Citrus Sinensis ID: 048021

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MFSSSSSSAKMTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKLLRKLQSGKYANLCWVSAGNQITYGNAYHEGMQMQSPYAYNTRQLQPPGYWHDHHYDHPMLHYYPQPRHTMAAYPYHHDYHHWL
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEcccHHHHHHHHHHHcccccEEEEEEccccEEEEEEEccHHHHHHHHHccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEEcccccHHHHHHHHHHHHccccEEEEEccccEEEEEccccHHHHHHHHHccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccc
Coil and Loop (DISEMBL)
mfssssssakmtcglkvdtndpawfSSMTKVLRKIKGasytidaeegmayitgRANPRKLLRKLqsgkyanlcwvsagnqitygnayhegmqmqspyayntrqlqppgywhdhhydhpmlhyypqprhtmaaypyhhdyhhwl
Flexible Loop (DISEMBL)
mfssssssakmtcglkvdtndpawFSSMTKVLRKIKGAsytidaeegmayitGRANPRKLLRKLQSGKYANLCWVSAGNQITYGNAYHEGMQMQSPYAYNTRQLQPPGYWHDHHYDHPMLHYYPQPRHTMAAYPYHHDYHHWL
Low Complexity Region (SEG)
MFssssssAKMTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKLLRKLQSGKYANLCWVSAGNQITYGNAYHEGMQMQSPYAYNTRQLQPPGYWHDHHYDHPMLHYYPQPRHTMAAYPYHHDYHHWL
Disordered region (IsUnstruct)
************CGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKLLRKLQSGKYANLCWVSAGNQITYGNAYHEGMQMQSPYAYNTRQLQPPGYWHDHHYDHPMLHYYPQPRHTMAAYPYHHDYHHW*
Disordered Region (DISOPRED)
*************GLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKLLRKLQSGKYANLCWVS*********************************************************PYHH****W*
Disordered Region (DISEMBL)
************CGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKLLRKLQSGKYANLCWVSAGNQITYGNAYHEGMQMQSPYAYNTRQLQPPGYWHDHHYDHPMLHYYPQPRHTMAAYPYHHDYHHWL
Disordered Region (DISPRO)
********AKMTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKLLRKLQSGKYANLCWVSAGNQITYGNAYHEGMQMQSPYAYNTRQLQPPGYWHDHHYDHPMLHYYPQPRHTMAAYPYHHDYHHWL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFSSSSSSAKMTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKLLRKLQSGKYANLCWVSAGNQITYGNAYHEGMQMQSPYAYNTRQLQPPGYWHDHHYDHPMLHYYPQPRHTMAAYPYHHDYHHWL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
224065697	143	predicted protein [Populus trichocarpa]	0.790	0.790	0.460	2e-20
297794377	147	metal ion binding protein [Arabidopsis l	0.895	0.870	0.394	1e-16
357463701	139	hypothetical protein MTR_3g089950 [Medic	0.594	0.611	0.477	2e-16
297816362	137	metal ion binding protein [Arabidopsis l	0.853	0.890	0.415	4e-16
15239362	150	uncharacterized protein [Arabidopsis tha	0.930	0.886	0.374	2e-15
10177518	130	unnamed protein product [Arabidopsis tha	0.545	0.6	0.462	1e-14
15230384	133	uncharacterized protein [Arabidopsis tha	0.545	0.586	0.525	3e-13
116831283	134	unknown [Arabidopsis thaliana]	0.552	0.589	0.518	4e-13
224081507	188	predicted protein [Populus trichocarpa]	0.531	0.404	0.454	2e-11
357438031	89	hypothetical protein MTR_1g021540 [Medic	0.482	0.775	0.4	1e-08

>gi|224065697|ref|XP_002301926.1| predicted protein [Populus trichocarpa] gi|222843652|gb|EEE81199.1| predicted protein [Populus trichocarpa]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/126 (46%), Positives = 78/126 (61%), Gaps = 13/126 (10%)

Query: 4   SSSSSAKMTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKLLRK 63
           +S  ++ M+CGLKV+T DP W  ++TKVL++IKG SY ID E+GMAYI GR +P KLL+K
Sbjct: 2   ASHLNSNMSCGLKVETKDPEWHRTLTKVLKRIKGVSYAIDVEQGMAYIRGRVDPNKLLKK 61

Query: 64  L-QSGKYANLCWVSAGNQITYGNAYHEGMQMQSPYAYNTRQL--QP-PGYWHDHHYDHPM 119
           L + GK+A++CWV  GN   Y         M + Y Y  R    QP P Y   +H  + M
Sbjct: 62  LSKGGKHADICWVETGNMNPY---------MNNGYQYPPRGGYHQPGPAYHQGYHPGYAM 112

Query: 120 LHYYPQ 125
             YYP+
Sbjct: 113 PSYYPK 118

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794377|ref|XP_002865073.1| metal ion binding protein [Arabidopsis lyrata subsp. lyrata] gi|297310908|gb|EFH41332.1| metal ion binding protein [Arabidopsis lyrata subsp. lyrata]

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 82/147 (55%), Gaps = 19/147 (12%)

Query: 1   MFSSSSSSAKMTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKL 60
           MFSS++ S ++TCG KV+TN P W  SMT++L+KIKG  + +D ++G+AYI+G  +P KL
Sbjct: 1   MFSSNNRSTQLTCGFKVNTNSPEWHKSMTRILKKIKGGDFLLDVDQGLAYISGEGDPHKL 60

Query: 61  LRKLQS--GKYANLCWVSAGNQ--ITYGNAYHEGMQMQSPYAYNTRQLQPP---GYW-HD 112
           L+ + S  GK A + +V  G +    Y N  H        Y  N+    PP    YW  D
Sbjct: 61  LKLMGSIKGKAAEMTFVKTGGRQHPHYPNLLH--------YNSNSYYGHPPSYNSYWPSD 112

Query: 113 HHYDHPMLHYYPQPRHTMAAYPYHHDY 139
           + Y      YY Q   ++A  PYHH Y
Sbjct: 113 NCYSRQHPPYYSQ---SLAMQPYHHQY 136

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463701|ref|XP_003602132.1| hypothetical protein MTR_3g089950 [Medicago truncatula] gi|355491180|gb|AES72383.1| hypothetical protein MTR_3g089950 [Medicago truncatula]

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 1  MFSSSSSSAK--MTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPR 58
           FS      K  MTC LKVDTN   W  + TK+L KIKG +Y  D  EGM YI+G+A+P+
Sbjct: 2  FFSKKQEGIKSHMTCALKVDTNTKKWSETTTKILEKIKGVNYNFDTNEGMIYISGKADPQ 61

Query: 59 KLLRKL-QSGKYANLCWVSAGNQITYGN 85
          K+L+++ +  K   LCWV  G Q +YGN
Sbjct: 62 KILKRIAKHQKKVELCWVRTGEQYSYGN 89

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816362|ref|XP_002876064.1| metal ion binding protein [Arabidopsis lyrata subsp. lyrata] gi|297321902|gb|EFH52323.1| metal ion binding protein [Arabidopsis lyrata subsp. lyrata]

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/142 (41%), Positives = 76/142 (53%), Gaps = 20/142 (14%)

Query: 1   MFSSSS-SSAKMTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRK 59
           MFSSS   S  +TCG KV+TN P W  SMTK+L+KIKG ++ ID +EGMAY+TG+ +P K
Sbjct: 1   MFSSSRPGSTSLTCGFKVNTNSPEWHKSMTKILKKIKGGNFWIDVDEGMAYVTGQGDPNK 60

Query: 60  LLRKLQS--GKYANLCWVSAGNQITYGNAYHEGMQMQSPYAYNTRQLQPPGYWHDHHYDH 117
           LL+ + S  GK A + +V  G      + +H+      P  YN  Q    G W       
Sbjct: 61  LLKLMGSKRGKDAEMAFVRTGTHHPQHHHHHD------PNFYNNCQNSYFGQWPG----- 109

Query: 118 PMLHYYPQPRHTMAAYPYHHDY 139
               YYP     M   PYHH Y
Sbjct: 110 ----YYPPAGSAMQ--PYHHQY 125

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239362|ref|NP_201438.1| uncharacterized protein [Arabidopsis thaliana] gi|332010822|gb|AED98205.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 81/147 (55%), Gaps = 14/147 (9%)

Query: 1   MFSSSSSSAKMTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKL 60
           MFSS++ S ++TCG KV+TN   W+ S+T++L+K+KG  + +DA+EG AYI+G  +P KL
Sbjct: 1   MFSSNNRSTQLTCGFKVNTNSSEWYKSITRILKKVKGGDFLLDADEGRAYISGLGDPHKL 60

Query: 61  LRKLQS--GKYANLCWVSAGNQITYGNAYHEGMQMQSPYAYNTRQL--QPP---GYW-HD 112
           L+ + S  GK A + +V  G        +      +    YN+     QPP    YW  D
Sbjct: 61  LKLMGSVKGKAAEMTFVKTGGHHH---HHQHHYPHEPNLHYNSDSYYGQPPSYNSYWPSD 117

Query: 113 HHYDHPMLHYYPQPRHTMAAYPYHHDY 139
           + Y      YY Q   ++A  PYHH Y
Sbjct: 118 NCYSRQHPPYYSQ---SLAMQPYHHQY 141

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177518|dbj|BAB10913.1| unnamed protein product [Arabidopsis thaliana]

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)

Query: 1  MFSSSSSSAKMTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKL 60
          MFSS++ S ++TCG KV+TN   W+ S+T++L+K+KG  + +DA+EG AYI+G  +P KL
Sbjct: 1  MFSSNNRSTQLTCGFKVNTNSSEWYKSITRILKKVKGGDFLLDADEGRAYISGLGDPHKL 60

Query: 61 LRKLQS--GKYANLCWVSAG 78
          L+ + S  GK A + +V  G
Sbjct: 61 LKLMGSVKGKAAEMTFVKTG 80

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230384|ref|NP_190671.1| uncharacterized protein [Arabidopsis thaliana] gi|6562254|emb|CAB62624.1| hypothetical protein [Arabidopsis thaliana] gi|91806560|gb|ABE66007.1| hypothetical protein At3g51020 [Arabidopsis thaliana] gi|332645217|gb|AEE78738.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 57/80 (71%), Gaps = 2/80 (2%)

Query: 1  MFSSSSSSAKMTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKL 60
          MFSSS +S  +TCG KV+T+ P W  SMTK+L+KIKG ++ ID +EGMAY+TG  +P KL
Sbjct: 1  MFSSSRTSTSLTCGFKVNTSSPEWHKSMTKILKKIKGGNFWIDVDEGMAYVTGHGDPNKL 60

Query: 61 LRKLQS--GKYANLCWVSAG 78
          L+ + S  GK A + +V  G
Sbjct: 61 LKLMGSKRGKDAEMAFVKTG 80

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831283|gb|ABK28595.1| unknown [Arabidopsis thaliana]

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 57/81 (70%), Gaps = 2/81 (2%)

Query: 1  MFSSSSSSAKMTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKL 60
          MFSSS +S  +TCG KV+T+ P W  SMTK+L+KIKG ++ ID +EGMAY+TG  +P KL
Sbjct: 1  MFSSSRTSTSLTCGFKVNTSSPEWHKSMTKILKKIKGGNFWIDVDEGMAYVTGHGDPNKL 60

Query: 61 LRKLQS--GKYANLCWVSAGN 79
          L+ + S  GK A + +V  G 
Sbjct: 61 LKLMGSKRGKDAEMAFVKTGT 81

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081507|ref|XP_002306439.1| predicted protein [Populus trichocarpa] gi|222855888|gb|EEE93435.1| predicted protein [Populus trichocarpa]

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 12  TCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKLLRKL-QSGKYA 70
            C L+VDT  P W  ++ KVL+ I+G S+TIDA  G A ++G  NP KLL  L ++GK+A
Sbjct: 25  VCELQVDTQSPGWQKTLCKVLKGIQGVSFTIDASRGRARVSGEVNPNKLLLILAKAGKHA 84

Query: 71  NLCWVSAGNQITYGNAY 87
            L WV  GN  +   +Y
Sbjct: 85  ELIWVHHGNSQSNAQSY 101

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438031|ref|XP_003589291.1| hypothetical protein MTR_1g021540 [Medicago truncatula] gi|355478339|gb|AES59542.1| hypothetical protein MTR_1g021540 [Medicago truncatula]

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 9  AKMTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKLLRKL-QSG 67
          + M C LKVDT    WF ++ K+LRKIKG S   D  + + YI+G+ + +K LR + Q+ 
Sbjct: 8  SNMICALKVDTYYDGWFQTIFKILRKIKGLSCNFDTTKEIIYISGKVDSQKFLRMIAQNE 67

Query: 68 KYANLCWVSA 77
          K   +CW++ 
Sbjct: 68 KTVEVCWITV 77

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2154900	150	AT5G66370 "AT5G66370" [Arabido	0.944	0.9	0.358	2.7e-20
TAIR|locus:2080953	133	AT3G51020 "AT3G51020" [Arabido	0.895	0.962	0.375	1.2e-19
TAIR|locus:2082425	473	AT3G06130 [Arabidopsis thalian	0.566	0.171	0.352	1e-08
TAIR|locus:2179604	587	AT5G19090 [Arabidopsis thalian	0.433	0.105	0.4	1.7e-07
TAIR|locus:2096204	577	AT3G05220 [Arabidopsis thalian	0.426	0.105	0.380	4e-05
UNIPROTKB|C9JN33	212	CREB5 "Cyclic AMP-responsive e	0.461	0.311	0.310	0.00011
MGI|MGI:2443973	357	Creb5 "cAMP responsive element	0.461	0.184	0.310	0.00012
UNIPROTKB|F1NCD2	507	CREB5 "Uncharacterized protein	0.461	0.130	0.310	0.00013
UNIPROTKB|Q02930	508	CREB5 "Cyclic AMP-responsive e	0.461	0.129	0.310	0.00053
TAIR|locus:2153794	262	AT5G37860 "AT5G37860" [Arabido	0.741	0.404	0.278	0.00076

TAIR|locus:2154900 AT5G66370 "AT5G66370" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 52/145 (35%), Positives = 79/145 (54%)

Query:     1 MFXXXXXXAKMTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKL 60
             MF       ++TCG KV+TN   W+ S+T++L+K+KG  + +DA+EG AYI+G  +P KL
Sbjct:     1 MFSSNNRSTQLTCGFKVNTNSSEWYKSITRILKKVKGGDFLLDADEGRAYISGLGDPHKL 60

Query:    61 LRKLQS--GKYANLCWVSAGNQITYGNAYHEGMQMQSPYAYNTRQLQPPGY---W-HDHH 114
             L+ + S  GK A + +V  G    + + +H   +    Y  ++   QPP Y   W  D+ 
Sbjct:    61 LKLMGSVKGKAAEMTFVKTGGH-HHHHQHHYPHEPNLHYNSDSYYGQPPSYNSYWPSDNC 119

Query:   115 YDHPMLHYYPQPRHTMAAYPYHHDY 139
             Y      YY Q   ++A  PYHH Y
Sbjct:   120 YSRQHPPYYSQ---SLAMQPYHHQY 141

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080953 AT3G51020 "AT3G51020" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 54/144 (37%), Positives = 77/144 (53%)

Query:     1 MFXXXXXXAKMTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKL 60
             MF        +TCG KV+T+ P W  SMTK+L+KIKG ++ ID +EGMAY+TG  +P KL
Sbjct:     1 MFSSSRTSTSLTCGFKVNTSSPEWHKSMTKILKKIKGGNFWIDVDEGMAYVTGHGDPNKL 60

Query:    61 LRKLQS--GKYANLCWVSAGNQITYGNAYHEGMQMQSPYAYNTRQLQPPGYWHDHHYDHP 118
             L+ + S  GK A + +V  G Q      +H+      P  Y+  Q   PG W  ++   P
Sbjct:    61 LKLMGSKRGKDAEMAFVKTGTQ------HHQHHHHHDPSFYS--QSSYPGQWGGYY---P 109

Query:   119 MLHYYPQPRHTMAAYPYHHDYHHW 142
             +     QP H    YPY   Y+++
Sbjct:   110 VGSTM-QPYHQQ--YPYSGGYNNY 130

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2082425 AT3G06130 [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
 Identities = 31/88 (35%), Positives = 50/88 (56%)

Query:    12 TCGLKVDTNDPAWFSSMTKVLRKIKGASYT-IDAEEGMAYITGRANPRKLLRKL-QSGKY 69
             TC LKV+ +       + K+L+KI+G   T ID+E+G   ++G  +P  L++KL +SGK+
Sbjct:    11 TCVLKVNIHCDGCKQKVKKILQKIEGVFTTKIDSEQGKVTVSGSVDPSVLIKKLAKSGKH 70

Query:    70 ANLCWVSAGN----QITYGNAYHEGMQM 93
             A +     GN    Q    N + +GMQ+
Sbjct:    71 AEIWGAPKGNNNPNQSQMANQF-KGMQI 97

GO:0005737 "cytoplasm" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

TAIR|locus:2179604 AT5G19090 [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
 Identities = 26/65 (40%), Positives = 40/65 (61%)

Query:    12 TCGLKVDTNDPAWFSSMTKVLRKIKGASYT-IDAEEGMAYITGRANPRKLLRKL-QSGKY 69
             TC LKV+ +       + K+L+KI+G   T IDAE G   ++G  +P  L++KL +SGK+
Sbjct:    11 TCVLKVNIHCDGCKQKVKKILQKIEGVFTTKIDAELGKVTVSGNVDPSVLIKKLLKSGKH 70

Query:    70 ANLCW 74
             A + W
Sbjct:    71 AEI-W 74

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2096204 AT3G05220 [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query:    12 TCGLKVDTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKL-QSGKY 69
             TC LKV+ +       + K L+KI+G  S   D E+G   +TG  +P  L++KL +SGK+
Sbjct:    11 TCVLKVNVHCEGCKHKVKKQLQKIEGVYSVKADVEQGRVTVTGNIDPALLVKKLSKSGKH 70

Query:    70 ANL 72
             A +
Sbjct:    71 AEI 73

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|C9JN33 CREB5 "Cyclic AMP-responsive element-binding protein 5" [Homo sapiens (taxid:9606)]

 Score = 99 (39.9 bits), Expect = 0.00011, P = 0.00011
 Identities = 23/74 (31%), Positives = 36/74 (48%)

Query:    75 VSAGNQITYGNAYHE--GMQMQSPYAY-----NTRQLQPPGYWHDHHYDHPMLHYYPQPR 127
             +S GN  T G+        Q Q+P+ +     +  Q  PP + + H + HP  H +PQP 
Sbjct:    73 MSNGNMNTMGHMMEMMGSRQDQTPHHHMHSHPHQHQTLPPHHPYPHQHQHPAHHPHPQPH 132

Query:   128 HTMAAYPYHHDYHH 141
             H    +P+HH + H
Sbjct:   133 HQQN-HPHHHSHSH 145

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0060612 "adipose tissue development" evidence=IEA

MGI|MGI:2443973 Creb5 "cAMP responsive element binding protein 5" [Mus musculus (taxid:10090)]

 Score = 100 (40.3 bits), Expect = 0.00012, P = 0.00012
 Identities = 23/74 (31%), Positives = 36/74 (48%)

Query:    75 VSAGNQITYGNAYHE--GMQMQSPYAY-----NTRQLQPPGYWHDHHYDHPMLHYYPQPR 127
             +S GN  T G+        Q Q+P+ +     +  Q  PP + + H + HP  H +PQP 
Sbjct:    96 MSNGNMSTIGHMMEMMGSRQDQTPHHHLHSHPHQHQTLPPHHPYPHQHQHPAHHPHPQPH 155

Query:   128 HTMAAYPYHHDYHH 141
             H    +P+HH + H
Sbjct:   156 HQQN-HPHHHSHSH 168

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045444 "fat cell differentiation" evidence=IGI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0060612 "adipose tissue development" evidence=IGI

UNIPROTKB|F1NCD2 CREB5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
 Identities = 23/74 (31%), Positives = 36/74 (48%)

Query:    75 VSAGNQITYGNAYH--EGMQMQSPYAY-----NTRQLQPPGYWHDHHYDHPMLHYYPQPR 127
             +S GN  T G+        Q Q+P+ +     +  Q  PP + + H + HP  H +PQP 
Sbjct:   246 MSNGNMNTMGHMMEMMSSRQDQTPHHHMHSHPHQHQTLPPHHSYPHQHQHPAHHPHPQPH 305

Query:   128 HTMAAYPYHHDYHH 141
             H    +P+HH + H
Sbjct:   306 HQQN-HPHHHSHSH 318

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0060612 "adipose tissue development" evidence=IEA

UNIPROTKB|Q02930 CREB5 "Cyclic AMP-responsive element-binding protein 5" [Homo sapiens (taxid:9606)]

 Score = 99 (39.9 bits), Expect = 0.00053, P = 0.00053
 Identities = 23/74 (31%), Positives = 36/74 (48%)

Query:    75 VSAGNQITYGNAYHE--GMQMQSPYAY-----NTRQLQPPGYWHDHHYDHPMLHYYPQPR 127
             +S GN  T G+        Q Q+P+ +     +  Q  PP + + H + HP  H +PQP 
Sbjct:   247 MSNGNMNTMGHMMEMMGSRQDQTPHHHMHSHPHQHQTLPPHHPYPHQHQHPAHHPHPQPH 306

Query:   128 HTMAAYPYHHDYHH 141
             H    +P+HH + H
Sbjct:   307 HQQN-HPHHHSHSH 319

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0060612 "adipose tissue development" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IC

GO:0005515 "protein binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

TAIR|locus:2153794 AT5G37860 "AT5G37860" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00076, P = 0.00076
 Identities = 32/115 (27%), Positives = 54/115 (46%)

Query:    15 LKVDTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANL 72
             LKV+ N       + K LRKI+G  S  ID ++    + G  +P  L++KL   GK+A L
Sbjct:    14 LKVNINCQGCKMKVKKTLRKIEGVYSVDIDTDQEAVIVRGNLDPEILVKKLNKRGKHAQL 73

Query:    73 CWVSAGNQITY-GNAY----HEGMQM-QSPYAYNTRQLQPPGYWH-DHHYDHPML 120
              +++  ++  Y GN      H+   +  + Y + +     P Y   +H  D  M+
Sbjct:    74 MFLTPYHKDQYFGNHQAVLNHDNRSLGNTQYNFGSNHNNVPSYERLNHQSDEEMM 128


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.455    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      143       137   0.00091  102 3  11 22  0.41    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  165 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.49u 0.11s 14.60t   Elapsed:  00:00:01
  Total cpu time:  14.49u 0.11s 14.60t   Elapsed:  00:00:01
  Start:  Fri May 10 06:01:24 2013   End:  Fri May 10 06:01:25 2013

GO:0005507 "copper ion binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006825 "copper ion transport" evidence=ISS

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_II000104 hypothetical protein (143 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
KOG1603	73	consensus Copper chaperone [Inorganic ion transpor	99.69
PF00403	62	HMA: Heavy-metal-associated domain; InterPro: IPR0	99.56
COG2608	71	CopZ Copper chaperone [Inorganic ion transport and	99.49
KOG4656	247	consensus Copper chaperone for superoxide dismutas	99.44
PLN02957	238	copper, zinc superoxide dismutase	98.86
PRK10671	834	copA copper exporting ATPase; Provisional	98.65
TIGR00003	68	copper ion binding protein. This model describes a	98.02
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	97.66
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	97.64
PRK10671	834	copA copper exporting ATPase; Provisional	97.38
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	97.23
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	96.71
TIGR02052	92	MerP mercuric transport protein periplasmic compon	94.78
PF05046	87	Img2: Mitochondrial large subunit ribosomal protei	92.48
PF14492	75	EFG_II: Elongation Factor G, domain II; PDB: 1WDT_	92.34
PF02680	95	DUF211: Uncharacterized ArCR, COG1888; InterPro: I	91.9
PRK13748	561	putative mercuric reductase; Provisional	90.81
COG1888	97	Uncharacterized protein conserved in archaea [Func	90.11
PF04972	64	BON: BON domain; InterPro: IPR007055 The BON domai	89.66
cd00371	63	HMA Heavy-metal-associated domain (HMA) is a conse	89.43
PF01883	72	DUF59: Domain of unknown function DUF59; InterPro:	88.86
PF03927	79	NapD: NapD protein; InterPro: IPR005623 This entry	87.74
PF13732	84	DUF4162: Domain of unknown function (DUF4162)	84.51
PRK11023	191	outer membrane lipoprotein; Provisional	83.86
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	83.26
COG1094	194	Predicted RNA-binding protein (contains KH domains	83.05
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	81.71
PRK10553	87	assembly protein for periplasmic nitrate reductase	81.32
PRK11198	147	LysM domain/BON superfamily protein; Provisional	80.35

>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]

Probab=99.69  E-value=1.8e-16  Score=108.17  Aligned_cols=68  Identities=35%  Similarity=0.464  Sum_probs=62.7

Q ss_pred             CCceEEEEEEeecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-C-CceEEeec
Q 048021            8 SAKMTCGLKVDTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-G-KYANLCWV   75 (143)
Q Consensus         8 s~~~tvvlkV~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-G-k~Ael~~~   75 (143)
                      ...++++++|+|+|+||+++|+++|..++|| ++.+|.++++|+|.|.+||..|+++|++ | ++++++..
T Consensus         2 ~~~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~~~   72 (73)
T KOG1603|consen    2 PPIKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELWKV   72 (73)
T ss_pred             CCccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEecC
Confidence            3567899999999999999999999999999 7999999999999999999999999999 6 88877654

>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures

Probab=99.56  E-value=1e-14  Score=94.82  Aligned_cols=56  Identities=21%  Similarity=0.271  Sum_probs=51.9

Q ss_pred             EEEE-eecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeec---CHHHHHHHHhc-CCc
Q 048021           14 GLKV-DTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRA---NPRKLLRKLQS-GKY   69 (143)
Q Consensus        14 vlkV-~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~v---dp~~Ll~aI~k-Gk~   69 (143)
                      +|+| +|+|++|+++|+++|.+++|| ++.+|+++++|+|.+..   ++++|+++|++ ||+
T Consensus         1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~   62 (62)
T PF00403_consen    1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE   62 (62)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred             CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence            6889 699999999999999999999 79999999999999874   56999999999 985

These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....

>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]

Probab=99.49  E-value=1.1e-13  Score=94.12  Aligned_cols=63  Identities=21%  Similarity=0.355  Sum_probs=55.4

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEE--Ee-ecCHHHHHHHHhc-CCceEEe
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYI--TG-RANPRKLLRKLQS-GKYANLC   73 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV--~G-~vdp~~Ll~aI~k-Gk~Ael~   73 (143)
                      ++.+|+|+ |+|++|+++|+++|++++|| +|+||++.++++|  ++ .++.++|+++|++ ||+++.+
T Consensus         2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~~   70 (71)
T COG2608           2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEEI   70 (71)
T ss_pred             ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeeec
Confidence            56889995 89999999999999999999 7999999955555  45 5899999999999 9998754

>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]

Probab=99.44  E-value=3.6e-13  Score=110.09  Aligned_cols=71  Identities=15%  Similarity=0.248  Sum_probs=67.3

Q ss_pred             CCceEEEEEEeecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeecCCC
Q 048021            8 SAKMTCGLKVDTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWVSAG   78 (143)
Q Consensus         8 s~~~tvvlkV~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~~~~   78 (143)
                      ...-+++|.|.|+|++|++.|++.|+.++|| +|+||++++.|.|.+.+++.+|..+|+. |++|.|.+.+.+
T Consensus         4 d~~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~Avl~G~G~p   76 (247)
T KOG4656|consen    4 DDTYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRDAVLRGAGKP   76 (247)
T ss_pred             CCceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHhhChheEEecCCch
Confidence            3667889999999999999999999999999 7999999999999999999999999999 999999999765

>PLN02957 copper, zinc superoxide dismutase

Probab=98.86  E-value=1.7e-08  Score=82.50  Aligned_cols=71  Identities=14%  Similarity=0.251  Sum_probs=65.0

Q ss_pred             CceEEEEEEeecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeecCCCC
Q 048021            9 AKMTCGLKVDTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWVSAGN   79 (143)
Q Consensus         9 ~~~tvvlkV~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~~~~~   79 (143)
                      +.++++|.|.|+|+.|+++|+++|.+++|| .+.+++..++++|.+..++..|+++|++ |+.+++++....+
T Consensus         4 ~~~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~~   76 (238)
T PLN02957          4 PELLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKARLIGQGDPE   76 (238)
T ss_pred             CcEEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCcEEEecCCCcc
Confidence            356778999999999999999999999999 7999999999999988899999999999 9999999987665

>PRK10671 copA copper exporting ATPase; Provisional

Probab=98.65  E-value=5.8e-08  Score=90.95  Aligned_cols=62  Identities=18%  Similarity=0.225  Sum_probs=56.0

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEee
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCW   74 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~   74 (143)
                      ++++|+|+ |+|++|+++|+++|++++|| ++++|++  +++|++..+++.|.++|++ ||++++..
T Consensus         3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~~Gy~~~~~~   67 (834)
T PRK10671          3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIKQAGYDASVSH   67 (834)
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHHhcCCcccccc
Confidence            67899997 89999999999999999999 7999994  5667778899999999999 99999864

>TIGR00003 copper ion binding protein

Probab=98.02  E-value=6.7e-05  Score=44.04  Aligned_cols=60  Identities=10%  Similarity=0.112  Sum_probs=50.0

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCce
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYA   70 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~A   70 (143)
                      |+..+.|+ ++|..|+..|++.+...+++ ...+++..+++.|..   ..+...+...+.. |+.+
T Consensus         2 ~~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   67 (68)
T TIGR00003         2 QKFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV   67 (68)
T ss_pred             cEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence            56778896 69999999999999999998 699999999988874   3577888888877 8754

This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=97.66  E-value=0.00011  Score=68.96  Aligned_cols=61  Identities=20%  Similarity=0.276  Sum_probs=54.5

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cC-HHHHHHHHhc-CCceEE
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---AN-PRKLLRKLQS-GKYANL   72 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vd-p~~Ll~aI~k-Gk~Ael   72 (143)
                      ++..|.|. |+|..|+.+|+ +|++++|| ++.+++...++.|...   .+ ++.+.+++++ ||.+..
T Consensus         2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~   69 (713)
T COG2217           2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL   69 (713)
T ss_pred             ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence            46788997 79999999999 99999999 7999999999999853   45 8999999999 999876

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=97.64  E-value=0.00015  Score=69.66  Aligned_cols=76  Identities=22%  Similarity=0.297  Sum_probs=62.3

Q ss_pred             CCCCceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEE--e-ecCHHHHHHHHhc-CCceEEeecCCCC
Q 048021            6 SSSAKMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYIT--G-RANPRKLLRKLQS-GKYANLCWVSAGN   79 (143)
Q Consensus         6 ~~s~~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~--G-~vdp~~Ll~aI~k-Gk~Ael~~~~~~~   79 (143)
                      +.....+|.|.|+ |+|..|++.|++.|++++|| ++.+.+-..+..|.  + ...++.+.+.|++ |+.++++.-.+++
T Consensus        64 ~~~~~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~~~~  143 (951)
T KOG0207|consen   64 SEITASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESVNGN  143 (951)
T ss_pred             CccccceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhcccCC
Confidence            3344449999998 79999999999999999999 77777766666665  4 3589999999999 9999998887766


Q ss_pred             CC
Q 048021           80 QI   81 (143)
Q Consensus        80 s~   81 (143)
                      +.
T Consensus       144 ~~  145 (951)
T KOG0207|consen  144 SN  145 (951)
T ss_pred             CC
Confidence            54

>PRK10671 copA copper exporting ATPase; Provisional

Probab=97.38  E-value=0.00051  Score=64.71  Aligned_cols=62  Identities=19%  Similarity=0.320  Sum_probs=55.4

Q ss_pred             EEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEe
Q 048021           12 TCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLC   73 (143)
Q Consensus        12 tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~   73 (143)
                      ++.|.|. |+|.+|+..|++.|.+++|| ++.++...+++.|.+..++..+.+.+++ |+.+.++
T Consensus       100 ~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~~~Gy~a~~~  164 (834)
T PRK10671        100 SQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEAI  164 (834)
T ss_pred             eEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHHhcCCCcccc
Confidence            5678885 79999999999999999999 7999999999999877889999999999 9988654

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=97.23  E-value=0.00057  Score=65.74  Aligned_cols=61  Identities=16%  Similarity=0.173  Sum_probs=53.6

Q ss_pred             eecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEE--eecCHHHHHHHHhc-CCceEEeecCCC
Q 048021           18 DTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYIT--GRANPRKLLRKLQS-GKYANLCWVSAG   78 (143)
Q Consensus        18 ~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~--G~vdp~~Ll~aI~k-Gk~Ael~~~~~~   78 (143)
                      .|+|..|.+.|++++.+.+|| +++|++.++..+|.  ..++++.|+++|+. |+++++..-...
T Consensus         2 gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ied~gf~~~~~~~~~~   66 (951)
T KOG0207|consen    2 GMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIEDMGFEASLLSDSEI   66 (951)
T ss_pred             CccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhhcccceeeecccCcc
Confidence            489999999999999999999 89999987776665  56899999999999 999998876543

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=96.71  E-value=0.005  Score=57.76  Aligned_cols=64  Identities=11%  Similarity=0.083  Sum_probs=51.7

Q ss_pred             ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeec-CHHHHHHHHhc-CCceEEe
Q 048021           10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRA-NPRKLLRKLQS-GKYANLC   73 (143)
Q Consensus        10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~v-dp~~Ll~aI~k-Gk~Ael~   73 (143)
                      ..++.++|. |+|.+|+.+|+++|.+++|| ++.++...+++.|.... ..+.+.+++++ |+.+...
T Consensus        52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~~Gy~a~~~  119 (741)
T PRK11033         52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQKAGFSLRDE  119 (741)
T ss_pred             CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHhcccccccc
Confidence            446778886 79999999999999999999 79999998888886321 12677888888 9987643

>TIGR02052 MerP mercuric transport protein periplasmic component

Probab=94.78  E-value=0.38  Score=30.98  Aligned_cols=62  Identities=21%  Similarity=0.223  Sum_probs=45.1

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceEE
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYANL   72 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ael   72 (143)
                      .+..+.++ +.|..|...+++.+...+|+ ...++.....+.+.-   ..+...+...+++ |+.+++
T Consensus        23 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   90 (92)
T TIGR02052        23 QTVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPSSL   90 (92)
T ss_pred             eEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEe
Confidence            34566675 68999999999999999998 577777776665541   2466666667777 877654

This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).

>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=92.48  E-value=0.67  Score=32.71  Aligned_cols=60  Identities=18%  Similarity=0.142  Sum_probs=49.6

Q ss_pred             CCceEEEEEEeecChhhHHHHHHHHhccCC--eeEEEeCCCCEEEEEeecCHHHHHHHHhc-CC
Q 048021            8 SAKMTCGLKVDTNDPAWFSSMTKVLRKIKG--ASYTIDAEEGMAYITGRANPRKLLRKLQS-GK   68 (143)
Q Consensus         8 s~~~tvvlkV~m~C~gC~~kIkkaL~kI~G--VsV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk   68 (143)
                      +...|++=||++.=..+++.++++|....+  ..+.|+...+.|.|.|.. ...|.+.|.+ ||
T Consensus        25 ~~~~T~IrkI~GD~~aL~~dL~~~l~~~~~~~~~~~V~~~~g~i~IkG~~-~~~Vk~wL~~~GF   87 (87)
T PF05046_consen   25 NRKITVIRKIEGDIWALKKDLRKFLGEKPKKKIDVRVNELTGHIEIKGDH-VEEVKKWLLEKGF   87 (87)
T ss_pred             cEeEEEEEeecCCHHHHHHHHHHHhhhhcCCCcceEEeecCCEEEEcCcc-HHHHHHHHHHCcC
Confidence            345566668999999999999999987766  468999999999999986 6778888877 75

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome

>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H

Probab=92.34  E-value=0.73  Score=31.24  Aligned_cols=60  Identities=15%  Similarity=0.222  Sum_probs=44.5

Q ss_pred             EEEEEEeecChhhHHHHHHHHhcc----CCeeEEEeCCCCEEEEEe--ecCHHHHHHHHhcCCceE
Q 048021           12 TCGLKVDTNDPAWFSSMTKVLRKI----KGASYTIDAEEGMAYITG--RANPRKLLRKLQSGKYAN   71 (143)
Q Consensus        12 tvvlkV~m~C~gC~~kIkkaL~kI----~GVsV~VDle~~~VtV~G--~vdp~~Ll~aI~kGk~Ae   71 (143)
                      .+.+.|.-.-.+=..++.++|++|    +++.+..|.+++.+.|.|  .+--+.++++|++.|.++
T Consensus         5 v~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~   70 (75)
T PF14492_consen    5 VLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVE   70 (75)
T ss_dssp             SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEB
T ss_pred             eEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCe
Confidence            445555555566677888888776    455799999999999996  567899999998844443

...

>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function

Probab=91.90  E-value=0.99  Score=32.99  Aligned_cols=62  Identities=16%  Similarity=0.185  Sum_probs=39.0

Q ss_pred             CceEEEEEEeecChhhHHHHHHHHhccCCe-e-----EEEeCCC--CEEEEEee-cCHHHHHHHHhc-CCce
Q 048021            9 AKMTCGLKVDTNDPAWFSSMTKVLRKIKGA-S-----YTIDAEE--GMAYITGR-ANPRKLLRKLQS-GKYA   70 (143)
Q Consensus         9 ~~~tvvlkV~m~C~gC~~kIkkaL~kI~GV-s-----V~VDle~--~~VtV~G~-vdp~~Ll~aI~k-Gk~A   70 (143)
                      +.+.++|.|--.-+--.-.+.++|.+++|| .     .++|.+.  =+++|+|. +|-++|.++|++ |--+
T Consensus         3 ~irRlVLDVlKP~~p~i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~I   74 (95)
T PF02680_consen    3 GIRRLVLDVLKPHEPSIVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVI   74 (95)
T ss_dssp             SEEEEEEEEEEESSS-HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EE
T ss_pred             ceeEEEEEeecCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeE
Confidence            345677777532233334677888899887 3     3455553  35666785 899999999999 7543

; PDB: 3BPD_I 2RAQ_F 2X3D_E.

>PRK13748 putative mercuric reductase; Provisional

Probab=90.81  E-value=1.3  Score=39.50  Aligned_cols=67  Identities=19%  Similarity=0.243  Sum_probs=51.3

Q ss_pred             EEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe--ecCHHHHHHHHhc-CCceEEeecCCCCC
Q 048021           14 GLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG--RANPRKLLRKLQS-GKYANLCWVSAGNQ   80 (143)
Q Consensus        14 vlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G--~vdp~~Ll~aI~k-Gk~Ael~~~~~~~s   80 (143)
                      .+.+. ++|..|..++++.+...+|+ ...++...+.+.+..  ..+...+...++. |+.+++...++.+.
T Consensus         3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~   74 (561)
T PRK13748          3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVAGLGYRATLADAPPTDN   74 (561)
T ss_pred             EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCeeeccCcccccc
Confidence            35564 68999999999999999998 688888888877763  2466777777778 99888777754443

>COG1888 Uncharacterized protein conserved in archaea [Function unknown]

Probab=90.11  E-value=0.56  Score=34.27  Aligned_cols=61  Identities=18%  Similarity=0.154  Sum_probs=36.6

Q ss_pred             ceEEEEEEee-cChhhHHHHHHHHhccCCe---e---EEEeCC--CCEEEEEe-ecCHHHHHHHHhc-CCce
Q 048021           10 KMTCGLKVDT-NDPAWFSSMTKVLRKIKGA---S---YTIDAE--EGMAYITG-RANPRKLLRKLQS-GKYA   70 (143)
Q Consensus        10 ~~tvvlkV~m-~C~gC~~kIkkaL~kI~GV---s---V~VDle--~~~VtV~G-~vdp~~Ll~aI~k-Gk~A   70 (143)
                      .+.++|.|-- +-+--.-.+.+.|.+++||   +   .++|.+  +=++||.| .+|-+.|.+.|++ |-.+
T Consensus         5 iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~I   76 (97)
T COG1888           5 IRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAI   76 (97)
T ss_pred             ceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCee
Confidence            3455666532 2222222344455555554   2   344444  56788888 4899999999999 8644

>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold

Probab=89.66  E-value=0.26  Score=31.53  Aligned_cols=31  Identities=16%  Similarity=0.305  Sum_probs=16.9

Q ss_pred             HHHHHHHhccCCe---eEEEeCCCCEEEEEeecC
Q 048021           26 SSMTKVLRKIKGA---SYTIDAEEGMAYITGRAN   56 (143)
Q Consensus        26 ~kIkkaL~kI~GV---sV~VDle~~~VtV~G~vd   56 (143)
                      .+|+.+|.+-+++   ++.|...++.|++.|.++
T Consensus         2 ~~v~~~L~~~~~~~~~~i~v~v~~g~v~L~G~v~   35 (64)
T PF04972_consen    2 TKVRAALRADPWLPDSNISVSVENGVVTLSGEVP   35 (64)
T ss_dssp             -----------CTT-TTEEEEEECTEEEEEEEES
T ss_pred             cccccccccccccCCCeEEEEEECCEEEEEeeCc
Confidence            4678888874444   488999999999999984

There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.

>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones

Probab=89.43  E-value=1.8  Score=22.20  Aligned_cols=49  Identities=27%  Similarity=0.409  Sum_probs=33.0

Q ss_pred             eecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee--cCHHHHHHHHhc
Q 048021           18 DTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR--ANPRKLLRKLQS   66 (143)
Q Consensus        18 ~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~--vdp~~Ll~aI~k   66 (143)
                      ++.|..|...++..+...+|+ ...+......+.+...  .+...+...+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   57 (63)
T cd00371           6 GMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIED   57 (63)
T ss_pred             CeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHHHH
Confidence            468999999999999888887 5666666555555532  255554444444

HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.

>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function

Probab=88.86  E-value=0.79  Score=30.21  Aligned_cols=32  Identities=16%  Similarity=0.313  Sum_probs=22.1

Q ss_pred             eEEEEEEeecChhhH------HHHHHHHhccCCe-eEEE
Q 048021           11 MTCGLKVDTNDPAWF------SSMTKVLRKIKGA-SYTI   42 (143)
Q Consensus        11 ~tvvlkV~m~C~gC~------~kIkkaL~kI~GV-sV~V   42 (143)
                      -++.|.+.+...+|.      +.|+++|+.++|| +|+|
T Consensus        34 ~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V   72 (72)
T PF01883_consen   34 GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV   72 (72)
T ss_dssp             CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred             CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence            356677777666665      7889999999999 7775

The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.

>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC

Probab=87.74  E-value=2.4  Score=29.31  Aligned_cols=44  Identities=14%  Similarity=0.211  Sum_probs=30.4

Q ss_pred             hhHHHHHHHHhccCCeeEEEeCCCCEEEEEee-cCHHHHHHHHhc
Q 048021           23 AWFSSMTKVLRKIKGASYTIDAEEGMAYITGR-ANPRKLLRKLQS   66 (143)
Q Consensus        23 gC~~kIkkaL~kI~GVsV~VDle~~~VtV~G~-vdp~~Ll~aI~k   66 (143)
                      +=...|+++|.+++|++|....++|++.|.=. .+...+.+.|.+
T Consensus        15 ~~~~~v~~~l~~~~gvEVh~~~~~GKiVVtiE~~~~~~~~~~~~~   59 (79)
T PF03927_consen   15 ERLEEVAEALAAIPGVEVHAVDEDGKIVVTIEAESSEEEVDLIDA   59 (79)
T ss_dssp             CCHHHHHHHHCCSTTEEEEEEETTTEEEEEEEESSHHHHHHHHHH
T ss_pred             hhHHHHHHHHHcCCCcEEEeeCCCCeEEEEEEeCChHHHHHHHHH
Confidence            44678999999999998755444477777643 455666655554

The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.

>PF13732 DUF4162: Domain of unknown function (DUF4162)

Probab=84.51  E-value=3.6  Score=27.42  Aligned_cols=45  Identities=18%  Similarity=0.189  Sum_probs=32.8

Q ss_pred             HhccCCe-eEEEeCCC-CEEEEEeecCHHHHHHHHhc-CCceEEeecCC
Q 048021           32 LRKIKGA-SYTIDAEE-GMAYITGRANPRKLLRKLQS-GKYANLCWVSA   77 (143)
Q Consensus        32 L~kI~GV-sV~VDle~-~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~~~   77 (143)
                      |+.++|| ++..+... -++.|....++.+|++.|.+ |. +.-+....
T Consensus        26 l~~~~~v~~v~~~~~~~~~i~l~~~~~~~~ll~~l~~~g~-I~~f~~~~   73 (84)
T PF13732_consen   26 LEELPGVESVEQDGDGKLRIKLEDEETANELLQELIEKGI-IRSFEEEE   73 (84)
T ss_pred             HhhCCCeEEEEEeCCcEEEEEECCcccHHHHHHHHHhCCC-eeEEEEcC
Confidence            8888999 67765433 35555666788999999999 99 76555543

>PRK11023 outer membrane lipoprotein; Provisional

Probab=83.86  E-value=3.1  Score=33.02  Aligned_cols=41  Identities=12%  Similarity=0.191  Sum_probs=32.6

Q ss_pred             hHHHHHHHHhccCCe---eEEEeCCCCEEEEEeecCHHHHHHHH
Q 048021           24 WFSSMTKVLRKIKGA---SYTIDAEEGMAYITGRANPRKLLRKL   64 (143)
Q Consensus        24 C~~kIkkaL~kI~GV---sV~VDle~~~VtV~G~vdp~~Ll~aI   64 (143)
                      =..+|+.+|..-+++   .|+|..++|.|++.|.++.++..+++
T Consensus       128 It~kik~~L~~~~~v~~~~I~V~t~~G~V~L~G~v~~~e~~~a~  171 (191)
T PRK11023        128 ITTKVRSQLLTSDSVKSSNVKVTTENGEVFLLGLVTQREAKAAA  171 (191)
T ss_pred             HHHHHHHHHhcCCCCCcceEEEEEECcEEEEEEEeCHHHHHHHH
Confidence            456899999877777   38999999999999999876554444

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=83.26  E-value=3.1  Score=26.75  Aligned_cols=33  Identities=18%  Similarity=0.334  Sum_probs=24.1

Q ss_pred             ceEEEEEEeecChh-hHHHHHHHHhccCCe-eEEE
Q 048021           10 KMTCGLKVDTNDPA-WFSSMTKVLRKIKGA-SYTI   42 (143)
Q Consensus        10 ~~tvvlkV~m~C~g-C~~kIkkaL~kI~GV-sV~V   42 (143)
                      ...+.|.|+..-.. --++|.++|++++|| +|.+
T Consensus        40 ~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~   74 (76)
T cd04888          40 RANVTISIDTSTMNGDIDELLEELREIDGVEKVEL   74 (76)
T ss_pred             eEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence            34566666655444 778999999999999 7765

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only]

Probab=83.05  E-value=2.7  Score=34.28  Aligned_cols=39  Identities=23%  Similarity=0.450  Sum_probs=31.6

Q ss_pred             HHHHHHHHhccCCeeEEEeCCCCEEEEEee---cCHHHHHHH
Q 048021           25 FSSMTKVLRKIKGASYTIDAEEGMAYITGR---ANPRKLLRK   63 (143)
Q Consensus        25 ~~kIkkaL~kI~GVsV~VDle~~~VtV~G~---vdp~~Ll~a   63 (143)
                      ...|+++|.+..|+.+++|.+++.|+|...   .||..++++
T Consensus        26 ~g~v~k~ie~~~~~~~~iD~~~~~V~i~~~~~t~Dp~~~~ka   67 (194)
T COG1094          26 WGEVKKAIEEKTGVKLRIDSKTGSVTIRTTRKTEDPLALLKA   67 (194)
T ss_pred             cccchHHHHhhcCeEEEEECCCCeEEEEecCCCCChHHHHHH
Confidence            457888998888899999999999999965   476665544

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=81.71  E-value=11  Score=24.06  Aligned_cols=56  Identities=29%  Similarity=0.443  Sum_probs=35.7

Q ss_pred             EEEee-cChhhHHHHHHHHhccCCe---eEEE-eC-CCCEEEEEeecCHHHHHHHHhc-CCceEE
Q 048021           15 LKVDT-NDPAWFSSMTKVLRKIKGA---SYTI-DA-EEGMAYITGRANPRKLLRKLQS-GKYANL   72 (143)
Q Consensus        15 lkV~m-~C~gC~~kIkkaL~kI~GV---sV~V-Dl-e~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael   72 (143)
                      |.|.+ ...|=-.+|.++|.+ .|+   ++.+ .. +...+.+.. -|++++++.|++ |+++.+
T Consensus         4 i~v~v~d~pG~La~v~~~l~~-~~inI~~i~~~~~~~~~~~rl~~-~~~~~~~~~L~~~G~~v~~   66 (66)
T cd04908           4 LSVFLENKPGRLAAVTEILSE-AGINIRALSIADTSEFGILRLIV-SDPDKAKEALKEAGFAVKL   66 (66)
T ss_pred             EEEEEcCCCChHHHHHHHHHH-CCCCEEEEEEEecCCCCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence            34444 456777788888877 455   3322 22 234444444 578899999999 998753

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional

Probab=81.32  E-value=5.8  Score=28.21  Aligned_cols=44  Identities=16%  Similarity=0.299  Sum_probs=30.2

Q ss_pred             hhHHHHHHHHhccCCeeEE-EeCCCCEEEEEee-cCHHHH---HHHHhc
Q 048021           23 AWFSSMTKVLRKIKGASYT-IDAEEGMAYITGR-ANPRKL---LRKLQS   66 (143)
Q Consensus        23 gC~~kIkkaL~kI~GVsV~-VDle~~~VtV~G~-vdp~~L---l~aI~k   66 (143)
                      .=...|+++|.+++|++|- .|.++||+.|.=. .+...+   +++|+.
T Consensus        17 e~~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~~~~~~~~~i~~I~~   65 (87)
T PRK10553         17 ERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTIESVRN   65 (87)
T ss_pred             HHHHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeCChHHHHHHHHHHHc
Confidence            3367899999999999866 4677788777633 344444   445554

>PRK11198 LysM domain/BON superfamily protein; Provisional

Probab=80.35  E-value=3.3  Score=31.54  Aligned_cols=44  Identities=18%  Similarity=0.314  Sum_probs=30.9

Q ss_pred             hhhHHHHHHHHhccCCe---eEEEeCCCCEEEEEeecCHHHHHHHHhc
Q 048021           22 PAWFSSMTKVLRKIKGA---SYTIDAEEGMAYITGRANPRKLLRKLQS   66 (143)
Q Consensus        22 ~gC~~kIkkaL~kI~GV---sV~VDle~~~VtV~G~vdp~~Ll~aI~k   66 (143)
                      +.=+++|+++|.+ .|+   .+.|..++|.|++.|.++....+.++..
T Consensus        25 ~~~~~~i~~~i~~-~~~~~~~i~V~v~~G~v~l~G~v~s~~~~~~~~~   71 (147)
T PRK11198         25 EDAADALKEHISK-QGLGDADVNVQVEDGKATVSGDAASQEAKEKILL   71 (147)
T ss_pred             HHHHHHHHHHHHh-cCCCcCCceEEEeCCEEEEEEEeCCHHHHHHHHH
Confidence            3445677888876 454   3788888999999999865555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
2crl_A	98	Copper chaperone for superoxide dismutase; SOD1, f	2e-07
3iwl_A	68	Copper transport protein ATOX1; beta-alpha-beta-BE	1e-06
1cc8_A	73	Protein (metallochaperone ATX1); copper transport,	1e-04

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 10 KMTCGLKVDTNDPAWFSSMTKVLRKIKG-ASYTIDAEEGMAYITGRANPRKLLRKLQ-SG 67
          +MTC         +   ++ K L+ + G     +  E+ M  +      +++   L+ +G
Sbjct: 26 QMTCQ--------SCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTG 77

Query: 68 KYANLCWVSAGNQITYGNA 86
          + A L  + +G     G +
Sbjct: 78 RQAVLKGMGSGQLQNSGPS 96

>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A Length = 68

 Score = 42.7 bits (101), Expect = 1e-06
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 9/63 (14%)

Query: 11 MTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKLLRKLQ-SGKY 69
          MTCG   +        ++++VL K+ G  Y ID       I    +   LL  L+ +GK 
Sbjct: 10 MTCGGCAE--------AVSRVLNKLGGVKYDIDLPNKKVCIESEHSMDTLLATLKKTGKT 61

Query: 70 ANL 72
           + 
Sbjct: 62 VSY 64

>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A Length = 73

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 16/75 (21%)

Query: 10 KMTCGLKVDTNDPAWFSSMTKVLRKIKG--ASYTIDAEEGMAYITGRANPRKLLRKLQ-S 66
           MTC             ++ KVL K++   +   I  E+ +  +        +L K++ +
Sbjct: 12 VMTCSGCSG--------AVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKT 63

Query: 67 GKYANLCWVSAGNQI 81
          GK      V +G Q+
Sbjct: 64 GKE-----VRSGKQL 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
3iwl_A	68	Copper transport protein ATOX1; beta-alpha-beta-BE	99.67
1cc8_A	73	Protein (metallochaperone ATX1); copper transport,	99.62
2crl_A	98	Copper chaperone for superoxide dismutase; SOD1, f	99.58
4a4j_A	69	Pacszia, cation-transporting ATPase PACS; hydrolas	99.57
3dxs_X	74	Copper-transporting ATPase RAN1; CXXC motif, ferre	99.49
2xmm_A	64	SSR2857 protein, ATX1; metal transport, copper hom	99.46
3fry_A	73	Probable copper-exporting P-type ATPase A; transpo	99.45
2roe_A	66	Heavy metal binding protein; NMR {Thermus thermoph	99.42
1qup_A	222	Superoxide dismutase 1 copper chaperone; two domai	99.39
2l3m_A	71	Copper-ION-binding protein; structural genomics, c	99.39
1aw0_A	72	Menkes copper-transporting ATPase; copper-binding	99.39
1fvq_A	72	Copper-transporting ATPase; APO-CCC2A, hydrolase;	99.36
2xmw_A	71	PACS-N, cation-transporting ATPase PACS; hydrolase	99.35
2k2p_A	85	Uncharacterized protein ATU1203; putative metal-bi	99.34
1osd_A	72	MERP, hypothetical protein MERP; mercury resistanc	99.34
1q8l_A	84	Copper-transporting ATPase 1; metal binding protei	99.33
1cpz_A	68	Protein (COPZ); copper chaperone, metal transport,	99.32
1kvi_A	79	Copper-transporting ATPase 1; menkes, Cu-protein,	99.31
1opz_A	76	Potential copper-transporting ATPase; mutation, fo	99.31
3cjk_B	75	Copper-transporting ATPase 1; HAH1, ATP7B, menkes	99.3
2kyz_A	67	Heavy metal binding protein; structural genomics,	99.3
1jk9_B	249	CCS, copper chaperone for superoxide dismutase; pr	99.3
2qif_A	69	Copper chaperone COPZ; tetranuclear Cu(I) cluster;	99.29
1yg0_A	66	COP associated protein; open-faced beta-sandwich,	99.29
1mwy_A	73	ZNTA; open-faced beta-sandwich fold, beta-alpha-be	99.29
1yjr_A	75	Copper-transporting ATPase 1; metallochaperone, pr	99.28
2ldi_A	71	Zinc-transporting ATPase; metal homeostasis, metal	99.27
1y3j_A	77	Copper-transporting ATPase 1; ferrodoxin-like fold	99.27
2kt2_A	69	Mercuric reductase; nmera, MERA, HMA domain, mercu	99.26
2kkh_A	95	Putative heavy metal transporter; zinc transport,	99.26
2g9o_A	90	Copper-transporting ATPase 1; menkes disease, solu	99.22
2ofg_X	111	Zinc-transporting ATPase; ferredoxin-like fold, be	99.19
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	99.18
1jww_A	80	Potential copper-transporting ATPase; beta-alpha-b	99.16
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	99.16
2aj0_A	71	Probable cadmium-transporting ATPase; ferrodoxin-l	99.16
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	99.14
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	99.0
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	98.84
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	98.72
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	98.63
3bpd_A	100	Uncharacterized protein; heptamer, Mg+2 ION, PSI-2	89.7
3cq1_A	103	Putative uncharacterized protein TTHB138; DTDP-4-k	88.91
2jsx_A	95	Protein NAPD; TAT, proofreading, cytoplasm, chaper	88.49
3lno_A	108	Putative uncharacterized protein; alpha-beta fold,	88.01
2x3d_A	96	SSO6206; unknown function; 2.70A {Sulfolobus solfa	87.4
1uwd_A	103	Hypothetical protein TM0487; similar to PAAD prote	86.23
4ar0_A	128	Type IV pilus biogenesis and competence protein P;	84.06
2cpq_A	91	FragIle X mental retardation syndrome related prot	83.39
2raq_A	97	Conserved protein MTH889; alpha-beta protein, stru	81.3
1dtj_A	76	RNA-binding neurooncological ventral antigen 2; KH	81.25
1j5k_A	89	Heterogeneous nuclear ribonucleoprotein K; single-	80.57

>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A

Probab=99.67  E-value=3.5e-16  Score=101.10  Aligned_cols=65  Identities=23%  Similarity=0.298  Sum_probs=61.8

Q ss_pred             eEEEEEEeecChhhHHHHHHHHhccCCeeEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeec
Q 048021           11 MTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWV   75 (143)
Q Consensus        11 ~tvvlkV~m~C~gC~~kIkkaL~kI~GVsV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~   75 (143)
                      ++.+|+|.|+|.+|+++|+++|++++||++.+|+.+++++|.+.++++.|+++|++ ||++++++.
T Consensus         2 ~~~~~~vgm~C~~C~~~i~~~l~~~~gV~v~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~~   67 (68)
T 3iwl_A            2 PKHEFSVDMTCGGCAEAVSRVLNKLGGVKYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLGL   67 (68)
T ss_dssp             CEEEEEECCCSHHHHHHHHHHHHHHCSEEEEEETTTTEEEEEESSCHHHHHHHHHTTCSCEEEEEC
T ss_pred             ceEEEEECcCcHHHHHHHHHHHHcCCCeEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCceEecCC
Confidence            46789998899999999999999999999999999999999999999999999999 999999875

>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A

Probab=99.62  E-value=3.3e-15  Score=96.83  Aligned_cols=64  Identities=17%  Similarity=0.146  Sum_probs=60.6

Q ss_pred             eEEEEEEeecChhhHHHHHHHHhccC-Ce-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEee
Q 048021           11 MTCGLKVDTNDPAWFSSMTKVLRKIK-GA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCW   74 (143)
Q Consensus        11 ~tvvlkV~m~C~gC~~kIkkaL~kI~-GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~   74 (143)
                      ++++|+|+|+|++|+++|+++|++++ || ++++|+.+++++|.+.++++.|+++|++ ||.++++.
T Consensus         5 ~~~~~~v~m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~   71 (73)
T 1cc8_A            5 KHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEVRSGK   71 (73)
T ss_dssp             EEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHHTTSSCEEEEE
T ss_pred             eEEEEEEeeECHHHHHHHHHHHHhCCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCCceeee
Confidence            56789999999999999999999999 99 7999999999999998999999999999 99998865

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.7e-14  Score=100.56  Aligned_cols=72  Identities=17%  Similarity=0.224  Sum_probs=66.0

Q ss_pred             ceEEEEEEeecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeecCCCCCC
Q 048021           10 KMTCGLKVDTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWVSAGNQI   81 (143)
Q Consensus        10 ~~tvvlkV~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~~~~~s~   81 (143)
                      .++++|+|+|+|.+|+++|+++|++++|| ++.||++.++++|.+.++++.|+++|++ ||+++++..+..+.+
T Consensus        18 ~~~~~l~V~m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~   91 (98)
T 2crl_A           18 LCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQLQ   91 (98)
T ss_dssp             CEEEEEEECCCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHTTTSCEEEEESCCCCCC
T ss_pred             ceEEEEEEeeECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCceEEccCCCCccC
Confidence            45678999999999999999999999999 7999999999999998999999999999 999999887765543

>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A

Probab=99.57  E-value=1.4e-14  Score=92.24  Aligned_cols=63  Identities=21%  Similarity=0.335  Sum_probs=58.7

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEE--eecCHHHHHHHHhc-CCceEEe
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYIT--GRANPRKLLRKLQS-GKYANLC   73 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~--G~vdp~~Ll~aI~k-Gk~Ael~   73 (143)
                      ++++|+|+ |+|.+|+++|+++|++++|| ++.+|+..++++|.  +.++++.|+++|++ ||+++++
T Consensus         2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~~   69 (69)
T 4a4j_A            2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARVL   69 (69)
T ss_dssp             EEEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHTTCEEEEC
T ss_pred             CEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHcCCceEeC
Confidence            57889997 79999999999999999999 79999999999999  67899999999999 9999874

>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0

Probab=99.49  E-value=1.6e-13  Score=88.62  Aligned_cols=65  Identities=12%  Similarity=0.085  Sum_probs=59.0

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceEEeec
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYANLCWV   75 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ael~~~   75 (143)
                      ++++|+|+ |+|.+|+.+|+++|++++|| ++.||+..++++|..   .++++.|+++|++ ||+++++.-
T Consensus         2 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~   72 (74)
T 3dxs_X            2 RKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEAEILAE   72 (74)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEEEEEE
T ss_pred             cEEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceEEccC
Confidence            46789996 79999999999999999999 799999999999985   3689999999999 999998753

>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A

Probab=99.46  E-value=9.5e-14  Score=85.18  Aligned_cols=61  Identities=21%  Similarity=0.195  Sum_probs=55.9

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceE
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYAN   71 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ae   71 (143)
                      |+++|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|.+.++++.|.++|++ ||.++
T Consensus         1 m~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~G~~~~   64 (64)
T 2xmm_A            1 MTIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGYEVE   64 (64)
T ss_dssp             -CEEEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEECSSCHHHHHHHHHHTTCCCC
T ss_pred             CeEEEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEecCCHHHHHHHHHHcCCCCC
Confidence            45789995 89999999999999999999 7999999999999988899999999999 99764

>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}

Probab=99.45  E-value=2.1e-13  Score=88.86  Aligned_cols=64  Identities=17%  Similarity=0.171  Sum_probs=59.3

Q ss_pred             ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeec
Q 048021           10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWV   75 (143)
Q Consensus        10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~   75 (143)
                      .++.+|+|+ |+|.+|+.+|+++|++ +|| .+.||+..++++|... +++.|+++|++ ||.+++++.
T Consensus         4 m~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~-~~~~i~~~i~~~Gy~~~~~~~   70 (73)
T 3fry_A            4 VEKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKE-DVDKYIKAVEAAGYQAKLRSS   70 (73)
T ss_dssp             CEEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGG-GHHHHHHHHHHTTCEEEECCS
T ss_pred             cEEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEEC-CHHHHHHHHHHcCCceEecCc
Confidence            457889997 8999999999999999 999 7999999999999988 99999999999 999998764

>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A

Probab=99.42  E-value=3e-13  Score=84.94  Aligned_cols=61  Identities=28%  Similarity=0.463  Sum_probs=56.0

Q ss_pred             EEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEe
Q 048021           13 CGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLC   73 (143)
Q Consensus        13 vvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~   73 (143)
                      .+|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|.+.++++.|+++|++ ||.++.+
T Consensus         2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~   65 (66)
T 2roe_A            2 LKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAEVL   65 (66)
T ss_dssp             BCEEEECCCSHHHHHHHHHHHHTSTTCCCEEECSSSCBEEECSCCCHHHHHHHHHTTTCEEEEC
T ss_pred             EEEEECCeEcHHHHHHHHHHHHcCCCeEEEEEEeCCCEEEECCCCCHHHHHHHHHHcCCCcEec
Confidence            358886 89999999999999999999 7999999999999777899999999999 9998764

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1

Probab=99.39  E-value=1e-12  Score=105.11  Aligned_cols=73  Identities=15%  Similarity=0.269  Sum_probs=66.8

Q ss_pred             CCCceEEEEEEeecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeecCCCC
Q 048021            7 SSAKMTCGLKVDTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWVSAGN   79 (143)
Q Consensus         7 ~s~~~tvvlkV~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~~~~~   79 (143)
                      +...++++|+|+|+|.+|+++|+++|++++|| +++||++.++++|.+.+++++|+++|++ ||+++++....++
T Consensus         2 ~~~~~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aI~~~Gy~a~~~~~~~~~   76 (222)
T 1qup_A            2 TNDTYEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGKPN   76 (222)
T ss_dssp             GGGCEEEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHTTCCCEEECCSCTT
T ss_pred             cccceEEEEEEccccHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEeccCCHHHHHHHHHHcCCccccccCCCcc
Confidence            34567889999999999999999999999999 7999999999999999999999999999 9999998876554

>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}

Probab=99.39  E-value=1.9e-12  Score=81.20  Aligned_cols=63  Identities=13%  Similarity=0.217  Sum_probs=56.1

Q ss_pred             CceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceE
Q 048021            9 AKMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYAN   71 (143)
Q Consensus         9 ~~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ae   71 (143)
                      ..++++|+|. |+|.+|+.+|+++|.+++|| ++.+|+..++++|..   .++++.|+++|++ ||.++
T Consensus         3 ~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~   71 (71)
T 2l3m_A            3 AMEQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYDVQ   71 (71)
T ss_dssp             SEEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHTTCEEC
T ss_pred             CcEEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCCC
Confidence            3467889996 89999999999999999999 799999999999984   3688999999999 99764

>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A

Probab=99.39  E-value=2.2e-12  Score=80.91  Aligned_cols=64  Identities=17%  Similarity=0.221  Sum_probs=57.3

Q ss_pred             ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-CCceEEe
Q 048021           10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-GKYANLC   73 (143)
Q Consensus        10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~   73 (143)
                      .++++|+|. |+|.+|+.+|+++|.+++|| ++.+|+..++++|...   ++++.|+++|++ ||.+++.
T Consensus         2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~   71 (72)
T 1aw0_A            2 TQETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATLS   71 (72)
T ss_dssp             CEEEEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEEC
T ss_pred             CeEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHCCCCcEeC
Confidence            456789996 89999999999999999999 7999999999999864   578999999999 9988753

>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B

Probab=99.36  E-value=2.5e-12  Score=80.60  Aligned_cols=64  Identities=16%  Similarity=0.152  Sum_probs=58.0

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe--ecCHHHHHHHHhc-CCceEEee
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG--RANPRKLLRKLQS-GKYANLCW   74 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G--~vdp~~Ll~aI~k-Gk~Ael~~   74 (143)
                      ++++|+|+ |+|.+|+++|+++|.+++|| ++.+|+..++++|..  .++++.|.++|++ ||.++++.
T Consensus         2 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~~~   70 (72)
T 1fvq_A            2 REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEILR   70 (72)
T ss_dssp             EEEEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHHTCCEEEEE
T ss_pred             eEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHCCCceEEcc
Confidence            67889996 89999999999999999999 799999999999985  4678999999999 99998764

>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A

Probab=99.35  E-value=7.3e-12  Score=78.04  Aligned_cols=63  Identities=21%  Similarity=0.278  Sum_probs=55.5

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee--cCHHHHHHHHhc-CCceEEe
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR--ANPRKLLRKLQS-GKYANLC   73 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~--vdp~~Ll~aI~k-Gk~Ael~   73 (143)
                      .+++|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|...  ++++.|+++|++ ||.+.+.
T Consensus         3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~~   70 (71)
T 2xmw_A            3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARVL   70 (71)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHHTCEEEEE
T ss_pred             cEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCCCceeC
Confidence            45789997 79999999999999999999 7999999999999843  678999999999 9988753

>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}

Probab=99.34  E-value=1.2e-12  Score=88.91  Aligned_cols=63  Identities=8%  Similarity=0.102  Sum_probs=56.8

Q ss_pred             CceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceE
Q 048021            9 AKMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYAN   71 (143)
Q Consensus         9 ~~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ae   71 (143)
                      ...+++|+|+ |+|.+|+++|+++|++++|| ++.||+..++++|.+.++++.|+++|++ ||.++
T Consensus        20 ~~~~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~~~~~~i~~~i~~~Gy~~~   85 (85)
T 2k2p_A           20 QGAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSDAAHIAEIITAAGYTPE   85 (85)
T ss_dssp             --CEEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESCCCHHHHHHHHHHTTCCCC
T ss_pred             cccEEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEecCCHHHHHHHHHHcCCCCC
Confidence            3456789996 89999999999999999999 7999999999999988999999999999 99763

>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A

Probab=99.34  E-value=6.6e-12  Score=78.65  Aligned_cols=64  Identities=20%  Similarity=0.195  Sum_probs=57.0

Q ss_pred             ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-CCceEEe
Q 048021           10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-GKYANLC   73 (143)
Q Consensus        10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~   73 (143)
                      .++++|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|...   ++++.|+++|++ ||.+++.
T Consensus         2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~   71 (72)
T 1osd_A            2 TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSVK   71 (72)
T ss_dssp             EEEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCEEC
T ss_pred             ceEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEec
Confidence            356789996 89999999999999999999 7999999999999854   578999999999 9998763

>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A

Probab=99.33  E-value=5.6e-12  Score=83.25  Aligned_cols=71  Identities=13%  Similarity=0.165  Sum_probs=61.4

Q ss_pred             CCCCCceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-CCceEEeec
Q 048021            5 SSSSAKMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-GKYANLCWV   75 (143)
Q Consensus         5 s~~s~~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~~~   75 (143)
                      +--...++++|+|+ |+|.+|+++|+++|.+++|| ++.+|+..++++|...   ++++.|+++|++ ||.+++...
T Consensus         3 ~~~~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~   79 (84)
T 1q8l_A            3 MAQAGEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKKQ   79 (84)
T ss_dssp             SSSSSCEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCEECSCC
T ss_pred             ccccCceEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEecCC
Confidence            33445678899996 79999999999999999999 7999999999999863   588999999999 999876553

>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1

Probab=99.32  E-value=9.4e-12  Score=76.93  Aligned_cols=61  Identities=10%  Similarity=0.178  Sum_probs=54.8

Q ss_pred             EEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-CCceEEe
Q 048021           13 CGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-GKYANLC   73 (143)
Q Consensus        13 vvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~   73 (143)
                      ++|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|...   ++++.|.++|++ ||.++++
T Consensus         2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~   68 (68)
T 1cpz_A            2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEVI   68 (68)
T ss_dssp             CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEEEC
T ss_pred             EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcccC
Confidence            368886 89999999999999999999 7999999999999853   588999999999 9998764

>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A

Probab=99.31  E-value=1.1e-11  Score=79.71  Aligned_cols=67  Identities=16%  Similarity=0.188  Sum_probs=59.3

Q ss_pred             CceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-CCceEEeec
Q 048021            9 AKMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-GKYANLCWV   75 (143)
Q Consensus         9 ~~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~~~   75 (143)
                      ...+++|+|. |+|.+|+.+|+++|.+++|| ++.+|+..++++|...   ++++.|+++|++ ||.+++..+
T Consensus         6 ~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~   78 (79)
T 1kvi_A            6 GVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHNP   78 (79)
T ss_dssp             TCEEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHCCCEEECCC
T ss_pred             CcEEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHCCCceEecCC
Confidence            3567889996 89999999999999999999 7999999999999853   578999999999 999887654

>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A

Probab=99.31  E-value=7.5e-12  Score=78.71  Aligned_cols=65  Identities=11%  Similarity=0.173  Sum_probs=57.4

Q ss_pred             CceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceEEe
Q 048021            9 AKMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYANLC   73 (143)
Q Consensus         9 ~~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ael~   73 (143)
                      +..+.+|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|..   .++++.|.++|++ ||.++++
T Consensus         4 ~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~   74 (76)
T 1opz_A            4 EQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVVIE   74 (76)
T ss_dssp             CCEEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEECC
T ss_pred             cceEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceecC
Confidence            3567889997 79999999999999999999 799999999999984   4578999999999 9987654

>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A

Probab=99.30  E-value=2.4e-11  Score=77.25  Aligned_cols=64  Identities=17%  Similarity=0.240  Sum_probs=57.3

Q ss_pred             EEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-CCceEEeec
Q 048021           12 TCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-GKYANLCWV   75 (143)
Q Consensus        12 tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~~~   75 (143)
                      +++|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|...   ++++.|+++|++ ||.+++...
T Consensus         3 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~   72 (75)
T 3cjk_B            3 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHNI   72 (75)
T ss_dssp             EEEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCCEEEEEE
T ss_pred             EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEeecC
Confidence            4678996 89999999999999999999 7999999999999853   578999999999 999987654

>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}

Probab=99.30  E-value=3.5e-12  Score=80.37  Aligned_cols=60  Identities=20%  Similarity=0.241  Sum_probs=53.7

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEE
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANL   72 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael   72 (143)
                      |+.+|+|+ |+|.+|+.+|+++|.++ || ++.+|+..++++|....+ +.|+++|++ ||.+..
T Consensus         1 m~~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~-~~i~~~i~~~Gy~~~~   63 (67)
T 2kyz_A            1 MRYVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENL-DSVLKKLEEIDYPVES   63 (67)
T ss_dssp             CEEEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCH-HHHHHHHHTTTCCCCB
T ss_pred             CeEEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCH-HHHHHHHHHcCCceee
Confidence            45789995 89999999999999999 99 799999999999987655 899999999 998753

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1

Probab=99.30  E-value=9.4e-12  Score=101.29  Aligned_cols=71  Identities=15%  Similarity=0.265  Sum_probs=65.6

Q ss_pred             CceEEEEEEeecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeecCCCC
Q 048021            9 AKMTCGLKVDTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWVSAGN   79 (143)
Q Consensus         9 ~~~tvvlkV~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~~~~~   79 (143)
                      ..++++|+|+|+|.+|+++|+++|++++|| +++||++.++++|.+.+++++|+++|++ ||+++++....++
T Consensus         5 ~~~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~~   77 (249)
T 1jk9_B            5 DTYEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGKPN   77 (249)
T ss_dssp             CCEEEEEECCCCSSSHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHTTTCCCEEEEESSTT
T ss_pred             CceeEEEEEeeccHHHHHHHHHHHhccCCeeEEEEEcCCCeEEEecCCCHHHHHHHHHHhCCCcccccCCccc
Confidence            357789999999999999999999999999 7999999999999998999999999999 9999998876654

>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A

Probab=99.29  E-value=1.4e-11  Score=75.25  Aligned_cols=61  Identities=10%  Similarity=0.201  Sum_probs=54.2

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceE
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYAN   71 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ae   71 (143)
                      ++.+|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|..   .++++.|.++|++ ||.++
T Consensus         2 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~   68 (69)
T 2qif_A            2 EQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDVA   68 (69)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEEC
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcc
Confidence            35679997 79999999999999999999 799999999999984   3578999999999 99763

>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}

Probab=99.29  E-value=8.8e-12  Score=76.64  Aligned_cols=60  Identities=15%  Similarity=0.184  Sum_probs=53.7

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee--cCHHHHHHHHhc-CCce
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR--ANPRKLLRKLQS-GKYA   70 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~--vdp~~Ll~aI~k-Gk~A   70 (143)
                      ++.+|+|. |+|.+|+++|+++|.+++|| ++.+|+..++++|...  .+++.|.++|++ ||.+
T Consensus         1 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~   65 (66)
T 1yg0_A            1 MKATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQEV   65 (66)
T ss_dssp             CEEEECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHHTCCC
T ss_pred             CeEEEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCCc
Confidence            35678886 89999999999999999999 7999999999999854  478999999999 9975

>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A

Probab=99.29  E-value=2.8e-11  Score=76.96  Aligned_cols=62  Identities=13%  Similarity=0.094  Sum_probs=55.0

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeec-CHHHHHHHHhc-CCceEE
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRA-NPRKLLRKLQS-GKYANL   72 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~v-dp~~Ll~aI~k-Gk~Ael   72 (143)
                      ++++|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|.... ..+.|+++|++ ||.+..
T Consensus         3 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~Gy~~~~   68 (73)
T 1mwy_A            3 TRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLRD   68 (73)
T ss_dssp             EEEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCEEEE
T ss_pred             eEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHcCCcccc
Confidence            56789997 89999999999999999999 79999999999998643 37789999999 998764

>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A

Probab=99.28  E-value=1.3e-11  Score=77.82  Aligned_cols=65  Identities=18%  Similarity=0.217  Sum_probs=56.8

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-CCceEEeec
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-GKYANLCWV   75 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~~~   75 (143)
                      .+++|+|. |+|.+|+.+|+++|.+++|| ++.+|+..++++|...   ++++.|+++|++ ||.+.+..+
T Consensus         4 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~~   74 (75)
T 1yjr_A            4 GVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEPSLVKI   74 (75)
T ss_dssp             CCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHHHHCEEEESSC
T ss_pred             eEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCceeecc
Confidence            35689996 79999999999999999999 7999999999999864   467889999999 999876543

>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}

Probab=99.27  E-value=1.3e-11  Score=76.25  Aligned_cols=62  Identities=18%  Similarity=0.236  Sum_probs=55.3

Q ss_pred             ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceE
Q 048021           10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYAN   71 (143)
Q Consensus        10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ae   71 (143)
                      .++.+|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|..   .++++.|.++|++ ||.++
T Consensus         2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~   69 (71)
T 2ldi_A            2 LKTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTLA   69 (71)
T ss_dssp             CEEEEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHTTTCEEE
T ss_pred             cEEEEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcc
Confidence            456789997 89999999999999999999 799999999999984   3578899999999 99864

>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A

Probab=99.27  E-value=1.4e-11  Score=79.05  Aligned_cols=65  Identities=17%  Similarity=0.209  Sum_probs=57.8

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-CCceEEeec
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-GKYANLCWV   75 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~~~   75 (143)
                      ++++|+|. |+|.+|+.+|+++|.+++|| ++.+|+..++++|...   ++++.|+++|++ ||.+.++..
T Consensus         3 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~   73 (77)
T 1y3j_A            3 SKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGATVIEN   73 (77)
T ss_dssp             EEEEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHHTSCEEEESC
T ss_pred             EEEEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEECCc
Confidence            56789996 79999999999999999999 7999999999999853   578999999999 999887643

>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A

Probab=99.26  E-value=1.7e-11  Score=76.60  Aligned_cols=60  Identities=22%  Similarity=0.278  Sum_probs=53.8

Q ss_pred             EEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee--cCHHHHHHHHhc-CCceEEe
Q 048021           14 GLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR--ANPRKLLRKLQS-GKYANLC   73 (143)
Q Consensus        14 vlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~--vdp~~Ll~aI~k-Gk~Ael~   73 (143)
                      +|+|. |+|.+|+.+|+++|++++|| ++.+|+..++++|...  .+++.|+++|++ ||.+++.
T Consensus         3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~~   67 (69)
T 2kt2_A            3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGYKATLA   67 (69)
T ss_dssp             CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTTTSEEECC
T ss_pred             EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHCCCceEeC
Confidence            57885 89999999999999999999 7999999999999753  578999999999 9988754

>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}

Probab=99.26  E-value=6.1e-11  Score=80.21  Aligned_cols=73  Identities=11%  Similarity=0.098  Sum_probs=63.4

Q ss_pred             CceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-CCceEEeecCCCCCC
Q 048021            9 AKMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-GKYANLCWVSAGNQI   81 (143)
Q Consensus         9 ~~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~~~~~~~s~   81 (143)
                      ..++++|+|. |+|.+|+.+|+++|.+++|| ++.+|+..++++|...   ++++.|+++|++ ||.+.+...+.+++.
T Consensus        14 ~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~   92 (95)
T 2kkh_A           14 KLQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLEANVRVNGETSFK   92 (95)
T ss_dssp             CSEEEEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCCCCCCSS
T ss_pred             ceEEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEecCCCcccc
Confidence            3456889996 89999999999999999999 7999999999999854   478999999999 999998877666553

>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A

Probab=99.22  E-value=4.3e-11  Score=80.94  Aligned_cols=67  Identities=15%  Similarity=0.200  Sum_probs=57.8

Q ss_pred             ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc---C-CceEEeecC
Q 048021           10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS---G-KYANLCWVS   76 (143)
Q Consensus        10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k---G-k~Ael~~~~   76 (143)
                      .++++|+|. |+|.+|+.+|+++|++++|| ++.||+..++++|..   .++++.|+++|++   | |++.++...
T Consensus         2 ~~~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~g~Ggy~~~~~~~~   77 (90)
T 2g9o_A            2 DSTATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSPGLYRVSITSEV   77 (90)
T ss_dssp             CEEEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTTSTTTCEEECCCCC
T ss_pred             CcEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhccCCCeEEEEeCCC
Confidence            367789996 89999999999999999999 799999999999985   3578899999987   5 888766543

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}

Probab=99.18  E-value=8.9e-11  Score=83.53  Aligned_cols=64  Identities=14%  Similarity=0.232  Sum_probs=57.3

Q ss_pred             ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-CCceEEe
Q 048021           10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-GKYANLC   73 (143)
Q Consensus        10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~   73 (143)
                      ..+++|+|+ |+|.+|+.+|+++|++++|| ++.+|+..++++|...   ++++.|+++|++ ||+++++
T Consensus        79 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~  148 (149)
T 2ew9_A           79 DGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASLA  148 (149)
T ss_dssp             SSEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHHTCEEECC
T ss_pred             cceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhCCCceEec
Confidence            356889996 89999999999999999999 8999999999999853   588999999999 9998753

>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A

Probab=99.16  E-value=7.3e-11  Score=75.40  Aligned_cols=64  Identities=16%  Similarity=0.142  Sum_probs=57.0

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceEEee
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYANLCW   74 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ael~~   74 (143)
                      ++.+|+|. |+|.+|+.+|+++|.+++|| ++.+|+..++++|..   .++++.|.++|++ ||.+.+..
T Consensus         3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~   72 (80)
T 1jww_A            3 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKG   72 (80)
T ss_dssp             EEEEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHHHTSEEEECC
T ss_pred             eEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCeEEecC
Confidence            46789997 79999999999999999999 799999999999974   3578999999999 99988754

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A

Probab=99.16  E-value=7.7e-11  Score=84.44  Aligned_cols=65  Identities=15%  Similarity=0.130  Sum_probs=58.3

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceEEeec
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYANLCWV   75 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ael~~~   75 (143)
                      .+++|+|+ |+|.+|+.+|+++|++++|| ++.+|+..++++|.-   .++++.|+++|++ ||++.+...
T Consensus        74 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~  144 (151)
T 1p6t_A           74 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGE  144 (151)
T ss_dssp             EEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCS
T ss_pred             cccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEcCc
Confidence            46789996 89999999999999999999 799999999999984   4689999999999 999987543

>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A

Probab=99.16  E-value=5.1e-11  Score=75.55  Aligned_cols=62  Identities=15%  Similarity=0.300  Sum_probs=52.8

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeecC
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWVS   76 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~~   76 (143)
                      ++.+|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|.+..+    .++|++ ||.+.+....
T Consensus         3 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~----~~~i~~~Gy~~~~~~~~   67 (71)
T 2aj0_A            3 EKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEAS----IQQVEQAGAFEHLKIIP   67 (71)
T ss_dssp             CEEEEEEESCCCHHHHHHHHHHHHHSTTEEEEEECCSSEEEEEEESCC----HHHHHHHHTTTTCEEEC
T ss_pred             eEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEECCCCEEEEEecCc----HHHHHHhCCCcccccCC
Confidence            36789997 89999999999999999999 799999999999997664    557788 9987665543

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}

Probab=99.14  E-value=1.4e-10  Score=88.40  Aligned_cols=71  Identities=15%  Similarity=0.213  Sum_probs=57.9

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceEEeecCCCCCC
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYANLCWVSAGNQI   81 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ael~~~~~~~s~   81 (143)
                      .+++|+|. |+|.+|+.+|+++|.+++|| ++.||+..++++|..   .++++.|+++|++ ||.+.++.....+++
T Consensus       122 ~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~  198 (202)
T 2rop_A          122 STTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVSESCSTNP  198 (202)
T ss_dssp             EEEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSCEEEC--------
T ss_pred             eEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEcCCCCCccc
Confidence            56889996 89999999999999999999 799999999999985   3588999999999 999988766544444

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}

Probab=99.00  E-value=1.8e-09  Score=76.67  Aligned_cols=65  Identities=22%  Similarity=0.224  Sum_probs=57.4

Q ss_pred             ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceEEee
Q 048021           10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYANLCW   74 (143)
Q Consensus        10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ael~~   74 (143)
                      .++++|+|+ |+|.+|+.+|+++|.+++|| ++.+++..++++|..   .++++.|.++|++ ||.+.+..
T Consensus         3 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~   73 (149)
T 2ew9_A            3 PQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVME   73 (149)
T ss_dssp             CEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEECS
T ss_pred             cEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcCCCceEeec
Confidence            457889996 79999999999999999999 799999999999975   3578899999999 99987653

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A

Probab=98.84  E-value=1e-08  Score=73.25  Aligned_cols=61  Identities=11%  Similarity=0.197  Sum_probs=53.8

Q ss_pred             ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCce
Q 048021           10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYA   70 (143)
Q Consensus        10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~A   70 (143)
                      .++.+|+|+ |+|.+|+.+|+++|.+++|| ++.+++..++++|..   .+++..|.++|++ |+.+
T Consensus         5 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~   71 (151)
T 1p6t_A            5 QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHV   71 (151)
T ss_dssp             CEEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCEE
T ss_pred             ceEEEEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHHHcCCcc
Confidence            366789997 79999999999999999999 799999999999874   3578899999999 9965

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}

Probab=98.72  E-value=3.9e-08  Score=74.70  Aligned_cols=62  Identities=16%  Similarity=0.225  Sum_probs=53.7

Q ss_pred             ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-C---CceE
Q 048021           10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-G---KYAN   71 (143)
Q Consensus        10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-G---k~Ae   71 (143)
                      .++++|+|+ |+|.+|+.+|+++|.+++|| ++.|++..++++|...   ++++.|.++|++ |   +.+.
T Consensus        19 ~~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~~~gg~~v~   89 (202)
T 2rop_A           19 VVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALPPGNFKVS   89 (202)
T ss_dssp             -CEEEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHTTSSSSCSEEE
T ss_pred             cEEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHhccCCeEEE
Confidence            457789997 89999999999999999999 7999999999999853   578899999998 4   5554

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=98.63  E-value=5.4e-08  Score=88.43  Aligned_cols=62  Identities=15%  Similarity=0.204  Sum_probs=56.9

Q ss_pred             ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceE
Q 048021           10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYAN   71 (143)
Q Consensus        10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ae   71 (143)
                      +|+++|+|+ |+|.+|+.+|+++|++++|| +++||+..++++|+-   .+++++|+++|++ ||++.
T Consensus         1 pm~~~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~Gy~~~   68 (723)
T 3j09_A            1 PMERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYGVV   68 (723)
T ss_dssp             CCCEEEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHCCEES
T ss_pred             CeeEEEEeCCCCchHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHHhcCCccc
Confidence            367899997 89999999999999999999 799999999999984   4689999999999 99975

>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1

Probab=89.70  E-value=2  Score=30.68  Aligned_cols=63  Identities=13%  Similarity=0.053  Sum_probs=41.9

Q ss_pred             CCceEEEEEEeecChhhHHHHHHHHhccCCe-eE-----EEeCCC--CEEEEEee-cCHHHHHHHHhc-CCce
Q 048021            8 SAKMTCGLKVDTNDPAWFSSMTKVLRKIKGA-SY-----TIDAEE--GMAYITGR-ANPRKLLRKLQS-GKYA   70 (143)
Q Consensus         8 s~~~tvvlkV~m~C~gC~~kIkkaL~kI~GV-sV-----~VDle~--~~VtV~G~-vdp~~Ll~aI~k-Gk~A   70 (143)
                      ...+.++|.|--.-+--.-.+.++|.+++|| .|     ++|.+.  =++||+|. +|-+.|.++|++ |--+
T Consensus         4 ~~iRRlVLDVlKPh~P~ivdlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE~~GgvI   76 (100)
T 3bpd_A            4 KGLRRLVLDVLKPHEPKTIVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGGVI   76 (100)
T ss_dssp             CSEEEEEEEEEEESCSCHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTCEE
T ss_pred             ccceEEEEEecCCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeE
Confidence            3456777777421222334677788888887 33     445553  35666685 899999999999 8654

>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*

Probab=88.91  E-value=0.61  Score=32.10  Aligned_cols=34  Identities=9%  Similarity=0.290  Sum_probs=26.4

Q ss_pred             EEEEEEeecChhhH------HHHHHHHhccCCe-eEEEeCC
Q 048021           12 TCGLKVDTNDPAWF------SSMTKVLRKIKGA-SYTIDAE   45 (143)
Q Consensus        12 tvvlkV~m~C~gC~------~kIkkaL~kI~GV-sV~VDle   45 (143)
                      .+.+.+.+++.+|.      +.|+++|++++|| +|+|++.
T Consensus        42 ~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l~   82 (103)
T 3cq1_A           42 RAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVT   82 (103)
T ss_dssp             EEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEEC
T ss_pred             EEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEe
Confidence            46677777888884      6799999999999 6777643

>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A

Probab=88.49  E-value=1.4  Score=30.56  Aligned_cols=45  Identities=18%  Similarity=0.318  Sum_probs=32.2

Q ss_pred             hhhHHHHHHHHhccCCeeE-EEeCCCCEEEEEee-cCHHHHHHHHhc
Q 048021           22 PAWFSSMTKVLRKIKGASY-TIDAEEGMAYITGR-ANPRKLLRKLQS   66 (143)
Q Consensus        22 ~gC~~kIkkaL~kI~GVsV-~VDle~~~VtV~G~-vdp~~Ll~aI~k   66 (143)
                      .+=...|.++|++++||++ .+|.+++++.|.-+ -+.+.|.+.|++
T Consensus        16 p~~~~~V~~~L~~ipgvEi~~~~~~~GkiVV~iEa~~~~~l~~~i~~   62 (95)
T 2jsx_A           16 SERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLIQTIES   62 (95)
T ss_dssp             TTSHHHHHHHHTTSTTEEEEEEETTTTEEEEEEEESSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCeEEEEecCCCCCEEEEEEeCCHHHHHHHHHH
Confidence            4557899999999999975 45777888888754 355555555544

>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0

Probab=88.01  E-value=0.51  Score=32.95  Aligned_cols=34  Identities=12%  Similarity=0.197  Sum_probs=26.5

Q ss_pred             EEEEEEeecChhh------HHHHHHHH-hccCCe-eEEEeCC
Q 048021           12 TCGLKVDTNDPAW------FSSMTKVL-RKIKGA-SYTIDAE   45 (143)
Q Consensus        12 tvvlkV~m~C~gC------~~kIkkaL-~kI~GV-sV~VDle   45 (143)
                      .+.+.+.++..+|      .+.|+++| ++++|| +|+|++.
T Consensus        45 ~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~l~   86 (108)
T 3lno_A           45 NAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVNVV   86 (108)
T ss_dssp             CEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEEEC
T ss_pred             eEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEEEE
Confidence            4667777788888      67899999 899999 6766554

>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}

Probab=87.40  E-value=0.94  Score=32.16  Aligned_cols=60  Identities=20%  Similarity=0.216  Sum_probs=39.9

Q ss_pred             ceEEEEEEe--ecChhhHHHHHHHHhccCCe-eE-----EEeCCC--CEEEEEee-cCHHHHHHHHhc-CCce
Q 048021           10 KMTCGLKVD--TNDPAWFSSMTKVLRKIKGA-SY-----TIDAEE--GMAYITGR-ANPRKLLRKLQS-GKYA   70 (143)
Q Consensus        10 ~~tvvlkV~--m~C~gC~~kIkkaL~kI~GV-sV-----~VDle~--~~VtV~G~-vdp~~Ll~aI~k-Gk~A   70 (143)
                      .+.++|.|-  ++=..= -.+.++|.+++|| .|     ++|.+.  =+++|+|. +|-+.|.++|++ |--+
T Consensus         4 irRlVLDVlKP~h~P~i-vd~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE~~Gg~I   75 (96)
T 2x3d_A            4 IRRLVLDVLKPIRGTSI-VDLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEEGCAI   75 (96)
T ss_dssp             EEEEEEEEEEESSSSCH-HHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHHHTTCEE
T ss_pred             eEEEEEEcccCCCCCCH-HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeE
Confidence            345666663  233333 3667788888887 33     445553  35666785 899999999999 8644

>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A

Probab=86.23  E-value=1.1  Score=30.78  Aligned_cols=33  Identities=15%  Similarity=0.313  Sum_probs=25.4

Q ss_pred             EEEEEEeecChhhH------HHHHHHHhccCCe-eEEEeC
Q 048021           12 TCGLKVDTNDPAWF------SSMTKVLRKIKGA-SYTIDA   44 (143)
Q Consensus        12 tvvlkV~m~C~gC~------~kIkkaL~kI~GV-sV~VDl   44 (143)
                      .+.+.+.+++.+|.      +.|+++|++++|| +|+|++
T Consensus        43 ~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l   82 (103)
T 1uwd_A           43 NVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVEL   82 (103)
T ss_dssp             EEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred             EEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEE
Confidence            56677777777774      5689999999999 677764

>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}

Probab=84.06  E-value=6.8  Score=28.20  Aligned_cols=60  Identities=10%  Similarity=0.049  Sum_probs=44.1

Q ss_pred             ceEEEEEEeecChhhHHHHHHHHhccCCeeEEEeCC-CCEEEEEe-ecCHHHHHHHHhc--CCceEE
Q 048021           10 KMTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAE-EGMAYITG-RANPRKLLRKLQS--GKYANL   72 (143)
Q Consensus        10 ~~tvvlkV~m~C~gC~~kIkkaL~kI~GVsV~VDle-~~~VtV~G-~vdp~~Ll~aI~k--Gk~Ael   72 (143)
                      -.++.|.+.   +-=.+.|-++|.++-|.++.+|.+ +|+||+.- .++.+++++.|.+  |+.++.
T Consensus        31 G~~isLnf~---da~i~~vl~~la~~tg~NiV~d~~V~G~VTl~l~~v~~~~al~~iL~~~gl~~~~   94 (128)
T 4ar0_A           31 GRKISLDFQ---DVEIRTILQILAKESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQARNLDMRQ   94 (128)
T ss_dssp             SCEEEEEEE---EEEHHHHHHHHHHTTCCEEEECTTCCCEEEEEEEEEEHHHHHHHHHHHHTEEEEE
T ss_pred             CCceEEEEe---CCCHHHHHHHHHHHHCCcEEEcCCCCceeeEeecCCCHHHHHHHHHHHcCceEEE
Confidence            344444432   334678888999999999888876 89999984 5788888888877  887763

>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1

Probab=83.39  E-value=3.1  Score=28.80  Aligned_cols=66  Identities=17%  Similarity=0.165  Sum_probs=42.7

Q ss_pred             CceEEEEEEee---c--ChhhHHHHHHHHhccCCee-EEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeecC
Q 048021            9 AKMTCGLKVDT---N--DPAWFSSMTKVLRKIKGAS-YTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWVS   76 (143)
Q Consensus         9 ~~~tvvlkV~m---~--C~gC~~kIkkaL~kI~GVs-V~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~~   76 (143)
                      .....+|+|+-   .  -+.--+.|++ |.+.-|+. ++|+-++++|+|.| .+.+.+.+|++. -.-.+.+.++
T Consensus        13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~-I~e~tGv~~IdI~eddG~V~I~g-~~~ea~~~A~~~I~~ie~~~~vp   85 (91)
T 2cpq_A           13 AAFHEEFVVREDLMGLAIGTHGSNIQQ-ARKVPGVTAIELDEDTGTFRIYG-ESADAVKKARGFLEFVEDFIQVP   85 (91)
T ss_dssp             CSEEEEEECCHHHHHHHHTTTTHHHHH-HHTSTTEEEEEEETTTTEEEEEE-SSHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CceEEEEEEChHHhhhhcCCCcHHHHH-HHHHhCCeEEEEEcCCCEEEEEE-CCHHHHHHHHHHHHhhheEEecC
Confidence            34566777762   2  2334455665 55557995 99987789999998 577777777766 4444444443

>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1

Probab=81.30  E-value=2.3  Score=30.15  Aligned_cols=62  Identities=19%  Similarity=0.276  Sum_probs=39.6

Q ss_pred             CceEEEEEEeecChhhHHHHHHHHhccCCe-e-----EEEeCCCC--EEEEEee-cCHHHHHHHHhc-CCce
Q 048021            9 AKMTCGLKVDTNDPAWFSSMTKVLRKIKGA-S-----YTIDAEEG--MAYITGR-ANPRKLLRKLQS-GKYA   70 (143)
Q Consensus         9 ~~~tvvlkV~m~C~gC~~kIkkaL~kI~GV-s-----V~VDle~~--~VtV~G~-vdp~~Ll~aI~k-Gk~A   70 (143)
                      ..+.++|.|--.-+----.+.++|.+++|| .     .++|.+..  +++|+|. +|-+.|.++|++ |--+
T Consensus         5 ~irRlVLDVlKPh~p~i~d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE~~Gg~I   76 (97)
T 2raq_A            5 GLIRIVLDILKPHEPIIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGGSI   76 (97)
T ss_dssp             SEEEEEEEEECCSCSCHHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTCEE
T ss_pred             CceEEEEEecCCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeE
Confidence            345667776421222233566677777776 2     35566544  5566675 899999999999 8654

>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A

Probab=81.25  E-value=4.7  Score=25.69  Aligned_cols=53  Identities=17%  Similarity=0.125  Sum_probs=35.0

Q ss_pred             eEEEEEEeecChhhH----HHHHHHHhccCCeeEEEeCC--------CCEEEEEeecCHHHHHHHHh
Q 048021           11 MTCGLKVDTNDPAWF----SSMTKVLRKIKGASYTIDAE--------EGMAYITGRANPRKLLRKLQ   65 (143)
Q Consensus        11 ~tvvlkV~m~C~gC~----~kIkkaL~kI~GVsV~VDle--------~~~VtV~G~vdp~~Ll~aI~   65 (143)
                      .++.|.|+-..-|+.    .+.-+.|+..-|+.+.|+.+        ++.|+|.|.  ++.+.+|+.
T Consensus         3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~--~~~v~~A~~   67 (76)
T 1dtj_A            3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS--PAATQAAQY   67 (76)
T ss_dssp             EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEES--HHHHHHHHH
T ss_pred             eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeC--HHHHHHHHH
Confidence            356677776665665    33344467767888888864        268999986  666666654

>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A

Probab=80.57  E-value=4.6  Score=26.85  Aligned_cols=53  Identities=19%  Similarity=0.273  Sum_probs=31.6

Q ss_pred             CceEEEEEEeecChhhH-----HHHHHHHhccCCeeEEEeCC-----CCEEEEEeecCHHHHHHHH
Q 048021            9 AKMTCGLKVDTNDPAWF-----SSMTKVLRKIKGASYTIDAE-----EGMAYITGRANPRKLLRKL   64 (143)
Q Consensus         9 ~~~tvvlkV~m~C~gC~-----~kIkkaL~kI~GVsV~VDle-----~~~VtV~G~vdp~~Ll~aI   64 (143)
                      +..+++|.|+-..-|+.     +.|+ .|+..-|+.+.|+..     ++.|+|.|.  ++.+.+|.
T Consensus        12 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik-~I~~~tga~I~I~~~~~~~~~~~v~I~G~--~e~v~~A~   74 (89)
T 1j5k_A           12 PIITTQVTIPKDLAGSIIGKGGQRIK-QIRHESGASIKIDEPLEGSEDRIITITGT--QDQIQNAQ   74 (89)
T ss_dssp             CEEEEEEEEEHHHHHHHHCGGGHHHH-HHHHHTCCEEEECSCCSSSSEEEEEEEEE--HHHHHHHH
T ss_pred             CeEEEEEEEChhhcceeECCCCHhHH-HHHHHhCCeEEecCCCCCCCccEEEEEcC--HHHHHHHH
Confidence            34456666664332222     3444 466667888888763     588999997  44444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d1fe0a_	66	d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX	7e-05

>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]} Length = 66

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]

 Score = 36.7 bits (85), Expect = 7e-05
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 9/63 (14%)

Query: 11 MTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKLLRKLQS-GKY 69
          MTCG            ++++VL K+ G  Y ID       I    +   LL  L+  GK 
Sbjct: 9  MTCGGCA--------EAVSRVLNKLGGVKYDIDLPNKKVCIESEHSMDTLLATLKKTGKT 60

Query: 70 ANL 72
           + 
Sbjct: 61 VSY 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d1fe0a_	66	ATX1 metallochaperone protein (ATOX1) {Human (Homo	99.82
d1qupa2	72	Copper chaperone for superoxide dismutase, N-termi	99.82
d1cc8a_	72	ATX1 metallochaperone protein (ATOX1) {Baker's yea	99.78
d1sb6a_	64	Copper chaperone {Synechocystis sp. pcc 6803, Scat	99.71
d2ggpb1	72	Copper transporter domain ccc2a {Baker's yeast (Sa	99.62
d1osda_	72	Mercuric ion binding protein MerP {Ralstonia metal	99.62
d1cpza_	68	Copper chaperone {Enterococcus hirae [TaxId: 1354]	99.61
d2aw0a_	72	Menkes copper-transporting ATPase {Human (Homo sap	99.6
d1kvja_	79	Menkes copper-transporting ATPase {Human (Homo sap	99.59
d1q8la_	84	Menkes copper-transporting ATPase {Human (Homo sap	99.59
d2qifa1	69	Copper chaperone {Bacillus subtilis, CopZ [TaxId:	99.55
d1p6ta1	72	Potential copper-translocating P-type ATPase CopA	99.54
d1p6ta2	79	Potential copper-translocating P-type ATPase CopA	99.51
d1mwza_	73	Metal ion-transporting ATPase ZntA, N-terminal dom	99.47
d2cu6a1	91	Hypothetical protein TTHB138 {Thermus thermophilus	89.39
d1uwda_	102	Hypothetical protein TM0487 {Thermotoga maritima [	89.21
d3bpda1	91	Uncharacterized protein AF1549 {Archaeoglobus fulg	89.06
d1wjka_	100	Thioredoxin-like structure containing protein C330	88.35
d2raqa1	93	Uncharacterized protein MTH889 {Methanobacterium t	87.39
d2dy1a4	77	Elongation factor G (EF-G) {Thermus thermophilus,	86.77
d1tuaa1	84	Hypothetical protein APE0754 {Aeropyrum pernix [Ta	86.01

>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]

Probab=99.82  E-value=1.8e-20  Score=123.64  Aligned_cols=64  Identities=23%  Similarity=0.315  Sum_probs=61.9

Q ss_pred             EEEEEEeecChhhHHHHHHHHhccCCeeEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeec
Q 048021           12 TCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWV   75 (143)
Q Consensus        12 tvvlkV~m~C~gC~~kIkkaL~kI~GVsV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~   75 (143)
                      +.+|+|+|+|.+|+++|+++|++++|++|.||+++++|+|+|.+++++|+++|++ ||+|+|+++
T Consensus         2 k~ef~V~M~C~~C~~~I~~aL~~~~gv~v~v~~~~~~v~V~~~~~~~~i~~~I~~~Gy~a~lig~   66 (66)
T d1fe0a_           2 KHEFSVDMTCGGCAEAVSRVLNKLGGVKYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLGL   66 (66)
T ss_dssp             EEEEEECCCSHHHHHHHHHHHHHHCSEEEEEETTTTEEEEEESSCHHHHHHHHHTTTSCEEEEEC
T ss_pred             CEEEEEccCchHHHHHHHHHHhcCCCcEEEEEcCCCEEEEEeeCCHHHHHHHHHHhCCeEEEeeC
Confidence            5789999999999999999999999999999999999999999999999999999 999999975

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.7e-20  Score=125.36  Aligned_cols=69  Identities=14%  Similarity=0.274  Sum_probs=64.5

Q ss_pred             CCCceEEEEEEeecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeec
Q 048021            7 SSAKMTCGLKVDTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWV   75 (143)
Q Consensus         7 ~s~~~tvvlkV~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~   75 (143)
                      +.....++|+|+|+|++|+++|+++|++++|| +|+||+++++|+|+|.+++++|+++|++ ||+|.|++.
T Consensus         2 ~~~~~~~~f~V~M~C~~C~~~Iek~l~~~~gV~~v~vdl~~~~v~V~~~~~~~~i~~~I~~~G~~A~l~g~   72 (72)
T d1qupa2           2 TNDTYEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGA   72 (72)
T ss_dssp             GGGCEEEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHTTCCCEEECC
T ss_pred             CCCcEEEEEEEccCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEeeCCHHHHHHHHHHhCCCEEEecC
Confidence            44556789999999999999999999999999 7999999999999999999999999999 999999863

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=5.1e-19  Score=118.31  Aligned_cols=64  Identities=17%  Similarity=0.180  Sum_probs=60.5

Q ss_pred             CCceEEEEEEeecChhhHHHHHHHHhccC-Ce-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceE
Q 048021            8 SAKMTCGLKVDTNDPAWFSSMTKVLRKIK-GA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYAN   71 (143)
Q Consensus         8 s~~~tvvlkV~m~C~gC~~kIkkaL~kI~-GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ae   71 (143)
                      +..+|.+|+|+|+|++|+++|+++|.+++ || +|+||+++++|+|.|.+++++|+++|++ ||+|.
T Consensus         1 ~~~kt~~f~V~MtC~~C~~~Ie~~L~~l~~gV~~v~v~~~~~~v~V~~~~~~~~i~~~i~~~G~~~~   67 (72)
T d1cc8a_           1 AEIKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEVR   67 (72)
T ss_dssp             CCCEEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHHTTSSCEE
T ss_pred             CCcEEEEEEECcCcHHHHHHHHHHHHcCcCceEEEEEECCCCEEEEeecCCHHHHHHHHHHHCCccC
Confidence            35678999999999999999999999995 89 8999999999999999999999999999 99986

>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]

Probab=99.71  E-value=4.5e-18  Score=110.68  Aligned_cols=61  Identities=21%  Similarity=0.210  Sum_probs=58.5

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceE
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYAN   71 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ae   71 (143)
                      |+++|+|+ |+|++|+++|+++|++++|| +|++|+++++|+|++.+++++|+++|++ ||+||
T Consensus         1 Mt~~l~V~gM~C~~C~~~Ie~~l~~~~gv~~v~v~~~~~~v~v~~~~~~~~i~~~i~~~GY~ve   64 (64)
T d1sb6a_           1 MTIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE   64 (64)
T ss_dssp             CEEEEECTTTTSSSCTHHHHHHHHHHCTTCEEEEETTTTEEEEESSSCHHHHHHHHHHHCCCCC
T ss_pred             CeEEEEECCccchhHHHHHHHHHhcCCCeeEEEccCCCCEEEEccCCCHHHHHHHHHHcCCCCC
Confidence            68899996 89999999999999999999 8999999999999999999999999999 99985

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=3.9e-16  Score=103.26  Aligned_cols=64  Identities=16%  Similarity=0.175  Sum_probs=59.6

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEE--eecCHHHHHHHHhc-CCceEEee
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYIT--GRANPRKLLRKLQS-GKYANLCW   74 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~--G~vdp~~Ll~aI~k-Gk~Ael~~   74 (143)
                      ++++|+|+ |+|++|+.+|+++|++++|| +++||+..++++|.  +.+++++|+++|++ ||+|+++.
T Consensus         2 k~v~l~V~GM~C~~C~~~Ie~~l~~~~gV~~v~V~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~a~~~~   70 (72)
T d2ggpb1           2 REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEILR   70 (72)
T ss_dssp             EEEEEECTTCCSSTTTHHHHHHHTTSTTEEEEEECTTTCEEEEEECSSCCHHHHHHHHHHTTCCCEEEE
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCHHHHHHHHHHhCCCeEEcc
Confidence            57899997 89999999999999999999 79999999999998  45899999999999 99999864

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]

Probab=99.62  E-value=5.8e-16  Score=102.44  Aligned_cols=64  Identities=20%  Similarity=0.240  Sum_probs=59.5

Q ss_pred             ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEE---eecCHHHHHHHHhc-CCceEEe
Q 048021           10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYIT---GRANPRKLLRKLQS-GKYANLC   73 (143)
Q Consensus        10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~---G~vdp~~Ll~aI~k-Gk~Ael~   73 (143)
                      .+|++|+|+ |+|++|+.+|+++|++++|| +++||+.+++|+|+   +.+++++|+++|++ ||+|+|.
T Consensus         2 tqt~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~a~v~   71 (72)
T d1osda_           2 TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSVK   71 (72)
T ss_dssp             EEEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCEEC
T ss_pred             CeEEEEEECCcccHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhcCCCeEeC
Confidence            468999997 89999999999999999999 79999999999998   45799999999999 9999974

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]

Probab=99.61  E-value=9.3e-16  Score=100.41  Aligned_cols=60  Identities=10%  Similarity=0.230  Sum_probs=56.1

Q ss_pred             EEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEE---eecCHHHHHHHHhc-CCceEEe
Q 048021           14 GLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYIT---GRANPRKLLRKLQS-GKYANLC   73 (143)
Q Consensus        14 vlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~---G~vdp~~Ll~aI~k-Gk~Ael~   73 (143)
                      +|+|+ |+|++|+.+|+++|++++|| +++||+++++|+|.   +.+++++|+++|++ ||+|+++
T Consensus         3 el~V~GM~C~~C~~~Ie~~l~~~~GV~~v~V~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~a~vi   68 (68)
T d1cpza_           3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEVI   68 (68)
T ss_dssp             EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEEEC
T ss_pred             EEEECCeEcHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECCCCCCHHHHHHHHHhhCCCcEEC
Confidence            68997 89999999999999999999 79999999999998   45799999999999 9999975

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-15  Score=100.13  Aligned_cols=63  Identities=17%  Similarity=0.212  Sum_probs=58.5

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEE---eecCHHHHHHHHhc-CCceEEe
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYIT---GRANPRKLLRKLQS-GKYANLC   73 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~---G~vdp~~Ll~aI~k-Gk~Ael~   73 (143)
                      ++++|+|+ |+|++|+.+|+++|++++|| +++||++.++|+|.   +.+++++|+++|++ ||+|.|.
T Consensus         3 ~~~~l~V~GM~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~a~l~   71 (72)
T d2aw0a_           3 QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATLS   71 (72)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSEEEEC
T ss_pred             EEEEEEECCcccHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECCCCCCHHHHHHHHHhhCCCcEeC
Confidence            56889997 79999999999999999999 79999999999998   45799999999999 9999874

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.7e-15  Score=100.75  Aligned_cols=70  Identities=17%  Similarity=0.190  Sum_probs=63.2

Q ss_pred             CCCCceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEE---eecCHHHHHHHHhc-CCceEEeec
Q 048021            6 SSSAKMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYIT---GRANPRKLLRKLQS-GKYANLCWV   75 (143)
Q Consensus         6 ~~s~~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~---G~vdp~~Ll~aI~k-Gk~Ael~~~   75 (143)
                      ++....+++|+|+ |+|.+|+.+|+++|++++|| ++.||+.+++|+|+   +.+++++|+++|++ ||+|++...
T Consensus         3 ~~~~~~~~~l~V~gm~C~~C~~~ie~~l~~~~gv~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~GY~~~~~~~   78 (79)
T d1kvja_           3 PSMGVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHNP   78 (79)
T ss_dssp             SSTTCEEEEEEEESCCSTHHHHHHHHHHHTTTTCSEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEECSC
T ss_pred             CCCCceEEEEEECCeecHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCCHHHHHHHHHhcCCCcEeCCC
Confidence            4456778999997 79999999999999999999 89999999999999   44899999999999 999988653

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.5e-15  Score=103.42  Aligned_cols=73  Identities=14%  Similarity=0.167  Sum_probs=65.2

Q ss_pred             CCCCCCceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEE---eecCHHHHHHHHhc-CCceEEeecC
Q 048021            4 SSSSSAKMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYIT---GRANPRKLLRKLQS-GKYANLCWVS   76 (143)
Q Consensus         4 ss~~s~~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~---G~vdp~~Ll~aI~k-Gk~Ael~~~~   76 (143)
                      |...+...++.|+|+ |+|++|+.+|+++|++++|| +++||+..++|+|.   +.++++.|+++|++ ||+|.+...+
T Consensus         2 s~~~~~~~~v~l~V~GMtC~~C~~~Ie~~l~~~~GV~~v~vn~~~~~v~v~~~~~~~~~~~i~~~I~~~Gy~a~~~~~~   80 (84)
T d1q8la_           2 SMAQAGEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKKQP   80 (84)
T ss_dssp             CSSSSSCEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCEECSCCT
T ss_pred             CcCCCCCEEEEEEECCeEcHHHHHHHHHHHhcCCCceEEEEECCCCEEceeecccccCHHHHHHHHHHhCCccEEcCCc
Confidence            455667778899998 79999999999999999999 89999999999998   45799999999999 9999977653

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]

Probab=99.55  E-value=8e-15  Score=95.97  Aligned_cols=61  Identities=10%  Similarity=0.201  Sum_probs=56.3

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceE
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYAN   71 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ae   71 (143)
                      .+.+|+|+ |+|.+|+.+|+++|++++|| +++||+.+++|+|..   .+++++|+++|++ ||++.
T Consensus         2 ~~~tl~V~Gm~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~~~   68 (69)
T d2qifa1           2 EQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDVA   68 (69)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEEC
T ss_pred             cEEEEEECCccCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCCHHHHHHHHHHhCCccc
Confidence            46789997 79999999999999999999 799999999999994   4799999999999 99873

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.54  E-value=7.3e-15  Score=96.74  Aligned_cols=63  Identities=13%  Similarity=0.227  Sum_probs=58.2

Q ss_pred             CCceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEE---eecCHHHHHHHHhc-CCce
Q 048021            8 SAKMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYIT---GRANPRKLLRKLQS-GKYA   70 (143)
Q Consensus         8 s~~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~---G~vdp~~Ll~aI~k-Gk~A   70 (143)
                      +...+++|+|+ |+|.+|+.+|+++|++++|| +|.||+.+++++|.   +.+++++|+++|++ ||++
T Consensus         3 s~~~~~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~v   71 (72)
T d1p6ta1           3 SEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHV   71 (72)
T ss_dssp             CCCEEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCEE
T ss_pred             CCceEEEEEECCeecHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHHhCCcc
Confidence            35678999997 79999999999999999999 89999999999997   56799999999999 9986

>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.51  E-value=1.6e-14  Score=96.90  Aligned_cols=66  Identities=15%  Similarity=0.129  Sum_probs=60.3

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceEEeecC
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYANLCWVS   76 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ael~~~~   76 (143)
                      .+++|+|+ |+|.+|+.+|+++|++++|| ++.||+..++|+|.-   .++.++|+++|++ ||+|.+.+..
T Consensus         2 ~k~~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~   73 (79)
T d1p6ta2           2 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGEQ   73 (79)
T ss_dssp             EEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCSS
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCcEEEEEEeCCCEEEEEECCCCCCHHHHHHHHHHHCCceEECCcc
Confidence            57899997 89999999999999999999 799999999999983   5799999999999 9999986554

>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Metal ion-transporting ATPase ZntA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=5.6e-14  Score=92.88  Aligned_cols=62  Identities=13%  Similarity=0.094  Sum_probs=56.1

Q ss_pred             eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee-cCHHHHHHHHhc-CCceEE
Q 048021           11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR-ANPRKLLRKLQS-GKYANL   72 (143)
Q Consensus        11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~-vdp~~Ll~aI~k-Gk~Ael   72 (143)
                      ++.+|+|+ |+|++|+.+|+++|++++|| +++||+.+++|+|... ...++|+++|++ ||.++.
T Consensus         3 ~k~~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~i~~~i~~~GY~v~~   68 (73)
T d1mwza_           3 TRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLRD   68 (73)
T ss_dssp             CCEEEECTTCCSHHHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCCCCB
T ss_pred             CEEEEEECCcCCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCHHHHHHHHHHcCCcccC
Confidence            46789997 89999999999999999999 7999999999999965 357899999999 998763

>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TTHB138
species: Thermus thermophilus [TaxId: 274]

Probab=89.39  E-value=0.23  Score=32.33  Aligned_cols=34  Identities=9%  Similarity=0.276  Sum_probs=26.6

Q ss_pred             EEEEEEeecChhh------HHHHHHHHhccCCe-eEEEeCC
Q 048021           12 TCGLKVDTNDPAW------FSSMTKVLRKIKGA-SYTIDAE   45 (143)
Q Consensus        12 tvvlkV~m~C~gC------~~kIkkaL~kI~GV-sV~VDle   45 (143)
                      .+.+.+.+++.+|      .+.|+++|++++|| +|+|.+.
T Consensus        37 ~v~v~l~lt~~~cp~~~~i~~~i~~al~~l~gv~~V~V~~~   77 (91)
T d2cu6a1          37 RAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVT   77 (91)
T ss_dssp             EEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEEC
T ss_pred             ccEEEEEcCCCCCcHHHHHHHHHHHHHHcCCCCceEEEEEE
Confidence            4666777777777      67899999999999 6776653

>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TM0487
species: Thermotoga maritima [TaxId: 2336]

Probab=89.21  E-value=0.21  Score=33.44  Aligned_cols=34  Identities=15%  Similarity=0.359  Sum_probs=26.2

Q ss_pred             EEEEEEeecChhh------HHHHHHHHhccCCe-eEEEeCC
Q 048021           12 TCGLKVDTNDPAW------FSSMTKVLRKIKGA-SYTIDAE   45 (143)
Q Consensus        12 tvvlkV~m~C~gC------~~kIkkaL~kI~GV-sV~VDle   45 (143)
                      .+.+.+.+++.+|      +..|+++|++++|| +|+|+..
T Consensus        42 ~V~v~~~lt~~~Cp~~~~i~~~i~~al~~~~gV~~v~V~i~   82 (102)
T d1uwda_          42 NVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELT   82 (102)
T ss_dssp             EEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred             ceEEEEecCCCCCchHHHHHHHHHHHHHcCCCCceEEEEEE
Confidence            4666677777777      57889999999999 6777653

>d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: MTH889-like
family: MTH889-like
domain: Uncharacterized protein AF1549
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.06  E-value=1.1  Score=29.86  Aligned_cols=61  Identities=15%  Similarity=0.120  Sum_probs=42.1

Q ss_pred             CceEEEEEEee-cChhhHHHHHHHHhccCCe-eE-----EEeCCC--CEEEEEee-cCHHHHHHHHhc-CCce
Q 048021            9 AKMTCGLKVDT-NDPAWFSSMTKVLRKIKGA-SY-----TIDAEE--GMAYITGR-ANPRKLLRKLQS-GKYA   70 (143)
Q Consensus         9 ~~~tvvlkV~m-~C~gC~~kIkkaL~kI~GV-sV-----~VDle~--~~VtV~G~-vdp~~Ll~aI~k-Gk~A   70 (143)
                      ..+.++|.|-- +-+ =.-.+.+.|.+++|| .|     ++|.+.  =+++|+|. +|-+.|.++|++ |--+
T Consensus         3 ~irRlVLDVlKPh~p-~~~~~A~~l~~~~gV~~VnitV~EiD~~t~~i~ItiEG~~idyd~i~~~IE~~Gg~I   74 (91)
T d3bpda1           3 GLRRLVLDVLKPHEP-KTIVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGGVI   74 (91)
T ss_dssp             SEEEEEEEEEEESCS-CHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTCEE
T ss_pred             ceeEEEEEeecCCCC-CHHHHHHHHhccCCcceEEEEEEEecccceEEEEEEEecCCCHHHHHHHHHHcCCeE
Confidence            34677888753 443 444588889999998 33     445553  34566685 899999999999 7643

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.35  E-value=0.63  Score=30.11  Aligned_cols=54  Identities=24%  Similarity=0.240  Sum_probs=34.1

Q ss_pred             EEEEEEeecChhhHHHHHHHHhccCCe----eEEEeCCC------------------CEEEEEeecCHHHHHHHHhc
Q 048021           12 TCGLKVDTNDPAWFSSMTKVLRKIKGA----SYTIDAEE------------------GMAYITGRANPRKLLRKLQS   66 (143)
Q Consensus        12 tvvlkV~m~C~gC~~kIkkaL~kI~GV----sV~VDle~------------------~~VtV~G~vdp~~Ll~aI~k   66 (143)
                      +++|=---.|.-|. .++..|.++..-    .+++|.++                  ++..+.|.+|+++|.++|++
T Consensus        18 ~i~lft~~~C~~C~-~a~~~L~~~~~~~~~~~v~vd~~~~~~l~~~y~~~VPvl~idg~~~~~g~~d~~~L~~~L~~   93 (100)
T d1wjka_          18 VLTLFTKAPCPLCD-EAKEVLQPYKDRFILQEVDITLPENSTWYERYKFDIPVFHLNGQFLMMHRVNTSKLEKQLRK   93 (100)
T ss_dssp             EEEEEECSSCHHHH-HHHHHTSTTSSSSEEEEEETTSSTTHHHHHHSSSSCSEEEESSSEEEESSCCHHHHHHHHHS
T ss_pred             EEEEEECCCCCChH-HHHHHHHHhhhhcceEEEecccccCHHHHHHhcccCCceeecCceEEeCCCCHHHHHHHHHH
Confidence            45553345899998 566778776432    24545443                  33344456788888888887

>d2raqa1 d.58.61.1 (A:3-95) Uncharacterized protein MTH889 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: MTH889-like
family: MTH889-like
domain: Uncharacterized protein MTH889
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.39  E-value=1.1  Score=29.96  Aligned_cols=61  Identities=20%  Similarity=0.278  Sum_probs=42.3

Q ss_pred             ceEEEEEEeecChhhHHHHHHHHhccCCe-e-----EEEeCCCC--EEEEEee-cCHHHHHHHHhc-CCce
Q 048021           10 KMTCGLKVDTNDPAWFSSMTKVLRKIKGA-S-----YTIDAEEG--MAYITGR-ANPRKLLRKLQS-GKYA   70 (143)
Q Consensus        10 ~~tvvlkV~m~C~gC~~kIkkaL~kI~GV-s-----V~VDle~~--~VtV~G~-vdp~~Ll~aI~k-Gk~A   70 (143)
                      .+.++|.|--.-+.-.-.+.+.|.+++|| .     .++|.+..  +++|+|. +|-+.|.++|++ |--+
T Consensus         4 iRRlVLDVlKPh~P~i~e~A~~l~~~~gV~~VnitV~EiD~et~~i~itiEG~~idyd~i~~~IE~~Gg~I   74 (93)
T d2raqa1           4 LIRIVLDILKPHEPIIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGGSI   74 (93)
T ss_dssp             EEEEEEEEECCSCSCHHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTCEE
T ss_pred             eEEEEEEeecCCCCCHHHHHHHHhccCCcceEEEEEEEecccceEEEEEEEecCCCHHHHHHHHHHcCCeE
Confidence            45677777543334556778888888887 2     35566544  4556675 899999999999 7643

>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: EF-G C-terminal domain-like
family: EF-G/eEF-2 domains III and V
domain: Elongation factor G (EF-G)
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=86.77  E-value=1.1  Score=28.00  Aligned_cols=62  Identities=15%  Similarity=0.177  Sum_probs=46.3

Q ss_pred             EEEEEEeecChhhHHHHHHHHhcc----CCeeEEEeCCCCEEEEEe--ecCHHHHHHHHhc-CCceEEe
Q 048021           12 TCGLKVDTNDPAWFSSMTKVLRKI----KGASYTIDAEEGMAYITG--RANPRKLLRKLQS-GKYANLC   73 (143)
Q Consensus        12 tvvlkV~m~C~gC~~kIkkaL~kI----~GVsV~VDle~~~VtV~G--~vdp~~Ll~aI~k-Gk~Ael~   73 (143)
                      .+.+.|.-.-.+=..++.++|++|    +.+.|..|.+.+...+.|  .+--+.++++|++ |-.+++-
T Consensus         5 v~~~ai~p~~~~d~~kl~~aL~~L~~eDPsl~v~~d~et~e~vl~g~GelHLei~~~rL~~~~v~v~~~   73 (77)
T d2dy1a4           5 NVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQDYGVEVEFS   73 (77)
T ss_dssp             CEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ceEEEEEECCHHHHHHHHHHHHHHHhhcCeEEEEEcCCchhheEeccccchHHHHHHHHHHcCCcEEee
Confidence            345566666677778888888877    344689999999999986  5678999999977 7666543

>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Hypothetical protein APE0754
species: Aeropyrum pernix [TaxId: 56636]

Probab=86.01  E-value=0.59  Score=30.22  Aligned_cols=42  Identities=17%  Similarity=0.220  Sum_probs=32.5

Q ss_pred             EEEEEeecChhhH----HHHHHHHhccCCeeEEEeCCCCEEEEEee
Q 048021           13 CGLKVDTNDPAWF----SSMTKVLRKIKGASYTIDAEEGMAYITGR   54 (143)
Q Consensus        13 vvlkV~m~C~gC~----~kIkkaL~kI~GVsV~VDle~~~VtV~G~   54 (143)
                      ++++|+-.+-|..    .+.-+.|+..-|+.++||.+++.|.+.+.
T Consensus         5 i~i~ip~~~ig~vIG~gG~~Ik~i~~~tg~~I~Id~d~g~v~i~~~   50 (84)
T d1tuaa1           5 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPE   50 (84)
T ss_dssp             EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEEEES
T ss_pred             EEEEeCHHHcCeeecCCchhHHHHHHHHCCEEEEEcCCCeEEEecC
Confidence            3567776665555    56667788888999999999999999864