Citrus Sinensis ID: 048011

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
Protein Sequence
MITRGLLENLRCLKWGAWRGCRNRIGLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGSQVTELSVIVGWVRETMGPLLVCFMPFIS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccEEHHcccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHcccHEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MITRGLLENlrclkwgawrgcrnriglsvvepWAAMVCLYFAPWVLIGLNILAIklnfddplegtrlhggsgfigsQVTELSVIVGWVRETMGPLLVCFMPFIS
Flexible Loop (DISEMBL)
mitrgllenlrclkwgawrgcrnriGLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGSQVTELSVIVGWVRETMGPLLVCFMPFIS
Low Complexity Region (SEG)
MITRGLLENLRCLKWGAWRGCRNRIGLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGSQVTELSVIVGWVRETMGPLLVCFMPFIS
Disordered region (IsUnstruct)
****GLLENLRCLKWGAWRGCRNRIGLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGSQVTELSVIVGWVRETMGPLLVCFMPFI*
Disordered Region (DISOPRED)
**TRGLLENLRCLKWGAWRGCRNRIGLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGSQVTELSVIVGWVRETMGPLLVCFMPFIS
Disordered Region (DISEMBL)
MITRGLLENLRCLKWGAWRGCRNRIGLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGSQVTELSVIVGWVRETMGPLLVCFMPFIS
Disordered Region (DISPRO)
MITRGLLENLRCLKWGAWRGCRNRIGLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGSQVTELSVIVGWVRETMGPLLVCFMPFIS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MITRGLLENLRCLKWGAWRGCRNRIGLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGSQVTELSVIVGWVRETMGPLLVCFMPFIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	104	2.2.26 [Sep-21-2011]
O04161	514	Ammonium transporter 1 me	N/A	no	0.740	0.149	0.394	3e-15
Q9ZPJ8	514	Ammonium transporter 1 me	yes	no	0.682	0.138	0.424	3e-14
Q9FVN0	460	Ammonium transporter 1 me	N/A	no	0.682	0.154	0.423	4e-13
Q7XQ12	498	Ammonium transporter 1 me	yes	no	0.682	0.142	0.386	6e-13
P58905	488	Ammonium transporter 1 me	N/A	no	0.740	0.157	0.359	1e-12
Q6K9G1	496	Ammonium transporter 1 me	no	no	0.653	0.137	0.514	4e-12
Q9SVT8	504	Ammonium transporter 1 me	no	no	0.653	0.134	0.544	1e-11
P54144	501	Ammonium transporter 1 me	no	no	0.682	0.141	0.370	3e-11
Q6K9G3	498	Ammonium transporter 1 me	no	no	0.740	0.154	0.353	8e-11
Q9SQH9	498	Ammonium transporter 1 me	no	no	0.682	0.142	0.379	2e-10

>sp|O04161|AMT12_SOLLC Ammonium transporter 1 member 2 OS=Solanum lycopersicum GN=AMT1-2 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 55/114 (48%), Gaps = 37/114 (32%)

Query: 26  GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSG------------- 72
           G +VVEPWAA+VC + A WVLIG N LA KL +DDPLE  +LHGG G             
Sbjct: 339 GCAVVEPWAAIVCGFIAAWVLIGFNALAAKLKYDDPLEAAQLHGGCGSWGIIFTGLFAKK 398

Query: 73  ------------------------FIGSQVTELSVIVGWVRETMGPLLVCFMPF 102
                                    +G+QV ++ VI+GWV  TMGPL      F
Sbjct: 399 EYVNEVYPGFPNRPYGLFMGGGGKLLGAQVIQVVVIIGWVSVTMGPLFYLLHKF 452

Ammonium transporter probably involved in ammonium uptake from the soil.
Solanum lycopersicum (taxid: 4081)

>sp|Q9ZPJ8|AMT12_ARATH Ammonium transporter 1 member 2 OS=Arabidopsis thaliana GN=AMT1-2 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 56/106 (52%), Gaps = 35/106 (33%)

Query: 26  GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSG------------- 72
           G +VVEPWAA+VC + A WVLIG N+LA KL +DDPLE  +LHGG G             
Sbjct: 344 GCAVVEPWAAIVCGFVASWVLIGFNLLAKKLKYDDPLEAAQLHGGCGAWGLIFTGLFARK 403

Query: 73  ---------------FIG-------SQVTELSVIVGWVRETMGPLL 96
                          F+G       +Q+ ++ VIVGWV  TMGPL 
Sbjct: 404 EYVNEIYSGDRPYGLFMGGGGKLLAAQIVQIIVIVGWVTVTMGPLF 449

Ammonium transporter probably involved in ammonium uptake from the soil.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVN0|AMT13_SOLLC Ammonium transporter 1 member 3 OS=Solanum lycopersicum GN=AMT1-3 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 54/111 (48%), Gaps = 40/111 (36%)

Query: 26  GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSG-----FIG----- 75
           G SVVEPWAA++C + A WVLIGLNILA+K  FDDPLE  +LHGG G     F G     
Sbjct: 299 GCSVVEPWAAILCGFCAAWVLIGLNILALKFKFDDPLEAAQLHGGCGAWGLIFTGLFAKE 358

Query: 76  ------------------------------SQVTELSVIVGWVRETMGPLL 96
                                         +Q+ EL  IV WV  TMGPL 
Sbjct: 359 EFVLQAYNSGKTQIIRPSGLILGGGWGLFGAQIVELLSIVVWVSLTMGPLF 409

Ammonium transporter that may be involved in ammonium transport throughout the plant.

Solanum lycopersicum (taxid: 4081)

>sp|Q7XQ12|AMT11_ORYSJ Ammonium transporter 1 member 1 OS=Oryza sativa subsp. japonica GN=AMT1-1 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/106 (38%), Positives = 52/106 (49%), Gaps = 35/106 (33%)

Query: 26  GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSG------------- 72
           G SVV+PWAA++C + + WVLIGLN LA +L FDDPLE  +LHGG G             
Sbjct: 324 GCSVVDPWAAIICGFVSAWVLIGLNALAARLKFDDPLEAAQLHGGCGAWGILFTALFARQ 383

Query: 73  ----------------------FIGSQVTELSVIVGWVRETMGPLL 96
                                  + + V ++ VI GWV  TMGPL 
Sbjct: 384 KYVEEIYGAGRPYGLFMGGGGKLLAAHVIQILVIFGWVSCTMGPLF 429

Ammonium transporter probably involved in ammonium uptake from the soil.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P58905|AMT11_SOLLC Ammonium transporter 1 member 1 OS=Solanum lycopersicum GN=AMT1-1 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 53/114 (46%), Gaps = 37/114 (32%)

Query: 26  GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSG------------- 72
           G SVVEPWAA++C + A  VLIG N+LA K  +DDPLE  +LHGG G             
Sbjct: 330 GCSVVEPWAAIICGFVAALVLIGFNMLAEKFKYDDPLEAAQLHGGCGAWGIIFTGLFAKG 389

Query: 73  ------------------------FIGSQVTELSVIVGWVRETMGPLLVCFMPF 102
                                    +G+ + ++ VI+GWV  TMGPL      F
Sbjct: 390 EFVDQVYPGKPGRPHGLFMGGGGKLLGAHIIQILVIIGWVSATMGPLFYILHKF 443

Ammonium transporter that may be involved in ammonium uptake from the soil.

Solanum lycopersicum (taxid: 4081)

>sp|Q6K9G1|AMT12_ORYSJ Ammonium transporter 1 member 2 OS=Oryza sativa subsp. japonica GN=AMT1-2 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 44/68 (64%)

Query: 26  GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGSQVTELSVIV 85
           G SVV+PWAA++C + + WVLIGLN LA +L FDDPLE  +LHGG G  G   T L    
Sbjct: 324 GCSVVDPWAAIICGFVSAWVLIGLNALAARLKFDDPLEAAQLHGGCGAWGVIFTALFARK 383

Query: 86  GWVRETMG 93
            +V +  G
Sbjct: 384 EYVDQIFG 391

Ammonium transporter probably involved in ammonium uptake from the soil and ammonium uptake and retrieval in the vascular system.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SVT8|AMT14_ARATH Ammonium transporter 1 member 4 OS=Arabidopsis thaliana GN=AMT1-4 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 43/68 (63%)

Query: 26  GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGSQVTELSVIV 85
           G SVVEPWAA+VC + A WVL+G N LA KL FDDPLE  +LHGG G  G   T L    
Sbjct: 341 GCSVVEPWAALVCGFVAAWVLMGCNRLAEKLQFDDPLEAAQLHGGCGAWGIIFTGLFAEK 400

Query: 86  GWVRETMG 93
            ++ E  G
Sbjct: 401 RYIAEIFG 408

High affinity ammonium transporter in the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|P54144|AMT11_ARATH Ammonium transporter 1 member 1 OS=Arabidopsis thaliana GN=AMT1-1 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/108 (37%), Positives = 51/108 (47%), Gaps = 37/108 (34%)

Query: 26  GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSG------------- 72
           G SVVEPWAA++C + A  VL+G N LA KL +DDPLE  +LHGG G             
Sbjct: 330 GCSVVEPWAAIICGFVAALVLLGCNKLAEKLKYDDPLEAAQLHGGCGAWGLIFTALFAQE 389

Query: 73  ------------------------FIGSQVTELSVIVGWVRETMGPLL 96
                                    +G+Q+ ++ VI GWV  TMG L 
Sbjct: 390 KYLNQIYGNKPGRPHGLFMGGGGKLLGAQLIQIIVITGWVSATMGTLF 437

High affinity ammonium transporter probably involved in ammonium uptake from the soil, long-distance transport to the shoots and re-uptake of apoplastic ammonium that derives from photorespiration in shoots. Contributes with AMT1-3 to the overall ammonium uptake capacity in roots under nitrogen-deficiency conditions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K9G3|AMT13_ORYSJ Ammonium transporter 1 member 3 OS=Oryza sativa subsp. japonica GN=AMT1-3 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 54/113 (47%), Gaps = 36/113 (31%)

Query: 26  GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSG------------- 72
           G SVV+PWA+++C + + WVLIG N L++ L FDDPLE T+LH G G             
Sbjct: 326 GCSVVDPWASVICGFVSAWVLIGCNKLSLILKFDDPLEATQLHAGCGAWGIIFTALFARR 385

Query: 73  ----------------FIG-------SQVTELSVIVGWVRETMGPLLVCFMPF 102
                           F+G       + + ++ VIVGWV  TMG L      F
Sbjct: 386 EYVELIYGVPGRPYGLFMGGGGRLLAAHIVQILVIVGWVSATMGTLFYVLHRF 438

Ammonium transporter probably involved in ammonium uptake from the soil.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SQH9|AMT13_ARATH Ammonium transporter 1 member 3 OS=Arabidopsis thaliana GN=AMT1-3 PE=1 SV=2

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 51/108 (47%), Gaps = 37/108 (34%)

Query: 26  GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSG------------- 72
           G SVVEPWAA+VC + A  VLIG N LA  + +DDPLE  +LHGG G             
Sbjct: 334 GCSVVEPWAAIVCGFMASVVLIGCNKLAELVQYDDPLEAAQLHGGCGAWGLIFVGLFAKE 393

Query: 73  ------------------------FIGSQVTELSVIVGWVRETMGPLL 96
                                    +G+Q+ ++ VIVGWV  TMG L 
Sbjct: 394 KYLNEVYGATPGRPYGLFMGGGGKLLGAQLVQILVIVGWVSATMGTLF 441

Ammonium transporter probably involved in ammonium uptake from the soil. Contributes with AMT1-1 to the overall ammonium uptake capacity in roots under nitrogen-deficiency conditions.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
147833023	1819	hypothetical protein VITISV_028790 [Viti	0.682	0.039	0.432	3e-16
297745906	445	unnamed protein product [Vitis vinifera]	0.682	0.159	0.527	1e-15
377656735	466	AMT1;5 [Malus hupehensis var. mengshanen	0.682	0.152	0.450	5e-15
357441291	1109	Ammonium transporter [Medicago truncatul	0.682	0.064	0.433	9e-14
377656737	466	AMT1;6 [Malus hupehensis var. mengshanen	0.682	0.152	0.441	9e-14
350536567	514	ammonium transporter 1 member 2 [Solanum	0.740	0.149	0.394	1e-13
225434604	465	PREDICTED: ammonium transporter 1 member	0.682	0.152	0.432	2e-13
357441293	824	Ammonium transporter [Medicago truncatul	0.682	0.086	0.433	3e-13
224145861	506	ammonium transporter [Populus trichocarp	0.682	0.140	0.416	7e-13
15217741	514	ammonium transporter 1;2 [Arabidopsis th	0.682	0.138	0.424	1e-12

>gi|147833023|emb|CAN61893.1| hypothetical protein VITISV_028790 [Vitis vinifera]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/111 (43%), Positives = 55/111 (49%), Gaps = 40/111 (36%)

Query: 26   GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGS-------------- 71
            G SVVEPWAA+VC +F+ WVLIGLNILA+KL FDDPLE T+LHGG               
Sbjct: 1656 GCSVVEPWAAIVCGFFSAWVLIGLNILALKLGFDDPLEATQLHGGCGAWGLIFTGLFAKE 1715

Query: 72   --------------------------GFIGSQVTELSVIVGWVRETMGPLL 96
                                      G IG Q  E+  I+ WV  TMGPL 
Sbjct: 1716 EFVVQAYDSGESGVVRPYGLFMGGGWGLIGCQAVEVLAIICWVSITMGPLF 1766

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745906|emb|CBI15962.3| unnamed protein product [Vitis vinifera]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 55/91 (60%), Gaps = 20/91 (21%)

Query: 26  GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGS-------------- 71
           G SVVEPWAA+VC +F+ WVLIGLNILA+KL FDDPLE T+LHGG               
Sbjct: 302 GCSVVEPWAAIVCGFFSAWVLIGLNILALKLGFDDPLEATQLHGGCGAWGLIFTGLPYGL 361

Query: 72  ------GFIGSQVTELSVIVGWVRETMGPLL 96
                 G IG Q  E+  I+ WV  TMGPL 
Sbjct: 362 FMGGGWGLIGCQAVEVLAIICWVSITMGPLF 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377656735|gb|AFB73922.1| AMT1;5 [Malus hupehensis var. mengshanensis]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/111 (45%), Positives = 57/111 (51%), Gaps = 40/111 (36%)

Query: 26  GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGS-------------- 71
           G +VVEPWAA+VC +FA WVLIGLNILA+KL FDDPLE  +LHGG               
Sbjct: 304 GCAVVEPWAAVVCGFFAAWVLIGLNILALKLQFDDPLEAAQLHGGCGAWGLIFTGLFAKE 363

Query: 72  --------------------------GFIGSQVTELSVIVGWVRETMGPLL 96
                                     G +G+QV EL  IVGWV  TMGPL 
Sbjct: 364 KFVVQAYNAGAVGTVRPYGLFMGGGWGLLGAQVVELLAIVGWVSLTMGPLF 414

Source: Malus hupehensis var. mengshanensis

Species: Malus hupehensis

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441291|ref|XP_003590923.1| Ammonium transporter [Medicago truncatula] gi|355479971|gb|AES61174.1| Ammonium transporter [Medicago truncatula]

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/106 (43%), Positives = 53/106 (50%), Gaps = 35/106 (33%)

Query: 26   GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIG---------- 75
            G SVVEPWAA+VC + A WVLIGLN LAIK+ +DDPLE  +LHGG G  G          
Sbjct: 929  GCSVVEPWAAIVCGFVAAWVLIGLNKLAIKVKYDDPLEAAQLHGGCGAWGVLFTGLFAKG 988

Query: 76   -------------------------SQVTELSVIVGWVRETMGPLL 96
                                     +QV E+ VI GWV  TM PL 
Sbjct: 989  EYVDEIYGVGRPYGLLMGGGGRLFAAQVVEVLVICGWVTVTMVPLF 1034

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377656737|gb|AFB73923.1| AMT1;6 [Malus hupehensis var. mengshanensis]

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/111 (44%), Positives = 55/111 (49%), Gaps = 40/111 (36%)

Query: 26  GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGS-------------- 71
           G +VVEPWAA+VC +FA  VLIG NILAIKL FDDPLE T+LHGG               
Sbjct: 304 GCAVVEPWAAVVCGFFAACVLIGFNILAIKLQFDDPLEATQLHGGCGAWGLIFTGLFAKE 363

Query: 72  --------------------------GFIGSQVTELSVIVGWVRETMGPLL 96
                                     G +G+QV EL  I GWV  TMGPL 
Sbjct: 364 EFVVQAYNAGAVGTVRPYGLFMGGGWGLLGAQVAELLAIAGWVSLTMGPLF 414

Source: Malus hupehensis var. mengshanensis

Species: Malus hupehensis

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536567|ref|NP_001234253.1| ammonium transporter 1 member 2 [Solanum lycopersicum] gi|3023281|sp|O04161.1|AMT12_SOLLC RecName: Full=Ammonium transporter 1 member 2; AltName: Full=LeAMT1;2 gi|2065194|emb|CAA64475.1| ammonium transporter [Solanum lycopersicum]

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 55/114 (48%), Gaps = 37/114 (32%)

Query: 26  GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSG------------- 72
           G +VVEPWAA+VC + A WVLIG N LA KL +DDPLE  +LHGG G             
Sbjct: 339 GCAVVEPWAAIVCGFIAAWVLIGFNALAAKLKYDDPLEAAQLHGGCGSWGIIFTGLFAKK 398

Query: 73  ------------------------FIGSQVTELSVIVGWVRETMGPLLVCFMPF 102
                                    +G+QV ++ VI+GWV  TMGPL      F
Sbjct: 399 EYVNEVYPGFPNRPYGLFMGGGGKLLGAQVIQVVVIIGWVSVTMGPLFYLLHKF 452

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434604|ref|XP_002278495.1| PREDICTED: ammonium transporter 1 member 3 [Vitis vinifera]

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 55/111 (49%), Gaps = 40/111 (36%)

Query: 26  GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGS-------------- 71
           G SVVEPWAA+VC +F+ WVLIGLNILA+KL FDDPLE T+LHGG               
Sbjct: 302 GCSVVEPWAAIVCGFFSAWVLIGLNILALKLGFDDPLEATQLHGGCGAWGLIFTGLFAKE 361

Query: 72  --------------------------GFIGSQVTELSVIVGWVRETMGPLL 96
                                     G IG Q  E+  I+ WV  TMGPL 
Sbjct: 362 EFVVQAYDSGESGVVRPYGLFMGGGWGLIGCQAVEVLAIICWVSITMGPLF 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441293|ref|XP_003590924.1| Ammonium transporter [Medicago truncatula] gi|355479972|gb|AES61175.1| Ammonium transporter [Medicago truncatula]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/106 (43%), Positives = 53/106 (50%), Gaps = 35/106 (33%)

Query: 26  GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIG---------- 75
           G SVVEPWAA+VC + A WVLIGLN LAIK+ +DDPLE  +LHGG G  G          
Sbjct: 644 GCSVVEPWAAIVCGFVAAWVLIGLNKLAIKVKYDDPLEAAQLHGGCGAWGVLFTGLFAKG 703

Query: 76  -------------------------SQVTELSVIVGWVRETMGPLL 96
                                    +QV E+ VI GWV  TM PL 
Sbjct: 704 EYVDEIYGVGRPYGLLMGGGGRLFAAQVVEVLVICGWVTVTMVPLF 749

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145861|ref|XP_002325790.1| ammonium transporter [Populus trichocarpa] gi|222862665|gb|EEF00172.1| ammonium transporter [Populus trichocarpa]

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 45/108 (41%), Positives = 53/108 (49%), Gaps = 37/108 (34%)

Query: 26  GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIG---------- 75
           G SVVEPWAA++C + A WVLIG N LA KL +DDPLE  +LHGG G  G          
Sbjct: 333 GCSVVEPWAAIICGFVAAWVLIGCNKLADKLQYDDPLEAAQLHGGCGMWGLLFTGLFAKE 392

Query: 76  ---------------------------SQVTELSVIVGWVRETMGPLL 96
                                      +Q+ E+ VIVGWV  TMGPL 
Sbjct: 393 TYVNEVYSNKPGRPYGLFMGGGGKLLAAQIIEILVIVGWVSATMGPLF 440

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217741|ref|NP_176658.1| ammonium transporter 1;2 [Arabidopsis thaliana] gi|22001525|sp|Q9ZPJ8.1|AMT12_ARATH RecName: Full=Ammonium transporter 1 member 2; Short=AtAMT1;2 gi|5042414|gb|AAD38253.1|AC006193_9 Ammonium transporter ATM1;2 [Arabidopsis thaliana] gi|4324714|gb|AAD17001.1| ammonium transporter [Arabidopsis thaliana] gi|17064990|gb|AAL32649.1| Ammonium transporter ATM1 [Arabidopsis thaliana] gi|20260052|gb|AAM13373.1| ammonium transporter ATM1;2 [Arabidopsis thaliana] gi|332196167|gb|AEE34288.1| ammonium transporter 1;2 [Arabidopsis thaliana]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 56/106 (52%), Gaps = 35/106 (33%)

Query: 26  GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSG------------- 72
           G +VVEPWAA+VC + A WVLIG N+LA KL +DDPLE  +LHGG G             
Sbjct: 344 GCAVVEPWAAIVCGFVASWVLIGFNLLAKKLKYDDPLEAAQLHGGCGAWGLIFTGLFARK 403

Query: 73  ---------------FIG-------SQVTELSVIVGWVRETMGPLL 96
                          F+G       +Q+ ++ VIVGWV  TMGPL 
Sbjct: 404 EYVNEIYSGDRPYGLFMGGGGKLLAAQIVQIIVIVGWVTVTMGPLF 449

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
UNIPROTKB|Q9FVN0	460	AMT1-3 "Ammonium transporter 1	0.538	0.121	0.642	1.9e-13
UNIPROTKB|Q7XQ12	498	AMT1-1 "Ammonium transporter 1	0.653	0.136	0.529	3.7e-13
TAIR|locus:2117758	504	AMT1;4 "ammonium transporter 1	0.653	0.134	0.544	1e-12
UNIPROTKB|O04161	514	AMT1-2 "Ammonium transporter 1	0.625	0.126	0.553	1.4e-12
TAIR|locus:2010791	514	AMT1;2 "ammonium transporter 1	0.625	0.126	0.553	1.4e-12
UNIPROTKB|P58905	488	AMT1-1 "Ammonium transporter 1	0.538	0.114	0.571	1.1e-10
UNIPROTKB|Q6K9G3	498	AMT1-3 "Ammonium transporter 1	0.538	0.112	0.535	1.1e-10
TAIR|locus:2140877	501	AMT1;1 "ammonium transporter 1	0.538	0.111	0.571	1.9e-10
TAIR|locus:2087168	496	AMT1;5 "ammonium transporter 1	0.653	0.137	0.485	1.1e-09
TAIR|locus:2087173	498	AMT1;3 "ammonium transporter 1	0.480	0.100	0.6	1.7e-09

UNIPROTKB|Q9FVN0 AMT1-3 "Ammonium transporter 1 member 3" [Solanum lycopersicum (taxid:4081)]

 Score = 183 (69.5 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 36/56 (64%), Positives = 41/56 (73%)

Query:    26 GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGSQVTEL 81
             G SVVEPWAA++C + A WVLIGLNILA+K  FDDPLE  +LHGG G  G   T L
Sbjct:   299 GCSVVEPWAAILCGFCAAWVLIGLNILALKFKFDDPLEAAQLHGGCGAWGLIFTGL 354

GO:0015696 "ammonium transport" evidence=IGI

UNIPROTKB|Q7XQ12 AMT1-1 "Ammonium transporter 1 member 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 181 (68.8 bits), Expect = 3.7e-13, P = 3.7e-13
 Identities = 36/68 (52%), Positives = 44/68 (64%)

Query:    26 GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGSQVTELSVIV 85
             G SVV+PWAA++C + + WVLIGLN LA +L FDDPLE  +LHGG G  G   T L    
Sbjct:   324 GCSVVDPWAAIICGFVSAWVLIGLNALAARLKFDDPLEAAQLHGGCGAWGILFTALFARQ 383

Query:    86 GWVRETMG 93
              +V E  G
Sbjct:   384 KYVEEIYG 391

GO:0015696 "ammonium transport" evidence=IGI

TAIR|locus:2117758 AMT1;4 "ammonium transporter 1;4" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 37/68 (54%), Positives = 43/68 (63%)

Query:    26 GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGSQVTELSVIV 85
             G SVVEPWAA+VC + A WVL+G N LA KL FDDPLE  +LHGG G  G   T L    
Sbjct:   341 GCSVVEPWAALVCGFVAAWVLMGCNRLAEKLQFDDPLEAAQLHGGCGAWGIIFTGLFAEK 400

Query:    86 GWVRETMG 93
              ++ E  G
Sbjct:   401 RYIAEIFG 408

GO:0005576 "extracellular region" evidence=ISM

GO:0006810 "transport" evidence=ISS

GO:0008519 "ammonium transmembrane transporter activity" evidence=IEA;ISS;IDA

GO:0015695 "organic cation transport" evidence=ISS;IMP;IDA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0015398 "high affinity secondary active ammonium transmembrane transporter activity" evidence=IMP

GO:0072488 "ammonium transmembrane transport" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|O04161 AMT1-2 "Ammonium transporter 1 member 2" [Solanum lycopersicum (taxid:4081)]

 Score = 176 (67.0 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 36/65 (55%), Positives = 42/65 (64%)

Query:    26 GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGSQVTELSVIV 85
             G +VVEPWAA+VC + A WVLIG N LA KL +DDPLE  +LHGG G  G   T L    
Sbjct:   339 GCAVVEPWAAIVCGFIAAWVLIGFNALAAKLKYDDPLEAAQLHGGCGSWGIIFTGLFAKK 398

Query:    86 GWVRE 90
              +V E
Sbjct:   399 EYVNE 403

GO:0015696 "ammonium transport" evidence=IGI

TAIR|locus:2010791 AMT1;2 "ammonium transporter 1;2" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 36/65 (55%), Positives = 43/65 (66%)

Query:    26 GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGSQVTELSVIV 85
             G +VVEPWAA+VC + A WVLIG N+LA KL +DDPLE  +LHGG G  G   T L    
Sbjct:   344 GCAVVEPWAAIVCGFVASWVLIGFNLLAKKLKYDDPLEAAQLHGGCGAWGLIFTGLFARK 403

Query:    86 GWVRE 90
              +V E
Sbjct:   404 EYVNE 408

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=ISS

GO:0008519 "ammonium transmembrane transporter activity" evidence=IEA;ISS

GO:0015695 "organic cation transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0072488 "ammonium transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0015696 "ammonium transport" evidence=IMP

GO:0015843 "methylammonium transport" evidence=IMP

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

UNIPROTKB|P58905 AMT1-1 "Ammonium transporter 1 member 1" [Solanum lycopersicum (taxid:4081)]

 Score = 158 (60.7 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 32/56 (57%), Positives = 38/56 (67%)

Query:    26 GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGSQVTEL 81
             G SVVEPWAA++C + A  VLIG N+LA K  +DDPLE  +LHGG G  G   T L
Sbjct:   330 GCSVVEPWAAIICGFVAALVLIGFNMLAEKFKYDDPLEAAQLHGGCGAWGIIFTGL 385

GO:0015696 "ammonium transport" evidence=IGI

UNIPROTKB|Q6K9G3 AMT1-3 "Ammonium transporter 1 member 3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 158 (60.7 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 30/56 (53%), Positives = 39/56 (69%)

Query:    26 GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGSQVTEL 81
             G SVV+PWA+++C + + WVLIG N L++ L FDDPLE T+LH G G  G   T L
Sbjct:   326 GCSVVDPWASVICGFVSAWVLIGCNKLSLILKFDDPLEATQLHAGCGAWGIIFTAL 381

GO:0015696 "ammonium transport" evidence=IGI

TAIR|locus:2140877 AMT1;1 "ammonium transporter 1;1" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 32/56 (57%), Positives = 38/56 (67%)

Query:    26 GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGSQVTEL 81
             G SVVEPWAA++C + A  VL+G N LA KL +DDPLE  +LHGG G  G   T L
Sbjct:   330 GCSVVEPWAAIICGFVAALVLLGCNKLAEKLKYDDPLEAAQLHGGCGAWGLIFTAL 385

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=ISS

GO:0008519 "ammonium transmembrane transporter activity" evidence=IEA;ISS;IMP;IDA

GO:0015695 "organic cation transport" evidence=ISS;IMP;IDA

GO:0016020 "membrane" evidence=ISS

GO:0015696 "ammonium transport" evidence=RCA;IDA

GO:0051258 "protein polymerization" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0010311 "lateral root formation" evidence=IMP

GO:0080181 "lateral root branching" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2087168 AMT1;5 "ammonium transporter 1;5" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 33/68 (48%), Positives = 40/68 (58%)

Query:    26 GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGSQVTELSVIV 85
             G SVV+PWAA+VC + A  VLIG N LA  L +DDPLE  +LHGG G  G     L    
Sbjct:   333 GCSVVDPWAAIVCGFVASLVLIGCNKLAELLKYDDPLEAAQLHGGCGAWGLIFVGLFAKE 392

Query:    86 GWVRETMG 93
              ++ E  G
Sbjct:   393 KYINEVYG 400

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=ISS

GO:0008519 "ammonium transmembrane transporter activity" evidence=IEA;ISS;IDA

GO:0015695 "organic cation transport" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0015696 "ammonium transport" evidence=IDA

TAIR|locus:2087173 AMT1;3 "ammonium transporter 1;3" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 30/50 (60%), Positives = 35/50 (70%)

Query:    26 GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIG 75
             G SVVEPWAA+VC + A  VLIG N LA  + +DDPLE  +LHGG G  G
Sbjct:   334 GCSVVEPWAAIVCGFMASVVLIGCNKLAELVQYDDPLEAAQLHGGCGAWG 383

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=ISS

GO:0008519 "ammonium transmembrane transporter activity" evidence=IEA;ISS;IMP

GO:0015695 "organic cation transport" evidence=ISS;IMP

GO:0016020 "membrane" evidence=IEA;ISS

GO:0015696 "ammonium transport" evidence=IMP

GO:0010311 "lateral root formation" evidence=IMP

GO:0080181 "lateral root branching" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024113001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (465 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00028171001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (198 aa)	•		•				•		0.900
	GSVIVG00038598001	SubName- Full=Chromosome chr3 scaffold_95, whole genome shotgun sequence (Chromosome chr16 scaf [...] (79 aa)	•						•		0.798
	GSVIVG00007383001	SubName- Full=Chromosome chr3 scaffold_95, whole genome shotgun sequence (Chromosome chr16 scaf [...] (79 aa)	•						•		0.798
	GSVIVG00000595001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (351 aa)	•						•		0.603
	GSVIVG00035063001	SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (127 aa)	•						•		0.514
	GSVIVG00018944001	RecName- Full=Citrate synthase; (466 aa)							•		0.446
	GSVIVG00036600001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (595 aa)							•		0.412

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	104
TIGR00836	403	TIGR00836, amt, ammonium transporter	1e-05
pfam00909	399	pfam00909, Ammonium_transp, Ammonium Transporter F	4e-05

>gnl|CDD|233145 TIGR00836, amt, ammonium transporter

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 26  GLSVVEPWAAMVC-LYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGS 76
           G  VV PW A++  L       + ++ L  KL  DDPL+   +HG  G  G 
Sbjct: 273 GCGVVTPWGAIIIGLVAGVLCYLAVSKLKKKLKIDDPLDAFAVHGVGGIWGL 324

The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally characterized members of the Amt family are ammonia or ammonium uptake transporters. Some, but not others, also transport methylammonium. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf [Transport and binding proteins, Cations and iron carrying compounds]. Length = 403

>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 28  SVVEPWAAMVC-LYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGS 76
            VV PW A++  L      ++G   L  KL  DDPL+   +HG  G  G 
Sbjct: 270 GVVTPWGALIIGLIAGVVSVLGYKKLKEKLGIDDPLDVFPVHGVGGIWGG 319

Length = 399

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	104
COG0004	409	AmtB Ammonia permease [Inorganic ion transport and	99.96
KOG0682	500	consensus Ammonia permease [Inorganic ion transpor	99.96
TIGR03644	404	marine_trans_1 probable ammonium transporter, mari	99.95
TIGR00836	403	amt ammonium transporter. The mechanism of energy	99.94
PRK10666	428	ammonium transporter; Provisional	99.94
PF00909	399	Ammonium_transp: Ammonium Transporter Family; Inte	99.93
KOG3796	442	consensus Ammonium transporter RHBG [Intracellular	97.86
PF11085	173	YqhR: Conserved membrane protein YqhR; InterPro: I	81.11

>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.6e-29  Score=199.36  Aligned_cols=103  Identities=23%  Similarity=0.208  Sum_probs=98.3

Q ss_pred             CchhhHHHHHhcCcCchhhhhccc--------ccCCCCChHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCcccccccch
Q 048011            1 MITRGLLENLRCLKWGAWRGCRNR--------IGLSVVEPWAAMVCLYFAPWVLIGLNIL-AIKLNFDDPLEGTRLHGGS   71 (104)
Q Consensus         1 ~~t~~~~~~~~~~k~~~~~~~nG~--------a~~~~v~p~~A~iiG~iag~~~~~~~~~-~~~~~iDD~vda~~vHg~~   71 (104)
                      |++|++.||+++||||+.+++||+        |+|++|+||+|++||+++|++|+++.++ ++|+|+|||+|+||+||+|
T Consensus       241 ~l~w~~~e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~a~~~lk~~l~~DD~ld~f~vHGvg  320 (409)
T COG0004         241 ALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFAVKLLKKKLGVDDALDVFGVHGVG  320 (409)
T ss_pred             HHHHHHHHHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccceeccchh
Confidence            579999999999999999999999        9999999999999999999999999985 4569999999999999999


Q ss_pred             h---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 048011           72 G---------------------------FIGSQVTELSVIVGWVRETMGPLLVCFMPFI  103 (104)
Q Consensus        72 G---------------------------~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~~  103 (104)
                      |                           |++.|+++++++..|+++.|+++++++|+++
T Consensus       321 Gi~G~i~~GiFa~~~~~~~~G~~~~~~~~l~~Q~~~v~~~~~~~~v~t~ii~~vl~~~~  379 (409)
T COG0004         321 GIVGAILTGIFAAPAVGGGGGLFYGGGVQLGVQLLGVLVTIVYAFVVTFIILKVLKLII  379 (409)
T ss_pred             hHHHHHHHHHhcCccccccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9                           8999999999999999999999999999874

>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.9e-29  Score=203.14  Aligned_cols=101  Identities=32%  Similarity=0.458  Sum_probs=99.5

Q ss_pred             chhhHHHHHhcCcCchhhhhccc--------ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchh-
Q 048011            2 ITRGLLENLRCLKWGAWRGCRNR--------IGLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSG-   72 (104)
Q Consensus         2 ~t~~~~~~~~~~k~~~~~~~nG~--------a~~~~v~p~~A~iiG~iag~~~~~~~~~~~~~~iDD~vda~~vHg~~G-   72 (104)
                      +||++++|+++|||++.++|||+        |||++++||+|+++|++++++|+...++++|+|||||+|++++||+|| 
T Consensus       273 lt~~~~d~~~~~kwsv~~~cnG~laGlVaiT~gc~~v~pWaAiviG~va~~~~~~~~kL~~~lkvDDpl~~f~~Hgv~G~  352 (500)
T KOG0682|consen  273 LTWLIIDYLRHGKWSVIGLCNGILAGLVAITPGCGVVEPWAAIVIGAVAGLVCNAANKLKERLKVDDPLDAFAVHGVGGI  352 (500)
T ss_pred             hhhhhhhhhhcCCcchhhhHHHHHHHHHhhcCCCcccCcHHHHHHhHHHHHHHHHHHHHHHHhcCCcHHHHHHHhccccc
Confidence            68999999999999999999999        999999999999999999999999999999999999999999999999 


Q ss_pred             -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 048011           73 -----------------------------------FIGSQVTELSVIVGWVRETMGPLLVCFMPF  102 (104)
Q Consensus        73 -----------------------------------~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~  102 (104)
                                                         |++.|+.+++++..|++++|+++++++||+
T Consensus       353 wG~I~~glFa~~~v~~~~~~~~~~~~G~~~~~~~kqLg~Qla~i~ai~~ws~~~t~iilf~l~ki  417 (500)
T KOG0682|consen  353 WGLIFTGLFAHDDVAAMDGTTIARISGLWMGHGFKQLGYQLAGILAIAAWSAVVTFIILFLLNKI  417 (500)
T ss_pred             hhhheeeeeccCccccccCCCccCCCceeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                                               999999999999999999999999999986

>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype

Probab=99.95  E-value=2.8e-28  Score=194.08  Aligned_cols=103  Identities=22%  Similarity=0.176  Sum_probs=99.6

Q ss_pred             CchhhHHHHHhcCcCchhhhhccc--------ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchh
Q 048011            1 MITRGLLENLRCLKWGAWRGCRNR--------IGLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSG   72 (104)
Q Consensus         1 ~~t~~~~~~~~~~k~~~~~~~nG~--------a~~~~v~p~~A~iiG~iag~~~~~~~~~~~~~~iDD~vda~~vHg~~G   72 (104)
                      +++|++++++++||+|+..++||+        |+|++++||+|+++|+++|++|++..++++|+|||||+|++|+||+||
T Consensus       254 ~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaITa~~~~v~p~~A~iiG~iag~v~~~~~~~~~~~~iDD~~~~~~vHg~~G  333 (404)
T TIGR03644       254 AIAALLLTKLLFGKADLTMVLNGALAGLVAITAEPLTPSPLAATLIGAVGGVIVVFSIVLLDKLKIDDPVGAISVHGVAG  333 (404)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHhhhhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCchHhhhHHH
Confidence            368999999999999999999999        999999999999999999999999999999999999999999999999


Q ss_pred             --------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 048011           73 --------------FIGSQVTELSVIVGWVRETMGPLLVCFMPFI  103 (104)
Q Consensus        73 --------------~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~~  103 (104)
                                    |++.|++|++++.+|++..|+++++++|++.
T Consensus       334 i~G~i~~glf~~~~~l~~Ql~g~~~~~~~~~~~s~~~~~il~~~~  378 (404)
T TIGR03644       334 IWGTLVVPITNGDASFGAQLIGAATIFAWVFVTSLIVWFILKATM  378 (404)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                          9999999999999999999999999999864

Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.

>TIGR00836 amt ammonium transporter

Probab=99.94  E-value=3.3e-27  Score=187.88  Aligned_cols=103  Identities=27%  Similarity=0.342  Sum_probs=98.2

Q ss_pred             CchhhHHHHHhcCcCchhhhhccc--------ccCCCCChHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCcccccccch
Q 048011            1 MITRGLLENLRCLKWGAWRGCRNR--------IGLSVVEPWAAMVCLYFAPWVLIGLNI-LAIKLNFDDPLEGTRLHGGS   71 (104)
Q Consensus         1 ~~t~~~~~~~~~~k~~~~~~~nG~--------a~~~~v~p~~A~iiG~iag~~~~~~~~-~~~~~~iDD~vda~~vHg~~   71 (104)
                      +++|++++++++||+|+..++||+        |+|++++||+|+++|+++|++|++..+ +++|+|||||+|++|+||+|
T Consensus       240 ~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaita~a~~v~p~~A~viG~iag~~~~~~~~~l~~~~~iDD~~~~~~vHg~~  319 (403)
T TIGR00836       240 GLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLVAGVLCYLAVSKLKKKLKIDDPLDAFAVHGVG  319 (403)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHhhhhhhheeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhhhh
Confidence            368999999999999999999999        999999999999999999999999997 77899999999999999999


Q ss_pred             h-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 048011           72 G-----------------------------FIGSQVTELSVIVGWVRETMGPLLVCFMPFI  103 (104)
Q Consensus        72 G-----------------------------~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~~  103 (104)
                      |                             |++.|++|++++..|++..++++++++|++.
T Consensus       320 Gi~G~i~~glfa~~~~~~~~~g~~~~~~~~~l~~Ql~g~~~~~~~s~~~~~ii~~il~~~~  380 (403)
T TIGR00836       320 GIWGLIATGLFAAPKVGGVGTGGLLGGNGKQLGVQLIGIAAIIAWAFVVTFIILKILDKTI  380 (403)
T ss_pred             HHHHHHHHHHhcccccccccCCccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9                             7889999999999999999999999999864

The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.

>PRK10666 ammonium transporter; Provisional

Probab=99.94  E-value=5.8e-27  Score=187.66  Aligned_cols=103  Identities=15%  Similarity=0.002  Sum_probs=96.9

Q ss_pred             CchhhHHHHHhcCcCchhhhhccc--------ccCCCCChHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCcccccccch
Q 048011            1 MITRGLLENLRCLKWGAWRGCRNR--------IGLSVVEPWAAMVCLYFAPWVLIGLNILAI-KLNFDDPLEGTRLHGGS   71 (104)
Q Consensus         1 ~~t~~~~~~~~~~k~~~~~~~nG~--------a~~~~v~p~~A~iiG~iag~~~~~~~~~~~-~~~iDD~vda~~vHg~~   71 (104)
                      +++|++.+++++||+|+..++||+        |+|++++||+|+++|+++|++|++..+.++ |+|||||+|++|+||+|
T Consensus       264 ~l~~~~~~~~~~gk~~~~~~~nG~LaGLVaITa~a~~v~p~~A~iiG~vag~v~~~~~~~l~~~~~iDD~~~a~~vHgv~  343 (428)
T PRK10666        264 ILGWVFGEWALRGKPSLLGACSGAIAGLVGVTPACGYVGVGGALIIGVVAGLAGLWGVTMLKRWLRVDDPCDVFGVHGVC  343 (428)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCccHhhhHh
Confidence            368999999999999999999999        999999999999999999999999887666 58999999999999999


Q ss_pred             h----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 048011           72 G----------------------------FIGSQVTELSVIVGWVRETMGPLLVCFMPFI  103 (104)
Q Consensus        72 G----------------------------~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~~  103 (104)
                      |                            |++.|++|++++..|+++.|+++++++|++.
T Consensus       344 Gi~G~l~~glfa~~~~~~~~~~~g~~~~~ql~~Ql~g~~~~~~~~~~~t~ii~~il~~~~  403 (428)
T PRK10666        344 GIVGCILTGIFAASSLGGVGYAEGVTMGHQVLVQLESIAITIVWSGVVAFIGYKLADLTV  403 (428)
T ss_pred             HHHHHHHHHHhhchhccCccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9                            6889999999999999999999999999864

>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix

Probab=99.93  E-value=3.2e-26  Score=181.30  Aligned_cols=102  Identities=25%  Similarity=0.348  Sum_probs=94.3

Q ss_pred             chhhHHHHHhcCcCchhhhhccc--------ccCCCCChHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCcccccccchh
Q 048011            2 ITRGLLENLRCLKWGAWRGCRNR--------IGLSVVEPWAAMVCLYFAPWVLIGLNI-LAIKLNFDDPLEGTRLHGGSG   72 (104)
Q Consensus         2 ~t~~~~~~~~~~k~~~~~~~nG~--------a~~~~v~p~~A~iiG~iag~~~~~~~~-~~~~~~iDD~vda~~vHg~~G   72 (104)
                      ++|++++++++||+|+..++||+        |+|++++||+|+++|+++|.++++..+ +++|+|||||+|++|+||+||
T Consensus       236 l~~~~~~~~~~gk~~~~~~~nG~laGlVaita~~~~v~p~~A~~iG~iag~i~~~~~~~l~~~~~iDD~~~~~~vHg~~G  315 (399)
T PF00909_consen  236 LTWLLISYLLSGKWSMVGICNGALAGLVAITAGAGYVTPWGALLIGAIAGLISYFGVSWLLKRLKIDDPVGAFAVHGVGG  315 (399)
T ss_dssp             HHHHHHHHHHCSS--HHHHHHHHHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HTTGHHHHCHHHH
T ss_pred             HHHHHhhhccccccchhhhhhhhhhhhhheecccCCCcHHHHHHhhhhHhhhhhhheecccceeEeccccceEeeeeccH
Confidence            68999999999999999999999        999999999999999999999999997 889999999999999999999


Q ss_pred             ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 048011           73 ------------------------------FIGSQVTELSVIVGWVRETMGPLLVCFMPFI  103 (104)
Q Consensus        73 ------------------------------~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~~  103 (104)
                                                    |++.|++|++++..|++..|+++++++|++.
T Consensus       316 i~G~i~~glfa~~~~~~~~~~~~~~~~~~~~l~~Ql~g~~~~~~~~~~~s~i~~~~l~~~~  376 (399)
T PF00909_consen  316 IWGTILTGLFASPEVNYSDGYGGLFYGNGRQLGIQLLGIVVILAWSFVVSYIIFKILKKFG  376 (399)
T ss_dssp             HHHHHHHHHHCCCHHCSS-SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhccccccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                                          6999999999999999999999999999874

It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....

>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=97.86  E-value=2.7e-05  Score=62.36  Aligned_cols=90  Identities=18%  Similarity=-0.008  Sum_probs=72.4

Q ss_pred             hcCcCchhhhhccc--------ccCC-CCChHHHHHHHHHHHHHHHHHHHHH-----HHhcCCCCCcccccccchh----
Q 048011           11 RCLKWGAWRGCRNR--------IGLS-VVEPWAAMVCLYFAPWVLIGLNILA-----IKLNFDDPLEGTRLHGGSG----   72 (104)
Q Consensus        11 ~~~k~~~~~~~nG~--------a~~~-~v~p~~A~iiG~iag~~~~~~~~~~-----~~~~iDD~vda~~vHg~~G----   72 (104)
                      .+||.|....-|-.        .+|+ ..+||.|+++|.+||.+.....+.+     +|+||-|.+++=-.||..|    
T Consensus       268 ~~gkldMvhIqnatLAGGVAVGTsa~~~l~P~~AmiiG~iAG~vSvlG~kyltp~l~~~l~i~dtcgv~nlhgmpg~l~~  347 (442)
T KOG3796|consen  268 PQGKLDMVHIQNATLAGGVAVGTSANLILSPYGAMIIGLIAGLVSVLGYKYLTPFLERKLGIHDTCGVHNLHGMPGLLGG  347 (442)
T ss_pred             ccCccceEEeecchhcCceeeccchhcccCcHHHHHHHHHHHHHhhccceeechhhcccccccccccccccccchHHHHH
Confidence            36788888877766        4455 5689999999999999987666543     5789999999999999999    


Q ss_pred             ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048011           73 ------------------------------------FIGSQVTELSVIVGWVRETMGPLLVCFM  100 (104)
Q Consensus        73 ------------------------------------~l~~Ql~g~~~i~~w~~~~s~~i~~~l~  100 (104)
                                                          |-..|+.|+.++..-+....++.=.+||
T Consensus       348 ~~~i~~a~~~t~e~yg~~l~~ifp~~~gng~~~~~sQa~~Ql~gl~~~l~~A~~gGlLtGllLk  411 (442)
T KOG3796|consen  348 IASIVFAVLATPESYGKGLYHIFPMIGGNGHGMATSQALYQLFGLLVTLVIALVGGLLTGLLLK  411 (442)
T ss_pred             HHHHHHHhhcchhhcccccccccceecCCCccchhHHHHHHHHHHHHHHHHHHHhhhhhhheee
Confidence                                                7889999999888887776666555555

>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes

Probab=81.11  E-value=19  Score=26.24  Aligned_cols=70  Identities=13%  Similarity=0.032  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCC-----CcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 048011           34 AAMVCLYFAPWVLIGLNILAIKLNFDDP-----LEGTRLHGGSGFIGSQVTELSVIVGWVRETMGPLLVCFMPFI  103 (104)
Q Consensus        34 ~A~iiG~iag~~~~~~~~~~~~~~iDD~-----vda~~vHg~~G~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~~  103 (104)
                      -++.+|+.||++--....+.+.++.-..     ++-|..|-.=-...-|++|++++.+.|.+.+++...++||+-
T Consensus        22 ~~~~iGf~gGliWs~v~yl~y~f~FT~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAllY~~~l~k~~   96 (173)
T PF11085_consen   22 KVLEIGFFGGLIWSLVRYLAYFFHFTEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALLYYALLKKFK   96 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4678999999886666666555554322     111222221114556899999999999999999999999863

Their function is not known.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	104
1u7g_A	385	Probable ammonium transporter; right handed helica	99.95
2b2h_A	399	AMT-1, ammonium transporter; membrane protein, tra	99.94
3b9w_A	407	Ammonium transporter family; membrane protein, amm	99.92
3hd6_A	490	Ammonium transporter RH type C; ammonia, channel,	99.91

>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A

Probab=99.95  E-value=5.2e-28  Score=190.46  Aligned_cols=102  Identities=14%  Similarity=-0.020  Sum_probs=97.3

Q ss_pred             chhhHHHHHhcCcCchhhhhccc--------ccCCCCChHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCcccccccchh
Q 048011            2 ITRGLLENLRCLKWGAWRGCRNR--------IGLSVVEPWAAMVCLYFAPWVLIGLNI-LAIKLNFDDPLEGTRLHGGSG   72 (104)
Q Consensus         2 ~t~~~~~~~~~~k~~~~~~~nG~--------a~~~~v~p~~A~iiG~iag~~~~~~~~-~~~~~~iDD~vda~~vHg~~G   72 (104)
                      ++|++++|+++||+|+.+++||+        |+|++++||+|++||+++|++|++..+ +++|+|||||+|++|+||+||
T Consensus       243 l~~~~~~~~~~gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~iDD~l~a~~vHgv~G  322 (385)
T 1u7g_A          243 LGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCG  322 (385)
T ss_dssp             HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHhhhhhccCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCCCCEeeccccc
Confidence            68999999999999999999999        999999999999999999999999998 567899999999999999999


Q ss_pred             ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 048011           73 ----------------------------FIGSQVTELSVIVGWVRETMGPLLVCFMPFI  103 (104)
Q Consensus        73 ----------------------------~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~~  103 (104)
                                                  |++.|++|++++.+|+++.++++++++|++.
T Consensus       323 i~G~l~~glfa~~~~~g~~~~~G~~~g~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~~~  381 (385)
T 1u7g_A          323 IVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTV  381 (385)
T ss_dssp             HHHHHHHHHHTSGGGTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccccccCccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence                                        6789999999999999999999999999874

>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A

Probab=99.94  E-value=1.5e-27  Score=188.61  Aligned_cols=101  Identities=17%  Similarity=0.080  Sum_probs=97.2

Q ss_pred             chhhHHHHHhcCcCchhhhhccc--------ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchh-
Q 048011            2 ITRGLLENLRCLKWGAWRGCRNR--------IGLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSG-   72 (104)
Q Consensus         2 ~t~~~~~~~~~~k~~~~~~~nG~--------a~~~~v~p~~A~iiG~iag~~~~~~~~~~~~~~iDD~vda~~vHg~~G-   72 (104)
                      ++|++++|++ ||+|+..++||+        |+|++++||+|++||+++|++|++..++++|+|||||+|++++||+|| 
T Consensus       232 l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~l~~kl~iDD~l~a~~vHgv~Gi  310 (399)
T 2b2h_A          232 FVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMDFRIKKKIDESLDAWAIHGIGGL  310 (399)
T ss_dssp             HHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceeccchhhH
Confidence            6899999999 999999999999        999999999999999999999999999899999999999999999999 


Q ss_pred             --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 048011           73 --------------------------FIGSQVTELSVIVGWVRETMGPLLVCFMPFI  103 (104)
Q Consensus        73 --------------------------~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~~  103 (104)
                                                |++.|++|++++.+|+++.++++++++|++.
T Consensus       311 ~G~l~~glfa~~~~~g~~Gl~~g~~~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~~~  367 (399)
T 2b2h_A          311 WGSVAVGILANPEVNGYAGLLFGNPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAV  367 (399)
T ss_dssp             HHHHHHHHHCCHHHHSCCCGGGTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccccccCCCccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                                      6889999999999999999999999999864

>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*

Probab=99.92  E-value=2.8e-25  Score=175.92  Aligned_cols=100  Identities=16%  Similarity=0.045  Sum_probs=92.0

Q ss_pred             chhhHHHHH-hcCcCchhhhhccc--------ccCCCCChHHHHHHHHHHHHHHHHHHHH-----HHHhcCCCCCccccc
Q 048011            2 ITRGLLENL-RCLKWGAWRGCRNR--------IGLSVVEPWAAMVCLYFAPWVLIGLNIL-----AIKLNFDDPLEGTRL   67 (104)
Q Consensus         2 ~t~~~~~~~-~~~k~~~~~~~nG~--------a~~~~v~p~~A~iiG~iag~~~~~~~~~-----~~~~~iDD~vda~~v   67 (104)
                      ++|++++++ ++||+|+..++||+        |+|++++||+|++||+++|++|++..+.     ++|+|||||+|++++
T Consensus       220 l~~~~~~~~~~~gK~~~~~~~nG~LAGLVAITa~~~~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~v  299 (407)
T 3b9w_A          220 LATYFLSALFHKGKASIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNL  299 (407)
T ss_dssp             HHHHHHHHHHTTTCCCHHHHHHHTTHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHhhhhhhheeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeec
Confidence            689999998 89999999999999        9999999999999999999999988863     457899999999999


Q ss_pred             ccchhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048011           68 HGGSGFIG-------------SQVTELSVIVGWVRETMGPLLVCFMP  101 (104)
Q Consensus        68 Hg~~G~l~-------------~Ql~g~~~i~~w~~~~s~~i~~~l~~  101 (104)
                      ||+||.+|             .|++|++++.+|+++.++++++++|+
T Consensus       300 Hgv~Gi~G~l~~glfa~~~~~~Ql~g~~~~~~~s~v~~~i~~~il~~  346 (407)
T 3b9w_A          300 HGLPGLLGGFSAILIVPGIAVAQLTGIGITLALALIGGVIAGALIKL  346 (407)
T ss_dssp             TTHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999221             59999999999999999999999997

>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}

Probab=99.91  E-value=2.6e-24  Score=173.52  Aligned_cols=102  Identities=14%  Similarity=0.023  Sum_probs=93.2

Q ss_pred             chhhHHHHH--hcCcCchhhhhccc--------ccCC-CCChHHHHHHHHHHHHHHHHHHH-----HHHHhcCCCCCccc
Q 048011            2 ITRGLLENL--RCLKWGAWRGCRNR--------IGLS-VVEPWAAMVCLYFAPWVLIGLNI-----LAIKLNFDDPLEGT   65 (104)
Q Consensus         2 ~t~~~~~~~--~~~k~~~~~~~nG~--------a~~~-~v~p~~A~iiG~iag~~~~~~~~-----~~~~~~iDD~vda~   65 (104)
                      ++|++++++  ++||+|+..++||+        |+|+ +++||+|++||+++|++|+++.+     +++|+|||||+|++
T Consensus       267 lt~~~~s~l~~~~gK~s~~~~~nG~LAGLVAIT~~a~~~v~P~~AliIG~iaG~i~~~~~~~l~~~l~~kl~iDD~lgv~  346 (490)
T 3hd6_A          267 LTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGIN  346 (490)
T ss_dssp             HHHHHHHHHTSTTCCCCHHHHHHGGGHHHHHTTTTTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCHH
T ss_pred             HHHHHHHHHHHhcCCCCHHHhhhceeeeEEEEccCcccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHCCCCccccch
Confidence            689999986  68999999999999        8998 69999999999999999998876     44789999999999


Q ss_pred             ccccchh-----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 048011           66 RLHGGSG-----------------------------------------FIGSQVTELSVIVGWVRETMGPLLVCFMPFI  103 (104)
Q Consensus        66 ~vHg~~G-----------------------------------------~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~~  103 (104)
                      ++||+||                                         |++.|++|++++.+|+++.++++++++|+..
T Consensus       347 ~vHGv~Gi~G~l~~glfa~~~~~~~~g~~Gl~~~f~~~~~~gg~~~~~ql~~Ql~gv~~~~~~a~v~~~ii~~iLk~~~  425 (490)
T 3hd6_A          347 NLHGIPGIIGGIVGAVTAASASLEVYGKEGLVHSFDFQGFNGDWTARTQGKFQIYGLLVTLAMALMGGIIVGLILRLPF  425 (490)
T ss_dssp             HHTHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred             HHhhHHHHHHHHHHHHHhccccccccccCcceeccccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999998                                         2468999999999999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	104
d1u7ga_	383	Ammonium transporter AmtB {Escherichia coli [TaxId	99.93
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	81.35

>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=6.4e-27  Score=182.11  Aligned_cols=102  Identities=13%  Similarity=-0.026  Sum_probs=97.3

Q ss_pred             chhhHHHHHhcCcCchhhhhccc--------ccCCCCChHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCcccccccchh
Q 048011            2 ITRGLLENLRCLKWGAWRGCRNR--------IGLSVVEPWAAMVCLYFAPWVLIGLNILA-IKLNFDDPLEGTRLHGGSG   72 (104)
Q Consensus         2 ~t~~~~~~~~~~k~~~~~~~nG~--------a~~~~v~p~~A~iiG~iag~~~~~~~~~~-~~~~iDD~vda~~vHg~~G   72 (104)
                      ++|++.+++++||+|+..++||.        |+|++++||+|++||++++.+|+...+++ +|+|||||+|++|+||+||
T Consensus       241 ~~~~~~~~~~~~k~~~~~~~nG~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~G  320 (383)
T d1u7ga_         241 LGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCG  320 (383)
T ss_dssp             HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHhhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhcccccccceEeehhhhH
Confidence            57889999999999999999998        99999999999999999999999998876 5799999999999999999


Q ss_pred             ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 048011           73 ----------------------------FIGSQVTELSVIVGWVRETMGPLLVCFMPFI  103 (104)
Q Consensus        73 ----------------------------~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~~  103 (104)
                                                  |+++|++|++++.+|+++.++++++++|++.
T Consensus       321 i~G~l~~glfa~~~~~g~~~~~~~~~~~ql~~Ql~g~~v~~~~~~~~~~ii~~il~~~~  379 (383)
T d1u7ga_         321 IVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTV  379 (383)
T ss_dssp             HHHHHHHHHHTSGGGTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence                                        8999999999999999999999999999874

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=81.35  E-value=2.6  Score=23.92  Aligned_cols=47  Identities=13%  Similarity=0.028  Sum_probs=30.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchh---HHHHHH
Q 048011           31 EPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSG---FIGSQV   78 (104)
Q Consensus        31 ~p~~A~iiG~iag~~~~~~~~~~~~~~iDD~vda~~vHg~~G---~l~~Ql   78 (104)
                      ++-+|..+| .+|+..+.+..-+++...-+|=+-+-|||.+|   .+.+|+
T Consensus         2 s~~eAa~lg-~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQl   51 (77)
T d1o8ca2           2 DARKAMIIG-TAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVAL   51 (77)
T ss_dssp             CHHHHHHHH-HHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHH
T ss_pred             CHHHHHHhh-hHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHH
Confidence            567788887 56665544444344444445666688888877   666675