Identities=35%  Similarity=0.318  Sum_probs=27.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ++|.|||.|..||..|..|+++|++|+.+|.++.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            5799999999999999999999999999999753

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.26  E-value=0.043  Score=55.91  Aligned_cols=47  Identities=21%  Similarity=0.328  Sum_probs=35.7

Q ss_pred             HHHHcCcEEEcCcceeEEEecCCCceeEEEeC-----CC---------cEEEcCeEEecCCh
Q 048009          246 AAREAGAHIVTRAEVSQLMINDSGRVNGVQLA-----DG---------AQVHSSIVLSNATP  293 (531)
Q Consensus       246 ~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~-----~g---------~~~~ad~VV~aa~~  293 (531)
                      .+++.|+++++++.+++|..++ |++.+|++.     +|         .++.+|.||+|+|.
T Consensus       338 ~~~~~GV~i~~~~~~~~i~~~~-g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~  398 (471)
T PRK12810        338 NAHEEGVEREFNVQTKEFEGEN-GKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF  398 (471)
T ss_pred             HHHHcCCeEEeccCceEEEccC-CEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence            3567799999999999997655 787776643     22         36889999998873

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.17  E-value=0.054  Score=51.77  Aligned_cols=37  Identities=32%  Similarity=0.333  Sum_probs=33.1

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcC-CcEEEEccCCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAG-LSVAVLERRHV   51 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G-~~V~v~E~~~~   51 (531)
                      +..+|++.||-|+.-|+.|+.|.+++ .+++.+||.+.
T Consensus         3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~   40 (436)
T COG3486           3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD   40 (436)
T ss_pred             CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence            35699999999999999999999985 88999999764

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=96.15  E-value=0.0065  Score=57.71  Aligned_cols=36  Identities=33%  Similarity=0.551  Sum_probs=31.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHc----CCcEEEEccCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARA----GLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~----G~~V~v~E~~~~   51 (531)
                      ..+||+|||||+.|++.|..|...    -++|+|+|..+.
T Consensus        35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s   74 (481)
T KOG3855|consen   35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS   74 (481)
T ss_pred             ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence            479999999999999999999865    478999999843

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=96.08  E-value=0.0066  Score=55.06  Aligned_cols=51  Identities=14%  Similarity=0.075  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCC
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGN  304 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~  304 (531)
                      .+...|.+.+.++|+++... +|+++..-.          +   -.+|.||.++|.+.  .+|..++
T Consensus       152 ~ylpyl~k~l~e~Gvef~~r-~v~~l~E~~----------~---~~~DVivNCtGL~a--~~L~gDd  202 (342)
T KOG3923|consen  152 KYLPYLKKRLTENGVEFVQR-RVESLEEVA----------R---PEYDVIVNCTGLGA--GKLAGDD  202 (342)
T ss_pred             hhhHHHHHHHHhcCcEEEEe-eeccHHHhc----------c---CCCcEEEECCcccc--ccccCCc
Confidence            56777889999999998654 777665321          1   36899999999888  6777654

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.06  E-value=0.049  Score=55.36  Aligned_cols=34  Identities=29%  Similarity=0.435  Sum_probs=30.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      ..+|+|||+|..|+-+|..+.+.|. +|+|+++.+
T Consensus       282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~  316 (467)
T TIGR01318       282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD  316 (467)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence            3689999999999999999999995 799998854

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.00  E-value=0.0075  Score=61.41  Aligned_cols=34  Identities=38%  Similarity=0.460  Sum_probs=31.9

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      +|.|||.|.+|++||..|+++|++|+++|++...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            6899999999999999999999999999998764

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=95.97  E-value=0.052  Score=52.72  Aligned_cols=66  Identities=21%  Similarity=0.342  Sum_probs=45.9

Q ss_pred             CCCCccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEE-EecCCCc-eeEEEeCC--Cc-EEEcCeEEecCChH
Q 048009          224 GNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQL-MINDSGR-VNGVQLAD--GA-QVHSSIVLSNATPY  294 (531)
Q Consensus       224 ~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I-~~~~~g~-~~~V~~~~--g~-~~~ad~VV~aa~~~  294 (531)
                      ...|.| -++||+.++.+.|.+   ..|+++ ++++|++| ...+++. ...|...+  +. .-.+|.||+|++..
T Consensus       116 a~~gl~-sV~GGN~qI~~~ll~---~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~  186 (368)
T PF07156_consen  116 ATGGLW-SVEGGNWQIFEGLLE---ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQ  186 (368)
T ss_pred             ccCCce-EecCCHHHHHHHHHH---HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCcc
Confidence            345677 899999999999955   678899 89999999 3333232 23454443  22 34579999976654

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.92  E-value=0.0093  Score=61.08  Aligned_cols=35  Identities=29%  Similarity=0.353  Sum_probs=32.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||+|.+|+++|..|+++|++|+++|+++.
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            35799999999999999999999999999998764

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.91  E-value=0.011  Score=56.73  Aligned_cols=37  Identities=35%  Similarity=0.353  Sum_probs=33.3

Q ss_pred             cCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           14 KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        14 ~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++..++|+|||+|..|..-|..|++.|++|+++.|+.
T Consensus         2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          2 DSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            4456789999999999999999999999999999864

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.88  E-value=0.0093  Score=56.98  Aligned_cols=34  Identities=29%  Similarity=0.340  Sum_probs=31.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      .+|.|||+|..|.+.|..|+++|++|+++++++.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            4799999999999999999999999999999753

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.83  E-value=0.072  Score=56.77  Aligned_cols=33  Identities=27%  Similarity=0.485  Sum_probs=28.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERR   49 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~   49 (531)
                      ..+|+|||||..|+-+|..+.+.|. +|++++++
T Consensus       468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~  501 (654)
T PRK12769        468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRR  501 (654)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEec
Confidence            3589999999999999999999985 69988875

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.80  E-value=0.011  Score=55.67  Aligned_cols=34  Identities=35%  Similarity=0.422  Sum_probs=31.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      .+|+|||+|..|..-|..|++.|++|+++|.++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            4799999999999999999999999999999753

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.78  E-value=0.069  Score=51.65  Aligned_cols=35  Identities=26%  Similarity=0.318  Sum_probs=27.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      ...+|+|||||.++.-.+..|.+++.  +|+++=|+.
T Consensus       189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~  225 (341)
T PF13434_consen  189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP  225 (341)
T ss_dssp             --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred             CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence            46899999999999999999999874  788887754

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.77  E-value=0.012  Score=59.45  Aligned_cols=35  Identities=34%  Similarity=0.465  Sum_probs=32.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      .+|+|||||..|+.+|..|++.|.+|+|+|+.+.+
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  192 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI  192 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            57999999999999999999999999999998765

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=95.63  E-value=0.013  Score=59.79  Aligned_cols=35  Identities=37%  Similarity=0.528  Sum_probs=32.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      .+|+|||||.+|+-+|..|++.|.+|+|+|+.+.+
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i  215 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI  215 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence            68999999999999999999999999999998753

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.62  E-value=0.015  Score=55.03  Aligned_cols=33  Identities=24%  Similarity=0.251  Sum_probs=31.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+|+|||+|..|.+.|..|+++|++|+++|.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            579999999999999999999999999999864

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=95.58  E-value=0.095  Score=58.52  Aligned_cols=47  Identities=26%  Similarity=0.294  Sum_probs=35.2

Q ss_pred             HHHcCcEEEcCcceeEEEecCCCceeEEEeC----CCcEEEcCeEEecCChHh
Q 048009          247 AREAGAHIVTRAEVSQLMINDSGRVNGVQLA----DGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       247 ~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~----~g~~~~ad~VV~aa~~~~  295 (531)
                      ++++|++|++++.|++|..+  +++.+|++.    +++++.+|.|+++.|...
T Consensus       361 L~~~GV~i~~~~~v~~i~g~--~~v~~V~l~~~~g~~~~i~~D~V~va~G~~P  411 (985)
T TIGR01372       361 ARELGIEVLTGHVVAATEGG--KRVSGVAVARNGGAGQRLEADALAVSGGWTP  411 (985)
T ss_pred             HHHcCCEEEcCCeEEEEecC--CcEEEEEEEecCCceEEEECCEEEEcCCcCc
Confidence            45778999999999999754  445556654    456799999999877543

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.58  E-value=0.018  Score=54.80  Aligned_cols=34  Identities=24%  Similarity=0.145  Sum_probs=31.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      -.+|+|||+|..|..-|..++.+|++|+++|.++
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3579999999999999999999999999999975

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.56  E-value=0.015  Score=52.44  Aligned_cols=34  Identities=26%  Similarity=0.497  Sum_probs=31.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ++++|||+|-.|.+.|..|.+.|++|+++|+++.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            4799999999999999999999999999999864

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=95.43  E-value=0.018  Score=58.63  Aligned_cols=36  Identities=33%  Similarity=0.446  Sum_probs=33.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+|+|||||..|+.+|..|++.|.+|+|+|+.+.+
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  205 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI  205 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence            368999999999999999999999999999998754

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR02053 MerA mercuric reductase

Probab=95.34  E-value=0.02  Score=58.36  Aligned_cols=35  Identities=37%  Similarity=0.530  Sum_probs=32.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      .+|+|||+|..|+-+|..|++.|.+|+|+|+.+++
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  201 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL  201 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence            68999999999999999999999999999998653

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.34  E-value=0.017  Score=54.57  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=31.2

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      .+|+|||+|..|...|..|+++|++|+++|+++.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            3699999999999999999999999999999753

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.34  E-value=0.018  Score=57.26  Aligned_cols=35  Identities=29%  Similarity=0.156  Sum_probs=32.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|.|||.|..|++.|..|+++|++|+++++++.
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998754

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.32  E-value=0.02  Score=54.26  Aligned_cols=34  Identities=29%  Similarity=0.216  Sum_probs=31.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|||+|..|...|..|+++|++|+++|+++
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3579999999999999999999999999999864

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.32  E-value=0.024  Score=47.69  Aligned_cols=31  Identities=42%  Similarity=0.550  Sum_probs=29.4

Q ss_pred             EEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           20 ALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        20 vvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      |+|||+|..|+..|+.|++.|++|+++-+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999999999999965

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=95.24  E-value=0.023  Score=57.53  Aligned_cols=51  Identities=6%  Similarity=-0.013  Sum_probs=39.1

Q ss_pred             HHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC-cEEEcCeEEecCChHh
Q 048009          244 GSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG-AQVHSSIVLSNATPYK  295 (531)
Q Consensus       244 ~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g-~~~~ad~VV~aa~~~~  295 (531)
                      .+.++++|+++++++.|++|..++ +....|++.+| +.+.+|.||+++|...
T Consensus       214 ~~~l~~~gI~i~~~~~v~~i~~~~-~~~~~v~~~~g~~~i~~D~vi~a~G~~p  265 (450)
T TIGR01421       214 TEEYEKEGINVHKLSKPVKVEKTV-EGKLVIHFEDGKSIDDVDELIWAIGRKP  265 (450)
T ss_pred             HHHHHHcCCEEEcCCEEEEEEEeC-CceEEEEECCCcEEEEcCEEEEeeCCCc
Confidence            444667899999999999998754 33234777777 5699999999988654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.21  E-value=0.024  Score=57.80  Aligned_cols=35  Identities=34%  Similarity=0.438  Sum_probs=32.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      .+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i  209 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV  209 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence            58999999999999999999999999999998764

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.18  E-value=0.029  Score=48.19  Aligned_cols=35  Identities=29%  Similarity=0.322  Sum_probs=30.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +..+|+|+|+|.+|+.||..|...|.+|+++|.+.
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            35899999999999999999999999999999864

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.18  E-value=0.027  Score=57.22  Aligned_cols=34  Identities=29%  Similarity=0.551  Sum_probs=32.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|||+|..|+++|..|+++|++|+++|+..
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            5789999999999999999999999999999975

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=95.17  E-value=0.025  Score=57.47  Aligned_cols=35  Identities=29%  Similarity=0.450  Sum_probs=32.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      .+++|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l  205 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL  205 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            58999999999999999999999999999998753

>PRK07846 mycothione reductase; Reviewed

Probab=95.17  E-value=0.024  Score=57.33  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=33.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l  201 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL  201 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            368999999999999999999999999999997753

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=95.14  E-value=0.067  Score=55.79  Aligned_cols=58  Identities=16%  Similarity=0.237  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..|...|.+.+++.|++|+.++.|+++..++ |+|.||..   .+|+  .+.|+.||+|+|...
T Consensus       119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~-g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~  181 (565)
T TIGR01816       119 HAILHTLYQQNLKADTSFFNEYFALDLLMED-GECRGVIAYCLETGEIHRFRAKAVVLATGGYG  181 (565)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEeeC-CEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence            4789999999999999999999999999876 99999876   2564  578999999999876

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=95.10  E-value=0.028  Score=56.13  Aligned_cols=36  Identities=36%  Similarity=0.507  Sum_probs=33.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+++|||||..|+--|..+++.|.+|+|+|+.+++
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i  208 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI  208 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            356999999999999999999999999999999874

>PRK06370 mercuric reductase; Validated

Probab=95.09  E-value=0.028  Score=57.32  Aligned_cols=36  Identities=36%  Similarity=0.465  Sum_probs=33.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG   53 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~G   53 (531)
                      .+|+|||||..|+-+|..|++.|.+|+|+|+.+.+.
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l  207 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL  207 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC
Confidence            689999999999999999999999999999987653

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.08  E-value=0.027  Score=57.44  Aligned_cols=35  Identities=34%  Similarity=0.423  Sum_probs=32.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      .+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  207 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI  207 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence            57999999999999999999999999999998764

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.06  E-value=0.028  Score=57.23  Aligned_cols=36  Identities=33%  Similarity=0.390  Sum_probs=33.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i  209 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI  209 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            368999999999999999999999999999997754

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.01  E-value=0.029  Score=57.23  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=31.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      .+|+|||||..|+-+|..|++.|.+|+|+|+.++
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~  206 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR  206 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            5899999999999999999999999999998764

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=95.01  E-value=0.015  Score=51.73  Aligned_cols=33  Identities=24%  Similarity=0.481  Sum_probs=28.0

Q ss_pred             cEEEECCChhHHHHHHHHHHc--CCcEEEEccCCC
Q 048009           19 DALVIGGGHNGLTAAAYLARA--GLSVAVLERRHV   51 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~   51 (531)
                      +.+||||||||.+||-.|+..  ..+|+|+-+++.
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~   35 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF   35 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence            468999999999999999986  467888887654

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.97  E-value=0.083  Score=55.15  Aligned_cols=59  Identities=15%  Similarity=0.159  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..|...|.+.+++.|++|+.++.++++..+++|+|.||..   .+|+  .+.|+.||+|+|...
T Consensus       126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  189 (570)
T PRK05675        126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG  189 (570)
T ss_pred             HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence            4788999998989999999999999999864389999876   3565  578999999999876

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=94.95  E-value=0.033  Score=48.38  Aligned_cols=41  Identities=20%  Similarity=0.362  Sum_probs=34.9

Q ss_pred             ccccccCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009            9 TTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus         9 ~~~~~~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++..+. +...|.|||||..|.-.|...+..|+.|.|++++.
T Consensus         4 ~s~~~~-~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~   44 (298)
T KOG2304|consen    4 ASANMA-EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE   44 (298)
T ss_pred             cccccc-cccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence            333444 45789999999999999999999999999999975

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.91  E-value=0.032  Score=52.62  Aligned_cols=33  Identities=30%  Similarity=0.303  Sum_probs=30.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+|+|||+|..|.+.|..|+++|++|+++|.++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~   36 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD   36 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence            479999999999999999999999999999864

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=94.87  E-value=0.035  Score=56.57  Aligned_cols=36  Identities=42%  Similarity=0.556  Sum_probs=33.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+|+|||+|..|+-.|..|++.|.+|+|+|+.+++
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  204 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI  204 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence            368999999999999999999999999999998764

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=94.86  E-value=0.033  Score=56.77  Aligned_cols=37  Identities=22%  Similarity=0.350  Sum_probs=33.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG   53 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~G   53 (531)
                      ..+|+|||||..|+-.|..|++.|.+|+|+|+++++.
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l  211 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL  211 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence            3689999999999999999999999999999987653

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.81  E-value=0.033  Score=53.14  Aligned_cols=33  Identities=33%  Similarity=0.428  Sum_probs=31.2

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|.|||.|-.||+.|..|++.||+|+.+|...
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            589999999999999999999999999999875

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.76  E-value=0.035  Score=53.06  Aligned_cols=33  Identities=33%  Similarity=0.445  Sum_probs=30.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|+|||+|..|...|..|++.|++|+++.++.
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            369999999999999999999999999999853

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.74  E-value=0.037  Score=52.44  Aligned_cols=33  Identities=27%  Similarity=0.356  Sum_probs=31.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+|.|||+|..|...|..|+++|++|+++|+++
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            469999999999999999999999999999965

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=94.69  E-value=0.039  Score=56.36  Aligned_cols=35  Identities=31%  Similarity=0.386  Sum_probs=32.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      .+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  218 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF  218 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence            58999999999999999999999999999998764

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.67  E-value=0.039  Score=52.77  Aligned_cols=31  Identities=35%  Similarity=0.398  Sum_probs=29.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEcc
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLER   48 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~   48 (531)
                      ++|+|||+|..|.+.|..|++.|++|+++.+
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            3699999999999999999999999999988

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.64  E-value=0.046  Score=52.81  Aligned_cols=34  Identities=29%  Similarity=0.401  Sum_probs=31.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .++|.|||+|..|.+.|..|++.|++|++++++.
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4589999999999999999999999999999964

>TIGR03452 mycothione_red mycothione reductase

Probab=94.61  E-value=0.042  Score=55.65  Aligned_cols=36  Identities=19%  Similarity=0.336  Sum_probs=32.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+++|||||..|+-.|..|++.|.+|+|+|+.+.+
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l  204 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL  204 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            368999999999999999999999999999997653

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.54  E-value=0.041  Score=53.54  Aligned_cols=33  Identities=30%  Similarity=0.390  Sum_probs=30.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|.|||+|..|.+.|..|+++|++|++++++.
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            579999999999999999999999999999853

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.52  E-value=0.052  Score=51.87  Aligned_cols=34  Identities=29%  Similarity=0.356  Sum_probs=31.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .++|.|||+|..|.+.|..|+++|++|+++.++.
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4689999999999999999999999999999975

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.51  E-value=0.047  Score=52.03  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=30.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHcC--CcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAG--LSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G--~~V~v~E~~~~   51 (531)
                      ++|+|||+|..|.++|+.|+.+|  .+|.++|++..
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            37999999999999999999999  58999998753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK04148 hypothetical protein; Provisional

Probab=94.49  E-value=0.04  Score=44.54  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=31.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..++++||.| .|.+.|..|++.|++|+.+|.++.
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            3679999999 999999999999999999999875

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.48  E-value=0.052  Score=51.75  Aligned_cols=34  Identities=35%  Similarity=0.440  Sum_probs=31.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .++|+|||+|..|...|..|++.|++|+++.|+.
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            4689999999999999999999999999999963

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.44  E-value=0.055  Score=51.38  Aligned_cols=34  Identities=32%  Similarity=0.328  Sum_probs=30.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC-cEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL-SVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~~   51 (531)
                      .+|+|||+|..|...|+.|+.+|+ +|+++|....
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~   36 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG   36 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            589999999999999999999887 8999998543

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.43  E-value=0.054  Score=46.26  Aligned_cols=34  Identities=35%  Similarity=0.407  Sum_probs=29.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +.+|.|||-|..|...|..|.++|++|.++++++
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            3689999999999999999999999999999874

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.43  E-value=0.041  Score=54.94  Aligned_cols=33  Identities=36%  Similarity=0.367  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      +|.|||.|..|+..|..|+++|++|++++++..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            699999999999999999999999999999754

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=94.35  E-value=0.055  Score=55.09  Aligned_cols=36  Identities=22%  Similarity=0.356  Sum_probs=33.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG   53 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~G   53 (531)
                      .+++|||+|..|+-.|..|++.|.+|+|+|+.+++.
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l  213 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL  213 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC
Confidence            579999999999999999999999999999987654

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.23  E-value=0.089  Score=43.21  Aligned_cols=35  Identities=34%  Similarity=0.443  Sum_probs=31.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCc-EEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLS-VAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~-V~v~E~~~   50 (531)
                      ...+|+|||+|-+|-+++..|++.|.+ |+|+-|+.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            358899999999999999999999977 99999863

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=94.21  E-value=0.056  Score=56.93  Aligned_cols=35  Identities=20%  Similarity=0.152  Sum_probs=32.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      .+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l  347 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL  347 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence            57999999999999999999999999999998764

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.15  E-value=0.077  Score=45.22  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCh-hHHHHHHHHHHcCCcEEEEccC
Q 048009           16 KKWDALVIGGGH-NGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        16 ~~~dvvIIGaGi-aGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      ...+|+|||+|- .|..+|..|.++|.+|+|+.++
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            358999999995 6999999999999999999985

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PTZ00058 glutathione reductase; Provisional

Probab=94.15  E-value=0.057  Score=55.92  Aligned_cols=35  Identities=14%  Similarity=0.152  Sum_probs=32.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~  271 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR  271 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence            46899999999999999999999999999999765

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=94.13  E-value=0.06  Score=54.51  Aligned_cols=49  Identities=16%  Similarity=0.278  Sum_probs=38.6

Q ss_pred             HHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          245 SAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       245 ~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +.+++.|++++++++|++|..++ +.+ .|.+.+|+++.+|.||+++|...
T Consensus       215 ~~l~~~gV~i~~~~~v~~i~~~~-~~~-~v~~~~g~~i~~D~viva~G~~p  263 (446)
T TIGR01424       215 RNMEGRGIRIHPQTSLTSITKTD-DGL-KVTLSHGEEIVADVVLFATGRSP  263 (446)
T ss_pred             HHHHHCCCEEEeCCEEEEEEEcC-CeE-EEEEcCCcEeecCEEEEeeCCCc
Confidence            34567899999999999998755 333 36777888899999999988554

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=94.07  E-value=0.064  Score=50.92  Aligned_cols=33  Identities=30%  Similarity=0.368  Sum_probs=30.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+|.|||+|..|...|..|++.|++|+++|+++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            469999999999999999999999999999865

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=94.03  E-value=0.068  Score=51.62  Aligned_cols=33  Identities=33%  Similarity=0.438  Sum_probs=31.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|.|||+|..|...|..|++.|++|+++++++
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            479999999999999999999999999999964

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.95  E-value=0.072  Score=51.05  Aligned_cols=33  Identities=33%  Similarity=0.504  Sum_probs=30.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+|.|||+|..|.+.|..|++.|++|++++++.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999864

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=93.94  E-value=0.071  Score=54.49  Aligned_cols=35  Identities=31%  Similarity=0.324  Sum_probs=32.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      -.+|.|||+|..|..-|..|+++|++|+|+|+++.
T Consensus         7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            35699999999999999999999999999999764

>PLN02507 glutathione reductase

Probab=93.86  E-value=0.072  Score=54.68  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=32.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      .+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~  238 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP  238 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence            58999999999999999999999999999997753

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=93.85  E-value=0.076  Score=53.73  Aligned_cols=49  Identities=16%  Similarity=0.268  Sum_probs=37.9

Q ss_pred             HHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          244 GSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       244 ~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+.++++|++++++++|++|..++ +.+ .|.+.+++ +.+|.||+++|...
T Consensus       206 ~~~l~~~gV~v~~~~~v~~i~~~~-~~v-~v~~~~g~-i~~D~vl~a~G~~p  254 (441)
T PRK08010        206 ATILRDQGVDIILNAHVERISHHE-NQV-QVHSEHAQ-LAVDALLIASGRQP  254 (441)
T ss_pred             HHHHHhCCCEEEeCCEEEEEEEcC-CEE-EEEEcCCe-EEeCEEEEeecCCc
Confidence            445678899999999999998765 544 35555664 89999999988665

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=93.85  E-value=0.061  Score=54.85  Aligned_cols=34  Identities=32%  Similarity=0.331  Sum_probs=31.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      .+|.|||+|..|...|..|+++|++|+|+|+++.
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5699999999999999999999999999999754

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=93.83  E-value=0.11  Score=46.08  Aligned_cols=34  Identities=32%  Similarity=0.502  Sum_probs=31.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|||||-.|+..+..|.+.|.+|+|+....
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4689999999999999999999999999998753

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06116 glutathione reductase; Validated

Probab=93.76  E-value=0.079  Score=53.78  Aligned_cols=36  Identities=19%  Similarity=0.190  Sum_probs=32.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+|+|||+|..|+-.|..|++.|.+|+++++.+.+
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  202 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP  202 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            368999999999999999999999999999997754

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=93.66  E-value=0.11  Score=45.90  Aligned_cols=34  Identities=26%  Similarity=0.359  Sum_probs=31.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERR   49 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~   49 (531)
                      ...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            46899999999999999999999998 59999996

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=93.65  E-value=0.092  Score=50.88  Aligned_cols=34  Identities=35%  Similarity=0.458  Sum_probs=31.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcC-CcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAG-LSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G-~~V~v~E~~~   50 (531)
                      +.+|+|||+|-.|.++|+.|+++| .+|+|.+|+.
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence            368999999999999999999999 8999999973

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=93.65  E-value=0.071  Score=55.57  Aligned_cols=36  Identities=33%  Similarity=0.504  Sum_probs=33.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+|+|||||..|+-.|..|++.|.+|+|+++.+.+
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~  178 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF  178 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence            468999999999999999999999999999998764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.64  E-value=0.084  Score=50.96  Aligned_cols=32  Identities=28%  Similarity=0.430  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +|.|||+|..|.+-|..|++.|++|+++.++.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            69999999999999999999999999999854

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=93.61  E-value=0.12  Score=45.81  Aligned_cols=34  Identities=21%  Similarity=0.354  Sum_probs=31.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      ...+|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            4579999999999999999999999999999863

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=93.56  E-value=0.09  Score=52.04  Aligned_cols=36  Identities=36%  Similarity=0.517  Sum_probs=33.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+|+|+|-|.+|++||..|.++|.+|+++|.++..
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            578999999999999999999999999999987765

>TIGR00518 alaDH alanine dehydrogenase

Probab=93.56  E-value=0.098  Score=51.19  Aligned_cols=34  Identities=32%  Similarity=0.435  Sum_probs=31.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|||+|..|+.+|..|...|.+|++++++.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4679999999999999999999999999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=93.49  E-value=0.086  Score=49.56  Aligned_cols=32  Identities=25%  Similarity=0.236  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +|.|||.|..|.+.|..|+++|++|+++++++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999999864

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=93.42  E-value=0.083  Score=54.03  Aligned_cols=33  Identities=39%  Similarity=0.441  Sum_probs=30.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+|.|||+|..|.+-|..|+++|++|+|+++++
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            479999999999999999999999999999864

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=93.40  E-value=0.14  Score=43.27  Aligned_cols=33  Identities=27%  Similarity=0.346  Sum_probs=30.2

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEc
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLE   47 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E   47 (531)
                      -...+|+|||||-.|..-|..|.+.|++|+|+.
T Consensus        11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            346789999999999999999999999999994

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=93.35  E-value=0.088  Score=54.41  Aligned_cols=35  Identities=40%  Similarity=0.382  Sum_probs=32.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||||..|+-+|..|+..+.+|+|+++.+.
T Consensus       351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~  385 (517)
T PRK15317        351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE  385 (517)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence            35899999999999999999999999999998764

>PLN02546 glutathione reductase

Probab=93.35  E-value=0.096  Score=54.27  Aligned_cols=36  Identities=22%  Similarity=0.272  Sum_probs=32.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+|+|||||..|+-.|..|++.|.+|+|+|+.+.+
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~i  287 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKV  287 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccc
Confidence            368999999999999999999999999999997653

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=93.33  E-value=0.1  Score=49.79  Aligned_cols=63  Identities=16%  Similarity=0.196  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCC
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPG  303 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~  303 (531)
                      -|.+.-.+.+++.|+.++.|..|+++.... +++. +.++||.++..|.||+|+|--. -..|...
T Consensus       394 yls~wt~ekir~~GV~V~pna~v~sv~~~~-~nl~-lkL~dG~~l~tD~vVvavG~eP-N~ela~~  456 (659)
T KOG1346|consen  394 YLSQWTIEKIRKGGVDVRPNAKVESVRKCC-KNLV-LKLSDGSELRTDLVVVAVGEEP-NSELAEA  456 (659)
T ss_pred             HHHHHHHHHHHhcCceeccchhhhhhhhhc-cceE-EEecCCCeeeeeeEEEEecCCC-chhhccc
Confidence            456666778899999999999999999877 6665 8999999999999999887443 2345443

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=93.32  E-value=0.099  Score=51.46  Aligned_cols=32  Identities=22%  Similarity=0.288  Sum_probs=29.0

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      +|.|||.|..|+..|..|+. |++|+++|.+..
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~   33 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS   33 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence            69999999999999988885 999999999754

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=93.21  E-value=0.075  Score=41.26  Aligned_cols=35  Identities=34%  Similarity=0.427  Sum_probs=31.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +..+|+|||||-.|..-+..|.+.|.+|+|+....
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            45789999999999999999999999999999873

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.20  E-value=0.13  Score=52.01  Aligned_cols=36  Identities=31%  Similarity=0.415  Sum_probs=32.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+|+|+|.|.+|+++|..|+++|++|+++|..+..
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~   40 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP   40 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence            457999999999999999999999999999987653

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.13  E-value=0.1  Score=52.57  Aligned_cols=34  Identities=24%  Similarity=0.208  Sum_probs=30.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHcC--CcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAG--LSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G--~~V~v~E~~~~   51 (531)
                      ++|+|||+|-.|+..|..|+++|  ++|+.+|.+..
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            67999999999999999999985  78999998653

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=93.10  E-value=0.12  Score=46.57  Aligned_cols=33  Identities=30%  Similarity=0.379  Sum_probs=29.4

Q ss_pred             CcEEEEC-CChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIG-GGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIG-aGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|.||| +|..|.+.|..|++.|++|+++.+++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            3699997 79999999999999999999997753

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=93.09  E-value=0.11  Score=50.81  Aligned_cols=33  Identities=27%  Similarity=0.307  Sum_probs=30.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCc-EEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLS-VAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~-V~v~E~~~   50 (531)
                      .+|+|||+|..|+-+|..|++.|.+ |+|+++.+
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            5799999999999999999999987 99999854

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=93.08  E-value=0.084  Score=48.49  Aligned_cols=34  Identities=29%  Similarity=0.402  Sum_probs=31.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .-+|+|||||+.|.-||....-.|-+|+|+|.+.
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~  201 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI  201 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence            4789999999999999999999999999999973

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.06  E-value=0.11  Score=52.70  Aligned_cols=33  Identities=18%  Similarity=0.416  Sum_probs=31.2

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+|.|+|.|.+|+++|..|.++|++|++.|+++
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            579999999999999999999999999999875

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=93.02  E-value=0.13  Score=52.63  Aligned_cols=32  Identities=38%  Similarity=0.543  Sum_probs=30.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      -+++|||||..|+-.|..|++.|.+|+|+++.
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            47999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK14694 putative mercuric reductase; Provisional

Probab=93.01  E-value=0.13  Score=52.49  Aligned_cols=32  Identities=41%  Similarity=0.420  Sum_probs=30.2

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      .+|+|||+|..|+-.|..|++.|.+|+|+++.
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~  210 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARS  210 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence            58999999999999999999999999999874

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=92.92  E-value=0.12  Score=52.63  Aligned_cols=37  Identities=24%  Similarity=0.320  Sum_probs=31.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHH---cCCcEEEEccCCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLAR---AGLSVAVLERRHVIG   53 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~---~G~~V~v~E~~~~~G   53 (531)
                      ..+|+|||||..|+-.|..++.   .|.+|+|+|+.+++.
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il  226 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL  226 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence            3579999999999999977654   499999999988753

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=92.82  E-value=0.13  Score=49.01  Aligned_cols=35  Identities=31%  Similarity=0.589  Sum_probs=31.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||+|..|+-+|..|++.+.+|+++++.+.
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~  175 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDK  175 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcc
Confidence            35899999999999999999999999999999653

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PTZ00052 thioredoxin reductase; Provisional

Probab=92.79  E-value=0.14  Score=52.64  Aligned_cols=32  Identities=31%  Similarity=0.518  Sum_probs=30.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      .+++|||||..|+-.|..|++.|.+|+|++++
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            48999999999999999999999999999874

>PRK13748 putative mercuric reductase; Provisional

Probab=92.77  E-value=0.13  Score=53.89  Aligned_cols=32  Identities=34%  Similarity=0.365  Sum_probs=30.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      .+|+|||||..|+-.|..|++.|.+|+|+++.
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~  302 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARS  302 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence            58999999999999999999999999999984

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.73  E-value=0.18  Score=44.53  Aligned_cols=33  Identities=24%  Similarity=0.216  Sum_probs=30.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      ...|+|+|.|-.|..+|..|.+.|++|+++|++
T Consensus        28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            467999999999999999999999999999876

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=92.73  E-value=0.12  Score=47.66  Aligned_cols=37  Identities=38%  Similarity=0.596  Sum_probs=32.1

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHc-C-CcEEEEccCCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARA-G-LSVAVLERRHV   51 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~-G-~~V~v~E~~~~   51 (531)
                      .++++|+|||||.+|++.|..+.++ | -+|-|+|-...
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~   75 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED   75 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence            4689999999999999999999976 5 47999998754

>PRK14727 putative mercuric reductase; Provisional

Probab=92.71  E-value=0.15  Score=52.12  Aligned_cols=32  Identities=31%  Similarity=0.306  Sum_probs=30.2

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      .+|+|||+|..|+-.|..|++.|.+|+|+++.
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~  220 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS  220 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence            57999999999999999999999999999974

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=92.68  E-value=0.12  Score=52.35  Aligned_cols=36  Identities=31%  Similarity=0.374  Sum_probs=32.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      +..+|+|||+|.+||.|+..+...|.+|+++|.++.
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~  199 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE  199 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            357899999999999999999999999999999753

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=92.65  E-value=0.13  Score=48.84  Aligned_cols=32  Identities=28%  Similarity=0.255  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +|.|||.|..|...|..|++.|++|+++++++
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            58999999999999999999999999999874

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK06223 malate dehydrogenase; Reviewed

Probab=92.63  E-value=0.16  Score=48.48  Aligned_cols=34  Identities=29%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC-cEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL-SVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~~   51 (531)
                      .+|+|||+|..|.+.|..|+..|+ +|.++|.+..
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            689999999999999999999876 9999998653

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=92.53  E-value=0.16  Score=47.06  Aligned_cols=34  Identities=35%  Similarity=0.353  Sum_probs=31.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      .+|.+||-|..|...|.+|.++||+|+|+++++.
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~   34 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPE   34 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChh
Confidence            4799999999999999999999999999999865

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=92.53  E-value=0.12  Score=55.40  Aligned_cols=34  Identities=26%  Similarity=0.233  Sum_probs=31.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      .+|+|||||..|...|..++..|++|+++|.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5799999999999999999999999999999753

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.50  E-value=0.17  Score=51.36  Aligned_cols=34  Identities=29%  Similarity=0.419  Sum_probs=31.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...|+|+|+|-+|+++|..|+++|++|++.|++.
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            3569999999999999999999999999999765

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.38  E-value=0.15  Score=51.86  Aligned_cols=35  Identities=17%  Similarity=0.002  Sum_probs=31.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|+|.|.+|.+||..|.++|.+|++.|.++.
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~   42 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNA   42 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence            35799999999999999999999999999997543

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=92.29  E-value=0.21  Score=47.86  Aligned_cols=35  Identities=20%  Similarity=0.263  Sum_probs=31.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~~   51 (531)
                      ..+|+|||+|..|.+.|+.|+..|+ +|.|+|.++.
T Consensus         6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            4689999999999999999999995 8999998765

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=92.25  E-value=0.16  Score=54.43  Aligned_cols=34  Identities=24%  Similarity=0.209  Sum_probs=31.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      -.+|+|||||..|...|+.++.+|++|+++|.+.
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (714)
T TIGR02437       313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ  346 (714)
T ss_pred             cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4579999999999999999999999999999975

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=92.25  E-value=0.34  Score=47.60  Aligned_cols=53  Identities=21%  Similarity=0.224  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+...+.+.++++|++++++++|++|.  + +   .|.+.+|+++.+|.||+++|...
T Consensus       191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~-~---~v~~~~g~~i~~D~vi~a~G~~p  243 (364)
T TIGR03169       191 AKVRRLVLRLLARRGIEVHEGAPVTRGP--D-G---ALILADGRTLPADAILWATGARA  243 (364)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeEEEc--C-C---eEEeCCCCEEecCEEEEccCCCh
Confidence            4567788888999999999999999885  2 3   37788888999999999888443

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=92.21  E-value=0.19  Score=47.19  Aligned_cols=33  Identities=33%  Similarity=0.334  Sum_probs=30.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      -.+|.|||||..|-.-|..++..|++|+++|.+
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~   35 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS   35 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence            357999999999999999999988999999997

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=92.17  E-value=0.3  Score=36.42  Aligned_cols=32  Identities=31%  Similarity=0.438  Sum_probs=29.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHc-CCcEEEEcc
Q 048009           17 KWDALVIGGGHNGLTAAAYLARA-GLSVAVLER   48 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~-G~~V~v~E~   48 (531)
                      ..+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            46899999999999999999998 688999998

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.14  E-value=0.16  Score=51.89  Aligned_cols=34  Identities=29%  Similarity=0.310  Sum_probs=31.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|+|.|.+|++++..|.++|.+|++.|.++
T Consensus        12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~   45 (488)
T PRK03369         12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP   45 (488)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3579999999999999999999999999999753

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.08  E-value=0.25  Score=39.27  Aligned_cols=32  Identities=31%  Similarity=0.505  Sum_probs=28.7

Q ss_pred             EEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           20 ALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        20 vvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      |+|+|.|-.|...+..|.+.+.+|+++|+++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            79999999999999999998789999999864

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=92.07  E-value=0.19  Score=47.86  Aligned_cols=33  Identities=24%  Similarity=0.421  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHHHcC--CcEEEEccCCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAG--LSVAVLERRHV   51 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G--~~V~v~E~~~~   51 (531)
                      +|+|||+|-.|.+.|+.|+..|  .+|.|++++..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            6999999999999999999999  58999999654

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=92.05  E-value=0.19  Score=47.66  Aligned_cols=33  Identities=24%  Similarity=0.296  Sum_probs=30.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+|.|||.|..|.+-|..|+++|++|+++++++
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~   34 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP   34 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            379999999999999999999999999999864

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=92.01  E-value=0.19  Score=49.54  Aligned_cols=35  Identities=31%  Similarity=0.252  Sum_probs=31.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ...|+|||+|..|+.+|..|+..|.+|+++|.++.
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            46899999999999999999999999999998653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=91.94  E-value=0.24  Score=46.53  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=30.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      ..+|+|||+|-+|-++|+.|++.|. +|+|++|+.
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            3689999999999999999999997 799999964

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.89  E-value=0.2  Score=50.23  Aligned_cols=34  Identities=26%  Similarity=0.401  Sum_probs=31.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|.|||-|.+|+++|..|.++|++|+++|++.
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~   36 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL   36 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3579999999999999999999999999999764

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=91.88  E-value=0.27  Score=46.90  Aligned_cols=36  Identities=17%  Similarity=0.389  Sum_probs=31.8

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      ....+|+|||+|-.|.++|+.|+..|.  ++.|+|.+.
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~   41 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK   41 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            345799999999999999999999986  799999854

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=91.87  E-value=0.24  Score=44.71  Aligned_cols=34  Identities=24%  Similarity=0.463  Sum_probs=30.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC---cEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL---SVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~---~V~v~E~~~   50 (531)
                      ..+|+|+|+|-+|..+|..|.+.|.   +|.|++|+.
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            4689999999999999999999996   499999973

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=91.86  E-value=0.16  Score=54.41  Aligned_cols=35  Identities=20%  Similarity=0.207  Sum_probs=32.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      -.+|.|||||..|...|+.++..|++|+++|.++.
T Consensus       335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~  369 (737)
T TIGR02441       335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA  369 (737)
T ss_pred             ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence            35799999999999999999999999999999753

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.85  E-value=0.14  Score=47.83  Aligned_cols=34  Identities=41%  Similarity=0.432  Sum_probs=29.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      +-.||+|||||-+|+-||.-|+--=..|+|+|=.
T Consensus       353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~  386 (520)
T COG3634         353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA  386 (520)
T ss_pred             CCceEEEECCCcchHHHHHhHHhhhheeeeeecc
Confidence            3479999999999999999999655679999864

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=91.74  E-value=0.25  Score=46.73  Aligned_cols=34  Identities=35%  Similarity=0.453  Sum_probs=32.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|||.|..|..+|..|...|.+|++++++.
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5789999999999999999999999999999974

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=91.64  E-value=0.23  Score=49.91  Aligned_cols=35  Identities=37%  Similarity=0.489  Sum_probs=30.7

Q ss_pred             CcEEEECCChhHHHHHHHHHH--------------cCCcEEEEccCCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLAR--------------AGLSVAVLERRHVI   52 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~--------------~G~~V~v~E~~~~~   52 (531)
                      .+|+|||||..|+-.|..|++              .+.+|+|+|+.+.+
T Consensus       174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l  222 (424)
T PTZ00318        174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV  222 (424)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence            489999999999999999986              37889999998764

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=91.64  E-value=0.31  Score=40.32  Aligned_cols=33  Identities=27%  Similarity=0.451  Sum_probs=29.7

Q ss_pred             CcEEEECC-ChhHHHHHHHHHHcC--CcEEEEccCC
Q 048009           18 WDALVIGG-GHNGLTAAAYLARAG--LSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGa-GiaGL~aA~~L~~~G--~~V~v~E~~~   50 (531)
                      ++|+|||+ |..|.+.|+.|...+  .++.|+|.+.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            47999999 999999999999986  5699999974

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.60  E-value=0.28  Score=47.63  Aligned_cols=37  Identities=16%  Similarity=0.161  Sum_probs=32.7

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcC-------CcEEEEccCCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAG-------LSVAVLERRHV   51 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G-------~~V~v~E~~~~   51 (531)
                      ..+.+|.|||+|.-|-+.|..|++.|       ++|.++.++..
T Consensus         9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~   52 (365)
T PTZ00345          9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEI   52 (365)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEeccc
Confidence            34578999999999999999999997       79999988764

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=91.59  E-value=0.29  Score=48.14  Aligned_cols=42  Identities=14%  Similarity=0.153  Sum_probs=35.6

Q ss_pred             ccccccCCCCcEEEECC-ChhHHHHHHHHHHcCCcEEEEccCC
Q 048009            9 TTSALKEKKWDALVIGG-GHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus         9 ~~~~~~~~~~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +.+.+.+..++|+|.|| |..|...+..|.++|++|+.+.+..
T Consensus        13 ~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         13 REPYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            33445556789999999 9999999999999999999998753

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=91.57  E-value=0.2  Score=50.50  Aligned_cols=34  Identities=26%  Similarity=0.262  Sum_probs=31.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      .+|.|||.|..|.+.|..|+++|++|++++++..
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~   35 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE   35 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5799999999999999999999999999999754

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=91.42  E-value=0.28  Score=49.58  Aligned_cols=36  Identities=31%  Similarity=0.367  Sum_probs=32.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      +..+|+|||+|..|+.++..+...|.+|+++|.++.
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~  198 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  198 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            357899999999999999999999999999999753

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=91.33  E-value=0.27  Score=40.23  Aligned_cols=32  Identities=28%  Similarity=0.424  Sum_probs=28.0

Q ss_pred             EEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           20 ALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        20 vvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ++|+|+|..+.+.|..++..|++|+|+|-++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999999854

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=91.26  E-value=0.21  Score=47.39  Aligned_cols=34  Identities=35%  Similarity=0.486  Sum_probs=30.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ++|.|||+|..|...|+.|++.|++|+++=|.++
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            4799999999999999999999988998888664

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=91.22  E-value=0.31  Score=39.99  Aligned_cols=34  Identities=29%  Similarity=0.504  Sum_probs=30.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      +.+|+|||+|-.|...|..|++.|. +++|+|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            4689999999999999999999997 699999853

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=91.12  E-value=0.27  Score=46.68  Aligned_cols=33  Identities=21%  Similarity=0.233  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      +|.|||.|..|.+.|..|++.|++|.+++++..
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~   34 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD   34 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            699999999999999999999999999998753

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=91.11  E-value=0.17  Score=49.45  Aligned_cols=36  Identities=31%  Similarity=0.423  Sum_probs=30.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcC-------------CcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAG-------------LSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G-------------~~V~v~E~~~~~   52 (531)
                      ...++|||||..|.-.|.+|+++-             .+|+|+|+.+++
T Consensus       155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I  203 (405)
T COG1252         155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI  203 (405)
T ss_pred             eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence            357999999999999999998752             289999998864

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=91.09  E-value=0.27  Score=46.71  Aligned_cols=33  Identities=30%  Similarity=0.360  Sum_probs=30.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+|.|||.|..|...|..|++.|++|++++++.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~   35 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP   35 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            479999999999999999999999999999864

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=91.04  E-value=0.25  Score=50.35  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=31.5

Q ss_pred             CCcEEEECCChhHHH-HHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLT-AAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~-aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|.|||.|-+|++ +|..|.++|++|++.|....
T Consensus         7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            357999999999999 59999999999999998754

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=91.04  E-value=0.25  Score=46.96  Aligned_cols=31  Identities=35%  Similarity=0.445  Sum_probs=28.6

Q ss_pred             EEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           20 ALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        20 vvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      |+|||+|..|...|..|+.+|+ +|+++|.+.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            6899999999999999999877 999999974

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=91.03  E-value=0.19  Score=40.48  Aligned_cols=36  Identities=33%  Similarity=0.410  Sum_probs=28.6

Q ss_pred             cCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           14 KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        14 ~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      +....+|.|||+|-.|-+.|..|.+.|+.|.-+..+
T Consensus         7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr   42 (127)
T PF10727_consen    7 QAARLKIGIIGAGRVGTALARALARAGHEVVGVYSR   42 (127)
T ss_dssp             -----EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence            345799999999999999999999999998877654

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=90.93  E-value=0.3  Score=45.91  Aligned_cols=34  Identities=29%  Similarity=0.373  Sum_probs=31.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|||.|-.|.+.|..|+..|.+|++++|+.
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999965

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=90.86  E-value=0.27  Score=53.42  Aligned_cols=33  Identities=30%  Similarity=0.517  Sum_probs=30.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCc-EEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLS-VAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~-V~v~E~~~   50 (531)
                      .+|+|||||..|+-+|..|.+.|.+ |+|+++++
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            6899999999999999999999987 99999864

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=90.84  E-value=0.24  Score=53.01  Aligned_cols=35  Identities=26%  Similarity=0.313  Sum_probs=31.1

Q ss_pred             CCcEEEECCChhHHHHHHHHH-HcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLA-RAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~-~~G~~V~v~E~~~~   51 (531)
                      -.+|+|||+|..|..-|..++ +.|++|+++|.++.
T Consensus       304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~  339 (699)
T TIGR02440       304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ  339 (699)
T ss_pred             ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            357999999999999999998 58999999999753

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=90.83  E-value=0.3  Score=37.19  Aligned_cols=32  Identities=28%  Similarity=0.377  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHHHHcC---CcEEEE-ccCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAG---LSVAVL-ERRH   50 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G---~~V~v~-E~~~   50 (531)
                      +|.|||+|-.|.+.+..|.+.|   ++|.++ ++++
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~   36 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP   36 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence            5899999999999999999999   899966 8764

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.80  E-value=0.32  Score=50.09  Aligned_cols=34  Identities=35%  Similarity=0.478  Sum_probs=31.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|.|||.|.+|+++|..|.++|++|.+.|...
T Consensus         7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            3579999999999999999999999999999765

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=90.77  E-value=0.32  Score=46.45  Aligned_cols=33  Identities=27%  Similarity=0.297  Sum_probs=29.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      .+|+|||+|..|.+.|..|++.|+  +|+++++++
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            579999999999999999999985  899999864

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.76  E-value=0.33  Score=49.52  Aligned_cols=34  Identities=32%  Similarity=0.402  Sum_probs=31.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|.|+|.|.+|+++|..|.++|.+|++.|+..
T Consensus        15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   48 (473)
T PRK00141         15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE   48 (473)
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            3579999999999999999999999999999754

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.72  E-value=0.23  Score=53.20  Aligned_cols=34  Identities=32%  Similarity=0.322  Sum_probs=31.0

Q ss_pred             CCcEEEECCChhHHHHHHHHH-HcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLA-RAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~-~~G~~V~v~E~~~   50 (531)
                      -.+|+|||||..|..-|..++ ..|++|+++|.++
T Consensus       309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~  343 (708)
T PRK11154        309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP  343 (708)
T ss_pred             ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence            357999999999999999999 8899999999864

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=90.69  E-value=0.36  Score=47.38  Aligned_cols=35  Identities=26%  Similarity=0.406  Sum_probs=31.7

Q ss_pred             CCCcEEEEC-CChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIG-GGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIG-aGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...+|+||| .|..|-+.|..|+++|++|+++++++
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            347899999 89999999999999999999999854

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=90.64  E-value=0.28  Score=46.66  Aligned_cols=32  Identities=31%  Similarity=0.312  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +|.|||.|..|...|..|++.|++|+++++++
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~   33 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNP   33 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCH
Confidence            69999999999999999999999999999874

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=90.54  E-value=0.43  Score=42.05  Aligned_cols=33  Identities=42%  Similarity=0.597  Sum_probs=30.0

Q ss_pred             CCcEEEECC-ChhHHHHHHHHHHcCCcEEEEccC
Q 048009           17 KWDALVIGG-GHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        17 ~~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      ..+++|+|| |-.|..+|..|++.|.+|+++.|+
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            468999997 999999999999999999999875

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PTZ00117 malate dehydrogenase; Provisional

Probab=90.54  E-value=0.39  Score=45.97  Aligned_cols=35  Identities=23%  Similarity=0.282  Sum_probs=31.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcC-CcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAG-LSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G-~~V~v~E~~~   50 (531)
                      ...+|+|||+|..|.+.|+.|+..| .++.|+|.+.
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~   39 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK   39 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence            3579999999999999999999998 6899999865

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=90.52  E-value=0.42  Score=45.54  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=30.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      .+.+|+|||+|..|.++|+.|+..|.  ++.|+|.+.
T Consensus         2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            35799999999999999999998874  699999865

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=90.36  E-value=0.45  Score=40.98  Aligned_cols=32  Identities=25%  Similarity=0.394  Sum_probs=29.1

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCc-EEEEccCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLS-VAVLERRH   50 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~-V~v~E~~~   50 (531)
                      +|+|||+|-.|...|..|++.|.. ++|+|...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            589999999999999999999974 99999953

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.35  E-value=0.32  Score=49.32  Aligned_cols=34  Identities=35%  Similarity=0.615  Sum_probs=31.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      --|+|||.|-+|+++|..|.++|++|++.|....
T Consensus         7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~   40 (448)
T PRK03803          7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ   40 (448)
T ss_pred             CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC
Confidence            4599999999999999999999999999997653

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=90.34  E-value=0.42  Score=46.10  Aligned_cols=34  Identities=35%  Similarity=0.642  Sum_probs=31.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERR   49 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~   49 (531)
                      ...+|+|||+|--|..+|..|++.|. +++|+|..
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999998 89999995

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=90.30  E-value=0.48  Score=39.89  Aligned_cols=34  Identities=24%  Similarity=0.370  Sum_probs=30.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcC-CcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAG-LSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G-~~V~v~E~~~   50 (531)
                      ..+++|||+|..|.+.|..|++.| .+|++++++.
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            478999999999999999999996 8899998864

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=90.25  E-value=0.43  Score=45.99  Aligned_cols=35  Identities=29%  Similarity=0.542  Sum_probs=31.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      ...+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            45789999999999999999999997 799999964

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.18  E-value=0.44  Score=48.17  Aligned_cols=35  Identities=23%  Similarity=0.459  Sum_probs=31.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|.|||-|-+|++++..|+++|++|++.|....
T Consensus         6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~   40 (438)
T PRK03806          6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT   40 (438)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence            45799999999999999999999999999997653

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=90.10  E-value=0.49  Score=43.67  Aligned_cols=35  Identities=29%  Similarity=0.327  Sum_probs=31.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcC-CcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAG-LSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G-~~V~v~E~~~   50 (531)
                      ...+|+|||+|-.|..+|..|++.| -+++|+|...
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            4689999999999999999999999 5799999854

>TIGR00936 ahcY adenosylhomocysteinase

Probab=90.02  E-value=0.38  Score=47.29  Aligned_cols=35  Identities=26%  Similarity=0.180  Sum_probs=32.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ...|+|||.|..|..+|..|+..|.+|+++|.++.
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~  229 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI  229 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence            46899999999999999999999999999998763

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=90.01  E-value=0.45  Score=44.48  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=30.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+++|+|+|-+|.++|..|++.|.+|+|+.|+.
T Consensus       117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~  150 (270)
T TIGR00507       117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTV  150 (270)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4579999999999999999999999999998863

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PLN02602 lactate dehydrogenase

Probab=90.00  E-value=0.56  Score=45.34  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=29.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      .+|+|||+|-.|.++|+.|+..+.  ++.|+|.+.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~   72 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP   72 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            799999999999999999998874  699999864

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=89.98  E-value=0.46  Score=43.44  Aligned_cols=36  Identities=22%  Similarity=0.276  Sum_probs=33.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      +..+++|+|||..+...|..++..|++|+|+|-++.
T Consensus        99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964        99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            468999999999999999999999999999997654

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=89.97  E-value=0.4  Score=40.20  Aligned_cols=34  Identities=32%  Similarity=0.262  Sum_probs=28.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      -..++|+|=|-.|-.+|..|+..|.+|+|.|..+
T Consensus        23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            4679999999999999999999999999999976

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.86  E-value=0.33  Score=49.13  Aligned_cols=33  Identities=24%  Similarity=0.269  Sum_probs=29.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|+|.|.+|.+||..|.+ |.+|+|.|...
T Consensus         6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~   38 (454)
T PRK01368          6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLK   38 (454)
T ss_pred             CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCC
Confidence            4679999999999999999995 99999999653

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.86  E-value=0.34  Score=49.35  Aligned_cols=33  Identities=27%  Similarity=0.332  Sum_probs=30.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+|.|||.|.+|+++|..|.++|++|.+.|...
T Consensus        10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~   42 (460)
T PRK01390         10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNP   42 (460)
T ss_pred             CEEEEEeecHhHHHHHHHHHHCCCEEEEECCCh
Confidence            579999999999999999999999999999753

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=89.86  E-value=0.4  Score=46.21  Aligned_cols=32  Identities=25%  Similarity=0.276  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHHHcC--------CcEEEEccCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAG--------LSVAVLERRH   50 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G--------~~V~v~E~~~   50 (531)
                      +|+|||+|.-|.+.|..|+++|        ++|+++.++.
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~   40 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE   40 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc
Confidence            5899999999999999999999        9999998843

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=89.57  E-value=0.38  Score=48.90  Aligned_cols=34  Identities=24%  Similarity=0.415  Sum_probs=31.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ++|+|||+|..|...|..|.++|++|+++|+++.
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~   34 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE   34 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            3799999999999999999999999999999754

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=89.56  E-value=0.45  Score=47.10  Aligned_cols=35  Identities=29%  Similarity=0.222  Sum_probs=32.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ...|+|||.|..|..+|..|+..|.+|+++|.++.
T Consensus       212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~  246 (425)
T PRK05476        212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI  246 (425)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence            46799999999999999999999999999998753

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=89.56  E-value=0.23  Score=47.13  Aligned_cols=41  Identities=34%  Similarity=0.409  Sum_probs=37.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCcee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAA   56 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~   56 (531)
                      -..+.+|||||..||--+-.-.+.|-+||++|-.+.+||.+
T Consensus       210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m  250 (506)
T KOG1335|consen  210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM  250 (506)
T ss_pred             CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc
Confidence            35789999999999999999999999999999999998873

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=89.51  E-value=0.57  Score=44.22  Aligned_cols=34  Identities=18%  Similarity=0.240  Sum_probs=30.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCc-EEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLS-VAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~-V~v~E~~~   50 (531)
                      ...++|+|||=+|.++|+.|++.|.+ |+|+.|+.
T Consensus       126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            35799999999999999999999986 99999864

>PLN02256 arogenate dehydrogenase

Probab=89.40  E-value=0.53  Score=44.66  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=31.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...+|+|||.|..|-+.|..|.+.|++|.+++++.
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~   69 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD   69 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence            45789999999999999999999999999999874

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=89.34  E-value=0.64  Score=38.60  Aligned_cols=32  Identities=28%  Similarity=0.463  Sum_probs=29.3

Q ss_pred             cEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      +|+|||+|-.|...|..|++.|. +++|+|...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999997 699999864

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=89.29  E-value=0.66  Score=41.14  Aligned_cols=35  Identities=34%  Similarity=0.547  Sum_probs=31.9

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERR   49 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~   49 (531)
                      -...+|+|||.|-.|..+|..|++.|. +++|+|..
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            456899999999999999999999996 79999985

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.29  E-value=0.45  Score=47.22  Aligned_cols=31  Identities=16%  Similarity=0.220  Sum_probs=28.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      ++|.|||.|-+|+++|..|. +|.+|++.|..
T Consensus         1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~   31 (401)
T PRK03815          1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDK   31 (401)
T ss_pred             CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence            36899999999999999999 99999999965

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	531
4dgk_A	501	Crystal Structure Of Phytoene Desaturase Crti From		5e-17
3rha_A	482	The Crystal Structure Of Oxidoreductase From Arthro		2e-04
2cvj_A	180	Crystal Structure Of Thioredoxin Reductase-Related		7e-04
2vvm_A	495	The Structure Of Mao-N-D5, A Variant Of Monoamine O		8e-04
2vvl_A	495	The Structure Of Mao-N-D3, A Variant Of Monoamine O		8e-04
2vvl_G	495	The Structure Of Mao-N-D3, A Variant Of Monoamine O		8e-04

>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From Pantoea Ananatis Length = 501

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 129/536 (24%), Positives = 213/536 (39%), Gaps = 81/536 (15%)
Query: 22  VIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSL 81
           VIG G  GL  A  L  AG+ V +LE+R   GG A   E   GF F     +  +  PS 
Sbjct: 6   VIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYE-DQGFTFDAGPTV--ITDPSA 62
Query: 82  IK-CGTRIGETWNEVVEAKSII-VYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQ 139
           I+      G+   E VE   +   Y +  +    F+      +D+    L      ++ +
Sbjct: 63  IEELFALAGKQLKEYVELLPVTPFYRLCWESGKVFN------YDNDQTRLEAQIQQFNPR 116
Query: 140 FKNKIRNSAFWAHCLRRA--ISLGQKDLVEFVDLL-LSPASKVLNKWFETDVLKATLATD 196
                R    ++  + +   + LG    + F D+L  +P    L  W       A+   D
Sbjct: 117 DVEGYRQFLDYSRAVFKEGYLKLGTVPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIED 176
Query: 197 AVIGTMSSVHT---------PGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAA 247
             +    S H+           S Y L+H +  E     G+W +  GG G++   +    
Sbjct: 177 EHLRQAFSFHSLLVGGNPFATSSIYTLIHALEREW----GVW-FPRGGTGALVQGMIKLF 231
Query: 248 REAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV---PGN 304
           ++ G  +V  A VS  M     ++  V L DG +  +  V SNA    T+ DL+   P  
Sbjct: 232 QDLGGEVVLNARVSH-METTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPAA 290
Query: 305 ILPDDFILSIKHSD-YSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEE 363
           +   + + + + S+        +N   D+L     C       GP++        E ++E
Sbjct: 291 VKQSNKLQTKRMSNSLFVLYFGLNHHHDQLAHHTVCF------GPRY-------RELIDE 337
Query: 364 I--HSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWM-- 419
           I  H    E  +        + +  P V D +++P G     +         ++  W   
Sbjct: 338 IFNHDGLAEDFS--------LYLHAPCVTDSSLAPEGCGSYYVLAPVPHLGTANLDWTVE 389
Query: 420 DPAYRDSFANRCFSLIDE-YAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSL 478
            P  RD    R F+ +++ Y PG  S ++ + M TP D   ++     N +HG     S 
Sbjct: 390 GPKLRD----RIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQL-----NAYHG-----SA 435
Query: 479 FLMRPVKGWSNYRTP------LQGLYMCGSGTHPGGGVMGAPG--RNAAGIVLQDL 526
           F + PV   S +  P      +  LY+ G+GTHPG G+ G  G  +  AG++L+DL
Sbjct: 436 FSVEPVLTQSAWFRPHNRDKTITNLYLVGAGTHPGAGIPGVIGSAKATAGLMLEDL 491

>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter Aurescens Length = 482

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL 61
          D +++G G +GLTAA  L +AGLSVAVLE R  +GG   T+ +
Sbjct: 9  DVVIVGAGPSGLTAARELKKAGLSVAVLEARDRVGGRTWTDTI 51

>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein Ttha0370 From Thermus Thermophilus Hb8 Length = 180

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 25/30 (83%)
Query: 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLE 47
          WD +V+GGG +GL+AA +LARAGL V VL+
Sbjct: 2  WDVIVVGGGPSGLSAALFLARAGLKVLVLD 31

>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase From Aspergillus Niger. Length = 495

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 14 KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
          K+  WD +VIGGG+ GLTA   L  AG    +LE R  IGG
Sbjct: 36 KDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGG 76

>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase From Aspergillus Niger. Length = 495

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 14 KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
          K+  WD +VIGGG+ GLTA   L  AG    +LE R  IGG
Sbjct: 36 KDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGG 76

>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase From Aspergillus Niger Length = 495

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 14 KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
          K+  WD +VIGGG+ GLTA   L  AG    +LE R  IGG
Sbjct: 36 KDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGG 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	531
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	1e-49
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	6e-43
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	2e-20
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	9e-16
4fk1_A	304	Putative thioredoxin reductase; structural genomic	1e-10
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	1e-10
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	2e-10
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	2e-10
3atr_A	453	Conserved archaeal protein; saturating double bond	1e-09
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	3e-09
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	4e-09
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	4e-09
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	6e-09
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	7e-09
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	7e-09
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	8e-09
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	8e-09
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	2e-08
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	2e-08
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	2e-08
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	3e-08
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	3e-08
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	4e-08
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	4e-08
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	6e-08
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	8e-08
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	1e-07
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	1e-07
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	2e-07
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	2e-07
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	2e-07
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	3e-07
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	3e-07
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	3e-07
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	5e-07
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	6e-07
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	6e-07
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	6e-07
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	7e-07
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	8e-07
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	9e-07
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	1e-06
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	1e-06
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	1e-06
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	2e-06
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	2e-06
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	2e-06
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	2e-06
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	2e-06
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	3e-06
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	3e-06
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	4e-06
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	4e-06
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	4e-06
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	5e-06
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	5e-06
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	5e-06
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	9e-06
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	9e-06
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	1e-05
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	1e-05
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	1e-05
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	1e-05
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	1e-05
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	2e-05
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	2e-05
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	2e-05
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	2e-05
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	2e-05
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	3e-05
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	3e-05
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	3e-05
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	3e-05
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	3e-05
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	5e-05
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	5e-05
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	5e-05
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	6e-05
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	6e-05
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	7e-05
3r9u_A	315	Thioredoxin reductase; structural genomics, center	8e-05
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	1e-04
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	1e-04
3dme_A	369	Conserved exported protein; structural genomics, P	1e-04
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	2e-04
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	2e-04
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	2e-04
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	2e-04
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	3e-04
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	5e-04
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	5e-04
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	5e-04
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	6e-04
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	7e-04
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	7e-04
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	7e-04
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	9e-04

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score =  175 bits (445), Expect = 1e-49
 Identities = 91/506 (17%), Positives = 153/506 (30%), Gaps = 105/506 (20%)

Query: 19  DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLR 78
             +VIG G  GL +AA L++AG  V V ER  + GG         GF+ S          
Sbjct: 2   KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLS-YKGFQLSSG-------- 52

Query: 79  PSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPP---ELLQGSSS 135
              +      G                     L +    V+++          L +G+  
Sbjct: 53  AFHM-LPNGPGG---------------PLACFLKEVEASVNIVRSEMTTVRVPLKKGNPD 96

Query: 136 YSHQFKNKIRNS--AFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATL 193
           Y   FK+   N   +  ++  R  I+L      +      S     +      + L    
Sbjct: 97  YVKGFKDISFNDFPSLLSYKDRMKIALLIVSTRKNRPSGSS-LQAWIKSQVSDEWLIKFA 155

Query: 194 A--TDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAG 251
                  +   S        + ++ ++        G     EGG   +  A+ +     G
Sbjct: 156 DSFCGWALSLKSDEVPVEEVFEIIENM----YRFGGTG-IPEGGCKGIIDALETVISANG 210

Query: 252 AHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNI--LPDD 309
             I T  EVS+++I + G+  G+ +AD     + +V+SN     T +             
Sbjct: 211 GKIHTGQEVSKILIEN-GKAAGI-IADDRIHDADLVISNLGHAATAVLCSEALSKEADAA 268

Query: 310 FILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQ 369
           +   +     S+G  KI LA D+             P   H   + +             
Sbjct: 269 YFKMVGTLQPSAG-IKICLAADE-------------PLVGH-TGVLLT------------ 301

Query: 370 EAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFAN 429
                 P  R I  +   +  D  ++PPG H+      +    P +         +S   
Sbjct: 302 ------PYTRRINGVNEVTQADPELAPPGKHLTMC---HQYVAPENVKN-----LESEIE 347

Query: 430 RCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSN 489
                + E  PG    ++         L +        +   A G        P      
Sbjct: 348 MGLEDLKEIFPGKRYEVL---------LIQSYH-DEWPVNRAASGT------DP-----G 386

Query: 490 YRTPLQGLYMCGSGTHPGGGVMGAPG 515
             TP  GLY+ G G    GG+    G
Sbjct: 387 NETPFSGLYVVGDGAKGKGGI-EVEG 411

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score =  157 bits (398), Expect = 6e-43
 Identities = 86/502 (17%), Positives = 148/502 (29%), Gaps = 117/502 (23%)

Query: 19  DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRC-SYL-QSL 76
            A+V+G G  GL A A+LAR G  + VLE+  +IGG         GF+ S    ++    
Sbjct: 2   RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLP-YKGFQLSTGALHMIPHG 60

Query: 77  LRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSY 136
               L      +G    E+V +       ++E ++  + +    L               
Sbjct: 61  EDGPLAHLLRILGAKV-EIVNSNPKGKI-LWEGKIFHYRESWKFLS-------------- 104

Query: 137 SHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLAT- 195
               K K +     A      I + +    E       PA + + +    +    ++   
Sbjct: 105 ---VKEKAKALKLLA-----EIRMNKLPKEEI------PADEWIKEKIGENEFLLSVLES 150

Query: 196 --DAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAH 253
                     S  T       +   +       G    + GG  +V   +     E    
Sbjct: 151 FAGWADSVSLSDLTALELAKEIRAALRW----GGPG-LIRGGCKAVIDELERIIMENKGK 205

Query: 254 IVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILS 313
           I+TR EV ++ I +      V   D  +    + +SN    +T   L+  +    D++  
Sbjct: 206 ILTRKEVVEINIEE----KKVYTRDNEEYSFDVAISNVGVRETV-KLIGRDYFDRDYLKQ 260

Query: 314 IKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVN 373
           +   + S G  K NLAV   P+     +  P                             
Sbjct: 261 VDSIEPSEG-IKFNLAVPGEPRIGNTIVFTPG---------------------------- 291

Query: 374 GLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFS 433
                  I     PS LDK+++  G     L + +   K  +                  
Sbjct: 292 -----LMINGFNEPSALDKSLAREGYT---LIMAHMALKNGNVKK--------------- 328

Query: 434 LIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTP 493
            I++                  +L        G      +  D   + R   G      P
Sbjct: 329 AIEKGW---------------EELLEIFP--EGEPLLAQVYRDGNPVNRTRAGLHI-EWP 370

Query: 494 LQGLYMCGSGTHPGGGVMGAPG 515
           L  + + G G  P GG +   G
Sbjct: 371 LNEVLVVGDGYRPPGG-IEVDG 391

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score = 93.4 bits (231), Expect = 2e-20
 Identities = 31/311 (9%), Positives = 95/311 (30%), Gaps = 26/311 (8%)

Query: 13  LKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSY 72
            + + +D +++G G      +  L+  G  + VL+R    GG   +  L   +   +   
Sbjct: 16  FQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKE 75

Query: 73  LQSLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDL-----------L 121
                          +   +   +     +V  + + ++  + +++ +            
Sbjct: 76  NIPSKYGENRHWNVDLIPKF---ILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKG 132

Query: 122 FDSSPPELLQGSSSYSHQFKN-------KIRNSAFWAHCLRRAISLGQKDLVEFVDLLLS 174
           F +S   + +  ++      +       K R   F+ +         +++  + +D    
Sbjct: 133 FLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVSE--WDANKRNTWDNLDPYKL 190

Query: 175 PASKVLNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLL---HHVMGETDGNPGIWSY 231
              ++   +    +    L     +          +   L     ++   +      + Y
Sbjct: 191 TMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAFGKSPFIY 250

Query: 232 VEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNA 291
              G+G +           G   +    V   + +D  +V G++ +DG   +   V+ + 
Sbjct: 251 PLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDP 310

Query: 292 TPYKTFMDLVP 302
           +      + + 
Sbjct: 311 SYVMHLKNKIK 321

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score = 78.8 bits (193), Expect = 9e-16
 Identities = 38/291 (13%), Positives = 91/291 (31%), Gaps = 20/291 (6%)

Query: 15  EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQ 74
           ++++D +V+G G      +  ++  G  V  ++R    GG + +   +            
Sbjct: 4   DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEG 63

Query: 75  SLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQF--VDLLFDSSPPELLQG 132
                   +      +   + + A   +V  +   ++ ++  F  V+  F     ++ + 
Sbjct: 64  PPETMGRGRD--WNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKV 121

Query: 133 SSSYSHQFKN-------KIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFE 185
            S+ +    +       K R   F                 E VD   +    V  K+  
Sbjct: 122 PSTETEALASNLMGMFEKRRFRKFLVFV--ANFDENDPKTFEGVDPQNTSMRDVYRKFDL 179

Query: 186 TDVLKA----TLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSM 241
              +       LA       +          + L+       G    + Y   G+G +  
Sbjct: 180 GQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSP-YLYPLYGLGELPQ 238

Query: 242 AIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNAT 292
                +   G   +    V   +I ++G+V GV+ ++G       ++ + +
Sbjct: 239 GFARLSAIYGGTYMLNKPVDD-IIMENGKVVGVK-SEGEVARCKQLICDPS 287

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGF 65
          K  D  VIG G  GL A+  L RA   +A+ +         VT+    GF
Sbjct: 5  KYIDCAVIGAGPAGLNASLVLGRARKQIALFDNN--TNRNRVTQN-SHGF 51

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 63.0 bits (153), Expect = 1e-10
 Identities = 55/352 (15%), Positives = 107/352 (30%), Gaps = 27/352 (7%)

Query: 7   TSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFK 66
           T+     K+  WD +VIGGG+ GLTA   L  AG    +LE R  IGG + +  +  G+ 
Sbjct: 29  TNIEDTDKDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNI-DGYP 87

Query: 67  F----SRCSYLQSLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLF 122
           +    +   + QS +   + +    +    +        + +          +       
Sbjct: 88  YEMGGTWVHWHQSHVWREITRYK--MHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAE 145

Query: 123 DSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLL---LSPASKV 179
           D      L   ++        +         +       +    E +D +   LS   + 
Sbjct: 146 DELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFRKYDEMSYSERIDQIRDELSLNERS 205

Query: 180 LNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSV 239
             + F       TL   +    +      G  Y        +   +  +    + G  + 
Sbjct: 206 SLEAFILLCSGGTLENSSFGEFLHWWAMSGYTY--------QGCMDCLMSYKFKDGQSAF 257

Query: 240 SMAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKT-- 296
           +      A   G    V    V    + +      V   DG +  +  V+    P     
Sbjct: 258 ARRFWEEAAGTGRLGYVFGCPVRS--VVNERDAARVTARDGREFVAKRVVC-TIPLNVLS 314

Query: 297 FMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGP 348
            +   P   L  + I +++    S   TK++  VD         +++P    
Sbjct: 315 TIQFSPA--LSTERISAMQAGHVSM-CTKVHAEVDNKDMRSWTGIAYPFNKL 363

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453

 Score = 62.2 bits (150), Expect = 2e-10
 Identities = 36/291 (12%), Positives = 94/291 (32%), Gaps = 15/291 (5%)

Query: 15  EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFK-FSRCSYL 73
           +  +D +V+G G      +  L+  G  V  ++++   GG A +  L   ++ F +    
Sbjct: 9   DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPIS 68

Query: 74  QSLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQF--VDLLFDSSPPELLQ 131
           +        K      +   + + A   +   +    + ++  F  V   +     ++ +
Sbjct: 69  KEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYK 128

Query: 132 GSSSYSHQFKNKI-----RNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFET 186
             ++      + +     +           +         + +DL  +   +V  K+   
Sbjct: 129 VPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLG 188

Query: 187 DVLKA----TLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMA 242
           +  K      +A       +     P    +LL+       G      Y   G+G +   
Sbjct: 189 NSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYL-YPMYGLGELPQG 247

Query: 243 IGSAAREAGAHIVTRAEVSQLMI-NDSGRVNGVQLADGAQVHSSIVLSNAT 292
               +   G   +    + +++   D+G+  GV         + +V+++ T
Sbjct: 248 FARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGV-KTKLGTFKAPLVIADPT 297

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 5  SFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELI-- 62
          +  + +S  KE+ +D +++G G  G +AA Y AR+G SVA+L++  V GG      L+  
Sbjct: 4  NLHAVSSEEKERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKA-VAGGLTAEAPLVEN 62

Query: 63 -PGFK 66
            GFK
Sbjct: 63 YLGFK 67

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 10/62 (16%)

Query: 14 KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR-------HVIGGA---AVTEELIP 63
          KE K+D L+IGGG  G +AA  L+R GL + +++ +          G A   A  ++L  
Sbjct: 3  KELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGM 62

Query: 64 GF 65
           +
Sbjct: 63 PY 64

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 57.2 bits (139), Expect = 4e-09
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL--IPGF 65
          K+D ++IGG + GL+AA  L RA  ++ +++                  G 
Sbjct: 2  KFDVIIIGGSYAGLSAALQLGRARKNILLVDA--GERRNRFASHSHGFLGQ 50

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)

Query: 14 KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLER----RHVIGGA 55
          + +K D LVIG G  G  AA+ + ++G  V ++E+    R VIG +
Sbjct: 2  QREKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGES 47

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 57.6 bits (139), Expect = 6e-09
 Identities = 60/333 (18%), Positives = 115/333 (34%), Gaps = 47/333 (14%)

Query: 16  KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQS 75
                +++G G  GL+AA  LA AG  V VLE     GG   T      ++     +  +
Sbjct: 32  NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRT------YRNEEAGWYAN 85

Query: 76  LLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLD-KFSQFVDLLFDSSPPELLQGSS 134
           L          R+ E    V E      Y     + D + ++F     + +    ++   
Sbjct: 86  L-------GPMRLPEKHRIVRE------YI---RKFDLRLNEFSQ--ENDNAWYFIKNIR 127

Query: 135 SYSHQFK---NKIRNSAFWAHCLRRAISLGQKDLVEFVDLL-LSPASKVLNKW----FET 186
               + K     ++     +   + A  L ++ L + V+ L  +  S +LNK+     + 
Sbjct: 128 KKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKE 187

Query: 187 DVLKATLATDAVIGTMSSVHTPGSGYVLL---HHVMGETDGNPGIWSYVEGGMGSVSMAI 243
            ++K    +   +  +  +    SGY +         +       +  +  GM  +  A+
Sbjct: 188 YLIKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAM 247

Query: 244 GSAAREAGAHIVTRAEVSQLMINDSG--RVNGVQLADGAQVHSSIVLSNATPYKT--FMD 299
               R+    +   A+V ++  ND     V      +   V +  V+   T  +    + 
Sbjct: 248 ---YRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIV-CTTSRAVRLIK 303

Query: 300 LVPGNILPDDFILSIKHSDYSSGTTKINLAVDK 332
             P   L      +++   Y SG TKI L    
Sbjct: 304 FNPP--LLPKKAHALRSVHYRSG-TKIFLTCTT 333

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score = 56.4 bits (137), Expect = 7e-09
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 8  STTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELI---PG 64
           TTS    +K+D +++G G     AA Y AR  L   V+      GG      ++    G
Sbjct: 6  RTTSVKPGEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGE--TPGGQLTEAGIVDDYLG 63

Query: 65 FK 66
            
Sbjct: 64 LI 65

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 57.3 bits (138), Expect = 7e-09
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 9/55 (16%)

Query: 14 KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLER----RHVIGGAAVTEELIPG 64
          + + +D +VIGGG  G T A+++A  G  V +LER    RH IG     E L+P 
Sbjct: 4  RPEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIG-----ESLLPA 53

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 56.7 bits (137), Expect = 8e-09
 Identities = 59/320 (18%), Positives = 109/320 (34%), Gaps = 32/320 (10%)

Query: 18  WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL--IPGFKFSR-CSYLQ 74
           +DA+V+GGG +GL AA  L  AG  V +LE    +GG A + E   +PG +     +YL 
Sbjct: 2   YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLH 61

Query: 75  SLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSS 134
               P L     R G      +   +   +  F  +L   +         S    ++ ++
Sbjct: 62  RKHHPRLAAELDRYG------IPTAAASEFTSFRHRLGPTAVDQAFPIPGSEAVAVEAAT 115

Query: 135 SYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLA 194
               +  ++I       +     + +   + V+ +D  L P S+     +  ++L     
Sbjct: 116 YTLLRDAHRIDLEKGLENQDLEDLDIPLNEYVDKLD--LPPVSRQFLLAWAWNMLGQPAD 173

Query: 195 TDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHI 254
             + +  +  V                      +      G   +  A+     +    I
Sbjct: 174 QASALWMLQLVAAHHYSI---------LGVVLSLDEVFSNGSADLVDAMS----QEIPEI 220

Query: 255 VTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKT--FMDLVPGNILPDDFIL 312
             +  V+ +  +       V + DG    +  V+  ATP  T   +   P   LP+    
Sbjct: 221 RLQTVVTGIDQSGDVVN--VTVKDGHAFQAHSVIV-ATPMNTWRRIVFTPA--LPERRRS 275

Query: 313 SIKHSDYSSGTTKINLAVDK 332
            I+      G  KI + V  
Sbjct: 276 VIEEGHGGQG-LKILIHVRG 294

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score = 56.9 bits (138), Expect = 8e-09
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 14  KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELI---PGFK 66
           K   +D L++G G  G  AA Y AR G+   ++  R   GG  +    I       
Sbjct: 209 KRDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER--FGGQVLDTVDIENYISVP 262

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 55.5 bits (133), Expect = 2e-08
 Identities = 19/61 (31%), Positives = 28/61 (45%)

Query: 5  SFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPG 64
             +T    + K +D L++G G  G   A  LA +G  V +++RR  IGG A       G
Sbjct: 17 QTNTTNEQQESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAG 76

Query: 65 F 65
           
Sbjct: 77 V 77

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 67/322 (20%), Positives = 108/322 (33%), Gaps = 33/322 (10%)

Query: 19  DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKF----SRCSYLQ 74
           D  ++G G +GL AA  L +AGLSVAV+E R  +GG   T+ +  G          S  Q
Sbjct: 7   DVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTI-DGAVLEIGGQWVSPDQ 65

Query: 75  SLLRPSLIKCGTRIG-ETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGS 133
           + L  SL+     +G +T+    E +S+ + +  E        F     + +  + +   
Sbjct: 66  TALI-SLLD---ELGLKTFERYREGESVYISSAGERTRYTGDSF---PTNETTKKEMDRL 118

Query: 134 SSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLS-PASKVLNKWFETDVLKAT 192
                    +I     WAH L R +     D V F   L++              +    
Sbjct: 119 IDEMDDLAAQIGAEEPWAHPLARDL-----DTVSFKQWLINQSDDAEARDNIGLFIAGGM 173

Query: 193 LATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGA 252
           L   A      S                  D +  +   V GGM  VS+ +   A   G 
Sbjct: 174 LTKPA---HSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRM---AEALGD 227

Query: 253 HIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKT--FMDLVPGNILPDDF 310
            +   A V    +  +     V      +V +S V+  A P      +   P   LP   
Sbjct: 228 DVFLNAPVRT--VKWNESGATVLADGDIRVEASRVIL-AVPPNLYSRISYDPP--LPRRQ 282

Query: 311 ILSIKHSDYSSGTTKINLAVDK 332
               +H        K++   + 
Sbjct: 283 HQMHQHQSLGL-VIKVHAVYET 303

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score = 54.8 bits (133), Expect = 2e-08
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELI---PGFK 66
          +D L++G G  G  AA Y AR G+   ++  R   GG  +    I       
Sbjct: 2  YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDTVDIENYISVP 51

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 3  RRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLER----RHVIG 53
            S           +    +IGGG  G  A   L + G  V + ER    R+ +G
Sbjct: 9  HHSSGLVPRGSHMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVG 63

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* Length = 180

 Score = 52.5 bits (127), Expect = 3e-08
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 6/51 (11%)

Query: 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELI---PGF 65
          WD +V+GGG +GL+AA +LARAGL V VL+              +   PG 
Sbjct: 2  WDVIVVGGGPSGLSAALFLARAGLKVLVLDG---GRSKVKGVSRVPNYPGL 49

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 63/326 (19%), Positives = 108/326 (33%), Gaps = 34/326 (10%)

Query: 16  KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKF----SRCS 71
            K D +V+GGG +G+ AA  L  +GL+V VLE R  +GG   T             S   
Sbjct: 3   NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVG 62

Query: 72  YLQSLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQ 131
             Q+ +   L K    +G    +V E + +I +   + +   F      +++        
Sbjct: 63  PTQNRILR-LAK---ELGLETYKVNEVERLIHH--VKGKSYPFRGPFPPVWNPITYLDHN 116

Query: 132 GSSSYSHQFKNKIRNSAFWAHCLRRA---ISLGQKDLVEFVDLLLSPASKVLNKWFETDV 188
                      +I + A W   L      +++ +        L  + ++K L   F    
Sbjct: 117 NFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKE----LLDKLCWTESAKQLATLFVNLC 172

Query: 189 LKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAR 248
           + A     + +  +  V   G        ++  T+G  G      GG G VS  I     
Sbjct: 173 VTAETHEVSALWFLWYVKQCGG----TTRIISTTNG--GQERKFVGGSGQVSERI---MD 223

Query: 249 EAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKT--FMDLVPGNIL 306
             G  +     V    I+ +     V+  +     +  V+S A P      +   P   L
Sbjct: 224 LLGDRVKLERPVIY--IDQTRENVLVETLNHEMYEAKYVIS-AIPPTLGMKIHFNPP--L 278

Query: 307 PDDFILSIKHSDYSSGTTKINLAVDK 332
           P      I      S   K  +   +
Sbjct: 279 PMMRNQMITRVPLGS-VIKCIVYYKE 303

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 54.0 bits (129), Expect = 4e-08
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 1   MWRRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLA--RAGLSVAVLERRHVIGGA 55
           M  R F       K    D +++G G +GL+AA  +A  R  L V ++E     GG 
Sbjct: 52  MTSRYFKDL---DKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG 105

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 54.1 bits (129), Expect = 6e-08
 Identities = 56/413 (13%), Positives = 112/413 (27%), Gaps = 49/413 (11%)

Query: 9   TTSALKEKKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRHVIGGAAVTEELIPGFKF 67
             +  +      ++IG G  GL AA  L   G  +  + E     GG + +     GF +
Sbjct: 1   AIAMAELLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTW 60

Query: 68  SRCSYLQSLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPP 127
               ++                + WN  ++ +S +            +    L       
Sbjct: 61  DLGGHVIFSHYQYFDDVMDWAVQGWNV-LQRESWVWVRGRWVPYPFQNNIHRLPEQDRKR 119

Query: 128 ELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETD 187
            L +   S++  +     N        R+    G+       D+ + P +    K +   
Sbjct: 120 CLDELVRSHARTYTEPPNNFEESF--TRQ---FGE----GIADIFMRPYNF---KVWAVP 167

Query: 188 VLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGG-MGSVSMAIGSA 246
                ++T+ V   ++ V        +  +      G    + + + G  G +  AI   
Sbjct: 168 --PCLMSTEWVEERVAPVDLERIRRNIQENRDDLGWGPNATFRFPQRGGTGIIYQAIKEK 225

Query: 247 AREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNIL 306
                    +  +   +  +       +  ++G  V    ++S                 
Sbjct: 226 LPSEKLTFNSGFQAIAIDADA----KTITFSNGEVVSYDYLISTVPFDNLLRMTKGTGFK 281

Query: 307 PDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHS 366
             D   +I      S T  I + V   P         P                      
Sbjct: 282 GYDEWPAIADKMVYSSTNVIGIGVKGTPP--------PHLKTACWLYFP----------- 322

Query: 367 ACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWM 419
                        P    T+ S   K   P G+  + L +  + YKP + S +
Sbjct: 323 ---------EDTSPFYRATVFSNYSKYNVPEGHWSLMLEVSESKYKPVNHSTL 366

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 53.7 bits (129), Expect = 8e-08
 Identities = 44/316 (13%), Positives = 88/316 (27%), Gaps = 43/316 (13%)

Query: 19  DALVIGGGHNGLTAAAYLARAGL-SVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLL 77
              +IG G  GL A  YL +AG     +LER   +GG   +     G ++          
Sbjct: 8   RIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPN-YHGRRYEM-------- 58

Query: 78  RPSLIKCGTRIGETWNEVVE------AKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQ 131
                        +++ + E       K        E   +    +V        P+++ 
Sbjct: 59  ------GAIMGVPSYDTIQEIMDRTGDKVDGPKLRREFLHEDGEIYVPEKDPVRGPQVMA 112

Query: 132 GSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLL-LSPASKVLNKWFETDVLK 190
                      K +      H   +          EF+ L     A  +    F      
Sbjct: 113 AVQKLGQLLATKYQGYDANGH-YNKVHEDLMLPFDEFLALNGCEAARDLWINPFTAFGYG 171

Query: 191 ATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREA 250
                 A    +         Y+    +M    G+         G  ++   +       
Sbjct: 172 HFDNVPAA--YVLK-------YLDFVTMMSFAKGD---LWTWADGTQAMFEHL---NATL 216

Query: 251 GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDF 310
                   +++++   + G+V+ +   D  +    +VL    P + F+D    +    ++
Sbjct: 217 EHPAERNVDITRI-TREDGKVH-IHTTDWDRESDVLVL--TVPLEKFLDYSDADDDEREY 272

Query: 311 ILSIKHSDYSSGTTKI 326
              I H  Y      +
Sbjct: 273 FSKIIHQQYMVDACLV 288

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 53.6 bits (128), Expect = 1e-07
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 7  TSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFK 66
          ++        K    VIG G +GL AA  L   GL+V V E     GG   +     G  
Sbjct: 4  SAGEDKHSSAK-RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS-QDGLI 61

Query: 67 F 67
          +
Sbjct: 62 W 62

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 1  MWRRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGA 55
          M R        A+K + ++A+VIGGG  G   A YLA+   + A+ E   + G  
Sbjct: 8  MAR------IRAMK-RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRT 55

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 4  RSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIP 63
                    +    +  V+GGG +GL  A +L   G    +LE    +GGA  T   + 
Sbjct: 3  HHHHHHHHMPRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHA-LA 61

Query: 64 GFKF 67
          G+  
Sbjct: 62 GYLV 65

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 52.4 bits (125), Expect = 2e-07
 Identities = 54/358 (15%), Positives = 100/358 (27%), Gaps = 40/358 (11%)

Query: 22  VIGGGHNGLTAAAYLARAGLS--VAVLERRHVIGGAAVTEELIPGFKFSR--CSYLQSLL 77
           V+GGG +GL A+ +L+RA     V ++E    +GG   +     G  F         +  
Sbjct: 7   VLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGA 66

Query: 78  RPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVD---LLFDSSPPELLQGSS 134
                  G R     +E+     ++              +V        +    LL+ S 
Sbjct: 67  L------GARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSP 120

Query: 135 SYSHQFKNKIRNSAFWAHCLRRAISLGQKDL----VEFVDLLLSPASKVLNKWFETDV-- 188
            +S                     ++          E   L +     +    F  +   
Sbjct: 121 PFSKPLFWAGLRELTKPRGKEPDETVHSFAQRRLGPEVASLAMDS---LCRGVFAGNSRE 177

Query: 189 ---------LKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSV 239
                    L     T   I     +    +       +          WS + GG+  +
Sbjct: 178 LSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWS-LRGGLEML 236

Query: 240 SMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMD 299
             A+ +     G  ++    V  L +   GR         + + +  V+S A P     +
Sbjct: 237 PQALETHLTSRGVSVLRGQPVCGLSLQAEGRW--KVSLRDSSLEADHVIS-AIPASVLSE 293

Query: 300 LVPGNILPDDFILSIKHSDYSSGTTKINLAVDK--LPQFQCCKLSHPDPGPQHVGTIH 355
           L+P          ++      S    +NL      LP      L      P  +G ++
Sbjct: 294 LLPA--EAAPLARALSAITAVS-VAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIVY 348

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 7   TSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
            +  ++      D +V+G G  G +AA     +G  V ++E+  VIGG
Sbjct: 116 QAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG 163

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 52.0 bits (124), Expect = 3e-07
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEE 60
          K    L++G G +G      LA  G  V ++++R  IGG +    
Sbjct: 2  KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDAR 46

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAA 56
          K+D ++IG G  G  A  Y  RAGL+V + +  H+     
Sbjct: 2  KYDLIIIGSGSVGAAAGYYATRAGLNVLMTD-AHMPPHQH 40

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 5   SFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57
                 +A   +    LV+G G  G  A+    +AG +V ++++    GG ++
Sbjct: 109 KIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSM 161

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 50.5 bits (120), Expect = 5e-07
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 1  MWRRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLAR-AGLSVAVLERRHVIGGAA 56
          M RR  T   +  +    D +V+G G  GL+AA  +++   + VA++E+    GG A
Sbjct: 26 MTRRYMTDMITYAE---TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA 79

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 51.0 bits (121), Expect = 6e-07
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 14 KEKKWDALVIGGGHNGLTAAAYLARA-GLSVAVLERRHVIGGAAVTEELIPGFKF 67
           +   D LVIG G  GL AA  L +  G S  +++     GG A T+    GF +
Sbjct: 7  PDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLY 61

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 50.5 bits (120), Expect = 6e-07
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEE 60
          D +++G G  G   A  L +    V V+E+R+ IGG A TE+
Sbjct: 3  DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTED 44

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
           K +D  +IGGG  GL  A Y      SV ++E    +GG
Sbjct: 5  TKVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGG 44

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 7   TSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
               +A  ++  D ++IG G  GL AA     AG  V +LE+  + GG
Sbjct: 116 DKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGG 163

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 50.6 bits (122), Expect = 8e-07
 Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 10/49 (20%)

Query: 22  VIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL----IPGFK 66
           VIG G  GL AA  L   G  V V +R   +GG      L    IPGFK
Sbjct: 127 VIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGG------LLVYGIPGFK 169

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 50.1 bits (119), Expect = 9e-07
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 19  DALVIGGGHNGLTAAAYLA--RAGLSVAVLERRHVIGGAA 56
           D +++G G  GL+AA  L+  R  L + ++E     GG A
Sbjct: 81  DIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGA 120

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 18/37 (48%), Positives = 25/37 (67%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGA 55
          D +VIGGG +GL+A  +L R+GLS  +L+     GGA
Sbjct: 5  DVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGA 41

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 14 KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
               D L++G G  GL A  Y+   GLS   ++     GG
Sbjct: 2  AADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGG 42

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 16 KKWDALVIGGGHNGLTAAAYLA-RAGLSVAVLERRHVIGGAAVTE 59
           ++D  V+G G  GLT A  +A +    V VLERR  IGG A +E
Sbjct: 6  ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSE 50

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 7  TSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG--GAAVT 58
          +S  +   +    A+VIG G  GL+AA  L ++G+   V E    I   GAA++
Sbjct: 13 SSGENLYFQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAIS 66

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERR 49
          D L+ G G  G   A  L R G  V V+E+ 
Sbjct: 8  DVLINGCGIGGAMLAYLLGRQGHRVVVVEQA 38

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 10 TSALKEKKWDA----LVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
           SA    +WD     +V G G  G+ A+   ARAG  V VLER    GG
Sbjct: 30 RSATTVTEWDYEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGG 78

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
              D  +IGGG  G+ AA       +S  ++E    +GG
Sbjct: 12 HDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGG 51

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51
          + +D +V+GGG  GL  A  +A  G  V VLER   
Sbjct: 3  ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTF 38

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 57/392 (14%), Positives = 121/392 (30%), Gaps = 71/392 (18%)

Query: 19  DALVIGGGHNGLTAAAYLARA------GLSVAVLERRHVIGGAAVTEELIPGFKF----- 67
             ++IGGG  GL AA Y+ +        L + ++E    +GG   T +   G+       
Sbjct: 7   HVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVK-KDGYIIERGPD 65

Query: 68  ---SRCSYLQSLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDS 124
               R      L++         +G   + +V   +   Y +    L    +   +   +
Sbjct: 66  SFLERKKSAPQLVK--------DLGLE-HLLVNNATGQSYVLVNRTLHPMPKGAVMGIPT 116

Query: 125 SPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWF 184
                +            K R  A     L  + +   + L EF    +    +V+    
Sbjct: 117 KIAPFVSTGLFS---LSGKAR--AAMDFILPASKTKDDQSLGEFFRRRVGD--EVVENLI 169

Query: 185 ETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDG----------------NPGI 228
           E  +L    A D     +S + T    Y           G                  G 
Sbjct: 170 EP-LLSGIYAGDI--DKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQ 226

Query: 229 WSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVL 288
           +  +  G+ ++   I    +     +    +V++L  + S     ++L +G  + +  V+
Sbjct: 227 FQTLSTGLQTLVEEI--EKQLKLTKVYKGTKVTKLSHSGSCYS--LELDNGVTLDADSVI 282

Query: 289 SNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGP 348
               P+K    ++   +     + ++  +  ++    + L   +                
Sbjct: 283 V-TAPHKAAAGMLS-ELPAISHLKNMHSTSVAN----VALGFPE-----------GSVQM 325

Query: 349 QHVGTIHIGSESMEEIHSACQEAVNGLPSRRP 380
           +H GT  + S + +   +AC       P   P
Sbjct: 326 EHEGTGFVISRNSDFAITACTWTNKKWPHAAP 357

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51
          +D +V+G G  G+ A   LA+ G+   +++    
Sbjct: 4  FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP 37

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 48.7 bits (115), Expect = 4e-06
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 14  KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL 61
            +K    ++IG G +GL AA  L   G+ V +LE R  +GG   T   
Sbjct: 104 TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRK 151

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 48.8 bits (115), Expect = 4e-06
 Identities = 17/56 (30%), Positives = 25/56 (44%)

Query: 6   FTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL 61
           +        +K    ++IG G +GL AA  L   G+ V +LE R  +GG   T   
Sbjct: 267 YKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRK 322

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
          +     +V+GGG  GL +A  L +AG  V VLE R   GG
Sbjct: 9  KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGG 48

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 16 KKWDALVIGGGHNGLTAAAYLA-RAGLSVAVLERRHVIGGAA 56
           ++D +V+G G  GL AA YL   +G SV V++  H  G   
Sbjct: 22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGSGD 63

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 8/40 (20%), Positives = 18/40 (45%)

Query: 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGA 55
          +     +IG G  G+  A  L   G++  ++  +  +G +
Sbjct: 3  QHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHS 42

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 8  STTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG--GAAVT 58
          +  +    K   A V GGG  GLTAA  L + G  V + E+   +   GA + 
Sbjct: 2  ANVNKTPGKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIY 54

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325

 Score = 46.7 bits (112), Expect = 9e-06
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 11 SALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELI---PGF 65
          +A     +D ++IGGG  GLTAA Y  RA LS  +LE + + GG     E +   PGF
Sbjct: 2  TAPTAHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILE-KGMPGGQIAWSEEVENFPGF 58

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 382

 Score = 46.8 bits (112), Expect = 9e-06
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query: 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGA 55
          +K + +VIGGG  G+T A  LA+ G  V V+E+R +  G+
Sbjct: 4  EKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRFIGSGS 43

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 47.1 bits (111), Expect = 1e-05
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 16 KKWDALVIGGGHNGLTAAAYLARAGLS-VAVLERRHVIGGAAVTEELIPGFKF 67
           K   ++IG G  GL AA+ L + G+    VLE R  +GG   T     G K+
Sbjct: 7  AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKY 59

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 22  VIGGGHNGLTAAAYLARAG-LSVAVLERRHVIGGAAVTEELIPGFK 66
           ++G G   ++ A++LAR G   + + E++  +GG + +E  IP F+
Sbjct: 192 LLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE--IPQFR 235

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 19 DALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIGGAAVTEELIPGFKF 67
            +++GGG  GL AA Y  RA   L++ +LE    +GG   T     GF  
Sbjct: 6  RLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYR-EDGFTI 55

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 47.1 bits (111), Expect = 1e-05
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLER 48
          + K+D +++G G  G T A  L  AG  VA+ + 
Sbjct: 44 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDI 77

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERR 49
             +IG G +GL     L +AG+   +LER+
Sbjct: 4  QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLER 48
            A+VIG G+    +A  L  AG+   +LE 
Sbjct: 6  VPAVVIGTGYGAAVSALRLGEAGVQTLMLEM 36

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERR 49
            +V+G G  GL  A  L   G+ V VLE+ 
Sbjct: 14 SVIVVGAGPAGLMLAGELRLGGVDVMVLEQL 44

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERR 49
          D +V+GGG  GL  A  L   G+   VLE+ 
Sbjct: 51 DVVVVGGGPVGLMLAGELRAGGVGALVLEKL 81

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERR 49
            +V+G G  G+  A  L  AG+ V VLER 
Sbjct: 13 AVIVVGAGPAGMMLAGELRLAGVEVVVLERL 43

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLER 48
           ALVIG G+ G  AA  L +AG+   ++E 
Sbjct: 13 PALVIGSGYGGAVAALRLTQAGIPTQIVEM 42

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERR 49
          D L++GGG  G+  A  LA   +   V+E+ 
Sbjct: 28 DVLILGGGPVGMALALDLAHRQVGHLVVEQT 58

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401

 Score = 45.5 bits (109), Expect = 3e-05
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG 53
           +  + ++IG G  GL  AA LA+ G SV V +    IG
Sbjct: 2  SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIG 40

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERR 49
          D LV+G G  GL+ A +LAR G+ V V+ERR
Sbjct: 7  DVLVVGAGLGGLSTAMFLARQGVRVLVVERR 37

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 7  TSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR 49
           S  + L +K     +IGGG  GLT A  L + G+ V+V ER 
Sbjct: 18 GSHMNLLSDKN--VAIIGGGPVGLTMAKLLQQNGIDVSVYERD 58

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417

 Score = 44.8 bits (107), Expect = 5e-05
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 13 LKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG 53
          +  +K D ++IG G  G+  A    + G  V V++     G
Sbjct: 23 MVAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPG 63

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311

 Score = 44.4 bits (106), Expect = 5e-05
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELI---PGFK 66
          D  +IGGG  GL+A  Y  R G+  AVL  + + GG       I   PG K
Sbjct: 3  DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVK 53

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} Length = 561

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 11 SALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR 49
            + EK+ D LVIGGG  G   A      G+   ++E  
Sbjct: 12 GEMSEKQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMN 50

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Length = 405

 Score = 44.5 bits (106), Expect = 6e-05
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 2  WRRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAG--LSVAVLERRHVIGGA 55
              + +     K K +DA+++GGG +GL  A +LA+     +VAVLE+  + GG 
Sbjct: 9  PEFLWANPE--PK-KSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGN 61

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447

 Score = 44.4 bits (106), Expect = 6e-05
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLER 48
            +D +VIGGG +GL AA   A  G +V +L++
Sbjct: 25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDK 57

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* Length = 571

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 11 SALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR 49
            +++++ D L+IGGG  G   A   A +G+   ++E +
Sbjct: 26 QKMQQEELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQ 64

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315

 Score = 43.7 bits (104), Expect = 8e-05
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELI---PGF 65
              D  +IGGG  GL+A  Y  R GL   V+  + + GG   +   I   PG 
Sbjct: 2  NAMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSSEIENYPGV 55

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 22/63 (34%), Positives = 28/63 (44%)

Query: 2   WRRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL 61
           WRR +       KE     LV+G G +GL AA  L   G  V + E    +GG    E  
Sbjct: 376 WRRGWHPERIRAKESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESA 435

Query: 62  IPG 64
           +PG
Sbjct: 436 LPG 438

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 19  DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEE 60
           D LV+G G  GL AA   +R+G  V +L+ R   GG  +   
Sbjct: 130 DVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTA 171

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 16/38 (42%), Positives = 17/38 (44%)

Query: 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG 53
             D +VIG G  GL  A  LA  G  V V E    IG
Sbjct: 3  TDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIG 40

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 35/119 (29%)

Query: 10  TSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG---------AAV--- 57
           ++  K    DA+VIG G  G+  A  + +AG+ V  +E    +GG           +   
Sbjct: 2   SNRAKSPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTE 61

Query: 58  --------TEELIPGFKFSR--------CSYLQSL-----LRPSLIKCGTRIGE-TWNE 94
                    + +IP +++S           Y+        +R    +  TR+    + E
Sbjct: 62  SYAYGYFALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKH-YRFNTRVTAARYVE 119

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 60/477 (12%), Positives = 115/477 (24%), Gaps = 191/477 (40%)

Query: 59  EELIPGF--KFSR---CSYLQSLLRPSLIKCGTRIGETWNEVVEAKSII--VYAIFEDQL 111
           ++++  F   F     C  +Q + +  L K      E  + ++ +K  +     +F   L
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSILSK------EEIDHIIMSKDAVSGTLRLFWTLL 72

Query: 112 DK----FSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVE 167
            K      +FV+ +   +   L+   S    + +     +  +     R       D   
Sbjct: 73  SKQEEMVQKFVEEVLRINYKFLM---SPIKTEQRQPSMMTRMYIEQRDRL----YNDNQV 125

Query: 168 FVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPG 227
           F    +S     L        L+  L              P    VL+            
Sbjct: 126 FAKYNVSRLQPYLK-------LRQALLEL----------RPAK-NVLID----------- 156

Query: 228 IWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIV 287
                  G+       GS                                 G    +  V
Sbjct: 157 -------GVL------GS---------------------------------GKTWVALDV 170

Query: 288 LSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKI--NLAVDKLPQFQCCKLSHPD 345
             +              I    F L++K+ +      ++   L     P +   +  H  
Sbjct: 171 CLSYKVQCKM----DFKI----FWLNLKNCNSPETVLEMLQKLLYQIDPNW-TSRSDHSS 221

Query: 346 PGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLF 405
                             IHS  Q  +  L   +P     +  VL         +V    
Sbjct: 222 NIKLR-------------IHSI-QAELRRLLKSKPYENCLL--VLL--------NV---- 253

Query: 406 IQYTPYKPSDGSWMDPAYRDSFANRCFSLI---------------------DEYAPGFS- 443
                         +    ++F   C  L+                     D ++   + 
Sbjct: 254 ------------Q-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 444 -------SSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSL--FLMRPVKGWSNYR 491
                     +      P DL RE+     N    ++  +S+   L      W N++
Sbjct: 301 DEVKSLLLKYLD---CRPQDLPREV--LTTNPRRLSIIAESIRDGLAT----WDNWK 348

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 16/36 (44%), Positives = 20/36 (55%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
          D LV+G G +GL A   L   G SV V+E    +GG
Sbjct: 18 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG 53

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 15/35 (42%), Positives = 18/35 (51%)

Query: 14 KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLER 48
                  V+GG  +GLTAA  L  AG+ V V ER
Sbjct: 2  SPTTDRIAVVGGSISGLTAALMLRDAGVDVDVYER 36

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 18/145 (12%)

Query: 19  DALVIGGGHNGLTAAAYLARAGLS-VAVLERRHVIGGAAVTEEL-----------IPGFK 66
             +V+G G +G++AA  L+ AG++ + +LE    IGG                  + G  
Sbjct: 6   RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVN 65

Query: 67  FSRCSYLQSLLRPSLIKCGTR------IGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDL 120
             + + +  ++  +L     R          + E              +  D   +  + 
Sbjct: 66  GGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEK 125

Query: 121 LFDSSPPELLQGSSSYSHQFKNKIR 145
           L  +         S  + Q  N+ +
Sbjct: 126 LSATLHASGRDDMSILAMQRLNEHQ 150

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
          D +V+G G  GL A       GL+V   E    +GG
Sbjct: 23 DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGG 58

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 17/63 (26%), Positives = 28/63 (44%)

Query: 2   WRRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL 61
           +RR +        + K   L++G G +G  AA  L  +G +V + +    IGG       
Sbjct: 374 YRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAA 433

Query: 62  IPG 64
           +PG
Sbjct: 434 LPG 436

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 41.5 bits (96), Expect = 5e-04
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 21 LVIGGGHNGLTAAAYLARAGLSVAVLE-RRHVIGG 54
          L++G G  GL A   L RAG  V +LE   + +GG
Sbjct: 48 LIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGG 82

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 19 DALVIGGGHNGLTAAAYLARAGL-SVAVLERRHVIG--GAAV 57
          D L+ G G  GL+ A  L +AG+  V +LE    I   G  +
Sbjct: 6  DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGI 47

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG 53
          D LVIG G  G +   +L+  G  V VLER    G
Sbjct: 11 DYLVIGAGIAGASTGYWLSAHG-RVVVLEREAQPG 44

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 16 KKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRHVIGGAA 56
          K    L++G G  G + A +LAR G  +V VL+   V    +
Sbjct: 5  KSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAIS 46

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
           +++DA+ IGGG  G   +AYL   G    +++R   +GG
Sbjct: 41 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGG 80

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* Length = 660

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 13 LKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVL 46
          +K +  D+LVIGGG  GL AA    + GLS  VL
Sbjct: 1  MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVL 34

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 493

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 19  DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTE 59
           D  +IGGG  G+ AA  L +   +VA++E R  +GG    +
Sbjct: 110 DVAIIGGGPAGIGAALELQQYL-TVALIEERGWLGGDMWLK 149

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 12  ALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPG 64
           A+++K     V+G G  GL  A   A  G  V + +    IGG     + IPG
Sbjct: 370 AVQKKNL--AVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPG 420

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	531
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	100.0
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	100.0
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	100.0
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	100.0
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.97
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.97
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.97
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.96
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.95
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.95
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.95
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.95
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.95
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.94
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.94
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.93
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.93
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.92
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.92
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	99.91
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.91
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.89
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.89
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.89
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.88
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.84
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.83
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.78
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	99.78
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.75
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.73
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.7
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.59
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.58
3dme_A	369	Conserved exported protein; structural genomics, P	99.56
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.55
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.51
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.49
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.48
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.43
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.43
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.42
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.42
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.41
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.4
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.36
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.34
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.34
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.34
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.33
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.33
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.31
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.3
4dna_A	463	Probable glutathione reductase; structural genomic	99.3
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.29
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.29
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.28
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.28
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.28
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.27
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.24
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.23
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.23
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.2
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.2
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.2
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.19
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.19
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.19
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.19
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.18
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.18
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.18
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.18
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.17
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.17
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.16
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.16
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.15
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.15
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.15
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.14
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.14
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.14
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.13
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.13
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.13
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.13
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.12
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.12
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.12
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.11
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.11
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.11
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.1
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.1
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.08
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.08
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.07
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.05
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.04
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.04
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.04
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.03
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.03
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.03
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.03
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.03
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.02
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.02
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.02
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.02
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.02
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.01
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.01
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.0
3atr_A	453	Conserved archaeal protein; saturating double bond	99.0
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.0
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.99
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.99
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.99
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.99
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.98
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.98
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.97
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.96
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.96
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.95
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.95
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.94
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.94
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.94
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.93
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.93
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.92
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.91
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.91
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.9
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.89
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.89
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.89
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.89
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.89
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.88
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.88
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.87
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.87
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.86
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.85
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.84
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.84
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.82
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.82
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.81
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.8
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.8
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.77
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.77
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	98.76
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.76
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.75
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.73
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.71
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.71
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.71
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.68
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.62
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.6
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.56
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.55
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	98.53
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	98.52
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.51
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.47
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.47
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.46
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.44
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	98.44
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.43
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	98.42
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.42
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.39
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.37
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.36
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.35
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.35
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.35
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.31
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.28
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.27
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.2
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.2
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.18
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.17
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.16
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.14
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.14
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.13
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.13
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.11
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.1
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.09
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.05
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.04
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.03
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.02
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.02
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.98
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.98
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.98
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.96
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.96
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.94
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.94
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.93
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.91
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.9
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.89
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.87
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.87
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.86
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.83
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.82
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.82
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.82
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.81
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.77
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.75
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.74
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.71
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.69
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.68
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.67
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.64
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.63
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.56
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.55
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.5
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.5
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.45
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.44
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.41
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.38
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.37
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.3
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.28
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.18
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.16
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.12
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.07
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.99
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	96.88
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.88
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	96.86
2e1m_C	181	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	96.86
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.6
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	96.56
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.49
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.44
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.4
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.38
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.37
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.34
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.27
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.21
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.13
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.11
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.11
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.05
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	95.93
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.9
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	95.87
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.86
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.8
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	95.79
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.64
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	95.59
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	95.56
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.53
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.48
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.39
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.38
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.38
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	95.31
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.27
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.26
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.19
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.18
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	95.14
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	95.14
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.13
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	95.13
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.11
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.1
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.08
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.08
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.07
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.07
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.03
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.98
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	94.95
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	94.94
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	94.89
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	94.87
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.86
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	94.84
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	94.82
2e1m_B	130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	94.81
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	94.8
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.78
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	94.72
3qha_A	296	Putative oxidoreductase; seattle structural genomi	94.71
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	94.69
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.63
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	94.59
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.56
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	94.56
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	94.52
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	94.52
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.47
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	94.47
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	94.43
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.43
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	94.42
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	94.4
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	94.38
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	94.35
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	94.32
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	94.31
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	94.28
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	94.26
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.22
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	94.22
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	94.21
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	94.19
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	94.17
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	94.17
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.15
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.14
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	94.14
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	94.13
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.09
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	94.07
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.06
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.05
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.03
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	93.98
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	93.98
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	93.87
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	93.87
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	93.86
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	93.84
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	93.82
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	93.82
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	93.74
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	93.74
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	93.73
1fec_A	490	Trypanothione reductase; redox-active center, oxid	93.7
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	93.68
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	93.67
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.67
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	93.65
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.64
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	93.63
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	93.62
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	93.55
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	93.55
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	93.49
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	93.48
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	93.47
4ezb_A	317	Uncharacterized conserved protein; structural geno	93.45
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	93.39
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	93.39
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	93.34
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	93.29
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	93.2
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	93.19
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	93.18
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	93.15
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	93.13
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	93.12
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	93.09
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	93.09
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	93.06
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	93.06
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	93.02
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	93.01
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	92.99
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	92.98
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	92.98
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	92.97
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.91
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	92.85
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	92.83
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	92.8
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	92.77
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	92.74
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	92.69
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	92.69
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	92.61
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	92.6
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	92.58
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	92.57
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	92.51
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	92.5
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	92.48
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	92.48
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	92.48
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	92.47
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	92.47
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	92.47
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	92.43
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	92.42
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	92.41
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	92.35
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	92.34
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	92.3
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	92.3
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	92.29
4dna_A	463	Probable glutathione reductase; structural genomic	92.27
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	92.25
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	92.23
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	92.2
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	92.19
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	92.13
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	92.11
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	92.0
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	91.97
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	91.88
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	91.87
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	91.84
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	91.75
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	91.64
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	91.63
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	91.59
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	91.56
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	91.5
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	91.48
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	91.47
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	91.47
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	91.45
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	91.44
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	91.32
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	91.32
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	91.27
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	91.21
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	91.15
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	91.04
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	90.93
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	90.92
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	90.85
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	90.81
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	90.78
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	90.74
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	90.57
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	90.54
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	90.44
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	90.37
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	90.26
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.23
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	90.12
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	90.06
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	90.05
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	89.99
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	89.92
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	89.33
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	89.75
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	89.64
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	89.56
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	89.49
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	89.38
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	89.31
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	89.19
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	89.17
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	89.11
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	89.1
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	89.08
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	88.96
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	88.94
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	88.91
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	88.91
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	88.89
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	88.82
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	88.75
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	88.75
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	88.75
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	88.7
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	88.64
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	88.51
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	88.47
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	88.42
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	88.39
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	88.34
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	88.27
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	88.24
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	88.23
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	88.17
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	87.97
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	87.87

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=100.00  E-value=2e-60  Score=488.26  Aligned_cols=462  Identities=22%  Similarity=0.320  Sum_probs=262.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcch--hhhhhc-Cc--ccccc
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLR--PSLIKC-GT--RIGET   91 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~--~~~~~~-gl--~~~~~   91 (531)
                      +.+|||||||++||+||++|+++|++|+|||+++++||+++++. .+||.||.|++++....  ..++.. |.  ...+.
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~-~~G~~~D~G~~~~~~~~~~~~l~~~~g~~~~~~~~   79 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYE-DQGFTFDAGPTVITDPSAIEELFALAGKQLKEYVE   79 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEE-ETTEEEECSCCCBSCTHHHHHHHHTTTCCGGGTCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEE-eCCEEEecCceeecCchhHHHHHHHhcchhhhcee
Confidence            46899999999999999999999999999999999999999986 78999999998753211  112222 21  11110


Q ss_pred             hh--------------hhccchhhhHHHH--------HHHHHHHHHHHHHHhhcCCCccccc-CCCcchhhhhhhhhhhh
Q 048009           92 WN--------------EVVEAKSIIVYAI--------FEDQLDKFSQFVDLLFDSSPPELLQ-GSSSYSHQFKNKIRNSA  148 (531)
Q Consensus        92 ~~--------------~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  148 (531)
                      ..              .+....+...+..        ....+.++......+.......... ....+.+          
T Consensus        80 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  149 (501)
T 4dgk_A           80 LLPVTPFYRLCWESGKVFNYDNDQTRLEAQIQQFNPRDVEGYRQFLDYSRAVFKEGYLKLGTVPFLSFRD----------  149 (501)
T ss_dssp             EEEESSSEEEEETTSCEEEECSCHHHHHHHHHHHCTHHHHHHHHHHHHHHHHTSSSCC--CCCCCCCHHH----------
T ss_pred             eEecCcceEEEcCCCCEEEeeccHHHHHHHHhhcCccccchhhhHHHHHHHhhhhhhhhccccccchhhh----------
Confidence            00              0000111111111        0111122222222222211111000 0000000          


Q ss_pred             hHHHHHHHHHhcChhhHHHHHHHHhccHHHHhhcccCChhHHHHHhhhhhhccCCCCCCCChHHHHHHHHhhccCCCCCc
Q 048009          149 FWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGI  228 (531)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (531)
                          .+...     .....+.  ...+..+++.+++.++.++..+......... .+......+.++.+.    ....|.
T Consensus       150 ----~~~~~-----~~~~~l~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g~-~p~~~~~~~~~~~~~----~~~~G~  213 (501)
T 4dgk_A          150 ----MLRAA-----PQLAKLQ--AWRSVYSKVASYIEDEHLRQAFSFHSLLVGG-NPFATSSIYTLIHAL----EREWGV  213 (501)
T ss_dssp             ----HHHSG-----GGTTTSH--HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHS-CC--CCCTHHHHHHH----HSCCCE
T ss_pred             ----hhhhh-----hhhhhhh--hcccHHHHHHHHhccHHHHhhhhhhhcccCC-Ccchhhhhhhhhhhh----hccCCe
Confidence                00000     0000000  1235567788899999999888744332221 233333444444433    234566


Q ss_pred             cccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCCh
Q 048009          229 WSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPD  308 (531)
Q Consensus       229 ~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~  308 (531)
                      | +|+||+++|+++|++.++++|++|++|++|++|..++ +++++|+++||+++.||.||+|++++.++..|+++...+.
T Consensus       214 ~-~p~GG~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~-~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~~~~~~  291 (501)
T 4dgk_A          214 W-FPRGGTGALVQGMIKLFQDLGGEVVLNARVSHMETTG-NKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPAAV  291 (501)
T ss_dssp             E-EETTHHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETTSCEEECSCEEECCC----------------
T ss_pred             E-EeCCCCcchHHHHHHHHHHhCCceeeecceeEEEeeC-CeEEEEEecCCcEEEcCEEEECCCHHHHHHHhccccccch
Confidence            6 9999999999999999999999999999999999998 9999999999999999999999999998888988776777


Q ss_pred             HHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCC
Q 048009          309 DFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPS  388 (531)
Q Consensus       309 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  388 (531)
                      ...+.++..+++.+.++++++++..++.          ..+  +++++..+....+++.+   ..+.+++++.+++++||
T Consensus       292 ~~~~~~~~~~~~~s~~~~~~~l~~~~~~----------l~~--~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~s  356 (501)
T 4dgk_A          292 KQSNKLQTKRMSNSLFVLYFGLNHHHDQ----------LAH--HTVCFGPRYRELIDEIF---NHDGLAEDFSLYLHAPC  356 (501)
T ss_dssp             -----------CCEEEEEEEEESSCCTT----------SCS--EEEEEECC----------------CCCEEEEEEECGG
T ss_pred             hhhhhhhccccCCceeEEEecccCCccc----------ccc--ceeccccchhhhccccc---cccccccCCceecccCC
Confidence            7778888888989999999999986532          122  37777666655555444   35678889999999999


Q ss_pred             CCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHH-hCCCCCCceeEEEecCcchHHHHhCCCCCc
Q 048009          389 VLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDE-YAPGFSSSIIGYDMLTPPDLEREIGLTGGN  467 (531)
Q Consensus       389 ~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~-~~P~~~~~i~~~~~~tp~~~~~~~~~~~G~  467 (531)
                      ..||+++|+|++++++++. .|+.... ..++++.|+++.+++++.|++ ++|+++++|+..++.||.||+++++.++|+
T Consensus       357 ~~dp~~ap~G~~~~~~~~~-~p~~~~~-~~~~~~~~~~~~~~vl~~l~~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~  434 (501)
T 4dgk_A          357 VTDSSLAPEGCGSYYVLAP-VPHLGTA-NLDWTVEGPKLRDRIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQLNAYHGS  434 (501)
T ss_dssp             GTCGGGSSTTCEEEEEEEE-ECCTTTS-CCCHHHHHHHHHHHHHHHHHHHTCTTHHHHEEEEEEECTTTTC---------
T ss_pred             CCCCCcCCCCCceEEEEEe-cCccccc-cccHHHHHHHHHHHHHHHHHHhhCCChHHceEEEEECCHHHHHHHcCCCCcc
Confidence            9999999999999998865 4443221 222345689999999999987 569999999999999999999999999999


Q ss_pred             ccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCc--hHHHHHHHHHHHhhh
Q 048009          468 IFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVLQDLKK  528 (531)
Q Consensus       468 ~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~~~~~~  528 (531)
                      +||..+.+.|...+||.    +..|||+|||+||+||+||+|++++  ||++||++|++|+.+
T Consensus       435 ~~g~~~~~~q~~~~RP~----~~~t~i~gLyl~G~~t~pG~Gv~ga~~SG~~aA~~il~dL~g  493 (501)
T 4dgk_A          435 AFSVEPVLTQSAWFRPH----NRDKTITNLYLVGAGTHPGAGIPGVIGSAKATAGLMLEDLIG  493 (501)
T ss_dssp             -------------------------CCTTEEECCCH------HHHHHHHHHHHHHHHHHHHC-
T ss_pred             ccChhcchhhccccCCC----CCCCCCCCEEEECCCCCCcccHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999998889983    4568999999999999999999997  999999999999843

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=100.00  E-value=1.2e-35  Score=298.02  Aligned_cols=405  Identities=20%  Similarity=0.221  Sum_probs=245.2

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhh-c-chh---hhhhc-Ccccccc
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQS-L-LRP---SLIKC-GTRIGET   91 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~-~-~~~---~~~~~-gl~~~~~   91 (531)
                      +||+|||||++||+||++|+++|++|+|+|+++++||++.++. ..|+.+|.|+.+.. . ..+   .+++. |+...+.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~   79 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLS-YKGFQLSSGAFHMLPNGPGGPLACFLKEVEASVNIV   79 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEE-ETTEEEESSSCSCBTTGGGSHHHHHHHHTTCCCCEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeec-cCCcEEcCCCceEecCCCccHHHHHHHHhCCCceEE
Confidence            5899999999999999999999999999999999999999875 77999999964321 1 111   11111 3321110


Q ss_pred             hhhhc-cchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcc-hhhhhhhhhhhhhHHHHHHHHHhcChhhHHHHH
Q 048009           92 WNEVV-EAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSY-SHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFV  169 (531)
Q Consensus        92 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (531)
                      ..... ....                     ..........+...+ .......+.... ..+..........      .
T Consensus        80 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------~  131 (425)
T 3ka7_A           80 RSEMTTVRVP---------------------LKKGNPDYVKGFKDISFNDFPSLLSYKD-RMKIALLIVSTRK------N  131 (425)
T ss_dssp             ECCCCEEEEE---------------------SSTTCCSSTTCEEEEEGGGGGGGSCHHH-HHHHHHHHHHTTT------S
T ss_pred             ecCCceEEee---------------------cCCCcccccccccceehhhhhhhCCHHH-HHHHHHHHHhhhh------c
Confidence            00000 0000                     000000000000000 000000000000 0000000000000      0


Q ss_pred             HHHhccHHHHhhcccCChhHHHHHhhh--hhhccCCCCCCCCh--HHHHHHHHhhccCCCCCccccccCchHHHHHHHHH
Q 048009          170 DLLLSPASKVLNKWFETDVLKATLATD--AVIGTMSSVHTPGS--GYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGS  245 (531)
Q Consensus       170 ~~~~~~~~~~l~~~~~~~~l~~~~~~~--~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~  245 (531)
                      .....++.+++.+++.++.++.++...  ...+.  .+.....  .+..+....    ...+. .++.||++.++++|++
T Consensus       132 ~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~~~~~~----~~~~~-~~~~gG~~~l~~~l~~  204 (425)
T 3ka7_A          132 RPSGSSLQAWIKSQVSDEWLIKFADSFCGWALSL--KSDEVPVEEVFEIIENMY----RFGGT-GIPEGGCKGIIDALET  204 (425)
T ss_dssp             CCCSSBHHHHHHHHCCCHHHHHHHHHHHHHHHSS--CGGGSBHHHHHHHHHHHH----HHCSC-EEETTSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHhcCCHHHHHHHHHHHHHHhCC--CcccchHHHHHHHHHHHH----hcCCc-cccCCCHHHHHHHHHH
Confidence            002356777788877777776665421  12221  2222222  122222211    11233 3899999999999999


Q ss_pred             HHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCC-CCC--ChHHHHHhhccCCCCC
Q 048009          246 AAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPG-NIL--PDDFILSIKHSDYSSG  322 (531)
Q Consensus       246 ~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~-~~~--~~~~~~~i~~~~~~~~  322 (531)
                      .++++|++|+++++|++|..++ +++++|+++ |+++.||.||+|++++.+ .+|++. ..+  ++.+.++++++++ .+
T Consensus       205 ~~~~~G~~i~~~~~V~~i~~~~-~~~~gv~~~-g~~~~ad~VV~a~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~~-~~  280 (425)
T 3ka7_A          205 VISANGGKIHTGQEVSKILIEN-GKAAGIIAD-DRIHDADLVISNLGHAAT-AVLCSEALSKEADAAYFKMVGTLQP-SA  280 (425)
T ss_dssp             HHHHTTCEEECSCCEEEEEEET-TEEEEEEET-TEEEECSEEEECSCHHHH-HHHTTTTCCTTTTHHHHHHHHHCCC-BE
T ss_pred             HHHHcCCEEEECCceeEEEEEC-CEEEEEEEC-CEEEECCEEEECCCHHHH-HHhcCCcccccCCHHHHHHhhCcCC-Cc
Confidence            9999999999999999999987 888888875 677999999999999985 578864 334  7778888888887 46


Q ss_pred             eEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCCCCCceEE
Q 048009          323 TTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVI  402 (531)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l  402 (531)
                      .+++++++++++ .            .+. .++++.+.                  .+...++++|..||+++|+|++++
T Consensus       281 ~~~v~l~~~~~~-~------------~~~-~~~~~~~~------------------~~~~~~~~~s~~~p~~ap~G~~~l  328 (425)
T 3ka7_A          281 GIKICLAADEPL-V------------GHT-GVLLTPYT------------------RRINGVNEVTQADPELAPPGKHLT  328 (425)
T ss_dssp             EEEEEEEESSCS-S------------CSS-SEEECCSS------------------SSEEEEECGGGTCGGGSCTTCEEE
T ss_pred             eEEEEeecCCCc-c------------CcC-EEEECCCh------------------hhcceEEeccCCCCCcCCCCCeEE
Confidence            789999998853 1            222 45553221                  235578999999999999999999


Q ss_pred             EEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCCCCCcccccCCCccccccCC
Q 048009          403 NLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMR  482 (531)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~~~G~~~~~~~~~~~~~~~r  482 (531)
                      +++.. .+       |++.+..++..+.++++|++++|+.+..+.  .+   ..|..  ..|....   .      ...+
T Consensus       329 ~~~~~-~~-------~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~--~v---~~~~~--~~P~~~~---~------~~~~  384 (425)
T 3ka7_A          329 MCHQY-VA-------PENVKNLESEIEMGLEDLKEIFPGKRYEVL--LI---QSYHD--EWPVNRA---A------SGTD  384 (425)
T ss_dssp             EEEEE-EC-------GGGGGGHHHHHHHHHHHHHHHSTTCCEEEE--EE---EEEBT--TBCSBSS---C------TTCC
T ss_pred             EEEec-cc-------cccccchHHHHHHHHHHHHHhCCCCceEEE--EE---EEECC--Ccccccc---c------cCCC
Confidence            88642 22       322222356679999999999998543332  21   12221  1121111   0      0134


Q ss_pred             CCCCCCCCCCCCCCeeecCCCCCC--CCCcCCc--hHHHHHHHHH
Q 048009          483 PVKGWSNYRTPLQGLYMCGSGTHP--GGGVMGA--PGRNAAGIVL  523 (531)
Q Consensus       483 p~~~~~~~~t~~~~ly~aG~~~~~--g~g~~~~--sg~~aa~~i~  523 (531)
                      |     ..+||++|||+||||+++  |.|++++  ||+.||+.|+
T Consensus       385 ~-----~~~~p~~gL~laG~~~~~~gg~gv~~~~~s~~~~~~~i~  424 (425)
T 3ka7_A          385 P-----GNETPFSGLYVVGDGAKGKGGIEVEGVALGVMSVMEKVL  424 (425)
T ss_dssp             C-----CSBCSSBTEEECSTTSCCTTCCHHHHHHHHHHHHHHC--
T ss_pred             C-----CCCCCcCCeEEeCCccCCCCCCccHHHHHHHHHHHHHhh
Confidence            4     678999999999999998  5666776  9999999886

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=100.00  E-value=4.1e-33  Score=278.80  Aligned_cols=383  Identities=21%  Similarity=0.213  Sum_probs=234.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcc--hh---hhhhc-Ccccccc
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLL--RP---SLIKC-GTRIGET   91 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~--~~---~~~~~-gl~~~~~   91 (531)
                      +||+|||||++||+||++|+++|++|+|+|+++++||++.+.. ..|+.+|.|+++....  .+   .+++. |+...+.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~   79 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLP-YKGFQLSTGALHMIPHGEDGPLAHLLRILGAKVEIV   79 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEE-ETTEEEESSSCSEETTTTSSHHHHHHHHHTCCCCEE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEec-cCCEEEecCCeEEEccCCChHHHHHHHHhCCcceEE
Confidence            4899999999999999999999999999999999999999876 6799999997442110  11   11111 2110000


Q ss_pred             hhhhccchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhh-hhhHHHHHHHHHhcChhhHHHHH-
Q 048009           92 WNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRN-SAFWAHCLRRAISLGQKDLVEFV-  169 (531)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-  169 (531)
                      .                               ..+...     .+.+.....+.. ...+.........   ....... 
T Consensus        80 ~-------------------------------~~~~~~-----~~~~g~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~  120 (421)
T 3nrn_A           80 N-------------------------------SNPKGK-----ILWEGKIFHYRESWKFLSVKEKAKAL---KLLAEIRM  120 (421)
T ss_dssp             E-------------------------------CSSSCE-----EEETTEEEEGGGGGGGCC-----------CCHHHHHT
T ss_pred             E-------------------------------CCCCeE-----EEECCEEEEcCCchhhCCHhHHHHHH---HHHHHHHh
Confidence            0                               000000     000000000000 0000000000000   0000000 


Q ss_pred             ---HHHhccHHHHhhcc-cCChhHHHHHhh--hhhhccCCCCCCCCh--HHHHHHHHhhccCCCCCccccccCchHHHHH
Q 048009          170 ---DLLLSPASKVLNKW-FETDVLKATLAT--DAVIGTMSSVHTPGS--GYVLLHHVMGETDGNPGIWSYVEGGMGSVSM  241 (531)
Q Consensus       170 ---~~~~~~~~~~l~~~-~~~~~l~~~~~~--~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~  241 (531)
                         .....+..+++.++ +.++.++..+..  ..+.+.  .+.....  .+..+.....    ..+.+ +++||++.+++
T Consensus       121 ~~~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~g~~-~~~gG~~~l~~  193 (421)
T 3nrn_A          121 NKLPKEEIPADEWIKEKIGENEFLLSVLESFAGWADSV--SLSDLTALELAKEIRAALR----WGGPG-LIRGGCKAVID  193 (421)
T ss_dssp             TCCCCCCSBHHHHHHHHTCCCHHHHHHHHHHHHHHHSS--CGGGSBHHHHHHHHHHHHH----HCSCE-EETTCHHHHHH
T ss_pred             ccCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHHhcCC--CcccCCHHHHHHHHHHHhh----cCCcc-eecCCHHHHHH
Confidence               00125677777777 777776665442  112221  2222222  2222222211    12334 89999999999


Q ss_pred             HHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHHHHHhhccCCCC
Q 048009          242 AIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSS  321 (531)
Q Consensus       242 ~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i~~~~~~~  321 (531)
                      +|++.++++|++|+++++|++|..++ +++  | +.+|+++.||.||+|++++.+ .+|++.+.+++...+.+.+++++ 
T Consensus       194 ~l~~~~~~~G~~i~~~~~V~~i~~~~-~~v--V-~~~g~~~~ad~Vv~a~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~-  267 (421)
T 3nrn_A          194 ELERIIMENKGKILTRKEVVEINIEE-KKV--Y-TRDNEEYSFDVAISNVGVRET-VKLIGRDYFDRDYLKQVDSIEPS-  267 (421)
T ss_dssp             HHHHHHHTTTCEEESSCCEEEEETTT-TEE--E-ETTCCEEECSEEEECSCHHHH-HHHHCGGGSCHHHHHHHHTCCCC-
T ss_pred             HHHHHHHHCCCEEEcCCeEEEEEEEC-CEE--E-EeCCcEEEeCEEEECCCHHHH-HHhcCcccCCHHHHHHHhCCCCC-
Confidence            99999999999999999999999877 665  5 567778999999999999985 67887545788888889999985 


Q ss_pred             CeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCCCCCceE
Q 048009          322 GTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHV  401 (531)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~  401 (531)
                      +++++++++++.+ +           + +. +++++.+.                  . +..++++|..||+++|+|+++
T Consensus       268 ~~~~v~l~~~~~~-~-----------~-~~-~~~~~~~~------------------~-~~~i~~~s~~~p~~ap~G~~~  314 (421)
T 3nrn_A          268 EGIKFNLAVPGEP-R-----------I-GN-TIVFTPGL------------------M-INGFNEPSALDKSLAREGYTL  314 (421)
T ss_dssp             CEEEEEEEEESSC-S-----------S-CS-SEEECTTS------------------S-SCEEECGGGTCGGGSCTTEEE
T ss_pred             ceEEEEEEEcCCc-c-----------c-CC-eEEEcCCc------------------c-eeeEeccCCCCCCcCCCCceE
Confidence            8899999998753 1           1 22 45553331                  1 225889999999999999999


Q ss_pred             EEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCCCCCcccccCCCccccccC
Q 048009          402 INLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLM  481 (531)
Q Consensus       402 l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~~~G~~~~~~~~~~~~~~~  481 (531)
                      ++++.. .+.       .+.   ++..+.++++|++++|  ...+...     .+|..  +.|.   |+...      ..
T Consensus       315 ~~~~~~-~~~-------~~~---~~~~~~~~~~L~~~~p--~~~~~~~-----~~~~~--~~p~---~~~~~------~~  365 (421)
T 3nrn_A          315 IMAHMA-LKN-------GNV---KKAIEKGWEELLEIFP--EGEPLLA-----QVYRD--GNPV---NRTRA------GL  365 (421)
T ss_dssp             EEEEEE-CTT-------CCH---HHHHHHHHHHHHHHCT--TCEEEEE-----EEC------------------------
T ss_pred             EEEEEe-ecc-------ccH---HHHHHHHHHHHHHHcC--CCeEEEe-----eeccC--CCCc---ccccC------CC
Confidence            888642 321       221   3458999999999999  2222222     11211  1121   11000      01


Q ss_pred             CCCCCCCCCCCCCCCeeecCCCCCCCCCc--CCc--hHHHHHHHH
Q 048009          482 RPVKGWSNYRTPLQGLYMCGSGTHPGGGV--MGA--PGRNAAGIV  522 (531)
Q Consensus       482 rp~~~~~~~~t~~~~ly~aG~~~~~g~g~--~~~--sg~~aa~~i  522 (531)
                      ++     . .++ +|||+|||++.+++|+  ++|  ||+.||++|
T Consensus       366 ~~-----~-~~~-~gl~laGd~~~~~~g~~~~ga~~sg~~aA~~l  403 (421)
T 3nrn_A          366 HI-----E-WPL-NEVLVVGDGYRPPGGIEVDGIALGVMKALEKL  403 (421)
T ss_dssp             CC-----C-CCC-SSEEECSTTCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred             CC-----C-CCC-CcEEEECCcccCCCceeeehHHHHHHHHHHHh
Confidence            22     3 678 9999999999987778  777  999999998

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=100.00  E-value=3.7e-31  Score=271.69  Aligned_cols=419  Identities=19%  Similarity=0.160  Sum_probs=243.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccch
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGETW   92 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~~   92 (531)
                      ++||+|||||++||+||++|+++|++|+|+|+++++||++.+....+|+.+|.|++++....+.+.+.    |+......
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~   83 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVN   83 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEEECC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCCcHHHHHHHHHcCCcceecc
Confidence            58999999999999999999999999999999999999999876335899999987755433333322    54311100


Q ss_pred             ---hhh--------ccchhhhH--HHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHh
Q 048009           93 ---NEV--------VEAKSIIV--YAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAIS  159 (531)
Q Consensus        93 ---~~~--------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (531)
                         ..+        ........  ..........+...+..+.......                               
T Consensus        84 ~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------  132 (520)
T 1s3e_A           84 EVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSD-------------------------------  132 (520)
T ss_dssp             CSSEEEEEETTEEEEECSSSCCCCSHHHHHHHHHHHHHHHHHHTTSCTT-------------------------------
T ss_pred             cCCceEEEECCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCcC-------------------------------
Confidence               000        00000000  0000000111111111111110000                               


Q ss_pred             cChhhHHHHHHHHhccHHHHhhcccCChhHHHHHhh--hhhhccCCCCCCCChHHHHHHHHhhc------c-CCCCCccc
Q 048009          160 LGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLAT--DAVIGTMSSVHTPGSGYVLLHHVMGE------T-DGNPGIWS  230 (531)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~  230 (531)
                       ..............++.+++.+.+.++.++.++..  ..+.+.  .+...+..+. +..+...      . ....+.+.
T Consensus       133 -~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~g~--~~~~~s~~~~-~~~~~~~g~~~~~~~~~~~~~~~  208 (520)
T 1s3e_A          133 -APWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTA--ETHEVSALWF-LWYVKQCGGTTRIISTTNGGQER  208 (520)
T ss_dssp             -CGGGSTTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSS--CTTTSBHHHH-HHHHHTTTCHHHHHCSTTSTTSE
T ss_pred             -CCccccchhhhhccCHHHHHHhhCCCHHHHHHHHHHHhhhcCC--ChHHhHHHHH-HHHHhhcCchhhhcccCCCcceE
Confidence             00000001123457888888888887777666552  223332  2233333222 1111100      0 01123334


Q ss_pred             cccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHH
Q 048009          231 YVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDF  310 (531)
Q Consensus       231 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~  310 (531)
                      ++.||+++|+++|++.+   |++|++|++|++|..++ +++. |++.+|+++.||+||+|+++.. +.+++..+.+|+..
T Consensus       209 ~~~gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~~-~~v~-v~~~~g~~~~ad~VI~a~p~~~-l~~l~~~p~lp~~~  282 (520)
T 1s3e_A          209 KFVGGSGQVSERIMDLL---GDRVKLERPVIYIDQTR-ENVL-VETLNHEMYEAKYVISAIPPTL-GMKIHFNPPLPMMR  282 (520)
T ss_dssp             EETTCTHHHHHHHHHHH---GGGEESSCCEEEEECSS-SSEE-EEETTSCEEEESEEEECSCGGG-GGGSEEESCCCHHH
T ss_pred             EEeCCHHHHHHHHHHHc---CCcEEcCCeeEEEEECC-CeEE-EEECCCeEEEeCEEEECCCHHH-HcceeeCCCCCHHH
Confidence            88999999999998755   78999999999999877 6665 8899998899999999999888 46776455688888


Q ss_pred             HHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCC
Q 048009          311 ILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVL  390 (531)
Q Consensus       311 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  390 (531)
                      .+.++++.+ .++.++++.++++. +.       +.  ...+.+++.++                  ..+..++..    
T Consensus       283 ~~~i~~~~~-~~~~kv~l~~~~~~-w~-------~~--~~~g~~~~~~~------------------~~~~~~~~d----  329 (520)
T 1s3e_A          283 NQMITRVPL-GSVIKCIVYYKEPF-WR-------KK--DYCGTMIIDGE------------------EAPVAYTLD----  329 (520)
T ss_dssp             HHHTTSCCB-CCEEEEEEECSSCG-GG-------GG--TEEEEEEECST------------------TCSCSEEEE----
T ss_pred             HHHHHhCCC-cceEEEEEEeCCCc-cc-------CC--CCCceeeccCC------------------CCceEEEee----
Confidence            889998887 68899999998752 21       00  11223333111                  112223222    


Q ss_pred             CCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHh----CCCCC
Q 048009          391 DKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREI----GLTGG  466 (531)
Q Consensus       391 d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~----~~~~G  466 (531)
                       ++..|.++.+++.++...+..    .|... .++++.+.+++.|++++|.-.       ..+|.++....    ....|
T Consensus       330 -~~~~~~~~~~l~~~~~~~~a~----~~~~~-~~~e~~~~vl~~L~~~~~~~~-------~~~p~~~~~~~W~~~~~~~G  396 (520)
T 1s3e_A          330 -DTKPEGNYAAIMGFILAHKAR----KLARL-TKEERLKKLCELYAKVLGSLE-------ALEPVHYEEKNWCEEQYSGG  396 (520)
T ss_dssp             -CCCTTSCSCEEEEEEETHHHH----HHTTS-CHHHHHHHHHHHHHHHHTCGG-------GGCCSEEEEEEGGGCTTTCS
T ss_pred             -CCCCCCCCCEEEEEccchhhh----hhhcC-CHHHHHHHHHHHHHHHhCccc-------cCCccEEEEEeeCCCCCCCC
Confidence             222233346666665322211    23321 258899999999999987521       12343332211    11233


Q ss_pred             cccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCC--CCCcCCc--hHHHHHHHHHHHhhh
Q 048009          467 NIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHP--GGGVMGA--PGRNAAGIVLQDLKK  528 (531)
Q Consensus       467 ~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~--g~g~~~~--sg~~aa~~i~~~~~~  528 (531)
                      ++.+ ...+.+...+++     ..++|++||||||+++..  .++++||  ||+.||++|++.+++
T Consensus       397 ~~~~-~~~~g~~~~~~~-----~l~~p~~~L~fAG~~t~~~~~g~v~GAi~SG~~aA~~i~~~l~~  456 (520)
T 1s3e_A          397 CYTT-YFPPGILTQYGR-----VLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGK  456 (520)
T ss_dssp             SSCB-CCCTTHHHHHGG-----GTTCCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCcc-ccCCCccccchH-----HHhCCCCCEEEeehhhcCcCcEEhHHHHHHHHHHHHHHHHHHhc
Confidence            3221 111122112333     456789999999999832  3478888  999999999998764

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.97  E-value=1.9e-30  Score=262.17  Aligned_cols=410  Identities=18%  Similarity=0.165  Sum_probs=233.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGET   91 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~   91 (531)
                      .++||+|||||++||+||++|+++|++|+|+|+++++||++.+.. .+|+.+|.|++++....+.+.+.    |+.....
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~   82 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDT-IDGAVLEIGGQWVSPDQTALISLLDELGLKTFER   82 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEE-ETTEEEECSCCCBCTTCHHHHHHHHHTTCCEEEC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccc-cCCceeccCCeEecCccHHHHHHHHHcCCccccc
Confidence            358999999999999999999999999999999999999998876 47899999987654333332222    4421100


Q ss_pred             hh---hhc-c-------------chhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHH
Q 048009           92 WN---EVV-E-------------AKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCL  154 (531)
Q Consensus        92 ~~---~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (531)
                      ..   .+. .             .........+......+......+...                              
T Consensus        83 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------  132 (453)
T 2yg5_A           83 YREGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIGAE------------------------------  132 (453)
T ss_dssp             CCCSEEEEECTTSCEEEECSSSCSCCHHHHHHHHHHHHHHHHHHHHHCSS------------------------------
T ss_pred             ccCCCEEEEeCCCceeeccCCCCCCChhhHHHHHHHHHHHHHHHhhcCCC------------------------------
Confidence            00   000 0             000000000000000000000000000                              


Q ss_pred             HHHHhcChhhHHHHHHHHhccHHHHhhcccCChhHHHHHhhhhhhccCC-CCC-CCChHHHHHHHHhhc--c----CCCC
Q 048009          155 RRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMS-SVH-TPGSGYVLLHHVMGE--T----DGNP  226 (531)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~-~~~-~~~~~~~~~~~~~~~--~----~~~~  226 (531)
                            ..........+...++.+++.+.+.++.++.++.... .+.+. .+. ..+..+ ++......  .    ....
T Consensus       133 ------~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~-~~~~~~~~g~~~~~~~~~~  204 (453)
T 2yg5_A          133 ------EPWAHPLARDLDTVSFKQWLINQSDDAEARDNIGLFI-AGGMLTKPAHSFSALQ-AVLMAASAGSFSHLVDEDF  204 (453)
T ss_dssp             ------CGGGSTTHHHHHSSBHHHHHHHHCSCHHHHHHHHHHH-CCCCCCSCTTSSBHHH-HHHHHHHTTCHHHHHCHHH
T ss_pred             ------CCCCCcchhhhhhccHHHHHHhhcCCHHHHHHHHHHH-HhhcccCCcccccHHH-HHHHhccCCcHhhhccCCC
Confidence                  0000001123356788888888888887777655321 11111 222 222222 22111100  0    0000


Q ss_pred             CccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCc-eeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCC
Q 048009          227 GIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGR-VNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNI  305 (531)
Q Consensus       227 ~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~-~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~  305 (531)
                      ..+.+++||++.++++|++.+   |++|++|++|++|..++ ++ +. |++ +|+++.||+||+|+++.. +.+|+..+.
T Consensus       205 ~~~~~~~gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~~-~~~v~-v~~-~~~~~~ad~VI~a~p~~~-~~~l~~~p~  277 (453)
T 2yg5_A          205 ILDKRVIGGMQQVSIRMAEAL---GDDVFLNAPVRTVKWNE-SGATV-LAD-GDIRVEASRVILAVPPNL-YSRISYDPP  277 (453)
T ss_dssp             HTCEEETTCTHHHHHHHHHHH---GGGEECSCCEEEEEEET-TEEEE-EET-TTEEEEEEEEEECSCGGG-GGGSEEESC
T ss_pred             cceEEEcCChHHHHHHHHHhc---CCcEEcCCceEEEEEeC-CceEE-EEE-CCeEEEcCEEEEcCCHHH-HhcCEeCCC
Confidence            123478999999999998754   78999999999999877 65 44 666 677899999999999887 467765556


Q ss_pred             CChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEE
Q 048009          306 LPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMT  385 (531)
Q Consensus       306 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      +|+...+.++++.+ .+++++++.++++. +.       +.  ...+.+ +..                   ..+...+.
T Consensus       278 lp~~~~~~i~~~~~-~~~~kv~l~~~~~~-w~-------~~--~~~g~~-~~~-------------------~~~~~~~~  326 (453)
T 2yg5_A          278 LPRRQHQMHQHQSL-GLVIKVHAVYETPF-WR-------ED--GLSGTG-FGA-------------------SEVVQEVY  326 (453)
T ss_dssp             CCHHHHHHGGGEEE-CCEEEEEEEESSCG-GG-------GG--TEEEEE-ECT-------------------TSSSCEEE
T ss_pred             CCHHHHHHHhcCCC-cceEEEEEEECCCC-CC-------CC--CCCcee-ecC-------------------CCCeEEEE
Confidence            88888888998888 57899999998742 21       00  011222 211                   11222222


Q ss_pred             eCCCCCCCCCCCC-ceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHh---
Q 048009          386 IPSVLDKTISPPG-NHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREI---  461 (531)
Q Consensus       386 ~~s~~d~~~ap~G-~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~---  461 (531)
                      .++      .|+| +.++++++......    .|.. ..++++.+.+++.|++++|.-        ..+|.++....   
T Consensus       327 ~~~------~~~~~~~~l~~~~~~~~~~----~~~~-~~~~~~~~~~l~~L~~~~~~~--------~~~p~~~~~~~W~~  387 (453)
T 2yg5_A          327 DNT------NHEDDRGTLVAFVSDEKAD----AMFE-LSAEERKATILASLARYLGPK--------AEEPVVYYESDWGS  387 (453)
T ss_dssp             ECC------CTTCSSEEEEEEEEHHHHH----HHHH-SCHHHHHHHHHHHHHHHHCGG--------GGCCSEEEECCTTT
T ss_pred             eCC------CCCCCCCEEEEEeccHHHH----HHhc-CCHHHHHHHHHHHHHHHhCcc--------CCCccEEEEeecCC
Confidence            222      3444 45666654321111    2321 124788899999999998741        12343332111   


Q ss_pred             -CCCCCcccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCC--CCCcCCc--hHHHHHHHHHHHhh
Q 048009          462 -GLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHP--GGGVMGA--PGRNAAGIVLQDLK  527 (531)
Q Consensus       462 -~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~--g~g~~~~--sg~~aa~~i~~~~~  527 (531)
                       ....|++. ....+.+...+++     ..++|++||||||+++.+  .++++||  ||+.||++|++.++
T Consensus       388 ~~~~~G~~~-~~~~~g~~~~~~~-----~~~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~  452 (453)
T 2yg5_A          388 EEWTRGCYA-ASFDLGGLHRYGA-----DSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIARSK  452 (453)
T ss_dssp             CTTTCSSSC-EEECTTHHHHHGG-----GTTCCBTTEEECCGGGCSTTTTSHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCCCc-CcCCCCccccchH-----HHhCCcCceEEeecccccccccchHHHHHHHHHHHHHHHHHhc
Confidence             11223321 1111111111233     457789999999999842  2378888  99999999998764

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.97  E-value=1.4e-30  Score=265.02  Aligned_cols=417  Identities=14%  Similarity=0.142  Sum_probs=229.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGET   91 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~   91 (531)
                      ..+||+|||||++||+||+.|+++|++|+|+|+++++||++.+.. ..|+.+|.|++++....+.+.+.    |+.....
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~-~~g~~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~   93 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHA-LAGYLVEQGPNSFLDREPATRALAAALNLEGRIR   93 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEE-ETTEEEESSCCCEETTCHHHHHHHHHTTCGGGEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeec-cCCeeeecChhhhhhhhHHHHHHHHHcCCcceee
Confidence            468999999999999999999999999999999999999999976 57999999988765434433322    5432111


Q ss_pred             hhh------h-ccchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhh
Q 048009           92 WNE------V-VEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKD  164 (531)
Q Consensus        92 ~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (531)
                      ...      + ........++.   ..       ..++....       ..+.++..           .+......... 
T Consensus        94 ~~~~~~~~~~~~~~g~~~~~p~---~~-------~~~~~~~~-------~~~~~~~~-----------~~~~~~~~~~~-  144 (478)
T 2ivd_A           94 AADPAAKRRYVYTRGRLRSVPA---SP-------PAFLASDI-------LPLGARLR-----------VAGELFSRRAP-  144 (478)
T ss_dssp             CSCSSCCCEEEEETTEEEECCC---SH-------HHHHTCSS-------SCHHHHHH-----------HHGGGGCCCCC-
T ss_pred             ecCccccceEEEECCEEEECCC---CH-------HHhccCCC-------CCHHHHHH-----------HhhhhhcCCCC-
Confidence            000      0 00000000000   00       00000000       00000000           00000000000 


Q ss_pred             HHHHHHHHhccHHHHhhcccCChhHHHHHhh--hhhhccCCCCCCCChHHH--H-----------HHHHhhc----c---
Q 048009          165 LVEFVDLLLSPASKVLNKWFETDVLKATLAT--DAVIGTMSSVHTPGSGYV--L-----------LHHVMGE----T---  222 (531)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~~g~~~~~~~~~~~~~--~-----------~~~~~~~----~---  222 (531)
                           .....++.+++.+.+.++.++..+..  ..+.+.  .+........  .           +..+...    .   
T Consensus       145 -----~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (478)
T 2ivd_A          145 -----EGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAG--DVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAA  217 (478)
T ss_dssp             -----TTCCCBHHHHHHHHTCHHHHHHTHHHHHHHHHCC--CTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC-
T ss_pred             -----CCCCCCHHHHHHHhhCHHHHHHHHHHHhceeecC--CHHHhhHHHHhHHHHHHHHhcCcHHHHHHHhhhcccccc
Confidence                 01223455555554444433333321  111111  1111111110  0           0000000    0   


Q ss_pred             --CCCC----CccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCcEEEcCeEEecCCh
Q 048009          223 --DGNP----GIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGAQVHSSIVLSNATP  293 (531)
Q Consensus       223 --~~~~----~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~~~~ad~VV~aa~~  293 (531)
                        ....    +.+.+++||++.|+++|++.+   |++|+++++|++|..++ ++ +.|++   .+|+++.||+||+|+++
T Consensus       218 ~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~~-~~-~~v~~~~~~~g~~~~ad~vV~a~~~  292 (478)
T 2ivd_A          218 LPAGTAPKLSGALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLARED-GG-WRLIIEEHGRRAELSVAQVVLAAPA  292 (478)
T ss_dssp             ---CCSCCCCCCEEEETTCTHHHHHHHHHHH---GGGEESSEEEEEEECC---C-CEEEEEETTEEEEEECSEEEECSCH
T ss_pred             CcccccccccccEEEECCCHHHHHHHHHHHh---hhhEEcCCEEEEEEecC-Ce-EEEEEeecCCCceEEcCEEEECCCH
Confidence              0011    334489999999999998876   67999999999999877 55 45887   67878999999999998


Q ss_pred             HhHHhhcCCCCCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHc
Q 048009          294 YKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVN  373 (531)
Q Consensus       294 ~~~~~~ll~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (531)
                      +.+ .+|+++  +++...+.++++++ .+++++++.++++. +.       .  +...+ +.++..              
T Consensus       293 ~~~-~~ll~~--l~~~~~~~l~~~~~-~~~~~v~l~~~~~~-~~-------~--~~~~~-~~~~~~--------------  343 (478)
T 2ivd_A          293 HAT-AKLLRP--LDDALAALVAGIAY-APIAVVHLGFDAGT-LP-------A--PDGFG-FLVPAE--------------  343 (478)
T ss_dssp             HHH-HHHHTT--TCHHHHHHHHTCCB-CCEEEEEEEECTTS-SC-------C--CCSSE-EECCGG--------------
T ss_pred             HHH-HHHhhc--cCHHHHHHHhcCCC-CcEEEEEEEEcccc-CC-------C--CCceE-EEecCC--------------
Confidence            884 677754  78888888999988 58899999998753 21       1  11222 222110              


Q ss_pred             CCCCCCCeEEEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecC
Q 048009          374 GLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLT  453 (531)
Q Consensus       374 ~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~t  453 (531)
                         ...+...+.+++..++.++|+|+.++++++......    .|.. ..++++.+.+++.|++++|... .+....+  
T Consensus       344 ---~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~----~~~~-~~~~~~~~~~~~~l~~~~~~~~-~p~~~~~--  412 (478)
T 2ivd_A          344 ---EQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQP----GLVE-QDEDALAALAREELKALAGVTA-RPSFTRV--  412 (478)
T ss_dssp             ---GCCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCG----GGGG-SCHHHHHHHHHHHHHHHHCCCS-CCSEEEE--
T ss_pred             ---CCCceEEEEEEcccCCCcCCCCCEEEEEEeCCcCCc----cccC-CCHHHHHHHHHHHHHHHhCCCC-CCcEEEE--
Confidence               112344566666667777888988888775422110    1211 1358899999999999998653 2221111  


Q ss_pred             cchHHHHhCCCCCc-ccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCc--hHHHHHHHHHHHhhhh
Q 048009          454 PPDLEREIGLTGGN-IFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVLQDLKKS  529 (531)
Q Consensus       454 p~~~~~~~~~~~G~-~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~~~~~~~  529 (531)
                       ..|      ..+. .|+.... .....+++     ..++ ++||||||+++ +|.|+++|  ||+.||+.|++.++.+
T Consensus       413 -~~w------~~~~p~~~~g~~-~~~~~~~~-----~~~~-~~~l~~aG~~~-~g~gv~gA~~SG~~aA~~i~~~l~~~  476 (478)
T 2ivd_A          413 -FRW------PLGIPQYNLGHL-ERVAAIDA-----ALQR-LPGLHLIGNAY-KGVGLNDCIRNAAQLADALVAGNTSH  476 (478)
T ss_dssp             -EEE------SSCCBCCBTTHH-HHHHHHHH-----HHHT-STTEEECSTTT-SCCSHHHHHHHHHHHHHHHCC-----
T ss_pred             -EEC------CCcccCCCcCHH-HHHHHHHH-----HHhh-CCCEEEEccCC-CCCCHHHHHHHHHHHHHHHHHhhccC
Confidence             111      1111 1211110 00000111     1122 68999999998 57789888  9999999998877653

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.97  E-value=8.1e-29  Score=253.02  Aligned_cols=418  Identities=17%  Similarity=0.146  Sum_probs=234.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccchh
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGETWN   93 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~~~   93 (531)
                      +||+|||||++||+||+.|+++|++|+|+|+++++||++.+.. ..|+.+|.|++++....+.+++.    |+...+...
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~~l~~lgl~~~~~~~  118 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSN-IDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPS  118 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEE-ETTEEEECSCCCBCTTSHHHHHHHHHTTCTTCEEES
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecc-cCCeeecCCCeEecCccHHHHHHHHHcCCcceeecc
Confidence            8999999999999999999999999999999999999999876 67999999998876556665544    652221111


Q ss_pred             h--------hc-cc--hhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcCh
Q 048009           94 E--------VV-EA--KSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQ  162 (531)
Q Consensus        94 ~--------~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (531)
                      .        +. ..  .....++. ......+...+..+....... ..   .+........                ..
T Consensus       119 ~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~----------------~~  177 (495)
T 2vvm_A          119 FNFSRGVNHFQLRTNPTTSTYMTH-EAEDELLRSALHKFTNVDGTN-GR---TVLPFPHDMF----------------YV  177 (495)
T ss_dssp             CCCSSSCCEEEEESSTTCCEEECH-HHHHHHHHHHHHHHHCSSSST-TT---TTCSCTTSTT----------------SS
T ss_pred             cccCCCceEEEecCCCCceeecCH-HHHHHHHHHHHHHHHccchhh-hh---hcCCCCCCcc----------------cC
Confidence            0        00 00  00000000 000111112222232210000 00   0000000000                00


Q ss_pred             hhHHHHHHHHhccHHHHhhccc--CChhHHHHHhhh--hhhccCCCCCCCChHHHHHHHHhhcc------CCCCCccccc
Q 048009          163 KDLVEFVDLLLSPASKVLNKWF--ETDVLKATLATD--AVIGTMSSVHTPGSGYVLLHHVMGET------DGNPGIWSYV  232 (531)
Q Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~--~~~~l~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  232 (531)
                         ..+..+...++.+++.+..  .++.++.++...  .+.+  ..+...+... ++.......      ....+.| ++
T Consensus       178 ---~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~-~~  250 (495)
T 2vvm_A          178 ---PEFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLCSG--GTLENSSFGE-FLHWWAMSGYTYQGCMDCLMSY-KF  250 (495)
T ss_dssp             ---TTHHHHHTSBHHHHHHHHGGGCCHHHHHHHHHHHHHHHS--SCTTTSBHHH-HHHHHHHTTSSHHHHHHHHHSE-EE
T ss_pred             ---cchhhhhhhhHHHHHHHhhccCCHHHHHHHHHHHHHhcC--CCcchhhHHH-HHHHHHHcCCCHHHHHhhhceE-Ee
Confidence               0012234556677776654  344444444311  1221  1223332222 222110000      0012334 68


Q ss_pred             cCchHHHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHHH
Q 048009          233 EGGMGSVSMAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFI  311 (531)
Q Consensus       233 ~gG~~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~  311 (531)
                      +||++.++++|.+.+++.| ++|+++++|++|..++ +++ .|++.+|+++.||+||+|+++..+ .++...+.+|+...
T Consensus       251 ~gG~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~-~~v-~v~~~~g~~~~ad~vI~a~~~~~l-~~i~~~p~lp~~~~  327 (495)
T 2vvm_A          251 KDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNER-DAA-RVTARDGREFVAKRVVCTIPLNVL-STIQFSPALSTERI  327 (495)
T ss_dssp             TTCHHHHHHHHHHHHHTTTCEEEESSCCEEEEEECS-SSE-EEEETTCCEEEEEEEEECCCGGGG-GGSEEESCCCHHHH
T ss_pred             CCCHHHHHHHHHHHhhhcCceEEEeCCEEEEEEEcC-CEE-EEEECCCCEEEcCEEEECCCHHHH-hheeeCCCCCHHHH
Confidence            9999999999999999998 9999999999999876 555 488889988999999999998884 56653445888888


Q ss_pred             HHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCC
Q 048009          312 LSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLD  391 (531)
Q Consensus       312 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d  391 (531)
                      +.++.+.+ .++.++++.++++. +.            .  ...+...                  +.+..++..     
T Consensus       328 ~ai~~~~~-~~~~kv~l~~~~~~-~~------------~--~~g~~~~------------------~~~~~~~~~-----  368 (495)
T 2vvm_A          328 SAMQAGHV-SMCTKVHAEVDNKD-MR------------S--WTGIAYP------------------FNKLCYAIG-----  368 (495)
T ss_dssp             HHHHHCCC-CCCEEEEEEESCGG-GG------------G--EEEEECS------------------SCSSCEEEE-----
T ss_pred             HHHHhcCC-CceeEEEEEECCcc-CC------------C--ceeEecC------------------CCCcEEEec-----
Confidence            88988887 67789999998732 11            1  1111000                  011111111     


Q ss_pred             CCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCCCCCccccc
Q 048009          392 KTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHG  471 (531)
Q Consensus       392 ~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~~~G~~~~~  471 (531)
                      ....|.|+.+++.++. . ..    .+.+    ++..+.+++.|++++|+..+ +....+   ..|.+.. ...|++-. 
T Consensus       369 ~~~~~~~~~vl~~~~~-~-~~----~~~~----~e~~~~~~~~L~~~~~~~~~-~~~~~~---~~W~~dp-~~~g~y~~-  432 (495)
T 2vvm_A          369 DGTTPAGNTHLVCFGN-S-AN----HIQP----DEDVRETLKAVGQLAPGTFG-VKRLVF---HNWVKDE-FAKGAWFF-  432 (495)
T ss_dssp             EEECTTSCEEEEEEEC-S-TT----CCCT----TTCHHHHHHHHHTTSTTSCC-EEEEEE---CCTTTCT-TTSSSSCC-
T ss_pred             CCCCCCCCeEEEEEeC-c-cc----cCCC----HHHHHHHHHHHHHhcCCCCC-ceEEEE---eEcCCCC-CCCCCccC-
Confidence            1124556666666542 1 11    1232    23456678889999886432 221111   1232111 11122110 


Q ss_pred             CCCccccccCCCCCCCCCCCCCCCCeeecCCCCCC--CCCcCCc--hHHHHHHHHHHHhhh
Q 048009          472 AMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHP--GGGVMGA--PGRNAAGIVLQDLKK  528 (531)
Q Consensus       472 ~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~--g~g~~~~--sg~~aa~~i~~~~~~  528 (531)
                       ..+.+....++     ..++|++||||||+++.+  .+.+.||  ||+.||++|++.+++
T Consensus       433 -~~~g~~~~~~~-----~l~~p~~~l~fAGe~t~~~~~g~veGAi~SG~raA~~i~~~l~~  487 (495)
T 2vvm_A          433 -SRPGMVSECLQ-----GLREKHGGVVFANSDWALGWRSFIDGAIEEGTRAARVVLEELGT  487 (495)
T ss_dssp             -CCTTHHHHHHH-----HHHCCBTTEEECCGGGCSSSTTSHHHHHHHHHHHHHHHHHHHCC
T ss_pred             -cCCCcchhhHH-----HHhCcCCCEEEechhhhcCCceEEEhHHHHHHHHHHHHHHHhcc
Confidence             11111100111     234568999999999964  3556777  999999999998754

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.96  E-value=5.9e-29  Score=252.82  Aligned_cols=241  Identities=14%  Similarity=0.166  Sum_probs=151.3

Q ss_pred             ccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCC
Q 048009          228 IWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILP  307 (531)
Q Consensus       228 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~  307 (531)
                      .+.+++||++.|+++|++.+.+  ++|+++++|++|..++ +++ .|++.+|+++.||+||+|++++.+ .++++...  
T Consensus       226 ~~~~~~~g~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~-~~~-~v~~~~g~~~~ad~vi~a~p~~~~-~~l~~~~~--  298 (470)
T 3i6d_A          226 QFQTLSTGLQTLVEEIEKQLKL--TKVYKGTKVTKLSHSG-SCY-SLELDNGVTLDADSVIVTAPHKAA-AGMLSELP--  298 (470)
T ss_dssp             -EEEETTCTHHHHHHHHHTCCS--EEEECSCCEEEEEECS-SSE-EEEESSSCEEEESEEEECSCHHHH-HHHTTTST--
T ss_pred             eEEEeCChHHHHHHHHHHhcCC--CEEEeCCceEEEEEcC-CeE-EEEECCCCEEECCEEEECCCHHHH-HHHcCCch--
Confidence            4457899999999999886654  7999999999999887 554 488999988999999999998884 67775532  


Q ss_pred             hHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeC
Q 048009          308 DDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIP  387 (531)
Q Consensus       308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (531)
                        ....++.+++ .++.++++.++++. +.        ......+.+.. .+                 ...+...+.+.
T Consensus       299 --~~~~~~~~~~-~~~~~v~l~~~~~~-~~--------~~~~~~g~l~~-~~-----------------~~~~~~~~~~~  348 (470)
T 3i6d_A          299 --AISHLKNMHS-TSVANVALGFPEGS-VQ--------MEHEGTGFVIS-RN-----------------SDFAITACTWT  348 (470)
T ss_dssp             --THHHHHTCEE-EEEEEEEEEESSTT-CC--------CSSCSSEEEEC-ST-----------------TCCSEEEEEEH
T ss_pred             --hhHHHhcCCC-CceEEEEEEECchh-cC--------CCCCCeEEEcc-CC-----------------CCCCceEEEEE
Confidence              2456777777 67899999998753 21        11112222222 11                 01123335555


Q ss_pred             CCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCCCCCc
Q 048009          388 SVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGN  467 (531)
Q Consensus       388 s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~~~G~  467 (531)
                      |...+..+|.|+.++.+++. .++.   ..+.. ...+++.+.+++.|++++|...+.+.......+..+..|   ..|.
T Consensus       349 s~~~~~~~p~~~~~l~~~~~-~~~~---~~~~~-~~~~~~~~~~~~~l~~~~g~~~~p~~~~~~~w~~a~p~~---~~g~  420 (470)
T 3i6d_A          349 NKKWPHAAPEGKTLLRAYVG-KAGD---ESIVD-LSDNDIINIVLEDLKKVMNINGEPEMTCVTRWHESMPQY---HVGH  420 (470)
T ss_dssp             HHHCGGGSCTTCEEEEEEEC-CSSC---CGGGT-SCHHHHHHHHHHHHGGGSCCCSCCSEEEEEEEEEEEEEC---BTTH
T ss_pred             cCcCCCcCCCCCEEEEEEEC-CCCC---ccccC-CCHHHHHHHHHHHHHHHhCCCCCceEEEEEEcCCccCCC---CCCH
Confidence            55556678888887777652 2221   11111 124889999999999999754322211111111111000   0010


Q ss_pred             ccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCc--hHHHHHHHHHHHh
Q 048009          468 IFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVLQDL  526 (531)
Q Consensus       468 ~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~~~~  526 (531)
                      .       .+...+++     ...++++|||+||+++. |.|+++|  ||+.+|++|++.+
T Consensus       421 ~-------~~~~~~~~-----~l~~~~~~l~~aG~~~~-g~gv~~a~~sG~~aA~~i~~~l  468 (470)
T 3i6d_A          421 K-------QRIKELRE-----ALASAYPGVYMTGASFE-GVGIPDCIDQGKAAVSDALTYL  468 (470)
T ss_dssp             H-------HHHHHHHH-----HHHHHSTTEEECSTTTS-CCSHHHHHHHHHHHHHHHHHHH
T ss_pred             H-------HHHHHHHH-----HHHhhCCCEEEEeecCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence            0       00001111     12245689999999985 6678887  9999999999876

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.95  E-value=9.1e-29  Score=253.33  Aligned_cols=426  Identities=16%  Similarity=0.162  Sum_probs=225.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGET   91 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~   91 (531)
                      ..+||+|||||++||+||+.|+++|++|+|+|+++++||++.+.. ..|+.+|.|++++....+.+.+.    |+.....
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~lgl~~~~~   90 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS-QDGLIWDEGANTMTESEGDVTFLIDSLGLREKQQ   90 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEE-ETTEEEESSCCCBCCCSHHHHHHHHHTTCGGGEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cCCeEEecCCcccccCcHHHHHHHHHcCCcccce
Confidence            358999999999999999999999999999999999999999876 67999999988765444443332    5532211


Q ss_pred             hhh-----h-ccchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhhH
Q 048009           92 WNE-----V-VEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDL  165 (531)
Q Consensus        92 ~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (531)
                      +..     + ........++.   ..   ..    +....       .....++.....       ..+    .......
T Consensus        91 ~~~~~~~~~~~~~g~~~~~p~---~~---~~----~~~~~-------~~~~~~~~~~~~-------~~~----~~~~~~~  142 (504)
T 1sez_A           91 FPLSQNKRYIARNGTPVLLPS---NP---ID----LIKSN-------FLSTGSKLQMLL-------EPI----LWKNKKL  142 (504)
T ss_dssp             CCSSCCCEEEESSSSEEECCS---SH---HH----HHHSS-------SSCHHHHHHHHT-------HHH----HC-----
T ss_pred             eccCCCceEEEECCeEEECCC---CH---HH----Hhccc-------cCCHHHHHHHhH-------hhh----ccCcccc
Confidence            100     0 00000000000   00   00    00000       000000000000       000    0000000


Q ss_pred             HHHHHHHhccHHHHhhcccCChhHHHHHhh--hhhhccCCCCCCCChHHH--HHHH---------------Hhhcc----
Q 048009          166 VEFVDLLLSPASKVLNKWFETDVLKATLAT--DAVIGTMSSVHTPGSGYV--LLHH---------------VMGET----  222 (531)
Q Consensus       166 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~~g~~~~~~~~~~~~~--~~~~---------------~~~~~----  222 (531)
                      .. ......++.+++.+.+.++.++.++..  ..+.+.  .+........  .+..               .+...    
T Consensus       143 ~~-~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  219 (504)
T 1sez_A          143 SQ-VSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGG--DPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKK  219 (504)
T ss_dssp             ------CCCBHHHHHHHHHCHHHHHTTHHHHHHHHHSC--CGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC------
T ss_pred             cc-cCCCCccHHHHHHHHcCHHHHHHHHHHHHccccCC--ChHHhhHHHHhHHHHHHHHHhCCHHHHHHHhhhccccccc
Confidence            00 011235666666666655544443331  112221  1111111100  0000               00000    


Q ss_pred             ----------CCCCCccccccCchHHHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCc-----eeEEEeC--CC---cE
Q 048009          223 ----------DGNPGIWSYVEGGMGSVSMAIGSAAREAG-AHIVTRAEVSQLMINDSGR-----VNGVQLA--DG---AQ  281 (531)
Q Consensus       223 ----------~~~~~~~~~~~gG~~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~-----~~~V~~~--~g---~~  281 (531)
                                ....+.+ +++||++.|+++|++.+   + ++|++|++|++|..++ ++     .+.|++.  +|   ++
T Consensus       220 ~~~~~~~~~~~~~~~~~-~~~GG~~~l~~~l~~~l---~~~~i~~~~~V~~I~~~~-~~~~~~~~~~v~~~~~~g~~~~~  294 (504)
T 1sez_A          220 QGPPKTSANKKRQRGSF-SFLGGMQTLTDAICKDL---REDELRLNSRVLELSCSC-TEDSAIDSWSIISASPHKRQSEE  294 (504)
T ss_dssp             ----CCCSCCSTTCSCB-EETTCTHHHHHHHHTTS---CTTTEETTCCEEEEEEEC-SSSSSSCEEEEEEBCSSSSCBCC
T ss_pred             ccccchhhccccCCceE-eeCcHHHHHHHHHHhhc---ccceEEcCCeEEEEEecC-CCCcccceEEEEEcCCCCcccee
Confidence                      0011334 88999999999998744   4 7899999999999877 44     1446664  45   56


Q ss_pred             EEcCeEEecCChHhHHhhcCCC---CCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECC
Q 048009          282 VHSSIVLSNATPYKTFMDLVPG---NILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGS  358 (531)
Q Consensus       282 ~~ad~VV~aa~~~~~~~~ll~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (531)
                      +.||+||+|+++..+ .+++.+   ..+++..   +..+++ .++.++++.++++. +.       .. .... .++++.
T Consensus       295 ~~ad~VI~a~p~~~l-~~ll~~~~~~~~~~~~---l~~~~~-~~~~~v~l~~~~~~-~~-------~~-~~~~-~~l~~~  359 (504)
T 1sez_A          295 ESFDAVIMTAPLCDV-KSMKIAKRGNPFLLNF---IPEVDY-VPLSVVITTFKREN-VK-------YP-LEGF-GVLVPS  359 (504)
T ss_dssp             CEESEEEECSCHHHH-HTSEEESSSSBCCCTT---SCCCCE-EEEEEEEEEEEGGG-BS-------SC-CCSS-EEECCG
T ss_pred             EECCEEEECCCHHHH-HHHhhcccCCcccHHH---HhcCCC-CceEEEEEEEchhh-cC-------CC-CCce-EEEcCC
Confidence            899999999998885 566621   1233322   455555 57889999988743 21       11 1222 233321


Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 048009          359 ESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEY  438 (531)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~  438 (531)
                      ...          ..|    .+...+.+++..+|..+|+|+.++++++......    .|... .++++.+.+++.|+++
T Consensus       360 ~~~----------~~g----~~~~~~~~~s~~~~~~~p~g~~~l~~~~~g~~~~----~~~~~-~~ee~~~~v~~~L~~~  420 (504)
T 1sez_A          360 KEQ----------QHG----LKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNR----ELAKA-SRTELKEIVTSDLKQL  420 (504)
T ss_dssp             GGG----------GGT----CCSSEEEEHHHHCGGGSCTTEEEEEEEEESTTCG----GGTTC-CHHHHHHHHHHHHHHH
T ss_pred             CCC----------CCC----CccceEEeeccccCCcCCCCCEEEEEEeCCCCcc----cccCC-CHHHHHHHHHHHHHHH
Confidence            100          011    1222344555667778899988887765422111    22221 2488999999999999


Q ss_pred             CCCCCCceeEEEecCcchHHHHhCCCCCcccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCc--hHH
Q 048009          439 APGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGA--PGR  516 (531)
Q Consensus       439 ~P~~~~~i~~~~~~tp~~~~~~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~--sg~  516 (531)
                      +|.-.+.+.......+..+..|   ..|  |. . ....   .+      ...++++||||||+++. |.++++|  ||+
T Consensus       421 ~g~~~~p~~~~~~~w~~~~p~~---~~g--~~-~-~~~~---~~------~~~~~~~~l~~aG~~~~-g~~v~gai~sG~  483 (504)
T 1sez_A          421 LGAEGEPTYVNHLYWSKAFPLY---GHN--YD-S-VLDA---ID------KMEKNLPGLFYAGNHRG-GLSVGKALSSGC  483 (504)
T ss_dssp             HCBCSCCSSEEEEEEEEEEECC---CTT--HH-H-HHHH---HH------HHHHHSTTEEECCSSSS-CSSHHHHHHHHH
T ss_pred             hCCCCCCeEEEEeECCCCCCcc---CcC--HH-H-HHHH---HH------HHHHhCCCEEEEeecCC-CCCHHHHHHHHH
Confidence            8752211111111111111111   001  00 0 0000   01      22356799999999996 6788887  999


Q ss_pred             HHHHHHHHHhhhh
Q 048009          517 NAAGIVLQDLKKS  529 (531)
Q Consensus       517 ~aa~~i~~~~~~~  529 (531)
                      .||++|++.++..
T Consensus       484 ~aA~~il~~l~~~  496 (504)
T 1sez_A          484 NAADLVISYLESV  496 (504)
T ss_dssp             HHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999987643

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.95  E-value=1.4e-27  Score=243.53  Aligned_cols=249  Identities=14%  Similarity=0.127  Sum_probs=160.4

Q ss_pred             CccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC---cEEEcCeEEecCChHhHHhhcCCC
Q 048009          227 GIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG---AQVHSSIVLSNATPYKTFMDLVPG  303 (531)
Q Consensus       227 ~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g---~~~~ad~VV~aa~~~~~~~~ll~~  303 (531)
                      ..+.+++||++.|+++|++.+.+  ++|++|++|++|..++ +++. |++.+|   +++.||+||+|+++.. +.+|.. 
T Consensus       229 ~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~-~~v~-v~~~~g~~~~~~~ad~vI~a~p~~~-l~~l~~-  302 (489)
T 2jae_A          229 MMMFTPVGGMDRIYYAFQDRIGT--DNIVFGAEVTSMKNVS-EGVT-VEYTAGGSKKSITADYAICTIPPHL-VGRLQN-  302 (489)
T ss_dssp             SSEEEETTCTTHHHHHHHHHHCG--GGEETTCEEEEEEEET-TEEE-EEEEETTEEEEEEESEEEECSCHHH-HTTSEE-
T ss_pred             ccEEeecCCHHHHHHHHHHhcCC--CeEEECCEEEEEEEcC-CeEE-EEEecCCeEEEEECCEEEECCCHHH-HHhCcc-
Confidence            34458999999999999887643  7899999999999887 6655 777776   5799999999998886 566654 


Q ss_pred             CCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEE
Q 048009          304 NILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIE  383 (531)
Q Consensus       304 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (531)
                       .+|+...+.+++++| .+++++++.++++. +.       +. ....|.+..                    ++.+...
T Consensus       303 -~l~~~~~~~l~~~~~-~~~~kv~l~~~~~~-w~-------~~-~~~~g~~~~--------------------~~~~~~~  351 (489)
T 2jae_A          303 -NLPGDVLTALKAAKP-SSSGKLGIEYSRRW-WE-------TE-DRIYGGASN--------------------TDKDISQ  351 (489)
T ss_dssp             -CCCHHHHHHHHTEEC-CCEEEEEEEESSCH-HH-------HT-TCCCSCEEE--------------------ESSTTCE
T ss_pred             -CCCHHHHHHHHhCCC-ccceEEEEEeCCCC-cc-------CC-CCccccccc--------------------CCCCceE
Confidence             488888889999988 57899999998742 21       00 011111111                    1224456


Q ss_pred             EEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCC-CCCceeEEEecCcchHHHHhC
Q 048009          384 MTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPG-FSSSIIGYDMLTPPDLEREIG  462 (531)
Q Consensus       384 ~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~-~~~~i~~~~~~tp~~~~~~~~  462 (531)
                      +.+++..++  .|+ ..++..++......    .|... .++++.+.+++.|++++|. +++.+....   +.+|.+...
T Consensus       352 ~~~~s~~~~--~~~-~~l~~~~~~g~~~~----~~~~~-~~~~~~~~~l~~L~~~~~~~~~~~~~~~~---~~~W~~~~~  420 (489)
T 2jae_A          352 IMFPYDHYN--SDR-GVVVAYYSSGKRQE----AFESL-THRQRLAKAIAEGSEIHGEKYTRDISSSF---SGSWRRTKY  420 (489)
T ss_dssp             EECCSSSTT--SSC-EEEEEEEEETHHHH----HHHTS-CHHHHHHHHHHHHHHHHCGGGGSSEEEEE---EEEGGGSTT
T ss_pred             EEeCCCCCC--CCC-CEEEEEeeCCchhh----hhhcC-CHHHHHHHHHHHHHHHcCcchhhhccccE---EEEcCCCCC
Confidence            777765442  232 23333343222111    23211 2488999999999999997 776665542   445655422


Q ss_pred             CCCCcccccCC----CccccccCCCCCCCCCCCCCCCCeeecCCCC-CCCCCcCCc--hHHHHHHHHHHHhhhh
Q 048009          463 LTGGNIFHGAM----GLDSLFLMRPVKGWSNYRTPLQGLYMCGSGT-HPGGGVMGA--PGRNAAGIVLQDLKKS  529 (531)
Q Consensus       463 ~~~G~~~~~~~----~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~-~~g~g~~~~--sg~~aa~~i~~~~~~~  529 (531)
                       ..|++.....    .+.+....++     ..++|++||||||+++ ++++++++|  ||+.||++|++.+..+
T Consensus       421 -~~G~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~l~faG~~~~~~~~~v~gAi~sg~~aA~~i~~~l~~~  488 (489)
T 2jae_A          421 -SESAWANWAGSGGSHGGAATPEYE-----KLLEPVDKIYFAGDHLSNAIAWQHGALTSARDVVTHIHERVAQE  488 (489)
T ss_dssp             -TSCSSCEETTC-------CCHHHH-----HHTSCBTTEEECSGGGBSSTTSHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             -CCCcchhcccccCCCcccchhhHH-----HHhCCCCcEEEeEHHhccCccHHHHHHHHHHHHHHHHHHHHhhc
Confidence             2333221110    0111101111     2346789999999998 568889998  9999999999987654

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.95  E-value=3.3e-27  Score=239.26  Aligned_cols=245  Identities=16%  Similarity=0.162  Sum_probs=156.6

Q ss_pred             ccCchHHHHHHHHHHHHHc--------CcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC-
Q 048009          232 VEGGMGSVSMAIGSAAREA--------GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP-  302 (531)
Q Consensus       232 ~~gG~~~l~~~l~~~~~~~--------G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~-  302 (531)
                      ++||++.++++|.+.+.+.        |++|+++++|++|..++ +++. |++.+|+++.||+||+|+++..+ .+++. 
T Consensus       201 ~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~-~~v~-v~~~~g~~~~ad~vI~a~~~~~l-~~~~~~  277 (472)
T 1b37_A          201 DQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSP-GGVT-VKTEDNSVYSADYVMVSASLGVL-QSDLIQ  277 (472)
T ss_dssp             CTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECS-SCEE-EEETTSCEEEESEEEECSCHHHH-HTTSSE
T ss_pred             cCCcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEEcC-CcEE-EEECCCCEEEcCEEEEecCHHHh-ccCCee
Confidence            4899999999999887765        78999999999999887 6665 89999988999999999998885 44332 


Q ss_pred             -CCCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCe
Q 048009          303 -GNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPI  381 (531)
Q Consensus       303 -~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (531)
                       .+.+|+.+.++++.+.+ .++.++++.++++. +.       + .+.. +.+...+..            .+    ...
T Consensus       278 ~~p~Lp~~~~~ai~~~~~-~~~~kv~l~~~~~~-w~-------~-~~~~-~~~~~~~~~------------~~----~~~  330 (472)
T 1b37_A          278 FKPKLPTWKVRAIYQFDM-AVYTKIFLKFPRKF-WP-------E-GKGR-EFFLYASSR------------RG----YYG  330 (472)
T ss_dssp             EESCCCHHHHHHHHHSEE-ECEEEEEEECSSCC-SC-------C-STTC-SEEEECCSS------------TT----SSC
T ss_pred             ECCCCCHHHHHHHHhcCC-cceeEEEEECCCcC-CC-------C-CCCc-ceEEecccC------------Cc----cce
Confidence             35588888889998887 57789999998742 21       1 1111 122221110            01    011


Q ss_pred             EEEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCC--CceeEEEecCcchHHH
Q 048009          382 IEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFS--SSIIGYDMLTPPDLER  459 (531)
Q Consensus       382 ~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~--~~i~~~~~~tp~~~~~  459 (531)
                      ++...    |++ .| |..++.+++......    .|... .++++.+.+++.|++++|+..  +.+ ...+.++.+.  
T Consensus       331 ~~~~~----~~~-~p-~~~~l~~~~~~~~a~----~~~~~-~~~e~~~~~l~~L~~~~Pg~~~~~~~-~~~~~~W~~~--  396 (472)
T 1b37_A          331 VWQEF----EKQ-YP-DANVLLVTVTDEESR----RIEQQ-SDEQTKAEIMQVLRKMFPGKDVPDAT-DILVPRWWSD--  396 (472)
T ss_dssp             EEEEC----TTT-ST-TCCEEEEEEEHHHHH----HHHTS-CHHHHHHHHHHHHHHHCTTSCCCCCS-EEECCCTTTC--
T ss_pred             eeecc----cCC-CC-CCCEEEEEechHHHH----HHHhC-CHHHHHHHHHHHHHHHcCCCCCCCCc-eEEecccCCC--
Confidence            22221    333 34 556666654311100    12111 258999999999999999853  333 2233333221  


Q ss_pred             HhCCCCCcccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCC--CCCcCCc--hHHHHHHHHHHHhhhh
Q 048009          460 EIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHP--GGGVMGA--PGRNAAGIVLQDLKKS  529 (531)
Q Consensus       460 ~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~--g~g~~~~--sg~~aa~~i~~~~~~~  529 (531)
                        ....|++.........  ..++     ..++|++||||||+++++  +++++||  ||+.||++|++.+++.
T Consensus       397 --~~~~G~~~~~~~g~~~--~~~~-----~l~~p~~~l~fAG~~t~~~~~g~v~GA~~SG~~aA~~i~~~l~~~  461 (472)
T 1b37_A          397 --RFYKGTFSNWPVGVNR--YEYD-----QLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKK  461 (472)
T ss_dssp             --TTTSSSEEECBTTCCH--HHHH-----HHHCCBTTEEECSGGGCTTTTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             --CCCCcccCCCCCCCCh--hHHH-----HHhccCCcEEEeecccCCCCCCchhHHHHHHHHHHHHHHHHHHhC
Confidence              1123432211111110  0112     456789999999999987  5678888  9999999999987653

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.95  E-value=4e-27  Score=239.60  Aligned_cols=243  Identities=15%  Similarity=0.120  Sum_probs=149.6

Q ss_pred             cccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHH
Q 048009          231 YVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDF  310 (531)
Q Consensus       231 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~  310 (531)
                      +++||++.++++|++.++++|++|+++++|++|..++ ++++.|++ ++.++.||+||+|++++.+ .+|+++  .++..
T Consensus       228 ~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~-~~~~~v~~-~~~~~~ad~vv~a~p~~~~-~~ll~~--~~~~~  302 (477)
T 3nks_A          228 SLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQA-EGRWKVSL-RDSSLEADHVISAIPASVL-SELLPA--EAAPL  302 (477)
T ss_dssp             EETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEECG-GGCEEEEC-SSCEEEESEEEECSCHHHH-HHHSCG--GGHHH
T ss_pred             EECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEcC-CceEEEEE-CCeEEEcCEEEECCCHHHH-HHhccc--cCHHH
Confidence            8899999999999999999999999999999999876 55455766 4556999999999998884 778765  45667


Q ss_pred             HHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCC
Q 048009          311 ILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVL  390 (531)
Q Consensus       311 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  390 (531)
                      .+.+.++++ .++.++++.++++. ++          ....|.+.. ..                 .....+.+.+.|..
T Consensus       303 ~~~l~~~~~-~~~~~v~l~~~~~~-~~----------~~~~g~l~~-~~-----------------~~~~~~~~~~~s~~  352 (477)
T 3nks_A          303 ARALSAITA-VSVAVVNLQYQGAH-LP----------VQGFGHLVP-SS-----------------EDPGVLGIVYDSVA  352 (477)
T ss_dssp             HHHHHTCCE-EEEEEEEEEETTCC-CS----------SCSSEEECC-TT-----------------TCSSEEEEECHHHH
T ss_pred             HHHHhcCCC-CcEEEEEEEECCCC-CC----------CCCceEEcc-CC-----------------CCCCceEEEEeccc
Confidence            788888887 67788999998742 21          112222221 11                 01234445555544


Q ss_pred             CCCCC-CCCceEEEEEeccccCC-CCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCCCCCcc
Q 048009          391 DKTIS-PPGNHVINLFIQYTPYK-PSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNI  468 (531)
Q Consensus       391 d~~~a-p~G~~~l~~~~~~~~~~-~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~~~G~~  468 (531)
                      .|... |+|+.++++++....+. ..+..|..  .++++.+.+++.|+++++...+.........+..+..|      ..
T Consensus       353 ~~~~~~~~~~~~l~~~~gg~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~~g~~~~~~~~~v~rw~~a~p~~------~~  424 (477)
T 3nks_A          353 FPEQDGSPPGLRVTVMLGGSWLQTLEASGCVL--SQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQY------TL  424 (477)
T ss_dssp             CGGGSTTTTCEEEEEEECHHHHHHHHHSSCCC--CHHHHHHHHHHHHHHHHCCCSCCSEEEEEEEEEEEECC------BT
T ss_pred             cCCCCCCCCceEEEEEECCccccccccccCCC--CHHHHHHHHHHHHHHHhCCCCCCcEEEEEEcCCccCCC------CC
Confidence            45433 44788887775422111 00001211  24889999999999987432221111111112111111      11


Q ss_pred             cccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCc--hHHHHHHHHHHHh
Q 048009          469 FHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVLQDL  526 (531)
Q Consensus       469 ~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~~~~  526 (531)
                      .+. .....   .+.     ......+|||+||+|. .|.|+++|  ||+.||++|+.+.
T Consensus       425 g~~-~~~~~---~~~-----~l~~~~~~l~l~G~~~-~G~gv~~a~~sg~~aA~~il~~~  474 (477)
T 3nks_A          425 GHW-QKLES---ARQ-----FLTAHRLPLTLAGASY-EGVAVNDCIESGRQAAVSVLGTE  474 (477)
T ss_dssp             THH-HHHHH---HHH-----HHHHTTCSEEECSTTT-SCCSHHHHHHHHHHHHHHHHHCC
T ss_pred             CHH-HHHHH---HHH-----HHHhcCCCEEEEccCC-CCCcHHHHHHHHHHHHHHHHhcc
Confidence            000 00000   000     0001136899999997 68899988  9999999998753

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.95  E-value=1.6e-27  Score=242.29  Aligned_cols=239  Identities=14%  Similarity=0.193  Sum_probs=148.9

Q ss_pred             CccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCC
Q 048009          227 GIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNIL  306 (531)
Q Consensus       227 ~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~  306 (531)
                      +.+.+++||++.++++|++.+.+  ++|+++++|++|..++ +++. |++.+| ++.||+||+|++++.+ .+|++...+
T Consensus       226 ~~~~~~~~G~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~-~~~~-v~~~~g-~~~ad~vV~a~p~~~~-~~ll~~~~~  299 (475)
T 3lov_A          226 GQFLSLETGLESLIERLEEVLER--SEIRLETPLLAISRED-GRYR-LKTDHG-PEYADYVLLTIPHPQV-VQLLPDAHL  299 (475)
T ss_dssp             CSEEEETTCHHHHHHHHHHHCSS--CEEESSCCCCEEEEET-TEEE-EECTTC-CEEESEEEECSCHHHH-HHHCTTSCC
T ss_pred             CcEEeeCChHHHHHHHHHhhccC--CEEEcCCeeeEEEEeC-CEEE-EEECCC-eEECCEEEECCCHHHH-HHHcCccCH
Confidence            44558999999999999887754  7999999999999877 6554 888889 6999999999998884 678765433


Q ss_pred             ChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEe
Q 048009          307 PDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTI  386 (531)
Q Consensus       307 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                           ..+..+++ .++.++++.++++...          .....+.+.. .+                 .......+++
T Consensus       300 -----~~~~~~~~-~~~~~v~l~~~~~~~~----------~~~g~g~l~~-~~-----------------~~~~~~~~~~  345 (475)
T 3lov_A          300 -----PELEQLTT-HSTATVTMIFDQQQSL----------PIEGTGFVVN-RR-----------------APYSITACTA  345 (475)
T ss_dssp             -----HHHHTCCE-EEEEEEEEEEECCSSC----------SSSSSEEEEC-TT-----------------SSCSEEEEEE
T ss_pred             -----HHHhcCCC-CeEEEEEEEECCcCCC----------CCCCEEEEec-CC-----------------CCCceEEEEE
Confidence                 56677777 6789999999875411          0122222222 11                 1123344566


Q ss_pred             CCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHh-CCCC
Q 048009          387 PSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREI-GLTG  465 (531)
Q Consensus       387 ~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~-~~~~  465 (531)
                      .+...+...|. +.++.+++. .+..   ..+.. ...+++.+.+++.|+++++.-. ......+   ..|..-. ....
T Consensus       346 ~s~~~~~~~p~-~~~l~~~~~-~~~~---~~~~~-~~~e~~~~~~~~~L~~~~g~~~-~p~~~~v---~~w~~a~p~~~~  415 (475)
T 3lov_A          346 IDQKWNHSAPD-HTVLRAFVG-RPGN---DHLVH-ESDEVLQQAVLQDLEKICGRTL-EPKQVII---SRLMDGLPAYTV  415 (475)
T ss_dssp             HHHHCTTTCTT-EEEEEEEEC-BTTB---CGGGG-SCHHHHHHHHHHHHHHHHSSCC-CCSEEEE---EEEEEEEECCCT
T ss_pred             EcccCCCCCCC-cEEEEEEeC-CCCC---CcccC-CCHHHHHHHHHHHHHHHhCCCC-CCeEEEE---EEcccCCCCCCC
Confidence            66666777777 666666642 2211   01111 1247899999999999986422 2211111   1111100 0011


Q ss_pred             CcccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCc--hHHHHHHHHHHHhhh
Q 048009          466 GNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVLQDLKK  528 (531)
Q Consensus       466 G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~~~~~~  528 (531)
                      |..       ......++     ...++++||||||+++. |.|+++|  ||+.+|++|++.++.
T Consensus       416 g~~-------~~~~~~~~-----~l~~~~~~l~~aG~~~~-g~g~~~a~~sG~~aA~~i~~~l~~  467 (475)
T 3lov_A          416 GHA-------DRIQRVRE-----EVLAQYPGIYLAGLAYD-GVGLPDCVASAKTMIESIELEQSH  467 (475)
T ss_dssp             THH-------HHHHHHHH-----HHHHHSTTEEECSTTTS-CSSHHHHHHHHHHHHHHHHHTC--
T ss_pred             ChH-------HHHHHHHH-----HHHhhCCCEEEEccCCC-CCCHHHHHHHHHHHHHHHHHHhhc
Confidence            100       00001111     12345789999999986 5678888  999999999987754

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.94  E-value=3e-26  Score=235.43  Aligned_cols=93  Identities=18%  Similarity=0.265  Sum_probs=76.2

Q ss_pred             cccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHH
Q 048009          231 YVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDF  310 (531)
Q Consensus       231 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~  310 (531)
                      .++||++.|+++|++.+++.|++|+++++|++|..++ ++   |++.||+++.||+||+|+++.. +.+++++    +..
T Consensus       216 ~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~-~~---v~~~~G~~~~ad~vI~t~P~~~-l~~~l~~----~~~  286 (513)
T 4gde_A          216 PARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNANN-KT---VTLQDGTTIGYKKLVSTMAVDF-LAEAMND----QEL  286 (513)
T ss_dssp             ESSSHHHHHHHHHHHTSCGGGEEESGGGCEEEEETTT-TE---EEETTSCEEEEEEEEECSCHHH-HHHHTTC----HHH
T ss_pred             cccCCHHHHHHHHHHHHHhcCeeeecceEEEEEEccC-CE---EEEcCCCEEECCEEEECCCHHH-HHHhcCc----hhh
Confidence            4589999999999999999999999999999999876 43   6689999999999999877776 5677643    345


Q ss_pred             HHHhhccCCCCCeEEEeeecCCC
Q 048009          311 ILSIKHSDYSSGTTKINLAVDKL  333 (531)
Q Consensus       311 ~~~i~~~~~~~~~~~~~~~~~~~  333 (531)
                      ......++| .++.+++++++..
T Consensus       287 ~~~~~~l~y-~~~~~v~l~~~~~  308 (513)
T 4gde_A          287 VGLTKQLFY-SSTHVIGVGVRGS  308 (513)
T ss_dssp             HHHHTTCCE-EEEEEEEEEEESS
T ss_pred             HhhhhcccC-CceEEEEEEEecc
Confidence            556677777 6778888888753

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.94  E-value=1.3e-25  Score=225.47  Aligned_cols=189  Identities=13%  Similarity=0.135  Sum_probs=122.9

Q ss_pred             HhccHHHHhhcccCChhHHHHHhhhhhhccCCCC-CCCChHHHH---HHHHhhccCCCCCccccccCchHHHHHHHHHHH
Q 048009          172 LLSPASKVLNKWFETDVLKATLATDAVIGTMSSV-HTPGSGYVL---LHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAA  247 (531)
Q Consensus       172 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~~  247 (531)
                      ...++.+++.+++.++.++..+............ ..+ ....+   ..+.........+.|.+|+||++.++++|++.+
T Consensus       174 ~~~s~~~~l~~~~~~~~l~~~l~~~~~l~~~~~~~~~p-~~~~~~~~~~~~~s~~~~~~~~~~~p~gG~~~l~~al~~~~  252 (453)
T 2bcg_G          174 DKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQP-ARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQGFARLS  252 (453)
T ss_dssp             TTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSB-HHHHHHHHHHHHHHHHHHSSCSEEEETTCTTHHHHHHHHHH
T ss_pred             ccCCHHHHHHHhCCCHHHHHHHHHHHHhccCccccCCc-hHHHHHHHHHHHHHHHhhcCCceEeeCCCHHHHHHHHHHHH
Confidence            3567788888888888888876532211100001 112 12211   222111111124567799999999999999999


Q ss_pred             HHcCcEEEcCcceeEEEec--CCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHHHHHhhccC-CCCCeE
Q 048009          248 REAGAHIVTRAEVSQLMIN--DSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSD-YSSGTT  324 (531)
Q Consensus       248 ~~~G~~i~~~~~V~~I~~~--~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i~~~~-~~~~~~  324 (531)
                      ++.|++|+++++|++|..+  + +++++|++ +|+++.||+||+|++++.  .++              .+.+ ++.+.+
T Consensus       253 ~~~G~~i~~~~~V~~i~~~~~~-~~~~~V~~-~g~~~~ad~VV~a~~~~~--~~l--------------~~~~~~~~~~~  314 (453)
T 2bcg_G          253 AIYGGTYMLDTPIDEVLYKKDT-GKFEGVKT-KLGTFKAPLVIADPTYFP--EKC--------------KSTGQRVIRAI  314 (453)
T ss_dssp             HHTTCEEECSCCCCEEEEETTT-TEEEEEEE-TTEEEECSCEEECGGGCG--GGE--------------EEEEEEEEEEE
T ss_pred             HHcCCEEECCCEEEEEEEECCC-CeEEEEEE-CCeEEECCEEEECCCccc--hhh--------------cccCCcceeEE
Confidence            9999999999999999987  6 88888887 477899999999999885  222              1222 334445


Q ss_pred             EEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCCCCCceEEEE
Q 048009          325 KINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINL  404 (531)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~  404 (531)
                      ++   ++++.+..        ....|+ .+.++.               +..+.++.++++.+|..| ++||+|++++++
T Consensus       315 ~i---~~~~~~~~--------~~~~~~-~ii~~~---------------~~~~~~~~~~v~~~s~~d-~~aP~G~~~~~v  366 (453)
T 2bcg_G          315 CI---LNHPVPNT--------SNADSL-QIIIPQ---------------SQLGRKSDIYVAIVSDAH-NVCSKGHYLAII  366 (453)
T ss_dssp             EE---ESSCCTTS--------TTCSSE-EEEECG---------------GGTTCSSCEEEEEEEGGG-TSSCTTCEEEEE
T ss_pred             EE---EccccCCC--------CCCccE-EEEeCc---------------cccCCCCCEEEEEeCCCC-CCCCCCcEEEEE
Confidence            44   55532110        012232 455521               124567899999999988 899999999998


Q ss_pred             Eec
Q 048009          405 FIQ  407 (531)
Q Consensus       405 ~~~  407 (531)
                      ++.
T Consensus       367 ~~~  369 (453)
T 2bcg_G          367 STI  369 (453)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            864

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.93  E-value=9.5e-25  Score=223.06  Aligned_cols=435  Identities=16%  Similarity=0.055  Sum_probs=224.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccc-cCCeeecccchhhhcchhhhhhc----Cccccc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL-IPGFKFSRCSYLQSLLRPSLIKC----GTRIGE   90 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~-~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~   90 (531)
                      ..+||+|||||++||+||+.|+++|++|+|+|+++++||++.+... ..|+.+|.|++++....+.+.+.    |+....
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~  111 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLNE  111 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHHhCCCcee
Confidence            4689999999999999999999999999999999999999977642 46888999887654333222221    543110


Q ss_pred             c----hhhhc-cchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhhH
Q 048009           91 T----WNEVV-EAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDL  165 (531)
Q Consensus        91 ~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (531)
                      .    ..... ...........       ... ...+.. ............+.....+      .............  
T Consensus       112 ~~~~~~~~~~~~~g~~~~~~~~-------~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--  174 (498)
T 2iid_A          112 FSQENDNAWYFIKNIRKKVGEV-------KKD-PGLLKY-PVKPSEAGKSAGQLYEESL------GKVVEELKRTNCS--  174 (498)
T ss_dssp             ECSCCTTSEEEETTEEEEHHHH-------HHC-GGGGCC-CCCGGGTTCCHHHHHHHHT------HHHHHHHHHSCHH--
T ss_pred             ecccCCccEEEeCCeeeccccc-------ccC-cccccc-CCCccccCCCHHHHHHHHH------HHHHHHHhhccHH--
Confidence            0    00000 00000000000       000 000000 0000000000000000000      0000000000000  


Q ss_pred             HHHHHHHhccHHHHhhcccC-ChhHHHHHhhhhhhccCCCCCCCChHHHHHHHHhhccCCCCCccccccCchHHHHHHHH
Q 048009          166 VEFVDLLLSPASKVLNKWFE-TDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIG  244 (531)
Q Consensus       166 ~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~  244 (531)
                      .....+...+..+++..... +......+.  .+........  ......+.....  ......+.++.||+++|+++|+
T Consensus       175 ~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~gG~~~l~~~l~  248 (498)
T 2iid_A          175 YILNKYDTYSTKEYLIKEGDLSPGAVDMIG--DLLNEDSGYY--VSFIESLKHDDI--FAYEKRFDEIVDGMDKLPTAMY  248 (498)
T ss_dssp             HHHHHHTTSBHHHHHHHTSCCCHHHHHHHH--HHTTCGGGTT--SBHHHHHHHHHH--HTTCCCEEEETTCTTHHHHHHH
T ss_pred             HHHHHhhhhhHHHHHHHccCCCHHHHHHHH--HhcCcccchh--HHHHHHHHHHhc--cccCcceEEeCCcHHHHHHHHH
Confidence            01112234556666655321 222222221  0111000000  011111110000  0112334478999999999998


Q ss_pred             HHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc----EEEcCeEEecCChHhHHhhcCCCCCCChHHHHHhhccCCC
Q 048009          245 SAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA----QVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYS  320 (531)
Q Consensus       245 ~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~----~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i~~~~~~  320 (531)
                      +.+.+   +|++|++|++|..++ +++ .|++.+|+    ++.||+||+|+++.. +.++...+.+|+.+.++++++.| 
T Consensus       249 ~~l~~---~i~~~~~V~~I~~~~-~~v-~v~~~~~~~~~~~~~ad~vI~t~p~~~-~~~i~f~p~Lp~~~~~ai~~l~~-  321 (498)
T 2iid_A          249 RDIQD---KVHFNAQVIKIQQND-QKV-TVVYETLSKETPSVTADYVIVCTTSRA-VRLIKFNPPLLPKKAHALRSVHY-  321 (498)
T ss_dssp             HHTGG---GEESSCEEEEEEECS-SCE-EEEEECSSSCCCEEEESEEEECSCHHH-HTTSEEESCCCHHHHHHHHHCCE-
T ss_pred             Hhccc---ccccCCEEEEEEECC-CeE-EEEEecCCcccceEEeCEEEECCChHH-HhheecCCCCCHHHHHHHHhCCC-
Confidence            87754   799999999999887 665 47777765    479999999998886 46654334599999999999998 


Q ss_pred             CCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCCCCCce
Q 048009          321 SGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNH  400 (531)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~  400 (531)
                      .++.++++.++++. |.       +...  .+...+                    .+.+..++++++.    ..|.|..
T Consensus       322 ~~~~kv~l~~~~~~-w~-------~~~~--~~~~~~--------------------~~~~~~~~~~~s~----~~p~g~~  367 (498)
T 2iid_A          322 RSGTKIFLTCTTKF-WE-------DDGI--HGGKST--------------------TDLPSRFIYYPNH----NFTNGVG  367 (498)
T ss_dssp             ECEEEEEEEESSCG-GG-------GGTC--CSSEEE--------------------ESSTTCEEECCSS----CCTTSCE
T ss_pred             cceeEEEEEeCCCC-cc-------CCCc--cCCccc--------------------CCCCcceEEECCC----CCCCCCc
Confidence            56889999998742 21       1000  011111                    0113334555542    2467777


Q ss_pred             EEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeE-EEecCcchHHHHhCCCCCcccccCCCccccc
Q 048009          401 VINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIG-YDMLTPPDLEREIGLTGGNIFHGAMGLDSLF  479 (531)
Q Consensus       401 ~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~-~~~~tp~~~~~~~~~~~G~~~~~~~~~~~~~  479 (531)
                      +|..++......    .|... ..+++.+.+++.|+++++...+.+.. .....-.+|... ....|++....  +.+..
T Consensus       368 ~L~~~~~g~~a~----~~~~~-~~~~~~~~~l~~L~~~~g~~~~~~~~~~~~~~~~~W~~~-p~~~G~~~~~~--~~~~~  439 (498)
T 2iid_A          368 VIIAYGIGDDAN----FFQAL-DFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLD-KYAMGGITTFT--PYQFQ  439 (498)
T ss_dssp             EEEEEEEHHHHH----TTTTS-CHHHHHHHHHHHHHHHHTCCHHHHHHHEEEEEEEEGGGC-TTTCSSEECCC--TTHHH
T ss_pred             EEEEEeCCccHh----hhhcC-CHHHHHHHHHHHHHHHcCCChhhhhhhcCccEEEecCCC-CCCCceeeecC--CcchH
Confidence            777654211111    23221 23778999999999988621111100 000011233331 11223321111  11111


Q ss_pred             cCCCCCCCCCCCCCCCCeeecCCCCCC-CCCcCCc--hHHHHHHHHHHHhh
Q 048009          480 LMRPVKGWSNYRTPLQGLYMCGSGTHP-GGGVMGA--PGRNAAGIVLQDLK  527 (531)
Q Consensus       480 ~~rp~~~~~~~~t~~~~ly~aG~~~~~-g~g~~~~--sg~~aa~~i~~~~~  527 (531)
                      .+++     ..++|++||||||+++.. .++++||  ||+.||++|++.++
T Consensus       440 ~~~~-----~l~~p~~~l~fAGe~t~~~~g~~~GAi~SG~raA~~i~~~l~  485 (498)
T 2iid_A          440 HFSD-----PLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLASE  485 (498)
T ss_dssp             HHHH-----HHHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-----HHhCCCCcEEEEEcccccCCcCHHHHHHHHHHHHHHHHHHhc
Confidence            1121     234567999999999943 4567887  99999999998774

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.93  E-value=3.5e-24  Score=214.90  Aligned_cols=394  Identities=19%  Similarity=0.164  Sum_probs=204.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeeccc--ccCCeeecccchhhhcc-hhhhhhc----Ccccc
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEE--LIPGFKFSRCSYLQSLL-RPSLIKC----GTRIG   89 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~--~~~g~~~d~g~~~~~~~-~~~~~~~----gl~~~   89 (531)
                      ++||+|||||++||+||+.|+++|++|+|+|+++++||+|.+..  +.+|+.++.|+.+.... .+.+++.    |++..
T Consensus         1 ~~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~cipg~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   80 (431)
T 3k7m_X            1 MYDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKHHPRLAAELDRYGIPTA   80 (431)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSSSTTCEEESSCCCBCTTTCHHHHHHHHHHTCCEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccCCCCceEecCCeeeCCCCcHHHHHHHHHhCCeee
Confidence            37999999999999999999999999999999999999998654  56799999998765444 4433322    44211


Q ss_pred             cch---h--------hhccc--hhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHH
Q 048009           90 ETW---N--------EVVEA--KSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRR  156 (531)
Q Consensus        90 ~~~---~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (531)
                      ...   .        .+...  ...............+......+....+... ..   .                    
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~---~--------------------  136 (431)
T 3k7m_X           81 AASEFTSFRHRLGPTAVDQAFPIPGSEAVAVEAATYTLLRDAHRIDLEKGLEN-QD---L--------------------  136 (431)
T ss_dssp             ECCCCCEECCBSCTTCCSSSSCCCGGGHHHHHHHHHHHHHHHTTCCTTTCTTS-SS---C--------------------
T ss_pred             ecCCCCcEEEEecCCeecCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCccC-cc---h--------------------
Confidence            000   0        00000  0011111111111111111111100000000 00   0                    


Q ss_pred             HHhcChhhHHHHHHHHhccHHHHhhcccCChhHHHHHhh--hhhhccCCCCCCCChHHHHHHHHhhc--c--C-CCCCcc
Q 048009          157 AISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLAT--DAVIGTMSSVHTPGSGYVLLHHVMGE--T--D-GNPGIW  229 (531)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~--~--~-~~~~~~  229 (531)
                                  .... .+..+++......+..+..+..  ....+.  .....+... ++......  .  . ......
T Consensus       137 ------------~~~d-~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~  200 (431)
T 3k7m_X          137 ------------EDLD-IPLNEYVDKLDLPPVSRQFLLAWAWNMLGQ--PADQASALW-MLQLVAAHHYSILGVVLSLDE  200 (431)
T ss_dssp             ------------GGGC-SBHHHHHHHHTCCHHHHHHHHHHHHHHHSS--CTTTSBHHH-HHHHHHHTTSCHHHHHHTCCE
T ss_pred             ------------hhhc-CCHHHHHHhcCCCHHHHHHHHHHHHHhcCC--ChhhhhHHH-HHHHHHhcCCccceeecchhh
Confidence                        0001 2223333333333333322211  111111  111111111 11111000  0  0 000111


Q ss_pred             ccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChH
Q 048009          230 SYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDD  309 (531)
Q Consensus       230 ~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~  309 (531)
                       .+.+|+..+.+.+.+   +.| +|++|++|++|..++ +++. |++.+|+++.||+||+|+++.. +..+.-.+.+|..
T Consensus       201 -~~~~g~~~l~~~~~~---~~g-~i~~~~~V~~i~~~~-~~v~-v~~~~g~~~~ad~vi~a~~~~~-l~~i~~~p~l~~~  272 (431)
T 3k7m_X          201 -VFSNGSADLVDAMSQ---EIP-EIRLQTVVTGIDQSG-DVVN-VTVKDGHAFQAHSVIVATPMNT-WRRIVFTPALPER  272 (431)
T ss_dssp             -EETTCTHHHHHHHHT---TCS-CEESSCCEEEEECSS-SSEE-EEETTSCCEEEEEEEECSCGGG-GGGSEEESCCCHH
T ss_pred             -hcCCcHHHHHHHHHh---hCC-ceEeCCEEEEEEEcC-CeEE-EEECCCCEEEeCEEEEecCcch-HhheeeCCCCCHH
Confidence             468888888877753   556 999999999999877 6655 8888998899999999999887 4566434568888


Q ss_pred             HHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCC
Q 048009          310 FILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSV  389 (531)
Q Consensus       310 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  389 (531)
                      ..+.+....+ ....++++.++.+..                 .++...+                 +....++.+.+. 
T Consensus       273 ~~~~~~~~~~-~~~~kv~~~~~~~~~-----------------~i~~~~d-----------------~~~~~~~~~~~~-  316 (431)
T 3k7m_X          273 RRSVIEEGHG-GQGLKILIHVRGAEA-----------------GIECVGD-----------------GIFPTLYDYCEV-  316 (431)
T ss_dssp             HHHHHHHCCC-CCEEEEEEEEESCCT-----------------TEEEEBS-----------------SSSSEEEEEEEC-
T ss_pred             HHHHHHhCCC-cceEEEEEEECCCCc-----------------CceEcCC-----------------CCEEEEEeCcCC-
Confidence            8888887776 566899988876421                 1222111                 011222222221 


Q ss_pred             CCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCCCCCccc
Q 048009          390 LDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIF  469 (531)
Q Consensus       390 ~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~~~G~~~  469 (531)
                            +.+..++..+.....       ++.. . +   +.+.+.|++++|++. .+   .... ..|.... ...|++-
T Consensus       317 ------~~~~~~l~~~~~g~~-------~~~~-~-~---~~~~~~l~~~~~~~~-~~---~~~~-~~W~~d~-~~~G~~~  372 (431)
T 3k7m_X          317 ------SESERLLVAFTDSGS-------FDPT-D-I---GAVKDAVLYYLPEVE-VL---GIDY-HDWIADP-LFEGPWV  372 (431)
T ss_dssp             ------SSSEEEEEEEEETTT-------CCTT-C-H---HHHHHHHHHHCTTCE-EE---EEEC-CCTTTCT-TTSSSSC
T ss_pred             ------CCCCeEEEEEecccc-------CCCC-C-H---HHHHHHHHHhcCCCC-cc---EeEe-cccCCCC-CCCCCCC
Confidence                  124445544432111       1111 1 1   245677888898764 11   1111 2232211 1123321


Q ss_pred             ccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCC--CCCcCCc--hHHHHHHHHHHH
Q 048009          470 HGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHP--GGGVMGA--PGRNAAGIVLQD  525 (531)
Q Consensus       470 ~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~--g~g~~~~--sg~~aa~~i~~~  525 (531)
                      .  ..+.+....++     ..+.|..+|||||+.|..  .+.+.||  ||++||++|+..
T Consensus       373 ~--~~~g~~~~~~~-----~l~~p~g~~~fAGe~t~~~~~g~~~GA~~sg~raa~~i~~~  425 (431)
T 3k7m_X          373 A--PRVGQFSRVHK-----ELGEPAGRIHFVGSDVSLEFPGYIEGALETAECAVNAILHS  425 (431)
T ss_dssp             C--CCTTTTTTSSG-----GGGSCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHC
T ss_pred             C--cCCCCCcccHH-----HHhCCCCcEEEEehhhhccCCeEehHHHHHHHHHHHHHHhh
Confidence            1  11222212233     445678999999977743  3566788  999999999864

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.92  E-value=4.7e-24  Score=218.39  Aligned_cols=98  Identities=11%  Similarity=0.092  Sum_probs=77.1

Q ss_pred             cccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhh----------c
Q 048009          231 YVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMD----------L  300 (531)
Q Consensus       231 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~----------l  300 (531)
                      +++| ++.++++|++.+.  +++|++|++|++|..++ +..+.|++.+|+++.||+||+|+++..+...          +
T Consensus       197 ~~~g-~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~-~~~v~v~~~~g~~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i  272 (516)
T 1rsg_A          197 FALN-YDSVVQRIAQSFP--QNWLKLSCEVKSITREP-SKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRI  272 (516)
T ss_dssp             EESC-HHHHHHHHHTTSC--GGGEETTCCEEEEEECT-TSCEEEEETTSCEEEEEEEEECCCHHHHHGGGSSCSCSTTCC
T ss_pred             hhhC-HHHHHHHHHHhCC--CCEEEECCEEEEEEEcC-CCeEEEEECCCcEEECCEEEECCCHHHhhhccccccccccce
Confidence            6777 8999999977664  26799999999999864 3334589999988999999999988874211          1


Q ss_pred             CCCCCCChHHHHHhhccCCCCCeEEEeeecCCC
Q 048009          301 VPGNILPDDFILSIKHSDYSSGTTKINLAVDKL  333 (531)
Q Consensus       301 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  333 (531)
                      .-.+.+|+.+.+.++++.+ .++.++++.++++
T Consensus       273 ~f~P~Lp~~~~~ai~~~~~-~~~~Kv~l~f~~~  304 (516)
T 1rsg_A          273 EFQPPLKPVIQDAFDKIHF-GALGKVIFEFEEC  304 (516)
T ss_dssp             EEESCCCHHHHHHTTSSCC-CCCEEEEEEESSC
T ss_pred             EecCCCCHHHHHHHHhCCC-CcceEEEEEeCCC
Confidence            1123489999999999988 6789999999875

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.92  E-value=4.3e-24  Score=207.15  Aligned_cols=229  Identities=14%  Similarity=0.167  Sum_probs=145.1

Q ss_pred             cccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCC--CCCCh
Q 048009          231 YVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPG--NILPD  308 (531)
Q Consensus       231 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~--~~~~~  308 (531)
                      ...+|+..+.++|.+.+   |++|+++++|++|..++ +++. |++.+|+++.||.||+|+++..+ .+|++.  +.+|+
T Consensus       106 ~~~~g~~~l~~~l~~~~---g~~i~~~~~V~~i~~~~-~~~~-v~~~~g~~~~ad~vV~A~p~~~~-~~ll~~~~~~l~~  179 (342)
T 3qj4_A          106 VAPQGISSIIKHYLKES---GAEVYFRHRVTQINLRD-DKWE-VSKQTGSPEQFDLIVLTMPVPEI-LQLQGDITTLISE  179 (342)
T ss_dssp             ECTTCTTHHHHHHHHHH---TCEEESSCCEEEEEECS-SSEE-EEESSSCCEEESEEEECSCHHHH-TTCBSTHHHHSCH
T ss_pred             ecCCCHHHHHHHHHHhc---CCEEEeCCEEEEEEEcC-CEEE-EEECCCCEEEcCEEEECCCHHHH-HHHhcccccccCH
Confidence            56788899999997755   89999999999999877 6654 88888887899999999988884 678764  24677


Q ss_pred             HHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCC
Q 048009          309 DFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPS  388 (531)
Q Consensus       309 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  388 (531)
                      .....+..++| .++.++++.++++...        +  ....|. .+. +                  ....-++++.+
T Consensus       180 ~~~~~l~~~~~-~~~~~v~l~~~~~~~~--------~--~~~~g~-~~~-~------------------~~~~~~~~~~~  228 (342)
T 3qj4_A          180 CQRQQLEAVSY-SSRYALGLFYEAGTKI--------D--VPWAGQ-YIT-S------------------NPCIRFVSIDN  228 (342)
T ss_dssp             HHHHHHHTCCB-CCEEEEEEECSSCC----------C--CSCSEE-ECS-S------------------CSSEEEEEEHH
T ss_pred             HHHHHHhcCCc-cccEEEEEEECCCCcc--------C--CceeeE-Ecc-C------------------CcceEEEEccc
Confidence            78889999999 6899999999864111        0  112222 221 1                  01233444444


Q ss_pred             CCCCCCC-CCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCCCCCc
Q 048009          389 VLDKTIS-PPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGN  467 (531)
Q Consensus       389 ~~d~~~a-p~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~~~G~  467 (531)
                      .+ |.+. |++..++++++. ..|..   .+.+ ..++++.+.+++.|+++++...+. ++..+   ..|.  +..|+..
T Consensus       229 ~k-~~r~~~~~~~~~v~~~~-~~~~~---~~~~-~~~~~~~~~~~~~l~~~~g~~~~p-~~~~v---~rW~--~a~p~~~  296 (342)
T 3qj4_A          229 KK-RNIESSEIGPSLVIHTT-VPFGV---TYLE-HSIEDVQELVFQQLENILPGLPQP-IATKC---QKWR--HSQVTNA  296 (342)
T ss_dssp             HH-TTCCCC-CCCEEEEEEC-HHHHH---HTTT-SCHHHHHHHHHHHHHHHSCSCCCC-SEEEE---EEET--TCSBSSC
T ss_pred             cC-CCCCCCCCCceEEEECC-HHHHH---Hhhc-CCHHHHHHHHHHHHHHhccCCCCC-ceeee---cccc--ccccccc
Confidence            44 3322 333345555543 12210   0111 124899999999999999844322 22211   1121  1223211


Q ss_pred             ccccCCCccccccCCCCCCCCCCC--CCCCCeeecCCCCCCCCCcCCc--hHHHHHHHHHHH
Q 048009          468 IFHGAMGLDSLFLMRPVKGWSNYR--TPLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVLQD  525 (531)
Q Consensus       468 ~~~~~~~~~~~~~~rp~~~~~~~~--t~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~~~  525 (531)
                      .   .        .+|     ...  ...++|++||||+. |+++++|  ||+.||++|+..
T Consensus       297 ~---~--------~~~-----~~~~~~~~~~l~laGd~~~-g~~v~~ai~sg~~aa~~i~~~  341 (342)
T 3qj4_A          297 A---A--------NCP-----GQMTLHHKPFLACGGDGFT-QSNFDGCITSALCVLEALKNY  341 (342)
T ss_dssp             C---S--------SSC-----SCEEEETTTEEEECSGGGS-CSSHHHHHHHHHHHHHHHTTC
T ss_pred             c---C--------CCc-----ceeEecCCccEEEEccccC-CCCccHHHHHHHHHHHHHHhh
Confidence            1   0        122     112  34689999999996 6799988  999999999764

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=99.91  E-value=9.4e-24  Score=210.52  Aligned_cols=312  Identities=13%  Similarity=0.117  Sum_probs=179.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeeccc-cc-------------------CCeeecccchhhh
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEE-LI-------------------PGFKFSRCSYLQS   75 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~-~~-------------------~g~~~d~g~~~~~   75 (531)
                      .++||+|||||++||+||+.|+++|++|+|+|+++.+||++.+.. ..                   .+|.+|.|+.++.
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~l~   84 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLM   84 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCBEE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcceee
Confidence            358999999999999999999999999999999999999998875 11                   3466666654422


Q ss_pred             cchh--hhhhc-Ccccccchhhhc------------cchh-hhHHHH-H--HHHHHHHHHHHHHhhcCCCcccccCCCcc
Q 048009           76 LLRP--SLIKC-GTRIGETWNEVV------------EAKS-IIVYAI-F--EDQLDKFSQFVDLLFDSSPPELLQGSSSY  136 (531)
Q Consensus        76 ~~~~--~~~~~-gl~~~~~~~~~~------------~~~~-~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (531)
                      ...+  .++.. |+...+.+....            .+.+ ...+.. .  ......+...+..+....           
T Consensus        85 ~~~~l~~ll~~lgl~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------  153 (433)
T 1d5t_A           85 ANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFD-----------  153 (433)
T ss_dssp             TTSHHHHHHHHHTGGGGCCEEECCEEEEEETTEEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHHCC-----------
T ss_pred             ccchHHHHHHHcCCccceEEEEeCceEEeeCCEEEECCCCHHHHhhCcccChhhHHHHHHHHHHHHhhc-----------
Confidence            1111  12211 432111111110            0000 000000 0  000000011111000000           


Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHhcChhhHHHHHHHHhccHHHHhhcccCChhHHHHHhhh-hhhccCCCCCCCChH--HH
Q 048009          137 SHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATD-AVIGTMSSVHTPGSG--YV  213 (531)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~g~~~~~~~~~~~--~~  213 (531)
                                             ..........+....++.+++.+++.++.++..+... .+.........+...  ..
T Consensus       154 -----------------------~~~p~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~  210 (433)
T 1d5t_A          154 -----------------------ENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINR  210 (433)
T ss_dssp             -----------------------TTCGGGGTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBSHHHHHH
T ss_pred             -----------------------ccCchhccccccccCCHHHHHHHcCCCHHHHHHHHHHHHhccCCCccCCCHHHHHHH
Confidence                                   0000000000124567888888888888888877532 111110111222221  22


Q ss_pred             HHHHHhhccCCCCCccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCCh
Q 048009          214 LLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATP  293 (531)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~  293 (531)
                      +..+.........+.+.+|+||++.++++|.+.+++.|++|+++++|++|..++ +++++|+. +|+++.||+||+|+++
T Consensus       211 ~~~~~~s~~~~g~~~~~~p~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~~v~~v~~-~g~~~~ad~VV~a~~~  288 (433)
T 1d5t_A          211 IKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMEN-GKVVGVKS-EGEVARCKQLICDPSY  288 (433)
T ss_dssp             HHHHHHSCCSSSCCSEEEETTCTTHHHHHHHHHHHHHTCCCBCSCCCCEEEEET-TEEEEEEE-TTEEEECSEEEECGGG
T ss_pred             HHHHHHHHHhcCCCcEEEeCcCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEeC-CEEEEEEE-CCeEEECCEEEECCCC
Confidence            222222111112334559999999999999999999999999999999999887 88877775 6778999999999988


Q ss_pred             HhHHhhcCCCCCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHc
Q 048009          294 YKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVN  373 (531)
Q Consensus       294 ~~~~~~ll~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (531)
                      +.  ..+ .             +++...+.+.+   ++++.+..        ..+.+ ++++++.               
T Consensus       289 ~~--~~~-~-------------~~~~~~~~~~i---l~~~~~~~--------~~~~~-~~i~~~~---------------  325 (433)
T 1d5t_A          289 VP--DRV-R-------------KAGQVIRIICI---LSHPIKNT--------NDANS-CQIIIPQ---------------  325 (433)
T ss_dssp             CG--GGE-E-------------EEEEEEEEEEE---ESSCCTTS--------TTCSS-EEEEECG---------------
T ss_pred             Cc--ccc-c-------------ccCcceeEEEE---EcCccccc--------CCCce-EEEEeCc---------------
Confidence            86  222 1             11111233332   55543211        01122 3666631               


Q ss_pred             CCCCCCCeEEEEeCCCCCCCCCCCCceEEEEEec
Q 048009          374 GLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQ  407 (531)
Q Consensus       374 ~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~  407 (531)
                      +.++.++.++++++| .||+++|+|++++++++.
T Consensus       326 ~~~~~~~~~~v~~~s-~d~~~aP~G~~~~~~~~~  358 (433)
T 1d5t_A          326 NQVNRKSDIYVCMIS-YAHNVAAQGKYIAIASTT  358 (433)
T ss_dssp             GGTTCSSCEEEEEEE-GGGTSSCTTCEEEEEEEE
T ss_pred             cccCCCCCEEEEEEC-CCCcccCCCCEEEEEEEe
Confidence            235677999999999 899999999999988754

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.91  E-value=8.2e-24  Score=213.75  Aligned_cols=235  Identities=16%  Similarity=0.135  Sum_probs=147.1

Q ss_pred             ccccc-cCchHHHHHHHHHHHHHcCcEEEcCc--ceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCC-
Q 048009          228 IWSYV-EGGMGSVSMAIGSAAREAGAHIVTRA--EVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPG-  303 (531)
Q Consensus       228 ~~~~~-~gG~~~l~~~l~~~~~~~G~~i~~~~--~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~-  303 (531)
                      .+.|| .||+++|+++|++.+.+.  +|++++  +|++|..++ ++   |++.+|+++.||+||+|++++.+ .+++.. 
T Consensus       206 ~f~yp~~gG~~~l~~~la~~l~~~--~i~~~~~~~V~~I~~~~-~~---v~~~~G~~~~ad~VI~a~p~~~~-~~ll~~~  278 (484)
T 4dsg_A          206 TFRFPQRGGTGIIYQAIKEKLPSE--KLTFNSGFQAIAIDADA-KT---ITFSNGEVVSYDYLISTVPFDNL-LRMTKGT  278 (484)
T ss_dssp             EEEEESSSCTHHHHHHHHHHSCGG--GEEECGGGCEEEEETTT-TE---EEETTSCEEECSEEEECSCHHHH-HHHEECS
T ss_pred             eEEeecCCCHHHHHHHHHhhhhhC--eEEECCCceeEEEEecC-CE---EEECCCCEEECCEEEECCCHHHH-HHHhhcc
Confidence            34456 499999999999877543  789994  699999876 53   56788988999999999988885 667643 


Q ss_pred             -CCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeE
Q 048009          304 -NILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPII  382 (531)
Q Consensus       304 -~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (531)
                       ..+++...+.+..++| .++.+++++++....-         ..+... .+++++.                  +.++.
T Consensus       279 ~~~~~~~~~~~l~~l~y-~s~~~v~l~~~~~~~~---------~~~~~~-~i~vp~~------------------~~~~~  329 (484)
T 4dsg_A          279 GFKGYDEWPAIADKMVY-SSTNVIGIGVKGTPPP---------HLKTAC-WLYFPED------------------TSPFY  329 (484)
T ss_dssp             SCTTGGGHHHHHHHCCE-EEEEEEEEEEESCCCG---------GGTTCC-EEECCST------------------TCSCS
T ss_pred             CCCCCHHHHHHHhCCCc-CceEEEEEEEcCCCcc---------cCCCCe-EEEEEcC------------------CCeEE
Confidence             2367778888889988 6889999999875310         001121 4444221                  12445


Q ss_pred             EEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCC--CceeEEEecCcchHHHH
Q 048009          383 EMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFS--SSIIGYDMLTPPDLERE  460 (531)
Q Consensus       383 ~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~--~~i~~~~~~tp~~~~~~  460 (531)
                      -++++++++|.++|+|++++++........    ..++    +++.+.+++.|.++. .++  +.+....+   ..|...
T Consensus       330 ri~~~s~~~p~~ap~g~~~l~~e~~~~~~~----~~~d----~~l~~~a~~~L~~~~-~~~~~~~~~~~~v---~r~~~~  397 (484)
T 4dsg_A          330 RATVFSNYSKYNVPEGHWSLMLEVSESKYK----PVNH----STLIEDCIVGCLASN-LLLPEDLLVSKWH---YRIEKG  397 (484)
T ss_dssp             EEECGGGTCGGGSCTTEEEEEEEEEEBTTB----CCCT----TSHHHHHHHHHHHTT-SCCTTCCEEEEEE---EEEEEE
T ss_pred             EEEeecCCCcccCCCCeEEEEEEEecCcCC----cCCH----HHHHHHHHHHHHHcC-CCCccceEEEEEE---EEeCcc
Confidence            688889999999999999888765322110    1222    778899999998873 333  22322111   111211


Q ss_pred             hCCCCCcccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCC-CC--CCcCCc--hHHHHHHHHH
Q 048009          461 IGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTH-PG--GGVMGA--PGRNAAGIVL  523 (531)
Q Consensus       461 ~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~-~g--~g~~~~--sg~~aa~~i~  523 (531)
                      +  |.....+    .......+.      ..... |||++|.... ..  .+++.+  +|..||+.|+
T Consensus       398 y--P~y~~~~----~~~~~~~~~------~l~~~-~l~~~Gr~g~~~y~v~~~d~~i~sg~~aa~~i~  452 (484)
T 4dsg_A          398 Y--PTPFIGR----NNLLEKAQP------ELMSR-CIYSRGRFGAWRYEVGNQDHSFMQGVEAIDHVL  452 (484)
T ss_dssp             E--ECCBTTH----HHHHHHHHH------HHHHT-TEEECSTTTTCCGGGCSHHHHHHHHHHHHHHHT
T ss_pred             c--cCCCccH----HHHHHHHHH------HHHhC-CcEeecCCcccccCCCChHHHHHHHHHHHHHHH
Confidence            1  1111000    000001111      11123 9999998552 22  345555  9999999998

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.89  E-value=1e-21  Score=205.85  Aligned_cols=249  Identities=16%  Similarity=0.160  Sum_probs=142.0

Q ss_pred             CccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC------CcEEEcCeEEecCChHhHHhhc
Q 048009          227 GIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD------GAQVHSSIVLSNATPYKTFMDL  300 (531)
Q Consensus       227 ~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~------g~~~~ad~VV~aa~~~~~~~~l  300 (531)
                      +.+..++||++.|+++|.+     +.+|++|++|++|..++ +.+. |++.+      |+++.||+||+|+++.. +.++
T Consensus       391 g~~~~~~gG~~~l~~~La~-----~l~I~l~~~V~~I~~~~-~~v~-V~~~~~~~~~~~~~~~Ad~VI~tvP~~v-L~~l  462 (662)
T 2z3y_A          391 GSHLTVRNGYSCVPVALAE-----GLDIKLNTAVRQVRYTA-SGCE-VIAVNTRSTSQTFIYKCDAVLCTLPLGV-LKQQ  462 (662)
T ss_dssp             SCCEEETTCTTHHHHHHTT-----TCEEETTEEEEEEEEET-TEEE-EEEEESSCTTCEEEEEESEEEECCCHHH-HHCS
T ss_pred             CceeeecCcHHHHHHHHHh-----cCceecCCeEEEEEECC-CcEE-EEEeecccCCCCeEEEeCEEEECCCHHH-Hhcc
Confidence            3445789999999999865     56899999999999987 5543 77655      56799999999888777 4553


Q ss_pred             C----CCCCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCC
Q 048009          301 V----PGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLP  376 (531)
Q Consensus       301 l----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (531)
                      .    -.+.+|+...+.++++.| .++.++++.++++. |.       +   .....-++....                
T Consensus       463 ~~~i~f~P~LP~~k~~Ai~~l~~-g~~~KV~l~f~~~f-W~-------~---~~~~~G~l~~~~----------------  514 (662)
T 2z3y_A          463 PPAVQFVPPLPEWKTSAVQRMGF-GNLNKVVLCFDRVF-WD-------P---SVNLFGHVGSTT----------------  514 (662)
T ss_dssp             SCSSEEESCCCHHHHHHHHHSEE-CCCEEEEEECSSCC-SC-------T---TCSEEEECCSSS----------------
T ss_pred             cCceEEcCCCCHHHHHHHHhCCc-cceeEEEEEcCccc-cc-------C---CCCceeeecCCC----------------
Confidence            1    134589988889999988 68899999998742 21       1   011111111110                


Q ss_pred             CCCCeEEEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCC-CceeEEEecCcc
Q 048009          377 SRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFS-SSIIGYDMLTPP  455 (531)
Q Consensus       377 ~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-~~i~~~~~~tp~  455 (531)
                      .....+++.+++.        +..+|..++......    .|.. ...+++.+.+++.|+++++... .......+   .
T Consensus       515 ~~~~~~~~~~~~~--------~~~vL~~~~~G~~a~----~~~~-lsdee~~~~~l~~L~~~~g~~~~~~p~~~~v---~  578 (662)
T 2z3y_A          515 ASRGELFLFWNLY--------KAPILLALVAGEAAG----IMEN-ISDDVIVGRCLAILKGIFGSSAVPQPKETVV---S  578 (662)
T ss_dssp             TTTTEEEEEECCS--------SSSEEEEEECTHHHH----HHTT-SCHHHHHHHHHHHHHHHHCTTSSCCCSEEEE---C
T ss_pred             CCCCceeEEEeCC--------CCCEEEEEeccHhHH----HHHh-CCHHHHHHHHHHHHHHHhCCcccCCCceeEE---E
Confidence            1123344444432        223555554211111    1111 1237888999999999886421 11211111   1


Q ss_pred             hHHHHhCCCCCcccccCCCc---cccccCCCCCC---CCCCCCCCCCeeecCCCCCC--CCCcCCc--hHHHHHHHHHHH
Q 048009          456 DLEREIGLTGGNIFHGAMGL---DSLFLMRPVKG---WSNYRTPLQGLYMCGSGTHP--GGGVMGA--PGRNAAGIVLQD  525 (531)
Q Consensus       456 ~~~~~~~~~~G~~~~~~~~~---~~~~~~rp~~~---~~~~~t~~~~ly~aG~~~~~--g~g~~~~--sg~~aa~~i~~~  525 (531)
                      .|.+. ....|++-......   ......+|..+   ....+++.++|||||++|..  .+.++||  ||+.||++|++.
T Consensus       579 ~W~~d-p~~~Gsys~~~pg~~~~~~~~l~~p~~~~~~~~~~~~~~grl~FAGe~ts~~~~g~v~GAi~SG~raA~~i~~~  657 (662)
T 2z3y_A          579 RWRAD-PWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQ  657 (662)
T ss_dssp             CTTTC-TTTSSSCEECBTTCCTHHHHHHHCCBCC---------CCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred             EECCC-CCCCcccccCCCCCchhhHHHHhCcCccccccccccCCCCcEEEEeccccCCCCcCHHHHHHHHHHHHHHHHHH
Confidence            22221 11122211000100   00001122100   01235567899999999964  3566788  999999999998


Q ss_pred             hhh
Q 048009          526 LKK  528 (531)
Q Consensus       526 ~~~  528 (531)
                      +++
T Consensus       658 ~~g  660 (662)
T 2z3y_A          658 FLG  660 (662)
T ss_dssp             HTC
T ss_pred             ccC
Confidence            865

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.89  E-value=8e-22  Score=197.20  Aligned_cols=256  Identities=16%  Similarity=0.196  Sum_probs=138.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcC-CcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Cccccc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAG-LSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGE   90 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G-~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~   90 (531)
                      .++||+|||||++||+||++|+++| ++|+|+|+++++||++.+.. ..|+.+|.|++++....+.+.+.    |++...
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~-~~G~~~d~G~~~~~~~~~~~~~l~~~~g~~~~~   83 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPN-YHGRRYEMGAIMGVPSYDTIQEIMDRTGDKVDG   83 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCE-ETTEECCSSCCCBCTTCHHHHHHHHHHCCCCCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccC-CCCcccccCceeecCCcHHHHHHHHHhCCcccc
Confidence            4689999999999999999999999 99999999999999999876 67999999987754333333222    442110


Q ss_pred             ch--hhhcc-------c-hhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhc
Q 048009           91 TW--NEVVE-------A-KSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISL  160 (531)
Q Consensus        91 ~~--~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (531)
                      ..  ..+..       . .+.............+...+..........     ..+.. .                    
T Consensus        84 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~-~--------------------  137 (424)
T 2b9w_A           84 PKLRREFLHEDGEIYVPEKDPVRGPQVMAAVQKLGQLLATKYQGYDAN-----GHYNK-V--------------------  137 (424)
T ss_dssp             CCCCEEEECTTSCEECGGGCTTHHHHHHHHHHHHHHHHHTTTTTTTSS-----SSSSC-C--------------------
T ss_pred             ccccceeEcCCCCEeccccCcccchhHHHHHHHHHHHHhhhhhhcccc-----cchhh-h--------------------
Confidence            00  00000       0 000000001111111111111110000000     00000 0                    


Q ss_pred             ChhhHHHHHHHHhccHHHHhhcccCChhHHHHHhhhhhhccCCCCCCCChHHHHHHHHhh---ccCCCCCccccccCchH
Q 048009          161 GQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMG---ETDGNPGIWSYVEGGMG  237 (531)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~gG~~  237 (531)
                              .+....++.+++.+..... +...+......+.+..+......+. +.+...   ......+.| .+.||++
T Consensus       138 --------~~~~~~s~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~-~~~~g~~  206 (424)
T 2b9w_A          138 --------HEDLMLPFDEFLALNGCEA-ARDLWINPFTAFGYGHFDNVPAAYV-LKYLDFVTMMSFAKGDLW-TWADGTQ  206 (424)
T ss_dssp             --------CGGGGSBHHHHHHHTTCGG-GHHHHTTTTCCCCCCCTTTSBHHHH-HHHSCHHHHHHHHHTCCB-CCTTCHH
T ss_pred             --------hhhhccCHHHHHHhhCcHH-HHHHHHHHHHhhccCChHhcCHHHH-HHhhhHhhhhcccCCceE-EeCChHH
Confidence                    0001244555555433332 2222211111111122222222221 111100   000112344 6889999


Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHHHHHhhcc
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHS  317 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i~~~  317 (531)
                      ++++++.+.+   +.+|+++++|++|..++ +++. |++.+|+ +.||+||+|+++..+ .++++.  . +..++.+.++
T Consensus       207 ~l~~~l~~~l---~~~v~~~~~V~~i~~~~-~~v~-v~~~~g~-~~ad~Vv~a~~~~~~-~~~l~~--~-~~~~~~~~~~  276 (424)
T 2b9w_A          207 AMFEHLNATL---EHPAERNVDITRITRED-GKVH-IHTTDWD-RESDVLVLTVPLEKF-LDYSDA--D-DDEREYFSKI  276 (424)
T ss_dssp             HHHHHHHHHS---SSCCBCSCCEEEEECCT-TCEE-EEESSCE-EEESEEEECSCHHHH-TTSBCC--C-HHHHHHHTTC
T ss_pred             HHHHHHHHhh---cceEEcCCEEEEEEEEC-CEEE-EEECCCe-EEcCEEEECCCHHHH-hhccCC--C-HHHHHHHhcC
Confidence            9999997655   56899999999999877 6665 8888886 899999999999885 566543  2 3334445666


Q ss_pred             CC
Q 048009          318 DY  319 (531)
Q Consensus       318 ~~  319 (531)
                      ++
T Consensus       277 ~~  278 (424)
T 2b9w_A          277 IH  278 (424)
T ss_dssp             EE
T ss_pred             Cc
Confidence            55

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.89  E-value=3.3e-21  Score=204.07  Aligned_cols=248  Identities=16%  Similarity=0.174  Sum_probs=141.9

Q ss_pred             CccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC------CcEEEcCeEEecCChHhHHhhc
Q 048009          227 GIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD------GAQVHSSIVLSNATPYKTFMDL  300 (531)
Q Consensus       227 ~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~------g~~~~ad~VV~aa~~~~~~~~l  300 (531)
                      +.+..++||++.|+++|.+     +.+|++|++|++|..++ +.+. |++.+      |+++.||+||+|+++.. +.++
T Consensus       562 g~~~~~~gG~~~L~~aLa~-----~l~I~Lnt~V~~I~~~~-~gV~-V~~~~~~~~~~g~~i~AD~VIvTvPl~v-Lk~l  633 (852)
T 2xag_A          562 GSHLTVRNGYSCVPVALAE-----GLDIKLNTAVRQVRYTA-SGCE-VIAVNTRSTSQTFIYKCDAVLCTLPLGV-LKQQ  633 (852)
T ss_dssp             SCCEEETTCTTHHHHHHTT-----TCCEECSEEEEEEEEET-TEEE-EEEEESSSTTCEEEEEESEEEECCCHHH-HHCS
T ss_pred             CceEEecCcHHHHHHHHHh-----CCCEEeCCeEEEEEEcC-CcEE-EEEeecccCCCCeEEECCEEEECCCHHH-HHhh
Confidence            3445789999999999865     45799999999999987 5543 77654      56799999999888777 4553


Q ss_pred             C----CCCCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCC
Q 048009          301 V----PGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLP  376 (531)
Q Consensus       301 l----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (531)
                      +    -.+.+|+...+.|+.+.| .++.++++.|+++  ||       +.  ...+.-++....                
T Consensus       634 ~~~I~F~P~LP~~k~~AI~~l~~-g~v~KV~L~F~~~--fW-------~~--~~~~fG~l~~~~----------------  685 (852)
T 2xag_A          634 PPAVQFVPPLPEWKTSAVQRMGF-GNLNKVVLCFDRV--FW-------DP--SVNLFGHVGSTT----------------  685 (852)
T ss_dssp             SCSSEEESCCCHHHHHHHHHSEE-CCCEEEEEECSSC--CS-------CT--TCCEEEECCSSS----------------
T ss_pred             hcccccCCCCCHHHHHHHHcCCc-cceEEEEEEcCCc--cc-------CC--CCCeeeeecccc----------------
Confidence            2    134589888889999988 6889999999874  22       10  011111111110                


Q ss_pred             CCCCeEEEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCC-----CceeEEEe
Q 048009          377 SRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFS-----SSIIGYDM  451 (531)
Q Consensus       377 ~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-----~~i~~~~~  451 (531)
                      .....+++.+++.        +..+|..++......    .|.. ...+++.+.+++.|.++++...     ..++..|.
T Consensus       686 ~~~~~l~~~~~~~--------~~pvLl~~v~G~~a~----~l~~-lsdeel~~~~l~~L~~ifG~~~~~~P~~~~vtrW~  752 (852)
T 2xag_A          686 ASRGELFLFWNLY--------KAPILLALVAGEAAG----IMEN-ISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWR  752 (852)
T ss_dssp             TTTTTTCEEEECS--------SSSEEEEEECHHHHH----HGGG-SCHHHHHHHHHHHHHHHHCTTTCCCCSEEEECCTT
T ss_pred             CCCCceEEEecCC--------CCCEEEEEecCcCHH----HHhc-CCHHHHHHHHHHHHHHHhCccccCCceEEEEEecC
Confidence            0001112222221        122555554221111    1111 1247889999999999886422     22222222


Q ss_pred             cCcchHHHHhCCCCCcccccCCCccccccCCCCCC---CCCCCCCCCCeeecCCCCCC--CCCcCCc--hHHHHHHHHHH
Q 048009          452 LTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKG---WSNYRTPLQGLYMCGSGTHP--GGGVMGA--PGRNAAGIVLQ  524 (531)
Q Consensus       452 ~tp~~~~~~~~~~~G~~~~~~~~~~~~~~~rp~~~---~~~~~t~~~~ly~aG~~~~~--g~g~~~~--sg~~aa~~i~~  524 (531)
                      ..|.+...|...+-|..    ....+ ....|..+   ....+++.++|||||++|..  .+.++||  ||+.||+.|++
T Consensus       753 ~dp~s~GsYs~~~pG~~----~~~~~-~L~~P~~~~~~~p~~~~~~grL~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il~  827 (852)
T 2xag_A          753 ADPWARGSYSYVAAGSS----GNDYD-LMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIAD  827 (852)
T ss_dssp             TCTTTSSSCEECBTTCC----TTHHH-HTTSCBCCCCSSTTCCCCCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCccccccCCCcc----hhhHH-HHhCccccccccccccCCCCcEEEEehhHhCCCCcCHHHHHHHHHHHHHHHHH
Confidence            22222111111111100    00000 01122100   01335677899999999964  3566787  99999999999


Q ss_pred             Hhhh
Q 048009          525 DLKK  528 (531)
Q Consensus       525 ~~~~  528 (531)
                      .+..
T Consensus       828 ~l~~  831 (852)
T 2xag_A          828 QFLG  831 (852)
T ss_dssp             HHHC
T ss_pred             HhhC
Confidence            8754

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.88  E-value=3.3e-22  Score=210.59  Aligned_cols=240  Identities=14%  Similarity=0.083  Sum_probs=137.0

Q ss_pred             ccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhh-cC-CCCCCC
Q 048009          230 SYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMD-LV-PGNILP  307 (531)
Q Consensus       230 ~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~-ll-~~~~~~  307 (531)
                      ..+.+|++.+.+++++     |++|+++++|++|..++ +++. |++.+|+++.||+||+|+++..+ .+ .+ -.+.+|
T Consensus       527 ~~~~~G~~~l~~aLa~-----gl~I~l~t~V~~I~~~~-~~v~-V~~~~G~~i~Ad~VIvA~P~~vL-~~~~i~f~P~Lp  598 (776)
T 4gut_A          527 TLLTPGYSVIIEKLAE-----GLDIQLKSPVQCIDYSG-DEVQ-VTTTDGTGYSAQKVLVTVPLALL-QKGAIQFNPPLS  598 (776)
T ss_dssp             EECTTCTHHHHHHHHT-----TSCEESSCCEEEEECSS-SSEE-EEETTCCEEEESEEEECCCHHHH-HTTCSEEESCCC
T ss_pred             EEECChHHHHHHHHHh-----CCcEEcCCeeEEEEEcC-CEEE-EEECCCcEEEcCEEEECCCHHHH-hhcccccCCCCC
Confidence            4678999999888853     78999999999999887 6655 88899988999999998877763 43 21 234589


Q ss_pred             hHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeC
Q 048009          308 DDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIP  387 (531)
Q Consensus       308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (531)
                      +.....+..+.+ .++.++++.++++  |+.      +........-++....                .....+.+.+.
T Consensus       599 ~~~~~ai~~l~~-g~~~KV~l~f~~~--FW~------~~~~g~~~fG~l~~~~----------------~~~~~~~~~~d  653 (776)
T 4gut_A          599 EKKMKAINSLGA-GIIEKIALQFPYR--FWD------SKVQGADFFGHVPPSA----------------SKRGLFAVFYD  653 (776)
T ss_dssp             HHHHHHHHHEEE-ECCEEEEEECSSC--TTH------HHHTTCSEEEECCSSG----------------GGTTEEEEEEE
T ss_pred             HHHHHHHHhCCC-eeEEEEEEecCcc--ccc------ccCCCCceEEeecCCc----------------CCCceEEEEec
Confidence            888889998887 6789999999874  220      0000000011121110                01122223222


Q ss_pred             CCCCCCCCCCC-ceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCC-CceeEEEecCcchHHHHhCCCC
Q 048009          388 SVLDKTISPPG-NHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFS-SSIIGYDMLTPPDLEREIGLTG  465 (531)
Q Consensus       388 s~~d~~~ap~G-~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-~~i~~~~~~tp~~~~~~~~~~~  465 (531)
                      .      .|+| ..+|..++......    .|.. ...+++.+.+++.|.++++... .......+   .+|.+.. ...
T Consensus       654 ~------~p~g~~~vL~~~i~G~~a~----~l~~-lsdeel~~~~l~~L~~ifg~~~~~~P~~~~v---t~W~~dp-~s~  718 (776)
T 4gut_A          654 M------DPQKKHSVLMSVIAGEAVA----SVRT-LDDKQVLQQCMATLRELFKEQEVPDPTKYFV---TRWSTDP-WIQ  718 (776)
T ss_dssp             S------CTTSCSCEEEEEECTHHHH----HHHT-SCHHHHHHHHHHHHHHHTTTSCCCCCSEEEE---CCGGGCT-TTC
T ss_pred             C------CCCCCceEEEEEecchhHH----HHHc-CCHHHHHHHHHHHHHHHhCcccccCcceEEE---ecCCCCC-ccC
Confidence            1      2444 34555554321110    1111 0237899999999999997421 11111111   1233221 112


Q ss_pred             CcccccCCCccccccCCCCCCCCCCCCCC-CCeeecCCCCCC--CCCcCCc--hHHHHHHHHHH
Q 048009          466 GNIFHGAMGLDSLFLMRPVKGWSNYRTPL-QGLYMCGSGTHP--GGGVMGA--PGRNAAGIVLQ  524 (531)
Q Consensus       466 G~~~~~~~~~~~~~~~rp~~~~~~~~t~~-~~ly~aG~~~~~--g~g~~~~--sg~~aa~~i~~  524 (531)
                      |++-....  .+.....+     ....|+ .+|||||++|++  .+.++||  ||..||++|+.
T Consensus       719 Gsys~~~~--g~~~~~~~-----~L~~p~~grL~FAGE~Ts~~~~gtveGAi~SG~RaA~~Ila  775 (776)
T 4gut_A          719 MAYSFVKT--GGSGEAYD-----IIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAA  775 (776)
T ss_dssp             CSEEEEBT--TCCTHHHH-----HHHCCBTTTEEECSGGGCSSSCSSHHHHHHHHHHHHHHHHC
T ss_pred             CCCCccCC--CCchhHHH-----HHhCcCCCcEEEEehhhcCCCCcCHHHHHHHHHHHHHHHHh
Confidence            32210000  00000000     112233 789999999974  3456788  99999999974

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.84  E-value=4.2e-20  Score=190.16  Aligned_cols=101  Identities=8%  Similarity=-0.058  Sum_probs=75.4

Q ss_pred             ccccccCchHHHHHHHHHHHHHcCcEEEcCccee--EEEecCCCc-----eeEE-EeCCCc--EEEcCeEEecCChHhHH
Q 048009          228 IWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVS--QLMINDSGR-----VNGV-QLADGA--QVHSSIVLSNATPYKTF  297 (531)
Q Consensus       228 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~--~I~~~~~g~-----~~~V-~~~~g~--~~~ad~VV~aa~~~~~~  297 (531)
                      .+..+.||+++|+++|++.+.+ |++|+++++|+  +|..++++.     .+.| ...+|+  ++.||+||+|+++..+.
T Consensus       338 ~~~~i~GG~~~L~~aLa~~l~~-g~~I~l~~~V~~~~I~~~~~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvTvP~~~L~  416 (721)
T 3ayj_A          338 EYTLPVTENVEFIRNLFLKAQN-VGAGKLVVQVRQERVANACHSGTASARAQLLSYDSHNAVHSEAYDFVILAVPHDQLT  416 (721)
T ss_dssp             EECCSSSSTHHHHHHHHHHHHH-HTTTSEEEEEECEEEEEEEECSSSSCCEEEEEEETTCCEEEEEESEEEECSCHHHHH
T ss_pred             ceeEECCcHHHHHHHHHHhccc-CCceEeCCEEEeeeEEECCCCCccccceEEEEEecCCceEEEEcCEEEECCCHHHHh
Confidence            3458899999999999998753 67789999999  999865341     1336 446777  78999999988776642


Q ss_pred             h-----hcC----------------------CCCCC-C-------hHHHHHhhccCCCCCeEEEeeec
Q 048009          298 M-----DLV----------------------PGNIL-P-------DDFILSIKHSDYSSGTTKINLAV  330 (531)
Q Consensus       298 ~-----~ll----------------------~~~~~-~-------~~~~~~i~~~~~~~~~~~~~~~~  330 (531)
                      .     ++-                      .++.+ |       ....++++++.| .+..|+++.+
T Consensus       417 ~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~-~~s~Kv~l~~  483 (721)
T 3ayj_A          417 PIVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHM-ARSSKVFATV  483 (721)
T ss_dssp             HHHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCE-ECEEEEEEEE
T ss_pred             hccccccccccccccccccccccccccccccCCcccCCcccccccHHHHHHHHhcCc-ccceEEEEEE
Confidence            1     121                      12225 7       788899999988 6779999999

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.78  E-value=1.2e-18  Score=172.33  Aligned_cols=251  Identities=13%  Similarity=0.158  Sum_probs=137.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeeccccc-------------------CCeeecccchhhhc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELI-------------------PGFKFSRCSYLQSL   76 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~-------------------~g~~~d~g~~~~~~   76 (531)
                      .++||+|||+|++|+++|+.|+++|++|+|+|+++.+||++.+....                   .+|.+|.++.++..
T Consensus        19 ~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l~~   98 (475)
T 3p1w_A           19 EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFILV   98 (475)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBEET
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEeec
Confidence            46999999999999999999999999999999999999999876511                   14677777654322


Q ss_pred             chhhhhh----cCcccccchhhhc----cc-h-------hhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhh
Q 048009           77 LRPSLIK----CGTRIGETWNEVV----EA-K-------SIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQF  140 (531)
Q Consensus        77 ~~~~~~~----~gl~~~~~~~~~~----~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (531)
                       ...+++    .++...+.+..+.    .. .       +...+.        +.......+...       ...+.++.
T Consensus        99 -~g~L~~lL~~~gv~~ylef~~~~~~y~~~~~~~~~~~~~g~~~~--------VPss~~e~~~~~-------lLs~~eK~  162 (475)
T 3p1w_A           99 -GGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHK--------VPATDMEALVSP-------LLSLMEKN  162 (475)
T ss_dssp             -TSHHHHHHHHTTCGGGSCEEECSEEEEEEEECCCSSSCCEEEEE--------CCCSHHHHHTCT-------TSCHHHHH
T ss_pred             -CcHHHHHHHHCCchheeEEEecCcceEEecCccccccCCCceEe--------CCCCHHHHhhcc-------CCCHHHHH
Confidence             212221    1433222222211    00 0       000000        000000000000       00011111


Q ss_pred             hhhhhhhhhHHHHHHHHHhcChhhHHHH--HHHHhccHHHHhhcccCChhHHHHHhh-hhhhccCCCCCCCChH--HHHH
Q 048009          141 KNKIRNSAFWAHCLRRAISLGQKDLVEF--VDLLLSPASKVLNKWFETDVLKATLAT-DAVIGTMSSVHTPGSG--YVLL  215 (531)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~~g~~~~~~~~~~~--~~~~  215 (531)
                      .        +.+.+.............+  .+....++.+|+.++-.++.++..+.. .++... ..+......  +..+
T Consensus       163 ~--------l~kFL~~l~~~~~~~~~~~~~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~~~-~~~~~~~a~~~l~ri  233 (475)
T 3p1w_A          163 R--------CKNFYQYVSEWDANKRNTWDNLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLN-DDYLKQPAYLTLERI  233 (475)
T ss_dssp             H--------HHHHHHHHHHCCTTCGGGSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSS-SGGGGSBHHHHHHHH
T ss_pred             H--------HHHHHHHHHhhhhccchhhhcccccCCCHHHHHHHcCCCHHHHHHHHHHHHhhcC-CCcccCCHHHHHHHH
Confidence            0        0111111100000000000  011245677777776666666665421 111110 011111121  1111


Q ss_pred             H-HH--hhccCCCCCccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEe-cCCCceeEEEeCCCcEEEcCeEEecC
Q 048009          216 H-HV--MGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMI-NDSGRVNGVQLADGAQVHSSIVLSNA  291 (531)
Q Consensus       216 ~-~~--~~~~~~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~-~~~g~~~~V~~~~g~~~~ad~VV~aa  291 (531)
                      . +.  +... + ...+.||+||++.|+++|.+.++++|++|+++++|++|.. ++ |++++|++.+|+++.||+||+|+
T Consensus       234 ~~y~~Sl~~y-g-~s~~~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~-g~v~gV~~~~G~~i~Ad~VI~a~  310 (475)
T 3p1w_A          234 KLYMQSISAF-G-KSPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDD-NKVCGIKSSDGEIAYCDKVICDP  310 (475)
T ss_dssp             HHHHHHHHHH-S-SCSEEEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEECTT-SCEEEEEETTSCEEEEEEEEECG
T ss_pred             HHHHHHHhhc-C-CCceEEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecC-CeEEEEEECCCcEEECCEEEECC
Confidence            1 11  1211 2 3345599999999999999999999999999999999999 55 88999999999889999999998


Q ss_pred             ChH
Q 048009          292 TPY  294 (531)
Q Consensus       292 ~~~  294 (531)
                      +.+
T Consensus       311 ~~~  313 (475)
T 3p1w_A          311 SYV  313 (475)
T ss_dssp             GGC
T ss_pred             Ccc
Confidence            865

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=99.78  E-value=3.6e-17  Score=166.21  Aligned_cols=194  Identities=13%  Similarity=0.043  Sum_probs=126.6

Q ss_pred             HHHHhccHHHHhhcccCChhHHHHHhhhhhhccCCCCCCCChHHHH---HHHHhhccCCCCCccccccCchHHHHHHHHH
Q 048009          169 VDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVL---LHHVMGETDGNPGIWSYVEGGMGSVSMAIGS  245 (531)
Q Consensus       169 ~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~  245 (531)
                      ..+...++.+++++++.++.++..+....  +. ...........+   ..++........+.|.|++||++.|+++|.+
T Consensus       310 ~~~d~~S~~d~L~~~~ls~~L~~~L~~~l--al-~~~~~~pa~~~l~~i~~~l~sl~~yg~sg~~yp~GG~g~L~qaL~r  386 (650)
T 1vg0_A          310 RAYEGTTFSEYLKTQKLTPNLQYFVLHSI--AM-TSETTSCTVDGLKATKKFLQCLGRYGNTPFLFPLYGQGELPQCFCR  386 (650)
T ss_dssp             HTTTTSBHHHHHTTSSSCHHHHHHHHHHT--TC---CCSCBHHHHHHHHHHHHHHTTSSSSSSEEEETTCTTHHHHHHHH
T ss_pred             hhhccCCHHHHHHHhCCCHHHHHHHHHHH--hc-cCCCCCchhHHHHHHHHHHHHHHhhccCceEEeCCchhHHHHHHHH
Confidence            34567899999999999999988876321  11 111111122221   1222111112224566999999999999999


Q ss_pred             HHHHcCcEEEcCcceeEEEecCC-CceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHHHHHhhccCCCCCeE
Q 048009          246 AAREAGAHIVTRAEVSQLMINDS-GRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTT  324 (531)
Q Consensus       246 ~~~~~G~~i~~~~~V~~I~~~~~-g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i~~~~~~~~~~  324 (531)
                      .++..|++|+++++|++|..+++ |++++|++.+|+++.||+||++.  ..     ++.. +    .   ....+ ..+.
T Consensus       387 ~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~--~~-----lp~~-~----~---~~~~~-~~v~  450 (650)
T 1vg0_A          387 MCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIED--SY-----LSEN-T----C---SRVQY-RQIS  450 (650)
T ss_dssp             HHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEG--GG-----BCTT-T----T---TTCCC-EEEE
T ss_pred             HHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEECh--hh-----cCHh-H----h---ccccc-cceE
Confidence            99999999999999999998764 78899998889999999999943  22     1221 1    1   11123 3567


Q ss_pred             EEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCCCCCceEEEE
Q 048009          325 KINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINL  404 (531)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~  404 (531)
                      .+.+.+++++.-        .....+.+.+.++...             |   .++.+++..+|. ++..+|+|++++++
T Consensus       451 R~i~i~~~pi~~--------~~~~~~~~~iiiP~~~-------------g---~~~~V~i~~~Ss-~~~~cP~G~~Vv~l  505 (650)
T 1vg0_A          451 RAVLITDGSVLR--------TDADQQVSILTVPAEE-------------P---GSFAVRVIELCS-STMTCMKGTYLVHL  505 (650)
T ss_dssp             EEEEEESSCSSC--------CSCCCCCEEEEECCSS-------------T---TSCCEEEEEECG-GGTSSCTTCEEEEE
T ss_pred             EEEEEecCCCCC--------cCCCcceEEEEccCcc-------------C---CCCCEEEEEeCC-CCCCCCCCCEEEEE
Confidence            777778875431        1101123445553321             1   357788988888 88999999999887


Q ss_pred             Ee
Q 048009          405 FI  406 (531)
Q Consensus       405 ~~  406 (531)
                      .+
T Consensus       506 st  507 (650)
T 1vg0_A          506 TC  507 (650)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.75  E-value=1.5e-18  Score=171.03  Aligned_cols=69  Identities=32%  Similarity=0.396  Sum_probs=58.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHc-CCcEEEEccCCCCCceeeccccc-CCeee-cccchhhhcchhhhhhc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARA-GLSVAVLERRHVIGGAAVTEELI-PGFKF-SRCSYLQSLLRPSLIKC   84 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~-G~~V~v~E~~~~~GG~~~s~~~~-~g~~~-d~g~~~~~~~~~~~~~~   84 (531)
                      .++||+|||||++||+||++|+++ |++|+|+|+++++||++.+.... .|+.+ +.|++++....+.+++.
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~   77 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHTSNKRVWDY   77 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcCCcHHHHHH
Confidence            369999999999999999999999 99999999999999999987622 68887 58988766555655544

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.73  E-value=8.2e-17  Score=156.58  Aligned_cols=66  Identities=26%  Similarity=0.380  Sum_probs=56.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeec-ccchhhhcchhhhhh
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFS-RCSYLQSLLRPSLIK   83 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d-~g~~~~~~~~~~~~~   83 (531)
                      ++||+|||||++||+||++|+++|++|+|+|+++++||++.+.. ..|+.++ .|++++....+.+++
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~-~~g~~~~~~G~~~~~~~~~~~~~   67 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTED-CEGIQIHKYGAHIFHTNDKYIWD   67 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEE-ETTEEEETTSCCCEEESCHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeec-cCCceeeccCCceecCCCHHHHH
Confidence            37999999999999999999999999999999999999998876 5788885 898876554454443

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.70  E-value=1.8e-16  Score=155.14  Aligned_cols=69  Identities=19%  Similarity=0.261  Sum_probs=58.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccc-cCCeee-cccchhhhcchhhhhhc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL-IPGFKF-SRCSYLQSLLRPSLIKC   84 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~-~~g~~~-d~g~~~~~~~~~~~~~~   84 (531)
                      .++||+|||||++||++|+.|+++|++|+|+|+++++||++.+... ..|+.+ |.|++++....+.+++.
T Consensus         2 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~   72 (384)
T 2bi7_A            2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNY   72 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccCCCceEeeCCceEECCCCHHHHHH
Confidence            3589999999999999999999999999999999999999988652 168876 89998876656655543

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.59  E-value=1.3e-14  Score=145.43  Aligned_cols=64  Identities=20%  Similarity=0.241  Sum_probs=57.3

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCc---ceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRA---EVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~---~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ...+...|.+.++++|++|++++   +|++|..++ +++++|++.+|+++.||.||+|+|.+.  ..|++
T Consensus       160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~-~~v~gV~t~~G~~i~Ad~VV~AtG~~s--~~l~~  226 (438)
T 3dje_A          160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFEN-NDVKGAVTADGKIWRAERTFLCAGASA--GQFLD  226 (438)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEET-TEEEEEEETTTEEEECSEEEECCGGGG--GGTSC
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecC-CeEEEEEECCCCEEECCEEEECCCCCh--hhhcC
Confidence            45789999999999999999999   999999887 888889999997899999999999997  56654

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.58  E-value=7.6e-15  Score=141.18  Aligned_cols=66  Identities=27%  Similarity=0.342  Sum_probs=55.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccC-CCCCceeecccc---------cCCeeecccchhhhcchhhh
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR-HVIGGAAVTEEL---------IPGFKFSRCSYLQSLLRPSL   81 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~-~~~GG~~~s~~~---------~~g~~~d~g~~~~~~~~~~~   81 (531)
                      ..+||+|||||++||+||+.|+++|++|+|||++ +++||++.+...         ..++.++.|++++....+.+
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~~~~~~  118 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPSFHPLT  118 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEETTCHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccccccccccCCCcEEecCceeecchHHHH
Confidence            4689999999999999999999999999999999 999999988652         36788999987654444433

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.56  E-value=2.9e-14  Score=139.52  Aligned_cols=59  Identities=10%  Similarity=0.111  Sum_probs=51.3

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc--EEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.|.+.++++|++|+++++|++|..++ ++.+.|++.+|+  ++.||.||+|+|++.
T Consensus       149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~-~~~~~v~~~~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRP-EGGFELDFGGAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECT-TSSEEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcC-CceEEEEECCCceeEEEeCEEEECCCcch
Confidence            35789999999999999999999999999887 553458888883  799999999999987

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.55  E-value=1e-14  Score=141.44  Aligned_cols=70  Identities=26%  Similarity=0.321  Sum_probs=58.7

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCee-ecccchhhhcchhhhhhc
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFK-FSRCSYLQSLLRPSLIKC   84 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~-~d~g~~~~~~~~~~~~~~   84 (531)
                      ...+||+|||||++||+||+.|+++|++|+|+|+++++||++.+.....|+. ++.|++++....+.+++.
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~~~~~~~~~~   97 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFHTNSKDVFEY   97 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTSCEECTTSCCCCEESCHHHHHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCCceEeecCCcccCCChHHHHHH
Confidence            4579999999999999999999999999999999999999998765467886 499998866555554443

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.51  E-value=2.4e-13  Score=143.41  Aligned_cols=62  Identities=13%  Similarity=0.119  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc-EEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA-QVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~-~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+..+|.+.+++.|++|+++++|++|..++ +++ .|++.+|+ ++.||.||+|+|.+.  ..+..
T Consensus       412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~-~~v-~V~t~~G~~~i~Ad~VVlAtG~~s--~~l~~  474 (689)
T 3pvc_A          412 SDLTHALMMLAQQNGMTCHYQHELQRLKRID-SQW-QLTFGQSQAAKHHATVILATGHRL--PEWEQ  474 (689)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECS-SSE-EEEEC-CCCCEEESEEEECCGGGT--TCSTT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeC-CeE-EEEeCCCcEEEECCEEEECCCcch--hcccc
Confidence            6899999999999999999999999999987 664 58888886 799999999999986  45543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.49  E-value=4.8e-13  Score=141.03  Aligned_cols=62  Identities=13%  Similarity=0.116  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+...|.+.+++.|++|+++++|++|..++ +++ .|++.+|.++.||.||+|+|.+.  ..+..
T Consensus       417 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~-~~v-~V~t~~G~~i~Ad~VVlAtG~~s--~~l~~  478 (676)
T 3ps9_A          417 AELTRNVLELAQQQGLQIYYQYQLQNFSRKD-DCW-LLNFAGDQQATHSVVVLANGHQI--SRFSQ  478 (676)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEET-TEE-EEEETTSCEEEESEEEECCGGGG--GCSTT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEeC-CeE-EEEECCCCEEECCEEEECCCcch--hcccc
Confidence            5789999999999999999999999999887 664 68888888899999999999987  45543

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.48  E-value=1.2e-13  Score=135.70  Aligned_cols=56  Identities=13%  Similarity=0.202  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.++++|++|+++++|++|..++ ++ ++|++.+| ++.||+||+|+|++.
T Consensus       154 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~-~~-~~V~t~~g-~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          154 DALHQGYLRGIRRNQGQVLCNHEALEIRRVD-GA-WEVRCDAG-SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCCCEEEEET-TE-EEEECSSE-EEEESEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEeC-Ce-EEEEeCCC-EEEcCEEEECCChhH
Confidence            5789999999999999999999999999877 65 56888888 699999999999987

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.43  E-value=4.6e-12  Score=125.52  Aligned_cols=57  Identities=25%  Similarity=0.399  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+.+.|.+.+++.|++|+++++|++|..++ +++++|++.+| ++.||.||+|+|.+.
T Consensus       174 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~-~~~~~v~~~~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          174 DHVAWAFARKANEMGVDIIQNCEVTGFIKDG-EKVTGVKTTRG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESS-SBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCeEEEEEEeC-CEEEEEEeCCc-eEECCEEEECCchhH
Confidence            3788999999999999999999999999887 77788999888 599999999999886

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.43  E-value=1.4e-12  Score=128.76  Aligned_cols=64  Identities=16%  Similarity=0.306  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC-CCc--EEEcCeEEecCChHhHHhhcC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA-DGA--QVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~--~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      ..+-..|.+.+++.|++++++++|+.+..++ +++.++... +++  +++||.||-|.|..+.+.+.+
T Consensus       102 ~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~-~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S~vr~~~  168 (397)
T 3oz2_A          102 DKFDKHLAALAAKAGADVWVKSPALGVIKEN-GKVAGAKIRHNNEIVDVRAKMVIAADGFESEFGRWA  168 (397)
T ss_dssp             HHHHHHHHHHHHHHTCEEESSCCEEEEEEET-TEEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcEEeeeeeeeeeeecc-ceeeeeeecccccceEEEEeEEEeCCccccHHHHHc
Confidence            3677778888899999999999999999887 777766553 332  689999999999887665554

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.42  E-value=1.6e-12  Score=127.69  Aligned_cols=56  Identities=20%  Similarity=0.180  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+.+.|.+.+++.|++|+++++|++|..++ +++ +|++.+| ++.||.||+|+|.+.
T Consensus       164 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~-~~~-~v~~~~g-~~~a~~vV~A~G~~s  219 (382)
T 1ryi_A          164 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDG-EAL-FIKTPSG-DVWANHVVVASGVWS  219 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSS-SSE-EEEETTE-EEEEEEEEECCGGGT
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCcEEEEEEEC-CEE-EEEcCCc-eEEcCEEEECCChhH
Confidence            5789999999999999999999999999877 666 6888888 699999999999876

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.42  E-value=1.4e-12  Score=128.33  Aligned_cols=62  Identities=10%  Similarity=0.174  Sum_probs=52.7

Q ss_pred             cccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          231 YVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       231 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ++......+.+.|.+.+++.|++|+++++|++|..++ +. +.|++.+| ++.||.||+|+|.+.
T Consensus       126 ~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~-~~-~~V~~~~g-~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          126 FCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTA-SG-FRVTTSAG-TVDAASLVVASGGKS  187 (417)
T ss_dssp             EESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEET-TE-EEEEETTE-EEEESEEEECCCCSS
T ss_pred             eeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC-CE-EEEEECCc-EEEeeEEEECCCCcc
Confidence            4445556899999999999999999999999999876 54 45888888 699999999999876

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.41  E-value=2.6e-12  Score=126.15  Aligned_cols=57  Identities=23%  Similarity=0.447  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++.|++|+++++|++|..++ +++.+|++.+| ++.||.||+|+|.+.
T Consensus       149 ~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~-~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          149 FEATTAFAVKAKEYGAKLLEYTEVKGFLIEN-NEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESS-SBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEECCceEEEEEEEC-CEEEEEEECCc-EEECCEEEECcchhH
Confidence            5788999999999999999999999999887 78877888888 699999999999986

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.40  E-value=8.5e-13  Score=135.40  Aligned_cols=58  Identities=22%  Similarity=0.364  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC---C--cEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD---G--AQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~---g--~~~~ad~VV~aa~~~~  295 (531)
                      ..+..+|.+.++++|++|+++++|++|..++ +++++|++.|   |  .++.||.||+|+|+|.
T Consensus       170 ~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~-g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          170 ARLTLEIMKEAVARGAVALNYMKVESFIYDQ-GKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEET-TEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcC-CeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            5789999999999999999999999999987 8888888864   3  3689999999999997

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.36  E-value=2.2e-13  Score=137.93  Aligned_cols=58  Identities=19%  Similarity=0.198  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.+++.|++|+++++|++|..++ +++ .|++.+|+++.+|.||+|+|...
T Consensus       231 ~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~-~~v-~v~~~~g~~i~aD~Vi~A~G~~p  288 (484)
T 3o0h_A          231 DYDLRQLLNDAMVAKGISIIYEATVSQVQSTE-NCY-NVVLTNGQTICADRVMLATGRVP  288 (484)
T ss_dssp             CHHHHHHHHHHHHHHTCEEESSCCEEEEEECS-SSE-EEEETTSCEEEESEEEECCCEEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeC-CEE-EEEECCCcEEEcCEEEEeeCCCc
Confidence            45788889999999999999999999999876 555 58899998899999999998654

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.34  E-value=3.1e-12  Score=125.19  Aligned_cols=61  Identities=23%  Similarity=0.284  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+.+.|.+.+++.|++|+.+++|++|..++ +++ .|++.+|+ +.||.||+|+|++.  ..|++
T Consensus       149 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~-~v~~~~g~-~~a~~vV~a~G~~s--~~l~~  209 (372)
T 2uzz_A          149 ELAIKTWIQLAKEAGCAQLFNCPVTAIRHDD-DGV-TIETADGE-YQAKKAIVCAGTWV--KDLLP  209 (372)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECS-SSE-EEEESSCE-EEEEEEEECCGGGG--GGTST
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEcC-CEE-EEEECCCe-EEcCEEEEcCCccH--Hhhcc
Confidence            4788999999999999999999999999876 554 48888885 99999999999987  56665

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.34  E-value=1.1e-11  Score=123.95  Aligned_cols=59  Identities=20%  Similarity=0.252  Sum_probs=53.0

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.|.+.+++.|++|+++++|++|..++ +++++|++.+|+++.||.||+|+|.+.
T Consensus       133 ~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~-~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          133 AQSVVDALLTRLKDLGVKIRTNTPVETIEYEN-GQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCcEEEEEEecC-CcEEEEEECCCCEEECCEEEECCCCCc
Confidence            45788999999999999999999999999876 777889999998899999999999876

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.34  E-value=1.4e-11  Score=123.65  Aligned_cols=57  Identities=18%  Similarity=0.194  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEe---------------cCCCceeEEEeCCCcEE--EcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMI---------------NDSGRVNGVQLADGAQV--HSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~---------------~~~g~~~~V~~~~g~~~--~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.++++|++|+++++|++|..               ++ +++++|++.+|+ +  .||.||+|+|++.
T Consensus       181 ~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~-~~v~~V~t~~g~-i~~~Ad~VV~AtG~~s  254 (448)
T 3axb_A          181 EKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQE-ARASAAVLSDGT-RVEVGEKLVVAAGVWS  254 (448)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSC-EEEEEEEETTSC-EEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCC-CceEEEEeCCCE-EeecCCEEEECCCcCH
Confidence            47899999999999999999999999998               55 677788888884 8  9999999999987

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.33  E-value=3.4e-11  Score=122.55  Aligned_cols=62  Identities=23%  Similarity=0.322  Sum_probs=51.8

Q ss_pred             CchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC-Cc--EEEcC-eEEecCChHh
Q 048009          234 GGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD-GA--QVHSS-IVLSNATPYK  295 (531)
Q Consensus       234 gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~-g~--~~~ad-~VV~aa~~~~  295 (531)
                      +|...+...|.+.++++|++|+++++|++|..+++|++++|++.+ |+  ++.|| .||+|+|.+.
T Consensus       199 ~g~~~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          199 GGGYMLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             CTTHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            344489999999999999999999999999998338999988864 32  58996 9999999876

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.33  E-value=9.7e-12  Score=122.44  Aligned_cols=60  Identities=18%  Similarity=0.295  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      ..+...|.+.++++|++|+++++|++|..++ +++ .|++.+| ++.||.||+|+|.+.  ..++
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~-~~~-~v~~~~g-~~~a~~vV~A~G~~~--~~l~  209 (389)
T 2gf3_A          150 ENCIRAYRELAEARGAKVLTHTRVEDFDISP-DSV-KIETANG-SYTADKLIVSMGAWN--SKLL  209 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECS-SCE-EEEETTE-EEEEEEEEECCGGGH--HHHG
T ss_pred             HHHHHHHHHHHHHCCCEEEcCcEEEEEEecC-CeE-EEEeCCC-EEEeCEEEEecCccH--HHHh
Confidence            5788999999999999999999999999876 554 4777777 599999999999986  4444

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.31  E-value=1.2e-11  Score=127.51  Aligned_cols=61  Identities=20%  Similarity=0.248  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CCc--EEEcCeEEecCChHhH
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DGA--QVHSSIVLSNATPYKT  296 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~--~~~ad~VV~aa~~~~~  296 (531)
                      ...+.+.|.+.+++.|++|+++++|++|..++++++++|++.  +|+  ++.||.||+|+|.+..
T Consensus       249 ~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          249 GPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             HHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence            357889999999999999999999999987653788888775  675  6899999999998763

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.30  E-value=2.8e-11  Score=122.41  Aligned_cols=58  Identities=22%  Similarity=0.351  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+.+.|.+.+++.|++|+++++|++|..++ +++++|++.+|+++.||.||+|+|.+.
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~-~~v~gV~l~~G~~i~Ad~VVlA~G~~s  277 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHMED-GQITGVTLSNGEEIKSRHVVLAVGHSA  277 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEESS-SBEEEEEETTSCEEECSCEEECCCTTC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEeC-CEEEEEEECCCCEEECCEEEECCCCCh
Confidence            4788889999999999999999999999887 888889999999999999999999876

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.30  E-value=1.3e-12  Score=131.42  Aligned_cols=58  Identities=10%  Similarity=0.133  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEE-eCCCcEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQ-LADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~-~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.+++.|++|+++++|++|..++ ++...|+ +.+|+ +.+|.||+|+|...
T Consensus       210 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~v~~~~~g~-i~aD~Vv~a~G~~p  268 (463)
T 4dna_A          210 DQDMRRGLHAAMEEKGIRILCEDIIQSVSADA-DGRRVATTMKHGE-IVADQVMLALGRMP  268 (463)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEECT-TSCEEEEESSSCE-EEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEEcC-CCEEEEEEcCCCe-EEeCEEEEeeCccc
Confidence            45788999999999999999999999999876 4434588 88998 99999999998654

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.29  E-value=4.4e-11  Score=123.47  Aligned_cols=59  Identities=14%  Similarity=0.197  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++.|++|+++++|++|..+++|++++|++.  +|+  ++.||.||+|+|.+.
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence            57889999999999999999999999998654788888775  675  689999999999865

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.29  E-value=1.7e-11  Score=120.40  Aligned_cols=57  Identities=21%  Similarity=0.187  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEec----CCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMIN----DSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~----~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.|.+.+++.|++|+++++|++|..+    + +++ .|++.+| ++.||.||+|+|.+.
T Consensus       108 ~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~-~~~-~v~~~~g-~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          108 AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEK-VRF-VLQVNST-QWQCKNLIVATGGLS  168 (401)
T ss_dssp             THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSS-CCE-EEEETTE-EEEESEEEECCCCSS
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCC-CeE-EEEECCC-EEECCEEEECCCCcc
Confidence            4578889999999999999999999999976    4 554 5878777 699999999999876

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.28  E-value=1.2e-11  Score=122.12  Aligned_cols=56  Identities=23%  Similarity=0.310  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++.|++|+++++|++|..++ +.+. |++.+| ++.||.||+|+|.+.
T Consensus       153 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~-~~v~-v~t~~g-~i~a~~VV~A~G~~s  208 (397)
T 2oln_A          153 RGTLAALFTLAQAAGATLRAGETVTELVPDA-DGVS-VTTDRG-TYRAGKVVLACGPYT  208 (397)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEET-TEEE-EEESSC-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEcC-CeEE-EEECCC-EEEcCEEEEcCCcCh
Confidence            4688889999999999999999999999876 6554 777666 699999999999985

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.28  E-value=3.7e-11  Score=129.60  Aligned_cols=57  Identities=28%  Similarity=0.339  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.++++|++|+++++|++|..++ +++++|++.+| ++.||.||+|+|.+.
T Consensus       151 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~-~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          151 ARAVQLLIKRTESAGVTYRGSTTVTGIEQSG-GRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHcCCEEECCceEEEEEEeC-CEEEEEEECCc-EEECCEEEECCccch
Confidence            4789999999999999999999999999877 77778888888 599999999999987

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.28  E-value=2e-11  Score=125.46  Aligned_cols=58  Identities=16%  Similarity=0.352  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA---DGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..++..+.+.++++|++|+.+++|++|..++ +++++|++.   +|+  ++.||.||+|+|+|.
T Consensus       188 ~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~-~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws  250 (571)
T 2rgh_A          188 ARLVIDNIKKAAEDGAYLVSKMKAVGFLYEG-DQIVGVKARDLLTDEVIEIKAKLVINTSGPWV  250 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEET-TEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred             HHHHHHHHHHHHHcCCeEEeccEEEEEEEeC-CEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence            4688888888999999999999999999887 788888864   343  689999999999997

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.27  E-value=1.4e-13  Score=139.53  Aligned_cols=256  Identities=14%  Similarity=0.112  Sum_probs=128.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccC--------CCCCceeecccccCCeeecccchhhhcchhhhhhcCccc
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERR--------HVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKCGTRI   88 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~--------~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~gl~~   88 (531)
                      +|||+|||||.+|++||.++++.|.+|+|+|+.        ..+||.|-..+|+|.-.+-..+..........-..|+..
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~  121 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKF  121 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCccc
Confidence            489999999999999999999999999999974        358999988776654222111111111000000012210


Q ss_pred             ccchhhhccchhhhHH-HHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhh-------hhhhHHHHHHHHHhc
Q 048009           89 GETWNEVVEAKSIIVY-AIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIR-------NSAFWAHCLRRAISL  160 (531)
Q Consensus        89 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~  160 (531)
                          ..  ...++... .+.......+.......+.....+...+...|.+.......       ...+..+.+..+.+.
T Consensus       122 ----~~--~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs  195 (542)
T 4b1b_A          122 ----DN--LKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGC  195 (542)
T ss_dssp             ----EE--EEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCE
T ss_pred             ----Cc--ccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCC
Confidence                00  11122221 22223334444444445555556666665555544332110       000001111111111


Q ss_pred             ChhhH--HHHHHHHhccHHHHhhcccCChhHHHHHh--hhhhhccCCCCCCCChHHHHHHHHhhcc--CCCCCccccccC
Q 048009          161 GQKDL--VEFVDLLLSPASKVLNKWFETDVLKATLA--TDAVIGTMSSVHTPGSGYVLLHHVMGET--DGNPGIWSYVEG  234 (531)
Q Consensus       161 ~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g  234 (531)
                      .+...  .........+-.+.    +..+.+...+.  +.+++|.         .+..+...++.-  .....  ....+
T Consensus       196 ~P~~P~~~~~~~~~~~ts~~~----l~l~~lP~~lvIIGgG~IGl---------E~A~~~~~lG~~VTii~~~--~~L~~  260 (542)
T 4b1b_A          196 RPHIPDDVEGAKELSITSDDI----FSLKKDPGKTLVVGASYVAL---------ECSGFLNSLGYDVTVAVRS--IVLRG  260 (542)
T ss_dssp             EECCCSSSBTHHHHCBCHHHH----TTCSSCCCSEEEECCSHHHH---------HHHHHHHHHTCCEEEEESS--CSSTT
T ss_pred             CCCCCCcccCCCccccCchhh----hccccCCceEEEECCCHHHH---------HHHHHHHhcCCeEEEeccc--ccccc
Confidence            11000  00000000111111    11111111111  2223321         111111111110  00011  12344


Q ss_pred             chHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          235 GMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       235 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      -...+.+.+.+.+++.|+++++++.|+++...+ +++. |.+.++.++.+|.|++|+|-..
T Consensus       261 ~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~-~~~~-v~~~~~~~~~~D~vLvAvGR~P  319 (542)
T 4b1b_A          261 FDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMD-DKIL-VEFSDKTSELYDTVLYAIGRKG  319 (542)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEETCCEEEEEEET-TEEE-EEETTSCEEEESEEEECSCEEE
T ss_pred             cchhHHHHHHHHHHhhcceeecceEEEEEEecC-CeEE-EEEcCCCeEEEEEEEEcccccC
Confidence            467899999999999999999999999999877 6554 8888888899999999998554

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.24  E-value=4.7e-11  Score=121.90  Aligned_cols=58  Identities=16%  Similarity=0.224  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHcCc--EEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREAGA--HIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~--~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+.+.+.+.+++.|+  +++++++|+++..++++..+.|++.+|+++.||.||+|+|...
T Consensus       100 ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s  159 (549)
T 4ap3_A          100 EILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLS  159 (549)
T ss_dssp             HHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEE
T ss_pred             HHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCC
Confidence            556666777778887  8999999999998763445669999999999999999999654

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.23  E-value=2e-10  Score=116.54  Aligned_cols=58  Identities=12%  Similarity=0.177  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA---DGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~  295 (531)
                      ...+...|.+.++++|++|+++++|++|..++  ++++|++.   +|+  ++.||.||+|+|++.
T Consensus       148 ~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~--~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          148 DARLVLANAQMVVRKGGEVLTRTRATSARREN--GLWIVEAEDIDTGKKYSWQARGLVNATGPWV  210 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSEEEEEEEEET--TEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence            45789999999999999999999999999865  45678773   575  689999999999997

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.23  E-value=6.3e-13  Score=134.52  Aligned_cols=59  Identities=14%  Similarity=0.186  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.+++.|++|+++++|++|..++ ++...|++.+|+++.+|.||+|+|...
T Consensus       230 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~G~~i~~D~vv~a~G~~p  288 (490)
T 1fec_A          230 DSELRKQLTEQLRANGINVRTHENPAKVTKNA-DGTRHVVFESGAEADYDVVMLAIGRVP  288 (490)
T ss_dssp             CHHHHHHHHHHHHHTTEEEEETCCEEEEEECT-TSCEEEEETTSCEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCEEEEEECCCcEEEcCEEEEccCCCc
Confidence            35788889999999999999999999998765 433458889998899999999998654

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.20  E-value=2.5e-11  Score=120.82  Aligned_cols=66  Identities=9%  Similarity=0.232  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc--EEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA--QVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~--~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+...|.+.+++.|++|+++++|++|..++++..+.|++.+|+  ++.||.||.|+|.+..+.+++.
T Consensus       106 ~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s~l~~~~g  173 (421)
T 3nix_A          106 GNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGRVIPRMFG  173 (421)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGCHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCchhhHHhcC
Confidence            46788888888899999999999999998763434456778887  6999999999998886666654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.20  E-value=7.6e-13  Score=134.27  Aligned_cols=49  Identities=37%  Similarity=0.610  Sum_probs=42.0

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIP   63 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~   63 (531)
                      |.++||+|||||++|++||..|+++|++|+|+|+++.+||.|....+.+
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP   71 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIP   71 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHH
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchh
Confidence            4469999999999999999999999999999999999999987654433

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.20  E-value=6.9e-11  Score=120.42  Aligned_cols=58  Identities=12%  Similarity=0.104  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHcCc--EEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREAGA--HIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~--~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+.+.+.+.+++.|+  +|+++++|+++..++++..+.|++.+|+++.||.||+|+|...
T Consensus        88 ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s  147 (540)
T 3gwf_A           88 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLS  147 (540)
T ss_dssp             HHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCC
T ss_pred             HHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccc
Confidence            556667777778887  8999999999998763445669999999999999999999765

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.19  E-value=1.4e-10  Score=112.66  Aligned_cols=57  Identities=12%  Similarity=0.086  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+.+.+.+.+++.|++++++++|++|..++ +.+.+|++.+| ++.+|+||+|+|.+.
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~v~~~~g-~~~~d~vV~AtG~~~  132 (357)
T 4a9w_A           76 AEVLAYLAQYEQKYALPVLRPIRVQRVSHFG-ERLRVVARDGR-QWLARAVISATGTWG  132 (357)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSCCEEEEEEET-TEEEEEETTSC-EEEEEEEEECCCSGG
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEECC-CcEEEEEeCCC-EEEeCEEEECCCCCC
Confidence            3566777788888999999999999999876 55433788887 699999999999766

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.19  E-value=1.6e-11  Score=115.77  Aligned_cols=55  Identities=24%  Similarity=0.299  Sum_probs=49.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccch
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSY   72 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~   72 (531)
                      ++||+|||||++||+||+.|+++|++|+||||++.+||++.+.. ..+..+|.|..
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~-~~~~~~d~g~~   56 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKR-SDAGALDMGAQ   56 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEE-ETTEEEECSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccc-cCCceeecCcc
Confidence            48999999999999999999999999999999999999998765 56777887754

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.19  E-value=4e-11  Score=123.21  Aligned_cols=64  Identities=14%  Similarity=0.164  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC-CC--cEEEcCeEEecCChHhHHhhcC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA-DG--AQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~-~g--~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      ..+...|.+.+++.|++|+.+++|++|..++ +.+++|++. +|  .++.||.||.|+|.+..+.+.+
T Consensus       128 ~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~-g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S~lr~~l  194 (591)
T 3i3l_A          128 EEFDKLLLDEARSRGITVHEETPVTDVDLSD-PDRVVLTVRRGGESVTVESDFVIDAGGSGGPISRKL  194 (591)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEECCS-TTCEEEEEEETTEEEEEEESEEEECCGGGCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCEEEEEEecCCceEEEEcCEEEECCCCcchhHHHc
Confidence            4788888889999999999999999999875 666778887 67  4799999999999887655544

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.18  E-value=2.7e-10  Score=117.30  Aligned_cols=59  Identities=20%  Similarity=0.312  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++.|++|+++++|++|..+++|++++|++.  +|+  ++.||.||+|+|.+.
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~  317 (572)
T 1d4d_A          255 AHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFA  317 (572)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCc
Confidence            47889999999999999999999999987643788888775  664  689999999999765

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.18  E-value=1.6e-11  Score=125.34  Aligned_cols=60  Identities=15%  Similarity=0.248  Sum_probs=49.8

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCce--eEEEeCCCc-EEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRV--NGVQLADGA-QVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~--~~V~~~~g~-~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.+++.|++|+++++|++|..++++++  ..|++.+|+ ++.||.||+|+|...
T Consensus       254 ~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p  316 (523)
T 1mo9_A          254 DNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQP  316 (523)
T ss_dssp             SHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEE
T ss_pred             cHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCcc
Confidence            457888999999999999999999999997653443  357888887 799999999998654

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.18  E-value=1.5e-10  Score=118.18  Aligned_cols=49  Identities=33%  Similarity=0.493  Sum_probs=42.6

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPG   64 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g   64 (531)
                      +.++||+|||||++|++||..|++.|++|+|||+++.+||.+... ..+|
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~-~yPg   55 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWN-RYPG   55 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC-CCTT
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccC-CCCc
Confidence            456899999999999999999999999999999999999987533 2444

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.18  E-value=3e-11  Score=119.65  Aligned_cols=61  Identities=10%  Similarity=0.116  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      ..+.+.|.+.+++  ++|+++++|++|..++ +.+. |++.||+++.||.||.|.|.+..+.+.+
T Consensus       127 ~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~a~~vV~AdG~~S~vr~~l  187 (407)
T 3rp8_A          127 AELQREMLDYWGR--DSVQFGKRVTRCEEDA-DGVT-VWFTDGSSASGDLLIAADGSHSALRPWV  187 (407)
T ss_dssp             HHHHHHHHHHHCG--GGEEESCCEEEEEEET-TEEE-EEETTSCEEEESEEEECCCTTCSSHHHH
T ss_pred             HHHHHHHHHhCCc--CEEEECCEEEEEEecC-CcEE-EEEcCCCEEeeCEEEECCCcChHHHHHh
Confidence            4677778777766  8899999999999887 6554 8899999999999999999887655554

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.17  E-value=1.9e-12  Score=129.71  Aligned_cols=58  Identities=14%  Similarity=0.108  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+.+.+.+.+++.|++++++++|++|..++ +....|++.+|+++.+|.||+|+|...
T Consensus       208 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~v~~~~g~~i~~D~vv~a~G~~p  265 (450)
T 1ges_A          208 PMISETLVEVMNAEGPQLHTNAIPKAVVKNT-DGSLTLELEDGRSETVDCLIWAIGREP  265 (450)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEECT-TSCEEEEETTSCEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC-CcEEEEEECCCcEEEcCEEEECCCCCc
Confidence            4688888999999999999999999998765 333458888998899999999988654

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.17  E-value=1.5e-10  Score=113.34  Aligned_cols=61  Identities=16%  Similarity=0.191  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+.+.|.+.+++.|++|+++++|++|.. + +   .|++.||+++.||.||.|.|.+....+.+.
T Consensus       107 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~-~---~v~~~~g~~~~ad~vV~AdG~~s~vr~~l~  167 (379)
T 3alj_A          107 SHLHDALVNRARALGVDISVNSEAVAADP-V-G---RLTLQTGEVLEADLIVGADGVGSKVRDSIG  167 (379)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEET-T-T---EEEETTSCEEECSEEEECCCTTCHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEe-C-C---EEEECCCCEEEcCEEEECCCccHHHHHHhc
Confidence            47888888889899999999999999987 4 5   478889988999999999999886666553

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.16  E-value=1.4e-12  Score=132.05  Aligned_cols=59  Identities=12%  Similarity=0.210  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.+++.|++|+++++|++|..++ ++...|++.+|+++.+|.||+++|...
T Consensus       234 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~G~~i~~D~vv~a~G~~p  292 (495)
T 2wpf_A          234 DETIREEVTKQLTANGIEIMTNENPAKVSLNT-DGSKHVTFESGKTLDVDVVMMAIGRIP  292 (495)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESCCEEEEEECT-TSCEEEEETTSCEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CceEEEEECCCcEEEcCEEEECCCCcc
Confidence            35788889999999999999999999998765 433558889998899999999998654

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.16  E-value=2.6e-10  Score=103.17  Aligned_cols=56  Identities=16%  Similarity=0.238  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+.+.|.+.+++. |++++ +++|++|..++ +++++|++.+|+++.||.||+|+|.+.
T Consensus        69 ~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~-~~v~~v~~~~g~~i~a~~VV~A~G~~s  125 (232)
T 2cul_A           69 AFHARAKYLLEGLRPLHLF-QATATGLLLEG-NRVVGVRTWEGPPARGEKVVLAVGSFL  125 (232)
T ss_dssp             HHHHHHHHHHHTCTTEEEE-ECCEEEEEEET-TEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             HHHHHHHHHHHcCCCcEEE-EeEEEEEEEeC-CEEEEEEECCCCEEECCEEEECCCCCh
Confidence            5566777888887 89998 67999999877 777789999998899999999999765

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.15  E-value=6.2e-10  Score=114.63  Aligned_cols=59  Identities=12%  Similarity=0.084  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++.|++|+++++|++|..++++++.+|.+   .+|+  .+.|+.||+|+|.+.
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~  206 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG  206 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCc
Confidence            5788999999999999999999999999862288888875   4565  588999999999876

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.15  E-value=2.2e-10  Score=117.45  Aligned_cols=44  Identities=36%  Similarity=0.453  Sum_probs=40.5

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      +.++||+|||||++||+||..|+++|++|+|||+++.+||.+..
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~   57 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYW   57 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccc
Confidence            34689999999999999999999999999999999999998753

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.15  E-value=1.2e-10  Score=119.41  Aligned_cols=64  Identities=25%  Similarity=0.267  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe--CCC-cEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL--ADG-AQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~--~~g-~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+.+.|.+.+++.|++|+++++|++|+.++ +.+. |++  .+| +++.||.||.|.|.++.+.+.+.
T Consensus       148 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~-~~v~-v~~~~~~G~~~~~a~~vV~ADG~~S~vR~~lG  214 (570)
T 3fmw_A          148 SRTEALLAEHAREAGAEIPRGHEVTRLRQDA-EAVE-VTVAGPSGPYPVRARYGVGCDGGRSTVRRLAA  214 (570)
T ss_dssp             HHHHHHHHHHHHHHTEECCBSCEEEECCBCS-SCEE-EEEEETTEEEEEEESEEEECSCSSCHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CeEE-EEEEeCCCcEEEEeCEEEEcCCCCchHHHHcC
Confidence            4678888888888999999999999999877 5554 666  678 68999999999999887777664

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.14  E-value=1.7e-10  Score=113.88  Aligned_cols=65  Identities=9%  Similarity=0.095  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCcee-EEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVN-GVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~-~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+.+.|.+.+++. |++|+++++|++|..++ ++++ .|++.+|+++.||.||.|.|.+..+.+.+.
T Consensus       107 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~g~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg  173 (399)
T 2x3n_A          107 ESLRRLVLEKIDGEATVEMLFETRIEAVQRDE-RHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLL  173 (399)
T ss_dssp             HHHHHHHHHHHTTCTTEEEECSCCEEEEEECT-TSCEEEEEETTSCEEEEEEEEECCCTTCHHHHHTS
T ss_pred             HHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcC-CceEEEEEECCCCEEECCEEEECCCCChHHHHHhC
Confidence            47888888888888 99999999999999877 6653 588899988999999999999887666654

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.14  E-value=4.8e-12  Score=127.16  Aligned_cols=57  Identities=12%  Similarity=0.040  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc-EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA-QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~-~~~ad~VV~aa~~~~  295 (531)
                      ..+.+.+.+.+++.|++++++++|++|..++ +. ..|++.+|+ ++.+|.||+|+|...
T Consensus       207 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~-~~v~~~~G~~~i~~D~vv~a~G~~p  264 (463)
T 2r9z_A          207 PLLSATLAENMHAQGIETHLEFAVAALERDA-QG-TTLVAQDGTRLEGFDSVIWAVGRAP  264 (463)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEEET-TE-EEEEETTCCEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC-Ce-EEEEEeCCcEEEEcCEEEECCCCCc
Confidence            4678888899999999999999999998765 44 458888998 899999999988654

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.14  E-value=2.5e-10  Score=108.07  Aligned_cols=40  Identities=33%  Similarity=0.420  Sum_probs=34.7

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCce
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGA   55 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~   55 (531)
                      |++|||+|||||+|||+||++|+++|++|+|+|++. +||.
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~-~gg~   43 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT-NRNR   43 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC-CGGG
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCCe
Confidence            457999999999999999999999999999999964 4554

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.13  E-value=1e-12  Score=132.95  Aligned_cols=58  Identities=14%  Similarity=0.141  Sum_probs=47.8

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC---cEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG---AQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g---~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.+++.|++|+++++|++|..++ +.+. |++.++   +++.+|.||+++|...
T Consensus       220 ~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~-~~~~-v~~~~~~g~~~~~~D~vi~a~G~~p  280 (476)
T 3lad_A          220 DEQVAKEAQKILTKQGLKILLGARVTGTEVKN-KQVT-VKFVDAEGEKSQAFDKLIVAVGRRP  280 (476)
T ss_dssp             CHHHHHHHHHHHHHTTEEEEETCEEEEEEECS-SCEE-EEEESSSEEEEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEEcC-CEEE-EEEEeCCCcEEEECCEEEEeeCCcc
Confidence            45788899999999999999999999999876 5544 666654   5789999999998654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.13  E-value=2.7e-10  Score=108.85  Aligned_cols=55  Identities=5%  Similarity=0.026  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+.+.+.+.+++.|+++++ ++|++|..++ +.+ .|++.+|+++.+|+||+|+|...
T Consensus        71 ~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~-~~~-~v~~~~g~~~~~d~lvlAtG~~~  125 (323)
T 3f8d_A           71 DMIKVFNKHIEKYEVPVLL-DIVEKIENRG-DEF-VVKTKRKGEFKADSVILGIGVKR  125 (323)
T ss_dssp             HHHHHHHHHHHTTTCCEEE-SCEEEEEEC---CE-EEEESSSCEEEEEEEEECCCCEE
T ss_pred             HHHHHHHHHHHHcCCEEEE-EEEEEEEecC-CEE-EEEECCCCEEEcCEEEECcCCCC
Confidence            4455566667778999999 8999999876 554 48888888899999999999764

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.13  E-value=5.8e-10  Score=115.77  Aligned_cols=58  Identities=21%  Similarity=0.302  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++.|++|+.++.|++|..++ |++.+|.+   .+|+  .+.|+.||+|+|.+.
T Consensus       158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  220 (660)
T 2bs2_A          158 HTMLFAVANECLKLGVSIQDRKEAIALIHQD-GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG  220 (660)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEET-TEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEEEEEEecC-CEEEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence            4788999999999999999999999999876 88888766   4676  489999999999887

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.13  E-value=2.1e-10  Score=117.68  Aligned_cols=64  Identities=13%  Similarity=0.133  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCC----ceeEEEeCCC---cEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSG----RVNGVQLADG---AQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g----~~~~V~~~~g---~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+...|.+.+++.|++|+++++|++|..++ +    .+. |++.++   .++.||.||.|.|.++.+.+.+.
T Consensus       120 ~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~-~~~~~~v~-v~~~~~~~~~~i~a~~vV~AdG~~S~vR~~lg  190 (535)
T 3ihg_A          120 DKLEPILLAQARKHGGAIRFGTRLLSFRQHD-DDAGAGVT-ARLAGPDGEYDLRAGYLVGADGNRSLVRESLG  190 (535)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEEC-GGGCSEEE-EEEEETTEEEEEEEEEEEECCCTTCHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEECC-CCccccEE-EEEEcCCCeEEEEeCEEEECCCCcchHHHHcC
Confidence            4688888999999999999999999999877 4    443 666665   67999999999999987666663

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.12  E-value=4.5e-12  Score=127.97  Aligned_cols=60  Identities=7%  Similarity=0.022  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC-cEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG-AQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g-~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.+++.|++|+++++|++|..++++++..|++.+| +++.+|.||+|+|...
T Consensus       225 d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p  285 (479)
T 2hqm_A          225 DECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKS  285 (479)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCC
Confidence            35788888999999999999999999998765243456888899 7899999999998654

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.12  E-value=1.2e-10  Score=118.56  Aligned_cols=64  Identities=16%  Similarity=0.292  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe--CCCc--EEEcCeEEecCChHhHHhhcC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL--ADGA--QVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~--~~g~--~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      ..+.+.|.+.+++.|++|+++++|++|..++ +++.+|++  .+|+  ++.||.||.|+|.+..+.+.+
T Consensus       111 ~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~-~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S~vr~~l  178 (512)
T 3e1t_A          111 ARFDDMLLRNSERKGVDVRERHEVIDVLFEG-ERAVGVRYRNTEGVELMAHARFIVDASGNRTRVSQAV  178 (512)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEET-TEEEEEEEECSSSCEEEEEEEEEEECCCTTCSSGGGT
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEEC-CEEEEEEEEeCCCCEEEEEcCEEEECCCcchHHHHHc
Confidence            3678888888999999999999999999987 77766665  4574  799999999999987655555

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.12  E-value=4.8e-10  Score=104.78  Aligned_cols=41  Identities=34%  Similarity=0.581  Sum_probs=37.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHc-CCcEEEEccCCCCCcee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARA-GLSVAVLERRHVIGGAA   56 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~-G~~V~v~E~~~~~GG~~   56 (531)
                      .++||+|||||++||+||+.|+++ |.+|+|+|+++.+||.+
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~   79 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA   79 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCce
Confidence            468999999999999999999997 99999999999988754

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.11  E-value=5.1e-10  Score=108.80  Aligned_cols=57  Identities=18%  Similarity=0.127  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+.+.+.+.+++.|++++++++|++|..++++. +.|++.+|+++.+|+||+|+|...
T Consensus        75 ~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~li~AtG~~~  131 (360)
T 3ab1_A           75 DLVESLWAQAERYNPDVVLNETVTKYTKLDDGT-FETRTNTGNVYRSRAVLIAAGLGA  131 (360)
T ss_dssp             HHHHHHHHHHHTTCCEEECSCCEEEEEECTTSC-EEEEETTSCEEEEEEEEECCTTCS
T ss_pred             HHHHHHHHHHHHhCCEEEcCCEEEEEEECCCce-EEEEECCCcEEEeeEEEEccCCCc
Confidence            445556666777899999999999999876234 458888898899999999999743

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.11  E-value=2.5e-12  Score=129.11  Aligned_cols=59  Identities=20%  Similarity=0.143  Sum_probs=50.0

Q ss_pred             chHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          235 GMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       235 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ....+.+.+.+.+++.|++|+++++|++|..++ +.+ .|++++|+++.+|.||+|+|...
T Consensus       206 ~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~-~~v-~v~~~~g~~i~~D~vv~A~G~~p  264 (455)
T 2yqu_A          206 MDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEA-KGA-RVELEGGEVLEADRVLVAVGRRP  264 (455)
T ss_dssp             SCHHHHHHHHHHHHHHTCEEECSCCEEEEEEET-TEE-EEEETTSCEEEESEEEECSCEEE
T ss_pred             cCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC-CEE-EEEECCCeEEEcCEEEECcCCCc
Confidence            346788899999999999999999999999765 443 47777888899999999999765

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.11  E-value=2.9e-10  Score=117.24  Aligned_cols=62  Identities=16%  Similarity=0.369  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC------C---------cEEEcCeEEecCChHhHHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD------G---------AQVHSSIVLSNATPYKTFM  298 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~------g---------~~~~ad~VV~aa~~~~~~~  298 (531)
                      ..+.+.|.+.+++.|++|+++++|++|..++++++++|++.+      |         .++.||.||.|.|.+..+.
T Consensus       144 ~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr  220 (584)
T 2gmh_A          144 GHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLA  220 (584)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCchHH
Confidence            478889999999999999999999999987646787888763      3         5799999999999887543

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.10  E-value=4.1e-10  Score=108.30  Aligned_cols=55  Identities=9%  Similarity=-0.027  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChH
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPY  294 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~  294 (531)
                      .+.+.+.+.+++.|++++++++|++|..++ +. +.|.+.+|+++.+|+||+|+|..
T Consensus        66 ~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~-~~-~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           66 DLVKGLVEQVAPFNPVYSLGERAETLEREG-DL-FKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             HHHHHHHHHHGGGCCEEEESCCEEEEEEET-TE-EEEEETTSCEEEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEEECC-CE-EEEEECCCCEEEeCEEEECCCCC
Confidence            444555666677789999999999999876 54 34788888889999999999974

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.10  E-value=2.7e-11  Score=122.98  Aligned_cols=59  Identities=20%  Similarity=0.180  Sum_probs=49.4

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcE-EEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQ-VHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~-~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.++++|++|+++++|++|..++ ++...|++.+|++ +.+|.||+++|...
T Consensus       216 d~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~~~~v~~~~g~~~~~~D~vi~a~G~~p  275 (500)
T 1onf_A          216 DESVINVLENDMKKNNINIVTFADVVEIKKVS-DKNLSIHLSDGRIYEHFDHVIYCVGRSP  275 (500)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEESS-TTCEEEEETTSCEEEEESEEEECCCBCC
T ss_pred             chhhHHHHHHHHHhCCCEEEECCEEEEEEEcC-CceEEEEECCCcEEEECCEEEECCCCCc
Confidence            35788889999999999999999999998765 3324588889987 99999999988654

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.08  E-value=2.9e-10  Score=109.16  Aligned_cols=55  Identities=11%  Similarity=0.001  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChH
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPY  294 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~  294 (531)
                      .+...+.+.+++.|++++++++|++|..++ +..+.|.+.+|+ +.+|+||+|+|..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~v~~~~g~-~~~d~vVlAtG~~  122 (332)
T 3lzw_A           68 ELINNLKEQMAKFDQTICLEQAVESVEKQA-DGVFKLVTNEET-HYSKTVIITAGNG  122 (332)
T ss_dssp             HHHHHHHHHHTTSCCEEECSCCEEEEEECT-TSCEEEEESSEE-EEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHhCCcEEccCEEEEEEECC-CCcEEEEECCCE-EEeCEEEECCCCC
Confidence            555666677777899999999999999876 423458888887 9999999999973

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.08  E-value=1.4e-09  Score=112.08  Aligned_cols=58  Identities=14%  Similarity=0.186  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++.|++|+.++.|++|..++ |++.+|.+   .+|+  .+.|+.||+|+|.+.
T Consensus       155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  217 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTSYFVEYFALDLLMEN-GECRGVIALCIEDGTIHRFRAKNTVIATGGYG  217 (621)
T ss_dssp             HHHHHHHHHHHTTSCCEEEETEEEEEEEEET-TEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEEceEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            4788999999989999999999999999877 88888876   3675  688999999999887

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.07  E-value=7.2e-12  Score=126.82  Aligned_cols=57  Identities=14%  Similarity=0.049  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CC--cEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DG--AQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g--~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.+++. ++|+++++|++|..++ +++. |++.  +|  +++.+|.||+|+|...
T Consensus       214 d~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~-~~v~-v~~~~~~G~~~~i~~D~Vi~a~G~~p  274 (492)
T 3ic9_A          214 DEEMKRYAEKTFNEE-FYFDAKARVISTIEKE-DAVE-VIYFDKSGQKTTESFQYVLAATGRKA  274 (492)
T ss_dssp             CHHHHHHHHHHHHTT-SEEETTCEEEEEEECS-SSEE-EEEECTTCCEEEEEESEEEECSCCEE
T ss_pred             CHHHHHHHHHHHhhC-cEEEECCEEEEEEEcC-CEEE-EEEEeCCCceEEEECCEEEEeeCCcc
Confidence            457888888888887 9999999999999876 6554 6664  67  5799999999998654

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.05  E-value=5.8e-10  Score=109.88  Aligned_cols=61  Identities=11%  Similarity=0.087  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      .+.+.|.+.+  .|++|+++++|++|..++ +++. |++.+|+++.||.||.|.|.++...+.+.
T Consensus       100 ~l~~~L~~~~--~~~~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~ad~vV~AdG~~S~vr~~~~  160 (397)
T 2vou_A          100 SIYGGLYELF--GPERYHTSKCLVGLSQDS-ETVQ-MRFSDGTKAEANWVIGADGGASVVRKRLL  160 (397)
T ss_dssp             HHHHHHHHHH--CSTTEETTCCEEEEEECS-SCEE-EEETTSCEEEESEEEECCCTTCHHHHHHH
T ss_pred             HHHHHHHHhC--CCcEEEcCCEEEEEEecC-CEEE-EEECCCCEEECCEEEECCCcchhHHHHhc
Confidence            5555565554  489999999999999877 6654 88899988999999999999887665543

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.04  E-value=8e-10  Score=112.16  Aligned_cols=57  Identities=14%  Similarity=0.250  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAARE-AGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++ .|++| ++++|++|..++ +++.+|.+.+|.++.||.||+|+|.+.
T Consensus       123 ~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~-g~V~GV~t~dG~~i~AdaVVLATG~~s  180 (637)
T 2zxi_A          123 KRYREYMKKVCENQENLYI-KQEEVVDIIVKN-NQVVGVRTNLGVEYKTKAVVVTTGTFL  180 (637)
T ss_dssp             HHHHHHHHHHHHTCTTEEE-EESCEEEEEESS-SBEEEEEETTSCEEECSEEEECCTTCB
T ss_pred             HHHHHHHHHHHHhCCCCEE-EEeEEEEEEecC-CEEEEEEECCCcEEEeCEEEEccCCCc
Confidence            3577788888887 59999 578999999887 888899999998999999999999875

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.04  E-value=1.2e-10  Score=115.07  Aligned_cols=56  Identities=16%  Similarity=0.249  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCccee---------EEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVS---------QLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~---------~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++.|++|+++++|+         +|..++ +++ +|++.+| ++.||.||+|+|++.
T Consensus       172 ~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~-~~v-~v~~~~g-~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          172 GSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTN-THQ-IVVHETR-QIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC---------CBCCE-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeC-CeE-EEEECCc-EEECCEEEECCCccH
Confidence            5788999999999999999999999         888766 665 6777777 699999999999986

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.04  E-value=8.7e-11  Score=118.84  Aligned_cols=59  Identities=12%  Similarity=0.090  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc-----EEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA-----QVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~-----~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.+++.|++|+++++|++|..++++.+ .|++.+++     ++.+|.||+++|...
T Consensus       226 d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~~p  289 (483)
T 3dgh_A          226 DQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTVLWAIGRKG  289 (483)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcCEEEECccccc
Confidence            457888899999999999999999999998652444 47776553     789999999988543

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.03  E-value=4.7e-11  Score=121.26  Aligned_cols=58  Identities=17%  Similarity=0.231  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.+++.|++|+++++|++|..++ +++ .|++.+|+++.+|.||+|+|...
T Consensus       222 d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~-~~v-~v~~~~g~~i~aD~Vv~a~G~~p  279 (499)
T 1xdi_A          222 DADAALVLEESFAERGVRLFKNARAASVTRTG-AGV-LVTMTDGRTVEGSHALMTIGSVP  279 (499)
T ss_dssp             SHHHHHHHHHHHHHTTCEEETTCCEEEEEECS-SSE-EEEETTSCEEEESEEEECCCEEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC-CEE-EEEECCCcEEEcCEEEECCCCCc
Confidence            35788889999999999999999999999876 554 47788888899999999999775

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.03  E-value=7.3e-12  Score=125.91  Aligned_cols=58  Identities=16%  Similarity=0.150  Sum_probs=47.6

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC-C--Cc--EEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA-D--GA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~-~--g~--~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.+++.|++|+++++|++|..++ +.+ .|++. +  |+  ++.+|.||+|+|...
T Consensus       209 ~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~~-~v~~~~~~~g~~~~i~~D~vv~a~G~~p  271 (464)
T 2eq6_A          209 DPETAALLRRALEKEGIRVRTKTKAVGYEKKK-DGL-HVRLEPAEGGEGEEVVVDKVLVAVGRKP  271 (464)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSEEEEEEEEET-TEE-EEEEEETTCCSCEEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeC-CEE-EEEEeecCCCceeEEEcCEEEECCCccc
Confidence            45788888999999999999999999998765 544 36665 6  76  799999999988554

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.03  E-value=1.1e-09  Score=105.27  Aligned_cols=55  Identities=13%  Similarity=0.205  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+...+.+.+++.|+++++++ |++|..++ +.+. +.+   .++.++.+|.||+|+|...
T Consensus        85 ~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~-~~~~-v~~~~~~~~~~~~~d~vvlAtG~~~  142 (338)
T 3itj_A           85 ELMDRMREQSTKFGTEIITET-VSKVDLSS-KPFK-LWTEFNEDAEPVTTDAIILATGASA  142 (338)
T ss_dssp             HHHHHHHHHHHHTTCEEECSC-EEEEECSS-SSEE-EEETTCSSSCCEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHcCCEEEEeE-EEEEEEcC-CEEE-EEEEecCCCcEEEeCEEEECcCCCc
Confidence            455566777788899999998 99998876 5544 666   3667899999999999753

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.03  E-value=3.1e-09  Score=92.05  Aligned_cols=54  Identities=17%  Similarity=0.112  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+.+.+.+.+++.|++++++ +|++|..++ +. ..|++++| ++.+|.||+|+|...
T Consensus        57 ~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~-~~-~~v~~~~g-~i~ad~vI~A~G~~~  110 (180)
T 2ywl_A           57 ELLRRLEAHARRYGAEVRPG-VVKGVRDMG-GV-FEVETEEG-VEKAERLLLCTHKDP  110 (180)
T ss_dssp             HHHHHHHHHHHHTTCEEEEC-CCCEEEECS-SS-EEEECSSC-EEEEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHcCCEEEeC-EEEEEEEcC-CE-EEEEECCC-EEEECEEEECCCCCC
Confidence            55666777788899999999 999999876 44 34888888 799999999999765

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.03  E-value=2.4e-09  Score=100.77  Aligned_cols=42  Identities=31%  Similarity=0.491  Sum_probs=38.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHc--CCcEEEEccCCCCCceee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~~GG~~~   57 (531)
                      .++||+|||||++||+||+.|+++  |++|+|+|+.+.+||.+.
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~  121 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAW  121 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTT
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccc
Confidence            358999999999999999999998  999999999999887653

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.02  E-value=6.7e-10  Score=112.39  Aligned_cols=64  Identities=14%  Similarity=0.110  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc---EEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA---QVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~---~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+.+.|.+.+++.|++|+++++|++|..++ +.++ |++.+++   +++||+||.|.|.++...+.+.
T Consensus       106 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v~-v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg  172 (500)
T 2qa1_A          106 SVTETHLEQWATGLGADIRRGHEVLSLTDDG-AGVT-VEVRGPEGKHTLRAAYLVGCDGGRSSVRKAAG  172 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCEEEEEEEET-TEEE-EEEEETTEEEEEEESEEEECCCTTCHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCEEECCcEEEEEEEcC-CeEE-EEEEcCCCCEEEEeCEEEECCCcchHHHHHcC
Confidence            3677888888889999999999999999877 6554 7777664   7999999999999987777664

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.02  E-value=3.5e-10  Score=114.44  Aligned_cols=64  Identities=14%  Similarity=0.111  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc---EEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA---QVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~---~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+.+.|.+.+++.|++|+++++|++|..++ +.++ |++.+++   ++.||+||.|.|.++...+.+.
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v~-v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg  173 (499)
T 2qa2_A          107 STTESVLEEWALGRGAELLRGHTVRALTDEG-DHVV-VEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAG  173 (499)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCEEEEEEECS-SCEE-EEEECSSCEEEEEEEEEEECCCTTCHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEE-EEEEcCCCcEEEEeCEEEEccCcccHHHHHcC
Confidence            3678888888888999999999999999887 5555 7777764   7999999999999987777664

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.02  E-value=1.2e-09  Score=111.49  Aligned_cols=57  Identities=18%  Similarity=0.229  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHH-cCcEEEcCcceeEEEe-cCCC------ceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAARE-AGAHIVTRAEVSQLMI-NDSG------RVNGVQLA---DGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~-~G~~i~~~~~V~~I~~-~~~g------~~~~V~~~---~g~--~~~ad~VV~aa~~~~  295 (531)
                      .+...|.+.+++ .|++|++++.|++|.. ++ +      ++.+|.+.   +|+  ++.|+.||+|+|.+.
T Consensus       139 ~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~-g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~  208 (540)
T 1chu_A          139 EVETTLVSKALNHPNIRVLERTNAVDLIVSDK-IGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGAS  208 (540)
T ss_dssp             ---CCCHHHHHHCTTEEEECSEEEEEEEEGGG-TTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCC-CCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence            567778888888 6999999999999998 44 5      78888775   565  689999999999877

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.02  E-value=3.1e-11  Score=121.99  Aligned_cols=60  Identities=13%  Similarity=0.011  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC---C----cEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD---G----AQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~---g----~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.+++.|++|+++++|++|..++++....|++.+   |    +++.+|.||+++|...
T Consensus       227 d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p  293 (478)
T 3dk9_A          227 DSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVP  293 (478)
T ss_dssp             CHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeecccc
Confidence            4578888899999999999999999999876534233477765   2    5789999999988554

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.02  E-value=5.5e-10  Score=110.69  Aligned_cols=60  Identities=8%  Similarity=0.136  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      .|-+.|.+   ..+.+|+++++|++++..+++++. |+++||++++||.||-|-|..+...+.+
T Consensus       113 ~L~~~L~~---~~~~~v~~~~~v~~~~~~~~~~v~-v~~~dG~~~~adlvVgADG~~S~vR~~l  172 (412)
T 4hb9_A          113 ELKEILNK---GLANTIQWNKTFVRYEHIENGGIK-IFFADGSHENVDVLVGADGSNSKVRKQY  172 (412)
T ss_dssp             HHHHHHHT---TCTTTEECSCCEEEEEECTTSCEE-EEETTSCEEEESEEEECCCTTCHHHHHH
T ss_pred             HHHHHHHh---hccceEEEEEEEEeeeEcCCCeEE-EEECCCCEEEeeEEEECCCCCcchHHHh
Confidence            34444433   335679999999999876645554 8999999999999999989888766554

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.01  E-value=8.4e-10  Score=112.47  Aligned_cols=56  Identities=18%  Similarity=0.258  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAARE-AGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+...|.+.+++ .|++| ++++|++|..++ +++++|++.+|.++.||.||+|+|.+.
T Consensus       125 ~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~-g~V~GV~t~dG~~I~Ad~VVLATGt~s  181 (651)
T 3ces_A          125 LYRQAVRTALENQPNLMI-FQQAVEDLIVEN-DRVVGAVTQMGLKFRAKAVVLTVGTFL  181 (651)
T ss_dssp             HHHHHHHHHHHTCTTEEE-EECCEEEEEESS-SBEEEEEETTSEEEEEEEEEECCSTTT
T ss_pred             HHHHHHHHHHHhCCCCEE-EEEEEEEEEecC-CEEEEEEECCCCEEECCEEEEcCCCCc
Confidence            567778888887 69999 578999999887 888899999998899999999999875

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.01  E-value=8.2e-09  Score=102.21  Aligned_cols=59  Identities=20%  Similarity=0.265  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.++++|++|+++++|++|..++ +++.+|+++||+++.||.||+++|...
T Consensus       193 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~v~~v~l~dG~~i~aD~Vv~a~G~~p  251 (415)
T 3lxd_A          193 GEALSEFYQAEHRAHGVDLRTGAAMDCIEGDG-TKVTGVRMQDGSVIPADIVIVGIGIVP  251 (415)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEESS-SBEEEEEESSSCEEECSEEEECSCCEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEecC-CcEEEEEeCCCCEEEcCEEEECCCCcc
Confidence            35788888999999999999999999999877 888889999999999999999998654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.00  E-value=1.2e-11  Score=124.88  Aligned_cols=59  Identities=8%  Similarity=0.055  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe-----CCCcEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL-----ADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~-----~~g~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.+++.|++|+++++|++|..++ ++...|++     .+++++.+|.||+++|...
T Consensus       219 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p  282 (474)
T 1zmd_A          219 DMEISKNFQRILQKQGFKFKLNTKVTGATKKS-DGKIDVSIEAASGGKAEVITCDVLLVCIGRRP  282 (474)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSEEEEEEEECT-TSCEEEEEEETTSCCCEEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCceEEEEEEcC-CceEEEEEEecCCCCceEEEcCEEEECcCCCc
Confidence            45788889999999999999999999999876 44223553     4566899999999998654

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.00  E-value=3e-10  Score=113.87  Aligned_cols=65  Identities=20%  Similarity=0.273  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC---CCc--EEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA---DGA--QVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+.+.|.+.+++.|++|+++++|++|..++ +++++|++.   +|+  ++.||.||.|.|.+..+.+.+.
T Consensus       100 ~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~vr~~l~  169 (453)
T 3atr_A          100 PLYNQRVLKEAQDRGVEIWDLTTAMKPIFED-GYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSFRSKLP  169 (453)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEET-TEEEEEEEEETTTTEEEEEECSEEEECCGGGCTTGGGSC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCcEEEEEEEEC-CEEEEEEEEEcCCCceEEEEcCEEEECcCCchhhHHhcC
Confidence            3677888888888999999999999999877 777777765   675  7899999999999886665553

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.00  E-value=6.3e-09  Score=107.36  Aligned_cols=59  Identities=14%  Similarity=0.179  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHhH
Q 048009          237 GSVSMAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYKT  296 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~~  296 (531)
                      ..+...|.+.+++.| ++|+++++|++|..++ +++.+|..   .+|+  .+.|+.||+|+|.+..
T Consensus       134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~  198 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR  198 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEETEEEEEEEEET-TEEEEEEEEETTTTEEEEEECSCEEECCCCCGG
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCCCcc
Confidence            478888999888888 9999999999999887 88877754   5676  6899999999998763

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.99  E-value=2.6e-09  Score=107.92  Aligned_cols=60  Identities=17%  Similarity=0.065  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecC-CCceeEEEe--C-CC--cEEEcCeEEecCChHhH
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMIND-SGRVNGVQL--A-DG--AQVHSSIVLSNATPYKT  296 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~g~~~~V~~--~-~g--~~~~ad~VV~aa~~~~~  296 (531)
                      ..+.+.|.+.+++.|++|+++++|++|..++ ++..+.|++  . +|  +++.||.||.|+|....
T Consensus       166 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~  231 (497)
T 2bry_A          166 RQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFV  231 (497)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcc
Confidence            4677788888888999999999999998741 133455777  4 66  46899999999998773

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.99  E-value=1e-11  Score=125.27  Aligned_cols=58  Identities=17%  Similarity=0.182  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHH-HHcCcEEEcCcceeEEEecCCCceeEEEeC--CC--cEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAA-REAGAHIVTRAEVSQLMINDSGRVNGVQLA--DG--AQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~-~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g--~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.+ ++.|++|+++++|++|..++ +++ .|++.  +|  +++.+|.||+|+|...
T Consensus       214 d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~~~g~~~~i~~D~vv~a~G~~p  276 (468)
T 2qae_A          214 DEDVTNALVGALAKNEKMKFMTSTKVVGGTNNG-DSV-SLEVEGKNGKRETVTCEALLVSVGRRP  276 (468)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEECSCEEEEEEECS-SSE-EEEEECC---EEEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcC-CeE-EEEEEcCCCceEEEECCEEEECCCccc
Confidence            356788889999 99999999999999999866 443 36665  66  5799999999998654

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.99  E-value=4.9e-09  Score=98.12  Aligned_cols=42  Identities=31%  Similarity=0.548  Sum_probs=38.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHc--CCcEEEEccCCCCCceee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~~GG~~~   57 (531)
                      .++||+|||||++||+||+.|+++  |++|+|+|+++.+||.+.
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~  107 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW  107 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccccc
Confidence            347999999999999999999998  999999999999987543

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.99  E-value=1.2e-10  Score=117.97  Aligned_cols=59  Identities=14%  Similarity=0.085  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC---Cc--EEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD---GA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~---g~--~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.+++.|++++++++|++|...+++.+ .|++.+   |+  ++.+|.||+++|...
T Consensus       224 d~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~-~v~~~~~~~g~~~~~~~D~vi~a~G~~p  287 (488)
T 3dgz_A          224 DQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQL-QVTWEDHASGKEDTGTFDTVLWAIGRVP  287 (488)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCE-EEEEEETTTTEEEEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcE-EEEEEeCCCCeeEEEECCEEEEcccCCc
Confidence            457888899999999999999999999987542443 355543   54  478999999988553

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.98  E-value=1.2e-09  Score=107.50  Aligned_cols=65  Identities=18%  Similarity=0.144  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe-CCCc--EEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL-ADGA--QVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~-~~g~--~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+.+.|.+.+.+.|++|+++++|++|..++++.+ .|++ .+|+  ++.||.||.|.|.+....+.+.
T Consensus       103 ~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~-~v~~~~~g~~~~~~a~~vV~AdG~~S~vr~~l~  170 (394)
T 1k0i_A          103 TEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGFHGISRQSIP  170 (394)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCTTCSTGGGSC
T ss_pred             HHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCce-EEEEecCCcEEEEEeCEEEECCCCCcHHHHhcC
Confidence            35777788888888999999999999987642333 4777 6887  7999999999999886666653

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.98  E-value=3.6e-09  Score=103.10  Aligned_cols=55  Identities=11%  Similarity=0.183  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+...+.+.+++.|++++++++|++|..++ +.+ .|.+.+|+ +.+|+||+|+|.+.
T Consensus        89 ~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~g~-~~~d~vVlAtG~~~  143 (369)
T 3d1c_A           89 TYAEYLQVVANHYELNIFENTVVTNISADD-AYY-TIATTTET-YHADYIFVATGDYN  143 (369)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECS-SSE-EEEESSCC-EEEEEEEECCCSTT
T ss_pred             HHHHHHHHHHHHcCCeEEeCCEEEEEEECC-CeE-EEEeCCCE-EEeCEEEECCCCCC
Confidence            456667777788899999999999999876 444 47777774 99999999999775

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.97  E-value=1.7e-11  Score=122.98  Aligned_cols=45  Identities=27%  Similarity=0.483  Sum_probs=40.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL   61 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~   61 (531)
                      .++||+|||||++|++||..|++.|++|+|+|+ +.+||.|....+
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~~g~   48 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNIGC   48 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHHSH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCCcCc
Confidence            358999999999999999999999999999999 789999875443

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.96  E-value=1.9e-09  Score=109.77  Aligned_cols=56  Identities=11%  Similarity=0.256  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+...+.+.+++. |++|+ +.+|+.|..++ +++.+|.+.+|+++.||.||+|+|.+.
T Consensus       118 ~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~-g~V~GV~t~~G~~i~Ad~VVLATG~~s  174 (641)
T 3cp8_A          118 QYSLYMRRIVEHEPNIDLL-QDTVIGVSANS-GKFSSVTVRSGRAIQAKAAILACGTFL  174 (641)
T ss_dssp             HHHHHHHHHHHTCTTEEEE-ECCEEEEEEET-TEEEEEEETTSCEEEEEEEEECCTTCB
T ss_pred             HHHHHHHHHHHhCCCCEEE-eeEEEEEEecC-CEEEEEEECCCcEEEeCEEEECcCCCC
Confidence            5677777778774 89995 56999998877 888889999998999999999999774

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.96  E-value=1.2e-09  Score=107.52  Aligned_cols=60  Identities=5%  Similarity=0.087  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      .|.+.|.+.++  +++|+++++|++|..++ +.+. |++.+|+++.||.||.|.|.+....+.+
T Consensus       129 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~ad~vV~AdG~~S~vR~~l  188 (398)
T 2xdo_A          129 DLRAILLNSLE--NDTVIWDRKLVMLEPGK-KKWT-LTFENKPSETADLVILANGGMSKVRKFV  188 (398)
T ss_dssp             HHHHHHHHTSC--TTSEEESCCEEEEEECS-SSEE-EEETTSCCEEESEEEECSCTTCSCCTTT
T ss_pred             HHHHHHHhhcC--CCEEEECCEEEEEEECC-CEEE-EEECCCcEEecCEEEECCCcchhHHhhc
Confidence            56666666553  36899999999999877 5554 8889998899999999999887555544

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.95  E-value=1.9e-09  Score=106.38  Aligned_cols=60  Identities=18%  Similarity=0.249  Sum_probs=53.5

Q ss_pred             chHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          235 GMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       235 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ....+.+.+.+.++++|++|+++++|++|..++ +++.+|++.||+++.||.||+++|...
T Consensus       182 ~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~v~~V~~~dG~~i~aD~Vv~a~G~~p  241 (404)
T 3fg2_P          182 VTPEISSYFHDRHSGAGIRMHYGVRATEIAAEG-DRVTGVVLSDGNTLPCDLVVVGVGVIP  241 (404)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETTSCEEECSEEEECCCEEE
T ss_pred             cCHHHHHHHHHHHHhCCcEEEECCEEEEEEecC-CcEEEEEeCCCCEEEcCEEEECcCCcc
Confidence            346788899999999999999999999999877 788889999999999999999998654

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.95  E-value=7e-09  Score=105.57  Aligned_cols=54  Identities=33%  Similarity=0.493  Sum_probs=40.5

Q ss_pred             ccccccccc-CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC--------CCCceeecc
Q 048009            6 FTSTTSALK-EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH--------VIGGAAVTE   59 (531)
Q Consensus         6 ~~~~~~~~~-~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~--------~~GG~~~s~   59 (531)
                      ++..+..++ +.++||+|||||++|++||..|++.|++|+|+|+.+        .+||.|...
T Consensus        20 ~m~~~~~~~~~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~   82 (519)
T 3qfa_A           20 HMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNV   82 (519)
T ss_dssp             ------CCCSSCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHH
T ss_pred             CCCcccccCcCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCc
Confidence            344444444 346999999999999999999999999999999965        677776543

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.94  E-value=7.6e-09  Score=98.20  Aligned_cols=55  Identities=11%  Similarity=0.065  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+.+.+.+.+++.|+++++ ++|++|..++ +.+ .|++.+|+++.+|+||+|+|...
T Consensus        60 ~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~-~~~-~v~~~~g~~~~~~~vv~AtG~~~  114 (311)
T 2q0l_A           60 DFMQPWQEQCFRFGLKHEM-TAVQRVSKKD-SHF-VILAEDGKTFEAKSVIIATGGSP  114 (311)
T ss_dssp             HHHHHHHHHHHTTSCEEEC-SCEEEEEEET-TEE-EEEETTSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHcCCEEEE-EEEEEEEEcC-CEE-EEEEcCCCEEECCEEEECCCCCC
Confidence            3444455556778999988 7999998876 543 37778888899999999999654

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.94  E-value=4.9e-09  Score=104.87  Aligned_cols=43  Identities=30%  Similarity=0.373  Sum_probs=39.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCC--cEEEEccCCCCCceeec
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGL--SVAVLERRHVIGGAAVT   58 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~~~GG~~~s   58 (531)
                      ..+||+|||||++||+||..|+++|+  +|+|||+++.+||.+..
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~   49 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   49 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecC
Confidence            46899999999999999999999999  99999999999987643

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.94  E-value=5.6e-11  Score=125.29  Aligned_cols=45  Identities=36%  Similarity=0.511  Sum_probs=41.2

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecc
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTE   59 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~   59 (531)
                      ...+||+|||||++||+||+.|+++|++|+|+|+++.+||.+...
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~  433 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQE  433 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHH
T ss_pred             cccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeec
Confidence            346899999999999999999999999999999999999987653

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.93  E-value=7.4e-09  Score=98.97  Aligned_cols=40  Identities=48%  Similarity=0.797  Sum_probs=36.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      ++||+|||||++||+||..|+++|++|+|+|++ .+||.+.
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~   47 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIA   47 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGG
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcccc
Confidence            589999999999999999999999999999998 6787654

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.93  E-value=9.4e-11  Score=118.09  Aligned_cols=57  Identities=16%  Similarity=0.209  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.+++.|++|+++++|++|..++ +. ..|++++ .++.+|.||+|+|.+.
T Consensus       215 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~-~~v~~~~-~~i~aD~Vv~a~G~~p  271 (467)
T 1zk7_A          215 DPAIGEAVTAAFRAEGIEVLEHTQASQVAHMD-GE-FVLTTTH-GELRADKLLVATGRTP  271 (467)
T ss_dssp             CHHHHHHHHHHHHHTTCEEETTCCEEEEEEET-TE-EEEEETT-EEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CE-EEEEECC-cEEEcCEEEECCCCCc
Confidence            45788899999999999999999999998765 43 4477764 4699999999999765

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.92  E-value=4.3e-09  Score=101.01  Aligned_cols=54  Identities=11%  Similarity=0.161  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+.+.+.+.+++.|++++.++ |++|..++ +.+. |++ +|+++.+|+||+|+|.+.
T Consensus        71 ~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~-~~~~-v~~-~~~~~~~~~vv~A~G~~~  124 (333)
T 1vdc_A           71 ELTDKFRKQSERFGTTIFTET-VTKVDFSS-KPFK-LFT-DSKAILADAVILAIGAVA  124 (333)
T ss_dssp             HHHHHHHHHHHHTTCEEECCC-CCEEECSS-SSEE-EEC-SSEEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEeE-EEEEEEcC-CEEE-EEE-CCcEEEcCEEEECCCCCc
Confidence            455556666778899999986 99998766 5443 767 777899999999999765

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.91  E-value=4.1e-09  Score=104.25  Aligned_cols=63  Identities=16%  Similarity=0.158  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHH-cC-cEEEcCcceeEEEecCCCceeEEEeCC---C--cEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAARE-AG-AHIVTRAEVSQLMINDSGRVNGVQLAD---G--AQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~-~G-~~i~~~~~V~~I~~~~~g~~~~V~~~~---g--~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..|.+.|.+.+++ .| ++|+++++|++|.. + +.+. |++.+   |  +++.||.||.|.|.++...+.+.
T Consensus       107 ~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~-~~v~-v~~~~~~~g~~~~~~ad~vV~AdG~~S~vR~~l~  176 (410)
T 3c96_A          107 GELQMILLAAVRERLGQQAVRTGLGVERIEE-R-DGRV-LIGARDGHGKPQALGADVLVGADGIHSAVRAHLH  176 (410)
T ss_dssp             HHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-E-TTEE-EEEEEETTSCEEEEEESEEEECCCTTCHHHHHHC
T ss_pred             HHHHHHHHHHHHhhCCCcEEEECCEEEEEec-C-CccE-EEEecCCCCCceEEecCEEEECCCccchhHHHhc
Confidence            3677778887776 36 58999999999988 5 5554 66654   7  47899999999999887766553

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.91  E-value=7.8e-09  Score=105.94  Aligned_cols=59  Identities=17%  Similarity=0.223  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhH
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKT  296 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~  296 (531)
                      ..+...|.+.+++.|++++.+ +|++|..++++.+++|++.+|+++.||.||.|+|.+..
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL  223 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence            578889999999999999999 89999986536667788999988999999999998874

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.90  E-value=8e-09  Score=97.30  Aligned_cols=34  Identities=35%  Similarity=0.618  Sum_probs=32.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++||+|||||++||+||..|+++|++|+|+|+++
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   35 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGE   35 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            3899999999999999999999999999999965

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.89  E-value=1.2e-08  Score=96.97  Aligned_cols=40  Identities=38%  Similarity=0.537  Sum_probs=35.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCcee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAA   56 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~   56 (531)
                      +.|||+|||||+|||+||.+|+++|++|+|+|+.. .||.|
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~-~gg~~   42 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM-AGGVA   42 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS-GGGCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCCcc
Confidence            35999999999999999999999999999999964 44443

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.89  E-value=1.5e-08  Score=104.04  Aligned_cols=59  Identities=17%  Similarity=0.195  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhH
Q 048009          237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKT  296 (531)
Q Consensus       237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~  296 (531)
                      ..+.+.|.+.+++. |++++++ +|++|..++++.+++|++.+|+++.||.||.|+|.+..
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~  253 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGL  253 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchh
Confidence            46889999999998 9999999 99999886546677899999988999999999998874

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.89  E-value=3e-08  Score=103.28  Aligned_cols=57  Identities=21%  Similarity=0.214  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHc-Cc-EEEcCcceeEEEecCCC---ceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREA-GA-HIVTRAEVSQLMINDSG---RVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~-G~-~i~~~~~V~~I~~~~~g---~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      .+...|.+.+++. |+ +|+.++.|++|..++ +   +++||..   .+|+  .+.|+.||+|+|.+.
T Consensus       152 ~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~-~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~  218 (643)
T 1jnr_A          152 SYKPIIAEAAKMAVGEENIYERVFIFELLKDN-NDPNAVAGAVGFSVREPKFYVFKAKAVILATGGAT  218 (643)
T ss_dssp             THHHHHHHHHHHHHCGGGEECSEEEEEEEECT-TCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred             HHHHHHHHHHHhcCCCcEEEecCEEEEEEEcC-CccceeEEEEEEEecCCcEEEEEcCEEEECCCccc
Confidence            4667777778887 99 999999999999877 6   8888775   4665  589999999999876

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.89  E-value=1.3e-08  Score=97.09  Aligned_cols=41  Identities=41%  Similarity=0.858  Sum_probs=36.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      .++||+|||||++|++||+.|+++|++|+|+|+ ..+||.+.
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~   55 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTA   55 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGG
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCcccc
Confidence            358999999999999999999999999999999 46777653

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.89  E-value=1.2e-08  Score=97.88  Aligned_cols=41  Identities=46%  Similarity=0.617  Sum_probs=36.0

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCcee
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAA   56 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~   56 (531)
                      +.++||+|||||++|++||..|+++|++|+|+|+. .+||.+
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~   52 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGAL   52 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGG
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCce
Confidence            35689999999999999999999999999999975 566654

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.88  E-value=1.1e-08  Score=97.03  Aligned_cols=57  Identities=14%  Similarity=0.221  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCcceeEEEecCC-CceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          239 VSMAIGSAAREAGAHIVTRAEVSQLMINDS-GRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       239 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~-g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +.+.+.+.+++.|++++++++|+.|..+.+ +..+.|.+.+|+++.+|+||+|+|...
T Consensus        58 ~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~  115 (310)
T 1fl2_A           58 LAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKW  115 (310)
T ss_dssp             HHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCc
Confidence            344455556778999999999999986531 223458888898899999999999754

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.88  E-value=1e-08  Score=106.42  Aligned_cols=57  Identities=16%  Similarity=0.253  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHc--CcEEEcCcceeEEEecCCC---ceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREA--GAHIVTRAEVSQLMINDSG---RVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~--G~~i~~~~~V~~I~~~~~g---~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      .+...|.+.++++  |++|+.++.|++|..++ +   ++.||..   .+|+  .+.|+.||+|+|...
T Consensus       167 ~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~-~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g  233 (662)
T 3gyx_A          167 SYKVIVAEAAKNALGQDRIIERIFIVKLLLDK-NTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAV  233 (662)
T ss_dssp             SHHHHHHHHHHHHHCTTTEECSEEECCCEECS-SSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred             HHHHHHHHHHHhcCCCcEEEEceEEEEEEEeC-CccceEEEEEEEEcCCCcEEEEEeCEEEECCCccc
Confidence            5777888888887  99999999999999887 5   8888865   3554  588999999999776

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.87  E-value=2.5e-08  Score=100.06  Aligned_cols=58  Identities=21%  Similarity=0.279  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC-CcEEEcCeEEecCChHhH
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD-GAQVHSSIVLSNATPYKT  296 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~-g~~~~ad~VV~aa~~~~~  296 (531)
                      ..+...|.+.+++.|++|+.+++| +|..++ +++.+|.+.+ +.++.+|.||+|+|.+..
T Consensus       119 ~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~-~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          119 REIFNFLLKLAREEGIPIIEDRLV-EIRVKD-GKVTGFVTEKRGLVEDVDKLVLATGGYSY  177 (472)
T ss_dssp             HHHHHHHHHHHHHTTCCEECCCEE-EEEEET-TEEEEEEETTTEEECCCSEEEECCCCCGG
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEE-EEEEeC-CEEEEEEEEeCCCeEEeeeEEECCCCCcc
Confidence            467888888888889999999999 998877 8887777642 224789999999998873

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.87  E-value=2.4e-09  Score=107.66  Aligned_cols=43  Identities=33%  Similarity=0.542  Sum_probs=40.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecc
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTE   59 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~   59 (531)
                      ++||+|||||++|++||..|+++|++|+|+|+++.+||.|...
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~   46 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYS   46 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCccccc
Confidence            5899999999999999999999999999999999999998653

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.86  E-value=9.1e-09  Score=103.55  Aligned_cols=39  Identities=21%  Similarity=0.200  Sum_probs=36.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcC-----CcEEEEccCCCCCc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAG-----LSVAVLERRHVIGG   54 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G-----~~V~v~E~~~~~GG   54 (531)
                      ..+||+|||||++||+||..|+++|     .+|+|||+++.+|.
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~   72 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRW   72 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCC
Confidence            3579999999999999999999999     99999999998873

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.85  E-value=1.5e-08  Score=96.58  Aligned_cols=40  Identities=38%  Similarity=0.538  Sum_probs=35.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCcee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAA   56 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~   56 (531)
                      .++||+|||||++|++||..|+++|++|+|+|+. .+||.+
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~   43 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQL   43 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceE
Confidence            3589999999999999999999999999999974 566654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.84  E-value=2.5e-08  Score=101.51  Aligned_cols=58  Identities=12%  Similarity=0.229  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCC-CceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDS-GRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~-g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+...+.+.+++.|++++.+++|++|..+.+ +..+.|++.+|+++.+|+||+|+|...
T Consensus       268 ~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~  326 (521)
T 1hyu_A          268 KLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKW  326 (521)
T ss_dssp             HHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence            3444556667788999999999999986421 223458888998899999999999754

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.84  E-value=4.2e-08  Score=100.16  Aligned_cols=60  Identities=12%  Similarity=0.237  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHH
Q 048009          237 GSVSMAIGSAARE-AGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTF  297 (531)
Q Consensus       237 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~  297 (531)
                      ..+.+.|.+.+++ .|++++.+ +|++|..++++.+++|++.+|+++.||.||.|.|.+..+
T Consensus       175 ~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~  235 (526)
T 2pyx_A          175 AKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLL  235 (526)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHH
Confidence            4688888888988 89999999 699998875366667888887789999999999988743

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.82  E-value=4.7e-09  Score=107.62  Aligned_cols=60  Identities=17%  Similarity=0.239  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC---C--cEEEcCeEEecCChHhHHhhcCC
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD---G--AQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~---g--~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      .+.+.|.+.+++.   |+++++|++|..++ +.++ |++.+   |  .++.||+||.|.|.++...+.+.
T Consensus       139 ~l~~~L~~~a~~~---v~~~~~v~~~~~~~-~~v~-v~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg  203 (549)
T 2r0c_A          139 WLAPLLAEAVGER---LRTRSRLDSFEQRD-DHVR-ATITDLRTGATRAVHARYLVACDGASSPTRKALG  203 (549)
T ss_dssp             HHHHHHHHHHGGG---EECSEEEEEEEECS-SCEE-EEEEETTTCCEEEEEEEEEEECCCTTCHHHHHHT
T ss_pred             HHHHHHHHHHHHh---cccCcEEEEEEEeC-CEEE-EEEEECCCCCEEEEEeCEEEECCCCCcHHHHHcC
Confidence            5666777777766   99999999999887 6555 66554   6  36899999999999987666653

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.82  E-value=1.5e-08  Score=105.75  Aligned_cols=66  Identities=12%  Similarity=0.068  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHcCc--EEEcCcceeEEEecCC--CceeEEEeC------CC--cEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGA--HIVTRAEVSQLMINDS--GRVNGVQLA------DG--AQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~--~i~~~~~V~~I~~~~~--g~~~~V~~~------~g--~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+.+.|.+.+++.|+  +|+++++|++|..+++  +..+.|++.      +|  ++++||+||.|.|.++...+.+.
T Consensus       141 ~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg  218 (639)
T 2dkh_A          141 ARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSNVRRAIG  218 (639)
T ss_dssp             HHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTCHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcchHHHHHhC
Confidence            4678888899999987  9999999999998652  222346554      46  47899999999999987777764

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.81  E-value=2.4e-08  Score=101.75  Aligned_cols=59  Identities=14%  Similarity=0.212  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhH
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKT  296 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~  296 (531)
                      ..+...|.+.+++.|++++.+ +|++|..++++.+++|++.+|+++.||.||.|+|.+..
T Consensus       173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          173 DEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL  231 (511)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence            478888999999999999999 99999986546677799999988999999999998874

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.80  E-value=3.4e-08  Score=99.52  Aligned_cols=43  Identities=33%  Similarity=0.637  Sum_probs=40.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      .++||+|||||++|++||..|++.|++|+|+|+++.+||.|..
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~   47 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLN   47 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccC
Confidence            4699999999999999999999999999999999899998754

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.80  E-value=2.9e-08  Score=99.49  Aligned_cols=41  Identities=17%  Similarity=0.308  Sum_probs=38.8

Q ss_pred             CcEEEECCChhHHHHHHHHHH---cCCc---EEEEccCCCCCceeec
Q 048009           18 WDALVIGGGHNGLTAAAYLAR---AGLS---VAVLERRHVIGGAAVT   58 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~---~G~~---V~v~E~~~~~GG~~~s   58 (531)
                      +||+|||||++||+||..|++   .|++   |+|||+++.+||.+..
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~   49 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNY   49 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeec
Confidence            699999999999999999999   9999   9999999999998764

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.77  E-value=8.5e-09  Score=103.91  Aligned_cols=59  Identities=17%  Similarity=0.180  Sum_probs=50.9

Q ss_pred             chHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          235 GMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       235 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ....+.+.+.+.+++.|++|+++++|++|..++ +++. |++.+|+++.+|.||+|+|...
T Consensus       200 ~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~v~-v~~~~g~~i~aD~Vv~a~G~~p  258 (472)
T 3iwa_A          200 TSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGEN-GKVA-RVITDKRTLDADLVILAAGVSP  258 (472)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEECSCCEEEEEESS-SBEE-EEEESSCEEECSEEEECSCEEE
T ss_pred             cCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccC-CeEE-EEEeCCCEEEcCEEEECCCCCc
Confidence            346788899999999999999999999999866 6665 7888998999999999998653

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.77  E-value=1.4e-08  Score=102.64  Aligned_cols=42  Identities=36%  Similarity=0.654  Sum_probs=39.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      ++||+|||||++|++||..|+++|++|+|+|+++.+||.|..
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~   46 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLN   46 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccce
Confidence            589999999999999999999999999999999999998754

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=98.76  E-value=1.5e-08  Score=103.36  Aligned_cols=53  Identities=19%  Similarity=0.293  Sum_probs=42.1

Q ss_pred             HHHcCcEEEcCcceeEEEec----CCCceeEEEeC--CCc--EEEcC-eEEecCChHhHHhhcC
Q 048009          247 AREAGAHIVTRAEVSQLMIN----DSGRVNGVQLA--DGA--QVHSS-IVLSNATPYKTFMDLV  301 (531)
Q Consensus       247 ~~~~G~~i~~~~~V~~I~~~----~~g~~~~V~~~--~g~--~~~ad-~VV~aa~~~~~~~~ll  301 (531)
                      +.+.+.+|++++.|++|..+    + ++++||++.  +|+  ++.|+ .||+++|...+ .+||
T Consensus       237 ~~r~NL~V~t~a~V~rIl~d~~~~~-~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~S-PqLL  298 (583)
T 3qvp_A          237 YQRPNLQVLTGQYVGKVLLSQNGTT-PRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVS-PTIL  298 (583)
T ss_dssp             TTCTTEEEECSCEEEEEEEECSSSS-CEEEEEEEESSTTCEEEEEEEEEEEECSCTTTH-HHHH
T ss_pred             hcCCCcEEEcCCEEEEEEeccCCCC-CEEEEEEEEecCCcEEEEEECCEEEEeCCccCC-HHHH
Confidence            34668999999999999987    5 789999875  565  56786 59999998875 5554

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.76  E-value=6.3e-09  Score=98.85  Aligned_cols=45  Identities=38%  Similarity=0.635  Sum_probs=39.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL   61 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~   61 (531)
                      .+|||+|||||+|||+||.+|+++|++|+|+|+ ..+||.|....+
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~-~~~gG~~~~~~~   49 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIER-GIPGGQMANTEE   49 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTGGGGGCSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCCeeecccc
Confidence            469999999999999999999999999999998 468998865443

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.75  E-value=2e-08  Score=100.98  Aligned_cols=41  Identities=37%  Similarity=0.647  Sum_probs=37.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      ++||+|||||++|++||..|+++|++|+|+|++ .+||.|..
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~   43 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLN   43 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcccc
Confidence            589999999999999999999999999999998 78887754

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.73  E-value=1.8e-08  Score=101.74  Aligned_cols=42  Identities=40%  Similarity=0.745  Sum_probs=39.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      ++||+|||||++|++||..|++.|++|+|+|+++.+||.|..
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~   47 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLN   47 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceee
Confidence            589999999999999999999999999999999999988754

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.71  E-value=3.3e-08  Score=98.99  Aligned_cols=57  Identities=2%  Similarity=-0.045  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.+.+.+++.|++|+++++|++|..++ +++ .|++++| ++.+|.||+|+|...
T Consensus       188 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~v-~v~~~~g-~i~aD~Vv~A~G~~p  244 (452)
T 3oc4_A          188 DKEMVAEVQKSLEKQAVIFHFEETVLGIEETA-NGI-VLETSEQ-EISCDSGIFALNLHP  244 (452)
T ss_dssp             CHHHHHHHHHHHHTTTEEEEETCCEEEEEECS-SCE-EEEESSC-EEEESEEEECSCCBC
T ss_pred             CHHHHHHHHHHHHHcCCEEEeCCEEEEEEccC-CeE-EEEECCC-EEEeCEEEECcCCCC
Confidence            46788899999999999999999999999766 666 6888777 799999999988654

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.71  E-value=4.2e-08  Score=98.30  Aligned_cols=41  Identities=32%  Similarity=0.576  Sum_probs=38.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      ++||+|||||++|++||..|++.|++|+|+|++ .+||.|..
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~   43 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLN   43 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcC
Confidence            589999999999999999999999999999998 78888754

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.71  E-value=4e-08  Score=95.81  Aligned_cols=45  Identities=11%  Similarity=0.155  Sum_probs=38.0

Q ss_pred             HHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          247 AREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       247 ~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +++.|++++++++|++|..++ .   .|++++|+++.+|+||+|+|...
T Consensus        72 ~~~~~i~~~~~~~V~~id~~~-~---~v~~~~g~~~~yd~lvlAtG~~p  116 (385)
T 3klj_A           72 YEKNNIKVITSEFATSIDPNN-K---LVTLKSGEKIKYEKLIIASGSIA  116 (385)
T ss_dssp             HHHTTCEEECSCCEEEEETTT-T---EEEETTSCEEECSEEEECCCEEE
T ss_pred             HHHCCCEEEeCCEEEEEECCC-C---EEEECCCCEEECCEEEEecCCCc
Confidence            456799999999999998765 3   37889999999999999999643

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.68  E-value=8.9e-09  Score=98.35  Aligned_cols=43  Identities=30%  Similarity=0.529  Sum_probs=39.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHH--cCCcEEEEccCCCCCceeec
Q 048009           16 KKWDALVIGGGHNGLTAAAYLAR--AGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~--~G~~V~v~E~~~~~GG~~~s   58 (531)
                      ..+||+|||||++||+||++|++  .|++|+|||+++.+||.+..
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~  108 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL  108 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEe
Confidence            45899999999999999999986  49999999999999998753

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.62  E-value=5.4e-08  Score=99.38  Aligned_cols=52  Identities=23%  Similarity=0.391  Sum_probs=40.7

Q ss_pred             HHcCcEEEcCcceeEEEec--CCCceeEEEeC--CCc--EEEcC-eEEecCChHhHHhhcC
Q 048009          248 REAGAHIVTRAEVSQLMIN--DSGRVNGVQLA--DGA--QVHSS-IVLSNATPYKTFMDLV  301 (531)
Q Consensus       248 ~~~G~~i~~~~~V~~I~~~--~~g~~~~V~~~--~g~--~~~ad-~VV~aa~~~~~~~~ll  301 (531)
                      .+.|.+|++++.|++|..+  + ++++||++.  +|+  ++.|+ .||+++|...+ .+||
T Consensus       217 ~r~Nl~v~~~a~v~ri~~~~~~-~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~s-p~lL  275 (577)
T 3q9t_A          217 NKPNITIVPEVHSKRLIINEAD-RTCKGVTVVTAAGNELNFFADREVILSQGVFET-PKLL  275 (577)
T ss_dssp             SCTTEEEECSEEEEEEEEETTT-TEEEEEEEEETTSCEEEEEEEEEEEECSHHHHH-HHHH
T ss_pred             cCCCeEEEcCcEEEEEEEeCCC-CEEEEEEEEeCCCcEEEEEeeeEEEEcccccCC-hHHH
Confidence            3568999999999999998  5 789999885  365  46674 59999998875 4443

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.60  E-value=2.8e-07  Score=94.23  Aligned_cols=51  Identities=18%  Similarity=0.294  Sum_probs=41.2

Q ss_pred             HcCcEEEcCcceeEEEecCCCceeEEEeCCC---cEEEcCeEEecCChHhHHhhcC
Q 048009          249 EAGAHIVTRAEVSQLMINDSGRVNGVQLADG---AQVHSSIVLSNATPYKTFMDLV  301 (531)
Q Consensus       249 ~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g---~~~~ad~VV~aa~~~~~~~~ll  301 (531)
                      ..+.+|++++.|++|..++ +++++|...+.   ..+.++.||++||...+ .+||
T Consensus       223 r~nl~v~~~~~v~~i~~~~-~~a~gv~~~~~~~~~~~~a~~VILsAGai~S-P~LL  276 (526)
T 3t37_A          223 RKNLTILTGSRVRRLKLEG-NQVRSLEVVGRQGSAEVFADQIVLCAGALES-PALL  276 (526)
T ss_dssp             CTTEEEECSCEEEEEEEET-TEEEEEEEEETTEEEEEEEEEEEECSHHHHH-HHHH
T ss_pred             CCCeEEEeCCEEEEEEecC-CeEEEEEEEecCceEEEeecceEEcccccCC-cchh
Confidence            3468999999999999998 88888887532   25778999999999886 4554

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.56  E-value=8.3e-08  Score=96.95  Aligned_cols=40  Identities=40%  Similarity=0.585  Sum_probs=37.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      ++||+|||||++||+||+.|+++ ++|+|||+++.+||.+.
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~  147 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMW  147 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGG
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeee
Confidence            47999999999999999999999 99999999999887754

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.55  E-value=1.5e-07  Score=94.00  Aligned_cols=38  Identities=29%  Similarity=0.476  Sum_probs=34.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHc--CCcEEEEccCCCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIG   53 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~~G   53 (531)
                      .++||+|||||++||+||..|++.  |++|+|+|+++.++
T Consensus         2 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~   41 (449)
T 3kd9_A            2 SLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVS   41 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccc
Confidence            358999999999999999999998  78999999987654

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=98.53  E-value=4.5e-07  Score=91.76  Aligned_cols=59  Identities=19%  Similarity=0.134  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHcC-cEEEcCcceeEEEecCCC-ceeEEEeC--CC-----cEEEcCeEEecCChHhH
Q 048009          238 SVSMAIGSAAREAG-AHIVTRAEVSQLMINDSG-RVNGVQLA--DG-----AQVHSSIVLSNATPYKT  296 (531)
Q Consensus       238 ~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g-~~~~V~~~--~g-----~~~~ad~VV~aa~~~~~  296 (531)
                      ....++...++++| ++|++++.|++|..++++ ++++|++.  +|     .++.|+.||+|+|...+
T Consensus       227 s~~~~~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~~VIlaaGa~~s  294 (507)
T 1coy_A          227 SLDKTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGT  294 (507)
T ss_dssp             CTTTTHHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHH
T ss_pred             ChHHHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeCEEEEccCccCC
Confidence            34455555556665 999999999999987534 68899885  56     26789999999999865

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=98.52  E-value=3.6e-07  Score=92.48  Aligned_cols=59  Identities=20%  Similarity=0.223  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHcC-cEEEcCcceeEEEecCCC-ceeEEEeC--CC-----cEEEcCeEEecCChHhH
Q 048009          238 SVSMAIGSAAREAG-AHIVTRAEVSQLMINDSG-RVNGVQLA--DG-----AQVHSSIVLSNATPYKT  296 (531)
Q Consensus       238 ~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g-~~~~V~~~--~g-----~~~~ad~VV~aa~~~~~  296 (531)
                      ....++.+.++++| ++|++++.|++|..++++ ++++|++.  +|     .++.|+.||+|+|...+
T Consensus       222 s~~~~~l~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~~VIlaaG~~~s  289 (504)
T 1n4w_A          222 SLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGS  289 (504)
T ss_dssp             CTTTTHHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHH
T ss_pred             CHHHHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeCEEEEccCCCCC
Confidence            34445555566675 999999999999987533 78899884  56     36889999999999865

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.51  E-value=2e-07  Score=96.63  Aligned_cols=39  Identities=28%  Similarity=0.340  Sum_probs=35.3

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHc--CCcEEEEccCCCCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIG   53 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~~G   53 (531)
                      +.++||+|||||++||+||..|+++  |++|+|||+++.+|
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~   74 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS   74 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            4568999999999999999999998  89999999988654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.47  E-value=3.8e-07  Score=90.47  Aligned_cols=45  Identities=11%  Similarity=0.132  Sum_probs=37.4

Q ss_pred             HHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          247 AREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       247 ~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +++.|++++++++|+.|..++ .   .|++.+|+++.+|+||+|+|...
T Consensus        70 ~~~~gv~~~~~~~v~~i~~~~-~---~v~~~~g~~~~~d~lviAtG~~p  114 (431)
T 1q1r_A           70 YAAQNIQLLGGTQVTAINRDR-Q---QVILSDGRALDYDRLVLATGGRP  114 (431)
T ss_dssp             HHHTTEEEECSCCEEEEETTT-T---EEEETTSCEEECSEEEECCCEEE
T ss_pred             HHhCCCEEEeCCEEEEEECCC-C---EEEECCCCEEECCEEEEcCCCCc
Confidence            456799999999999998765 3   37788898899999999999754

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.47  E-value=2.4e-07  Score=91.40  Aligned_cols=44  Identities=20%  Similarity=0.323  Sum_probs=36.9

Q ss_pred             HHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          248 REAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       248 ~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ++.|++++++++|+.|..+. .   .|.+.+|+++.+|++|+|+|...
T Consensus        68 ~~~~i~~~~~~~v~~id~~~-~---~v~~~~g~~~~~d~lvlAtG~~p  111 (410)
T 3ef6_A           68 GEARIDMLTGPEVTALDVQT-R---TISLDDGTTLSADAIVIATGSRA  111 (410)
T ss_dssp             HHTTCEEEESCCEEEEETTT-T---EEEETTSCEEECSEEEECCCEEE
T ss_pred             HHCCCEEEeCCEEEEEECCC-C---EEEECCCCEEECCEEEEccCCcc
Confidence            46789999999999998765 3   37788998999999999999653

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.46  E-value=1.2e-06  Score=88.29  Aligned_cols=56  Identities=11%  Similarity=0.086  Sum_probs=44.6

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc----EEEcCeEEecCCh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA----QVHSSIVLSNATP  293 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~----~~~ad~VV~aa~~  293 (531)
                      ...+.+.+.+.++++|++|+++++|++|..+  +.+..+...||+    ++.||.||+|+|.
T Consensus       271 ~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~--~~~~~~~~~dg~~~~~~i~ad~viwa~Gv  330 (502)
T 4g6h_A          271 EKKLSSYAQSHLENTSIKVHLRTAVAKVEEK--QLLAKTKHEDGKITEETIPYGTLIWATGN  330 (502)
T ss_dssp             CHHHHHHHHHHHHHTTCEEETTEEEEEECSS--EEEEEEECTTSCEEEEEEECSEEEECCCE
T ss_pred             CHHHHHHHHHHHHhcceeeecCceEEEEeCC--ceEEEEEecCcccceeeeccCEEEEccCC
Confidence            4678888999999999999999999998643  333345556764    6899999999884

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.44  E-value=1.3e-07  Score=93.37  Aligned_cols=34  Identities=35%  Similarity=0.475  Sum_probs=32.1

Q ss_pred             CcEEEECCChhHHHHHHHHHH---cCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLAR---AGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~---~G~~V~v~E~~~~   51 (531)
                      .||+|||||++||+||..|++   .|++|+|+|+++.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~   38 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF   38 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence            589999999999999999999   8999999999874

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=98.44  E-value=1.4e-06  Score=88.88  Aligned_cols=61  Identities=20%  Similarity=0.305  Sum_probs=44.6

Q ss_pred             HHHHHHHH-HHcCcEEEcCcceeEEEecCCCceeEEEeCC---Cc--EEEcC-eEEecCChHhHHhhcC
Q 048009          240 SMAIGSAA-REAGAHIVTRAEVSQLMINDSGRVNGVQLAD---GA--QVHSS-IVLSNATPYKTFMDLV  301 (531)
Q Consensus       240 ~~~l~~~~-~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~---g~--~~~ad-~VV~aa~~~~~~~~ll  301 (531)
                      ..++.+.+ ++.|++|++++.|++|..++++++++|++.+   |+  ++.|+ .||+|+|...+ .+|+
T Consensus       211 ~~a~l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~s-p~lL  278 (546)
T 2jbv_A          211 SVSYIHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDT-PKLL  278 (546)
T ss_dssp             HHHHTGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHH-HHHH
T ss_pred             HHHHHHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecCccCC-chhh
Confidence            33443333 3568999999999999987546788998754   54  68898 89999998753 4443

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.43  E-value=5.6e-07  Score=94.05  Aligned_cols=37  Identities=32%  Similarity=0.576  Sum_probs=34.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHH-----cCCcEEEEccCCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLAR-----AGLSVAVLERRHVI   52 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~-----~G~~V~v~E~~~~~   52 (531)
                      .++||+|||||++||++|..|++     .|++|+||||.+.+
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~   48 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   48 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC
Confidence            35899999999999999999999     99999999998653

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=98.42  E-value=8.6e-07  Score=90.30  Aligned_cols=36  Identities=36%  Similarity=0.468  Sum_probs=33.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHH-cCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLAR-AGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~-~G~~V~v~E~~~~~   52 (531)
                      +||+||||||.+|+++|.+|++ .|.+|+|+|+.+..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            5899999999999999999999 68999999998765

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.42  E-value=1.9e-07  Score=90.64  Aligned_cols=39  Identities=36%  Similarity=0.449  Sum_probs=35.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG   54 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG   54 (531)
                      .++||+|||||++|+++|++|+++|++|+|+|+....+|
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g   43 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCc
Confidence            468999999999999999999999999999999875544

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.39  E-value=2.9e-06  Score=84.07  Aligned_cols=52  Identities=23%  Similarity=0.355  Sum_probs=43.5

Q ss_pred             HHHHHHHcCcEEEcCcceeEEEe--cCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          243 IGSAAREAGAHIVTRAEVSQLMI--NDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       243 l~~~~~~~G~~i~~~~~V~~I~~--~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +.+.+++.|++++++++|++|..  ++ +++..|++.+|+++.+|.||+++|...
T Consensus       197 l~~~l~~~GV~i~~~~~v~~i~~~~~~-~~v~~v~~~~G~~i~~D~Vv~a~G~~p  250 (431)
T 1q1r_A          197 YEHLHREAGVDIRTGTQVCGFEMSTDQ-QKVTAVLCEDGTRLPADLVIAGIGLIP  250 (431)
T ss_dssp             HHHHHHHHTCEEECSCCEEEEEECTTT-CCEEEEEETTSCEEECSEEEECCCEEE
T ss_pred             HHHHHHhCCeEEEeCCEEEEEEeccCC-CcEEEEEeCCCCEEEcCEEEECCCCCc
Confidence            44556778999999999999987  55 777779999999999999999998553

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.37  E-value=6.5e-07  Score=92.39  Aligned_cols=36  Identities=31%  Similarity=0.415  Sum_probs=33.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHc--CCcEEEEccCCCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIG   53 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~~G   53 (531)
                      .||+|||||++||+||..|+++  |++|+|+|+++.++
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            6899999999999999999998  89999999987643

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.36  E-value=3.5e-07  Score=91.03  Aligned_cols=43  Identities=40%  Similarity=0.503  Sum_probs=39.5

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      ...+||+|||||++||+||+.|+++|++|+|||+.+.+||...
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~  162 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLV  162 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            3568999999999999999999999999999999999998753

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.35  E-value=6.4e-07  Score=89.12  Aligned_cols=34  Identities=21%  Similarity=0.448  Sum_probs=32.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHH---cCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLAR---AGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~---~G~~V~v~E~~~   50 (531)
                      +.||+|||||++|++||..|++   .|++|+|+|+++
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~   40 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISAND   40 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCC
Confidence            4799999999999999999999   899999999976

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.35  E-value=3.1e-06  Score=82.66  Aligned_cols=52  Identities=15%  Similarity=0.172  Sum_probs=42.3

Q ss_pred             HHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          242 AIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       242 ~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+.+.+++.|++|+++++|++|..++ +. ..|++.+|+++.+|.||+|+|...
T Consensus       192 ~l~~~l~~~gv~i~~~~~v~~i~~~~-~~-~~v~~~~g~~i~~d~vv~a~G~~p  243 (384)
T 2v3a_A          192 AVQAGLEGLGVRFHLGPVLASLKKAG-EG-LEAHLSDGEVIPCDLVVSAVGLRP  243 (384)
T ss_dssp             HHHHHHHTTTCEEEESCCEEEEEEET-TE-EEEEETTSCEEEESEEEECSCEEE
T ss_pred             HHHHHHHHcCCEEEeCCEEEEEEecC-CE-EEEEECCCCEEECCEEEECcCCCc
Confidence            34555677899999999999998765 44 458888998899999999998654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.35  E-value=2.8e-07  Score=87.36  Aligned_cols=42  Identities=38%  Similarity=0.670  Sum_probs=38.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEE-EccCCCCCceeec
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAV-LERRHVIGGAAVT   58 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v-~E~~~~~GG~~~s   58 (531)
                      .++||+|||||++||+||..|+++|++|+| +|+ +.+||.+..
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~   45 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITS   45 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGG
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeee
Confidence            468999999999999999999999999999 999 778988754

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.31  E-value=3.7e-06  Score=82.79  Aligned_cols=53  Identities=15%  Similarity=0.129  Sum_probs=43.6

Q ss_pred             HHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          241 MAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       241 ~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +.+.+.++++|++|+++++|++|..+  +++.+|+++||+++.||.||+++|...
T Consensus       189 ~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~v~~~dg~~i~aD~Vv~a~G~~p  241 (410)
T 3ef6_A          189 AWLRGLLTELGVQVELGTGVVGFSGE--GQLEQVMASDGRSFVADSALICVGAEP  241 (410)
T ss_dssp             HHHHHHHHHHTCEEECSCCEEEEECS--SSCCEEEETTSCEEECSEEEECSCEEE
T ss_pred             HHHHHHHHHCCCEEEeCCEEEEEecc--CcEEEEEECCCCEEEcCEEEEeeCCee
Confidence            33455567889999999999999864  455679999999999999999998654

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.28  E-value=2.9e-07  Score=88.88  Aligned_cols=50  Identities=8%  Similarity=0.060  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+..+|.+.++++|++|+. ++|++|...+             .+.||.||+|+|.+.  ..|++
T Consensus       142 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~-------------~~~a~~VV~A~G~~s--~~l~~  191 (351)
T 3g3e_A          142 KNYLQWLTERLTERGVKFFQ-RKVESFEEVA-------------REGADVIVNCTGVWA--GALQR  191 (351)
T ss_dssp             HHHHHHHHHHHHHTTCEEEE-CCCCCHHHHH-------------HTTCSEEEECCGGGG--GGTSC
T ss_pred             HHHHHHHHHHHHHCCCEEEE-EEeCCHHHhh-------------cCCCCEEEECCCcCh--HhhcC
Confidence            47899999999999999998 8998875432             157999999999998  56654

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.27  E-value=6.2e-07  Score=88.96  Aligned_cols=43  Identities=7%  Similarity=0.149  Sum_probs=35.1

Q ss_pred             HHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          248 REAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       248 ~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ++.|++++.+ +|++|+.++ .   .|++++|+++.+|++|+|+|...
T Consensus        67 ~~~gv~~i~~-~v~~Id~~~-~---~V~~~~g~~i~YD~LViAtG~~~  109 (430)
T 3hyw_A           67 PKFNIEFINE-KAESIDPDA-N---TVTTQSGKKIEYDYLVIATGPKL  109 (430)
T ss_dssp             GGGTEEEECS-CEEEEETTT-T---EEEETTCCEEECSEEEECCCCEE
T ss_pred             HHCCcEEEEe-EEEEEECCC-C---EEEECCCCEEECCEEEEeCCCCc
Confidence            4568898766 899998765 3   37899999999999999999753

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.20  E-value=1.1e-05  Score=79.33  Aligned_cols=47  Identities=19%  Similarity=0.303  Sum_probs=39.0

Q ss_pred             HHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          243 IGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       243 l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +.+.+++.|++|+++++|++|.  + +   .|++.+|+++.+|.||+++|...
T Consensus       193 l~~~l~~~GV~i~~~~~v~~i~--~-~---~v~~~~g~~i~~D~vi~a~G~~p  239 (408)
T 2gqw_A          193 VARYHAAQGVDLRFERSVTGSV--D-G---VVLLDDGTRIAADMVVVGIGVLA  239 (408)
T ss_dssp             HHHHHHHTTCEEEESCCEEEEE--T-T---EEEETTSCEEECSEEEECSCEEE
T ss_pred             HHHHHHHcCcEEEeCCEEEEEE--C-C---EEEECCCCEEEcCEEEECcCCCc
Confidence            4455678899999999999998  4 4   47888998999999999988553

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.20  E-value=9.1e-07  Score=93.64  Aligned_cols=45  Identities=29%  Similarity=0.442  Sum_probs=41.0

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecc
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTE   59 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~   59 (531)
                      ...+||+|||||++||+||..|+++|++|+|||+++.+||.+...
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~  431 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQV  431 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHH
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeec
Confidence            346899999999999999999999999999999999999987653

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.18  E-value=1e-05  Score=80.79  Aligned_cols=52  Identities=17%  Similarity=0.219  Sum_probs=41.8

Q ss_pred             HHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          242 AIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       242 ~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+.+.+++.|++|+++++|++|..++ +++..|.+ +|+++.+|.||+++|...
T Consensus       196 ~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~v~~v~~-~g~~i~~D~vv~a~G~~p  247 (452)
T 2cdu_A          196 ILAKDYEAHGVNLVLGSKVAAFEEVD-DEIITKTL-DGKEIKSDIAILCIGFRP  247 (452)
T ss_dssp             HHHHHHHHTTCEEEESSCEEEEEEET-TEEEEEET-TSCEEEESEEEECCCEEE
T ss_pred             HHHHHHHHCCCEEEcCCeeEEEEcCC-CeEEEEEe-CCCEEECCEEEECcCCCC
Confidence            34555678899999999999998755 66665665 778899999999998654

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.17  E-value=1.3e-06  Score=85.35  Aligned_cols=35  Identities=31%  Similarity=0.448  Sum_probs=33.2

Q ss_pred             CcEEEECCChhHHHHHHHHHHc--CCcEEEEccCCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVI   52 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~~   52 (531)
                      +||+|||||++||++|+.|+++  |++|+|+|+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            4899999999999999999999  9999999998876

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.16  E-value=9e-07  Score=87.80  Aligned_cols=34  Identities=26%  Similarity=0.450  Sum_probs=32.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++||+|||||++||++|+.|+++|++|+|+|+.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            4799999999999999999999999999999976

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.14  E-value=1.5e-05  Score=79.56  Aligned_cols=51  Identities=18%  Similarity=0.181  Sum_probs=39.2

Q ss_pred             HHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          242 AIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       242 ~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+.+.+++.|++|+++++|++|..+  +++..|.+ +|+++.+|.||+|+|...
T Consensus       196 ~l~~~l~~~gv~i~~~~~v~~i~~~--~~v~~v~~-~~~~i~~d~vi~a~G~~p  246 (447)
T 1nhp_A          196 VLTEEMEANNITIATGETVERYEGD--GRVQKVVT-DKNAYDADLVVVAVGVRP  246 (447)
T ss_dssp             HHHHHHHTTTEEEEESCCEEEEECS--SBCCEEEE-SSCEEECSEEEECSCEEE
T ss_pred             HHHHHHHhCCCEEEcCCEEEEEEcc--CcEEEEEE-CCCEEECCEEEECcCCCC
Confidence            3455567889999999999999864  44545666 456799999999998654

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.14  E-value=2.1e-06  Score=81.16  Aligned_cols=41  Identities=32%  Similarity=0.262  Sum_probs=36.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      ++||+|||||++|+.||+.|+++|++|+|+|+++..+...+
T Consensus         1 m~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~h   41 (443)
T 3g5s_A            1 MERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPAH   41 (443)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSSC
T ss_pred             CCCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCccc
Confidence            37999999999999999999999999999999986655443

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.13  E-value=1.5e-06  Score=89.91  Aligned_cols=41  Identities=32%  Similarity=0.516  Sum_probs=38.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      .+||+|||||++|++||+.|+++|++|+|+|+.+..||.+.
T Consensus        46 ~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~~   86 (623)
T 3pl8_A           46 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKI   86 (623)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSST
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCccc
Confidence            58999999999999999999999999999999999988553

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.13  E-value=5.1e-06  Score=83.93  Aligned_cols=40  Identities=20%  Similarity=0.087  Sum_probs=30.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCce
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGA   55 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~   55 (531)
                      ..+||||||+|++||++|+.|.++|...+++|+.+..|+.
T Consensus        38 ~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~   77 (501)
T 4b63_A           38 ELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQP   77 (501)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCC
T ss_pred             CcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCc
Confidence            3589999999999999999999988777777777666654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.11  E-value=1.4e-05  Score=80.38  Aligned_cols=35  Identities=31%  Similarity=0.411  Sum_probs=32.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.++
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  217 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ  217 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCc
Confidence            46899999999999999999999999999999764

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.10  E-value=1.8e-05  Score=79.85  Aligned_cols=50  Identities=14%  Similarity=0.210  Sum_probs=39.8

Q ss_pred             HHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          243 IGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       243 l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +.+.+++.|++|+++++|++|.. + +++..|.+ +|+++.+|.||+++|...
T Consensus       242 l~~~l~~~GV~i~~~~~v~~i~~-~-~~v~~v~~-~g~~i~~D~Vi~a~G~~p  291 (490)
T 2bc0_A          242 MAKNMEEHGIQLAFGETVKEVAG-N-GKVEKIIT-DKNEYDVDMVILAVGFRP  291 (490)
T ss_dssp             HHHHHHTTTCEEEETCCEEEEEC-S-SSCCEEEE-SSCEEECSEEEECCCEEE
T ss_pred             HHHHHHhCCeEEEeCCEEEEEEc-C-CcEEEEEE-CCcEEECCEEEECCCCCc
Confidence            45556788999999999999986 4 55555666 677899999999988654

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.09  E-value=1.3e-05  Score=80.03  Aligned_cols=35  Identities=31%  Similarity=0.399  Sum_probs=32.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.++
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  204 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE  204 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence            46899999999999999999999999999999754

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.05  E-value=1.8e-06  Score=85.96  Aligned_cols=42  Identities=26%  Similarity=0.340  Sum_probs=39.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHH-c------CCcEEEEccCCCCCceee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLAR-A------GLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~-~------G~~V~v~E~~~~~GG~~~   57 (531)
                      ..+||+|||||++|++||..|++ +      |++|+|||+.+.+||.+.
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~   50 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   50 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence            46899999999999999999999 7      999999999999999874

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.04  E-value=1.5e-05  Score=80.28  Aligned_cols=51  Identities=10%  Similarity=-0.033  Sum_probs=40.0

Q ss_pred             HHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC----CcEEEcCeEEecCChHh
Q 048009          243 IGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD----GAQVHSSIVLSNATPYK  295 (531)
Q Consensus       243 l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~----g~~~~ad~VV~aa~~~~  295 (531)
                      +.+.+++.|++|+++++|++|..++ +. ..|++.+    |+++.+|.||+++|...
T Consensus       232 l~~~l~~~gV~i~~~~~v~~i~~~~-~~-~~v~~~~~~~~g~~~~~D~vv~a~G~~p  286 (482)
T 1ojt_A          232 WQKQNEYRFDNIMVNTKTVAVEPKE-DG-VYVTFEGANAPKEPQRYDAVLVAAGRAP  286 (482)
T ss_dssp             HHHHHGGGEEEEECSCEEEEEEEET-TE-EEEEEESSSCCSSCEEESCEEECCCEEE
T ss_pred             HHHHHHhcCCEEEECCEEEEEEEcC-Ce-EEEEEeccCCCceEEEcCEEEECcCCCc
Confidence            3445667899999999999998765 43 3477766    77799999999998654

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.03  E-value=3.3e-05  Score=77.39  Aligned_cols=51  Identities=22%  Similarity=0.297  Sum_probs=39.1

Q ss_pred             HHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC-CC--cEEEcCeEEecCChHh
Q 048009          243 IGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA-DG--AQVHSSIVLSNATPYK  295 (531)
Q Consensus       243 l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~-~g--~~~~ad~VV~aa~~~~  295 (531)
                      +.+.++++|++++++++|++|..++ +++ .|++. +|  +++.+|.||+++|...
T Consensus       218 l~~~l~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~~g~~~~~~~D~vv~a~G~~p  271 (464)
T 2a8x_A          218 IEKQFKKLGVTILTATKVESIADGG-SQV-TVTVTKDGVAQELKAEKVLQAIGFAP  271 (464)
T ss_dssp             HHHHHHHHTCEEECSCEEEEEEECS-SCE-EEEEESSSCEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHcCCEEEeCcEEEEEEEcC-CeE-EEEEEcCCceEEEEcCEEEECCCCCc
Confidence            3445667899999999999998765 544 36664 66  5799999999988654

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.02  E-value=3e-06  Score=88.99  Aligned_cols=43  Identities=30%  Similarity=0.421  Sum_probs=39.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      ..+||+|||||++|++||..|+++|++|+|+|+++.+||.+..
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~  414 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNI  414 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeec
Confidence            4689999999999999999999999999999999999988653

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.02  E-value=2e-05  Score=76.13  Aligned_cols=34  Identities=41%  Similarity=0.655  Sum_probs=32.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      .+|+|||||..|+-+|..|++.|.+|+|+|+.+.
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  177 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM  177 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCe
Confidence            6899999999999999999999999999999764

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.98  E-value=4.8e-05  Score=78.32  Aligned_cols=35  Identities=31%  Similarity=0.423  Sum_probs=32.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+.
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  185 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQ  185 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCc
Confidence            35899999999999999999999999999999653

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.98  E-value=3.9e-06  Score=91.49  Aligned_cols=41  Identities=39%  Similarity=0.614  Sum_probs=39.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      ++||+|||||++||+||..|+++|++|+|||+++.+||++.
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence            58999999999999999999999999999999999999987

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.98  E-value=4.6e-05  Score=76.83  Aligned_cols=51  Identities=18%  Similarity=0.324  Sum_probs=42.2

Q ss_pred             HHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          243 IGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       243 l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +.+.++++|++|+++++|++|..++ +++ .|++.+|+++.||.||+++|...
T Consensus       232 ~~~~l~~~GV~v~~~~~V~~i~~~~-~~~-~v~l~dG~~i~aD~Vv~a~G~~p  282 (493)
T 1m6i_A          232 TMEKVRREGVKVMPNAIVQSVGVSS-GKL-LIKLKDGRKVETDHIVAAVGLEP  282 (493)
T ss_dssp             HHHHHHTTTCEEECSCCEEEEEEET-TEE-EEEETTSCEEEESEEEECCCEEE
T ss_pred             HHHHHHhcCCEEEeCCEEEEEEecC-CeE-EEEECCCCEEECCEEEECCCCCc
Confidence            3455678899999999999998765 554 58899999999999999988654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.96  E-value=4.3e-06  Score=86.74  Aligned_cols=44  Identities=39%  Similarity=0.613  Sum_probs=37.5

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccC-C-------CCCceeec
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR-H-------VIGGAAVT   58 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~-~-------~~GG~~~s   58 (531)
                      ..++||+|||||++||+||..|+++|++|+|+|+. +       .+||.|..
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~  156 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVN  156 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHH
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEec
Confidence            34699999999999999999999999999999983 3       36776654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.96  E-value=5.9e-05  Score=71.42  Aligned_cols=50  Identities=12%  Similarity=0.135  Sum_probs=40.0

Q ss_pred             HHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC----C--cEEEcCeEEecCChHh
Q 048009          245 SAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD----G--AQVHSSIVLSNATPYK  295 (531)
Q Consensus       245 ~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~----g--~~~~ad~VV~aa~~~~  295 (531)
                      +.+++.|++|+++++|++|..++ +++.+|++.+    |  +++.+|.||+++|...
T Consensus       192 ~~l~~~gv~i~~~~~v~~i~~~~-~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p  247 (320)
T 1trb_A          192 DKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP  247 (320)
T ss_dssp             HHHHTSSEEEECSCEEEEEEECS-SSEEEEEEECCTTCCCCEEEECSEEEECSCEEE
T ss_pred             HhcccCCeEEEcCceeEEEEcCC-CceEEEEEEeccCCCceEEEEcCEEEEEeCCCC
Confidence            34567899999999999999876 6777787765    4  4789999999988543

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.94  E-value=5.8e-06  Score=90.80  Aligned_cols=42  Identities=24%  Similarity=0.578  Sum_probs=38.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCCCCCceee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRHVIGGAAV   57 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~~~GG~~~   57 (531)
                      ..+||+|||||++||+||..|+++|+ +|+|||+.+.+||.+.
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~  228 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLST  228 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcccc
Confidence            35899999999999999999999999 7999999999999863

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.94  E-value=5.2e-06  Score=82.80  Aligned_cols=42  Identities=24%  Similarity=0.274  Sum_probs=38.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcC--CcEEEEccCCCCCceee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAG--LSVAVLERRHVIGGAAV   57 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G--~~V~v~E~~~~~GG~~~   57 (531)
                      ..+||+|||||++|++||..|+++|  ++|+|||+.+.+||+..
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~   48 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR   48 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee
Confidence            4589999999999999999999998  99999999999998763

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.93  E-value=3.4e-05  Score=77.42  Aligned_cols=35  Identities=31%  Similarity=0.370  Sum_probs=32.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.++
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  211 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE  211 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence            46899999999999999999999999999999764

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.91  E-value=5.2e-05  Score=76.23  Aligned_cols=50  Identities=24%  Similarity=0.258  Sum_probs=39.1

Q ss_pred             HHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          243 IGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       243 l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +.+.+++.|++|+++++|++|..+  +++..|.+.++ ++.+|.||+++|...
T Consensus       233 l~~~l~~~Gv~i~~~~~v~~i~~~--~~v~~v~~~~~-~i~~D~vi~a~G~~p  282 (480)
T 3cgb_A          233 IYKEADKHHIEILTNENVKAFKGN--ERVEAVETDKG-TYKADLVLVSVGVKP  282 (480)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEES--SBEEEEEETTE-EEECSEEEECSCEEE
T ss_pred             HHHHHHHcCcEEEcCCEEEEEEcC--CcEEEEEECCC-EEEcCEEEECcCCCc
Confidence            445567889999999999999864  45655766544 699999999998664

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.90  E-value=7.4e-05  Score=77.27  Aligned_cols=48  Identities=15%  Similarity=0.224  Sum_probs=39.8

Q ss_pred             HHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChH
Q 048009          243 IGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPY  294 (531)
Q Consensus       243 l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~  294 (531)
                      +.+.+++.|++|+++++|++|..++ +   +|++.+|+++.+|.||+|+|..
T Consensus       234 l~~~l~~~GV~i~~~~~v~~i~~~~-~---~v~~~~g~~i~~D~Vi~a~G~~  281 (588)
T 3ics_A          234 VHEHMKNHDVELVFEDGVDALEENG-A---VVRLKSGSVIQTDMLILAIGVQ  281 (588)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEGGG-T---EEEETTSCEEECSEEEECSCEE
T ss_pred             HHHHHHHcCCEEEECCeEEEEecCC-C---EEEECCCCEEEcCEEEEccCCC
Confidence            4455678899999999999998754 3   3778899999999999999854

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.89  E-value=3.8e-05  Score=76.15  Aligned_cols=47  Identities=11%  Similarity=0.124  Sum_probs=38.0

Q ss_pred             HHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          243 IGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       243 l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +.+.++++|++++++++|+++..+      .|++++|+++.+|.||+++|...
T Consensus       194 ~~~~l~~~gV~i~~~~~v~~~~~~------~v~~~~g~~~~~D~vl~a~G~~P  240 (437)
T 4eqs_A          194 ILDELDKREIPYRLNEEINAINGN------EITFKSGKVEHYDMIIEGVGTHP  240 (437)
T ss_dssp             HHHHHHHTTCCEEESCCEEEEETT------EEEETTSCEEECSEEEECCCEEE
T ss_pred             HHHHhhccceEEEeccEEEEecCC------eeeecCCeEEeeeeEEEEeceec
Confidence            345567889999999999988632      27789999999999999988543

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.87  E-value=1e-05  Score=81.57  Aligned_cols=37  Identities=16%  Similarity=0.267  Sum_probs=34.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcC---CcEEEEccCCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAG---LSVAVLERRHVIG   53 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G---~~V~v~E~~~~~G   53 (531)
                      ++||+|||||++|++||..|++.|   ++|+|+|+++.++
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~   74 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNIS   74 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCC
Confidence            589999999999999999999988   9999999987654

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.86  E-value=9.3e-05  Score=75.24  Aligned_cols=35  Identities=26%  Similarity=0.216  Sum_probs=33.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+++++.
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            46899999999999999999999999999999876

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.83  E-value=1.4e-05  Score=78.60  Aligned_cols=37  Identities=24%  Similarity=0.315  Sum_probs=33.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCc--EEEEccCCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLS--VAVLERRHVI   52 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~--V~v~E~~~~~   52 (531)
                      .++||+|||||++|++||..|+++|++  |+|+|+++.+
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~   44 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER   44 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCC
Confidence            468999999999999999999999984  9999998754

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.82  E-value=1.2e-05  Score=82.46  Aligned_cols=73  Identities=23%  Similarity=0.276  Sum_probs=50.8

Q ss_pred             HHHHHHHHHH-cCcEEEcCcceeEEEecCCCceeEEEeCC---Cc--EE---EcCeEEecCChHhHHhhcCC-CCCCChH
Q 048009          240 SMAIGSAARE-AGAHIVTRAEVSQLMINDSGRVNGVQLAD---GA--QV---HSSIVLSNATPYKTFMDLVP-GNILPDD  309 (531)
Q Consensus       240 ~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g~~~~V~~~~---g~--~~---~ad~VV~aa~~~~~~~~ll~-~~~~~~~  309 (531)
                      ..++.+.+.+ .|++|++++.|++|..++ +++++|++.+   |+  ++   .++.||+|+|.+.+ .+|+- ...-|++
T Consensus       198 ~~~~l~~~~~~~~~~i~~~~~V~~i~~~~-~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~s-p~lL~~sGig~~~  275 (546)
T 1kdg_A          198 VATYLQTALARPNFTFKTNVMVSNVVRNG-SQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGT-SRILFQSGIGPTD  275 (546)
T ss_dssp             HHTHHHHHHTCTTEEEECSCCEEEEEEET-TEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHH-HHHHHHTTBSCHH
T ss_pred             HHHHHHHHhhCCCcEEEeCCEEEEEEEeC-CEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcC-HHHHHHcCCCcHH
Confidence            3445555555 589999999999999987 8899999875   64  33   78999999999875 34432 2223444


Q ss_pred             HHHHh
Q 048009          310 FILSI  314 (531)
Q Consensus       310 ~~~~i  314 (531)
                      ..+.+
T Consensus       276 ~L~~~  280 (546)
T 1kdg_A          276 MIQTV  280 (546)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            44443

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.82  E-value=1.2e-05  Score=80.33  Aligned_cols=36  Identities=22%  Similarity=0.251  Sum_probs=33.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHc--CCcEEEEccCCCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIG   53 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~~G   53 (531)
                      +||+|||||++|++||..|++.  |++|+|+|+++.++
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~   38 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNIS   38 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCC
Confidence            5899999999999999999998  99999999987653

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.82  E-value=0.00019  Score=72.97  Aligned_cols=35  Identities=23%  Similarity=0.241  Sum_probs=33.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||+|.+|+-.|..|++.+.+|+|+++++.
T Consensus       185 ~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            46899999999999999999999999999999886

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.81  E-value=6.4e-06  Score=83.83  Aligned_cols=37  Identities=35%  Similarity=0.543  Sum_probs=33.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG   53 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~G   53 (531)
                      .+||+||||||.+|+++|.+|++ |.+|+|+|+.+..+
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~~   61 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLPT   61 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCGG
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCcC
Confidence            45999999999999999999999 99999999987653

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.77  E-value=1.5e-05  Score=79.50  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=33.2

Q ss_pred             CcEEEECCChhHHHHHHHHHHc--CCcEEEEccCCCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIG   53 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~~G   53 (531)
                      +||+|||||++|++||..|++.  |++|+|+|+++.+|
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~   38 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS   38 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccC
Confidence            4899999999999999999998  99999999988654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.75  E-value=1.8e-05  Score=79.63  Aligned_cols=37  Identities=27%  Similarity=0.513  Sum_probs=33.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHc--CCcEEEEccCCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIG   53 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~~G   53 (531)
                      ++||+|||||++|++||..|++.  |.+|+|+|+++..+
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~   74 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYS   74 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCS
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCC
Confidence            47999999999999999999997  89999999987654

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.74  E-value=1.5e-05  Score=80.29  Aligned_cols=38  Identities=24%  Similarity=0.364  Sum_probs=34.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHc--CCcEEEEccCCCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIG   53 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~~G   53 (531)
                      .++||+|||||++|++||..|+++  |.+|+|+|+++.++
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~   49 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP   49 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            468999999999999999999987  89999999987654

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.71  E-value=2.5e-05  Score=76.21  Aligned_cols=34  Identities=15%  Similarity=0.245  Sum_probs=31.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcC--CcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAG--LSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G--~~V~v~E~~~   50 (531)
                      ++||+|||||++|++||..|+++|  .+|+|+|+++
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            589999999999999999999998  5699999875

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.69  E-value=0.00024  Score=67.60  Aligned_cols=48  Identities=19%  Similarity=0.094  Sum_probs=37.8

Q ss_pred             HHHHcCcEEEcCcceeEEEecCCCceeEEEeC---CC--cEEEcCeEEecCChHh
Q 048009          246 AAREAGAHIVTRAEVSQLMINDSGRVNGVQLA---DG--AQVHSSIVLSNATPYK  295 (531)
Q Consensus       246 ~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g--~~~~ad~VV~aa~~~~  295 (531)
                      .+++.|++++++++|++|..+  +++.+|++.   +|  +++.+|.||+++|...
T Consensus       200 ~l~~~gv~v~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p  252 (335)
T 2zbw_A          200 AHEEGRLEVLTPYELRRVEGD--ERVRWAVVFHNQTQEELALEVDAVLILAGYIT  252 (335)
T ss_dssp             HHHTTSSEEETTEEEEEEEES--SSEEEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             ccccCCeEEecCCcceeEccC--CCeeEEEEEECCCCceEEEecCEEEEeecCCC
Confidence            345679999999999999874  555567775   67  5789999999988654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.68  E-value=2.4e-05  Score=75.69  Aligned_cols=52  Identities=15%  Similarity=0.207  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+.+.+.+.+++.|++++++++|++|.  . .   +|++++|+ +.+|.||+++|...
T Consensus       183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~--~-~---~v~~~~g~-i~~D~vi~a~G~~p  234 (367)
T 1xhc_A          183 EELSNMIKDMLEETGVKFFLNSELLEAN--E-E---GVLTNSGF-IEGKVKICAIGIVP  234 (367)
T ss_dssp             HHHHHHHHHHHHHTTEEEECSCCEEEEC--S-S---EEEETTEE-EECSCEEEECCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEE--e-e---EEEECCCE-EEcCEEEECcCCCc
Confidence            4678888888999999999999999987  2 2   37788888 99999999988543

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.67  E-value=3e-05  Score=76.91  Aligned_cols=35  Identities=20%  Similarity=0.329  Sum_probs=31.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHcC--CcEEEEccCCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAG--LSVAVLERRHVI   52 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G--~~V~v~E~~~~~   52 (531)
                      ++|+|||||.+|++||..|++.|  .+|+|+|+++..
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~   37 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   37 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            57999999999999999999998  569999998653

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.64  E-value=0.00018  Score=69.41  Aligned_cols=48  Identities=19%  Similarity=0.195  Sum_probs=38.7

Q ss_pred             HHHcCcEEEcCcceeEEEecCCCceeEEEeC--CC--cEEEcCeEEecCChHh
Q 048009          247 AREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DG--AQVHSSIVLSNATPYK  295 (531)
Q Consensus       247 ~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g--~~~~ad~VV~aa~~~~  295 (531)
                      +++.|++++++++|++|..++ +++.+|++.  +|  +++.+|.||+++|...
T Consensus       212 ~~~~gv~i~~~~~v~~i~~~~-~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p  263 (360)
T 3ab1_A          212 RANGTIDVYLETEVASIEESN-GVLTRVHLRSSDGSKWTVEADRLLILIGFKS  263 (360)
T ss_dssp             HHHTSEEEESSEEEEEEEEET-TEEEEEEEEETTCCEEEEECSEEEECCCBCC
T ss_pred             hhcCceEEEcCcCHHHhccCC-CceEEEEEEecCCCeEEEeCCEEEECCCCCC
Confidence            456789999999999999876 776667774  77  4789999999988543

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.63  E-value=3.6e-05  Score=79.12  Aligned_cols=40  Identities=35%  Similarity=0.557  Sum_probs=35.6

Q ss_pred             ccCCCCcEEEECCChhHHHHHHHHHH-cCCcEEEEccCCCC
Q 048009           13 LKEKKWDALVIGGGHNGLTAAAYLAR-AGLSVAVLERRHVI   52 (531)
Q Consensus        13 ~~~~~~dvvIIGaGiaGL~aA~~L~~-~G~~V~v~E~~~~~   52 (531)
                      +++.++|++|||+|.+|+++|.+|++ .|.+|+|+|+....
T Consensus        20 ~~~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           20 VAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             TTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cCcccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            33457999999999999999999999 79999999998654

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.56  E-value=0.0007  Score=68.93  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=33.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+++++.
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            46899999999999999999999999999999875

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.55  E-value=0.00034  Score=66.64  Aligned_cols=45  Identities=7%  Similarity=0.011  Sum_probs=37.3

Q ss_pred             cCcEEEcCcceeEEEecCCCceeEEEeCC-----CcEEEcCeEEecCChHh
Q 048009          250 AGAHIVTRAEVSQLMINDSGRVNGVQLAD-----GAQVHSSIVLSNATPYK  295 (531)
Q Consensus       250 ~G~~i~~~~~V~~I~~~~~g~~~~V~~~~-----g~~~~ad~VV~aa~~~~  295 (531)
                      .|++++++++|++|..++ +++.+|++.+     ++++.+|.||+++|...
T Consensus       222 ~gv~i~~~~~v~~i~~~~-~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p  271 (338)
T 3itj_A          222 EKIEILYNTVALEAKGDG-KLLNALRIKNTKKNEETDLPVSGLFYAIGHTP  271 (338)
T ss_dssp             TTEEEECSEEEEEEEESS-SSEEEEEEEETTTTEEEEEECSEEEECSCEEE
T ss_pred             CCeEEeecceeEEEEccc-CcEEEEEEEECCCCceEEEEeCEEEEEeCCCC
Confidence            389999999999999887 7777788866     45789999999988543

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.50  E-value=0.0013  Score=65.62  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=32.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHc--CCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~   51 (531)
                      ..+|+|||||.+|+-+|..|++.  |.+|+++++++.
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~  263 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASA  263 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSS
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence            46899999999999999999999  899999999875

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.50  E-value=0.00064  Score=65.65  Aligned_cols=53  Identities=13%  Similarity=0.242  Sum_probs=39.3

Q ss_pred             HHHHHHHHHcC-cEEEcCcceeEEEecCCCceeEEEeCCCcEEE-cCeEEecCChHh
Q 048009          241 MAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQLADGAQVH-SSIVLSNATPYK  295 (531)
Q Consensus       241 ~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~-ad~VV~aa~~~~  295 (531)
                      +.+.+.+++.| ++++++++|++|..++ +. ..|++.||+++. +|.||+++|...
T Consensus       218 ~~l~~~l~~~g~v~~~~~~~v~~i~~~~-~~-~~v~~~~g~~~~~~d~vi~a~G~~~  272 (369)
T 3d1c_A          218 QRLGNVIKQGARIEMNVHYTVKDIDFNN-GQ-YHISFDSGQSVHTPHEPILATGFDA  272 (369)
T ss_dssp             HHHHHHHHTTCCEEEECSCCEEEEEEET-TE-EEEEESSSCCEEESSCCEECCCBCG
T ss_pred             HHHHHHHhhCCcEEEecCcEEEEEEecC-Cc-eEEEecCCeEeccCCceEEeeccCC
Confidence            33445566776 9999999999997654 43 357888987665 599999888554

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.45  E-value=0.00068  Score=64.00  Aligned_cols=46  Identities=15%  Similarity=0.250  Sum_probs=36.9

Q ss_pred             HcCcEEEcCcceeEEEecCCCceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009          249 EAGAHIVTRAEVSQLMINDSGRVNGVQLA---DGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       249 ~~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~  295 (531)
                      +.|++++++++|++|..++ +++.+|++.   +|+  ++.+|.||+++|...
T Consensus       202 ~~gv~i~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p  252 (319)
T 3cty_A          202 KRNIPYIMNAQVTEIVGDG-KKVTGVKYKDRTTGEEKLIETDGVFIYVGLIP  252 (319)
T ss_dssp             HTTCCEECSEEEEEEEESS-SSEEEEEEEETTTCCEEEECCSEEEECCCEEE
T ss_pred             cCCcEEEcCCeEEEEecCC-ceEEEEEEEEcCCCceEEEecCEEEEeeCCcc
Confidence            5689999999999999876 666677775   675  689999999887543

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.44  E-value=8.1e-05  Score=72.99  Aligned_cols=52  Identities=8%  Similarity=0.013  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCC
Q 048009          239 VSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNAT  292 (531)
Q Consensus       239 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~  292 (531)
                      +.+.+.+.+++.|++++++++|+.+..+. .. ..|++.+|+++.+|.||++++
T Consensus       204 ~~~~~~~~l~~~gi~v~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vi~~~g  255 (401)
T 3vrd_B          204 WERLYGFGTENALIEWHPGPDAAVVKTDT-EA-MTVETSFGETFKAAVINLIPP  255 (401)
T ss_dssp             HHHHSCTTSTTCSEEEECTTTTCEEEEET-TT-TEEEETTSCEEECSEEEECCC
T ss_pred             HHHHHHHHHHhcCcEEEeCceEEEEEecc-cc-eEEEcCCCcEEEeeEEEEecC
Confidence            44444455678899999999999998876 33 348899999999999999765

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.41  E-value=0.00086  Score=63.02  Aligned_cols=46  Identities=17%  Similarity=0.290  Sum_probs=38.2

Q ss_pred             HHcCcEEEcCcceeEEEecCCCceeEEEeC--CCc--EEEcCeEEecCChH
Q 048009          248 REAGAHIVTRAEVSQLMINDSGRVNGVQLA--DGA--QVHSSIVLSNATPY  294 (531)
Q Consensus       248 ~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~--~~~ad~VV~aa~~~  294 (531)
                      ++.|++++++++|++|..++ +++.+|++.  +|+  ++.+|.||+++|..
T Consensus       194 ~~~gv~~~~~~~v~~i~~~~-~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~  243 (315)
T 3r9u_A          194 KNEKIELITSASVDEVYGDK-MGVAGVKVKLKDGSIRDLNVPGIFTFVGLN  243 (315)
T ss_dssp             HCTTEEEECSCEEEEEEEET-TEEEEEEEECTTSCEEEECCSCEEECSCEE
T ss_pred             hcCCeEEEeCcEEEEEEcCC-CcEEEEEEEcCCCCeEEeecCeEEEEEcCC
Confidence            46689999999999998876 777777776  786  78999999998844

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.38  E-value=0.00071  Score=67.29  Aligned_cols=35  Identities=29%  Similarity=0.443  Sum_probs=32.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+|+.++
T Consensus       148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  182 (449)
T 3kd9_A          148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGER  182 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCc
Confidence            35899999999999999999999999999999654

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.37  E-value=0.001  Score=62.42  Aligned_cols=35  Identities=37%  Similarity=0.360  Sum_probs=31.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  178 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  178 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcc
Confidence            36899999999999999999999999999998653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.30  E-value=0.0017  Score=67.09  Aligned_cols=32  Identities=38%  Similarity=0.470  Sum_probs=30.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      .+|+|||||..|+-+|..|++.|.+|+|+|+.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            57999999999999999999999999999985

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.28  E-value=0.0015  Score=61.40  Aligned_cols=35  Identities=31%  Similarity=0.496  Sum_probs=32.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||+|..|+-.|..|++.|.+|+++++++.
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  177 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDG  177 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence            47899999999999999999999999999998653

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.18  E-value=0.002  Score=61.10  Aligned_cols=35  Identities=31%  Similarity=0.574  Sum_probs=31.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+++++.
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~  193 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDA  193 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCc
Confidence            46899999999999999999999999999998653

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.16  E-value=0.0022  Score=64.03  Aligned_cols=35  Identities=26%  Similarity=0.393  Sum_probs=32.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  206 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDR  206 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCc
Confidence            46899999999999999999999999999999764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.12  E-value=0.0027  Score=60.02  Aligned_cols=34  Identities=29%  Similarity=0.533  Sum_probs=31.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+++.+
T Consensus       152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  185 (325)
T 2q7v_A          152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRD  185 (325)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCC
Confidence            4689999999999999999999999999999865

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.07  E-value=0.0037  Score=63.24  Aligned_cols=33  Identities=36%  Similarity=0.521  Sum_probs=30.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      ..+++|||||..|+-.|..|++.|.+|+|+++.
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            357999999999999999999999999999973

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.99  E-value=0.0029  Score=64.07  Aligned_cols=35  Identities=37%  Similarity=0.360  Sum_probs=31.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+|+.+.
T Consensus       355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~  389 (521)
T 1hyu_A          355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  389 (521)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcc
Confidence            46899999999999999999999999999998643

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=96.88  E-value=0.0053  Score=57.71  Aligned_cols=35  Identities=34%  Similarity=0.490  Sum_probs=31.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus       153 ~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~  187 (323)
T 3f8d_A          153 KNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRD  187 (323)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCC
Confidence            34789999999999999999999999999999864

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.88  E-value=0.0028  Score=59.93  Aligned_cols=35  Identities=23%  Similarity=0.405  Sum_probs=31.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~  188 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDK  188 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCc
Confidence            46899999999999999999999999999998643

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=96.86  E-value=0.0024  Score=59.27  Aligned_cols=32  Identities=16%  Similarity=0.113  Sum_probs=29.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      ..+|+|||+|..|+-.|..|++.| +|+++++.
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~  172 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNG  172 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTT
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECC
Confidence            468999999999999999999999 99998764

>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=96.86  E-value=7.1e-05  Score=63.90  Aligned_cols=38  Identities=21%  Similarity=0.133  Sum_probs=29.7

Q ss_pred             CCCCCCeeecCCCCCC-CCCcCCc--hHHHHHHHHHHHhhh
Q 048009          491 RTPLQGLYMCGSGTHP-GGGVMGA--PGRNAAGIVLQDLKK  528 (531)
Q Consensus       491 ~t~~~~ly~aG~~~~~-g~g~~~~--sg~~aa~~i~~~~~~  528 (531)
                      +.|..+|||||+.|.. .+.+.||  ||..||++|++.++.
T Consensus       114 ~~p~grl~FAGe~ts~~~g~~eGAl~SG~raA~~i~~~l~~  154 (181)
T 2e1m_C          114 VRPEGPVYFAGEHVSLKHAWIEGAVETAVRAAIAVNEAPVG  154 (181)
T ss_dssp             HSCBTTEEECSGGGTTSTTSHHHHHHHHHHHHHHHHTCCC-
T ss_pred             hCCCCcEEEEEHHHcCCccCHHHHHHHHHHHHHHHHHHhcc
Confidence            4457899999999963 2456787  999999999987654

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.60  E-value=0.0036  Score=68.22  Aligned_cols=33  Identities=24%  Similarity=0.188  Sum_probs=30.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+|+|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~  317 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARS  317 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence            689999999999999999999999999999854

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=96.56  E-value=0.038  Score=56.16  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=32.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||+|.+|+-.|..|++.|.+|+|+++.+.
T Consensus       186 gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~  220 (542)
T 1w4x_A          186 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH  220 (542)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCc
Confidence            46899999999999999999999999999999764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.49  E-value=0.0036  Score=66.18  Aligned_cols=34  Identities=21%  Similarity=0.201  Sum_probs=31.2

Q ss_pred             CCcEEEEC--CChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIG--GGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIG--aGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|||  ||..|+-+|..|++.|.+|+|+|+.+
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            35899999  99999999999999999999999864

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.44  E-value=0.0028  Score=59.22  Aligned_cols=38  Identities=29%  Similarity=0.325  Sum_probs=32.7

Q ss_pred             ccCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           13 LKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        13 ~~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      |.++..+|.|||+|..|.+.|..|+++|++|+++++++
T Consensus        11 ~~~~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           11 KKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             -CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            33344679999999999999999999999999999864

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.40  E-value=0.0032  Score=52.20  Aligned_cols=37  Identities=24%  Similarity=0.348  Sum_probs=33.2

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ....+|+|||+|..|...|..|.+.|++|+++++++.
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            3457899999999999999999999999999999753

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.38  E-value=0.0031  Score=51.10  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=31.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .++|+|||+|..|...|..|.+.|++|+++|+++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4689999999999999999999999999999864

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.37  E-value=0.0028  Score=61.43  Aligned_cols=38  Identities=24%  Similarity=0.234  Sum_probs=34.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG   54 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG   54 (531)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+++..
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~  183 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLE  183 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccch
Confidence            36899999999999999999999999999999887543

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.34  E-value=0.012  Score=64.60  Aligned_cols=33  Identities=24%  Similarity=0.388  Sum_probs=30.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      -+|+|||||..|+-+|..|++.|. +|+|+++++
T Consensus       333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            489999999999999999999996 899999864

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.27  E-value=0.0038  Score=59.48  Aligned_cols=44  Identities=25%  Similarity=0.296  Sum_probs=33.4

Q ss_pred             ccccccccCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009            7 TSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus         7 ~~~~~~~~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +.++.+|.+..++|+|||+|..|.+.|..|++.|++|+++++++
T Consensus        19 ~~~~~~m~~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           19 YFQSNAMEPFKHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             --------CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             hhhhhcccccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            44555666556899999999999999999999999999999964

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.21  E-value=0.0066  Score=49.21  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=32.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      +-+|+|||.|-.|...|..|.+.|++|+++|+++.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            46899999999999999999999999999999753

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.13  E-value=0.0037  Score=58.66  Aligned_cols=35  Identities=26%  Similarity=0.510  Sum_probs=32.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.++
T Consensus       145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  179 (312)
T 4gcm_A          145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDE  179 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccc
Confidence            35899999999999999999999999999999775

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.11  E-value=0.0071  Score=49.89  Aligned_cols=35  Identities=20%  Similarity=0.220  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+.+|+|+|+|-.|...|..|.+.|++|+++|+++
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            45789999999999999999999999999999963

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.11  E-value=0.0031  Score=55.77  Aligned_cols=49  Identities=18%  Similarity=0.168  Sum_probs=33.7

Q ss_pred             ccccccccccccc-CCCCcEEEECCChhHHHHHHHHHHcCCcEEE-EccCC
Q 048009            2 WRRSFTSTTSALK-EKKWDALVIGGGHNGLTAAAYLARAGLSVAV-LERRH   50 (531)
Q Consensus         2 ~~~~~~~~~~~~~-~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v-~E~~~   50 (531)
                      |.++.+....... +.+++|.|||+|..|.+.|..|++.|++|++ ++++.
T Consensus         7 ~~~~~~~~~~~~~~m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A            7 HSSGVDLGTENLYFQSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             ----------CTTGGGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             ccccccccccchhhhcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            4555666555544 5568999999999999999999999999998 88753

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.05  E-value=0.0069  Score=49.14  Aligned_cols=34  Identities=24%  Similarity=0.456  Sum_probs=31.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +.+|+|+|+|-.|...|..|.++|++|+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4589999999999999999999999999999964

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.00  E-value=0.005  Score=61.28  Aligned_cols=36  Identities=33%  Similarity=0.483  Sum_probs=33.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+|+|||||..|+.+|..|++.|.+|+|+|+.+.+
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  206 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI  206 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcc
Confidence            368999999999999999999999999999998764

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=95.93  E-value=0.0059  Score=60.85  Aligned_cols=37  Identities=35%  Similarity=0.406  Sum_probs=33.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG   53 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~G   53 (531)
                      ..+|+|||||..|+.+|..|++.|.+|+|+|+.+++.
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  205 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEIL  205 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccc
Confidence            3689999999999999999999999999999987653

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.90  E-value=0.0076  Score=56.77  Aligned_cols=38  Identities=24%  Similarity=0.257  Sum_probs=33.5

Q ss_pred             ccCCCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           13 LKEKKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        13 ~~~~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      |.....+|+|||||..|.+.|..|++.|+ +|+++|.+.
T Consensus         5 ~~~~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A            5 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            44345799999999999999999999998 999999975

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=95.87  E-value=0.0065  Score=60.39  Aligned_cols=36  Identities=36%  Similarity=0.442  Sum_probs=33.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+|+|||||.+|+.+|..|++.|.+|+|+|+.+.+
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~  202 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRI  202 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcc
Confidence            368999999999999999999999999999998764

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.86  E-value=0.0061  Score=56.68  Aligned_cols=34  Identities=26%  Similarity=0.409  Sum_probs=31.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .-+|+|||||..|..-|..++.+|++|+|+|.++
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4689999999999999999999999999999864

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.80  E-value=0.0075  Score=46.99  Aligned_cols=34  Identities=32%  Similarity=0.565  Sum_probs=31.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcC-CcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAG-LSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G-~~V~v~E~~~   50 (531)
                      ..+|+|+|+|..|...+..|.++| ++|++++++.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            368999999999999999999999 9999999864

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=95.79  E-value=0.021  Score=59.78  Aligned_cols=48  Identities=10%  Similarity=0.082  Sum_probs=36.2

Q ss_pred             HHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC--cEEEcCeEEecCChHh
Q 048009          243 IGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG--AQVHSSIVLSNATPYK  295 (531)
Q Consensus       243 l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g--~~~~ad~VV~aa~~~~  295 (531)
                      +.+.+++.|++++++++|++|..   +.+. ++ .+|  +++.+|.||+++|...
T Consensus       579 ~~~~l~~~GV~v~~~~~v~~i~~---~~v~-~~-~~G~~~~i~~D~Vi~a~G~~p  628 (671)
T 1ps9_A          579 HRTTLLSRGVKMIPGVSYQKIDD---DGLH-VV-INGETQVLAVDNVVICAGQEP  628 (671)
T ss_dssp             HHHHHHHTTCEEECSCEEEEEET---TEEE-EE-ETTEEEEECCSEEEECCCEEE
T ss_pred             HHHHHHhcCCEEEeCcEEEEEeC---CeEE-Ee-cCCeEEEEeCCEEEECCCccc
Confidence            45667889999999999999973   2222 33 577  5789999999988654

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=95.59  E-value=0.0098  Score=58.97  Aligned_cols=36  Identities=17%  Similarity=0.199  Sum_probs=33.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  202 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP  202 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCch
Confidence            468999999999999999999999999999998764

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=95.56  E-value=0.01  Score=55.64  Aligned_cols=35  Identities=31%  Similarity=0.518  Sum_probs=32.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+.
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            46899999999999999999999999999998643

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.53  E-value=0.013  Score=54.07  Aligned_cols=34  Identities=24%  Similarity=0.217  Sum_probs=31.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|||+|..|...|..|++.|++|+++++++
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3589999999999999999999999999999864

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.48  E-value=0.013  Score=58.08  Aligned_cols=34  Identities=32%  Similarity=0.394  Sum_probs=32.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|.|||.|.+|+++|..|+++|++|+++|++.
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            4789999999999999999999999999999965

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.39  E-value=0.018  Score=49.12  Aligned_cols=34  Identities=26%  Similarity=0.250  Sum_probs=31.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHc-CCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARA-GLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~-G~~V~v~E~~~   50 (531)
                      ..+|+|||+|..|...|..|.+. |++|+++|+++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            46899999999999999999999 99999999975

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.38  E-value=0.015  Score=54.09  Aligned_cols=37  Identities=32%  Similarity=0.442  Sum_probs=33.5

Q ss_pred             ccCCCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccC
Q 048009           13 LKEKKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERR   49 (531)
Q Consensus        13 ~~~~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~   49 (531)
                      |.+...+|+|||+|..|.+.|+.|++.|+ +|+++|.+
T Consensus         4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            4 MTIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            44556789999999999999999999999 99999996

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.38  E-value=0.013  Score=58.37  Aligned_cols=36  Identities=25%  Similarity=0.330  Sum_probs=33.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~  201 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRL  201 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcc
Confidence            368999999999999999999999999999998764

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=95.31  E-value=0.016  Score=54.44  Aligned_cols=35  Identities=29%  Similarity=0.387  Sum_probs=32.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..++|.|||.|..|...|..|++.|++|+++++++
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            35789999999999999999999999999999874

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.27  E-value=0.012  Score=58.15  Aligned_cols=38  Identities=24%  Similarity=0.467  Sum_probs=34.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG   54 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG   54 (531)
                      ..+|.|||.|.+|+++|..|+++|++|+++|.+...-|
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~   42 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG   42 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTT
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcch
Confidence            35799999999999999999999999999999876543

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.26  E-value=0.017  Score=46.83  Aligned_cols=33  Identities=27%  Similarity=0.251  Sum_probs=30.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+|+|+|+|..|...|..|.+.|++|++++++.
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999999864

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.19  E-value=0.015  Score=51.23  Aligned_cols=33  Identities=15%  Similarity=0.333  Sum_probs=31.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|+|||+|..|...|..|.++|++|+++|+++
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999865

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.18  E-value=0.019  Score=54.27  Aligned_cols=33  Identities=33%  Similarity=0.348  Sum_probs=31.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      .++|+|||+|..|.+.|..|++.|++|++++++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            478999999999999999999999999999984

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=95.14  E-value=0.018  Score=51.69  Aligned_cols=36  Identities=31%  Similarity=0.302  Sum_probs=32.0

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ....+|.|||+|..|.+.|..|++.|++|+++++++
T Consensus        17 ~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           17 FQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            346889999999999999999999999999999864

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=95.14  E-value=0.019  Score=57.61  Aligned_cols=37  Identities=30%  Similarity=0.383  Sum_probs=34.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG   53 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~G   53 (531)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+++.
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l  210 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVA  210 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc
Confidence            4689999999999999999999999999999998764

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.13  E-value=0.017  Score=57.37  Aligned_cols=35  Identities=31%  Similarity=0.447  Sum_probs=32.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..++|.|||+|..|+..|..|++.|++|++++++.
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            35899999999999999999999999999999864

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=95.13  E-value=0.017  Score=57.73  Aligned_cols=38  Identities=29%  Similarity=0.406  Sum_probs=34.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG   54 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG   54 (531)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+++..
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  215 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGG  215 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSC
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCC
Confidence            36899999999999999999999999999999887543

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.11  E-value=0.022  Score=55.71  Aligned_cols=36  Identities=25%  Similarity=0.373  Sum_probs=33.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ...+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            346899999999999999999999999999999764

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.10  E-value=0.019  Score=53.92  Aligned_cols=33  Identities=39%  Similarity=0.535  Sum_probs=31.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|+|||+|..|.+.|..|++.|++|+++.|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            689999999999999999999999999999975

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.08  E-value=0.022  Score=49.66  Aligned_cols=35  Identities=17%  Similarity=0.261  Sum_probs=32.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|.|||+|..|.+.|..|++.|++|+++++++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46899999999999999999999999999999765

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.08  E-value=0.018  Score=53.97  Aligned_cols=34  Identities=18%  Similarity=0.316  Sum_probs=31.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +++|.|||+|..|.+.|..|++.|++|+++++++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            3689999999999999999999999999999864

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.07  E-value=0.02  Score=53.60  Aligned_cols=33  Identities=36%  Similarity=0.507  Sum_probs=30.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|+|||+|..|.+.|..|++.|++|+++.|+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            689999999999999999999999999999975

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.07  E-value=0.021  Score=56.35  Aligned_cols=36  Identities=28%  Similarity=0.254  Sum_probs=33.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHc-CC-cEEEEccCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARA-GL-SVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~-G~-~V~v~E~~~~   51 (531)
                      ..++|+|||+|..|+..|..|+++ |+ +|++++++..
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            457899999999999999999999 99 9999999875

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.03  E-value=0.02  Score=52.67  Aligned_cols=34  Identities=24%  Similarity=0.294  Sum_probs=31.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+.+|.|||+|..|..-|..|+ +|++|+++|+++
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            4689999999999999999999 999999999975

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.98  E-value=0.022  Score=53.18  Aligned_cols=36  Identities=22%  Similarity=0.283  Sum_probs=32.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      .+++|.|||.|..|...|..|++.|++|+++++++.
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            357899999999999999999999999999999753

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=94.95  E-value=0.023  Score=52.46  Aligned_cols=34  Identities=24%  Similarity=0.166  Sum_probs=31.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ++|.|||+|..|.+.|..|++.|++|++++++..
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            3699999999999999999999999999999763

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=94.94  E-value=0.022  Score=52.98  Aligned_cols=35  Identities=29%  Similarity=0.309  Sum_probs=31.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...+|.|||.|..|.+.|..|++.|++|+++++++
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            34789999999999999999999999999999874

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=94.89  E-value=0.015  Score=54.55  Aligned_cols=36  Identities=31%  Similarity=0.345  Sum_probs=30.6

Q ss_pred             ccCCCCcEEEECCChhHHHHHHHHHHc-----C-CcEEEEcc
Q 048009           13 LKEKKWDALVIGGGHNGLTAAAYLARA-----G-LSVAVLER   48 (531)
Q Consensus        13 ~~~~~~dvvIIGaGiaGL~aA~~L~~~-----G-~~V~v~E~   48 (531)
                      |...+++|.|||+|..|.+.|..|++.     | ++|+++++
T Consensus         4 m~~~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            4 MNQQPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            443346899999999999999999999     9 99999987

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=94.87  E-value=0.029  Score=52.57  Aligned_cols=35  Identities=23%  Similarity=0.237  Sum_probs=32.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...+|.|||+|..|...|..|++.|++|++++++.
T Consensus        29 ~~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           29 TDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            34789999999999999999999999999999864

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.86  E-value=0.025  Score=55.45  Aligned_cols=36  Identities=22%  Similarity=0.321  Sum_probs=33.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      .+.+++|||.|..|+..|..|+++|++|+++++++.
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            358999999999999999999999999999999865

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=94.84  E-value=0.023  Score=56.83  Aligned_cols=36  Identities=19%  Similarity=0.320  Sum_probs=33.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+++|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  220 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETV  220 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcc
Confidence            468999999999999999999999999999998764

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=94.82  E-value=0.027  Score=55.87  Aligned_cols=34  Identities=26%  Similarity=0.259  Sum_probs=31.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|.|||+|..|...|..|+++|++|+++|++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4689999999999999999999999999999875

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=94.81  E-value=0.034  Score=43.81  Aligned_cols=51  Identities=8%  Similarity=0.014  Sum_probs=42.2

Q ss_pred             EEEcCeEEecCChHhHHhhcCCCCCCChHHHHHhhccCCCCCeEEEeeecCCC
Q 048009          281 QVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKL  333 (531)
Q Consensus       281 ~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  333 (531)
                      +++||+||+|..+.. +..+.-.+.+|+.+.++++.+.+ .+..++++.++++
T Consensus         5 ~~~Ad~VIvTvP~~v-L~~I~F~P~LP~~k~~Ai~~l~~-g~~~Kv~l~f~~~   55 (130)
T 2e1m_B            5 TWTGDLAIVTIPFSS-LRFVKVTPPFSYKKRRAVIETHY-DQATKVLLEFSRR   55 (130)
T ss_dssp             EEEESEEEECSCHHH-HTTSEEESCCCHHHHHHHHHCCE-ECEEEEEEEESSC
T ss_pred             EEEcCEEEEcCCHHH-HhcCcCCCCCCHHHHHHHHhCCC-cceeEEEEEECCC
Confidence            589999999887776 56664445699999999999988 7889999999875

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=94.80  E-value=0.025  Score=53.76  Aligned_cols=36  Identities=19%  Similarity=0.200  Sum_probs=32.1

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +..++|.|||.|..|...|..|++.|++|+++++++
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            345799999999999999999999999999999864

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.78  E-value=0.029  Score=53.75  Aligned_cols=36  Identities=31%  Similarity=0.380  Sum_probs=32.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ...+|+|||+|..|+.+|..|...|.+|+++|+++.
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            357899999999999999999999999999999764

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.72  E-value=0.023  Score=57.19  Aligned_cols=37  Identities=16%  Similarity=0.233  Sum_probs=33.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG   53 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~G   53 (531)
                      ..+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l  212 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL  212 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccC
Confidence            4689999999999999999999999999999987643

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=94.71  E-value=0.026  Score=52.37  Aligned_cols=35  Identities=23%  Similarity=0.148  Sum_probs=32.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|.|||.|..|...|..|++.|++|+++++++.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46899999999999999999999999999999864

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=94.69  E-value=0.028  Score=52.78  Aligned_cols=34  Identities=26%  Similarity=0.296  Sum_probs=31.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      .++|+|||+|..|.+.|..|++.|+  +|++++++.
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999999999  999999964

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.63  E-value=0.028  Score=53.71  Aligned_cols=34  Identities=35%  Similarity=0.366  Sum_probs=31.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .++|+|||+|..|...|..|++.|++|+++++++
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4689999999999999999999999999999863

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=94.59  E-value=0.028  Score=55.38  Aligned_cols=33  Identities=30%  Similarity=0.459  Sum_probs=31.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|.|||+|..|+..|..|+++|++|+++++++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            689999999999999999999999999999974

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.56  E-value=0.035  Score=52.19  Aligned_cols=35  Identities=23%  Similarity=0.185  Sum_probs=31.2

Q ss_pred             CCcEEEECCChhHHH-HHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLT-AAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~-aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|.|||.|-+|++ +|..|.++|++|++.|++..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            467999999999997 78889999999999999764

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=94.56  E-value=0.03  Score=55.76  Aligned_cols=36  Identities=33%  Similarity=0.350  Sum_probs=33.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  211 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLF  211 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCcc
Confidence            468999999999999999999999999999998764

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=94.52  E-value=0.03  Score=55.78  Aligned_cols=37  Identities=35%  Similarity=0.409  Sum_probs=33.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG   53 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~G   53 (531)
                      ..+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  210 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCA  210 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccc
Confidence            4689999999999999999999999999999987643

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=94.52  E-value=0.026  Score=52.30  Aligned_cols=33  Identities=24%  Similarity=0.277  Sum_probs=31.2

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|+|||+|..|.+.|..|++.|++|+++.|+.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            689999999999999999999999999999974

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.47  E-value=0.031  Score=55.30  Aligned_cols=35  Identities=31%  Similarity=0.320  Sum_probs=32.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...+|.|||+|..|...|..|+++|++|+++|+++
T Consensus        36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            34679999999999999999999999999999864

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=94.47  E-value=0.033  Score=51.40  Aligned_cols=34  Identities=32%  Similarity=0.295  Sum_probs=31.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ++|.|||.|..|...|..|++.|++|+++++++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            5799999999999999999999999999999753

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=94.43  E-value=0.035  Score=54.13  Aligned_cols=37  Identities=38%  Similarity=0.406  Sum_probs=33.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG   53 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~G   53 (531)
                      ..+|+|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~  178 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVM  178 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcch
Confidence            4689999999999999999999999999999987653

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.43  E-value=0.032  Score=51.44  Aligned_cols=34  Identities=35%  Similarity=0.336  Sum_probs=31.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      .+|.|||.|..|...|..|++.|++|+++++++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999999753

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=94.42  E-value=0.032  Score=52.95  Aligned_cols=34  Identities=35%  Similarity=0.372  Sum_probs=31.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|||+|..|+.+|..|...|.+|+++++++
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4789999999999999999999999999999975

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=94.40  E-value=0.041  Score=51.40  Aligned_cols=36  Identities=22%  Similarity=0.218  Sum_probs=32.4

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      |...+|+|||+|..|.+.|..|+..|+ +|+++|.+.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            446799999999999999999999999 999999965

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=94.38  E-value=0.055  Score=52.78  Aligned_cols=52  Identities=12%  Similarity=0.149  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChH
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPY  294 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~  294 (531)
                      ..+.+.+.+.+++.|++++++++|++|..+      +|+++||+++.+|.||+++|..
T Consensus       218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~------~v~~~~g~~~~~D~vi~a~G~~  269 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKLVHNFKIKEIREH------EIVDEKGNTIPADITILLPPYT  269 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEECSS------EEEETTSCEEECSEEEEECCEE
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECCC------eEEECCCCEEeeeEEEECCCCC
Confidence            578888899999999999999999998642      2778999999999999987743

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=94.35  E-value=0.034  Score=54.38  Aligned_cols=37  Identities=43%  Similarity=0.557  Sum_probs=34.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG   53 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~G   53 (531)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+-
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l  188 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVL  188 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchh
Confidence            5689999999999999999999999999999988753

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=94.32  E-value=0.036  Score=55.09  Aligned_cols=35  Identities=11%  Similarity=0.088  Sum_probs=32.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||+|.+|+-.|..|++.|.+|+|+++++.
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~  231 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA  231 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence            46899999999999999999999999999998765

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=94.31  E-value=0.038  Score=52.23  Aligned_cols=34  Identities=29%  Similarity=0.410  Sum_probs=31.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .++|.|||+|..|.+.|..|++.|++|++++++.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4899999999999999999999999999999863

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=94.28  E-value=0.035  Score=53.92  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=31.3

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +..++|+|||+|..|+..|..|++ |++|+++++++
T Consensus        34 ~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           34 SEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            345789999999999999999998 99999999975

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=94.26  E-value=0.056  Score=50.28  Aligned_cols=34  Identities=35%  Similarity=0.471  Sum_probs=31.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|.|||.|..|...|..|++.|++|+++++++
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5789999999999999999999999999999864

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.22  E-value=0.035  Score=51.86  Aligned_cols=35  Identities=23%  Similarity=0.219  Sum_probs=31.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      ..++|.|||.|..|.+.|..|++.|+ +|++++++.
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            45789999999999999999999999 999999963

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=94.22  E-value=0.047  Score=47.85  Aligned_cols=35  Identities=23%  Similarity=0.269  Sum_probs=31.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...+|.|||+|..|.+.|..|++.|++|++++++.
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34689999999999999999999999999999864

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=94.21  E-value=0.042  Score=51.45  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=31.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      ..+|+|||+|..|.+.|..|+++|+ +|+++|++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            3689999999999999999999998 999999975

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=94.19  E-value=0.018  Score=50.70  Aligned_cols=34  Identities=21%  Similarity=0.256  Sum_probs=31.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      ..++|.|||+|..|-+-|..|+++|++|+++++.
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            4578999999999999999999999999999985

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=94.17  E-value=0.035  Score=55.67  Aligned_cols=36  Identities=36%  Similarity=0.484  Sum_probs=33.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  233 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTI  233 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccc
Confidence            468999999999999999999999999999998753

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=94.17  E-value=0.048  Score=51.21  Aligned_cols=33  Identities=27%  Similarity=0.345  Sum_probs=31.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      .+|+|||||..|.+.|..|++.|+ +|+++|.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            689999999999999999999998 999999975

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.15  E-value=0.019  Score=56.75  Aligned_cols=36  Identities=17%  Similarity=0.329  Sum_probs=33.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      +.++|+|+|+|-.|...|..|.+.|++|+|+|+++.
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~   37 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDGD   37 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHH
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            468899999999999999999999999999999753

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.14  E-value=0.038  Score=54.33  Aligned_cols=33  Identities=21%  Similarity=0.232  Sum_probs=30.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|+|||+|..|+..|..|++.|++|+++++++
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            379999999999999999999999999999864

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=94.14  E-value=0.036  Score=52.39  Aligned_cols=36  Identities=36%  Similarity=0.600  Sum_probs=32.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+|+|||+|..|+-.|..|++.|.+|+|+++++.+
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~  190 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEF  190 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcC
Confidence            478999999999999999999999999999997653

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=94.13  E-value=0.041  Score=54.99  Aligned_cols=36  Identities=17%  Similarity=0.322  Sum_probs=33.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+|+|||||..|+-.|..|++.|.+|+|+++.+++
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  222 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV  222 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcc
Confidence            368999999999999999999999999999998764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.09  E-value=0.054  Score=47.34  Aligned_cols=34  Identities=24%  Similarity=0.375  Sum_probs=31.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      ...+|+|||||-.|...|..|.+.|.+|+|++..
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            4578999999999999999999999999999875

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=94.07  E-value=0.045  Score=50.82  Aligned_cols=33  Identities=30%  Similarity=0.383  Sum_probs=30.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      ++|+|||+|..|.+.|..|+.+|+  +|+++|.+.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            379999999999999999999998  999999864

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.06  E-value=0.052  Score=52.77  Aligned_cols=36  Identities=22%  Similarity=0.144  Sum_probs=33.1

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +.+.+|.|||.|-.||..|..|+++|++|+.+|-+.
T Consensus        19 ~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           19 SHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            456789999999999999999999999999999874

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.05  E-value=0.044  Score=51.36  Aligned_cols=34  Identities=29%  Similarity=0.447  Sum_probs=29.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...+|+|||+|..|.+.|..|++.|++|+++ +++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            3478999999999999999999999999999 653

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.03  E-value=0.042  Score=51.97  Aligned_cols=35  Identities=31%  Similarity=0.475  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      .+.+|+|+|||.+|+.+|..|...|. +|+++|++.
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            46899999999999999999999998 899999973

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=93.98  E-value=0.057  Score=50.51  Aligned_cols=34  Identities=21%  Similarity=0.345  Sum_probs=31.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      ..+|+|||+|..|.+.|..|+..|+ +|.++|.+.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            4689999999999999999999998 999999864

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=93.87  E-value=0.042  Score=55.10  Aligned_cols=36  Identities=25%  Similarity=0.357  Sum_probs=33.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHc---CCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARA---GLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~---G~~V~v~E~~~~~   52 (531)
                      ..+++|||||..|+-.|..|++.   |.+|+|+|+.+++
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~  229 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLI  229 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcc
Confidence            36899999999999999999999   9999999998764

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=93.87  E-value=0.06  Score=53.20  Aligned_cols=35  Identities=20%  Similarity=0.228  Sum_probs=32.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+.+|.|||.|..|.+.|..|+++|++|+++++++
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35789999999999999999999999999999975

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=93.86  E-value=0.048  Score=54.02  Aligned_cols=36  Identities=28%  Similarity=0.407  Sum_probs=33.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+++|||+|..|+-+|..|++.|.+|+|+|+.+++
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  182 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENL  182 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcc
Confidence            467999999999999999999999999999998764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=93.84  E-value=0.047  Score=54.02  Aligned_cols=36  Identities=14%  Similarity=-0.011  Sum_probs=33.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCc-EEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLS-VAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~-V~v~E~~~~~   52 (531)
                      ..+|+|||+|.+|+-.|..|++.|.+ |+|+++++.+
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD  248 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred             CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence            46899999999999999999999999 9999998765

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=93.82  E-value=0.059  Score=50.33  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=31.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      ...+|+|||+|-.|.+.|+.|+..|+  +|.++|.+.
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            35799999999999999999999987  899999864

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=93.82  E-value=0.032  Score=53.49  Aligned_cols=32  Identities=28%  Similarity=0.350  Sum_probs=30.4

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +|.|||+|..|.+.|..|++.|++|+++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            89999999999999999999999999999864

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=93.74  E-value=0.055  Score=50.39  Aligned_cols=32  Identities=41%  Similarity=0.575  Sum_probs=30.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|+|||+|..|.+.|..|+ .|++|+++.|++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            68999999999999999999 999999999864

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=93.74  E-value=0.046  Score=51.63  Aligned_cols=31  Identities=19%  Similarity=0.252  Sum_probs=29.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEcc
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLER   48 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~   48 (531)
                      ++|.|||+|..|.+.|..|++.|++|+++++
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            3699999999999999999999999999998

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=93.73  E-value=0.04  Score=49.89  Aligned_cols=35  Identities=31%  Similarity=0.432  Sum_probs=32.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...+|+|||||-.|+..|..|.+.|.+|+|++...
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            45789999999999999999999999999998754

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=93.70  E-value=0.047  Score=54.67  Aligned_cols=36  Identities=28%  Similarity=0.325  Sum_probs=33.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHc---CCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARA---GLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~---G~~V~v~E~~~~~   52 (531)
                      ..+++|||||..|+-.|..|++.   |.+|+|+|+.+++
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~  225 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI  225 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCc
Confidence            36899999999999999999999   9999999998764

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=93.68  E-value=0.11  Score=52.91  Aligned_cols=37  Identities=35%  Similarity=0.563  Sum_probs=34.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      .++|++|||||.+|+++|.+|++.|++|+|+|+....
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            5699999999999999999999999999999998754

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=93.67  E-value=0.065  Score=48.55  Aligned_cols=35  Identities=17%  Similarity=0.075  Sum_probs=32.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcC----CcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAG----LSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G----~~V~v~E~~~~   51 (531)
                      .++|.|||+|..|.+-|..|++.|    ++|++++++..
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            468999999999999999999999    79999999765

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.67  E-value=0.058  Score=53.69  Aligned_cols=34  Identities=21%  Similarity=0.334  Sum_probs=31.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHc--CCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARA--GLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~   50 (531)
                      .++|.|||.|..|+..|..|+++  |++|++++++.
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            46899999999999999999998  79999999863

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=93.65  E-value=0.058  Score=54.51  Aligned_cols=36  Identities=17%  Similarity=0.375  Sum_probs=33.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG   53 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~G   53 (531)
                      .+++|||||..|+-.|..|++.|.+|+|+|+.+.+.
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l  250 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK  250 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccc
Confidence            789999999999999999999999999999987653

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.64  E-value=0.056  Score=51.10  Aligned_cols=34  Identities=24%  Similarity=0.468  Sum_probs=31.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERR   49 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~   49 (531)
                      ...+|+|+|||.+|..+|..|...|. +|+|+|++
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            46899999999999999999999997 79999996

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=93.63  E-value=0.062  Score=50.07  Aligned_cols=33  Identities=30%  Similarity=0.365  Sum_probs=30.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHc--CCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARA--GLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~   50 (531)
                      ++|+|||+|..|.+.|..|++.  |++|+++|++.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3799999999999999999995  79999999975

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=93.62  E-value=0.063  Score=50.16  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=31.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      ...+|+|||+|..|.+.|..|+..|+  +|+++|.+.
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            45789999999999999999999987  899999853

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=93.55  E-value=0.077  Score=49.51  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=31.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      ...+|+|||+|..|.+.|..|+..|+ +|.++|.+.
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            35789999999999999999999988 999999975

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=93.55  E-value=0.067  Score=53.73  Aligned_cols=37  Identities=19%  Similarity=0.286  Sum_probs=34.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG   53 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~G   53 (531)
                      ..+++|||+|..|+-.|..|++.|.+|+|+|+.+.+.
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l  218 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVL  218 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence            4689999999999999999999999999999988654

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=93.49  E-value=0.06  Score=53.72  Aligned_cols=36  Identities=36%  Similarity=0.368  Sum_probs=33.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+|+|||+|..|+-.|..|++.|.+|+|+|+.+++
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  215 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF  215 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence            468999999999999999999999999999998764

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=93.48  E-value=0.071  Score=50.02  Aligned_cols=36  Identities=17%  Similarity=0.151  Sum_probs=31.6

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcC----CcEEEEccCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAG----LSVAVLERRH   50 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G----~~V~v~E~~~   50 (531)
                      +..++|.|||+|..|.+-|..|++.|    ++|++++++.
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            34578999999999999999999999    8999999865

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=93.47  E-value=0.088  Score=48.20  Aligned_cols=35  Identities=23%  Similarity=0.313  Sum_probs=32.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCC---cEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGL---SVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~---~V~v~E~~~   50 (531)
                      ...+|.|||+|..|.+.|..|++.|+   +|+++++++
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            35789999999999999999999999   899999975

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=93.45  E-value=0.047  Score=51.08  Aligned_cols=34  Identities=21%  Similarity=0.150  Sum_probs=31.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcC-CcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAG-LSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G-~~V~v~E~~~   50 (531)
                      .++|.|||.|..|.+.|..|++.| ++|++++++.
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            368999999999999999999999 9999999975

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=93.39  E-value=0.088  Score=53.18  Aligned_cols=35  Identities=29%  Similarity=0.393  Sum_probs=31.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+++|||||..|+-.|..+++.|.+|+|+++...
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~  257 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIV  257 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCS
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCeEEEeccccc
Confidence            46899999999999999999999999999998543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=93.39  E-value=0.029  Score=45.58  Aligned_cols=34  Identities=24%  Similarity=0.297  Sum_probs=31.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|||+|..|...|..|++.|++|+|++++.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            5789999999999999999999999999999863

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=93.34  E-value=0.089  Score=48.40  Aligned_cols=33  Identities=15%  Similarity=0.239  Sum_probs=31.0

Q ss_pred             CcEEEECC-ChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGG-GHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|.|||+ |..|.+.|..|++.|++|++++++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            58999999 9999999999999999999999864

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=93.29  E-value=0.054  Score=52.55  Aligned_cols=32  Identities=22%  Similarity=0.270  Sum_probs=29.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|.|||+|..|+..|..|++ |++|++++++.
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            379999999999999999999 99999999864

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=93.20  E-value=0.082  Score=52.25  Aligned_cols=35  Identities=31%  Similarity=0.460  Sum_probs=31.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~~   51 (531)
                      ..+|+|||||..|+-+|..|.+.|. +|+|+++++.
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR  299 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence            4689999999999999999999997 5999999764

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=93.19  E-value=0.083  Score=51.30  Aligned_cols=36  Identities=19%  Similarity=0.317  Sum_probs=32.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ...+|+|||.|-.|...|..|.+.|++|+|+|+++.
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            346899999999999999999999999999999854

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=93.18  E-value=0.073  Score=46.42  Aligned_cols=31  Identities=32%  Similarity=0.397  Sum_probs=29.3

Q ss_pred             cEEEEC-CChhHHHHHHHHHHcCCcEEEEccC
Q 048009           19 DALVIG-GGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        19 dvvIIG-aGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      +|+||| +|..|...|..|+++|++|++++++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~   33 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            699999 9999999999999999999999885

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=93.15  E-value=0.079  Score=51.23  Aligned_cols=34  Identities=29%  Similarity=0.401  Sum_probs=31.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|||+|..|+.+|..|...|.+|++++++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4689999999999999999999999999999875

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=93.13  E-value=0.047  Score=52.08  Aligned_cols=35  Identities=14%  Similarity=0.149  Sum_probs=32.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcC-------CcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAG-------LSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G-------~~V~v~E~~~~   51 (531)
                      .++|+|||+|..|.+.|..|++.|       ++|+++++++.
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            468999999999999999999999       99999999765

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=93.12  E-value=0.072  Score=49.85  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=30.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      ++|+|||+|..|.+.|..|++.|+  +|+++|++.
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            379999999999999999999999  999999863

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=93.09  E-value=0.09  Score=52.61  Aligned_cols=34  Identities=29%  Similarity=0.432  Sum_probs=31.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+++|||||..|+-.|..|++.|.+|+|+++..
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  218 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI  218 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc
Confidence            3579999999999999999999999999999864

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=93.09  E-value=0.079  Score=52.62  Aligned_cols=36  Identities=22%  Similarity=0.274  Sum_probs=32.0

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +.+.+|.|||+|..|.+.|..|+++|++|+++++++
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            345789999999999999999999999999999874

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=93.06  E-value=0.085  Score=55.28  Aligned_cols=34  Identities=26%  Similarity=0.271  Sum_probs=31.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|.|||+|..|...|..|+++|++|+++|+++
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            4579999999999999999999999999999975

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=93.06  E-value=0.068  Score=49.41  Aligned_cols=34  Identities=26%  Similarity=0.306  Sum_probs=28.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      .+|.+||-|..|..-|..|.++||+|+++++++.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998764

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=93.02  E-value=0.096  Score=48.42  Aligned_cols=33  Identities=21%  Similarity=0.226  Sum_probs=30.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|.|||+|..|.+.|..|++.|++|++++++.
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            369999999999999999999999999999864

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=93.01  E-value=0.079  Score=48.03  Aligned_cols=33  Identities=21%  Similarity=0.420  Sum_probs=30.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHcC-CcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAG-LSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G-~~V~v~E~~~   50 (531)
                      ++|.|||+|..|.+.|..|++.| ++|+++++++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            36999999999999999999999 9999999863

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=92.99  E-value=0.097  Score=52.15  Aligned_cols=34  Identities=24%  Similarity=0.203  Sum_probs=32.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|.|||.|..|.+.|..|+++|++|+++++++
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4789999999999999999999999999999875

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=92.98  E-value=0.11  Score=48.86  Aligned_cols=34  Identities=24%  Similarity=0.137  Sum_probs=31.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|.|||.|..|-+.|..|++.|++|+++++++
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4679999999999999999999999999999875

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=92.98  E-value=0.11  Score=48.52  Aligned_cols=34  Identities=24%  Similarity=0.320  Sum_probs=31.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      ..+|.|||.|..|.+.|..|++.|+  +|+++++++
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            3689999999999999999999999  999999975

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=92.97  E-value=0.081  Score=49.30  Aligned_cols=33  Identities=21%  Similarity=0.229  Sum_probs=30.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHcC--CcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAG--LSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G--~~V~v~E~~~   50 (531)
                      ++|+|||+|..|.+.|..|+++|  ++|++++++.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            57999999999999999999999  7999999964

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=92.91  E-value=0.1  Score=48.58  Aligned_cols=33  Identities=30%  Similarity=0.432  Sum_probs=30.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      .+|+|||+|..|.+.|..|+..|+ +|.++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            589999999999999999999997 999999864

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=92.85  E-value=0.094  Score=48.01  Aligned_cols=33  Identities=27%  Similarity=0.285  Sum_probs=30.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|.|||+|..|.+.|..|++.|++|+++++++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            369999999999999999999999999999864

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=92.83  E-value=0.1  Score=50.23  Aligned_cols=36  Identities=33%  Similarity=0.337  Sum_probs=32.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ...+|+|||+|..|+.+|..|...|.+|+++++++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            357899999999999999999999999999998753

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=92.80  E-value=0.083  Score=52.62  Aligned_cols=36  Identities=36%  Similarity=0.538  Sum_probs=33.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHc-CCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARA-GLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~-G~~V~v~E~~~~~   52 (531)
                      ..+|+|||+|..|+-+|..|++. |.+|+++|+.+.+
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~  195 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQI  195 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcc
Confidence            46899999999999999999999 9999999998754

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=92.77  E-value=0.089  Score=48.36  Aligned_cols=33  Identities=18%  Similarity=0.116  Sum_probs=30.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      ++|+|||+|..|.+.|..|++.|+  +|+++|.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            479999999999999999999998  899999864

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=92.74  E-value=0.088  Score=52.20  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=31.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHc--CCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARA--GLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~   50 (531)
                      .++|.|||.|..|+..|..|++.  |++|++++++.
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            36899999999999999999999  89999999864

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=92.69  E-value=0.11  Score=51.70  Aligned_cols=33  Identities=21%  Similarity=0.231  Sum_probs=31.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|.|||+|..|...|..|+++|++|++++++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            589999999999999999999999999999864

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=92.69  E-value=0.084  Score=50.75  Aligned_cols=34  Identities=12%  Similarity=0.171  Sum_probs=31.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHcC-------CcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAG-------LSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G-------~~V~v~E~~~~   51 (531)
                      .+|.|||+|..|.+.|..|++.|       ++|++++++..
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            57999999999999999999999       99999999765

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=92.61  E-value=0.12  Score=47.07  Aligned_cols=34  Identities=21%  Similarity=0.207  Sum_probs=31.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...|+|+|+|-.|.++|..|++.|.+|+|+.|+.
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4679999999999999999999999999998863

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=92.60  E-value=0.11  Score=48.17  Aligned_cols=34  Identities=24%  Similarity=0.252  Sum_probs=31.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|.|||+|..|...|..|++.|++|+++++++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4689999999999999999999999999999864

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=92.58  E-value=0.11  Score=48.02  Aligned_cols=33  Identities=27%  Similarity=0.529  Sum_probs=30.9

Q ss_pred             CcEEEEC-CChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIG-GGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIG-aGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+|.||| +|..|.+.|..|++.|++|+++++++
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            5799999 99999999999999999999999865

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=92.57  E-value=0.13  Score=46.43  Aligned_cols=35  Identities=34%  Similarity=0.505  Sum_probs=32.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||+|-+|.++|+.|++.|.+|+|+.|+..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999999754

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=92.51  E-value=0.1  Score=48.17  Aligned_cols=35  Identities=20%  Similarity=0.398  Sum_probs=30.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC--cEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL--SVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~~   51 (531)
                      ..+|+|||||..|...|+.|+.+|+  +|.|+|.+..
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~   50 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG   50 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            4789999999999999999999998  9999999763

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=92.50  E-value=0.17  Score=50.61  Aligned_cols=49  Identities=12%  Similarity=0.058  Sum_probs=41.6

Q ss_pred             HHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          245 SAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       245 ~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +.++++|++|+++++|++|..+  +++.+|++.+|+++.+|.||+++|...
T Consensus       265 ~~l~~~GV~v~~~~~v~~i~~~--~~v~~v~~~~g~~i~aD~Vv~a~G~~p  313 (493)
T 1y56_A          265 QELERWGIDYVHIPNVKRVEGN--EKVERVIDMNNHEYKVDALIFADGRRP  313 (493)
T ss_dssp             HHHHHHTCEEEECSSEEEEECS--SSCCEEEETTCCEEECSEEEECCCEEE
T ss_pred             HHHHhCCcEEEeCCeeEEEecC--CceEEEEeCCCeEEEeCEEEECCCcCc
Confidence            6678899999999999999854  445668888998899999999998664

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=92.48  E-value=0.13  Score=51.15  Aligned_cols=34  Identities=24%  Similarity=0.257  Sum_probs=31.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +.+|.|||+|..|...|..|+++|++|++++++.
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            4689999999999999999999999999999864

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=92.48  E-value=0.11  Score=47.85  Aligned_cols=32  Identities=31%  Similarity=0.324  Sum_probs=29.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|.|||+|..|...|..|++ |++|++++++.
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            479999999999999999999 99999999864

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=92.48  E-value=0.14  Score=47.03  Aligned_cols=35  Identities=31%  Similarity=0.330  Sum_probs=32.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      +++|+|+|+|..|...+..|.++|++|+++.|+..
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            46899999999999999999999999999998753

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=92.47  E-value=0.098  Score=47.27  Aligned_cols=34  Identities=12%  Similarity=0.038  Sum_probs=31.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +++|.|||+|..|...|..|.+.|++|.++++++
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            4689999999999999999999999999999863

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=92.47  E-value=0.12  Score=51.36  Aligned_cols=33  Identities=36%  Similarity=0.438  Sum_probs=30.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|.|||+|..|...|..|+++|++|++++++.
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999864

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=92.47  E-value=0.1  Score=47.41  Aligned_cols=34  Identities=29%  Similarity=0.389  Sum_probs=31.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCc-EEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLS-VAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~-V~v~E~~~   50 (531)
                      .++|.|||+|..|...|..|++.|++ |.+++++.
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            36899999999999999999999999 99999864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=92.43  E-value=0.1  Score=49.76  Aligned_cols=33  Identities=24%  Similarity=0.390  Sum_probs=30.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+|+|+|+|.+|+.++..|+..|.+|+++++++
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            689999999999999999999999999999864

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=92.42  E-value=0.1  Score=50.68  Aligned_cols=33  Identities=24%  Similarity=0.346  Sum_probs=31.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      -+..|||.|..|+..|..|+++|++|+++++++
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~   44 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ   44 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            578999999999999999999999999999975

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=92.41  E-value=0.1  Score=49.63  Aligned_cols=40  Identities=28%  Similarity=0.489  Sum_probs=34.8

Q ss_pred             CCCcEEEECC-ChhHHHHHHHHHHcCC---cEEEEccCC-CCCce
Q 048009           16 KKWDALVIGG-GHNGLTAAAYLARAGL---SVAVLERRH-VIGGA   55 (531)
Q Consensus        16 ~~~dvvIIGa-GiaGL~aA~~L~~~G~---~V~v~E~~~-~~GG~   55 (531)
                      ...+|+|||| |.+|+.|+..+...|.   +|+++|.+. .-||+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~  257 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGP  257 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCc
Confidence            4689999999 9999999999999997   999999976 34553

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=92.35  E-value=0.086  Score=48.71  Aligned_cols=33  Identities=33%  Similarity=0.241  Sum_probs=29.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +++|.|||+|..|...|..|++.|++|++++ +.
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            3689999999999999999999999999998 54

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=92.34  E-value=0.11  Score=47.97  Aligned_cols=33  Identities=30%  Similarity=0.339  Sum_probs=30.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|.|||+|..|...|..|++.|++|.+++++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            589999999999999999999999999999864

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=92.30  E-value=0.12  Score=48.07  Aligned_cols=33  Identities=30%  Similarity=0.500  Sum_probs=30.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      ++|+|||+|..|.+.|+.|++.|+  +|.++|.+.
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            479999999999999999999987  899999975

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=92.30  E-value=0.11  Score=54.31  Aligned_cols=35  Identities=23%  Similarity=0.188  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...+|.|||+|..|...|..|+++|++|+++|+++
T Consensus       313 ~i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          313 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             cCCEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            34679999999999999999999999999999975

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=92.29  E-value=0.16  Score=47.73  Aligned_cols=35  Identities=14%  Similarity=0.114  Sum_probs=31.2

Q ss_pred             CCCCcEEEECC-ChhHHHHHHHHHHcC--CcEEEEccC
Q 048009           15 EKKWDALVIGG-GHNGLTAAAYLARAG--LSVAVLERR   49 (531)
Q Consensus        15 ~~~~dvvIIGa-GiaGL~aA~~L~~~G--~~V~v~E~~   49 (531)
                      +...+|+|||+ |..|.++|+.|+.+|  .+|+++|..
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~   43 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF   43 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            45689999998 999999999999998  489999985

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=92.27  E-value=0.12  Score=51.31  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=33.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+++|||+|..|+-.|..|++.|.+|+++|+.+.+
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~  205 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEI  205 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            468999999999999999999999999999998754

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=92.25  E-value=0.04  Score=50.25  Aligned_cols=38  Identities=34%  Similarity=0.564  Sum_probs=30.9

Q ss_pred             CCCCCCeeecCCCCCCCCCcCCc--hHHHHHHHHHHHhhhh
Q 048009          491 RTPLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVLQDLKKS  529 (531)
Q Consensus       491 ~t~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~~~~~~~  529 (531)
                      .+..+++|+|||++. |+|+..|  ||+.||+.|++.|+.+
T Consensus       291 ~~~~~~v~l~GDa~~-g~gv~~A~~sG~~aA~~I~~~L~~e  330 (336)
T 3kkj_A          291 SDADLGIYVCGDWCL-SGRVEGAWLSGQEAARRLLEHLQLE  330 (336)
T ss_dssp             EETTTTEEECCGGGT-TSSHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             eeCCCCEEEEecccC-CcCHHHHHHHHHHHHHHHHHHhhcc
Confidence            345689999999985 5678776  9999999999988653

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=92.23  E-value=0.12  Score=51.62  Aligned_cols=36  Identities=25%  Similarity=0.464  Sum_probs=33.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+++|||+|..|+-.|..|++.|.+|+++|+.+.+
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  226 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLI  226 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence            468999999999999999999999999999998764

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=92.20  E-value=0.14  Score=46.97  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=30.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      .+|.|||+|..|.+.|..|++.|+  +|+++++++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            479999999999999999999998  899999864

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=92.19  E-value=0.16  Score=47.24  Aligned_cols=35  Identities=20%  Similarity=0.211  Sum_probs=31.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      +..+|+|||+|..|.+.|+.|+.+|+  +|.++|.+.
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            45789999999999999999999997  899999853

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=92.13  E-value=0.16  Score=45.52  Aligned_cols=33  Identities=12%  Similarity=0.179  Sum_probs=30.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC----cEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL----SVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~----~V~v~E~~~   50 (531)
                      .+|.|||+|..|.+.|..|.+.|+    +|+++++++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            589999999999999999999998    999999864

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=92.11  E-value=0.16  Score=47.41  Aligned_cols=35  Identities=20%  Similarity=0.262  Sum_probs=31.7

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCC--cEEEEccC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGL--SVAVLERR   49 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~   49 (531)
                      ....+|+|||+|..|.+.|+.|+.+|+  +|.|+|.+
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            456899999999999999999999987  89999985

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=91.97  E-value=0.14  Score=51.14  Aligned_cols=33  Identities=33%  Similarity=0.511  Sum_probs=30.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      ..+++|||+|..|+-.|..|++.|.+|+|+++.
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  219 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS  219 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            357999999999999999999999999999985

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=91.88  E-value=0.15  Score=48.80  Aligned_cols=34  Identities=24%  Similarity=0.427  Sum_probs=31.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      .+|+|||||..|..+|+.+.+.|++|+++|.++.
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            5799999999999999999999999999998764

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=91.87  E-value=0.14  Score=45.96  Aligned_cols=34  Identities=32%  Similarity=0.524  Sum_probs=31.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      ..+|+|||+|-.|..+|..|++.|. +|+|+|+..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            4789999999999999999999997 799999964

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=91.84  E-value=0.15  Score=48.77  Aligned_cols=34  Identities=29%  Similarity=0.496  Sum_probs=31.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...|+|||+|..|+.+|..|+..|.+|+++++++
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4789999999999999999999999999999864

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=91.75  E-value=0.16  Score=47.46  Aligned_cols=35  Identities=20%  Similarity=0.297  Sum_probs=31.0

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCC--cEEEEccC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGL--SVAVLERR   49 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~   49 (531)
                      +...+|+|||+|-.|.+.|..|+.+|.  +|.++|.+
T Consensus         4 m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            4 FKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            345799999999999999999999884  89999975

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=91.64  E-value=0.12  Score=51.08  Aligned_cols=46  Identities=22%  Similarity=0.273  Sum_probs=35.6

Q ss_pred             cCcEEEcCcceeEEEecCCC-ceeEEEeC---------------CC--cEEEcCeEEecCChHh
Q 048009          250 AGAHIVTRAEVSQLMINDSG-RVNGVQLA---------------DG--AQVHSSIVLSNATPYK  295 (531)
Q Consensus       250 ~G~~i~~~~~V~~I~~~~~g-~~~~V~~~---------------~g--~~~~ad~VV~aa~~~~  295 (531)
                      +|++|++++.+.+|..++++ ++.+|++.               +|  +++.+|.||+++|...
T Consensus       270 ~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p  333 (460)
T 1cjc_A          270 RAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKS  333 (460)
T ss_dssp             EEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEEC
T ss_pred             ceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCC
Confidence            78999999999999865324 66666654               34  4789999999998665

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=91.63  E-value=0.12  Score=47.00  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=31.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|||+|-+|.++|..|++.|.+|+|+.|+.
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4679999999999999999999999999999863

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=91.59  E-value=0.16  Score=44.96  Aligned_cols=35  Identities=20%  Similarity=0.262  Sum_probs=31.5

Q ss_pred             CCCcEEEECC-ChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGG-GHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..++|+|.|| |..|...+..|+++|++|+++.|+.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            4578999998 9999999999999999999999864

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=91.56  E-value=0.14  Score=46.36  Aligned_cols=30  Identities=27%  Similarity=0.200  Sum_probs=28.3

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEcc
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLER   48 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~   48 (531)
                      +|.|||+|..|.+.|..|++.|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            699999999999999999999999999866

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=91.50  E-value=0.098  Score=50.87  Aligned_cols=30  Identities=33%  Similarity=0.458  Sum_probs=28.3

Q ss_pred             CcEEEECCChhHHHHHHHHHH-cCCcEEEEc
Q 048009           18 WDALVIGGGHNGLTAAAYLAR-AGLSVAVLE   47 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~-~G~~V~v~E   47 (531)
                      ++|+|||+|..|.+.|..|++ .|++|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            589999999999999999998 499999999

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=91.48  E-value=0.18  Score=46.58  Aligned_cols=34  Identities=29%  Similarity=0.355  Sum_probs=31.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +.+|.+||-|..|..-|..|.++||+|+++++++
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~   36 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   36 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            4589999999999999999999999999999864

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=91.47  E-value=0.17  Score=46.65  Aligned_cols=34  Identities=21%  Similarity=0.172  Sum_probs=31.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      ..+|+|||+|-+|.++|..|++.|. +|+|+.|+.
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            4679999999999999999999997 899999863

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=91.47  E-value=0.16  Score=46.70  Aligned_cols=34  Identities=18%  Similarity=0.173  Sum_probs=30.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHc--CCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARA--GLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~   50 (531)
                      ..+|.|||+|..|.+.|..|++.  |++|+++++++
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            46899999999999999999998  68999999863

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=91.45  E-value=0.21  Score=47.13  Aligned_cols=34  Identities=29%  Similarity=0.337  Sum_probs=31.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|.|||+|..|.+.|..|++.|++|+++++++
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            4689999999999999999999999999999875

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=91.44  E-value=0.16  Score=46.32  Aligned_cols=34  Identities=24%  Similarity=0.333  Sum_probs=31.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|||+|..|.+.|..|.+.|.+|++++++.
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3679999999999999999999999999999874

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=91.32  E-value=0.19  Score=46.86  Aligned_cols=34  Identities=15%  Similarity=0.340  Sum_probs=30.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCC--cEEEEccC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGL--SVAVLERR   49 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~   49 (531)
                      ...+|+|||+|..|.+.|+.|+..|+  ++.++|.+
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            45789999999999999999999987  89999985

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=91.32  E-value=0.19  Score=43.85  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=30.0

Q ss_pred             CcEEEECC-ChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGG-GHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|+|+|| |..|...+..|.++|++|+++.|+.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            36999996 9999999999999999999999864

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=91.27  E-value=0.19  Score=46.77  Aligned_cols=34  Identities=21%  Similarity=0.389  Sum_probs=30.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      ..+|+|||+|..|.+.|+.|+..|.  +|.++|.+.
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            4689999999999999999998875  799999863

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=91.21  E-value=0.21  Score=44.79  Aligned_cols=32  Identities=22%  Similarity=0.355  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      +++|||+|-+|-+++..|.+.|. +|+|+.|+.
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~  142 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI  142 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            89999999999999999999998 899999864

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=91.15  E-value=0.2  Score=48.07  Aligned_cols=34  Identities=35%  Similarity=0.462  Sum_probs=31.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...|+|||+|..|+.+|..|+..|.+|++++++.
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4689999999999999999999999999999864

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=91.04  E-value=0.15  Score=48.77  Aligned_cols=41  Identities=17%  Similarity=0.272  Sum_probs=28.6

Q ss_pred             cccccccCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009            8 STTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus         8 ~~~~~~~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      .....|+.++++|+|||||..|-.+|..|++. ++|+|.+++
T Consensus         7 ~~~~~~~g~~mkilvlGaG~vG~~~~~~L~~~-~~v~~~~~~   47 (365)
T 3abi_A            7 HHHHHIEGRHMKVLILGAGNIGRAIAWDLKDE-FDVYIGDVN   47 (365)
T ss_dssp             ---------CCEEEEECCSHHHHHHHHHHTTT-SEEEEEESC
T ss_pred             cccccccCCccEEEEECCCHHHHHHHHHHhcC-CCeEEEEcC
Confidence            44555666788999999999999999999864 889998775

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=90.93  E-value=0.24  Score=42.64  Aligned_cols=33  Identities=36%  Similarity=0.516  Sum_probs=30.6

Q ss_pred             CcEEEECC-ChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGG-GHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|+|+|| |..|...+..|.++|++|+++.|+.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            57999999 9999999999999999999999864

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=90.92  E-value=0.26  Score=51.46  Aligned_cols=35  Identities=31%  Similarity=0.320  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +-.+|.|||||..|-..|+.++..|++|+|+|.++
T Consensus       315 ~i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~  349 (742)
T 3zwc_A          315 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDP  349 (742)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             cccEEEEEcccHHHHHHHHHHHhCCCchhcccchH
Confidence            34689999999999999999999999999999864

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=90.85  E-value=0.25  Score=45.61  Aligned_cols=34  Identities=29%  Similarity=0.412  Sum_probs=31.1

Q ss_pred             CcEEEECC-ChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGG-GHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ++|+|.|| |..|-..+.+|.++||+|+++-|++.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            57999999 99999999999999999999988654

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=90.81  E-value=0.22  Score=46.00  Aligned_cols=33  Identities=27%  Similarity=0.268  Sum_probs=29.8

Q ss_pred             CCcEEEECCC-hhHHHHHHHHHHcCCcEEEEccC
Q 048009           17 KWDALVIGGG-HNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        17 ~~dvvIIGaG-iaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      ..+|+|||+| +.|..+|..|...|.+|+|++++
T Consensus       177 gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            4789999999 67999999999999999999775

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=90.78  E-value=0.23  Score=45.90  Aligned_cols=34  Identities=32%  Similarity=0.371  Sum_probs=31.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|.|||+|..|..+|..|...|.+|++++++.
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4689999999999999999999999999999864

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=90.74  E-value=0.25  Score=44.71  Aligned_cols=32  Identities=44%  Similarity=0.529  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +|+|||+|-.|.+.|..|.+.|.+|++++++.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            89999999999999999999999999999864

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=90.57  E-value=0.24  Score=43.36  Aligned_cols=33  Identities=27%  Similarity=0.350  Sum_probs=29.9

Q ss_pred             CcEEEECC-ChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGG-GHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|+|+|| |..|...+..|.++|++|.++.|+.
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            36999998 9999999999999999999998853

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=90.54  E-value=0.19  Score=45.61  Aligned_cols=34  Identities=21%  Similarity=0.192  Sum_probs=31.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      ..+|+|||+|-+|.++|..|++.|. +|+|+.|+.
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            4689999999999999999999998 899999874

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=90.44  E-value=0.15  Score=49.49  Aligned_cols=34  Identities=35%  Similarity=0.638  Sum_probs=30.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHcC--CcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAG--LSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G--~~V~v~E~~~~   51 (531)
                      .+|||||||.+|++||.+|++.+  .+|+|+|+++.
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            58999999999999999999876  58999999875

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=90.37  E-value=0.27  Score=45.32  Aligned_cols=34  Identities=29%  Similarity=0.349  Sum_probs=31.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...|.|||+|..|..+|..|...|.+|++++++.
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4689999999999999999999999999999864

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=90.26  E-value=0.21  Score=49.81  Aligned_cols=36  Identities=19%  Similarity=0.233  Sum_probs=31.3

Q ss_pred             CCCcEEEECCChhHHH-HHHHHHHcCCcEEEEccCCC
Q 048009           16 KKWDALVIGGGHNGLT-AAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~-aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ...+|.|||.|-+|++ +|..|.++|++|++.|....
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~   57 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN   57 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC
Confidence            3468999999999997 69999999999999998643

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.23  E-value=0.11  Score=46.02  Aligned_cols=34  Identities=15%  Similarity=0.193  Sum_probs=30.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||+|-.|...|..|.+.|+ |+++|+++.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            4679999999999999999999999 999999753

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=90.12  E-value=0.23  Score=46.15  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=30.1

Q ss_pred             CcEEEECC-ChhHHHHHHHHHHcC--CcEEEEccCC
Q 048009           18 WDALVIGG-GHNGLTAAAYLARAG--LSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGa-GiaGL~aA~~L~~~G--~~V~v~E~~~   50 (531)
                      ++|+|||| |..|.+.|..|++.|  .+|.++|...
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            47999998 999999999999988  7899999875

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=90.06  E-value=0.24  Score=45.38  Aligned_cols=33  Identities=21%  Similarity=0.175  Sum_probs=30.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|+|+|||..|...+..|.++|++|+++.|++
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            689999999999999999999999999998864

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=90.05  E-value=0.2  Score=47.35  Aligned_cols=33  Identities=18%  Similarity=0.358  Sum_probs=30.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|||+|..|+-+|..|++.| +|++++++.
T Consensus       163 ~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          163 GMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            468999999999999999999998 699999874

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=89.99  E-value=0.23  Score=48.90  Aligned_cols=34  Identities=29%  Similarity=0.416  Sum_probs=31.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|||+|-.|...|..|.+.|.+|+|++...
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            5789999999999999999999999999999853

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=89.92  E-value=0.29  Score=45.36  Aligned_cols=32  Identities=22%  Similarity=0.444  Sum_probs=29.3

Q ss_pred             cEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      +|+|||+|..|.+.|+.|+..|+ +|.++|.+.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            58999999999999999999888 699999864

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=89.33  E-value=0.061  Score=46.46  Aligned_cols=36  Identities=22%  Similarity=0.243  Sum_probs=32.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..++|.|||+|..|.+.|..|.+.|++|++++++..
T Consensus        18 ~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~   53 (201)
T 2yjz_A           18 KQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ   53 (201)
Confidence            346899999999999999999999999999988653

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=89.75  E-value=0.32  Score=45.46  Aligned_cols=35  Identities=14%  Similarity=0.341  Sum_probs=31.0

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCC--cEEEEccC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGL--SVAVLERR   49 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~   49 (531)
                      .++.+|+|||+|-.|.+.|+.|+..++  ++.++|.+
T Consensus         7 ~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~   43 (326)
T 2zqz_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            345899999999999999999999885  79999985

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=89.64  E-value=0.34  Score=44.09  Aligned_cols=34  Identities=21%  Similarity=0.259  Sum_probs=31.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      ..+|+|||+|-+|-++|+.|++.|. +|+|+.|+.
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            4689999999999999999999998 899998864

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=89.56  E-value=0.37  Score=43.62  Aligned_cols=34  Identities=21%  Similarity=0.265  Sum_probs=30.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      ..+++|||+|-+|.++|..|++.|. +|+|+.|+.
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            4689999999999999999999995 899998863

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=89.49  E-value=0.26  Score=45.20  Aligned_cols=32  Identities=19%  Similarity=0.321  Sum_probs=29.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      ...|+|+|+|-.|.++|..|++.| +|+|+.|+
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~  159 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRT  159 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence            357999999999999999999999 99999885

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=89.38  E-value=0.32  Score=47.65  Aligned_cols=34  Identities=38%  Similarity=0.300  Sum_probs=31.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...|+|+|+|-.|.++|..|+..|.+|+++|+++
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4679999999999999999999999999999853

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=89.31  E-value=0.4  Score=43.72  Aligned_cols=34  Identities=21%  Similarity=0.241  Sum_probs=30.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      ..+|+|+|+|-+|.++|..|++.|. +|+|+.|+.
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            4689999999999999999999998 699998863

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=89.19  E-value=0.26  Score=46.18  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=30.2

Q ss_pred             CCCcEEEECC-ChhHHHHHHHHHHcCC-------cEEEEccC
Q 048009           16 KKWDALVIGG-GHNGLTAAAYLARAGL-------SVAVLERR   49 (531)
Q Consensus        16 ~~~dvvIIGa-GiaGL~aA~~L~~~G~-------~V~v~E~~   49 (531)
                      +.++|+|||| |..|.+.+..|..+|+       +|.++|..
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence            3478999998 9999999999999885       79999886

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=89.17  E-value=0.43  Score=44.83  Aligned_cols=35  Identities=17%  Similarity=0.111  Sum_probs=32.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|.|||.|..|...|..|+..|++|++++++..
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  184 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK  184 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            46799999999999999999999999999998753

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=89.11  E-value=0.29  Score=51.20  Aligned_cols=36  Identities=19%  Similarity=0.175  Sum_probs=32.7

Q ss_pred             CcEEEEC--CChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009           18 WDALVIG--GGHNGLTAAAYLARAGLSVAVLERRHVIG   53 (531)
Q Consensus        18 ~dvvIIG--aGiaGL~aA~~L~~~G~~V~v~E~~~~~G   53 (531)
                      .+|+|||  +|..|+-+|..|++.|.+|+++++.+.+.
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~  561 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVS  561 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccc
Confidence            5699999  99999999999999999999999987643

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=89.10  E-value=0.39  Score=44.46  Aligned_cols=33  Identities=15%  Similarity=0.303  Sum_probs=30.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERR   49 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~   49 (531)
                      ..+++|+|+|-+|.++|..|++.|. +|+|+.|+
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            4689999999999999999999998 89999886

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=89.08  E-value=0.39  Score=45.44  Aligned_cols=33  Identities=18%  Similarity=0.154  Sum_probs=30.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      ...|+|+|+|-.|..+|..|.+.|.+|++.|++
T Consensus       173 GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~  205 (364)
T 1leh_A          173 GLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN  205 (364)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCEEEEECchHHHHHHHHHHHHCCCEEEEEcCC
Confidence            467999999999999999999999999999975

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=88.96  E-value=0.4  Score=45.33  Aligned_cols=34  Identities=26%  Similarity=0.224  Sum_probs=31.1

Q ss_pred             CCcEEEECC-ChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGG-GHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|+|| |..|...+..|.++|++|.++.|+.
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            568999999 9999999999999999999999975

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=88.94  E-value=0.37  Score=43.87  Aligned_cols=34  Identities=24%  Similarity=0.210  Sum_probs=30.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      ..+++|||+|-+|.+.|..|++.|. +|+|+.|+.
T Consensus       126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            4689999999999999999999996 899998864

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=88.91  E-value=0.42  Score=43.30  Aligned_cols=33  Identities=18%  Similarity=0.329  Sum_probs=30.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERR   49 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~   49 (531)
                      ..+|+|||+|-+|-++|+.|++.|. +|+|+.|+
T Consensus       119 ~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A          119 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4689999999999999999999996 79999886

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=88.91  E-value=0.36  Score=44.96  Aligned_cols=33  Identities=18%  Similarity=0.376  Sum_probs=30.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC--cEEEEccC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL--SVAVLERR   49 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~   49 (531)
                      +.+|+|||+|-.|.+.|+.|+..++  ++.++|.+
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            4799999999999999999999886  79999985

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=88.89  E-value=0.29  Score=45.82  Aligned_cols=35  Identities=11%  Similarity=0.206  Sum_probs=30.8

Q ss_pred             CCcEEEEC-CChhHHHHHHHHHHcC--CcEEEEccCCC
Q 048009           17 KWDALVIG-GGHNGLTAAAYLARAG--LSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIG-aGiaGL~aA~~L~~~G--~~V~v~E~~~~   51 (531)
                      .++|+||| +|..|.+.|..|+++|  .+|.++|....
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~   45 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA   45 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence            46899999 7999999999999998  78999997553

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=88.82  E-value=0.28  Score=48.40  Aligned_cols=44  Identities=9%  Similarity=0.078  Sum_probs=33.7

Q ss_pred             cCcEEEcCcceeEEEecCCCceeEEEeC----------------CC--cEEEcCeEEecCChHh
Q 048009          250 AGAHIVTRAEVSQLMINDSGRVNGVQLA----------------DG--AQVHSSIVLSNATPYK  295 (531)
Q Consensus       250 ~G~~i~~~~~V~~I~~~~~g~~~~V~~~----------------~g--~~~~ad~VV~aa~~~~  295 (531)
                      +|++|++++.+++|..+  +++.+|++.                +|  +++.||.||+++|...
T Consensus       265 ~gv~i~~~~~~~~i~~~--~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p  326 (456)
T 1lqt_A          265 RRMVFRFLTSPIEIKGK--RKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRG  326 (456)
T ss_dssp             EEEEEECSEEEEEEECS--SSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEEC
T ss_pred             ceEEEEeCCCCeEEecC--CcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEcccccc
Confidence            78999999999999754  455556554                34  3689999999988654

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=88.75  E-value=0.45  Score=43.26  Aligned_cols=33  Identities=24%  Similarity=0.328  Sum_probs=29.6

Q ss_pred             CCcEEEECC-ChhHHHHHHHHHHcCCcEEEEccC
Q 048009           17 KWDALVIGG-GHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        17 ~~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      ..+|+|||. |+.|..+|..|.+.|..|+|+.++
T Consensus       165 Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~  198 (300)
T 4a26_A          165 GKRAVVLGRSNIVGAPVAALLMKENATVTIVHSG  198 (300)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            478999995 568999999999999999999874

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=88.75  E-value=0.43  Score=44.75  Aligned_cols=36  Identities=19%  Similarity=0.276  Sum_probs=31.9

Q ss_pred             CCCCcEEEECC-ChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           15 EKKWDALVIGG-GHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        15 ~~~~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...+.|+|.|| |..|...+..|+++|++|+++.++.
T Consensus        18 ~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           18 GSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             TTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            34578999998 9999999999999999999999854

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=88.75  E-value=0.34  Score=47.57  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=30.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|+|+|..|.+.|..|++.|++|++++++.
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~   36 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   36 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCH
Confidence            4679999999999999999999999999999863

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=88.70  E-value=0.32  Score=46.78  Aligned_cols=34  Identities=29%  Similarity=0.204  Sum_probs=31.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...|+|||.|..|..+|..|+..|.+|+++|+++
T Consensus       220 GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          220 GKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4689999999999999999999999999999864

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=88.64  E-value=0.52  Score=42.87  Aligned_cols=33  Identities=18%  Similarity=0.211  Sum_probs=30.0

Q ss_pred             CCcEEEECCC-hhHHHHHHHHHHcCCcEEEEccC
Q 048009           17 KWDALVIGGG-HNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        17 ~~dvvIIGaG-iaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      ..+|+|||+| +.|..+|..|...|..|+|+.+.
T Consensus       165 gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  198 (301)
T 1a4i_A          165 GRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK  198 (301)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC
Confidence            5789999999 68999999999999999999754

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=88.51  E-value=0.46  Score=42.62  Aligned_cols=33  Identities=12%  Similarity=0.158  Sum_probs=29.8

Q ss_pred             CCcEEEECCC-hhHHHHHHHHHHcCCcEEEEccC
Q 048009           17 KWDALVIGGG-HNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        17 ~~dvvIIGaG-iaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      ..+|+|||+| +.|..+|..|.+.|..|+++.+.
T Consensus       150 Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~  183 (276)
T 3ngx_A          150 ENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK  183 (276)
T ss_dssp             SCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4789999976 79999999999999999999864

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=88.47  E-value=0.29  Score=48.97  Aligned_cols=35  Identities=26%  Similarity=0.493  Sum_probs=30.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHc--------------CCcEEEEccCCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARA--------------GLSVAVLERRHVI   52 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~--------------G~~V~v~E~~~~~   52 (531)
                      ..++|||||..|+-.|..|++.              ..+|+|+|+.+++
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~i  266 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIV  266 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSS
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccccc
Confidence            4699999999999999998864              2679999998875

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=88.42  E-value=0.49  Score=43.99  Aligned_cols=35  Identities=37%  Similarity=0.470  Sum_probs=32.2

Q ss_pred             CCcEEEECC-ChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGG-GHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      +.+|+|.|| |..|...+..|.++|++|+++.|+..
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            478999999 99999999999999999999998764

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=88.39  E-value=0.39  Score=47.43  Aligned_cols=34  Identities=26%  Similarity=0.260  Sum_probs=31.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...|+|||.|..|..+|..|+..|.+|+++|+++
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999864

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=88.34  E-value=0.56  Score=45.91  Aligned_cols=56  Identities=13%  Similarity=0.154  Sum_probs=41.2

Q ss_pred             chHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC--cEEEcCeEEecCChH
Q 048009          235 GMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG--AQVHSSIVLSNATPY  294 (531)
Q Consensus       235 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g--~~~~ad~VV~aa~~~  294 (531)
                      +.....+.+.+.++++|++++++++|++|+.   +++. +...+|  +++.+|.||+++|..
T Consensus       198 ~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~---~~~~-~~~~~g~~~~i~~d~vi~~~G~~  255 (430)
T 3hyw_A          198 GIGASKRLVEDLFAERNIDWIANVAVKAIEP---DKVI-YEDLNGNTHEVPAKFTMFMPSFQ  255 (430)
T ss_dssp             CSTTHHHHHHHHHHHTTCEEECSCEEEEECS---SEEE-EECTTSCEEEEECSEEEEECEEE
T ss_pred             hhHHHHHHHHHHHHhCCeEEEeCceEEEEeC---CceE-EEeeCCCceEeecceEEEeccCC
Confidence            3445667778888999999999999999853   3332 444444  478999999987743

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=88.27  E-value=0.44  Score=44.64  Aligned_cols=34  Identities=24%  Similarity=0.234  Sum_probs=31.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|.|||.|..|...|..|+..|++|++++++.
T Consensus       155 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  188 (330)
T 2gcg_A          155 QSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ  188 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            4689999999999999999999999999999864

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=88.24  E-value=0.35  Score=42.41  Aligned_cols=34  Identities=21%  Similarity=0.271  Sum_probs=31.0

Q ss_pred             CCcEEEECC-ChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGG-GHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +++|+|+|| |..|...+..|.++|++|.++.|+.
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~   38 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP   38 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence            368999996 9999999999999999999999974

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=88.23  E-value=0.46  Score=44.81  Aligned_cols=37  Identities=27%  Similarity=0.294  Sum_probs=31.0

Q ss_pred             CCCCcEEEECC-ChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           15 EKKWDALVIGG-GHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        15 ~~~~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ....+|+|.|| |..|...+..|.++|++|+++.++..
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   54 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS   54 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            34578999999 99999999999999999999998764

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=88.17  E-value=0.58  Score=40.81  Aligned_cols=32  Identities=16%  Similarity=0.227  Sum_probs=28.8

Q ss_pred             cEEEECC-ChhHHHHHHHHH-HcCCcEEEEccCC
Q 048009           19 DALVIGG-GHNGLTAAAYLA-RAGLSVAVLERRH   50 (531)
Q Consensus        19 dvvIIGa-GiaGL~aA~~L~-~~G~~V~v~E~~~   50 (531)
                      .|+|+|| |-.|...|..|+ ++|++|+++.|+.
T Consensus         7 ~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~   40 (221)
T 3r6d_A            7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQL   40 (221)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCc
Confidence            3999996 899999999999 8999999999864

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=87.97  E-value=0.58  Score=43.79  Aligned_cols=35  Identities=20%  Similarity=0.192  Sum_probs=32.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|.|||.|..|...|..|+..|++|++++++..
T Consensus       164 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~  198 (333)
T 3ba1_A          164 GKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKK  198 (333)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCch
Confidence            46799999999999999999999999999998754

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=87.87  E-value=0.26  Score=47.07  Aligned_cols=38  Identities=32%  Similarity=0.316  Sum_probs=31.7

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCC--------cEEEEccCCCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGL--------SVAVLERRHVI   52 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~--------~V~v~E~~~~~   52 (531)
                      .+..+|+|||||.=|-+.|..|++.|+        +|+++-+++.+
T Consensus        32 ~~p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~   77 (391)
T 4fgw_A           32 EKPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEI   77 (391)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHh
Confidence            345799999999999999999999875        49999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	531
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	3e-27
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	3e-23
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	2e-18
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	3e-17
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	4e-15
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	5e-14
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	7e-13
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	5e-11
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	1e-10
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	1e-10
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	1e-09
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	2e-09
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	4e-09
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	5e-09
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	5e-09
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	6e-09
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	6e-09
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	6e-09
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	1e-08
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	1e-08
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	1e-08
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	1e-08
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	1e-08
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	2e-08
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	2e-08
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	2e-08
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	2e-08
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	3e-08
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	5e-08
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	5e-08
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	6e-08
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	1e-07
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	1e-07
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	2e-07
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	3e-07
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	3e-07
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	6e-07
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	8e-07
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	2e-06
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	2e-06
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	2e-06
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	3e-06
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	4e-06
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	5e-06
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	6e-06
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	8e-06
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	1e-05
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	1e-05
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	2e-05
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	3e-05
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	3e-05
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	3e-05
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	3e-05
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	8e-05
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	8e-05
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	9e-05
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	2e-04
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	0.001
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	0.003

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  109 bits (272), Expect = 3e-27
 Identities = 32/290 (11%), Positives = 88/290 (30%), Gaps = 13/290 (4%)

Query: 15  EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQ 74
           +  +D +V+G G      +  L+  G  V  ++++   GG A +  L   ++  + + + 
Sbjct: 3   DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPIS 62

Query: 75  SLLRPSLIKCGTRIG-ETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGS 133
              R S          +   + + A   +   +    + ++  F  +       +     
Sbjct: 63  KEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYK 122

Query: 134 SSYSHQFKNKIRNSAFWAHCLRRAISLGQKDL-------VEFVDLLLSPASKVLNKWFET 186
              +            +     +                 + +DL  +   +V  K+   
Sbjct: 123 VPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLG 182

Query: 187 DVLKATLATDAVIGTMSSVHTPGSGY---VLLHHVMGETDGNPGIWSYVEGGMGSVSMAI 243
           +  K  +     + T        +      +L +           + Y   G+G +    
Sbjct: 183 NSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQGF 242

Query: 244 GSAAREAGAHIVTRAEVSQLMI-NDSGRVNGVQLADGAQVHSSIVLSNAT 292
              +   G   +    + +++   D+G+  GV         + +V+++ T
Sbjct: 243 ARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGV-KTKLGTFKAPLVIADPT 291

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 98.4 bits (243), Expect = 3e-23
 Identities = 30/317 (9%), Positives = 86/317 (27%), Gaps = 13/317 (4%)

Query: 15  EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQ 74
           ++++D +V+G G      +  ++  G  V  ++R    GG + +   +            
Sbjct: 4   DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEG 63

Query: 75  SLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSS 134
                   +           +   + + +    E       + V+  F     ++ +  S
Sbjct: 64  PPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPS 123

Query: 135 SYSHQFKNK-----IRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVL 189
           + +    +       +                     E VD   +    V  K+     +
Sbjct: 124 TETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDV 183

Query: 190 KATLATDAVIGTMSSVHTPGSGYV---LLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSA 246
                    +                 +  +           + Y   G+G +       
Sbjct: 184 IDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARL 243

Query: 247 AREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNAT--PYKTFMDL-VPG 303
           +   G   +    V  +++ +  +V GV  ++G       ++ + +  P +  +D     
Sbjct: 244 SAIYGGTYMLNKPVDDIIMENG-KVVGV-KSEGEVARCKQLICDPSYVPDRVPIDDGSES 301

Query: 304 NILPDDFILSIKHSDYS 320
            +       +  H + +
Sbjct: 302 QVFCSCSYDATTHFETT 318

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.2 bits (209), Expect = 2e-18
 Identities = 60/361 (16%), Positives = 115/361 (31%), Gaps = 17/361 (4%)

Query: 19  DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLR 78
           D +V+GGG +G+ AA  L  +GL+V VLE R  +GG   T                   +
Sbjct: 1   DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQ 60

Query: 79  PSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSH 138
             +++    +G    +V E + +I +            F  +    +  +      +   
Sbjct: 61  NRILRLAKELGLETYKVNEVERLIHHVKG-KSYPFRGPFPPVWNPITYLDHNNFWRTMDD 119

Query: 139 QFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAV 198
             +    ++ + A       ++  K+L++   L  + ++K L   F    + A     + 
Sbjct: 120 MGREIPSDAPWKAPLAEEWDNMTMKELLD--KLCWTESAKQLATLFVNLCVTAETHEVSA 177

Query: 199 IGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRA 258
           +  +  V   G    ++    G      G      GG G VS  I       G  +    
Sbjct: 178 LWFLWYVKQCGGTTRIISTTNG------GQERKFVGGSGQVSERI---MDLLGDRVKLER 228

Query: 259 EVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSD 318
            V    I+ +     V+  +     +  V+S A P    M +     LP      I    
Sbjct: 229 PVIY--IDQTRENVLVETLNHEMYEAKYVIS-AIPPTLGMKIHFNPPLPMMRNQMITRVF 285

Query: 319 YSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSR 378
                T+    + +         +  +      G +    E+ E        A+  +P  
Sbjct: 286 PPGILTQYGRVLRQPVDRIY--FAGTETATHWSGYMEGAVEAGERAAREILHAMGKIPED 343

Query: 379 R 379
            
Sbjct: 344 E 344

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (200), Expect = 3e-17
 Identities = 68/520 (13%), Positives = 132/520 (25%), Gaps = 83/520 (15%)

Query: 15  EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRC-SYL 73
           +K    ++IG G +GL AA  L   G+ V +LE R  +GG   T      +        +
Sbjct: 3   KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRK-GNYVADLGAMVV 61

Query: 74  QSLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGS 133
             L    +     ++     ++ +        ++E       +  D + +     LL+ +
Sbjct: 62  TGLGGNPMAVVSKQVNMELAKIKQK-----CPLYEANGQAVPKEKDEMVEQEFNRLLEAT 116

Query: 134 SSYSHQFKNKI--RNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKA 191
           S  SHQ    +           L   I L +K + +          K   +    ++L  
Sbjct: 117 SYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEEL--KELLNK 174

Query: 192 TLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAG 251
            +     I  +   +   S       +             V+     ++         A 
Sbjct: 175 MVNLKEKIKELHQQYKEASEVKPPRDITA--------EFLVKSKHRDLTALCKEYDELAE 226

Query: 252 AHIVTRAEVSQLMIN-DSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDF 310
                  ++ +L  N  S      +       H + +        + + L   +   D  
Sbjct: 227 TQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFE 286

Query: 311 ILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQE 370
                 +  +  +       + L       +            I + + S  +      +
Sbjct: 287 FTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCD 346

Query: 371 AVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANR 430
           AV         +      VL +                  + P    W   A        
Sbjct: 347 AV---------LCTLPLGVLKQ------------QPPAVQFVPPLPEWKTSAV------- 378

Query: 431 CFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNY 490
                 +      SS   YD++  P                         + P       
Sbjct: 379 ------QRMVAAGSSGNDYDLMAQP-------------------------ITPGPSIPGA 407

Query: 491 RTPLQGLYMCGSGTHPG--GGVMGA--PGRNAAGIVLQDL 526
             P+  L+  G  T       V GA   G   AG +    
Sbjct: 408 PQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF 447

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 74.8 bits (182), Expect = 4e-15
 Identities = 54/355 (15%), Positives = 103/355 (29%), Gaps = 20/355 (5%)

Query: 19  DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLR 78
           +  V+GGG +GL  A +L   G    +LE    +GGA  T   + G+   +         
Sbjct: 2   NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHA-LAGYLVEQGPNSFLDRE 60

Query: 79  PSLIKCGTRIG-----ETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGS 133
           P+       +         +   + + +               F+          L    
Sbjct: 61  PATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAG 120

Query: 134 SSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATL 193
             +S +    +  S              Q  L      + +   + L+      +L    
Sbjct: 121 ELFSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKME 180

Query: 194 ATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAH 253
                +   +           L    G      G  S  +GG+  +  A+   A   G  
Sbjct: 181 REHRSLILGAIRAQKAQRQAALP--AGTAPKLSGALSTFDGGLQVLIDAL---AASLGDA 235

Query: 254 IVTRAEVSQLMINDSG-RVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDF-- 310
               A V  L   D G R+   +    A++  + V+  A P      L+    L D    
Sbjct: 236 AHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVL-AAPAHATAKLLRP--LDDALAA 292

Query: 311 -ILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEI 364
            +  I +  +      I+ A+ +LP       ++   G      I   ++  + +
Sbjct: 293 LVAGIYNLGHLERVAAIDAALQRLPGLHLIGNAYKGVGL--NDCIRNAAQLADAL 345

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 71.4 bits (173), Expect = 5e-14
 Identities = 46/324 (14%), Positives = 87/324 (26%), Gaps = 27/324 (8%)

Query: 21  LVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKF--------SRCSY 72
            VIG G +GL AA  L   GL+V V E     GG   +     G  +             
Sbjct: 5   AVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS-QDGLIWDEGANTMTESEGD 63

Query: 73  LQSLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQG 132
           +  L+    ++   +   + N+   A++     +  + +D                L   
Sbjct: 64  VTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEPI 123

Query: 133 SSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVE-FVDLLLSPASKVLNKWFETDVLKA 191
                   +    + +      R         L++ FV          L+       L  
Sbjct: 124 LWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWN 183

Query: 192 TLATDA--VIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAARE 249
                   ++G + S  +P +                       GGM +++ AI      
Sbjct: 184 LEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAI--CKDL 241

Query: 250 AGAHIVTRAEVSQLMINDSG---------RVNGVQLADGAQVHSSIVLSNATPYKTFMDL 300
               +   + V +L  + +                     +     V+    P      +
Sbjct: 242 REDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIM-TAPLCDVKSM 300

Query: 301 ---VPGNILPDDFILSIKHSDYSS 321
                GN    +FI  +   +Y S
Sbjct: 301 KIAKRGNPFLLNFIPEVYGHNYDS 324

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 67.9 bits (164), Expect = 7e-13
 Identities = 36/260 (13%), Positives = 73/260 (28%), Gaps = 17/260 (6%)

Query: 21  LVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL-IPGFKFSRCSYLQSLLRP 79
           +++G G  GL+AA  LA AG  V VLE     GG   T      G+  +           
Sbjct: 34  VIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHR 93

Query: 80  SLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQ 139
            + +   +     NE  +      Y I                     E+ +      + 
Sbjct: 94  IVREYIRKFDLRLNEFSQENDNAWYFIKN-------------IRKKVGEVKKDPGLLKYP 140

Query: 140 FKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVI 199
            K      +           + ++        +L+       K +       +     +I
Sbjct: 141 VKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMI 200

Query: 200 GTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAE 259
           G + +  +      +      +       +  +  GM  +  A+    R+    +   A+
Sbjct: 201 GDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAM---YRDIQDKVHFNAQ 257

Query: 260 VSQLMINDSGRVNGVQLADG 279
           V ++  ND       +    
Sbjct: 258 VIKIQQNDQKVTVVYETLSK 277

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.3 bits (145), Expect = 5e-11
 Identities = 22/78 (28%), Positives = 33/78 (42%)

Query: 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQ 74
           K  D ++IGGG  G  AA   A+ G + A +E+R  +GG  +    IP       S+L 
Sbjct: 3  NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLF 62

Query: 75 SLLRPSLIKCGTRIGETW 92
            +     K G  +    
Sbjct: 63 HQMHTEAQKRGIDVNGDI 80

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 61.1 bits (146), Expect = 1e-10
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLS-VAVLERRHVIGGAAVTEELIPGFKF 67
            +V+G G +G++AA  L+ AG++ + +LE    IGG         G   
Sbjct: 2  RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTN-FAGINV 50

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 59.1 bits (142), Expect = 1e-10
 Identities = 19/77 (24%), Positives = 32/77 (41%)

Query: 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQS 75
           + D ++IGGG  G  AA   A+ G     +E+R  +GG  +    IP       S++  
Sbjct: 2  DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYH 61

Query: 76 LLRPSLIKCGTRIGETW 92
            + S    G ++    
Sbjct: 62 EAKHSFANHGVKVSNVE 78

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 56.5 bits (135), Expect = 1e-09
 Identities = 20/65 (30%), Positives = 33/65 (50%)

Query: 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQ 74
          + ++D +V+GGG  G +AA   A  GL VA++ER   +GG  +    IP       + + 
Sbjct: 4  DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVI 63

Query: 75 SLLRP 79
            +R 
Sbjct: 64 DEVRH 68

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 56.2 bits (134), Expect = 2e-09
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
           +D +VIGGG +GL AA   A  G +V +L++ + +G 
Sbjct: 2  HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGR 39

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 56.1 bits (134), Expect = 4e-09
 Identities = 37/315 (11%), Positives = 86/315 (27%), Gaps = 18/315 (5%)

Query: 15  EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSY-L 73
           + K+D +++G G  G T A  L  AG  VA+ +   +  G  +        ++ +     
Sbjct: 2   DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKF 61

Query: 74  QSLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGS 133
            ++++  L+     +     + +   S      F        Q             + G 
Sbjct: 62  VNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGG 121

Query: 134 SSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFE--TDVLKA 191
            S           +       R    L  KD  +  D            +F+  TD  K 
Sbjct: 122 MSTH--------WTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKE 173

Query: 192 TLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAG 251
           ++  + V+  ++  +     +  +             WS         +     A     
Sbjct: 174 SIRHNLVLNKLAEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPE-ER 232

Query: 252 AHIVTRAEVSQLMINDSG-RVNGVQLADGA-----QVHSSIVLSNATPYKTFMDLVPGNI 305
            ++       +++ N     +  + + D       ++ + + +  A        LV    
Sbjct: 233 FNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGF 292

Query: 306 LPDDFILSIKHSDYS 320
                       +  
Sbjct: 293 GQLGRPNPTNPPELL 307

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 53.7 bits (128), Expect = 5e-09
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 3/88 (3%)

Query: 16  KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSR---CSY 72
           K    L++G G  G TAA Y ARA L   ++      G    T E+              
Sbjct: 4   KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPL 63

Query: 73  LQSLLRPSLIKCGTRIGETWNEVVEAKS 100
           L   +     K  T I       V+ ++
Sbjct: 64  LMERMHEHATKFETEIIFDHINKVDLQN 91

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 55.0 bits (131), Expect = 5e-09
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 2/140 (1%)

Query: 16  KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQS 75
           +++DA+ IGGG  G   +AYL   G    +++R   +GG+      +P   FS C+    
Sbjct: 41  REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELM 100

Query: 76  LLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSS 135
           L R    +            ++    +  A                   +   +L   + 
Sbjct: 101 LARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGP--HGIMNFQSKEQLNLEYILNCPAK 158

Query: 136 YSHQFKNKIRNSAFWAHCLR 155
                  +     F A  L 
Sbjct: 159 VIDNHTVEAAGKVFKAKNLI 178

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 55.1 bits (131), Expect = 6e-09
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGA 55
          ++ ++A+VIGGG  G   A YLA+   + A+ E   + G  
Sbjct: 2  KRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRT 42

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 55.2 bits (132), Expect = 6e-09
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKF 67
          D +++G G  G   A  L +    V V+E+R+ IGG A TE+   G + 
Sbjct: 3  DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTED-CEGIQI 50

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 55.4 bits (132), Expect = 6e-09
 Identities = 12/55 (21%), Positives = 25/55 (45%)

Query: 3  RRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57
          +       +A   +    LV+G G  G  A+    +AG +V ++++    GG ++
Sbjct: 5  QDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSM 59

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 54.6 bits (130), Expect = 1e-08
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 7  TSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57
           +  ++      D +V+G G  G +AA     +G  V ++E+  VIGG A 
Sbjct: 6  QAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK 56

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 53.4 bits (127), Expect = 1e-08
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 16  KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQS 75
           K +D + IGGG  G+ +    A  G   A++E + + GG  V    +P       + ++ 
Sbjct: 1   KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKEL-GGTCVNVGCVPKKVMWHAAQIRE 59

Query: 76  LLRPSLIKCGTRIGET---WNEVVEAKSIIV 103
            +       G         W  ++ +++  +
Sbjct: 60  AIHMYGPDYGFDTTINKFNWETLIASRTAYI 90

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 53.5 bits (127), Expect = 1e-08
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAA 56
          +K+D +VIG G  G  AA   A+ GL  A++E+     G  
Sbjct: 2  QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT 42

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 54.2 bits (129), Expect = 1e-08
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 8  STTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57
             +A  ++  D ++IG G  GL AA     AG  V +LE+  + GG   
Sbjct: 14 KAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK 63

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.2 bits (129), Expect = 1e-08
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 19  DALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIGGAAV-TEELIPGFKFSRCSYLQS 75
           D +++G G +GL+AA  +A+    L V ++E     GG +    +L           ++ 
Sbjct: 52  DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAM------VMRK 105

Query: 76  LLRPSLIKCGTRIGETWNEVVEAKSIIVYA 105
                L +      +  + VV   + +  +
Sbjct: 106 PAHLFLQELEIPYEDEGDYVVVKHAALFIS 135

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 53.4 bits (127), Expect = 2e-08
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
          +  + ++IG G  GL  AA LA+ G SV V +    IG 
Sbjct: 3  QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGR 41

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 53.7 bits (128), Expect = 2e-08
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 1  MWRRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLA-RAGLSVAVLERRHVIGG 54
          M RR  T     +   + D +V+G G  GL+AA  ++    + VA++E+    GG
Sbjct: 20 MTRRYMTDM---ITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGG 71

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 53.1 bits (126), Expect = 2e-08
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIP 63
          +D +VIGGG  G+ AA   AR    VA++E+   +GG  V    +P
Sbjct: 2  YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVP 46

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAA 56
          +D +V+G G  G+ A   LA+ G+   +++         
Sbjct: 4  FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNG 42

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 53.3 bits (127), Expect = 3e-08
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 14 KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTE 59
          K KK   L++G G +G      LA  G  V ++++R  IGG +   
Sbjct: 1  KSKK--ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDA 44

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 50.9 bits (120), Expect = 5e-08
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERR 49
          +D L++G G  G  AA Y AR G+   ++  R
Sbjct: 2  YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER 33

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 52.6 bits (125), Expect = 5e-08
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 13 LKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57
          L  +++DA+VIG G  G+ AA  ++++G + A+L +        V
Sbjct: 3  LPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTV 47

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 51.4 bits (122), Expect = 6e-08
 Identities = 29/148 (19%), Positives = 57/148 (38%), Gaps = 10/148 (6%)

Query: 16  KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQS 75
            + + LV+G G  G  AA   A+ G  V ++E+ + +GG  +    IP       S+   
Sbjct: 2   IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LGGVCLNVGCIPSKALISASHRYE 60

Query: 76  LLRPSLIKC---------GTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSP 126
             + S               ++ E    VV+  +  V  + +    +  +      D++ 
Sbjct: 61  QAKHSEEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANT 120

Query: 127 PELLQGSSSYSHQFKNKIRNSAFWAHCL 154
             ++ G S+ ++ FKN I  +      L
Sbjct: 121 VRVVNGDSAQTYTFKNAIIATGSRPIEL 148

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 51.4 bits (122), Expect = 1e-07
 Identities = 16/36 (44%), Positives = 20/36 (55%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
          D LV+G G +GL A   L   G SV V+E    +GG
Sbjct: 9  DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG 44

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 18/45 (40%), Positives = 23/45 (51%)

Query: 13 LKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57
          +K +  D+LVIGGG  GL AA    + GLS  VL    V    + 
Sbjct: 1  MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSA 45

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 49.6 bits (117), Expect = 2e-07
 Identities = 34/219 (15%), Positives = 74/219 (33%), Gaps = 16/219 (7%)

Query: 14  KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYL 73
           +  +   L+IGGG  G  AA    + G+   ++E +  +GG  +    IP       +  
Sbjct: 2   QTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA-LGGTCLNIGCIPSKALIHVAEQ 60

Query: 74  QSLLRPSLIKCGTRIGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGS 133
                         I      +   +S+   A  +  +D+ +  V  L      +++ G 
Sbjct: 61  FHQASRFTEPSPLGISVASPRLDIGQSV---AWKDGIVDRLTTGVAALLKKHGVKVVHGW 117

Query: 134 SSYSHQFKNKIRNSAFWAHCLRRAIS----------LGQKDLVEFVDLLLSPASKVLNKW 183
           +      + ++         L  A              +   +E +DL ++ A+  +++ 
Sbjct: 118 AKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDER 177

Query: 184 FETDVLKATLATDAVIGTMSSVHT-PGSGYVLLHHVMGE 221
            +T +     A   V G     H     G ++   + G+
Sbjct: 178 CQTSM-HNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGK 215

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 48.8 bits (115), Expect = 3e-07
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 13 LKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50
          L+       ++G G    TAA Y ARA L   + E   
Sbjct: 1  LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM 38

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 49.3 bits (117), Expect = 3e-07
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLE 47
          +  L++G G +G   A +LA+ G+ V +L 
Sbjct: 3  YQVLIVGAGFSGAETAFWLAQKGVRVGLLT 32

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 6e-07
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57
            +D LVIGGG  GL +A   A  G   AV+E    +GG  V
Sbjct: 2  ASYDYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCV 42

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 49.1 bits (116), Expect = 8e-07
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 15/65 (23%)

Query: 17 KWDALVIGGGHNGLTAAAYLAR------AGLSVAVLERR-----HVIGGA----AVTEEL 61
          + D +++G G  GL+AA  L +        L V ++E+      H + GA       EEL
Sbjct: 32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEEL 91

Query: 62 IPGFK 66
           P +K
Sbjct: 92 FPDWK 96

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.6 bits (112), Expect = 2e-06
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERR 49
          K    +IG G +GL     L +AG+   +LER+
Sbjct: 2  KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 38/263 (14%), Positives = 65/263 (24%), Gaps = 31/263 (11%)

Query: 19  DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLR 78
             +V+G G  GL++A  LAR G SV +L R      ++ T                +   
Sbjct: 8   RVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANWTPFMTLTDGP 67

Query: 79  PSLIKCGTRIGETWNEV-----VEAKSIIVYAIFEDQLDKFSQFVDLL-FDSSPPELLQG 132
                  +   +    V     +  K    +A  ED L           +   P      
Sbjct: 68  RQAKWEESTFKKWVELVPTGHAMWLKGTRRFAQNEDGLLGHWYKDITPNYRPLPSSECPP 127

Query: 133 SSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKAT 192
            +         +    +  +  R    LG       V  L            +  V    
Sbjct: 128 GAIGVTYDTLSVHAPKYCQYLARELQKLGATFERRTVTSLEQAFD-----GADLVVNATG 182

Query: 193 LATDAVIGTMSSVHTPGSGYVLLHHVM-----------------GETDGNPGIWSYVEGG 235
           L   ++ G                 +                   +      + +Y    
Sbjct: 183 LGAKSIAGIDDQARGGPRVEAERIVLPLDRTKSPLSLGRGSARAAKEKEVTLVHAYGFSS 242

Query: 236 MGSVSMAIGSAAREAGAHIVTRA 258
            G    + G+A  E  A +V  A
Sbjct: 243 AG-YQQSWGAA--EDVAQLVDEA 262

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54
          D ++IGGG  GL AA   A+    V VL+       
Sbjct: 5  DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPL 40

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 46.8 bits (110), Expect = 3e-06
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 11 SALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57
          + L E   D L+IG G  GL+ A  LA     V VL +  V  G+  
Sbjct: 1  NTLPEHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGSTF 46

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 46.5 bits (109), Expect = 4e-06
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLER 48
          +  ALVIG G+ G  AA  L +AG+   ++E 
Sbjct: 7  RVPALVIGSGYGGAVAALRLTQAGIPTQIVEM 38

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 45.8 bits (107), Expect = 5e-06
 Identities = 14/57 (24%), Positives = 19/57 (33%)

Query: 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSY 72
          K +D +VIG G  GL AA   A        +    ++ G      L        C  
Sbjct: 2  KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVP 58

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 46.1 bits (108), Expect = 6e-06
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLSVAVLER 48
           A+VIG G+    +A  L  AG+   +LE 
Sbjct: 4  PAVVIGTGYGAAVSALRLGEAGVQTLMLEM 33

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 45.1 bits (105), Expect = 8e-06
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 21 LVIGGGHNGLTAAAYLARAGLSVAVLERRH 50
           V+GG  +GLTAA  L  AG+ V V ER  
Sbjct: 8  AVVGGSISGLTAALMLRDAGVDVDVYERSP 37

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 16 KKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRHVIGG 54
          + +D +VIG G  GL A    A      VAV++ +   G 
Sbjct: 2  RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGP 41

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 21 LVIGGGHNGLTAAAYLARAGL---SVAVLERRHVIGGAAVTEELIPGFKFSRCSY 72
          +++GGG  G  AA   A +      V V++    IGGAAV ++ +P   F   + 
Sbjct: 5  VILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTG 58

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 21  LVIGGGHNGLTAAAYLARAGLS-VAVLERRHVIGG--AAVTEELIPGFKFSRCSYLQSLL 77
            ++G G   ++ A++LAR G S + + E++  +GG   +   +    +            
Sbjct: 8   ALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKD 67

Query: 78  RPSLIKCGTRIGETWNEVVEAKSIIVYAIF 107
               I CG  + E    +   K     A F
Sbjct: 68  LGVKIICGKSLSENEITLNTLKEEGYKAAF 97

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 22 VIGGGHNGLTAAAYLARAGL--SVAVLERRHVIGG 54
          V+G G  G   A +L +      V + E++ V  G
Sbjct: 6  VVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG 40

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 10/36 (27%), Positives = 13/36 (36%)

Query: 21 LVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAA 56
          +VIG G  GL+ A  +     SV       V     
Sbjct: 4  VVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRF 39

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 17 KWDALVIGGGHNGLTAAAYLAR----AGLSVAVLERRHVIGGAAV 57
          + D L+IGGG +G  AA   A      GL V ++E+  V    AV
Sbjct: 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAV 65

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 19 DALVIGGGHNGLTAAAYLARAGL-SVAVLERRHVIG--GAAVT 58
          D L+ G G  GL+ A  L +AG+  V +LE    I   G  + 
Sbjct: 3  DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGIN 45

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 42.7 bits (99), Expect = 8e-05
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 21 LVIGGGHNGLTAAAYLARAGL--SVAVLERRHVIGG 54
           +IG G +GL  A  L        V + ERR   GG
Sbjct: 8  AIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 43

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 42.4 bits (98), Expect = 8e-05
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 19 DALVIGGGHNGLTAAAYLARAGLS-VAVLERRHVIGGAAVT 58
            ++IG G  G   A  L   G + + VL++  +      T
Sbjct: 3  RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGST 43

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 42.3 bits (98), Expect = 9e-05
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 13 LKEKKWDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIGGAAV 57
          ++  + D  ++G G  GL AA   A+A     +A++ + + +    V
Sbjct: 1  MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTV 47

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 15 EKKWDALVIGGGHNGLTAAAYLA-----RAGLSVAVLERR 49
          E   D L++G G  GL AA  L+     +  L V ++++R
Sbjct: 5  ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKR 44

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 7/40 (17%)

Query: 22 VIGGGHNGLTAAAYLARAG-------LSVAVLERRHVIGG 54
          ++G G +   AAA L +A        ++V +LE      G
Sbjct: 7  IVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG 46

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLER 48
          +D +++G G  G+ AA  L+ AG  V +LER
Sbjct: 3  YDYIIVGAGPGGIIAADRLSEAGKKVLLLER 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	531
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.88
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.86
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.84
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.84
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.82
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.7
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.68
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.67
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.64
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.63
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.62
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.54
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.52
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.46
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.44
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.43
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.41
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.35
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.3
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.28
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.23
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.22
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.22
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.16
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.16
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	99.11
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.1
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.1
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.07
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.06
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.06
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.06
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	99.04
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.03
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.02
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.02
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.99
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.99
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.98
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.98
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.97
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.97
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.94
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.94
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.9
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.9
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.88
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.85
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.84
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.82
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.82
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.81
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.8
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.79
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.77
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.77
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.75
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.75
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.74
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.73
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.7
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.69
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.59
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.56
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.55
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.55
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.55
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.54
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.53
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.52
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.45
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.43
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.42
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.41
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.4
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.39
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.35
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.35
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.33
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.32
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.26
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.12
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.09
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.07
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.8
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.6
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.59
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.31
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.31
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.3
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.29
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.13
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.11
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.0
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.97
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.87
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.82
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.75
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.74
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.74
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.72
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.72
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.58
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.43
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.38
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.27
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.23
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.18
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.16
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.14
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.77
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.75
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.59
d2ivda2	108	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.56
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.52
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.45
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.44
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.27
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.18
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.96
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.88
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.78
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.6
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.54
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.54
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	94.48
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.46
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.33
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.33
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	94.21
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.09
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	94.08
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.01
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.92
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	93.9
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	93.86
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.77
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	93.73
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	93.67
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.61
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	93.45
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.4
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.37
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.36
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.21
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.17
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.13
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	93.04
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.79
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.62
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	92.55
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	92.51
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	92.39
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	92.09
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	92.01
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	91.25
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	91.18
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	90.99
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	90.92
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	90.75
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	90.7
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	90.67
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.58
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	90.35
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	90.34
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.05
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	89.97
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	89.82
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	89.71
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	89.6
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	89.59
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	89.52
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	89.44
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	89.32
d1seza2	112	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	89.11
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	89.05
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	89.01
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	88.84
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	88.66
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	88.57
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	88.46
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	87.9
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	87.17
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	87.11
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	86.96
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	86.64
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	86.06
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	86.04
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	85.94
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	85.76
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	85.76
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	85.7
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	85.24
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	85.17
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	85.14
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	85.05
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	84.95
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	84.79
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	84.55
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	84.44
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	84.38
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	84.19
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	84.01
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	83.96
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	83.66
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	83.31
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	83.27
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	82.78
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	82.69
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	82.23
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	82.18
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	82.17
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	82.16
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	81.91
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	81.88
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	81.63
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	81.54
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	81.49
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	81.2
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	81.19
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	81.16
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	81.1
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	80.79
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	80.75
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	80.66
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	80.65
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	80.62
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	80.55
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	80.48
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	80.3
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	80.25
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	80.03

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.3e-21  Score=189.89  Aligned_cols=255  Identities=20%  Similarity=0.139  Sum_probs=144.0

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccc---
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGET---   91 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~---   91 (531)
                      ||+|||||++||+||++|+++|++|+|||+++++||++.+....+|+.+|.|++++....+.+++.    |++....   
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~   80 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVNEV   80 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEEECCCS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECCCCcEEeCCceEeCCCChHHHHHHHHcCCcceeccCc
Confidence            899999999999999999999999999999999999999877678999999998766555554433    4421000   


Q ss_pred             --------hhhhc------cchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHH
Q 048009           92 --------WNEVV------EAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRA  157 (531)
Q Consensus        92 --------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (531)
                              .....      .........    ....+.................     ..                   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-----~~-------------------  132 (383)
T d2v5za1          81 ERLIHHVKGKSYPFRGPFPPVWNPITYL----DHNNFWRTMDDMGREIPSDAPW-----KA-------------------  132 (383)
T ss_dssp             SEEEEEETTEEEEECSSSCCCCSHHHHH----HHHHHHHHHHHHHTTSCTTCGG-----GS-------------------
T ss_pred             cceEEecCcccccccccccchhhhhhhh----hHHHHHHHHHHhhhhccccccc-----ch-------------------
Confidence                    00000      000011111    1111111111111111100000     00                   


Q ss_pred             HhcChhhHHHHHHHHhccHHHHhhcccCChhHHHHHhh--hhhhccCCCCCCCChHHHHHHHH------hhccCCCCCcc
Q 048009          158 ISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLAT--DAVIGTMSSVHTPGSGYVLLHHV------MGETDGNPGIW  229 (531)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  229 (531)
                              .........+..+++.+....+........  ....+.  ...............      ........+.+
T Consensus       133 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (383)
T d2v5za1         133 --------PLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTA--ETHEVSALWFLWYVKQCGGTTRIISTTNGGQE  202 (383)
T ss_dssp             --------TTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSS--CTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTS
T ss_pred             --------hhhhhhhhhHHHHHHHHhccchHHHHHHHHhhhhhhcc--ccchhhHHHHHHHHHhhcccccccccccCcce
Confidence                    001111223334444443333333332221  011110  111111111110000      00012222333


Q ss_pred             ccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChH
Q 048009          230 SYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDD  309 (531)
Q Consensus       230 ~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~  309 (531)
                      ..+.+|...+.+.+.   ++.|++|++|++|++|..++ +++. |++.||++++||+||+|+++.. +.++...+.+|+.
T Consensus       203 ~~~~~~~~~~~~~l~---~~~g~~i~~~~~v~~I~~~~-~~v~-v~~~~g~~~~ad~vI~a~p~~~-~~~~~~~p~l~~~  276 (383)
T d2v5za1         203 RKFVGGSGQVSERIM---DLLGDRVKLERPVIYIDQTR-ENVL-VETLNHEMYEAKYVISAIPPTL-GMKIHFNPPLPMM  276 (383)
T ss_dssp             EEETTCTHHHHHHHH---HHHGGGEEESCCEEEEECSS-SSEE-EEETTSCEEEESEEEECSCGGG-GGGSEEESCCCHH
T ss_pred             eeeccchhHHHHHHH---HHcCCeEEecCcceEEEecC-CeEE-EEECCCCEEECCEEEECCCHHH-HhhCccCCCCCHH
Confidence            467899999988885   46789999999999999887 6665 9999999999999999888776 4566544558887


Q ss_pred             HHHHhhcc
Q 048009          310 FILSIKHS  317 (531)
Q Consensus       310 ~~~~i~~~  317 (531)
                      ..+.+..+
T Consensus       277 ~~~~~~~~  284 (383)
T d2v5za1         277 RNQMITRV  284 (383)
T ss_dssp             HHHHTTSC
T ss_pred             HHHHHHHh
Confidence            77766543

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.3e-21  Score=181.41  Aligned_cols=63  Identities=13%  Similarity=0.341  Sum_probs=53.7

Q ss_pred             CccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCC-CceeEEEeCCCcEEEcCeEEec
Q 048009          227 GIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDS-GRVNGVQLADGAQVHSSIVLSN  290 (531)
Q Consensus       227 ~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~-g~~~~V~~~~g~~~~ad~VV~a  290 (531)
                      +.+.+|+||+++|+++|++.++++|++|++|++|++|..+++ +++.+|+ .||+++.||+||++
T Consensus       226 ~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~-~~g~~~~ad~VI~~  289 (297)
T d2bcgg1         226 SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK-TKLGTFKAPLVIAD  289 (297)
T ss_dssp             CSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEE-ETTEEEECSCEEEC
T ss_pred             CcceeccCcHHHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEE-cCCEEEECCEEEEC
Confidence            345589999999999999999999999999999999987542 5676665 57788999999995

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.84  E-value=2e-20  Score=177.91  Aligned_cols=63  Identities=27%  Similarity=0.398  Sum_probs=56.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhh
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSL   81 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~   81 (531)
                      +||+|||||++||+||++|+++|++|+|||+++++||++.++. .+|+.+|.|++++...++.+
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~-~~g~~~d~G~~~~~~~~~~~   63 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHA-LAGYLVEQGPNSFLDREPAT   63 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEE-ETTEEEESSCCCEETTCHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEe-eCCEEEecCceEEecCCHHH
Confidence            5899999999999999999999999999999999999999876 78999999987765555544

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.82  E-value=3.4e-19  Score=171.51  Aligned_cols=273  Identities=15%  Similarity=0.039  Sum_probs=137.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeeccc-ccCCeeecccchhhhcchhhhhhc----Cccccc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEE-LIPGFKFSRCSYLQSLLRPSLIKC----GTRIGE   90 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~-~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~   90 (531)
                      +..+|+|||||++||+||++|+++|++|+|||+++++||++.+.. ...|+.+|.|++++....+.+.+.    ++....
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~~~~~~~  108 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLNE  108 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEEEecCCCCceeccCceeecCccHHHHHHHHHhCCccce
Confidence            457999999999999999999999999999999999999998865 456899999987765544444332    332100


Q ss_pred             c----hhhhc-cchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhhH
Q 048009           91 T----WNEVV-EAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDL  165 (531)
Q Consensus        91 ~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (531)
                      .    ..... ...........       ....  ............ ...........     ............  ..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~--~~  171 (370)
T d2iida1         109 FSQENDNAWYFIKNIRKKVGEV-------KKDP--GLLKYPVKPSEA-GKSAGQLYEES-----LGKVVEELKRTN--CS  171 (370)
T ss_dssp             ECSCCTTSEEEETTEEEEHHHH-------HHCG--GGGCCCCCGGGT-TCCHHHHHHHH-----THHHHHHHHHSC--HH
T ss_pred             eeccCCceEEecCCccccchhh-------hhhh--hhhhhhhhhhhh-hhhhHHHHHHH-----HHHHHHHHHhhh--hh
Confidence            0    00000 00000000000       0000  000000000000 00000000000     000000000000  00


Q ss_pred             HHHHHHHhccHHHHhhcccC-ChhHHHHHhhhhhhccCCCCCCCChHHHHHHHHhhccCCCCCccccccCchHHHHHHHH
Q 048009          166 VEFVDLLLSPASKVLNKWFE-TDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIG  244 (531)
Q Consensus       166 ~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~  244 (531)
                      ..+......+..+++..... .......+...  .... ...............   .......+..+.+|+..+.++|.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~  245 (370)
T d2iida1         172 YILNKYDTYSTKEYLIKEGDLSPGAVDMIGDL--LNED-SGYYVSFIESLKHDD---IFAYEKRFDEIVDGMDKLPTAMY  245 (370)
T ss_dssp             HHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHH--TTCG-GGTTSBHHHHHHHHH---HHTTCCCEEEETTCTTHHHHHHH
T ss_pred             hhhhhccchhHHHHHHHhccccHHHHHHhhcc--cccc-chhhhHHHhhhhhhh---hhccccccccchhhHHHHHHHHH
Confidence            11111223333444433222 22221211110  0000 001111111111111   11223444578999999998885


Q ss_pred             HHHHHcCcEEEcCcceeEEEecCCCceeEEEe--C--CCcEEEcCeEEecCChHhHHhhcCCCCCCChHHHHHhhcc
Q 048009          245 SAAREAGAHIVTRAEVSQLMINDSGRVNGVQL--A--DGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHS  317 (531)
Q Consensus       245 ~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~--~--~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i~~~  317 (531)
                         ++.|++|+++++|++|..++ +++. |..  .  ++++++||+||+|+++.. +.++.-.+.+++.+.+.++.+
T Consensus       246 ---~~~g~~i~~~~~V~~I~~~~-~~v~-v~~~~~~~~~~~~~aD~VI~A~p~~~-l~~i~~~p~l~~~~~~ai~~~  316 (370)
T d2iida1         246 ---RDIQDKVHFNAQVIKIQQND-QKVT-VVYETLSKETPSVTADYVIVCTTSRA-VRLIKFNPPLLPKKAHALRSV  316 (370)
T ss_dssp             ---HHTGGGEESSCEEEEEEECS-SCEE-EEEECSSSCCCEEEESEEEECSCHHH-HTTSEEESCCCHHHHHHHHHC
T ss_pred             ---HhcCCccccCceEEEEEEeC-CeEE-EEEEecCCCeEEEEeeEEEecCCHHH-HhhCccCCCCCHHHHHHHHhc
Confidence               46789999999999999988 6654 333  2  345899999999888776 455533445888777776654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.70  E-value=1.8e-17  Score=153.60  Aligned_cols=61  Identities=18%  Similarity=0.297  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+..+|.+.++++|++|+++++|++|..++ +++ .|++++|+ +.||+||+|+|+|.  .+|++
T Consensus       150 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~-~~v-~V~t~~g~-i~a~~VViAaG~~s--~~l~~  210 (281)
T d2gf3a1         150 ENCIRAYRELAEARGAKVLTHTRVEDFDISP-DSV-KIETANGS-YTADKLIVSMGAWN--SKLLS  210 (281)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECS-SCE-EEEETTEE-EEEEEEEECCGGGH--HHHGG
T ss_pred             cccccccccccccccccccCCcEEEEEEEEC-CEE-EEEECCcE-EEcCEEEECCCCcc--hhhHH
Confidence            5788999999999999999999999999987 665 49998885 99999999999998  56654

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.68  E-value=2.6e-17  Score=154.05  Aligned_cols=58  Identities=26%  Similarity=0.412  Sum_probs=52.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC-cEEEEccCCCCCceeecccccCCeeecccchhhhc
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL-SVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSL   76 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~   76 (531)
                      +||+|||||++||+||++|+++|+ +|+||||++++||++.+.. .+|+.+|.|++++..
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~-~~g~~~d~G~~~~~~   59 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTN-FAGINVELGANWVEG   59 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEE-ETTEEEESSCCEEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEec-cCCEEEecCCeEEec
Confidence            589999999999999999999996 7999999999999999876 789999999876543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.67  E-value=3.2e-17  Score=156.24  Aligned_cols=64  Identities=27%  Similarity=0.303  Sum_probs=56.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhh
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLI   82 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~   82 (531)
                      .+|+|||||++||+||++|+++|++|+|||+++++||++.+.. .+|+.+|.|++++....+.+.
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~-~~g~~~d~G~~~~~~~~~~~~   65 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS-QDGLIWDEGANTMTESEGDVT   65 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEE-ETTEEEESSCCCBCCCSHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEec-cCCEEEecCceEEeCCCHHHH
Confidence            5799999999999999999999999999999999999999876 789999999987655555443

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.64  E-value=6.7e-16  Score=142.42  Aligned_cols=56  Identities=20%  Similarity=0.156  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.++++|++|+.+++|++|..++  ++++|++++|+ +.||.||+|+|+|.
T Consensus       151 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~~~V~t~~g~-i~a~~vV~AaG~~s  206 (276)
T d1ryia1         151 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDG--EALFIKTPSGD-VWANHVVVASGVWS  206 (276)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSS--SSEEEEETTEE-EEEEEEEECCGGGT
T ss_pred             ccchhHHHHHHHHcCCEEecceEEEeEEeec--ceEEEecCCeE-EEcCEEEECCCccH
Confidence            5788999999999999999999999998764  45679998885 99999999999997

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.63  E-value=1.8e-15  Score=137.40  Aligned_cols=59  Identities=20%  Similarity=0.252  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ...+.+.|.+.+++.|++|+++++|++|..++ +++.+|.+++|+.++||+||+|+|...
T Consensus       109 ~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~~~~~v~~~~g~~i~a~~vI~AtGg~S  167 (251)
T d2i0za1         109 AQSVVDALLTRLKDLGVKIRTNTPVETIEYEN-GQTKAVILQTGEVLETNHVVIAVGGKS  167 (251)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             HHHHHHHHHHHHHHcCCcccCCcEEEEEEEEC-CEEEEEEeCCCCeEecCeEEEccCCcc
Confidence            35788899999999999999999999999988 888889999999999999999999766

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.62  E-value=2.3e-15  Score=140.91  Aligned_cols=57  Identities=28%  Similarity=0.349  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+..+|.+.+++.|++|+.+++|++|..++ +++++|++++|+ ++||+||+|+|+|.
T Consensus       148 ~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~-~~v~~V~T~~g~-i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         148 ARAVQLLIKRTESAGVTYRGSTTVTGIEQSG-GRVTGVQTADGV-IPADIVVSCAGFWG  204 (305)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETTEE-EECSEEEECCGGGH
T ss_pred             hhhhhhHHhhhhcccccccCCceEEEEEEeC-CEEEEEecccee-EECCEEEEecchhH
Confidence            5789999999999999999999999999998 999999998885 99999999999997

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.54  E-value=1.6e-14  Score=135.29  Aligned_cols=60  Identities=13%  Similarity=0.191  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC--Cc--EEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD--GA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~--g~--~~~ad~VV~aa~~~~  295 (531)
                      ...+...+.+.+++.|++|+++++|+++..+++|++.+|.+.+  +.  ++.|+.||+|+|.+.
T Consensus       144 ~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~  207 (308)
T d1y0pa2         144 GAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFA  207 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccCccc
Confidence            3468888999999999999999999999887658999998753  32  688999999999776

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.52  E-value=5.4e-14  Score=127.33  Aligned_cols=65  Identities=20%  Similarity=0.247  Sum_probs=51.0

Q ss_pred             cccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCC-ceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          231 YVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSG-RVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       231 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g-~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ++......+.+.|.+.+++.|++|+++++|++|...+++ .+..+...++++++||+||+|+|...
T Consensus       103 ~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S  168 (253)
T d2gqfa1         103 FCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLS  168 (253)
T ss_dssp             EETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSS
T ss_pred             ccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCccc
Confidence            344455688999999999999999999999999886533 33334556777899999999999654

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.46  E-value=6.8e-14  Score=131.67  Aligned_cols=60  Identities=20%  Similarity=0.304  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC--Cc--EEEcCeEEecCChHh
Q 048009          236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD--GA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~--g~--~~~ad~VV~aa~~~~  295 (531)
                      ...+...|.+.+.++|++|+++++|++|..+++|+|++|...+  +.  ++.|+.||+|+|-+.
T Consensus       151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~  214 (322)
T d1d4ca2         151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFA  214 (322)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             hHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCCCcc
Confidence            4578899999999999999999999999987658999988753  32  589999999999765

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.44  E-value=5.3e-13  Score=124.98  Aligned_cols=59  Identities=20%  Similarity=0.279  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.++++|++++++++|+++..++++++.+|...  ++.  .+.|+.||+|+|.+.
T Consensus       148 ~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~  210 (317)
T d1qo8a2         148 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYG  210 (317)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred             hhhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEeccccc
Confidence            36889999999999999999999999987655899988775  343  578999999999876

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.43  E-value=6.9e-13  Score=122.01  Aligned_cols=58  Identities=10%  Similarity=0.130  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHcCc--EEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          238 SVSMAIGSAAREAGA--HIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~--~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+.+.|.+.+++.+.  .|++|++|+++..+++...+.|++.+++++++|.||+|+|...
T Consensus        86 e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls  145 (298)
T d1w4xa1          86 EILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLS  145 (298)
T ss_dssp             HHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCC
T ss_pred             hHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccc
Confidence            455666667777776  5999999999997653455679999999999999999998644

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.1e-14  Score=136.25  Aligned_cols=60  Identities=28%  Similarity=0.392  Sum_probs=55.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSL   76 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~   76 (531)
                      ++.||||||||++||+||++|+++|++|+|||+++++|||+.+.. .+|+.+|.|++++..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~-~~g~~~d~G~~~i~~   63 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFR-KGNYVADLGAMVVTG   63 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEE-ETTEEEESSCCEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEE-eCCEEEECCCEEECC
Confidence            568999999999999999999999999999999999999999976 689999999987643

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=2e-13  Score=126.29  Aligned_cols=67  Identities=25%  Similarity=0.373  Sum_probs=58.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeee-cccchhhhcchhhhhhc
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKF-SRCSYLQSLLRPSLIKC   84 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~-d~g~~~~~~~~~~~~~~   84 (531)
                      ++||+|||||++||+||++|+++|++|+|+|+++++||+|.+.. ..|+.+ +.|+|++....+.++..
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~-~~g~~~~~~G~h~f~t~~~~v~~~   68 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTED-CEGIQIHKYGAHIFHTNDKYIWDY   68 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEE-ETTEEEETTSCCCEEESCHHHHHH
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeC-cCCEEEeecCcEEEEecchHHHHH
Confidence            58999999999999999999999999999999999999999875 678765 88999876666665554

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.30  E-value=6.3e-13  Score=123.67  Aligned_cols=68  Identities=18%  Similarity=0.247  Sum_probs=58.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeeccc--ccCCeeecccchhhhcchhhhhhc
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEE--LIPGFKFSRCSYLQSLLRPSLIKC   84 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~--~~~g~~~d~g~~~~~~~~~~~~~~   84 (531)
                      +.+|+|||||++||+||+.|+++|++|+|+|+++++||+|.+..  ..+++.++.|+|++....+.++..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~~~~~~g~~~~~~Gphif~t~~~~v~~~   71 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNY   71 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHH
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEEEecCCCceEEecCceeecCccHHHHHH
Confidence            57899999999999999999999999999999999999998764  356789999999877665555443

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=2.7e-11  Score=94.09  Aligned_cols=52  Identities=17%  Similarity=0.233  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCC
Q 048009          240 SMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNAT  292 (531)
Q Consensus       240 ~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~  292 (531)
                      .+.+.+.++++|+++++++.|++|..++++.+ .|++++|+++.+|.||+|+|
T Consensus        65 ~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          65 SETLVEVMNAEGPQLHTNAIPKAVVKNTDGSL-TLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HHHHHHHHHHHSCEEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEECSC
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEE-EEEECCCCEEEcCEEEEecC
Confidence            44456667888999999999999998764554 48899999999999999886

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.23  E-value=7.9e-11  Score=111.05  Aligned_cols=58  Identities=21%  Similarity=0.302  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+..+|.+.+++.|++|+.++.|.++..++ +++.++..   .+|+  .+.|+.||+|+|...
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~-~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~  220 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQD-GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG  220 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEET-TEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhccccccceeeeeeccccc-ccccceeEEeccCCcEEEEecCeEEEeccccc
Confidence            4688889999999999999999999999888 88877665   3565  578999999998765

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.22  E-value=9.3e-11  Score=93.34  Aligned_cols=52  Identities=23%  Similarity=0.346  Sum_probs=43.4

Q ss_pred             HHHHHHHHHcCcEEEcCcceeEEEecC-CCceeEEEeCCCcEEEcCeEEecCC
Q 048009          241 MAIGSAAREAGAHIVTRAEVSQLMIND-SGRVNGVQLADGAQVHSSIVLSNAT  292 (531)
Q Consensus       241 ~~l~~~~~~~G~~i~~~~~V~~I~~~~-~g~~~~V~~~~g~~~~ad~VV~aa~  292 (531)
                      +.+.+.++++|+++++|++|++|.... ++++..|.++||+++.||.||+|+|
T Consensus        81 ~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          81 AFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             HHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             hhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            334556788999999999999998753 3567789999999999999999876

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.22  E-value=2.4e-11  Score=114.57  Aligned_cols=42  Identities=31%  Similarity=0.359  Sum_probs=37.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcC--CcEEEEccCCCCCceeec
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAG--LSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G--~~V~v~E~~~~~GG~~~s   58 (531)
                      ..+|+|||||++||+||..|++.|  ++|+||||++.+||....
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~   47 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccc
Confidence            467999999999999999998876  699999999999998654

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.16  E-value=1.2e-10  Score=111.28  Aligned_cols=36  Identities=36%  Similarity=0.523  Sum_probs=33.6

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..++||||||+|.+|+.+|.+|+++|++|+|+|+..
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            457999999999999999999999999999999963

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.16  E-value=1.6e-10  Score=90.08  Aligned_cols=47  Identities=17%  Similarity=0.229  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCC
Q 048009          240 SMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNAT  292 (531)
Q Consensus       240 ~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~  292 (531)
                      .+.+.+.++++|++++++++|+++..   +   .|+++||+++.||.||+|+|
T Consensus        75 ~~~~~~~l~~~GV~i~~~~~v~~~~~---~---~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          75 ADFVARYHAAQGVDLRFERSVTGSVD---G---VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHHHHHHTTTCEEEESCCEEEEET---T---EEEETTSCEEECSEEEECSC
T ss_pred             HHHHHHHHHHCCcEEEeCCEEEEEeC---C---EEEECCCCEEECCEEEEeeC
Confidence            34456667899999999999998763   3   27789999999999999876

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=99.11  E-value=6.7e-10  Score=105.93  Aligned_cols=34  Identities=32%  Similarity=0.419  Sum_probs=31.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      .||||||+|.+|+.+|.+|+++|++|+|+|+...
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   36 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence            5899999999999999999999999999999643

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=5.9e-11  Score=110.17  Aligned_cols=57  Identities=14%  Similarity=0.246  Sum_probs=43.0

Q ss_pred             HHHHHH-HHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009          238 SVSMAI-GSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       238 ~l~~~l-~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~  295 (531)
                      .+...+ .+..+..+++|+.++.|+++..++ |++.||..   .+|+  .+.|+.||+|+|...
T Consensus       135 ~~~~~~l~~~~~~~~v~i~~~~~v~~Ll~d~-g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g  197 (311)
T d1kf6a2         135 HMLHTLFQTSLQFPQIQRFDEHFVLDILVDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG  197 (311)
T ss_dssp             HHHHHHHHHHTTCTTEEEEETEEEEEEEEET-TEEEEEEEEETTTTEEEEEECSCEEECCCCCG
T ss_pred             HHHHhHHHHHHccCcceeEeeeEeeeeEecC-CcceeEEEEEcCCCcEEEEECCEEEEcCCCcc
Confidence            344444 444455579999999999999988 99888764   4565  457999999999765

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.10  E-value=7.7e-10  Score=85.54  Aligned_cols=52  Identities=21%  Similarity=0.251  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEE-cCeEEec
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVH-SSIVLSN  290 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~-ad~VV~a  290 (531)
                      .+.+.+.+.++++|++++++++|++|+..+++.+ .|+++||+.+. +|.||+|
T Consensus        64 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~-~v~~~~G~~~~~~D~Vi~A  116 (117)
T d1onfa2          64 SVINVLENDMKKNNINIVTFADVVEIKKVSDKNL-SIHLSDGRIYEHFDHVIYC  116 (117)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCE-EEEETTSCEEEEESEEEEC
T ss_pred             HHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeE-EEEECCCCEEEeCCEEEEe
Confidence            3445566778889999999999999997764554 59999998774 7999996

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=2.7e-10  Score=105.62  Aligned_cols=44  Identities=39%  Similarity=0.541  Sum_probs=36.7

Q ss_pred             ccCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009           13 LKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        13 ~~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~   57 (531)
                      ++..++||+|||+|++||+||+.+++.| +|+|+||.+..||.+.
T Consensus         3 ~p~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s~   46 (305)
T d1chua2           3 LPEHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGSTF   46 (305)
T ss_dssp             CCSEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC----
T ss_pred             CCcccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCchH
Confidence            4555799999999999999999999988 9999999998887754

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.06  E-value=1.5e-09  Score=84.40  Aligned_cols=53  Identities=15%  Similarity=0.238  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCC
Q 048009          239 VSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNAT  292 (531)
Q Consensus       239 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~  292 (531)
                      +.+.+.+.++++|++|++++.|++|..++ +.+..|.++||+++.||.||+|+|
T Consensus        64 ~~~~~~~~l~~~GI~v~~~~~v~~i~~~~-~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          64 LRKQLTEQLRANGINVRTHENPAKVTKNA-DGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             HHHHHHHHHHHTTEEEEETCCEEEEEECT-TSCEEEEETTSCEEEESEEEECSC
T ss_pred             hhHHHHHHHhhCcEEEEcCCEEEEEEECC-CCEEEEEECCCCEEEcCEEEEecC
Confidence            34445667889999999999999999876 344569999999999999999987

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.06  E-value=1.4e-09  Score=84.49  Aligned_cols=53  Identities=15%  Similarity=0.199  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC---cEEEcCeEEecCC
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG---AQVHSSIVLSNAT  292 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g---~~~~ad~VV~aa~  292 (531)
                      ++.+.+.+.++++|++|+++++|++|+.++ +++. |++.++   +++.||.||+|+|
T Consensus        64 ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~v~-v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          64 QVAKEAQKILTKQGLKILLGARVTGTEVKN-KQVT-VKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             HHHHHHHHHHHHTTEEEEETCEEEEEEECS-SCEE-EEEESSSEEEEEEESEEEECSC
T ss_pred             hhHHHHHHHHHhcCceeecCcEEEEEEEeC-CEEE-EEEEECCCCEEEECCEEEEeeC
Confidence            445556677889999999999999999887 5543 665543   4789999999886

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.06  E-value=1.4e-09  Score=93.49  Aligned_cols=43  Identities=19%  Similarity=0.337  Sum_probs=36.9

Q ss_pred             CcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          251 GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       251 G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +.+|+.. +|+++..++ +++.+|++.+|.++.|+.||+|+|-+.
T Consensus        82 nL~i~q~-~V~dli~e~-~~v~gV~t~~G~~~~AkaVILtTGTFL  124 (230)
T d2cula1          82 PLHLFQA-TATGLLLEG-NRVVGVRTWEGPPARGEKVVLAVGSFL  124 (230)
T ss_dssp             TEEEEEC-CEEEEEEET-TEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             CHHHHhc-cceeeEecc-cceeeEEeccccEEEEeEEEEccCcce
Confidence            5677654 889998888 899999999999999999999998654

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.04  E-value=1.6e-08  Score=96.45  Aligned_cols=121  Identities=14%  Similarity=0.060  Sum_probs=80.8

Q ss_pred             HHHHHHhccHHHHhhcccCChhHHHHHh-hhhhhccCCCCCCC-ChHHHHHH-HHhhccCCCCCccccccCchHHHHHHH
Q 048009          167 EFVDLLLSPASKVLNKWFETDVLKATLA-TDAVIGTMSSVHTP-GSGYVLLH-HVMGETDGNPGIWSYVEGGMGSVSMAI  243 (531)
Q Consensus       167 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~-~~~~~g~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~gG~~~l~~~l  243 (531)
                      .+..+...++.+++..+.-.+.+...+. ..++..   ..... ...+.-+. ++...-.+....+-||..|..+|++++
T Consensus       306 ~~~~~~~~~~~e~l~~~~l~~~~~~~i~~aial~~---~~~~~~~~~l~ri~~yl~Slg~yG~spflyp~YG~gEipQ~F  382 (491)
T d1vg0a1         306 EYRAYEGTTFSEYLKTQKLTPNLQYFVLHSIAMTS---ETTSCTVDGLKATKKFLQCLGRYGNTPFLFPLYGQGELPQCF  382 (491)
T ss_dssp             HHHTTTTSBHHHHHTTSSSCHHHHHHHHHHTTC-----CCSCBHHHHHHHHHHHHHHTTSSSSSSEEEETTCTTHHHHHH
T ss_pred             ccccccCCcHHHHHHHcCCChHHHHHHHhheeccC---CCCccHHHHHHHHHHHHHHHHhhCCCCeEeecCCcchHHHHH
Confidence            3444456788888888776666666553 212111   11111 11111222 221111223345568999999999999


Q ss_pred             HHHHHHcCcEEEcCcceeEEEec-CCCceeEEEeCCCcEEEcCeEEec
Q 048009          244 GSAAREAGAHIVTRAEVSQLMIN-DSGRVNGVQLADGAQVHSSIVLSN  290 (531)
Q Consensus       244 ~~~~~~~G~~i~~~~~V~~I~~~-~~g~~~~V~~~~g~~~~ad~VV~a  290 (531)
                      .+.+.-.|+.+.+|+.|++|..+ +++++.+|.+.+|+++.+++||+.
T Consensus       383 cR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~  430 (491)
T d1vg0a1         383 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIE  430 (491)
T ss_dssp             HHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEE
T ss_pred             HHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEEC
Confidence            99999999999999999999985 237788899999999999999984

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.03  E-value=1.9e-09  Score=84.13  Aligned_cols=53  Identities=17%  Similarity=0.216  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC-----cEEEcCeEEec
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG-----AQVHSSIVLSN  290 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g-----~~~~ad~VV~a  290 (531)
                      .+.+.+.+.++++|++|++|++|++|..++++....+++.++     ++++||.|++|
T Consensus        65 ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          65 EVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             hhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            344556677889999999999999999876465555666544     37899999985

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.5e-09  Score=86.82  Aligned_cols=53  Identities=19%  Similarity=0.330  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCCh
Q 048009          239 VSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATP  293 (531)
Q Consensus       239 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~  293 (531)
                      +.+.+.+.++++|+++++|+.|++|..++ +++. |+++||+++.||.||+|+|.
T Consensus        85 ~~~~~~~~l~~~GV~~~~~~~V~~i~~~~-~~~~-v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          85 LSNWTMEKVRREGVKVMPNAIVQSVGVSS-GKLL-IKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             HHHHHHHHHHTTTCEEECSCCEEEEEEET-TEEE-EEETTSCEEEESEEEECCCE
T ss_pred             HHHHHHHHHHhCCcEEEeCCEEEEEEecC-CEEE-EEECCCCEEECCEEEEeecC
Confidence            34445666789999999999999999876 6654 99999999999999999873

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.02  E-value=5.8e-10  Score=101.04  Aligned_cols=48  Identities=13%  Similarity=0.127  Sum_probs=39.9

Q ss_pred             HcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHh
Q 048009          249 EAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFM  298 (531)
Q Consensus       249 ~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~  298 (531)
                      ..+.+++++++|++|..++ +.+. |+++||+++++|.+|.|.|......
T Consensus       108 ~~~~~~~~~~~v~~~~~~~-~~v~-v~~~dG~~~~~d~~v~adG~~s~~r  155 (265)
T d2voua1         108 FGPERYHTSKCLVGLSQDS-ETVQ-MRFSDGTKAEANWVIGADGGASVVR  155 (265)
T ss_dssp             HCSTTEETTCCEEEEEECS-SCEE-EEETTSCEEEESEEEECCCTTCHHH
T ss_pred             cccceeecCcEEEEEEeeC-CceE-EEECCCCEEEEEEEecccccccccc
Confidence            4468899999999999877 5554 8899999999999999988776543

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.99  E-value=2.3e-09  Score=83.79  Aligned_cols=49  Identities=18%  Similarity=0.249  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEec
Q 048009          239 VSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSN  290 (531)
Q Consensus       239 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~a  290 (531)
                      +.+.+.+.++++|+++++++.|++|..+  +++..| +.||+++.||.||+|
T Consensus        74 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~--~~~~~v-~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2          74 FTDVLTEEMEANNITIATGETVERYEGD--GRVQKV-VTDKNAYDADLVVVA  122 (123)
T ss_dssp             HHHHHHHHHHTTTEEEEESCCEEEEECS--SBCCEE-EESSCEEECSEEEEC
T ss_pred             hHHHHHHHhhcCCeEEEeCceEEEEEcC--CCEEEE-EeCCCEEECCEEEEE
Confidence            3444566678899999999999999864  555545 568888999999986

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=1.7e-10  Score=96.10  Aligned_cols=41  Identities=32%  Similarity=0.464  Sum_probs=38.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCcee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAA   56 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~   56 (531)
                      ...+|+|||||++||+||+.|+++||+|+|||+.+.+||..
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l   82 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQF   82 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTH
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceE
Confidence            45899999999999999999999999999999999999974

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.4e-09  Score=101.86  Aligned_cols=59  Identities=12%  Similarity=0.106  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEE---eCCCc--EEEcCeEEecCChHh
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQ---LADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~---~~~g~--~~~ad~VV~aa~~~~  295 (531)
                      ..+...|.+.+++.+++++.++.+..+..++++++.++.   ..+|+  .+.++.||+|+|...
T Consensus       143 ~~i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~  206 (330)
T d1neka2         143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG  206 (330)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCG
T ss_pred             HHHHHHHHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCcc
Confidence            578899999999999999999999998875546655433   34565  568999999998765

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.98  E-value=3.5e-09  Score=82.19  Aligned_cols=36  Identities=33%  Similarity=0.425  Sum_probs=33.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..+++|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            468999999999999999999999999999998753

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.97  E-value=2e-09  Score=83.19  Aligned_cols=35  Identities=31%  Similarity=0.459  Sum_probs=32.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+++|||||+.|+-+|..|++.|.+|+|+|+.++
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence            36899999999999999999999999999999765

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.97  E-value=6.4e-09  Score=80.52  Aligned_cols=52  Identities=15%  Similarity=0.341  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEec
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSN  290 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~a  290 (531)
                      .+.+.+.+.++++|++++++++|++|+..+++++ .|+++||++++||.||+|
T Consensus        65 ~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~-~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          65 TLREELTKQLTANGIQILTKENPAKVELNADGSK-SVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCE-EEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeE-EEEECCCcEEEeCEEEEe
Confidence            3445567778899999999999999997764554 499999999999999996

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.94  E-value=3.1e-09  Score=83.08  Aligned_cols=35  Identities=31%  Similarity=0.370  Sum_probs=32.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+++|||||..||-.|..|++.|.+|+|+|++++
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence            46899999999999999999999999999999765

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=1.1e-10  Score=103.65  Aligned_cols=48  Identities=38%  Similarity=0.646  Sum_probs=43.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIP   63 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~   63 (531)
                      ++|||+|||||++||+||.+|++.|++|+|+|+++.+||.|....+.+
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~g~~p   51 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIP   51 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEeeccc
Confidence            479999999999999999999999999999999999999987655433

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.90  E-value=2e-09  Score=101.91  Aligned_cols=74  Identities=23%  Similarity=0.234  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCCC-----c--EEEcCe-EEecCChHhHHhhcC-CCCCCC
Q 048009          238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLADG-----A--QVHSSI-VLSNATPYKTFMDLV-PGNILP  307 (531)
Q Consensus       238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~g-----~--~~~ad~-VV~aa~~~~~~~~ll-~~~~~~  307 (531)
                      ....++...+.++ +.+|++++.|++|..++ +++++|++.+.     .  ++.++. ||+|||...+ .+|| ....=|
T Consensus       191 s~~~~yl~~a~~r~nl~i~t~~~V~rI~~d~-~ra~GV~~~~~~~~~~~~~~v~a~~eVILsAGai~S-P~LLl~SGIGp  268 (360)
T d1kdga1         191 GPVATYLQTALARPNFTFKTNVMVSNVVRNG-SQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGT-SRILFQSGIGP  268 (360)
T ss_dssp             HHHHTHHHHHHTCTTEEEECSCCEEEEEEET-TEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHH-HHHHHHTTBSC
T ss_pred             cccchhhhhhhcccccccccCcEEEEEEEeC-CEEEEEEEEecccCcceEEEEEECCEEEEechhHhC-hHHHHhcCCCc
Confidence            3444444444454 47999999999999988 89999999642     2  344444 9999998886 5554 222234


Q ss_pred             hHHHHH
Q 048009          308 DDFILS  313 (531)
Q Consensus       308 ~~~~~~  313 (531)
                      ++..+.
T Consensus       269 ~~~L~~  274 (360)
T d1kdga1         269 TDMIQT  274 (360)
T ss_dssp             HHHHHH
T ss_pred             hhhhHH
Confidence            444443

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.90  E-value=9.7e-09  Score=80.24  Aligned_cols=52  Identities=17%  Similarity=0.313  Sum_probs=39.8

Q ss_pred             HHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCcEEEcCeEEecCC
Q 048009          241 MAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGAQVHSSIVLSNAT  292 (531)
Q Consensus       241 ~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~~~~ad~VV~aa~  292 (531)
                      +.+.+.++++|++++++++|++|+.++++++..+..   .++++++||.||+|+|
T Consensus        67 ~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          67 AYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             HHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             hhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            334556788899999999999999877566544432   3456899999999876

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.88  E-value=5.6e-10  Score=98.17  Aligned_cols=44  Identities=32%  Similarity=0.608  Sum_probs=41.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTE   59 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~   59 (531)
                      .+|||+|||||++||+||.++++.|.+|+|+|+++.+||.|...
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~   45 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNV   45 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecc
Confidence            57999999999999999999999999999999999999988653

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.8e-08  Score=78.93  Aligned_cols=35  Identities=17%  Similarity=0.301  Sum_probs=32.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+++|||||..|+-+|..|++.|.+|+|+|++++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            36899999999999999999999999999999765

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.84  E-value=1.3e-08  Score=79.44  Aligned_cols=53  Identities=13%  Similarity=0.081  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe--CCC--cEEEcCeEEecCC
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL--ADG--AQVHSSIVLSNAT  292 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~--~~g--~~~~ad~VV~aa~  292 (531)
                      .+.+.+.+.++++|++++++++|++|+.++ +.+. |++  .+|  ++++||.|++|+|
T Consensus        68 ~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~-~g~~-v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          68 DLVKVWQKQNEYRFDNIMVNTKTVAVEPKE-DGVY-VTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             HHHHHHHHHHGGGEEEEECSCEEEEEEEET-TEEE-EEEESSSCCSSCEEESCEEECCC
T ss_pred             hHHHHHHHHHHHcCcccccCcEEEEEEEcC-CcEE-EEEEeCCCCeEEEEcCEEEEecC
Confidence            344556677788999999999999999877 4433 444  333  3699999999987

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.82  E-value=1.1e-08  Score=79.90  Aligned_cols=34  Identities=41%  Similarity=0.655  Sum_probs=32.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      .+++|||||..|+-+|..|++.|.+|+|+|+++.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            6799999999999999999999999999999765

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.82  E-value=4.8e-09  Score=96.37  Aligned_cols=65  Identities=18%  Similarity=0.157  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe-CCCc--EEEcCeEEecCChHhHHhhcCC
Q 048009          237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL-ADGA--QVHSSIVLSNATPYKTFMDLVP  302 (531)
Q Consensus       237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~-~~g~--~~~ad~VV~aa~~~~~~~~ll~  302 (531)
                      ..+.+.|.+.+++.|..+..+..+..+...+++.+. |++ .+|+  ++.||.||.|-|.++...+.++
T Consensus       103 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~g~~~~i~a~~vVgADG~~S~vR~~i~  170 (292)
T d1k0ia1         103 TEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPY-VTFERDGERLRLDCDYIAGCDGFHGISRQSIP  170 (292)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCE-EEEEETTEEEEEECSEEEECCCTTCSTGGGSC
T ss_pred             HHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceE-EEEecCCcEEEEEeCEEEECCCCCCcccceee
Confidence            467888888899999988888877776665524443 655 4554  5789999999888876665553

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.81  E-value=9e-10  Score=100.46  Aligned_cols=43  Identities=33%  Similarity=0.524  Sum_probs=39.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHc-CCcEEEEccCCCCCceeec
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARA-GLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~-G~~V~v~E~~~~~GG~~~s   58 (531)
                      .++||+|||||++||+||++|+++ |++|+|+|+++.+||.+.+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~   75 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL   75 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceee
Confidence            469999999999999999999985 9999999999999998764

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.80  E-value=9.2e-10  Score=97.28  Aligned_cols=44  Identities=39%  Similarity=0.694  Sum_probs=40.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTE   59 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~   59 (531)
                      .+|||+|||||++||+||.+|++.|++|+|+|+.+.+||.|.+.
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~   48 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNV   48 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHH
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeecc
Confidence            36999999999999999999999999999999999999987654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.79  E-value=1.8e-09  Score=95.52  Aligned_cols=45  Identities=29%  Similarity=0.442  Sum_probs=41.3

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecc
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTE   59 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~   59 (531)
                      ....+|+|||||++||+||..|+++|++|+|+|+++.+||.+...
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~   91 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQV   91 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHH
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccc
Confidence            456899999999999999999999999999999999999987543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.77  E-value=2.4e-09  Score=96.82  Aligned_cols=41  Identities=34%  Similarity=0.445  Sum_probs=36.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCcee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAA   56 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~   56 (531)
                      .+.||||||||++||+||++|+++|++|+||||+...+|.+
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~~s   45 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSS   45 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTTC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCCcc
Confidence            45799999999999999999999999999999987555543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.77  E-value=2.4e-09  Score=101.68  Aligned_cols=41  Identities=32%  Similarity=0.571  Sum_probs=38.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHH------cCCcEEEEccCCCCCceee
Q 048009           17 KWDALVIGGGHNGLTAAAYLAR------AGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~------~G~~V~v~E~~~~~GG~~~   57 (531)
                      +|||||||||+|||+||+.|++      +|++|+|+||+..+|....
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~   78 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTL   78 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCcc
Confidence            5999999999999999999998      7999999999999987654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=8.8e-10  Score=96.54  Aligned_cols=44  Identities=32%  Similarity=0.584  Sum_probs=39.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeeccc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEE   60 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~   60 (531)
                      ++|||+|||||.+|++||.+|++.|.+|+|+|++ .+||.|....
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~~~g   44 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNVG   44 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEeccc
Confidence            3699999999999999999999999999999995 6899886544

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.75  E-value=1.6e-09  Score=96.49  Aligned_cols=42  Identities=26%  Similarity=0.334  Sum_probs=38.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcC-------CcEEEEccCCCCCceeec
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAG-------LSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G-------~~V~v~E~~~~~GG~~~s   58 (531)
                      .++|+|||||+|||+||++|+++|       ++|+|||+.+.+||.++.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~   50 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRS   50 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeee
Confidence            379999999999999999999998       479999999999998643

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.74  E-value=2.3e-09  Score=94.68  Aligned_cols=42  Identities=24%  Similarity=0.248  Sum_probs=38.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHc--CCcEEEEccCCCCCceeec
Q 048009           17 KWDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~~GG~~~s   58 (531)
                      +++|+|||||+|||+||.+|+++  |++|+|||+.+.+||.+..
T Consensus         1 ~~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~   44 (230)
T d1cjca2           1 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF   44 (230)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH
T ss_pred             CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehh
Confidence            36999999999999999999886  7899999999999998653

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.73  E-value=3.3e-09  Score=93.55  Aligned_cols=42  Identities=36%  Similarity=0.548  Sum_probs=37.7

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCcee
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAA   56 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~   56 (531)
                      +++|||+|||||+|||+||.+|+++|++|+|+|+....++..
T Consensus         1 ~~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~   42 (229)
T d3lada1           1 SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (229)
T ss_dssp             CCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccc
Confidence            368999999999999999999999999999999987766553

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.70  E-value=6.1e-09  Score=93.65  Aligned_cols=45  Identities=40%  Similarity=0.708  Sum_probs=40.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIP   63 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~   63 (531)
                      ||++|||||.+|++||.++++.|.+|+|+|+. .+||.|....|.|
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-~~GGtc~n~gciP   46 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCVNVGCVP   46 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHHHTSHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCeEEeeCCcc
Confidence            89999999999999999999999999999995 5899997766554

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.69  E-value=5.3e-09  Score=89.77  Aligned_cols=42  Identities=26%  Similarity=0.619  Sum_probs=38.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCc-EEEEccCCCCCceeec
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLS-VAVLERRHVIGGAAVT   58 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~-V~v~E~~~~~GG~~~s   58 (531)
                      ..+|+|||||++||+||..|+++|++ |+||||++.+||....
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~   46 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTS   46 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHH
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhh
Confidence            57999999999999999999999985 9999999999987543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=6.3e-07  Score=69.34  Aligned_cols=33  Identities=36%  Similarity=0.521  Sum_probs=30.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      .-+++|||||..|+-.|..|++.|.+|+|++++
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            358999999999999999999999999999974

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.56  E-value=1.4e-08  Score=88.74  Aligned_cols=43  Identities=28%  Similarity=0.526  Sum_probs=38.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecc
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTE   59 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~   59 (531)
                      .++|++|||||++|++||..+++.|.+|+|+|++ .+||.|...
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c~~~   46 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLNI   46 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCccccc
Confidence            4699999999999999999999999999999996 589988654

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.55  E-value=1.6e-08  Score=88.57  Aligned_cols=41  Identities=32%  Similarity=0.576  Sum_probs=37.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      +|||+|||||++||+||.++++.|.+|+|+|+. .+||.|..
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~-~~GG~~~~   43 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLN   43 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecC-CCCcceec
Confidence            599999999999999999999999999999995 47887754

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.55  E-value=2.4e-08  Score=88.27  Aligned_cols=40  Identities=33%  Similarity=0.396  Sum_probs=35.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCce
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGA   55 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~   55 (531)
                      -+|||+|||||++||+||.++++.|++|+|+|+.+..|..
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~   41 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLG   41 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcc
Confidence            3699999999999999999999999999999997765443

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=2.2e-08  Score=84.81  Aligned_cols=40  Identities=35%  Similarity=0.724  Sum_probs=36.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      .|||+|||||.+||+||.++++.|.+|+|+|++  +||.+..
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~~   40 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILD   40 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCcccc
Confidence            489999999999999999999999999999975  6887653

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2e-08  Score=87.90  Aligned_cols=41  Identities=46%  Similarity=0.751  Sum_probs=37.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s   58 (531)
                      +|||+|||||++|++||.++++.|.+|+|+|+ ..+||.|..
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk-~~~GG~c~n   43 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTCVN   43 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCCCCcccc
Confidence            69999999999999999999999999999999 557777654

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=2.2e-08  Score=92.54  Aligned_cols=43  Identities=30%  Similarity=0.525  Sum_probs=39.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHc--CCcEEEEccCCCCCceeec
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIGGAAVT   58 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~~GG~~~s   58 (531)
                      ..+||+|||||++||+||++|+++  |++|+|+|+++.+||.+..
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL   93 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence            468999999999999999999975  9999999999999998753

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.52  E-value=1.8e-08  Score=90.64  Aligned_cols=46  Identities=30%  Similarity=0.593  Sum_probs=42.4

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeeccc
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEE   60 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~   60 (531)
                      ..+||++|||||.+|+.||..|++.|.+|+|+|+.+.+||.|....
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~G   85 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNA   85 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccccc
Confidence            4679999999999999999999999999999999999999986543

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.45  E-value=6.1e-08  Score=88.30  Aligned_cols=37  Identities=38%  Similarity=0.548  Sum_probs=34.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC-cEEEEccCCCCCc
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL-SVAVLERRHVIGG   54 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~~~GG   54 (531)
                      +||+|||||++||++|+.|+++|. +|+|+||++.++.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~   39 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRP   39 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCC
Confidence            799999999999999999999995 8999999987653

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.43  E-value=5.6e-08  Score=92.54  Aligned_cols=40  Identities=33%  Similarity=0.489  Sum_probs=35.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCce
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGA   55 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~   55 (531)
                      .+|||||||||++|+++|.+|+++|++|+|+|+.....+.
T Consensus         3 ~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~~~   42 (379)
T d2f5va1           3 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGL   42 (379)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSS
T ss_pred             CcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCCCc
Confidence            4699999999999999999999999999999997655443

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=4.1e-08  Score=85.06  Aligned_cols=44  Identities=27%  Similarity=0.348  Sum_probs=37.7

Q ss_pred             HHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChH
Q 048009          247 AREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPY  294 (531)
Q Consensus       247 ~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~  294 (531)
                      ++++|++++++++|++|+.++ .   .|+++||+++.||.||+|+|..
T Consensus        93 ~~~~gI~~~~g~~V~~id~~~-~---~V~l~dG~~i~~d~lViAtG~~  136 (213)
T d1m6ia1          93 IENGGVAVLTGKKVVQLDVRD-N---MVKLNDGSQITYEKCLIATGGT  136 (213)
T ss_dssp             STTCEEEEEETCCEEEEEGGG-T---EEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHCCeEEEeCCEEEEeeccC-c---eeeeccceeeccceEEEeeeee
Confidence            457899999999999998765 3   4889999999999999998843

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=4.2e-08  Score=83.47  Aligned_cols=40  Identities=35%  Similarity=0.462  Sum_probs=35.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCce
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGA   55 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~   55 (531)
                      ++.||+|||||++||+||.+|++.|.+|+|+|+.+..|..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~   43 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQL   43 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccc
Confidence            3579999999999999999999999999999997654433

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.40  E-value=5.6e-08  Score=86.12  Aligned_cols=37  Identities=32%  Similarity=0.454  Sum_probs=33.4

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRHV   51 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~~   51 (531)
                      +++|||+|||||+||++||.++++.|. +|+|+|+...
T Consensus         1 ~k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            368999999999999999999999984 6999999775

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.39  E-value=1e-07  Score=84.24  Aligned_cols=36  Identities=39%  Similarity=0.447  Sum_probs=32.1

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      ++.|||+|||||+||++||.++++.|. +|+|+|+..
T Consensus         1 ~~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           1 SKIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CCSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            357999999999999999999999875 699999853

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.35  E-value=7.5e-08  Score=81.95  Aligned_cols=38  Identities=29%  Similarity=0.313  Sum_probs=34.3

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ..++||+|||||.+||+||.+|++.|.+|+|+|+....
T Consensus         3 ~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~   40 (192)
T d1vdca1           3 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAN   40 (192)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBT
T ss_pred             cccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeeccc
Confidence            34699999999999999999999999999999986543

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.35  E-value=1.5e-07  Score=88.71  Aligned_cols=42  Identities=40%  Similarity=0.517  Sum_probs=36.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHH----cCCcEEEEccCCCCCceee
Q 048009           16 KKWDALVIGGGHNGLTAAAYLAR----AGLSVAVLERRHVIGGAAV   57 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~----~G~~V~v~E~~~~~GG~~~   57 (531)
                      .++||+|||||++||+||+.|++    +|.+|+|+||.+..||.+.
T Consensus        20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s~   65 (356)
T d1jnra2          20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAV   65 (356)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTT
T ss_pred             EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChhH
Confidence            36999999999999999999986    6999999999888776553

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.33  E-value=1.3e-07  Score=89.20  Aligned_cols=38  Identities=32%  Similarity=0.552  Sum_probs=33.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHH-----HcCCcEEEEccCCCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLA-----RAGLSVAVLERRHVIG   53 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~-----~~G~~V~v~E~~~~~G   53 (531)
                      ..|||+|||||++||++|..|+     ++|++|+||||++.+.
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            4599999999999999999997     4699999999987653

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.32  E-value=5.6e-07  Score=76.84  Aligned_cols=50  Identities=10%  Similarity=0.203  Sum_probs=36.7

Q ss_pred             HHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc--EEEcCeEEecCChHh
Q 048009          245 SAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA--QVHSSIVLSNATPYK  295 (531)
Q Consensus       245 ~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~--~~~ad~VV~aa~~~~  295 (531)
                      +.++++|++++++++|++|+.++ ..++.-.+.+|+  ++.+|.+|+++|...
T Consensus        64 ~~l~~~gi~v~~~~~V~~i~~~~-~~v~~~~~~~g~~~~~~~D~li~a~G~~~  115 (198)
T d1nhpa1          64 EKMESRGVNVFSNTEITAIQPKE-HQVTVKDLVSGEERVENYDKLIISPGAVP  115 (198)
T ss_dssp             HHHHHTTCEEEETEEEEEEETTT-TEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             HHHHHCCcEEEEeeceeeEeecc-ccceeeecccccccccccceeeEeeccee
Confidence            34567899999999999999776 544322244554  578999999998654

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.26  E-value=3e-07  Score=87.57  Aligned_cols=49  Identities=35%  Similarity=0.523  Sum_probs=39.5

Q ss_pred             ccccccccccccCCCCcEEEECCChhHHHHHHHHHHcC-CcEEEEccCCC
Q 048009            3 RRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAG-LSVAVLERRHV   51 (531)
Q Consensus         3 ~~~~~~~~~~~~~~~~dvvIIGaGiaGL~aA~~L~~~G-~~V~v~E~~~~   51 (531)
                      +.++...+.....++||+||||||.+|+..|.+|++.| ++|+|+|+...
T Consensus        10 ~~~~~~~p~~~~~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          10 QSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             GGGSBCCGGGTTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             cccccCCcccccCCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            33444444444455799999999999999999999998 79999999864

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.12  E-value=1.7e-07  Score=83.13  Aligned_cols=33  Identities=27%  Similarity=0.227  Sum_probs=29.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|+|||||++||++|++|+++|++|+|+|+..
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~   33 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVK   33 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEeeee
Confidence            579999999999999999999999988887743

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.09  E-value=3.9e-07  Score=80.01  Aligned_cols=43  Identities=35%  Similarity=0.512  Sum_probs=36.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHcC---CcEEEEccCCCCCceeecccc
Q 048009           18 WDALVIGGGHNGLTAAAYLARAG---LSVAVLERRHVIGGAAVTEEL   61 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G---~~V~v~E~~~~~GG~~~s~~~   61 (531)
                      .||+|||||++|++||.++++.|   ++|+|+|+ ..+||.|....|
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~cln~Gc   47 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAVLDDC   47 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHHHHTSH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCceeecccc
Confidence            58999999999999999998765   67999998 568998876543

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.07  E-value=9.1e-07  Score=84.02  Aligned_cols=39  Identities=36%  Similarity=0.527  Sum_probs=34.4

Q ss_pred             ccCCCCcEEEECCChhHHHHHHHHHHcC-CcEEEEccCCC
Q 048009           13 LKEKKWDALVIGGGHNGLTAAAYLARAG-LSVAVLERRHV   51 (531)
Q Consensus        13 ~~~~~~dvvIIGaGiaGL~aA~~L~~~G-~~V~v~E~~~~   51 (531)
                      ...++||+||||||.+|+..|.+|++.+ ++|+|+|+.+.
T Consensus        13 ~~~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          13 VSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             TTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             ccCCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            3355799999999999999999999986 89999999754

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.80  E-value=4.1e-06  Score=78.16  Aligned_cols=35  Identities=37%  Similarity=0.616  Sum_probs=32.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..||+||||||.+|+..|.+|++. ++|+|+|+.+.
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            359999999999999999999987 99999999864

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=3.2e-05  Score=56.14  Aligned_cols=37  Identities=22%  Similarity=0.420  Sum_probs=33.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG   53 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~G   53 (531)
                      ..+|+|||.|.+|+++|..|.++|.+|+++|.+...-
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~   41 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP   41 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCT
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCch
Confidence            3579999999999999999999999999999976533

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.59  E-value=2.3e-05  Score=65.39  Aligned_cols=34  Identities=35%  Similarity=0.553  Sum_probs=30.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC--cEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL--SVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~~   51 (531)
                      .+|+|||||.+|+.+|..|++.+.  +|+|+|+++.
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            589999999999999999999874  7999999764

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.31  E-value=7.4e-05  Score=62.00  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=32.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..+|+|||||..|..+|.+|+++|++|+|++|+..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            36899999999999999999999999999999865

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.31  E-value=7.3e-05  Score=61.14  Aligned_cols=32  Identities=25%  Similarity=0.554  Sum_probs=29.1

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      +|+|||||.+|+.+|..|++ +.+|+|+|+.+.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~   33 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPV   33 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccc
Confidence            79999999999999999975 789999999765

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.30  E-value=9.6e-05  Score=61.49  Aligned_cols=33  Identities=36%  Similarity=0.376  Sum_probs=31.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+|+|||+|..|++.|..|+++|++|.++++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            579999999999999999999999999999964

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.29  E-value=7.1e-05  Score=62.36  Aligned_cols=36  Identities=17%  Similarity=0.203  Sum_probs=32.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      .-||+|||||.+|+-+|..|++.|.+|+|++..+..
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            368999999999999999999999999999887653

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.0002  Score=58.36  Aligned_cols=36  Identities=22%  Similarity=0.096  Sum_probs=33.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG   53 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~G   53 (531)
                      ++|+|||+|..|...|..|++.|++|+++.|++...
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~   36 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPY   36 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHh
Confidence            589999999999999999999999999999987633

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.11  E-value=0.00011  Score=61.20  Aligned_cols=43  Identities=9%  Similarity=0.067  Sum_probs=35.3

Q ss_pred             HcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          249 EAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       249 ~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      ..+++++++++|++|..+. .   .+.+.+|+++.+|.||+|+|...
T Consensus        67 ~~~i~~~~~~~v~~i~~~~-~---~~~~~~g~~~~~D~vi~a~G~~p  109 (183)
T d1d7ya1          67 APEVEWLLGVTAQSFDPQA-H---TVALSDGRTLPYGTLVLATGAAP  109 (183)
T ss_dssp             STTCEEEETCCEEEEETTT-T---EEEETTSCEEECSEEEECCCEEE
T ss_pred             cCCeEEEEecccccccccc-c---eeEecCCcEeeeeeEEEEEEEEc
Confidence            3468899999999998765 3   37789999999999999998543

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.0076  Score=45.80  Aligned_cols=35  Identities=31%  Similarity=0.581  Sum_probs=31.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...+|+|||+|-+.+-.|..|++...+|+|+-|++
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            45799999999999999999999999999997754

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00012  Score=68.53  Aligned_cols=38  Identities=26%  Similarity=0.447  Sum_probs=29.9

Q ss_pred             CCCCCCCCeeecCCCCCCC--CCcCCc--hHHHHHHHHHHHh
Q 048009          489 NYRTPLQGLYMCGSGTHPG--GGVMGA--PGRNAAGIVLQDL  526 (531)
Q Consensus       489 ~~~t~~~~ly~aG~~~~~g--~g~~~~--sg~~aa~~i~~~~  526 (531)
                      ..++|++||||||++|+++  ++++||  ||++||++|++++
T Consensus       406 ~~~~~~~~l~fAGe~t~~~~~g~~~GA~~SG~~aA~~Il~~~  447 (449)
T d2dw4a2         406 GAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF  447 (449)
T ss_dssp             ----CCCCEEECSGGGCTTSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCCCEEEEcCCcCCCCceehHHHHHHHHHHHHHHHHHh
Confidence            5678999999999999775  457787  9999999999876

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.0004  Score=57.77  Aligned_cols=33  Identities=30%  Similarity=0.429  Sum_probs=31.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+|+|||+|..|..-|+.++++|++|+++|+++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            589999999999999999999999999999964

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.82  E-value=0.00058  Score=54.22  Aligned_cols=34  Identities=26%  Similarity=0.424  Sum_probs=32.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      +..+|+|||+|.+|+.|+..+...|-+|+++|.+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            4589999999999999999999999999999985

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.75  E-value=0.00056  Score=57.56  Aligned_cols=33  Identities=21%  Similarity=0.232  Sum_probs=31.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|.|||.|..||+.|..|+++|++|+.+|.+.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            579999999999999999999999999999864

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.74  E-value=0.00052  Score=56.78  Aligned_cols=33  Identities=24%  Similarity=0.211  Sum_probs=31.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+|+|||+|..|..-|..++.+|++|+++|.++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999964

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.74  E-value=0.00051  Score=53.31  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=31.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ++|+|+|+|-.|...|..|.++|++|+|+|+++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            5799999999999999999999999999999764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.72  E-value=0.00085  Score=54.08  Aligned_cols=36  Identities=33%  Similarity=0.337  Sum_probs=33.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      +..+|+|||||.+|+.||......|-+|+++|.+..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            357999999999999999999999999999999764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.72  E-value=0.00085  Score=53.75  Aligned_cols=36  Identities=19%  Similarity=0.210  Sum_probs=31.2

Q ss_pred             CcEEEE--CCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009           18 WDALVI--GGGHNGLTAAAYLARAGLSVAVLERRHVIG   53 (531)
Q Consensus        18 ~dvvII--GaGiaGL~aA~~L~~~G~~V~v~E~~~~~G   53 (531)
                      ..|+||  |||..|+.+|..|+++|.+|+|+|+.++++
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~   77 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLAN   77 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTT
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            445555  999999999999999999999999987653

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.58  E-value=0.0018  Score=51.31  Aligned_cols=40  Identities=25%  Similarity=0.376  Sum_probs=32.6

Q ss_pred             ccccCCCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           11 SALKEKKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        11 ~~~~~~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      .+.+...-+|+|||||-+|+=||..|.+.|. +|+++++++
T Consensus        39 ~~~p~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          39 SPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CccccCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            3444445689999999999999999999985 588998864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.43  E-value=0.0013  Score=53.16  Aligned_cols=33  Identities=27%  Similarity=0.285  Sum_probs=30.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|.|||.|..|.+-|..|+++|++|+++++++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            479999999999999999999999999999974

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.38  E-value=0.00075  Score=55.87  Aligned_cols=34  Identities=26%  Similarity=0.274  Sum_probs=31.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +.+|+|||+|.-|.+.|..|++.|++|+|+.+++
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            3579999999999999999999999999999864

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.27  E-value=0.0017  Score=50.37  Aligned_cols=33  Identities=27%  Similarity=0.267  Sum_probs=31.0

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      +++|||.|-.|...|..|.+.|++|+++|.++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            689999999999999999999999999999753

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.23  E-value=0.0025  Score=50.46  Aligned_cols=38  Identities=24%  Similarity=0.257  Sum_probs=32.8

Q ss_pred             ccCCCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           13 LKEKKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        13 ~~~~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      +..++.+|+|||+|-.|.++|+.|+..++ +++|+|.+.
T Consensus         3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           3 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            33467999999999999999999999885 799999765

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.18  E-value=0.0019  Score=53.00  Aligned_cols=31  Identities=19%  Similarity=0.252  Sum_probs=29.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEcc
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLER   48 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~   48 (531)
                      ++|+|||+|.-|.+.|..|++.|++|+|+.|
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            5799999999999999999999999999966

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.16  E-value=0.0023  Score=50.11  Aligned_cols=35  Identities=17%  Similarity=0.315  Sum_probs=31.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcC--CcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAG--LSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G--~~V~v~E~~~   50 (531)
                      .+.+|+|||+|-.|.++|+.|+.+|  .+|.++|.+.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            3579999999999999999999998  5799999864

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.14  E-value=0.0032  Score=49.94  Aligned_cols=36  Identities=25%  Similarity=0.472  Sum_probs=32.6

Q ss_pred             CCCCcEEEEC-CChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           15 EKKWDALVIG-GGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        15 ~~~~dvvIIG-aGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ....+|+||| .|..|.+-|..|+++|++|.+++++.
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            3457999999 69999999999999999999999865

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.77  E-value=0.0069  Score=47.97  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=31.7

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCC--cEEEEccC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGL--SVAVLERR   49 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~   49 (531)
                      .++.+|+|||+|..|.++|+.|..+|.  ++.|+|.+
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            446899999999999999999999986  79999986

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.75  E-value=0.0043  Score=49.69  Aligned_cols=33  Identities=30%  Similarity=0.339  Sum_probs=30.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|.|||-|..|...|..|+++|++|.++++++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            479999999999999999999999999999864

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.59  E-value=0.0058  Score=48.94  Aligned_cols=33  Identities=30%  Similarity=0.380  Sum_probs=30.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .+|.|||-|..|..-|..|.++|++|.+++++.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            479999999999999999999999999999863

>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.56  E-value=0.0088  Score=43.89  Aligned_cols=63  Identities=13%  Similarity=0.038  Sum_probs=44.3

Q ss_pred             CCeEEEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCcee
Q 048009          379 RPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSII  447 (531)
Q Consensus       379 ~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~  447 (531)
                      ...+-+++.|.+.|.++|+|+..+++++..... .....++    .+++.+.++++|++++ +++...+
T Consensus        33 ~~~lg~~f~S~~fp~r~p~~~~llrv~~Gg~~~-~~~~~~~----d~~l~~~a~~dL~~~l-gi~~~P~   95 (108)
T d2ivda2          33 RRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQ-PGLVEQD----EDALAALAREELKALA-GVTARPS   95 (108)
T ss_dssp             CSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTC-GGGGGSC----HHHHHHHHHHHHHHHH-CCCSCCS
T ss_pred             CeEEEEEEEccccccccCCCCEEEEEEeCCCCC-cccccCC----HHHHHHHHHHHHHHHh-CCCCCCc
Confidence            356678899999999999999999998753211 1001233    3889999999999987 4554333

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.52  E-value=0.0073  Score=49.10  Aligned_cols=34  Identities=21%  Similarity=0.239  Sum_probs=31.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +.+|.|||-|..|..-|..|.++|++|.++++++
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            4689999999999999999999999999999975

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.45  E-value=0.0076  Score=49.12  Aligned_cols=33  Identities=36%  Similarity=0.438  Sum_probs=31.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|.|||-|..|..-|..|.++|++|.+++++.
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            689999999999999999999999999999853

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.44  E-value=0.0053  Score=51.15  Aligned_cols=33  Identities=30%  Similarity=0.367  Sum_probs=30.0

Q ss_pred             CcEEEE-CCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVI-GGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvII-GaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|+|| |+|--|.+.|..|+++|++|+|..|++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            479999 679999999999999999999998864

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.27  E-value=0.0093  Score=46.70  Aligned_cols=35  Identities=20%  Similarity=0.368  Sum_probs=31.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      ...+|+|||+|-.|.++|+.|+.+|.  ++.|+|..+
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            45789999999999999999999875  799999754

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.18  E-value=0.0066  Score=50.42  Aligned_cols=33  Identities=21%  Similarity=0.262  Sum_probs=29.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ++|+|||.|-.||..|..|+ +|++|+.+|-++.
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~   33 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS   33 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence            57999999999999999887 5999999998753

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.96  E-value=0.0083  Score=47.29  Aligned_cols=34  Identities=32%  Similarity=0.438  Sum_probs=31.0

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEcc
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLER   48 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~   48 (531)
                      -...+|+|||||-.|+.-|..|.+.|.+|+|+..
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            4568999999999999999999999999999943

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.88  E-value=0.012  Score=46.38  Aligned_cols=34  Identities=24%  Similarity=0.156  Sum_probs=31.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ++|.|||.|..|.+.|..|+++|++|+++.+.+.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            4799999999999999999999999999987653

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.78  E-value=0.013  Score=46.37  Aligned_cols=36  Identities=22%  Similarity=0.384  Sum_probs=31.6

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      +.+.+|+|||+|-.|-++|+.|..+|.  ++.|+|.+.
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            456789999999999999999999975  799999763

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.60  E-value=0.018  Score=42.65  Aligned_cols=35  Identities=29%  Similarity=0.430  Sum_probs=31.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...+|+|||+|-.|..-|..|.+.|.+|+|+....
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            35799999999999999999999999999997643

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.54  E-value=0.021  Score=44.21  Aligned_cols=34  Identities=21%  Similarity=0.248  Sum_probs=29.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC--cEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL--SVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~~   51 (531)
                      .+|+|||+|-.|.++|+.|..++.  ++.|+|....
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            489999999999999999999975  7999997653

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.54  E-value=0.025  Score=41.49  Aligned_cols=37  Identities=22%  Similarity=0.304  Sum_probs=33.5

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ...++|.|||||--|...|....+.|++|.+++.++.
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            3457999999999999999999999999999998765

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=94.48  E-value=0.02  Score=44.46  Aligned_cols=33  Identities=30%  Similarity=0.350  Sum_probs=29.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHcC--CcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAG--LSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G--~~V~v~E~~~   50 (531)
                      ++|+|||+|-.|.+.|+.|+..|  .++.|+|.++
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            47999999999999999999997  4799999875

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.46  E-value=0.017  Score=42.35  Aligned_cols=35  Identities=14%  Similarity=0.032  Sum_probs=30.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...+|+|||+|.+|+-.|..|++.+.+|+++-+++
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            35899999999999999999999988877766654

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.33  E-value=0.021  Score=44.17  Aligned_cols=33  Identities=27%  Similarity=0.311  Sum_probs=29.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      .+|+|||+|..|.++|+.|..+|.  ++.|+|.+.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            479999999999999999999985  799999764

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.33  E-value=0.02  Score=44.49  Aligned_cols=33  Identities=21%  Similarity=0.287  Sum_probs=29.2

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      .+|+|||+|-.|.++|+.|..+|.  ++.++|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            579999999999999999999874  799999753

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.023  Score=43.00  Aligned_cols=36  Identities=39%  Similarity=0.380  Sum_probs=33.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ...+|+|||+|-+.+-.|..|++...+|+|+-+++.
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~   64 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE   64 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             CCceEEEEeCCHHHHHHHHhhhccCCceEEEecccc
Confidence            458999999999999999999999999999998764

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.09  E-value=0.025  Score=43.75  Aligned_cols=33  Identities=30%  Similarity=0.432  Sum_probs=29.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      .+|+|||+|-.|.++|+.|+.++. +++++|...
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            479999999999999999999885 799999754

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.08  E-value=0.022  Score=44.00  Aligned_cols=33  Identities=18%  Similarity=0.116  Sum_probs=29.2

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      ++|+|||+|-.|.++|+.|+.+|.  ++.|+|.+.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            589999999999999999999874  699999754

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.01  E-value=0.02  Score=44.42  Aligned_cols=33  Identities=27%  Similarity=0.477  Sum_probs=29.1

Q ss_pred             CcEEEECC-ChhHHHHHHHHHHcC--CcEEEEccCC
Q 048009           18 WDALVIGG-GHNGLTAAAYLARAG--LSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGa-GiaGL~aA~~L~~~G--~~V~v~E~~~   50 (531)
                      ++|+|||| |..|.++|+.|+.+|  .++.|+|...
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            47999996 999999999999998  4899998864

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.92  E-value=0.03  Score=44.92  Aligned_cols=34  Identities=21%  Similarity=0.207  Sum_probs=31.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..+|+|||+|-++-++++.|.+.|.+|+|+-|+.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            4789999999999999999999999999998864

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.90  E-value=0.035  Score=43.28  Aligned_cols=34  Identities=21%  Similarity=0.345  Sum_probs=29.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      +.+|.|||+|-.|.++|+.|.+++. ++.|+|.+.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            4699999999999999999998874 699999854

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.86  E-value=0.034  Score=42.18  Aligned_cols=37  Identities=30%  Similarity=0.576  Sum_probs=33.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI   52 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~   52 (531)
                      ...+|+|||+|-+.+-.|..|++.-.+|+|+-|++.+
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   69 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF   69 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccc
Confidence            4689999999999999999999999999999998764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.77  E-value=0.022  Score=45.77  Aligned_cols=34  Identities=29%  Similarity=0.285  Sum_probs=30.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .-.|+|+|+|..|+.++..+...|.+|+++|+++
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            3579999999999999999999999999999875

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.73  E-value=0.011  Score=51.91  Aligned_cols=46  Identities=15%  Similarity=0.178  Sum_probs=38.7

Q ss_pred             HHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          248 REAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       248 ~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      +..++++++++.|..|...+ +.+. |++.||+.+.+|++++++++..
T Consensus       221 ~~~~~~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~~d~~~~~~~~~~  266 (347)
T d1b5qa1         221 KIVDPRLQLNKVVREIKYSP-GGVT-VKTEDNSVYSADYVMVSASLGV  266 (347)
T ss_dssp             CBCCTTEESSCCEEEEEECS-SCEE-EEETTSCEEEESEEEECSCHHH
T ss_pred             hhcccccccccccccccccC-ccEE-EEECCCCEEEcCEEEeecCHHH
Confidence            45578899999999999887 6654 8999999999999999877655

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.67  E-value=0.026  Score=44.30  Aligned_cols=33  Identities=12%  Similarity=0.043  Sum_probs=30.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|.|||+|..|.+-|..|.+.|++|+|++++.
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            479999999999999999999999999999864

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.61  E-value=0.043  Score=43.81  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=31.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      ...+|+|||+|-++-++++.|.+.|. +|+|+-|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            35789999999999999999999996 799998864

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.45  E-value=0.034  Score=42.84  Aligned_cols=33  Identities=18%  Similarity=0.252  Sum_probs=29.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHcC--CcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAG--LSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G--~~V~v~E~~~   50 (531)
                      ++|+|||+|-.|.++|+.|+.++  .++.++|.+.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            47999999999999999999887  4799999764

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.40  E-value=0.04  Score=44.20  Aligned_cols=32  Identities=25%  Similarity=0.382  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      +|.|||.|..|.+-|..|.+.|+  +|..+|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            69999999999999999999996  678889864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.37  E-value=0.028  Score=45.17  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=30.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      .-.|+|+|+|..|+.++..+...|. +|+++|+++
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            3579999999999999999999997 699999875

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.36  E-value=0.002  Score=55.38  Aligned_cols=38  Identities=18%  Similarity=0.195  Sum_probs=34.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG   54 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG   54 (531)
                      ..+|+|||||..|+-+|..|++.|.+|+|+++++.++-
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~~  217 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIAW  217 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCCT
T ss_pred             CCceeEecCchHHHHHHHHHHhcCCceEEEEecccccc
Confidence            46799999999999999999999999999999987643

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.21  E-value=0.037  Score=44.29  Aligned_cols=36  Identities=17%  Similarity=0.124  Sum_probs=31.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      +.-.|+|+|+|..|+.++..+...|.+|+++++++.
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            346799999999999999888888999999999764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.17  E-value=0.032  Score=44.58  Aligned_cols=34  Identities=26%  Similarity=0.264  Sum_probs=30.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .-.|+|+|+|..|+.++..+...|.+|+++++++
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            4579999999999999999988999999998864

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.13  E-value=0.05  Score=38.61  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=31.6

Q ss_pred             CCCcEEEECCChhHHHH-HHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTA-AAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~a-A~~L~~~G~~V~v~E~~~   50 (531)
                      ...+|-+||-|=+|+++ |..|.++|++|+-.|...
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            46789999999999999 999999999999999864

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.04  E-value=0.045  Score=45.37  Aligned_cols=36  Identities=33%  Similarity=0.435  Sum_probs=31.9

Q ss_pred             CCCCcEEEECC-ChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           15 EKKWDALVIGG-GHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        15 ~~~~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      |.+.+|+|+|| |..|...+.+|.++|++|+++-|++
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            34678999996 9999999999999999999998864

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.79  E-value=0.046  Score=42.24  Aligned_cols=32  Identities=22%  Similarity=0.376  Sum_probs=28.3

Q ss_pred             cEEEECC-ChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009           19 DALVIGG-GHNGLTAAAYLARAGL--SVAVLERRH   50 (531)
Q Consensus        19 dvvIIGa-GiaGL~aA~~L~~~G~--~V~v~E~~~   50 (531)
                      +|+|||| |..|.++|+.|+.+|.  ++.++|.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            7999996 9999999999999985  599999864

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.62  E-value=0.064  Score=42.01  Aligned_cols=32  Identities=19%  Similarity=0.233  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .|+|+|.|-.|...+..|.+.|++|+|+|..+
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            59999999999999999999999999999865

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=92.55  E-value=0.054  Score=42.39  Aligned_cols=33  Identities=21%  Similarity=0.420  Sum_probs=29.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHcC-CcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAG-LSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G-~~V~v~E~~~   50 (531)
                      ++|.|||+|..|-+-|..|.+.| ++|.+++|++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            47999999999999999988887 8999999974

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.51  E-value=0.035  Score=44.09  Aligned_cols=27  Identities=33%  Similarity=0.500  Sum_probs=24.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcE
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSV   43 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V   43 (531)
                      ..+|+|||||..|+-+|..|++.|.++
T Consensus        29 gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          29 GNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            468999999999999999999999653

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.39  E-value=0.1  Score=38.24  Aligned_cols=36  Identities=19%  Similarity=0.297  Sum_probs=31.9

Q ss_pred             CCCcEEEECCC-----------hhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           16 KKWDALVIGGG-----------HNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaG-----------iaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ...+|+|||+|           -++..|+..|++.|++++++--++.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            35789999998           4789999999999999999999875

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=92.09  E-value=0.02  Score=51.26  Aligned_cols=63  Identities=17%  Similarity=0.136  Sum_probs=45.9

Q ss_pred             cccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCc----eeEEEeC-----CCcEEEcCeEEecCChHh
Q 048009          231 YVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGR----VNGVQLA-----DGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       231 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~----~~~V~~~-----~g~~~~ad~VV~aa~~~~  295 (531)
                      .+++|++.+.+++.+.+.  +++|+++++|++|..+.++.    ...|...     +++.+.+|.||+|++...
T Consensus       225 ~~~~g~~~l~~~l~~~l~--~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~  296 (373)
T d1seza1         225 SFLGGMQTLTDAICKDLR--EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCD  296 (373)
T ss_dssp             EETTCTHHHHHHHHTTSC--TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHH
T ss_pred             eecccchHHHHHHHHHhc--cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHH
Confidence            789999999999987663  67899999999998865221    1223322     345789999999876544

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.01  E-value=0.11  Score=38.49  Aligned_cols=37  Identities=22%  Similarity=0.326  Sum_probs=32.6

Q ss_pred             CCCCcEEEECCCh-----------hHHHHHHHHHHcCCcEEEEccCCC
Q 048009           15 EKKWDALVIGGGH-----------NGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        15 ~~~~dvvIIGaGi-----------aGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      +...+|+|||+|.           ++..|+..|++.|++++++-.++.
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            3457899999986           789999999999999999999875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=91.25  E-value=0.088  Score=41.93  Aligned_cols=35  Identities=17%  Similarity=0.122  Sum_probs=30.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +.-.|+|+|+|..|+.++..+...|.+|++++.++
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            34679999999999999999988999998998864

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=91.18  E-value=0.069  Score=43.25  Aligned_cols=34  Identities=21%  Similarity=0.258  Sum_probs=30.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      .-.|+|+|+|..|+.++..+...|. +|+++|+++
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCEEEEECCCccchhheeccccccccccccccccc
Confidence            3579999999999999999999996 799999865

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.99  E-value=0.18  Score=39.62  Aligned_cols=46  Identities=11%  Similarity=0.083  Sum_probs=33.4

Q ss_pred             HHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC-cEEEcCeEEecCC
Q 048009          243 IGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG-AQVHSSIVLSNAT  292 (531)
Q Consensus       243 l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g-~~~~ad~VV~aa~  292 (531)
                      +...++..|++++.+++|.+|..+  |..  +...+. +++.||.||+|+|
T Consensus       114 ~~~~~~~~gv~~~~~~~v~~i~~~--gv~--~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         114 HRTTLLSRGVKMIPGVSYQKIDDD--GLH--VVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHHTTCEEECSCEEEEEETT--EEE--EEETTEEEEECCSEEEECCC
T ss_pred             HHHHHhhCCeEEEeeeEEEEEcCC--CCE--EecCCeEEEEECCEEEECCC
Confidence            455678899999999999998632  322  333332 2589999999987

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.92  E-value=0.12  Score=39.90  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=27.5

Q ss_pred             CcEEEEC-CChhHHHHHHHHHHc---CCcEEEEccCC
Q 048009           18 WDALVIG-GGHNGLTAAAYLARA---GLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIG-aGiaGL~aA~~L~~~---G~~V~v~E~~~   50 (531)
                      ++|+||| +|..|-+.|+.|+.+   +.++.++|..+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            5899999 599999999998643   46899999754

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=90.75  E-value=0.14  Score=41.26  Aligned_cols=34  Identities=21%  Similarity=0.213  Sum_probs=30.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      .+|+|||||.+|+.+|..|++.|.+|+|++.++.
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~   37 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDE   37 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecc
Confidence            5699999999999999999999999888887654

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=90.70  E-value=0.12  Score=39.61  Aligned_cols=30  Identities=23%  Similarity=0.365  Sum_probs=27.0

Q ss_pred             cEEEEC-CChhHHHHHHHHHHcCC--cEEEEcc
Q 048009           19 DALVIG-GGHNGLTAAAYLARAGL--SVAVLER   48 (531)
Q Consensus        19 dvvIIG-aGiaGL~aA~~L~~~G~--~V~v~E~   48 (531)
                      +|.||| +|..|-++|+.|..++.  ++.++|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            799999 69999999999999975  6889885

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=90.67  E-value=0.096  Score=41.96  Aligned_cols=35  Identities=26%  Similarity=0.211  Sum_probs=30.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      +.-.|+|+|+|..|+.++..+...|. +|++++.++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            34679999999999999999998896 799999864

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.58  E-value=0.12  Score=41.06  Aligned_cols=35  Identities=23%  Similarity=0.220  Sum_probs=30.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +.-.|+|+|+|..|+.++..+...|.+|.+++.++
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            34579999999999999999999999999998754

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=90.35  E-value=0.16  Score=44.74  Aligned_cols=36  Identities=33%  Similarity=0.360  Sum_probs=31.8

Q ss_pred             CCCcEEEECC-ChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           16 KKWDALVIGG-GHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ++.+|+|+|| |..|...+.+|.++|++|+++-|+..
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            3567999997 99999999999999999999988543

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=90.34  E-value=0.16  Score=44.48  Aligned_cols=35  Identities=26%  Similarity=0.264  Sum_probs=32.1

Q ss_pred             CCcEEEECC-ChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGG-GHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      +.+|+|+|| |..|-..+..|.++|++|.++.|+..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            578999998 99999999999999999999998653

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.05  E-value=0.14  Score=41.09  Aligned_cols=34  Identities=21%  Similarity=0.200  Sum_probs=30.2

Q ss_pred             CcEEEECCChhHHHHHHHHHHcC-CcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAG-LSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G-~~V~v~E~~~~   51 (531)
                      --|+|+|+|..||.+...+...| .+|.++|.++.
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            44999999999999999999998 57999998753

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=89.97  E-value=0.11  Score=41.37  Aligned_cols=35  Identities=17%  Similarity=0.233  Sum_probs=31.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...+|+|+|+|-++-++++.|.+.+.+|+|+-|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            34689999999999999999999888999999874

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.82  E-value=0.23  Score=39.10  Aligned_cols=47  Identities=13%  Similarity=0.090  Sum_probs=35.4

Q ss_pred             HHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009          244 GSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK  295 (531)
Q Consensus       244 ~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~  295 (531)
                      .+.+++.|++++++++|+.+....  +   +.+.+++++.+|.+|+|+|...
T Consensus        59 ~~~~~~~~v~~~~~~~v~~i~~~~--~---~~~~~~~~i~~D~li~a~G~~~  105 (167)
T d1xhca1          59 LDWYRKRGIEIRLAEEAKLIDRGR--K---VVITEKGEVPYDTLVLATGAPN  105 (167)
T ss_dssp             HHHHHHHTEEEECSCCEEEEETTT--T---EEEESSCEEECSEEEECCCEEC
T ss_pred             HHHHHhccceeeeecccccccccc--c---cccccccccccceeEEEEEecC
Confidence            344567799999999999997543  2   3455666799999999988543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=89.71  E-value=0.18  Score=39.59  Aligned_cols=34  Identities=35%  Similarity=0.489  Sum_probs=30.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERR   49 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~   49 (531)
                      ...+|+|||+|-.|-..|..|.++|. +|+|+-|+
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            46789999999999999999999997 59999886

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=89.60  E-value=0.19  Score=40.46  Aligned_cols=35  Identities=23%  Similarity=0.334  Sum_probs=31.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~~   51 (531)
                      ..+|+|||+|-+|-++++.|.+.|. +++|+.|+..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            4789999999999999999999986 6999998754

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.59  E-value=0.28  Score=33.89  Aligned_cols=33  Identities=21%  Similarity=0.107  Sum_probs=28.7

Q ss_pred             CcEEEECCChhHHHH-HHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTA-AAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~a-A~~L~~~G~~V~v~E~~~   50 (531)
                      ++|=+||-|=+|+++ |..|.++|++|.-.|+..
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~   35 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE   35 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            678899998899977 888889999999999865

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=89.52  E-value=0.16  Score=40.59  Aligned_cols=35  Identities=23%  Similarity=0.186  Sum_probs=30.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~~   51 (531)
                      .-.|+|+|+|..|+.++..+...|. +|++.|.++.
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            3569999999999999999999997 5778888653

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.44  E-value=0.18  Score=45.83  Aligned_cols=35  Identities=17%  Similarity=0.207  Sum_probs=31.6

Q ss_pred             CCCcEEEECC-ChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGG-GHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +.++|+|+|| |..|...+..|.++|++|+++++..
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            4689999995 9999999999999999999998754

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.32  E-value=0.14  Score=40.99  Aligned_cols=33  Identities=21%  Similarity=0.344  Sum_probs=29.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      ...+|+|||+|-++-++++.|.+.| +|.|+-|+
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            3578999999999999999998877 89999885

>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=89.11  E-value=0.11  Score=38.06  Aligned_cols=55  Identities=9%  Similarity=0.045  Sum_probs=40.3

Q ss_pred             CeEEEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhC
Q 048009          380 PIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYA  439 (531)
Q Consensus       380 ~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~  439 (531)
                      ..+-+++.|.+.|.++|+|+..+++++....+. ....++    .+++.+.++++|++++
T Consensus        38 ~~lg~~f~S~~fp~r~p~~~~ll~~~~Gg~~~~-~~~~~~----d~~l~~~a~~dl~~~l   92 (112)
T d1seza2          38 KTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNR-ELAKAS----RTELKEIVTSDLKQLL   92 (112)
T ss_dssp             CSSEEEEHHHHCGGGSCTTEEEEEEEEESTTCG-GGTTCC----HHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEecccCCCcCCCCcEEEEEEECCCCCc-ccccCC----HHHHHHHHHHHHHHHh
Confidence            456788889999999999999999987532211 101233    3889999999999986

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.05  E-value=0.14  Score=41.74  Aligned_cols=35  Identities=31%  Similarity=0.241  Sum_probs=29.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      +.-.|+|+|+|..|+.++..+...|. +|++++.++
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            34589999999999999999988876 688888764

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=89.01  E-value=0.49  Score=35.17  Aligned_cols=49  Identities=14%  Similarity=0.296  Sum_probs=37.5

Q ss_pred             HHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCC---Cc--EEEcCeEEecCC
Q 048009          243 IGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLAD---GA--QVHSSIVLSNAT  292 (531)
Q Consensus       243 l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~---g~--~~~ad~VV~aa~  292 (531)
                      +.+.+.++ ++++++|++|.+|.-++ +++.+|++.|   |+  ++.+|.|.++.|
T Consensus        71 ~~~~~~~~~~I~v~~~~~v~~i~G~~-~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          71 LQDKLRSLKNVDIILNAQTTEVKGDG-SKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             HHHHHHTCTTEEEESSEEEEEEEESS-SSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             cccccccccceeEEcCcceEEEEccc-cceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            44445554 49999999999999876 6788888754   43  688999988766

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.84  E-value=0.086  Score=39.60  Aligned_cols=40  Identities=20%  Similarity=0.343  Sum_probs=31.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHH-cCCc-EEEEccCCCCCce
Q 048009           16 KKWDALVIGGGHNGLTAAAYLAR-AGLS-VAVLERRHVIGGA   55 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~-~G~~-V~v~E~~~~~GG~   55 (531)
                      ++++|+|+|||-+|.+.+.+|.+ .|++ |..+|-++..-|+
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~   43 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGR   43 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTC
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCC
Confidence            46899999999999988877754 3666 6788877765555

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.66  E-value=0.23  Score=40.36  Aligned_cols=35  Identities=37%  Similarity=0.520  Sum_probs=30.6

Q ss_pred             CCCcEEEECC-ChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGG-GHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ....|+|.|| |-.|..+|..|+++|.+|+++.|+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            3577899994 8889999999999999999999964

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.57  E-value=0.22  Score=33.35  Aligned_cols=34  Identities=18%  Similarity=0.114  Sum_probs=30.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..|.|||||-=|-.-+....+.|++|.+++-.+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            4689999999999999999999999999998653

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.46  E-value=0.2  Score=38.98  Aligned_cols=34  Identities=29%  Similarity=0.199  Sum_probs=31.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      -..|+|||=|-.|-.+|..|+..|.+|+|+|..+
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            3679999999999999999999999999999975

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=87.90  E-value=0.15  Score=44.25  Aligned_cols=34  Identities=18%  Similarity=0.253  Sum_probs=31.0

Q ss_pred             CCcEEEECC-ChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGG-GHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +++|+|+|| |..|-..+.+|.++|++|+.+++++
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            478999998 9999999999999999999998754

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=87.17  E-value=0.24  Score=38.37  Aligned_cols=35  Identities=20%  Similarity=0.190  Sum_probs=32.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      -..|+|+|=|-.|-.+|.+|+..|.+|+|.|..+.
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI   57 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             CCEEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence            46899999999999999999999999999999873

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=87.11  E-value=0.28  Score=41.89  Aligned_cols=32  Identities=31%  Similarity=0.508  Sum_probs=26.5

Q ss_pred             cE-EEECCCh-hHHHHHHHHHHcCCcEEEEccCC
Q 048009           19 DA-LVIGGGH-NGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        19 dv-vIIGaGi-aGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      +| +|.||+- .|.+.|..|+++|.+|.+..++.
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            66 5557765 49999999999999999999864

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=86.96  E-value=0.26  Score=45.16  Aligned_cols=55  Identities=20%  Similarity=0.344  Sum_probs=41.0

Q ss_pred             HHHHcCcEEEcCcceeEEEecCCC---ceeEEEeC--CCc--EEEcCe-EEecCChHhHHhhcC
Q 048009          246 AAREAGAHIVTRAEVSQLMINDSG---RVNGVQLA--DGA--QVHSSI-VLSNATPYKTFMDLV  301 (531)
Q Consensus       246 ~~~~~G~~i~~~~~V~~I~~~~~g---~~~~V~~~--~g~--~~~ad~-VV~aa~~~~~~~~ll  301 (531)
                      .++..+.+|++++.|++|..++++   ++++|++.  +|+  ++.|++ ||+++|...+ .+||
T Consensus       234 ~~~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~S-P~LL  296 (385)
T d1cf3a1         234 NYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVS-PTIL  296 (385)
T ss_dssp             GTTCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTH-HHHH
T ss_pred             hhcCCcccccCCceEEEEEEcCCCceeEEEEEEEEcCCCCEEEEEeCCEEEEcCchhhC-HHHH
Confidence            345568999999999999887622   67888763  565  567776 9999998875 4554

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.64  E-value=0.27  Score=39.14  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=27.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcE-EEEccCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSV-AVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V-~v~E~~~   50 (531)
                      +.-+|+|+|+|..|+.++..+...|.++ .+.+.++
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            3467999999999999999998888765 5566543

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=86.06  E-value=0.17  Score=46.53  Aligned_cols=54  Identities=17%  Similarity=0.230  Sum_probs=39.5

Q ss_pred             HHHcCcEEEcCcceeEEEecCC---CceeEEEeC--CCc--EEEcCe-EEecCChHhHHhhcC
Q 048009          247 AREAGAHIVTRAEVSQLMINDS---GRVNGVQLA--DGA--QVHSSI-VLSNATPYKTFMDLV  301 (531)
Q Consensus       247 ~~~~G~~i~~~~~V~~I~~~~~---g~~~~V~~~--~g~--~~~ad~-VV~aa~~~~~~~~ll  301 (531)
                      +.+.+.+|++++.|++|..+++   .++++|++.  +|.  ++.|++ ||+|+|...+ .+||
T Consensus       241 ~~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~~~g~~~~v~A~keVILaAGai~S-P~LL  302 (391)
T d1gpea1         241 YQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAIS-PLIL  302 (391)
T ss_dssp             TTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTH-HHHH
T ss_pred             ccchhhhhhccceeeEEeeeCCCCCceEEeeEEecCCCeEEEEEeCCEEEEecchhcc-hHHH
Confidence            3456899999999999976531   268888764  443  467877 9999998875 4554

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=86.04  E-value=0.35  Score=38.54  Aligned_cols=33  Identities=21%  Similarity=0.198  Sum_probs=29.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHcC-CcEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAG-LSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G-~~V~v~E~~~   50 (531)
                      -.|+|+|+|-.|++++..++..| .+|.+.+.++
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            45999999999999999999997 5788888865

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=85.94  E-value=0.32  Score=38.72  Aligned_cols=34  Identities=21%  Similarity=0.182  Sum_probs=29.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      .-.|+|+|+|..|+.++..+...|. +|.+.+.++
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            3469999999999999999999985 688888864

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.76  E-value=0.31  Score=40.97  Aligned_cols=34  Identities=18%  Similarity=0.324  Sum_probs=29.3

Q ss_pred             CcEEEECCChh-HHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGHN-GLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGia-GL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      -+|+|.||+-+ |.+.|..|+++|++|.+++++..
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            36899999655 99999999999999999988653

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=85.76  E-value=0.36  Score=38.33  Aligned_cols=33  Identities=24%  Similarity=0.246  Sum_probs=28.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           18 WDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      -.|+|+|+|..|+.++..++..|- +|+++++++
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            459999999999999999999875 688898865

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=85.70  E-value=0.24  Score=37.80  Aligned_cols=49  Identities=10%  Similarity=0.063  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEe
Q 048009          239 VSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLS  289 (531)
Q Consensus       239 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~  289 (531)
                      +.+.+.+.+++.|++++.+..++.+..+...+  .+++.||+++.+|.+++
T Consensus        90 ~~~~~~~~~~~~~I~~~~~~~~~~v~vd~~~~--~~~~~~Ge~v~yD~l~v  138 (141)
T d1fcda2          90 WERLYGFGTENAMIEWHPGPDSAVVKVDGGEM--MVETAFGDEFKADVINL  138 (141)
T ss_dssp             HHHHHCSTTSSCSEEEECSSTTCEEEEEETTT--EEEETTCCEEECSEEEE
T ss_pred             HHHHHHHHHHhcCceeeecCCceEEeecCCcE--EEEeCCCcEEeeeEEEe
Confidence            44555555678899999987655555543122  37788999999999877

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=85.24  E-value=0.34  Score=40.48  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=31.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ...+|+|||+|-+|.-+|..|++.+.+++++=+...
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~   66 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH   66 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence            357899999999999999999999998888777543

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.17  E-value=0.37  Score=40.17  Aligned_cols=35  Identities=26%  Similarity=0.291  Sum_probs=29.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHc--------------------C-CcEEEEccCCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARA--------------------G-LSVAVLERRHV   51 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~--------------------G-~~V~v~E~~~~   51 (531)
                      ..+|+|||+|-.+|=||..|.+.                    | .+|+++.|+..
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            47899999999999999999983                    5 56999988653

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=85.14  E-value=0.35  Score=43.28  Aligned_cols=33  Identities=30%  Similarity=0.430  Sum_probs=29.7

Q ss_pred             CcEEEECC-ChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGG-GHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|+|+|| |..|-..+..|.++|++|+++++-.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~   34 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLC   34 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            47999998 8999999999999999999998743

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.05  E-value=0.4  Score=39.68  Aligned_cols=34  Identities=35%  Similarity=0.462  Sum_probs=28.0

Q ss_pred             CCcEEEECCChhHHHHHHHHH--------------------HcC-CcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLA--------------------RAG-LSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~--------------------~~G-~~V~v~E~~~   50 (531)
                      ..+|+|||+|-.+|=||..|.                    +.| .+|+++-|+.
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            468999999999999999887                    456 4588888864

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.95  E-value=0.32  Score=38.63  Aligned_cols=34  Identities=21%  Similarity=0.188  Sum_probs=28.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~   50 (531)
                      .-.|+|+|+|..|+.++..++..|. .|++.++++
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            4569999999999999999988874 677788864

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=84.79  E-value=0.41  Score=40.73  Aligned_cols=33  Identities=18%  Similarity=0.275  Sum_probs=26.1

Q ss_pred             CcE-EEECCCh-hHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDA-LVIGGGH-NGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dv-vIIGaGi-aGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++| +|.||+- .|+++|..|+++|++|+++++++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            355 4557643 59999999999999999999864

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=84.55  E-value=0.4  Score=40.66  Aligned_cols=33  Identities=33%  Similarity=0.543  Sum_probs=30.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERR   49 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~   49 (531)
                      ..+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            4789999999999999999999996 69999874

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=84.44  E-value=0.49  Score=42.74  Aligned_cols=49  Identities=8%  Similarity=0.231  Sum_probs=38.9

Q ss_pred             HcCcEEEcCcceeEEEecCC-CceeEEEeC---CCc--EEEcCeEEecCChHhHH
Q 048009          249 EAGAHIVTRAEVSQLMINDS-GRVNGVQLA---DGA--QVHSSIVLSNATPYKTF  297 (531)
Q Consensus       249 ~~G~~i~~~~~V~~I~~~~~-g~~~~V~~~---~g~--~~~ad~VV~aa~~~~~~  297 (531)
                      ..|.+|++++.|++|..+++ +++++|++.   +|+  ++.++.||++++...+-
T Consensus       230 ~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp  284 (379)
T d2f5va1         230 EERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNT  284 (379)
T ss_dssp             EEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHH
T ss_pred             CCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCH
Confidence            45789999999999998642 568888863   455  57799999999999863

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=84.19  E-value=0.63  Score=40.51  Aligned_cols=31  Identities=23%  Similarity=0.389  Sum_probs=25.5

Q ss_pred             EEEECC-ChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           20 ALVIGG-GHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        20 vvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|.|| |-.|.++|..|+++|.+|++.+++.
T Consensus        28 alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          28 AFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            555554 5569999999999999999999864

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=84.01  E-value=0.55  Score=37.10  Aligned_cols=34  Identities=18%  Similarity=0.315  Sum_probs=25.4

Q ss_pred             CCcEEEECCChhHHHHHHH--HHHc----CCcEEEEccCC
Q 048009           17 KWDALVIGGGHNGLTAAAY--LARA----GLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~--L~~~----G~~V~v~E~~~   50 (531)
                      .++|+|||||-.|.+.+..  |++.    +.+++++|.+.
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~   41 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE   41 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCc
Confidence            5799999999999776542  3322    45899999964

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.96  E-value=0.25  Score=38.49  Aligned_cols=34  Identities=15%  Similarity=0.250  Sum_probs=26.0

Q ss_pred             CCCcEEEECC-ChhHHHHHHHHHHcCC-------cEEEEccC
Q 048009           16 KKWDALVIGG-GHNGLTAAAYLARAGL-------SVAVLERR   49 (531)
Q Consensus        16 ~~~dvvIIGa-GiaGL~aA~~L~~~G~-------~V~v~E~~   49 (531)
                      +..+|.|||| |..|-++|+.|+..+.       +..+++..
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~   43 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT   43 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc
Confidence            4579999996 9999999999987542       35566553

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.66  E-value=0.5  Score=39.98  Aligned_cols=33  Identities=30%  Similarity=0.470  Sum_probs=27.6

Q ss_pred             cEEEECCChh-HHHHHHHHHHcCCcEEEEccCCC
Q 048009           19 DALVIGGGHN-GLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        19 dvvIIGaGia-GL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      -++|.||+-+ |.+.|..|+++|++|.+..++..
T Consensus         7 valITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           7 VAVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            3577787654 99999999999999999998753

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=83.31  E-value=0.53  Score=42.31  Aligned_cols=54  Identities=20%  Similarity=0.282  Sum_probs=39.3

Q ss_pred             HHHcCcEEEcCcceeEEEecCC--CceeEEEeC--CCc----EEEcC-eEEecCChHhHHhhcC
Q 048009          247 AREAGAHIVTRAEVSQLMINDS--GRVNGVQLA--DGA----QVHSS-IVLSNATPYKTFMDLV  301 (531)
Q Consensus       247 ~~~~G~~i~~~~~V~~I~~~~~--g~~~~V~~~--~g~----~~~ad-~VV~aa~~~~~~~~ll  301 (531)
                      +.+.+.+|++++.|++|..++.  .++++|++.  +|.    .+.|+ .||+|||...+ .+||
T Consensus       204 a~~~nl~i~~~~~V~rv~~~~~~g~~a~gV~~~~~~g~~~~~~v~a~~eVILsAGaI~T-P~LL  266 (351)
T d1ju2a1         204 GNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGT-PQLL  266 (351)
T ss_dssp             SCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHH-HHHH
T ss_pred             chhhhhhhhccchhhceeeeccccceeeEEEEEeCCCceEEEEeecCcEEEEeCccccC-HHHH
Confidence            4567899999999999998641  368888875  343    24454 49999999886 5554

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.27  E-value=0.49  Score=37.32  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=28.9

Q ss_pred             CCcEEEECC-ChhHHHHHHHHHHcC-CcEEEEccCC
Q 048009           17 KWDALVIGG-GHNGLTAAAYLARAG-LSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGa-GiaGL~aA~~L~~~G-~~V~v~E~~~   50 (531)
                      .-.|+|+|+ |..|+.++..+...| .+|++++.++
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccch
Confidence            456999995 999999999999888 5899999864

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=82.78  E-value=0.68  Score=38.96  Aligned_cols=34  Identities=18%  Similarity=0.319  Sum_probs=28.2

Q ss_pred             CCcEEEECCCh-hHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGH-NGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGi-aGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...++|.||+- .|.+.|..|+++|.+|++.+++.
T Consensus         5 gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34577778755 59999999999999999999863

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.69  E-value=0.64  Score=38.99  Aligned_cols=34  Identities=21%  Similarity=0.162  Sum_probs=29.1

Q ss_pred             CcEEEECCCh-hHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGH-NGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGi-aGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..|+|.||+- -|.+.|..|+++|++|.++++...
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            5689999965 499999999999999999987653

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=82.23  E-value=1.3  Score=34.15  Aligned_cols=29  Identities=7%  Similarity=-0.160  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHcCcEEEcCcceeEEEec
Q 048009          238 SVSMAIGSAAREAGAHIVTRAEVSQLMIN  266 (531)
Q Consensus       238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~  266 (531)
                      .....+.+.++++|++++++++|.+|..+
T Consensus        83 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~  111 (156)
T d1djqa2          83 LEYPNMMRRLHELHVEELGDHFCSRIEPG  111 (156)
T ss_dssp             TCHHHHHHHHHHTTCEEEETEEEEEEETT
T ss_pred             hHHHHHHHHHhhccceEEeccEEEEecCc
Confidence            34566778888999999999999999753

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=82.18  E-value=0.53  Score=40.21  Aligned_cols=34  Identities=35%  Similarity=0.440  Sum_probs=28.7

Q ss_pred             CcEEEECCCh-hHHHHHHHHHHcCCcEEEEccCCC
Q 048009           18 WDALVIGGGH-NGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        18 ~dvvIIGaGi-aGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ..++|.||+- .|.++|..|+++|.+|++..++..
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4577778866 499999999999999999999754

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=82.17  E-value=0.59  Score=39.19  Aligned_cols=33  Identities=42%  Similarity=0.496  Sum_probs=26.8

Q ss_pred             cEEEECCC-hhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           19 DALVIGGG-HNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        19 dvvIIGaG-iaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      .++|-||+ =.|.+.|..|+++|++|++.+++..
T Consensus         3 ~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            35666774 4499999999999999999998754

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=82.16  E-value=0.6  Score=40.07  Aligned_cols=33  Identities=27%  Similarity=0.358  Sum_probs=27.0

Q ss_pred             CcEEEECCCh-hHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGH-NGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGi-aGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .-++|.||+- .|.+.|..|+++|.+|.+.+++.
T Consensus         7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4466777755 49999999999999999999864

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.91  E-value=0.63  Score=39.64  Aligned_cols=33  Identities=33%  Similarity=0.336  Sum_probs=28.2

Q ss_pred             CcEEEECCChh-HHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHN-GLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGia-GL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .-|+|.||+-+ |+++|..|+++|.+|.+..++.
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34888888765 9999999999999999999863

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.88  E-value=0.63  Score=39.46  Aligned_cols=33  Identities=45%  Similarity=0.469  Sum_probs=27.9

Q ss_pred             CcEEEECCCh-hHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGH-NGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGi-aGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .-++|.||+- .|.+.|..|+++|.+|++..++.
T Consensus         6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   39 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4578888865 39999999999999999999863

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=81.63  E-value=0.64  Score=39.65  Aligned_cols=33  Identities=36%  Similarity=0.486  Sum_probs=27.4

Q ss_pred             CcEEEECCCh-hHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGH-NGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGi-aGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .-++|.||+- .|+++|..|+++|.+|.+.+++.
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4567778865 49999999999999999999863

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.54  E-value=0.67  Score=39.03  Aligned_cols=33  Identities=30%  Similarity=0.429  Sum_probs=27.7

Q ss_pred             CcEEEECCCh-hHHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGH-NGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGi-aGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..++|.||+- .|.++|..|+++|++|++..++.
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4578888865 49999999999999999998863

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.49  E-value=0.8  Score=40.00  Aligned_cols=37  Identities=30%  Similarity=0.272  Sum_probs=29.6

Q ss_pred             CcEEEECCChh-HHHHHHHHHHcCCcEEEEccCCCCCc
Q 048009           18 WDALVIGGGHN-GLTAAAYLARAGLSVAVLERRHVIGG   54 (531)
Q Consensus        18 ~dvvIIGaGia-GL~aA~~L~~~G~~V~v~E~~~~~GG   54 (531)
                      .-++|.||+-+ |.+.|..|+++|.+|+|.+++...-+
T Consensus         8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~   45 (302)
T d1gz6a_           8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKG   45 (302)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhh
Confidence            44666688665 89999999999999999998765443

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.20  E-value=0.7  Score=38.96  Aligned_cols=32  Identities=22%  Similarity=0.395  Sum_probs=26.2

Q ss_pred             cEEEE-CCChh-HHHHHHHHHHcCCcEEEEccCC
Q 048009           19 DALVI-GGGHN-GLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        19 dvvII-GaGia-GL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++++| ||+-+ |...|..|+++|.+|.+..++.
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45555 77664 8999999999999999999964

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=81.19  E-value=0.89  Score=36.85  Aligned_cols=33  Identities=30%  Similarity=0.307  Sum_probs=30.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009           17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERR   49 (531)
Q Consensus        17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~   49 (531)
                      ..+|+|.|-|-.|..+|..|.+.|.+|++.|.+
T Consensus        27 gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          27 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            478999999999999999999999999999875

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.16  E-value=0.9  Score=38.23  Aligned_cols=33  Identities=27%  Similarity=0.415  Sum_probs=28.1

Q ss_pred             CcEEEECCChh-HHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHN-GLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGia-GL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..++|.||+-+ |.+.|..|+++|++|.+.+++.
T Consensus         8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            56788888655 8999999999999999998863

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.10  E-value=0.77  Score=38.37  Aligned_cols=34  Identities=24%  Similarity=0.353  Sum_probs=29.0

Q ss_pred             CCcEEEECCCh-hHHHHHHHHHHcCCcEEEEccCC
Q 048009           17 KWDALVIGGGH-NGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        17 ~~dvvIIGaGi-aGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ...|+|.||+- .|.+.|..|+++|++|.+.+++.
T Consensus         4 gK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~   38 (234)
T d1o5ia_           4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   38 (234)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45688999865 49999999999999999998863

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=80.79  E-value=0.77  Score=38.81  Aligned_cols=33  Identities=36%  Similarity=0.472  Sum_probs=26.9

Q ss_pred             cEEEECCChh-HHHHHHHHHHcCCcEEEEccCCC
Q 048009           19 DALVIGGGHN-GLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        19 dvvIIGaGia-GL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      -++|.||+-+ |.+.|..|+++|.+|.+.+++..
T Consensus         7 ~alITGas~GIG~aia~~la~~G~~V~~~~~~~~   40 (248)
T d2d1ya1           7 GVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   40 (248)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4667776544 89999999999999999998753

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.75  E-value=0.58  Score=40.17  Aligned_cols=33  Identities=30%  Similarity=0.376  Sum_probs=28.6

Q ss_pred             CcEEEECCChh-HHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHN-GLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGia-GL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..++|.||+-+ |.+.|..|+++|.+|.+..|+.
T Consensus        15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            55888888765 9999999999999999998864

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=80.66  E-value=0.73  Score=39.22  Aligned_cols=33  Identities=27%  Similarity=0.471  Sum_probs=27.6

Q ss_pred             CcEEEECCChh-HHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHN-GLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGia-GL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .-++|.||+-+ |.++|..|+++|.+|.+.+++.
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   38 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   38 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34677788754 9999999999999999999864

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=80.65  E-value=0.74  Score=39.07  Aligned_cols=33  Identities=24%  Similarity=0.338  Sum_probs=28.2

Q ss_pred             CcEEEECCChh-HHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHN-GLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGia-GL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      .-++|.||+-+ |.+.|..|+++|.+|++.+++.
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45788888754 8999999999999999999864

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=80.62  E-value=0.91  Score=40.51  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=31.2

Q ss_pred             CCCcEEEECC-ChhHHHHHHHHHHcCCcEEEEccCC
Q 048009           16 KKWDALVIGG-GHNGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        16 ~~~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++..|+|+|| |..|-..+..|.++|++|.++=|+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            4678999997 9999999999999999999997753

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=80.55  E-value=0.8  Score=37.55  Aligned_cols=35  Identities=23%  Similarity=0.429  Sum_probs=30.0

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccC
Q 048009           15 EKKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERR   49 (531)
Q Consensus        15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~   49 (531)
                      -.+.+|+|.|+|-+|+..|..|.+.+. ++.++|+.
T Consensus        24 l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          24 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             hhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            346889999999999999999998874 58888885

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.48  E-value=0.75  Score=39.05  Aligned_cols=31  Identities=32%  Similarity=0.353  Sum_probs=25.9

Q ss_pred             EEEECCCh-hHHHHHHHHHHcCCcEEEEccCC
Q 048009           20 ALVIGGGH-NGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        20 vvIIGaGi-aGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|.||+- .|.++|..|+++|.+|.+..++.
T Consensus         6 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           6 ALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            55667754 49999999999999999999864

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=80.30  E-value=1.3  Score=35.16  Aligned_cols=36  Identities=25%  Similarity=0.245  Sum_probs=32.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009           16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV   51 (531)
Q Consensus        16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~   51 (531)
                      ....|.|||.|..|-..|..|..-|.+|.++++...
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCceEEEeccccccccceeeeecccccccccccccc
Confidence            357799999999999999999999999999998764

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=80.25  E-value=0.65  Score=39.60  Aligned_cols=31  Identities=29%  Similarity=0.306  Sum_probs=25.2

Q ss_pred             EEEECCCh-hHHHHHHHHHHcCCcEEEEccCC
Q 048009           20 ALVIGGGH-NGLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        20 vvIIGaGi-aGL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ++|.||+- .|++.|..|+++|.+|++..+++
T Consensus         7 alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           7 AVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            45556654 48899999999999999999864

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=80.03  E-value=0.65  Score=39.49  Aligned_cols=33  Identities=27%  Similarity=0.337  Sum_probs=27.8

Q ss_pred             CcEEEECCChh-HHHHHHHHHHcCCcEEEEccCC
Q 048009           18 WDALVIGGGHN-GLTAAAYLARAGLSVAVLERRH   50 (531)
Q Consensus        18 ~dvvIIGaGia-GL~aA~~L~~~G~~V~v~E~~~   50 (531)
                      ..++|.||+-+ |+++|..|+++|.+|.+.+++.
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45778888554 9999999999999999999863