Citrus Sinensis ID: 048043
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 742 | 2.2.26 [Sep-21-2011] | |||||||
| O64495 | 775 | Subtilisin-like protease | yes | no | 0.963 | 0.922 | 0.441 | 1e-172 | |
| O65351 | 757 | Subtilisin-like protease | no | no | 0.942 | 0.923 | 0.453 | 1e-171 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.923 | 0.937 | 0.396 | 1e-132 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.931 | 0.922 | 0.387 | 1e-126 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.509 | 0.468 | 0.297 | 5e-29 | |
| Q8NZ80 | 1150 | C5a peptidase OS=Streptoc | N/A | no | 0.526 | 0.34 | 0.244 | 2e-16 | |
| Q5X9R0 | 1184 | C5a peptidase OS=Streptoc | N/A | no | 0.524 | 0.328 | 0.245 | 2e-16 | |
| P58099 | 1181 | C5a peptidase OS=Streptoc | N/A | no | 0.524 | 0.329 | 0.245 | 4e-16 | |
| P15926 | 1167 | C5a peptidase OS=Streptoc | yes | no | 0.524 | 0.333 | 0.245 | 4e-16 | |
| P15292 | 1962 | PIII-type proteinase OS=L | yes | no | 0.514 | 0.194 | 0.283 | 9e-16 |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 606 bits (1563), Expect = e-172, Method: Compositional matrix adjust.
Identities = 339/767 (44%), Positives = 461/767 (60%), Gaps = 52/767 (6%)
Query: 20 LTSNGSDTDSLETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSI----SSSINNQPRM 75
S+ S+ +TYIV + + T + K D W+ SFL ++ R+
Sbjct: 15 FCSSSSEILQKQTYIVQLHPNSETAKTFASKFD---WHLSFLQEAVLGVEEEEEEPSSRL 71
Query: 76 LYCYKNVITGFAAKLTAEQAKAMETKEGFISAHVEKTLQLHTTHTPNFLGL--HQNSGFW 133
LY Y + I GFAA+LT +A+ + ++ + LQ+ TT++ FLGL NSG W
Sbjct: 72 LYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSYKFLGLDGFGNSGVW 131
Query: 134 KDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCE----FKGAACNNKLIGAR 189
S G+G IIGV+DTG+ P PSF D GMP P KWKG C+ F ++CN KLIGAR
Sbjct: 132 SKSRFGQGTIIGVLDTGVWPESPSFDDTGMPSIPRKWKGICQEGESFSSSSCNRKLIGAR 191
Query: 190 NFLQG-----STGEPP---------LDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGI 235
F++G S E P D GHGTHTA+T G+ V+ ANV G G A G+
Sbjct: 192 FFIRGHRVANSPEESPNMPREYISARDSTGHGTHTASTVGGSSVSMANVLGNGAGVARGM 251
Query: 236 APLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSA 295
AP AH+A+YKVC F+GC S + AA+D AI D VDVLSLSLG +P ++D +AIG+F A
Sbjct: 252 APGAHIAVYKVCWFNGCYSSDILAAIDVAIQDKVDVLSLSLGGFPIPLYDDTIAIGTFRA 311
Query: 296 IQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQP 355
+++ I V C+AGN GP S+ +N APW+ ++GA T DR A V L N + GE+L+
Sbjct: 312 MERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRLANGKLLYGESLYPG 371
Query: 356 KDFPS--KQFPLIYPGANGNVSSAQCSPGSL-SSNIRGKLVLCERGGGERTKKGQVVKDA 412
K + ++ +IY G+ S C GSL IRGK+V+C+RG R++KG+ VK+A
Sbjct: 372 KGIKNAGREVEVIYV-TGGDKGSEFCLRGSLPREEIRGKMVICDRGVNGRSEKGEAVKEA 430
Query: 413 GGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGK 472
GG+ MIL N ++N D HLLPA + Y +KAY+N+T P A I+F GTVIG+
Sbjct: 431 GGVAMILANTEINQEEDSIDVHLLPATLIGYTESVLLKAYVNATVKPKARIIFGGTVIGR 490
Query: 473 KSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENK----TNTKSTFNMVAG 528
PE+A FS+RGPS+A+P ILKPD+I PGVNI+AAWP ++ + + F +++G
Sbjct: 491 SRAPEVAQFSARGPSLANPSILKPDMIAPGVNIIAAWPQNLGPTGLPYDSRRVNFTVMSG 550
Query: 529 TSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGA 588
TSMSCPH+SG+ AL++SA+P+WSPAAIKSA+MTTAD+ GK I D PA +FA+GA
Sbjct: 551 TSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTADLYDRQGKAIKDGN-KPAGVFAIGA 609
Query: 589 GHVNPSSANDPGLIYDIQPDDYIPYLCGLNYSDQHVQDIVMINVQCSKVSGIAETE---- 644
GHVNP A +PGL+Y+IQP DYI YLC L ++ + I NV C +GI
Sbjct: 610 GHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSDILAITHKNVSC---NGILRKNPGFS 666
Query: 645 LNYPSFSVIL--GSTSQTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQK 702
LNYPS +VI G T++ R VTNVG S Y+ + APEG+ V V P+ + F +Q
Sbjct: 667 LNYPSIAVIFKRGKTTEMITRRVTNVGSPNSIYSVNVKAPEGIKVIVNPKRLVFKHVDQT 726
Query: 703 AIYSITFTRSQKTS----ALFAQGYLSWVSTK---HTVRSPIAVRFQ 742
Y + F +K A FAQG L+WV++ VRSPI+V +
Sbjct: 727 LSYRVWFVLKKKNRGGKVASFAQGQLTWVNSHNLMQRVRSPISVTLK 773
|
Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 601 bits (1549), Expect = e-171, Method: Compositional matrix adjust.
Identities = 334/737 (45%), Positives = 465/737 (63%), Gaps = 38/737 (5%)
Query: 32 TYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCYKNVITGFAAKLT 91
TYIV++ K Q +S L +WY S L SI++ +LY Y+N I GF+ +LT
Sbjct: 31 TYIVHMAK---SQMPSSFDLH-SNWYDSSL-----RSISDSAELLYTYENAIHGFSTRLT 81
Query: 92 AEQAKAMETKEGFISAHVEKTLQLHTTHTPNFLGLHQNSG-FWKDSNLGKGVIIGVMDTG 150
E+A ++ T+ G IS E +LHTT TP FLGL +++ + ++ V++GV+DTG
Sbjct: 82 QEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTADLFPEAGSYSDVVVGVLDTG 141
Query: 151 ITPGHPSFSDEGMPPPPAKWKGKCE----FKGAACNNKLIGARNFLQG--STGEP----- 199
+ P S+SDEG P P+ WKG CE F + CN KLIGAR F +G ST P
Sbjct: 142 VWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLIGARFFARGYESTMGPIDESK 201
Query: 200 ----PLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSES 255
P DD+GHGTHT++TAAG+ V GA++ G A GTA G+AP A +A+YKVC GC S
Sbjct: 202 ESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRARVAVYKVCWLGGCFSS 261
Query: 256 RVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPST 315
+ AA+D AI D V+VLS+SLG ++ D +AIG+F+A+++ I VSCSAGN GP+ S+
Sbjct: 262 DILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSS 321
Query: 316 SSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVS 375
SN APWI +VGA T DR A LGN + G +LF+ + P K P IY G N +
Sbjct: 322 LSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEALPDKLLPFIYAGNASNAT 381
Query: 376 SAQ-CSPGSL-SSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADP 433
+ C G+L ++GK+V+C+RG R +KG VVK AGG+GMIL N NG +AD
Sbjct: 382 NGNLCMTGTLIPEKVKGKIVMCDRGINARVQKGDVVKAAGGVGMILANTAANGEELVADA 441
Query: 434 HLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGI 493
HLLPA V AG+ I+ Y+ + +P A+I GTV+G K +P +A+FSSRGP+ +P I
Sbjct: 442 HLLPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITPNI 501
Query: 494 LKPDIIGPGVNILAAW-----PFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHP 548
LKPD+I PGVNILAAW P + + + + FN+++GTSMSCPH+SG+AALLKS HP
Sbjct: 502 LKPDLIAPGVNILAAWTGAAGPTGLASDSR-RVEFNIISGTSMSCPHVSGLAALLKSVHP 560
Query: 549 DWSPAAIKSAIMTTADIVSLDGKPIVDQRL-LPADMFAVGAGHVNPSSANDPGLIYDIQP 607
+WSPAAI+SA+MTTA DGKP++D P+ F GAGHV+P++A +PGLIYD+
Sbjct: 561 EWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTT 620
Query: 608 DDYIPYLCGLNYSDQHVQDIVMINVQCSKVSGIAETELNYPSFSV-ILGSTSQTYNRTVT 666
+DY+ +LC LNY+ ++ + N C + +LNYPSF+V + G + Y RTVT
Sbjct: 621 EDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAVNVDGVGAYKYTRTVT 680
Query: 667 NVGQAESSYTHKIVAP-EGVTVTVEPENISFTKKNQKAIYSITFT-RSQKTSALFAQGYL 724
+VG A +Y+ K+ + GV ++VEP ++F + N+K Y++TFT S K S + G +
Sbjct: 681 SVGGA-GTYSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNSFGSI 739
Query: 725 SWVSTKHTVRSPIAVRF 741
W KH V SP+A+ +
Sbjct: 740 EWSDGKHVVGSPVAISW 756
|
Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 473 bits (1217), Expect = e-132, Method: Compositional matrix adjust.
Identities = 290/732 (39%), Positives = 413/732 (56%), Gaps = 47/732 (6%)
Query: 25 SDTDSLETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCYKNVIT 84
SD D YIVY+ + +D + + +H + + S +L+ YK
Sbjct: 26 SDDDGKNIYIVYMGRKLEDPDSAHL-------HHRAMLEQVVGSTFAPESVLHTYKRSFN 78
Query: 85 GFAAKLTAEQAKAMETKEGFISAHVEKTLQLHTTHTPNFLGLHQNSGFWKDSNLGKGVII 144
GFA KLT E+A+ + + EG +S + + +LHTT + +FLG + S + +++
Sbjct: 79 GFAVKLTEEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLGFPLTVP--RRSQVESNIVV 136
Query: 145 GVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGA-ACNNKLIGARNFLQGSTGEP---- 199
GV+DTGI P PSF DEG PPP KWKG CE CN K+IGAR++ G P
Sbjct: 137 GVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFRCNRKIIGARSYHIGRPISPGDVN 196
Query: 200 -PLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVY 258
P D GHGTHTA+TAAG V+ AN++G GTA G PLA +A YKVC DGCS++ +
Sbjct: 197 GPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDIL 256
Query: 259 AAMDTAIDDGVDVLSLSLGAAS-VPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSS 317
AA D AI DGVD++SLS+G A+ +F D +AIGSF A+++ I S SAGN GPN T++
Sbjct: 257 AAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTA 316
Query: 318 NEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLI----YPGANGN 373
+ +PW+LSV AST DR V V++GN + G ++ F ++ +PL+ P +
Sbjct: 317 SLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSI---NTFDNQYYPLVSGRDIPNTGFD 373
Query: 374 VSSAQ-CSPGSLSSN-IRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLA 431
S+++ C+ S++ N ++GK+V+CE G + K G +LM Y A
Sbjct: 374 KSTSRFCTDKSVNPNLLKGKIVVCEASFGPH----EFFKSLDGAAGVLMTSNTRDY---A 426
Query: 432 DPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASP 491
D + LP+ + + YI S SP ATI FK T I S P + SFSSRGP+ A+
Sbjct: 427 DSYPLPSSVLDPNDLLATLRYIYSIRSPGATI-FKSTTILNASAPVVVSFSSRGPNRATK 485
Query: 492 GILKPDIIGPGVNILAAWP-FSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDW 550
++KPDI GPGV ILAAWP + + FN+++GTSMSCPH++G+A +K+ +P W
Sbjct: 486 DVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTW 545
Query: 551 SPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSANDPGLIYDIQPDDY 610
SPAAIKSA+MTTA P+ + R P FA G+GHVNP A PGL+YD DY
Sbjct: 546 SPAAIKSALMTTA-------SPM-NARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDY 597
Query: 611 IPYLCGLNYSDQHVQDIVMINVQCSKVSGIAETELNYPSFSVILGST---SQTYNRTVTN 667
+ +LCG Y+ Q V+ I C+ + +LNYPSF + + + +Q +NRT+T+
Sbjct: 598 VKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTS 657
Query: 668 VGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRSQKTSALFAQGYLSWV 727
V S+Y I AP+G+T++V P +SF + +++T S K L W
Sbjct: 658 VAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSIK--GFVVSASLVWS 715
Query: 728 STKHTVRSPIAV 739
H VRSPI +
Sbjct: 716 DGVHYVRSPITI 727
|
Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust.
Identities = 293/757 (38%), Positives = 423/757 (55%), Gaps = 66/757 (8%)
Query: 14 FSPAFALTSNGSDTDSLETYIVYV-RKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQ 72
SP +A + D + + YI+Y+ +PD + T ++L S ++IS +
Sbjct: 22 ISPRYA---SAEDEHAKDFYIIYLGDRPDNTEETIKTHINLLS------SLNISQE-EAK 71
Query: 73 PRMLYCYKNVITGFAAKLTAEQAKAMETKEGFISAHVEKTLQLHTTHTPNFLGLHQNSGF 132
R +Y Y FAAKL+ +AK M E +S + +LHTT + +F+GL +
Sbjct: 72 ERKVYSYTKAFNAFAAKLSPHEAKKMMEMEEVVSVSRNQYRKLHTTKSWDFVGLPLTAK- 130
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKC----EFKGAACNNKLIGA 188
+ + VIIGV+DTGITP SF D G+ PPPAKWKG C F G CNNK+IGA
Sbjct: 131 -RHLKAERDVIIGVLDTGITPDSESFLDHGLGPPPAKWKGSCGPYKNFTG--CNNKIIGA 187
Query: 189 RNFLQGST---GE--PPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAI 243
+ F GE P+D +GHGTHT++T AG V A+++G A+GTA G P A LA+
Sbjct: 188 KYFKHDGNVPAGEVRSPIDIDGHGTHTSSTVAGVLVANASLYGIANGTARGAVPSARLAM 247
Query: 244 YKVC-DFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFV 302
YKVC GC++ + A + AI DGV+++S+S+G + D +++GSF A++K I
Sbjct: 248 YKVCWARSGCADMDILAGFEAAIHDGVEIISISIGGPIADYSSDSISVGSFHAMRKGILT 307
Query: 303 SCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGE--ALFQPKDFPS 360
SAGN+GP+ T +N PWIL+V AS DR+ + ++LGN + G ++F PK +
Sbjct: 308 VASAGNDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGKSFSGMGISMFSPK---A 364
Query: 361 KQFPLI-----YPGANGNVSSAQCSPGSL-SSNIRGKLVLCERGGG--ERTKKGQVVKDA 412
K +PL+ + + C SL ++GK+++C GGG E T +K
Sbjct: 365 KSYPLVSGVDAAKNTDDKYLARYCFSDSLDRKKVKGKVMVCRMGGGGVEST-----IKSY 419
Query: 413 GGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGK 472
GG G I+++D+ Y A + PA V+ + G+ I YINST S A+ V + T
Sbjct: 420 GGAGAIIVSDQ---YLDNAQIFMAPATSVNSSVGDIIYRYINSTRS--ASAVIQKTRQVT 474
Query: 473 KSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVE----NKTNTKSTFNMVAG 528
P +ASFSSRGP+ S +LKPDI PG++ILAA+ + S F +++G
Sbjct: 475 IPAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLDGDTQFSKFTILSG 534
Query: 529 TSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGA 588
TSM+CPH++GVAA +KS HPDW+PAAIKSAI+T+A KPI +R+ FA G
Sbjct: 535 TSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSA-------KPI-SRRVNKDAEFAYGG 586
Query: 589 GHVNPSSANDPGLIYDIQPDDYIPYLCGLNYSDQHVQDIV-MINVQCSK-VSGIAETELN 646
G +NP A PGL+YD+ Y+ +LCG Y+ + +V +V CS V G+ LN
Sbjct: 587 GQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHDSLN 646
Query: 647 YPSFSVILG----STSQTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQK 702
YP+ + L ST + R VTNVG S YT + AP+GV +TVEP+++SF+K +QK
Sbjct: 647 YPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKASQK 706
Query: 703 AIYSITFTRSQKTSALFAQGYLSWVSTKHTVRSPIAV 739
+ + Q T G L W S +H+VRSPI +
Sbjct: 707 RSFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSPIVI 743
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (326), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 206/447 (46%), Gaps = 69/447 (15%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
W GKG+ + ++DTG+ HP K ++KG + +
Sbjct: 174 WDLGYTGKGIKVAIIDTGVEYNHPDLK-----------KNFGQYKGYDFVDNDYDPK--- 219
Query: 193 QGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGC 252
+ TG+P + HGTH A T A N GT G+AP A L Y+V G
Sbjct: 220 ETPTGDPRGEATDHGTHVAGTVAAN------------GTIKGVAPDATLLAYRVLGPGGS 267
Query: 253 SESR-VYAAMDTAIDDGVDVLSLSLG-AASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEG 310
+ V A ++ A+ DG DV++LSLG + + P + A+ A+ + + S GN G
Sbjct: 268 GTTENVIAGVERAVQDGADVMNLSLGNSLNNPDWATSTALDW--AMSEGVVAVTSNGNSG 325
Query: 311 PNPST-----SSNEAPWILSVGAS--------TTDRSIVASVELGNQAVYDGEALFQPKD 357
PN T +S EA +SVGA+ T S ++ +G D +AL
Sbjct: 326 PNGWTVGSPGTSREA---ISVGATQLPLNEYAVTFGSYSSAKVMGYNKEDDVKAL----- 377
Query: 358 FPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGM 417
+K+ L+ G + A+ G ++ GK+ + +RG K K AG IGM
Sbjct: 378 -NNKEVELVEAG----IGEAKDFEGK---DLTGKVAVVKRGSIAFVDKADNAKKAGAIGM 429
Query: 418 ILMNDKLNGYSTLADPHL-LPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTP 476
++ N+ L+G P + +P + +S GE + +++ + FK TV K
Sbjct: 430 VVYNN-LSGEIEANVPGMSVPTIKLSLEDGEKL---VSALKAGETKTTFKLTV-SKALGE 484
Query: 477 ELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHL 536
++A FSSRGP + ++KPDI PGVNI++ P + + + GTSM+ PH+
Sbjct: 485 QVADFSSRGP-VMDTWMIKPDISAPGVNIVSTIP---THDPDHPYGYGSKQGTSMASPHI 540
Query: 537 SGVAALLKSAHPDWSPAAIKSAIMTTA 563
+G A++K A P WS IK+AIM TA
Sbjct: 541 AGAVAVIKQAKPKWSVEQIKAAIMNTA 567
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q8NZ80|C5AP_STRP8 C5a peptidase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 114/467 (24%), Positives = 208/467 (44%), Gaps = 76/467 (16%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAA----------CNNKLIGA 188
G G ++ V+D G H ++ A+++ K + + A N+K+
Sbjct: 121 GAGTVVAVIDAGFDKNHEAW--RLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYY 178
Query: 189 RNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCD 248
++ G+ +D E HGTH + +GN + + +G P A L + +V
Sbjct: 179 HDY--SKDGKTAVDQE-HGTHVSGILSGNAPSETKEPYRLEGAM----PEAQLLLMRVEI 231
Query: 249 FDGCSE-SRVYA-AMDTAIDDGVDVLSLSLGAASVPF--FEDPLAIGSFSAIQKEIFVSC 304
+G ++ +R YA A+ A++ G V+++S G A++ + D A K + +
Sbjct: 232 VNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVT 291
Query: 305 SAGNE-----------GPNPST----SSNEAPWILSVGASTTDRSIV--ASVELGNQAVY 347
SAGN+ +P + A L+V + + D+ + A+V+ +Q
Sbjct: 292 SAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDK 351
Query: 348 DGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQ 407
+ L + P+K + Y AN + +++GK+ L ERG + K
Sbjct: 352 EMPVLSTNRFEPNKAYDYAY--ANRGMKEDDFK------DVKGKIALIERGDIDFKDKIA 403
Query: 408 VVKDAGGIGMILMNDKLNGYS-TLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFK 466
K AG +G+++ +++ G+ L + +PA +S G +K +P TI F
Sbjct: 404 NAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLK------ENPQKTITFN 457
Query: 467 GT--VIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFN 524
T V+ S +L+ FSS G + + G +KPDI PG +IL+ SV N + +
Sbjct: 458 ATPKVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILS----SVAN-----NKYA 506
Query: 525 MVAGTSMSCPHLSGVAALLKS----AHPDWSPAA----IKSAIMTTA 563
++GTSMS P ++G+ LL+ +PD +P+ K +M++A
Sbjct: 507 KLSGTSMSAPLVAGIMGLLQKQYEIQYPDMTPSERLDLAKKVLMSSA 553
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M18 (taxid: 301451) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 212/469 (45%), Gaps = 80/469 (17%)
Query: 139 GKGVIIGVMDTGITPGHPSF--SDEGMPPPPAKWKGKCEFKGAA----------CNNKLI 186
G G ++ V+D G H ++ +D+ A+++ K + + A N+K+
Sbjct: 121 GAGTVVAVIDAGFDKNHEAWRLTDKTK----ARYQSKEDLEKAKKEHGITYGEWVNDKIA 176
Query: 187 GARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKV 246
++ G+ +D E HGTH + +GN + + +G P A L + +V
Sbjct: 177 YYHDY--SKDGKTAVDQE-HGTHVSGILSGNAPSETKEPYRLEGAM----PEAQLLLMRV 229
Query: 247 CDFDGCSE-SRVYA-AMDTAIDDGVDVLSLSLGAASVPF--FEDPLAIGSFSAIQKEIFV 302
+G ++ +R YA A+ A++ G V+++S G A++ + D A K + +
Sbjct: 230 EIVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSI 289
Query: 303 SCSAGNE-----------GPNPST----SSNEAPWILSVGASTTDRSIV--ASVELGNQA 345
SAGN+ +P + A L+V + + D+ + A+V+ +Q
Sbjct: 290 VTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQ 349
Query: 346 VYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKK 405
+ L + P+K + Y AN + +++GK+ L ERG + K
Sbjct: 350 DKEMPVLSTNRFEPNKAYDYAY--ANRGMKEDDFK------DVKGKIALIERGDIDFKDK 401
Query: 406 GQVVKDAGGIGMILMNDKLNGYS-TLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIV 464
K AG +G+++ +++ G+ L + +PA +S G +K +P TI
Sbjct: 402 IANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLK------ENPQKTIT 455
Query: 465 FKGT--VIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKST 522
F T V+ S +L+ FSS G + + G +KPDI PG +IL+ SV N +
Sbjct: 456 FNATPKVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILS----SVAN-----NK 504
Query: 523 FNMVAGTSMSCPHLSGVAALLK----SAHPDWSPAA----IKSAIMTTA 563
+ ++GTSMS P ++G+ LL+ + +PD +P+ K +M++A
Sbjct: 505 YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSA 553
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P58099|C5AP_STRP1 C5a peptidase OS=Streptococcus pyogenes serotype M1 GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 212/469 (45%), Gaps = 80/469 (17%)
Query: 139 GKGVIIGVMDTGITPGHPSF--SDEGMPPPPAKWKGKCEFKGAA----------CNNKLI 186
G G ++ V+D G H ++ +D+ A+++ K + + A N+K+
Sbjct: 121 GAGTVVAVIDAGFDKNHEAWRLTDKTK----ARYQSKEDLEKAKKEHGITYGEWVNDKVA 176
Query: 187 GARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKV 246
++ G+ +D E HGTH + +GN + + +G P A L + +V
Sbjct: 177 YYHDY--SKDGKTAVDQE-HGTHVSGILSGNAPSETKEPYRLEGAM----PEAQLLLMRV 229
Query: 247 CDFDGCSE-SRVYA-AMDTAIDDGVDVLSLSLGAASVPF--FEDPLAIGSFSAIQKEIFV 302
+G ++ +R YA A+ A++ G V+++S G A++ + D A K + +
Sbjct: 230 EIVNGLADYARNYAQAIIDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSI 289
Query: 303 SCSAGNE-----------GPNPST----SSNEAPWILSVGASTTDRSIV--ASVELGNQA 345
SAGN+ +P + A L+V + + D+ + A+V+ +Q
Sbjct: 290 VTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQ 349
Query: 346 VYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKK 405
+ L + P+K + Y AN + +++GK+ L ERG + K
Sbjct: 350 DKEMPVLSTNRFEPNKAYDYAY--ANRGMKEDDFK------DVKGKIALIERGDIDFKDK 401
Query: 406 GQVVKDAGGIGMILMNDKLNGYS-TLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIV 464
K AG +G+++ +++ G+ L + +PA +S G +K +P TI
Sbjct: 402 IANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLK------ENPQKTIT 455
Query: 465 FKGT--VIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKST 522
F T V+ S +L+ FSS G + + G +KPDI PG +IL+ SV N +
Sbjct: 456 FNATPKVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILS----SVAN-----NK 504
Query: 523 FNMVAGTSMSCPHLSGVAALLK----SAHPDWSPAA----IKSAIMTTA 563
+ ++GTSMS P ++G+ LL+ + +PD +P+ K +M++A
Sbjct: 505 YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSA 553
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M1 (taxid: 301447) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P15926|C5AP_STRPY C5a peptidase OS=Streptococcus pyogenes GN=scpA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 211/469 (44%), Gaps = 80/469 (17%)
Query: 139 GKGVIIGVMDTGITPGHPSF--SDEGMPPPPAKWKGKCEFKGAA----------CNNKLI 186
G G ++ V+D G H ++ +D+ A+++ K + + A N+K+
Sbjct: 121 GAGTVVAVIDAGFDKNHEAWRLTDKTK----ARYQSKEDLEKAKKEHGITYGEWVNDKVA 176
Query: 187 GARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKV 246
++ G+ +D E HGTH + +GN + + +G P A L + +V
Sbjct: 177 YYHDY--SKDGKTAVDQE-HGTHVSGILSGNAPSETKEPYRLEGAM----PEAQLLLMRV 229
Query: 247 CDFDGCSE-SRVYA-AMDTAIDDGVDVLSLSLGAASVPF--FEDPLAIGSFSAIQKEIFV 302
+G ++ +R YA A+ A++ G V+++S G A++ + D A K + +
Sbjct: 230 EIVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSI 289
Query: 303 SCSAGNE-----------GPNPST----SSNEAPWILSVGASTTDRSIV--ASVELGNQA 345
SAGN+ +P + A L+V + + D+ + A V+ +Q
Sbjct: 290 VTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAMVKTDDQQ 349
Query: 346 VYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKK 405
+ L + P+K + Y AN + +++GK+ L ERG + K
Sbjct: 350 DKEMPVLSTNRFEPNKAYDYAY--ANRGMKEDDFK------DVKGKIALIERGDIDFKDK 401
Query: 406 GQVVKDAGGIGMILMNDKLNGYS-TLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIV 464
K AG +G+++ +++ G+ L + +PA +S G +K +P TI
Sbjct: 402 VANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLK------DNPQKTIT 455
Query: 465 FKGT--VIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKST 522
F T V+ S +L+ FSS G + + G +KPDI PG +IL+ SV N +
Sbjct: 456 FNATPKVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILS----SVAN-----NK 504
Query: 523 FNMVAGTSMSCPHLSGVAALLK----SAHPDWSPAA----IKSAIMTTA 563
+ ++GTSMS P ++G+ LL+ + +PD +P+ K +M++A
Sbjct: 505 YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSA 553
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes (taxid: 1314) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P15292|P3P_LACLS PIII-type proteinase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=prtP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 86.3 bits (212), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 129/455 (28%), Positives = 200/455 (43%), Gaps = 73/455 (16%)
Query: 139 GKGVIIGVMDTGITPGHPSF-----SDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQ 193
G+G ++ V+D+GI P H D + + G N+K+ N+
Sbjct: 208 GEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEKFTDTAKHGRYFNSKVPYGFNYAD 267
Query: 194 GS-TGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTA---VGIAPLAHLAIYKVCDF 249
+ T DE HG H A + GAN G D A VG+AP A L KV
Sbjct: 268 NNDTITDDTVDEQHGMHVAG------IIGAN--GTGDDPAKSVVGVAPEAQLLAMKVFTN 319
Query: 250 DGCSESRVYAAMDTAIDD----GVDVLSLSLGAAS-VPFFEDPLAIGSFSAIQKEIFVSC 304
S + A + +AI+D G DVL++SLG+ S EDP +A +
Sbjct: 320 SDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPELAAVQNANESGTAAVI 379
Query: 305 SAGNEGPNPSTSS--NEAPWILS----VGASTTDR--SIVASVE---LGNQAVY--DGEA 351
SAGN G + S + N+ + L VG+ T R + VAS E + QAV DG
Sbjct: 380 SAGNSGTSGSATEGVNKDYYGLQDNEMVGSPGTSRGATTVASAENTDVITQAVTITDGTG 439
Query: 352 L-FQPK-----------DFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGG 399
L P+ F K+F I A+GN+S + +++ +GK+ + +RG
Sbjct: 440 LQLGPETIQLSSHDFTGSFDQKKF-YIVKDASGNLSKGALA--DYTADAKGKIAIVKRGE 496
Query: 400 GERTKKGQVVKDAGGIGMILMNDKLNGYST----LADPHLLPAVHVSYAAGESIKAYINS 455
K + + AG G+I++N +G +T +A P +S G+ + ++
Sbjct: 497 FSFDDKQKYAQAAGAAGLIIVN--TDGTATPMTSIALTTTFPTFGLSSVTGQKLVDWV-- 552
Query: 456 TSSPNATIVFKGTVI----GKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPF 511
T+ P+ ++ K T+ K + +++ F+S GP S KPDI PG NI W
Sbjct: 553 TAHPDDSLGVKITLAMLPNQKYTEDKMSDFTSYGP--VSNLSFKPDITAPGGNI---W-- 605
Query: 512 SVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSA 546
T + + ++GTSM+ P ++G ALLK A
Sbjct: 606 ----STQNNNGYTNMSGTSMASPFIAGSQALLKQA 636
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (strain SK11) (taxid: 272622) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 742 | ||||||
| 225426706 | 740 | PREDICTED: subtilisin-like protease SDD1 | 0.990 | 0.993 | 0.632 | 0.0 | |
| 225426708 | 772 | PREDICTED: subtilisin-like protease SDD1 | 0.962 | 0.924 | 0.642 | 0.0 | |
| 255537203 | 758 | Xylem serine proteinase 1 precursor, put | 0.959 | 0.939 | 0.665 | 0.0 | |
| 224071656 | 773 | predicted protein [Populus trichocarpa] | 0.959 | 0.921 | 0.658 | 0.0 | |
| 225426710 | 755 | PREDICTED: subtilisin-like protease SDD1 | 0.985 | 0.968 | 0.621 | 0.0 | |
| 224058637 | 698 | predicted protein [Populus trichocarpa] | 0.929 | 0.988 | 0.656 | 0.0 | |
| 255537205 | 767 | Cucumisin precursor, putative [Ricinus c | 0.967 | 0.936 | 0.622 | 0.0 | |
| 225426704 | 744 | PREDICTED: subtilisin-like protease SDD1 | 0.978 | 0.975 | 0.612 | 0.0 | |
| 255537183 | 738 | Xylem serine proteinase 1 precursor, put | 0.951 | 0.956 | 0.631 | 0.0 | |
| 224071660 | 708 | predicted protein [Populus trichocarpa] | 0.928 | 0.973 | 0.642 | 0.0 |
| >gi|225426706|ref|XP_002275429.1| PREDICTED: subtilisin-like protease SDD1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 986 bits (2548), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/742 (63%), Positives = 586/742 (78%), Gaps = 7/742 (0%)
Query: 6 IGLIFSLTFSPAFALTSNGSDTDSLETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSI 65
+G++F L F + +D +TY+++V+ P+ ++ + +L+SWY SF+P S+
Sbjct: 1 MGIVFLLAFICMSGFSPAIADKTQFKTYVIHVKHPNNEEVAEA--QNLESWYKSFMPTSM 58
Query: 66 SSSINNQPRMLYCYKNVITGFAAKLTAEQAKAMETKEGFISAHVEKTLQLHTTHTPNFLG 125
++ + QPR+++ Y++V+TGFAA+LT ++ AM+ K+GF+SA EK LHTTHTP FLG
Sbjct: 59 TADSDQQPRIVHSYQHVMTGFAARLTEDEVNAMKEKDGFVSARPEKIFHLHTTHTPGFLG 118
Query: 126 LHQNSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKL 185
LH+ SGFWK SNLGKGVIIGV+DTG+ P H SFSD GMPPPPAKWKGKCEFKG +CNNKL
Sbjct: 119 LHKGSGFWKGSNLGKGVIIGVLDTGVLPDHVSFSDAGMPPPPAKWKGKCEFKGTSCNNKL 178
Query: 186 IGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYK 245
IGARNF STG PP D+EGHGTHTA+TAAGNFV A+VFG A GTAVG+AP AHLAIYK
Sbjct: 179 IGARNFDSESTGTPPSDEEGHGTHTASTAAGNFVKHASVFGNAKGTAVGMAPHAHLAIYK 238
Query: 246 VCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCS 305
VC GC+ S + AA+D AI+DGVDVLSLSLG S PF EDP+A+G+F+A +K IFVSCS
Sbjct: 239 VCSESGCAGSDILAALDAAIEDGVDVLSLSLGGQSFPFHEDPIALGAFAATRKGIFVSCS 298
Query: 306 AGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPL 365
AGNEGP ST SNEAPWIL+V AST DRSI A V+LGN +DGE+LFQP+DFPS+Q PL
Sbjct: 299 AGNEGPTNSTLSNEAPWILTVAASTMDRSIKAMVKLGNGKNFDGESLFQPRDFPSEQLPL 358
Query: 366 IYPGANGNVSSAQCSPGSLSS-NIRGKLVLCERGGG-ERTKKGQVVKDAGGIGMILMNDK 423
+Y GA N SSA C GSL +++GK+V+C+RGGG R KG+ VK+AGG MIL N K
Sbjct: 359 VYAGAGSNASSAFCGEGSLKDLDVKGKVVVCDRGGGISRIDKGKEVKNAGGAAMILTNGK 418
Query: 424 LNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSS 483
+G+STLADPH LPA HV Y+AG SIKAYINS++ P AT++FKGT+IGK + PE+ SFSS
Sbjct: 419 PDGFSTLADPHSLPAAHVGYSAGLSIKAYINSSNKPTATLLFKGTIIGKSAAPEITSFSS 478
Query: 484 RGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALL 543
RGPS+ASPGILKPDI GPGV++LAAWP SV+N+T++K FNM++GTSMSCPHLSG+AALL
Sbjct: 479 RGPSLASPGILKPDITGPGVSVLAAWPSSVDNRTDSKVAFNMISGTSMSCPHLSGIAALL 538
Query: 544 KSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSANDPGLIY 603
KS+HP+WSPAAIKSAIMTTAD+++L G PI+D+ PAD+FAVGAGHVNPS ANDPGLIY
Sbjct: 539 KSSHPEWSPAAIKSAIMTTADVLNLKGDPILDETHEPADVFAVGAGHVNPSRANDPGLIY 598
Query: 604 DIQPDDYIPYLCGLNYSDQHVQDIVMINVQCSKVSGIAETELNYPSFSVILGSTSQTYNR 663
DIQP+DYIPYLCGL Y+D V+ I+ VQCSK S I E +LNYPSFSV +GS++ R
Sbjct: 599 DIQPNDYIPYLCGLGYNDTQVRAIIRHKVQCSKESSIPEAQLNYPSFSVAMGSSALKLQR 658
Query: 664 TVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRS---QKTSALFA 720
TVTNVG+A++SY KI AP+GV V+V+P + FT+ NQK Y++TF R + S FA
Sbjct: 659 TVTNVGEAKASYIVKISAPQGVDVSVKPRKLDFTQTNQKKTYTVTFERKDDGKTGSKPFA 718
Query: 721 QGYLSWVSTKHTVRSPIAVRFQ 742
QG+L WVS KH+VRSPI+V+F+
Sbjct: 719 QGFLEWVSAKHSVRSPISVKFE 740
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426708|ref|XP_002275452.1| PREDICTED: subtilisin-like protease SDD1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 966 bits (2498), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/722 (64%), Positives = 574/722 (79%), Gaps = 8/722 (1%)
Query: 26 DTDSLETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCYKNVITG 85
++D L+TYIV+V++ + T S L+ SWY SFLPV+ +SS N + R++Y Y+NV+ G
Sbjct: 54 ESDHLQTYIVHVKRTHRRVFTKSDGLE--SWYESFLPVATASS-NRKQRIVYSYRNVLNG 110
Query: 86 FAAKLTAEQAKAMETKEGFISAHVEKTLQLHTTHTPNFLGLHQNSGFWKDSNLGKGVIIG 145
FAAKLTA++ KAME K+GF+SA ++ L LHTTH+P+FLGLHQ GFWK SN GKGVIIG
Sbjct: 111 FAAKLTAQEVKAMEEKDGFVSARPQRILPLHTTHSPSFLGLHQELGFWKGSNYGKGVIIG 170
Query: 146 VMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEG 205
V+DTG+ P HPSFSDEG+PPPPAKWKGKC+F +CNNK+IGARNF G+ PP+D+EG
Sbjct: 171 VLDTGLFPDHPSFSDEGLPPPPAKWKGKCDFNWTSCNNKIIGARNFDSGAEAVPPIDEEG 230
Query: 206 HGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAI 265
HGTHTA+TAAGNFV A+ G A+GTAVG+AP AHLAIYKVC GC+++ + AA+DTAI
Sbjct: 231 HGTHTASTAAGNFVPNADALGNANGTAVGMAPFAHLAIYKVCSEFGCADTDILAALDTAI 290
Query: 266 DDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILS 325
+DGVDVLSLSLG S PFF D +A+G+FSAIQK IFVSCSAGN GP + SNEAPWIL+
Sbjct: 291 EDGVDVLSLSLGGGSAPFFADSIALGAFSAIQKGIFVSCSAGNSGPLNGSLSNEAPWILT 350
Query: 326 VGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLS 385
VGAST DR I+A+ LGN +DGE+LFQP DFPS PL+Y GANGN SSA C+P SL
Sbjct: 351 VGASTIDRKIMATATLGNGEEFDGESLFQPSDFPSTLLPLVYAGANGNASSALCAPESLK 410
Query: 386 S-NIRGKLVLCERGGG-ERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSY 443
++ GK+V+C+RGGG R KGQ VKDAGG MIL ND+LNG+STL D H+LPA HVSY
Sbjct: 411 DVDVAGKVVVCDRGGGIGRIAKGQEVKDAGGAAMILTNDELNGFSTLVDAHVLPATHVSY 470
Query: 444 AAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGV 503
AAG IK+YI S S+P ATIVFKGT+IG + PE+ SFSSRGPS+ SPGILKPDIIGPGV
Sbjct: 471 AAGLKIKSYIKSDSAPTATIVFKGTIIGVPTAPEVTSFSSRGPSLESPGILKPDIIGPGV 530
Query: 504 NILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTA 563
+ILAAWPF +EN T +K TFN+++GTSMSCPHLSG+AAL+KSAHPDWSPAAIKSAI+TTA
Sbjct: 531 SILAAWPFPLENDTTSKPTFNVISGTSMSCPHLSGIAALIKSAHPDWSPAAIKSAIITTA 590
Query: 564 DIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSANDPGLIYDIQPDDYIPYLCGLNYSDQH 623
D+ +L+ KPI+D+ PAD+FA GAGHVNPS+ANDPGLIYD++PDDYIPYLCGL Y+D+
Sbjct: 591 DLHNLENKPIIDETFQPADLFATGAGHVNPSAANDPGLIYDLEPDDYIPYLCGLGYTDEE 650
Query: 624 VQDIVMINVQCSKVSGIAETELNYPSFSVILGSTSQTYNRTVTNVGQAESSYTHKIVAPE 683
V IV ++CS+ S I E +LNYPSFS+ LG +S TY+RTVTNVG A SSY+ +I+AP
Sbjct: 651 VGLIVNRTLKCSEESSIPEAQLNYPSFSIALGPSSGTYSRTVTNVGAANSSYSVQILAPS 710
Query: 684 GVTVTVEPENISFTKKNQKAIYSITFTRSQ---KTSALFAQGYLSWVSTKHTVRSPIAVR 740
GV V+V P+ + FT+ NQK Y ++F+R+ + FAQG+L WVS H+VRSPI+V
Sbjct: 711 GVEVSVNPDKLEFTEVNQKITYMVSFSRTSAGGEGGKPFAQGFLKWVSDSHSVRSPISVM 770
Query: 741 FQ 742
F+
Sbjct: 771 FE 772
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537203|ref|XP_002509668.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223549567|gb|EEF51055.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 962 bits (2488), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/721 (66%), Positives = 567/721 (78%), Gaps = 9/721 (1%)
Query: 27 TDSLETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCYKNVITGF 86
+ +LETYIV+V KP + S ++ +WY SFLP S+S N Q R+LY Y+NV++GF
Sbjct: 37 SSNLETYIVFVTKPPVGASKKSQVIE--TWYQSFLPARKSNS-NQQQRILYSYRNVVSGF 93
Query: 87 AAKLTAEQAKAMETKEGFISAHVEKTLQLHTTHTPNFLGLHQNSGFWKDSNLGKGVIIGV 146
AAKLTAE+AK ME K+GF+SA +K LHTTH+PNFLGLHQN G W +SN GKGVIIGV
Sbjct: 94 AAKLTAEEAKFMEEKDGFVSARPQKIFPLHTTHSPNFLGLHQNLGLWGNSNYGKGVIIGV 153
Query: 147 MDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQG---STGEPPLDD 203
+DTGITP HPSFSDEGMP PPAKWKGKCEF G ACNNKLIGAR F S P DD
Sbjct: 154 LDTGITPDHPSFSDEGMPSPPAKWKGKCEFNGTACNNKLIGARTFQSDEHPSGDMEPFDD 213
Query: 204 EGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDT 263
GHGTHTA+TAAGNFV+GA+VFG A+GTAVG+APLAHLA+YKVC GCSES + AAMDT
Sbjct: 214 VGHGTHTASTAAGNFVDGASVFGNANGTAVGMAPLAHLAMYKVCSDFGCSESDILAAMDT 273
Query: 264 AIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWI 323
A+++GVD+LSLSLG S PF D +A+G+F AIQ IFVSCSAGN GP+ T SNEAPWI
Sbjct: 274 AVEEGVDILSLSLGGGSAPFSADGIAVGAFGAIQNGIFVSCSAGNSGPDNYTLSNEAPWI 333
Query: 324 LSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGS 383
L+VGAST DRSI A+V+LGN + GE+LFQP+ +PLIYPG NGN S+A C+ S
Sbjct: 334 LTVGASTIDRSIRATVKLGNNEEFFGESLFQPQLSTQNFWPLIYPGKNGNQSAAVCAEDS 393
Query: 384 L-SSNIRGKLVLCERGG-GERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHV 441
L SS + GK+VLC+RGG R +KG+VVKDAGGIGMIL+N++ +GYSTLAD H+LPA HV
Sbjct: 394 LESSEVEGKIVLCDRGGLVGRVEKGKVVKDAGGIGMILVNEESDGYSTLADAHVLPASHV 453
Query: 442 SYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGP 501
SY+ G IK YINSTSSP A VF+GTVIG K+ P ++SFSSRGPS ASPGILKPDIIGP
Sbjct: 454 SYSDGMRIKNYINSTSSPTAMFVFEGTVIGLKTAPMVSSFSSRGPSFASPGILKPDIIGP 513
Query: 502 GVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMT 561
GV+ILAAWP SVENKTNTK+TFNM++GTSMSCPHLSG+AALLKSAHPDWSPAAIKSAIMT
Sbjct: 514 GVSILAAWPISVENKTNTKATFNMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMT 573
Query: 562 TADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSANDPGLIYDIQPDDYIPYLCGLNYSD 621
TAD V+L G+PIVD+RLL AD+ A GAGHVNPS A+DPGL+YDIQPDDYIPYLCGL Y+D
Sbjct: 574 TADTVNLGGQPIVDERLLSADVLATGAGHVNPSKASDPGLVYDIQPDDYIPYLCGLGYTD 633
Query: 622 QHVQDIVMINVQCSKVSGIAETELNYPSFSVILGSTSQTYNRTVTNVGQAESSYTHKIVA 681
+ + IV V+CS+V I E +LNYPSFS++ G+ +Q Y RTVTNVG A SSYT +
Sbjct: 634 RDITYIVQYKVKCSEVGSIPEAQLNYPSFSIVFGAKTQIYTRTVTNVGPATSSYTVSVAP 693
Query: 682 PEGVTVTVEPENISFTKKNQKAIYSITFTRSQK-TSALFAQGYLSWVSTKHTVRSPIAVR 740
P GV VTV P I+FT+ Q A YS+TFT + K S QGYL W S +H+VRSPI+V
Sbjct: 694 PPGVDVTVTPSKIAFTQVKQTATYSVTFTNTGKGYSDPSVQGYLKWDSDQHSVRSPISVV 753
Query: 741 F 741
F
Sbjct: 754 F 754
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224071656|ref|XP_002303550.1| predicted protein [Populus trichocarpa] gi|222840982|gb|EEE78529.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 956 bits (2470), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/731 (65%), Positives = 568/731 (77%), Gaps = 19/731 (2%)
Query: 21 TSNGSDTDSLETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCYK 80
TS S ETYIV+V+KP++ + DLDSWY SFLPV+I SS N+Q RM+Y Y+
Sbjct: 38 TSETSQKGKFETYIVFVQKPEEGVSAD----DLDSWYKSFLPVTIPSS-NHQERMVYSYR 92
Query: 81 NVITGFAAKLTAEQAKAMETKEGFISAHVEKTLQLHTTHTPNFLGLHQNSGFWKDSNLGK 140
+V TGFAAKLTAE+AKAME K+GF+SA +K L LHTTH+PNFLGL +N GFW++S GK
Sbjct: 93 HVATGFAAKLTAEEAKAMEDKDGFLSAKPQKILSLHTTHSPNFLGLQKNLGFWRNSTYGK 152
Query: 141 GVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPP 200
GVIIGV+DTGI+P HPSFSDEG+PPPP KWKGKC F G CNNKLIGAR+F S PP
Sbjct: 153 GVIIGVLDTGISPDHPSFSDEGVPPPPTKWKGKCNFNGTVCNNKLIGARDFTS-SKAAPP 211
Query: 201 LDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAA 260
D+EGHGTHTA+TAAGNFVN A+VFG A+GTAVG+APLAHLAIYKVC GC++S + AA
Sbjct: 212 FDEEGHGTHTASTAAGNFVNDASVFGNANGTAVGMAPLAHLAIYKVCSDFGCADSDILAA 271
Query: 261 MDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEA 320
MD A++DGVDVLSLSLG S PFFED +A+G+F A QK IFVSCSAGNEGP + SNEA
Sbjct: 272 MDAAVEDGVDVLSLSLGGGSAPFFEDSIAVGAFGATQKGIFVSCSAGNEGPYNGSLSNEA 331
Query: 321 PWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCS 380
PWIL+VGAST DRSI A V LGN + GE+LFQ P L+Y GA+G+ S+A C+
Sbjct: 332 PWILTVGASTIDRSIRADVLLGNSNHFFGESLFQSNSPP--YMSLVYAGAHGSQSAAFCA 389
Query: 381 PGSLSS-NIRGKLVLCERGGG-ERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPA 438
P SL+ +++GK+VLCERGGG R KGQ VKDAGG MILMNDK +GYSTLAD H+LPA
Sbjct: 390 PESLTDIDVKGKIVLCERGGGIARIDKGQAVKDAGGAAMILMNDKDSGYSTLADAHVLPA 449
Query: 439 VHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDI 498
HVSY+AG SIKAYINST P ATI+F GT IG K+ P +ASFSSRGPS+ASPGILKPDI
Sbjct: 450 SHVSYSAGLSIKAYINSTQVPTATIMFLGTKIGDKTAPTVASFSSRGPSLASPGILKPDI 509
Query: 499 IGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSA 558
IGPGV+ILAAWP SVENKT+TKSTFN+++GTSMSCPHLSG+AALLKSAHPDWSPAAIKSA
Sbjct: 510 IGPGVSILAAWPVSVENKTDTKSTFNIISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSA 569
Query: 559 IMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSANDPGLIYDIQPDDYIPYLCGLN 618
IMTTAD+V+L +PI+D+RLLPAD+ A GAG VNPS A+DPGL+YDIQPDDYIPYLCGL
Sbjct: 570 IMTTADLVNLGNQPILDERLLPADILATGAGQVNPSKASDPGLVYDIQPDDYIPYLCGLG 629
Query: 619 YSDQHVQDIVMINVQCSKVSGIAETELNYPSFSVILGST--SQTYNRTVTNVGQAESSYT 676
Y D+ + IV V CS+ S I E +LNYPSFS++ G +QTY RTVTNVG SSYT
Sbjct: 630 YPDKDISYIVQRQVNCSEESSILEAQLNYPSFSIVYGPNPATQTYTRTVTNVGPPNSSYT 689
Query: 677 HKIVAPEGVTVTVEPENISFTKKNQKAIYSITFT-RSQKTSALFAQGYLSWVSTKHTVR- 734
+ P GV VTV P+NI FT Q A YS+TFT S+ + QGY+ WVS KH++R
Sbjct: 690 AFVDPPPGVNVTVTPKNIIFTNTEQTATYSVTFTATSESNNDPIGQGYIRWVSDKHSIRS 749
Query: 735 -----SPIAVR 740
SP+ +R
Sbjct: 750 QYWFLSPMKIR 760
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426710|ref|XP_002275471.1| PREDICTED: subtilisin-like protease SDD1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 949 bits (2454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/751 (62%), Positives = 583/751 (77%), Gaps = 20/751 (2%)
Query: 8 LIFSLTFSPAFALTSNGS------DTDSLETYIVYVRKPDQDQATTSIKLDLDSWYHSFL 61
++F L FSP A S S + L+TYIV+V++ +++TT+ + +L+SW+ SFL
Sbjct: 9 IVFILYFSPEIAQGSQFSSSIETTEKSMLQTYIVHVKQ--LERSTTAQQENLESWHRSFL 66
Query: 62 PVSISSSINNQPRMLYCYKNVITGFAAKLTAEQAKAMETKEGFISAHVEKTLQLHTTHTP 121
PV+ ++S +NQ R++Y YKNVI+GFAA+LT E+ +AME +GFISA EK L L TTH+P
Sbjct: 67 PVATATS-DNQERLVYSYKNVISGFAARLTEEEVRAMENMDGFISASPEKMLPLLTTHSP 125
Query: 122 NFLGLHQNSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAAC 181
+FLGLHQ GFWK+SN GKGVIIGV+D+G+ P HPSFS EG+PPPPAKWKG CEF + C
Sbjct: 126 DFLGLHQEMGFWKESNFGKGVIIGVLDSGVLPSHPSFSGEGIPPPPAKWKGSCEFMASEC 185
Query: 182 NNKLIGARNF------LQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGI 235
NNKLIGAR+F +G T EPPLDD+GHGTHTA+TAAG FV A+V G A GTAVG+
Sbjct: 186 NNKLIGARSFNVGAKATKGVTAEPPLDDDGHGTHTASTAAGAFVKNADVLGNAKGTAVGM 245
Query: 236 APLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSA 295
AP AHLAIYKVC C ES V A +D A++DGVDV+S+SLG +VPFF+D +A+GSF+A
Sbjct: 246 APYAHLAIYKVCFGPDCPESDVIAGLDAAVEDGVDVISISLGDPAVPFFQDNIAVGSFAA 305
Query: 296 IQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQP 355
+QK IFVSCSAGN GP +T SNEAPWIL+VGAS+ DR+I A+ +LGN +DGE LFQP
Sbjct: 306 MQKGIFVSCSAGNSGPFNTTLSNEAPWILTVGASSIDRTIKAAAKLGNGEQFDGETLFQP 365
Query: 356 KDFPSKQFPLIYPGANGNVSSAQCSPGSLSS-NIRGKLVLCERGGG-ERTKKGQVVKDAG 413
DFP+ Q PL+Y G NG SA C GSL + +++GK+VLC+RGGG R KG VK+AG
Sbjct: 366 SDFPATQLPLVYAGMNGKPESAVCGEGSLKNIDVKGKVVLCDRGGGIARIDKGTEVKNAG 425
Query: 414 GIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKK 473
G MIL+N + +G+STLAD H+LPA HVSYAAG IKAYINST++P A I+FKGTVIG
Sbjct: 426 GAAMILVNQESDGFSTLADAHVLPATHVSYAAGLKIKAYINSTATPTAAILFKGTVIGNP 485
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
+P + SFSSRGPS ASPGILKPDIIGPGV+ILAAWPF ++N N+KSTFN+++GTSMSC
Sbjct: 486 LSPAITSFSSRGPSFASPGILKPDIIGPGVSILAAWPFPLDNNINSKSTFNIISGTSMSC 545
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNP 593
PHLSG+AALLKS+HPDWSPAAIKSAIMTTAD++++ GKPIVD+RLLPAD+FA GAGHVNP
Sbjct: 546 PHLSGIAALLKSSHPDWSPAAIKSAIMTTADLLNVGGKPIVDERLLPADIFATGAGHVNP 605
Query: 594 SSANDPGLIYDIQPDDYIPYLCGLNYSDQHVQDIVMINVQCSKVSGIAETELNYPSFSVI 653
S ANDPGL+YDI+PDDYIPYLCGL Y+D V + +++CS+ S I E ELNYPSFSV
Sbjct: 606 SRANDPGLVYDIEPDDYIPYLCGLGYTDTEVGILAHRSIKCSEESSIPEGELNYPSFSVA 665
Query: 654 LGSTSQTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRSQ 713
LG QT+ RTVTNVG+A SSYT + P+GV V+V P+ + F+K NQK YS+TF+ +
Sbjct: 666 LGP-PQTFTRTVTNVGEAYSSYTVTAIVPQGVDVSVNPDKLYFSKVNQKLTYSVTFSHNS 724
Query: 714 KTSAL--FAQGYLSWVSTKHTVRSPIAVRFQ 742
+ FAQGYL WVS KH+V SPI++ F+
Sbjct: 725 SSGKSSKFAQGYLKWVSGKHSVGSPISIMFK 755
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224058637|ref|XP_002299578.1| predicted protein [Populus trichocarpa] gi|222846836|gb|EEE84383.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 933 bits (2412), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/696 (65%), Positives = 548/696 (78%), Gaps = 6/696 (0%)
Query: 50 KLDLDSWYHSFLPVSISSSINNQPRMLYCYKNVITGFAAKLTAEQAKAMETKEGFISAHV 109
+ +LDSWY SFLP ++++S +NQ R+++ Y NV+TGFAAKLT ++AKAME KEGF+SAH
Sbjct: 6 REELDSWYQSFLP-AVTTSSSNQQRLVHSYHNVVTGFAAKLTEKEAKAMEMKEGFVSAHP 64
Query: 110 EKTLQLHTTHTPNFLGLHQNSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAK 169
+K + TTHTPNFLGL QN GFW SN GKGVIIGV+DTGITP HPSFSDEGMPPPPAK
Sbjct: 65 QKVFHVKTTHTPNFLGLQQNLGFWNHSNYGKGVIIGVLDTGITPSHPSFSDEGMPPPPAK 124
Query: 170 WKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQAD 229
WKGKCEF G CNNKLIGARNF S G+PP+DD GHGTHTA+TAAG+ V GA+ + Q +
Sbjct: 125 WKGKCEFNGTLCNNKLIGARNF--DSAGKPPVDDNGHGTHTASTAAGSRVQGASFYDQLN 182
Query: 230 GTAVGIAPLAHLAIYKVCD-FDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPL 288
GTAVGIA AHLAIY+VC F C ES + A MDTA++DG DVLSLSLGA S+PF+ED +
Sbjct: 183 GTAVGIASSAHLAIYQVCSGFGSCEESNILAGMDTAVEDGADVLSLSLGAGSLPFYEDSI 242
Query: 289 AIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYD 348
AIG+F AIQK IFVSC+AGNEGP + SNEAPWIL+VGAST DRSI A+V LGN+A YD
Sbjct: 243 AIGAFGAIQKGIFVSCAAGNEGPFKGSLSNEAPWILTVGASTVDRSIRATVLLGNKASYD 302
Query: 349 GEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSS-NIRGKLVLCERGG-GERTKKG 406
G++ +QP +F S PLIY GANG+ ++A C PGSL +++GK+VLCE GG E KG
Sbjct: 303 GQSFYQPTNFSSTLLPLIYAGANGSDTAAFCDPGSLKDVDVKGKVVLCESGGFSESVDKG 362
Query: 407 QVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFK 466
Q VKDAGG MI+MND+L+G T AD H+LPA V+YA G SIKAYINSTSSP ATI+FK
Sbjct: 363 QEVKDAGGAAMIIMNDELSGNITTADFHVLPASDVTYADGLSIKAYINSTSSPMATILFK 422
Query: 467 GTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMV 526
GTV G P+LA FSSRGPS+ SPGILKPDIIGPGV+ILAAWP++V+N NTKSTFNM+
Sbjct: 423 GTVFGVPYAPQLADFSSRGPSLESPGILKPDIIGPGVDILAAWPYAVDNNRNTKSTFNMI 482
Query: 527 AGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAV 586
+GTSM+ PHLSG+AALLKS+HPDWSPAAIKSAIMTTA++ +L G PI D P D+FA+
Sbjct: 483 SGTSMATPHLSGIAALLKSSHPDWSPAAIKSAIMTTANLTNLGGTPITDDSFGPVDVFAI 542
Query: 587 GAGHVNPSSANDPGLIYDIQPDDYIPYLCGLNYSDQHVQDIVMINVQCSKVSGIAETELN 646
G+GHVNP+ A+DPGL+YDIQPDDYIPYLCGL Y++ V IV V CS S I E +LN
Sbjct: 543 GSGHVNPTKADDPGLVYDIQPDDYIPYLCGLGYNNTEVGIIVQRPVTCSNSSSIPEAQLN 602
Query: 647 YPSFSVILGSTSQTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYS 706
YPSFS+ LGS+ QTY RTVTNVG +SSY +I+AP+GV V V P I F + KA YS
Sbjct: 603 YPSFSIKLGSSPQTYTRTVTNVGPFKSSYIAEIIAPQGVDVKVTPNAIPFGGGDPKAAYS 662
Query: 707 ITFTRSQKTSALFAQGYLSWVSTKHTVRSPIAVRFQ 742
+TFTR+ + F+QGYL+WVS H VR+PIAV F+
Sbjct: 663 VTFTRTANVNLPFSQGYLNWVSADHVVRNPIAVTFE 698
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537205|ref|XP_002509669.1| Cucumisin precursor, putative [Ricinus communis] gi|223549568|gb|EEF51056.1| Cucumisin precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/737 (62%), Positives = 561/737 (76%), Gaps = 19/737 (2%)
Query: 21 TSNGSDTDSLETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSIN-NQPRMLYCY 79
T+ + +L+TYIV+V +P+ T S DL +W+ SFL S +SS Q RMLY Y
Sbjct: 35 TTETIEKKNLQTYIVHVNQPEGR--TFSQPEDLKNWHKSFLSFSTASSEEEQQQRMLYSY 92
Query: 80 KNVITGFAAKLTAEQAKAMETKEGFISAHVEKTLQLHTTHTPNFLGLHQNSGFWKDSNLG 139
+N+I+GF+A+LT E+ KAME GF+SA +E+ L+L TTHTP+FLGLHQ G WKDS+ G
Sbjct: 93 QNIISGFSARLTQEEVKAMEEITGFVSACLERKLRLQTTHTPSFLGLHQQMGLWKDSDFG 152
Query: 140 KGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNF------LQ 193
KGVIIG++D G+ P HPSFSDEGMP PPAKWKG+CEF + CNNKLIGAR F ++
Sbjct: 153 KGVIIGILDGGVYPSHPSFSDEGMPLPPAKWKGRCEFNASECNNKLIGARTFNLAAKTMK 212
Query: 194 GSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVC---DFD 250
G+ EPP+D +GHGTHTA+TAAG FV ++V G A GTAVG+AP AHLAIYKVC D
Sbjct: 213 GAPTEPPIDVDGHGTHTASTAAGGFVYNSDVLGNAKGTAVGMAPFAHLAIYKVCFGDPND 272
Query: 251 GCSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEG 310
C ES V A +D A+DDGVDVLSLSLG S+PFF+D +AIGSF+AIQK IFVSCSAGN G
Sbjct: 273 DCPESDVLAGLDAAVDDGVDVLSLSLGDVSMPFFQDNIAIGSFAAIQKGIFVSCSAGNSG 332
Query: 311 PNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGA 370
P+ ST SNEAPWIL+VGAST DR IVA +LGN DGE++ QP +FP+ P++Y G
Sbjct: 333 PSKSTLSNEAPWILTVGASTIDRRIVAIAKLGNGEELDGESVSQPSNFPTTLLPIVYAGM 392
Query: 371 NGNVSSAQCSPGSLSS-NIRGKLVLCERGGG-ERTKKGQVVKDAGGIGMILMNDKLNGYS 428
N SA C G+L N++ K+V+CERGGG R KG VK+AGG MIL+ND+ NG+S
Sbjct: 393 NSKPDSAFCGEGALEGMNVKDKVVMCERGGGIGRIAKGDEVKNAGGAAMILVNDETNGFS 452
Query: 429 TLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSI 488
T+AD H+LPA HVS+AAG IKAYINST +P ATI+FKGTVIG S+P + SFSSRGPS+
Sbjct: 453 TIADAHVLPATHVSFAAGLKIKAYINSTKTPMATILFKGTVIGDSSSPAVTSFSSRGPSL 512
Query: 489 ASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHP 548
ASPGILKPDIIGPGV+ILAAWPF ++N TNTK TFN+++GTSMSCPHLSG+AALLKS+HP
Sbjct: 513 ASPGILKPDIIGPGVSILAAWPFPLDNNTNTKLTFNIMSGTSMSCPHLSGIAALLKSSHP 572
Query: 549 DWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSANDPGLIYDIQPD 608
WSPAAIKSAI+TTADI++++GKPIVD+ PAD FA GAGHVNPS ANDPGL+YDIQPD
Sbjct: 573 YWSPAAIKSAIVTTADILNMEGKPIVDETHQPADFFATGAGHVNPSRANDPGLVYDIQPD 632
Query: 609 DYIPYLCGLNYSDQHVQDIVMINVQCSKVSGIAETELNYPSFSVILGSTSQTYNRTVTNV 668
DYIPYLCGLNY+D+ V I + CS + IAE +LNYPSFSV LG QT+ RTVTNV
Sbjct: 633 DYIPYLCGLNYTDEQVSIIAHRPISCSTIQTIAEGQLNYPSFSVTLGP-PQTFIRTVTNV 691
Query: 669 GQAESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRS---QKTSALFAQGYLS 725
G A S + I +P GV V+V+P + F+K NQKA YSITF+ + KTS F QGY++
Sbjct: 692 GYANSVFAATITSPPGVAVSVKPSRLYFSKLNQKATYSITFSHTGYGAKTSE-FGQGYIT 750
Query: 726 WVSTKHTVRSPIAVRFQ 742
WVS K+ V SPI+VRF+
Sbjct: 751 WVSDKYFVGSPISVRFK 767
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426704|ref|XP_002275410.1| PREDICTED: subtilisin-like protease SDD1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 911 bits (2354), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/733 (61%), Positives = 549/733 (74%), Gaps = 7/733 (0%)
Query: 14 FSPAFALTSNGSDTDSLETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQP 73
S + A ++ L+TYIV+V P + S L+ SWY SFLP S S N Q
Sbjct: 15 ISGSVAFQQIAAEKSMLKTYIVHVNDPVGKFSAQSEALE--SWYQSFLPASTESE-NQQQ 71
Query: 74 RMLYCYKNVITGFAAKLTAEQAKAMETKEGFISAHVEKTLQLHTTHTPNFLGLHQNSGFW 133
R+LY Y++VI+GFAA+LT E+ KAME K+GF+SA EK LHTT TP FLGLH SGFW
Sbjct: 72 RLLYSYRHVISGFAARLTEEEVKAMEKKDGFVSATPEKIYHLHTTRTPGFLGLHNRSGFW 131
Query: 134 KDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQ 193
K SN G+GVIIG++DTG+ P HPSFSDEGMP PPAKW G CEF G ACNNKLIGARNF
Sbjct: 132 KGSNFGEGVIIGILDTGVYPQHPSFSDEGMPLPPAKWTGTCEFNGTACNNKLIGARNFDS 191
Query: 194 GSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCS 253
+ + P+D+EGHGTHTA+TAAGN+V AN++G A GTA GIAP AH+A+YKVC GC
Sbjct: 192 LTPKQLPIDEEGHGTHTASTAAGNYVKHANMYGNAKGTAAGIAPRAHVAVYKVCGLLGCG 251
Query: 254 ESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNP 313
S + AA D AI+DGVDVLSLSLG S PF++DP+A+G+F+AI+K IFVSCSAGN GP
Sbjct: 252 GSDILAAYDAAIEDGVDVLSLSLGGESSPFYDDPVALGAFAAIRKGIFVSCSAGNSGPAH 311
Query: 314 STSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGN 373
T SNEAPWIL+V AST DRSI A+ +LGN +DGE+L+QP++F SK PL+Y GANGN
Sbjct: 312 FTLSNEAPWILTVAASTLDRSITATAKLGNTEEFDGESLYQPRNFSSKLLPLVYAGANGN 371
Query: 374 VSSAQCSPGSLSS-NIRGKLVLCERGGG-ERTKKGQVVKDAGGIGMILMNDKLNGYSTLA 431
+SA C+PGSL + +++GK+V+C+RGG RT+KG VK+AGG MIL N + +ST A
Sbjct: 372 QTSAYCAPGSLKNLDVKGKVVVCDRGGDIGRTEKGVEVKNAGGAAMILANSINDSFSTFA 431
Query: 432 DPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASP 491
DPH+LPA HVSYAAG IKAY STS+P+ATI+FKGT +G S P++ SFSSRGPSIASP
Sbjct: 432 DPHVLPATHVSYAAGLKIKAYTKSTSNPSATILFKGTNVGVTSAPQITSFSSRGPSIASP 491
Query: 492 GILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWS 551
GILKPDI GPGV+ILAAWP + N T +KSTFNM++GTSMSCPHLSGVAALLKSAHP+WS
Sbjct: 492 GILKPDITGPGVSILAAWPAPLLNVTGSKSTFNMISGTSMSCPHLSGVAALLKSAHPNWS 551
Query: 552 PAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSANDPGLIYDIQPDDYI 611
PAAIKSAI+TTAD ++L +PI+D + +PAD+FA+GAGHVNPS ANDPGLIYDI+P DYI
Sbjct: 552 PAAIKSAILTTADTLNLKDEPILDDKHMPADLFAIGAGHVNPSKANDPGLIYDIEPYDYI 611
Query: 612 PYLCGLNYSDQHVQDIVMINVQCSKVSGIAETELNYPSFSVILGSTSQTYNRTVTNVGQA 671
PYLCGL Y++ V+ IV+ V CSK S I E ELNYPSFS+ LGS + R VTNVG+
Sbjct: 612 PYLCGLGYTNAQVEAIVLRKVNCSKESSIPEAELNYPSFSIALGSKDLKFKRVVTNVGKP 671
Query: 672 ESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTR--SQKTSALFAQGYLSWVST 729
SSY I APEGV V V+P I F K QK Y++ F + +AQG+L WVS
Sbjct: 672 HSSYAVSINAPEGVDVVVKPTKIHFNKVYQKKSYTVIFRSIGGVDSRNRYAQGFLKWVSA 731
Query: 730 KHTVRSPIAVRFQ 742
H+ +SPI+V F+
Sbjct: 732 THSAKSPISVTFE 744
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537183|ref|XP_002509658.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223549557|gb|EEF51045.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/721 (63%), Positives = 550/721 (76%), Gaps = 15/721 (2%)
Query: 26 DTDSLETYIVYVRKPDQDQATTSIKL-DLDSWYHSFLPVSISSSINNQPRMLYCYKNVIT 84
+ +LETYI+ + KP Q ++ DL WY SFLP + SS Q R+++ Y++V+T
Sbjct: 29 EETNLETYIILLEKP---QGADFMEFNDLHGWYLSFLPANTFSS--EQSRLVHSYRHVVT 83
Query: 85 GFAAKLTAEQAKAMETKEGFISAHVEKTLQLHTTHTPNFLGLHQNSGFWKDSNLGKGVII 144
GFAAKLTAE+AKAME +EGF+ A ++ + LHTTHTP+FLGL QN GFWK SN GKGVII
Sbjct: 84 GFAAKLTAEEAKAMEMREGFVLARPQRMVPLHTTHTPSFLGLQQNLGFWKHSNFGKGVII 143
Query: 145 GVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGA-ACNNKLIGARNFLQGSTGEPPLDD 203
GV+D+GITP HPSFS EGMPPPPAKW GKCE KG +CNNKLIGARNF S D
Sbjct: 144 GVVDSGITPDHPSFSGEGMPPPPAKWTGKCELKGTLSCNNKLIGARNFATNSNDL--FDK 201
Query: 204 EGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVC-DFDGCSESRVYAAMD 262
HGTHTA+TAAG+ V GA+ FGQA+GTA+G+APLAHLA+YKV ES + AAMD
Sbjct: 202 VAHGTHTASTAAGSPVQGASYFGQANGTAIGMAPLAHLAMYKVSGRARKAGESEILAAMD 261
Query: 263 TAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPW 322
AI++GVD+LSLSLG + PF++D +A+G+++AIQK IFVSCSAGN GP + SNEAPW
Sbjct: 262 AAIEEGVDILSLSLGIGTHPFYDDVIALGAYAAIQKRIFVSCSAGNSGPYSCSLSNEAPW 321
Query: 323 ILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPG 382
IL+VGAST DR+I A+V LGN+ +GE+LFQPKDFPS PL+Y GANGN SSA C G
Sbjct: 322 ILTVGASTVDRAIRATVLLGNKVELNGESLFQPKDFPSTLLPLVYAGANGNASSASCDHG 381
Query: 383 SLSS-NIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHV 441
SL + +++GK+VLCE GG E KGQ VKD GG MI+MND L G+ T H+LPA HV
Sbjct: 382 SLKNVDVKGKIVLCE-GGIETISKGQEVKDNGGAAMIVMNDDLEGFITAPRLHVLPASHV 440
Query: 442 SYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGP 501
SY AG SIKAYINS SSP ATI+FKGTV+G P++A FSSRGPS ASPGILKPDIIGP
Sbjct: 441 SYEAGSSIKAYINSASSPKATILFKGTVVGLSDAPQVAYFSSRGPSCASPGILKPDIIGP 500
Query: 502 GVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMT 561
GV ILAAWP SV+N +N FNM++GTSMSCPHL+G+AALLKSAHPDWSPAAIKSAIMT
Sbjct: 501 GVRILAAWPVSVDNTSNR---FNMISGTSMSCPHLTGIAALLKSAHPDWSPAAIKSAIMT 557
Query: 562 TADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSANDPGLIYDIQPDDYIPYLCGLNYSD 621
TA + +L GKPI DQ +PA +F +GAGHVNPS ANDPGL+YDIQPDDYIPYLCGL YSD
Sbjct: 558 TASLDNLGGKPISDQDYVPATVFDMGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSD 617
Query: 622 QHVQDIVMINVQCSKVSGIAETELNYPSFSVILGSTSQTYNRTVTNVGQAESSYTHKIVA 681
+HV+ IV V+C+ V+ I E +LNYPSFS+ LGS+ QTY RTVTN GQ S+Y +I A
Sbjct: 618 KHVRVIVQRKVKCTNVATIPEAQLNYPSFSIKLGSSPQTYTRTVTNFGQPNSAYYLEIFA 677
Query: 682 PEGVTVTVEPENISFTKKNQKAIYSITFTRSQKTSALFAQGYLSWVSTKHTVRSPIAVRF 741
P+GV V V P+ I+F NQKA YS TF+++ + LFAQGYL WV+ ++V SPIAV F
Sbjct: 678 PKGVDVMVTPQKITFNGVNQKATYSATFSKNGNANGLFAQGYLKWVAEGYSVGSPIAVIF 737
Query: 742 Q 742
+
Sbjct: 738 E 738
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224071660|ref|XP_002303551.1| predicted protein [Populus trichocarpa] gi|222840983|gb|EEE78530.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 904 bits (2336), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/705 (64%), Positives = 540/705 (76%), Gaps = 16/705 (2%)
Query: 52 DLDSWYHSFLPVSISSSINNQPRMLYCYKNVITGFAAKLTAEQAKAMETKEGFISAHVEK 111
DL+SWY SFLPVS +SS Q RMLY Y+NV++GFAA+LT E+ K+ME K+GF+SA E+
Sbjct: 6 DLESWYQSFLPVSTASS-EKQQRMLYAYQNVMSGFAARLTQEEVKSMEEKDGFLSARPER 64
Query: 112 TLQLHTTHTPNFLGLHQNSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWK 171
L L TTHTP FLGLHQ GFWK+SN GKGVIIGV+D GI P HPSFSDEGMPPPPAKWK
Sbjct: 65 ILHLQTTHTPRFLGLHQELGFWKESNFGKGVIIGVLDGGIFPSHPSFSDEGMPPPPAKWK 124
Query: 172 GKCEFKGAACNNKLIGARNF-------LQGSTGEPPLDDEGHGTHTATTAAGNFVNGANV 224
G+C+F + CNNKLIGAR+F + EPP+D +GHGTHTA+TAAG FV A V
Sbjct: 125 GRCDFNASDCNNKLIGARSFNIAAKAKKGSAATEPPIDVDGHGTHTASTAAGAFVKDAEV 184
Query: 225 FGQADGTAVGIAPLAHLAIYKVC---DFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASV 281
G A GTAVGIAP AHLAIYKVC D C ES + A +D A+ DGVDVLSLSLG SV
Sbjct: 185 LGNARGTAVGIAPHAHLAIYKVCFGDPGDDCPESDILAGLDAAVQDGVDVLSLSLGEDSV 244
Query: 282 PFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVEL 341
P F D +AIGSF+AIQK IFVSCSAGN GP T SNEAPWIL+VGAST DR A+ L
Sbjct: 245 PLFNDTIAIGSFAAIQKGIFVSCSAGNSGPFNGTLSNEAPWILTVGASTVDRRFSATARL 304
Query: 342 GNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSS-NIRGKLVLCERGGG 400
GN DGE+L Q +FPS PL+Y G +G +S+ C G+L +++GK+VLCERGGG
Sbjct: 305 GNGEQIDGESLSQHSNFPSTLLPLVYAGMSGKPNSSLCGEGALEGMDVKGKIVLCERGGG 364
Query: 401 -ERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSP 459
R KG VK+AGG MILMN++++G+ST AD H+LPA HVS+AAG IKAYINST +P
Sbjct: 365 IGRIAKGGEVKNAGGAAMILMNEEVDGFSTNADVHVLPATHVSFAAGLKIKAYINSTQAP 424
Query: 460 NATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNT 519
ATI+FKGTVIG S+P +ASFSSRGPS+ASPGILKPDIIGPGV+ILAAWPF ++N T++
Sbjct: 425 MATILFKGTVIGDPSSPFVASFSSRGPSLASPGILKPDIIGPGVSILAAWPFPLDNNTSS 484
Query: 520 KSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLL 579
KSTFN+++GTSMSCPHLSG+AALLKS+HP WSPAAIKSAIMTTAD ++++GK IVDQ L
Sbjct: 485 KSTFNIISGTSMSCPHLSGIAALLKSSHPYWSPAAIKSAIMTTADTLNMEGKLIVDQTLQ 544
Query: 580 PADMFAVGAGHVNPSSANDPGLIYDIQPDDYIPYLCGLNYSDQHVQDIVMINVQCSKVSG 639
PAD+FA GAGHVNPS AN+PGL+YDIQPDDYIPYLCGL Y+D V IV V+CS+
Sbjct: 545 PADIFATGAGHVNPSRANNPGLVYDIQPDDYIPYLCGLGYADNEVSIIVHEQVKCSEKPS 604
Query: 640 IAETELNYPSFSVILGSTSQTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKK 699
I E ELNYPSF+V LG SQT+ RTVTNVG S+Y IV+P GV VTV+P + F+K
Sbjct: 605 IPEGELNYPSFAVTLGP-SQTFTRTVTNVGDVNSAYEVAIVSPPGVDVTVKPSKLYFSKV 663
Query: 700 NQKAIYSITFTRSQKTSAL--FAQGYLSWVSTKHTVRSPIAVRFQ 742
NQKA YS+ F+R++ + AQGY+ W S K+TVRSPIAV +
Sbjct: 664 NQKATYSVAFSRTEYGGKISETAQGYIVWASAKYTVRSPIAVSLK 708
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 742 | ||||||
| UNIPROTKB|Q8H047 | 754 | OJ1263H11.8 "Subtilisin N-term | 0.981 | 0.965 | 0.482 | 2.6e-182 | |
| UNIPROTKB|Q8RVC2 | 759 | OSJNBb0005J14.3 "Putative seri | 0.951 | 0.930 | 0.500 | 6.8e-182 | |
| UNIPROTKB|Q7XPR8 | 760 | OSJNBa0065O17.13 "Os04g0559000 | 0.966 | 0.943 | 0.476 | 4.5e-169 | |
| UNIPROTKB|Q6ESH8 | 791 | P0461B08.17 "Subtilisin-like s | 0.898 | 0.843 | 0.465 | 1.5e-163 | |
| TAIR|locus:2020245 | 775 | SDD1 "AT1G04110" [Arabidopsis | 0.757 | 0.725 | 0.448 | 8.8e-158 | |
| UNIPROTKB|Q0D3H9 | 781 | Os07g0685900 "cDNA clone:001-1 | 0.935 | 0.888 | 0.452 | 4.3e-157 | |
| UNIPROTKB|Q7XPR9 | 793 | OSJNBa0065O17.12 "Os04g0558900 | 0.888 | 0.831 | 0.460 | 1.1e-156 | |
| UNIPROTKB|Q94H95 | 764 | OSJNBb0048A17.11 "cDNA clone:J | 0.940 | 0.913 | 0.448 | 4.9e-156 | |
| TAIR|locus:2158187 | 757 | ARA12 [Arabidopsis thaliana (t | 0.966 | 0.947 | 0.434 | 5.6e-155 | |
| TAIR|locus:2165366 | 780 | SBT1.3 "AT5G51750" [Arabidopsi | 0.814 | 0.774 | 0.431 | 1.7e-154 |
| UNIPROTKB|Q8H047 OJ1263H11.8 "Subtilisin N-terminal Region family protein, expressed" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1769 (627.8 bits), Expect = 2.6e-182, P = 2.6e-182
Identities = 362/750 (48%), Positives = 479/750 (63%)
Query: 4 ITIGLIFSLTFSPAF-ALTSNGSDTDSLETYIVYVRKPDQDQATTSIKLDLDSWYHSFLP 62
I + ++ S+ S A A+ S + + Y+V++ + S++L W+ SFLP
Sbjct: 6 ILLAVVVSMVVSSAMLAVVSCARER---KNYVVHLDPREDGGVADSVEL----WHRSFLP 58
Query: 63 VSISSSINNQ-PRMLYCYKNVITGFAAKLTAEQAKAMETKEGFISAHVEKTLQLHTTHTP 121
+ + + PR++Y Y +V++GFAA+LT ++A+AM KEG I + E+ L L TTH+P
Sbjct: 59 EATPEAAGDDGPRIIYSYSHVLSGFAAQLTDDEAEAMRKKEGCIRLYPEEFLPLATTHSP 118
Query: 122 NFLGLHQ-NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFK--- 177
FLGLH N GFW S G+GV+IG++DTGI P HPSF D GMPPPP KWKG CEFK
Sbjct: 119 GFLGLHLGNDGFWSRSGFGRGVVIGLLDTGILPSHPSFGDAGMPPPPKKWKGTCEFKAIS 178
Query: 178 GAACNNKLIGARNFLQGSTGE--PPLDDEXXXXXXXXXXXXNFVNGANVFGQADGTAVGI 235
G CNNK+IGAR F + PP+DD NFV A+V G A GTA G+
Sbjct: 179 GGGCNNKIIGARAFGSAAVNATAPPVDDAGHGTHTASTAAGNFVENADVRGNAHGTASGM 238
Query: 236 APLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAA-SVPFFEDPLAIGSFS 294
AP AHLAIYKVC CS + A +D A+ DGVDVLS S+GA+ PF D +AI +F
Sbjct: 239 APHAHLAIYKVCTRSRCSIMDIIAGLDAAVKDGVDVLSFSIGASPGAPFNYDLVAIATFK 298
Query: 295 AIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQ 354
A++ IFVS +AGN+GP +T N APW+L+V A T DR+I +V LGN V+DGE+L+Q
Sbjct: 299 AMEHGIFVSSAAGNDGPVAATVGNGAPWMLTVAAGTMDRAIRTTVTLGNGQVFDGESLYQ 358
Query: 355 PKDFPS-KQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCE-RGGGERTKKGQVVKDA 412
P++ + +Q PL++PG NG+ S CS + + GK+VLCE R E ++GQ V
Sbjct: 359 PRNNTAGRQLPLVFPGLNGDSDSRDCST-LVEEEVSGKVVLCESRSIVEHVEQGQTVSAY 417
Query: 413 GGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGK 472
GG GMILMN + GY+T AD H+LPA HVSYAAG I +YI ST P A++ FKGTV+G
Sbjct: 418 GGAGMILMNKPVEGYTTFADAHVLPASHVSYAAGSKILSYIKSTPKPTASVTFKGTVMGS 477
Query: 473 KSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAW-P--FSVENKTNTKSTFNMVAGT 529
P +A FSSRGP+ ASPG+LKPDI GPG+NILAAW P E +F M +GT
Sbjct: 478 SPAPSVAFFSSRGPNKASPGVLKPDITGPGMNILAAWAPGEMHTEFADGVSLSFFMESGT 537
Query: 530 SMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAG 589
SMS PHLSG+AA++KS HP WSPAAIKSAIMT++D+ DG PI D++ A + +GAG
Sbjct: 538 SMSTPHLSGIAAIIKSLHPTWSPAAIKSAIMTSSDVADHDGVPIKDEQYRSASFYTMGAG 597
Query: 590 HVNPSSANDPGLIYDIQPDDYIPYLCGLNYSDQHVQDIVMINVQCSKVSGIAETELNYPS 649
+VNPS A DPGL+YD+ +DYI YLCGL D V++I V C+K+ I E ELNYPS
Sbjct: 598 YVNPSRAVDPGLVYDLHTNDYIAYLCGLGIGDDGVKEITHRRVSCAKLKAITEAELNYPS 657
Query: 650 FSVILGSTSQTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITF 709
V L S T +R VTNVG+A S YT + P+ V VTV P + F++ +K +++T
Sbjct: 658 LVVKLLSQPITVHRIVTNVGKANSVYTAVVDMPKNVAVTVHPPLLRFSRAYEKQSFTVTV 717
Query: 710 TRSQKTSALFAQGYLSWVSTKHTVRSPIAV 739
+ + + +G L WVS +H VRSPI +
Sbjct: 718 RWAGQPAVAGVEGNLKWVSDEHVVRSPIVI 747
|
|
| UNIPROTKB|Q8RVC2 OSJNBb0005J14.3 "Putative serine protease" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1765 (626.4 bits), Expect = 6.8e-182, P = 6.8e-182
Identities = 364/727 (50%), Positives = 467/727 (64%)
Query: 31 ETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPV-----SISSSINNQPRMLYCYKNVITG 85
+ YIV++ +P + A + ++ W+ SFLP S S + PR++Y Y +V TG
Sbjct: 31 KNYIVHL-EPRDEAAAAAGDASVEEWHRSFLPQVAKLDSDSDGADGGPRIVYSYSDVFTG 89
Query: 86 FAAKLTAEQAKAMETKEGFISAHVEKTLQLHTTHTPNFLGLHQ-NSGFWKDSNLGKGVII 144
FAA+LT E+A+A+ G + + E+ L L TT +P FLGLH N FW S G+GV+I
Sbjct: 90 FAARLTDEEAEAVRATAGCLRLYPEEFLPLATTRSPGFLGLHLGNEAFWSHSGFGRGVVI 149
Query: 145 GVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFK---GAACNNKLIGARNFLQGSTGE--P 199
G++DTGI P HPSF D+G+ PPP WKG CEFK G CNNK+IGAR F + P
Sbjct: 150 GILDTGILPSHPSFGDDGLQPPPKNWKGTCEFKAIAGGGCNNKIIGARAFGSAAVNSSAP 209
Query: 200 PLDDEXXXXXXXXXXXXNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYA 259
P+DD NFV ANV G ADGTA G+AP AHLAIYKVC CS + A
Sbjct: 210 PVDDAGHGTHTASTAAGNFVENANVRGNADGTASGMAPHAHLAIYKVCTRSRCSIMDIIA 269
Query: 260 AMDTAIDDGVDVLSLSLGAAS-VPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSN 318
+D A+ DGVDVLS S+GA+S F DP+AI F A+++ I VSC+AGN GP+P T N
Sbjct: 270 GLDAAVKDGVDVLSFSIGASSGTQFNYDPIAIAGFKAMERGIVVSCAAGNSGPDPGTVGN 329
Query: 319 EAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQP-KDFPSKQFPLIYPGANGNVSSA 377
APW+L+V A T DR+I +V LGN +DGE+LFQP + + PL+YPGA+G+ +S
Sbjct: 330 GAPWMLTVAAGTMDRAIRTTVRLGNGDEFDGESLFQPGNNSAANPLPLVYPGADGSDTSR 389
Query: 378 QCSPGSLSSNIRGKLVLCE-RGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLL 436
CS + + GK+VLCE RG R + GQ V GG G+I+MN GY+T AD H+L
Sbjct: 390 DCSV-LRDAEVTGKVVLCESRGLNGRIEAGQTVAAYGGAGIIVMNRAAEGYTTFADAHVL 448
Query: 437 PAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKP 496
PA HVS+ AG I AY+NST +P A+I FKGTVIG +P + FSSRGPS ASPGILKP
Sbjct: 449 PASHVSFDAGTKIAAYVNSTDNPTASIAFKGTVIGSSPSPAVTFFSSRGPSKASPGILKP 508
Query: 497 DIIGPGVNILAAWPFSVENKTNTKS----TFNMVAGTSMSCPHLSGVAALLKSAHPDWSP 552
DI GPG+NILAAW S E+ T +F + +GTSMS PHLSG+AALLKS HPDWSP
Sbjct: 509 DITGPGMNILAAWAPS-ESHTEFSDGVGLSFFVESGTSMSTPHLSGIAALLKSLHPDWSP 567
Query: 553 AAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSANDPGLIYDIQPDDYIP 612
AAIKSAIMTT+D V G PI D++ A +A+GAG+VNP+ A DPGL+YD+ DDYIP
Sbjct: 568 AAIKSAIMTTSDAVDRTGVPIKDEQYRHATFYAMGAGYVNPALAFDPGLVYDLHADDYIP 627
Query: 613 YLCGLNYSDQHVQDIVMINVQCSKVSGIAETELNYPSFSVILGSTSQTYNRTVTNVGQAE 672
YLCGL D V++I V CS V I E ELNYPS V L + T NRTVTNVG+
Sbjct: 628 YLCGLGIGDDGVKEIAHRPVTCSDVKTITEAELNYPSLVVNLLAQPITVNRTVTNVGKPS 687
Query: 673 SSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRSQKTSALFAQGYLSWVSTKHT 732
S YT + P+ V+V V+P + FT+ + +++T + + + A+G L WVS +H
Sbjct: 688 SVYTAVVDMPKDVSVIVQPPMLRFTELKEMQSFTVTVRWAGQPNVAGAEGNLKWVSDEHI 747
Query: 733 VRSPIAV 739
VRSPI +
Sbjct: 748 VRSPIII 754
|
|
| UNIPROTKB|Q7XPR8 OSJNBa0065O17.13 "Os04g0559000 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1644 (583.8 bits), Expect = 4.5e-169, P = 4.5e-169
Identities = 364/764 (47%), Positives = 465/764 (60%)
Query: 12 LTFSP-AFALTSNGSDT-DSLETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVS----- 64
L+F P F L T D + T+IV+V+ + A T+ D WY +FLP
Sbjct: 9 LSFLPFVFVLAIAVEATGDEIGTFIVHVQPQESHVAATAD--DRKEWYKTFLPEDGRLVH 66
Query: 65 ----ISSSINNQ-PRMLYCYKNVITGFAAKLTAEQAKAMETKEGFISAHVEKTLQLHTTH 119
++S + R + + GF + + +Q ++T H + L L
Sbjct: 67 AYHHVASGFAARLTRQELDAVSAMPGFVSAVP-DQTHTLQT------THTPQFLGLSAPP 119
Query: 120 TPNFLGLHQNSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGA 179
P G +S S G GVI+GV+DTG+ P HPSFSD GMPPPPAKWKG C+F G
Sbjct: 120 PPQ--GKRWSSSSHGGSGAGAGVIVGVIDTGVFPDHPSFSDAGMPPPPAKWKGHCDFNGG 177
Query: 180 A-CNNKLIGARNFLQGST------GE--PPLDDEXXXXXXXXXXXXNFVNGANVFGQADG 230
+ CNNKLIGAR F+ +T GE PP+DD V GA+V GQ G
Sbjct: 178 SVCNNKLIGARTFIANATNSSSSYGERLPPVDDVGHGTHTASTAAGAAVPGAHVLGQGLG 237
Query: 231 TAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAI 290
A GIAP AH+A+YKVC + C+ S + A +D AI DG DV+S+S+G SVPF E+P+A+
Sbjct: 238 VAAGIAPHAHVAVYKVCPNESCAISDILAGVDAAIADGCDVISISIGGPSVPFHENPVAV 297
Query: 291 GSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGE 350
G+F A++K +FVS +AGN GPN S+ N+APW+L+V AST DRSI +V LGN +DGE
Sbjct: 298 GTFGAMEKGVFVSMAAGNAGPNVSSVINDAPWMLTVAASTMDRSIRTTVRLGNGLYFDGE 357
Query: 351 ALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSS-NIRGKLVLCERGGGE---RTKKG 406
+L+QP D PS +PL+Y GA+G S+ C GSL ++RGK+V+CE GGG R KG
Sbjct: 358 SLYQPNDSPSTFYPLVYAGASGKPSAEFCGNGSLDGFDVRGKIVVCEFGGGPNITRIIKG 417
Query: 407 QVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFK 466
VV+ AGG GMIL N GY+TLA+ H+LPA HV Y AG +IKAYINST++P A I+ +
Sbjct: 418 AVVQSAGGAGMILPNHFPEGYTTLAEAHVLPASHVDYVAGLAIKAYINSTANPVAQILPR 477
Query: 467 GTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSV---ENKTNTKSTF 523
GTV+G P +A FSSRGPS+ +PGILKPDI GPGVN+LAAWPF V + TF
Sbjct: 478 GTVLGTTPAPAMAFFSSRGPSVQNPGILKPDITGPGVNVLAAWPFQVGPSSAQVFPGPTF 537
Query: 524 NMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADM 583
N+++GTSMS PHLSGVAA +KS HP WSPAAIKSAIMTTADI G I+D++ PA+
Sbjct: 538 NIISGTSMSTPHLSGVAAFIKSRHPHWSPAAIKSAIMTTADITDRSGNQILDEQRAPANF 597
Query: 584 FAVGAGHVNPSSANDPGLIYDIQPDDYIPYLCGLNYSDQHVQDIVMINVQCSKVSGIAET 643
FA GAGHVNP A DPGL+YDI P DY+ YLCGL Y+ Q V I V CS V+ I E
Sbjct: 598 FATGAGHVNPERAADPGLVYDIAPCDYVGYLCGL-YTSQEVSVIARRPVNCSAVAAIPEH 656
Query: 644 ELNYPSFSVIL-----GSTSQTYNRTVTNVGQAESSYTHKI-VAPEGVTVTVEPENISFT 697
+LNYPS SV S RT NVG+ S Y + + VTV V P + FT
Sbjct: 657 QLNYPSISVRFPRAWNSSEPVLVRRTAKNVGEVPSEYYAAVDMLDTTVTVRVFPRTLRFT 716
Query: 698 KKNQKAIYSITFTRSQKTSALFAQGYLSWVSTKHTVRSPIAVRF 741
NQ+ +++ Q A QG + WVS HTVRSP++V F
Sbjct: 717 GVNQEKDFTVVVWPGQG-GARVVQGAVRWVSETHTVRSPVSVTF 759
|
|
| UNIPROTKB|Q6ESH8 P0461B08.17 "Subtilisin-like serine protease" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1592 (565.5 bits), Expect = 1.5e-163, P = 1.5e-163
Identities = 325/698 (46%), Positives = 441/698 (63%)
Query: 72 QPRMLYCYKNVITGFAAKLTAEQAKAMETKEGFISAHVEKTLQLHTTHTPNFLGLH---- 127
+ R++Y Y+NV+ GF A++T E+ M K+ F+ A EKT +L TT+TP +GL
Sbjct: 83 ETRLIYSYRNVVNGFCARVTREEVYEMAKKDWFVKAIPEKTYKLMTTYTPKMVGLTGAPA 142
Query: 128 -QNSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLI 186
+ G W SN+G+G+IIGV+D GI GHPSF GM PPPA+WKG+C+F + CNNKLI
Sbjct: 143 AYHGGLWNRSNMGEGMIIGVLDDGIAAGHPSFDAAGMGPPPARWKGRCDFNSSVCNNKLI 202
Query: 187 GARNFLQGS------TGEP--PLDDEXXXXXXXXXXXXNFVNGANVFGQADGTAVGIAPL 238
GAR+F + + +P P+ + NFV GANV G GTA G+AP
Sbjct: 203 GARSFFESAKWKWRGVDDPVLPVYELAHGTHTSSTAGGNFVPGANVMGNGFGTAAGMAPR 262
Query: 239 AHLAIYKVCDFD-GCSESRVYAAMDTAIDDGVDVLSLSLGAASV-PFFEDPLAIGSFSAI 296
AHLA+Y+VC D GC + AAMD A+D+GVDVLS+SLG F DP+A+G+++AI
Sbjct: 263 AHLALYQVCSEDRGCDRDDILAAMDDAVDEGVDVLSISLGDDEAGDFAGDPVALGAYTAI 322
Query: 297 QKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPK 356
+ +FVS SAGN GPNP T SNEAPW+L+V ASTT R VA+V+LG +DGEAL+QP
Sbjct: 323 MRGVFVSSSAGNNGPNPLTVSNEAPWLLTVAASTTGRKFVATVKLGTGVEFDGEALYQPP 382
Query: 357 DFPSKQFPLIYPGANGNVSSAQCSPGSL-SSNIRGKLVLCERGGG-ERTKKGQVVKDAGG 414
+FPS Q+PLI G+ CS L ++ GKLV+C +GG +KG + DAG
Sbjct: 383 NFPSTQWPLI-ADTRGD---GTCSDEHLMKEHVAGKLVVCNQGGNLTGLRKGSYLHDAGA 438
Query: 415 IGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKS 474
GM+L+ + G H+LP + Y +GE +KAY+ ST SP A +++KGTV G +
Sbjct: 439 AGMVLIGPEFMGSMVQPKSHILPVAQIVYLSGEELKAYMKSTKSPTAALIYKGTVFGDRK 498
Query: 475 TPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFS--VENKTNTKST-FNMVAGTSM 531
TPE+A FSSRGPS + GILKPDI GPGVNI+A P + + N + F++++GTSM
Sbjct: 499 TPEVAPFSSRGPSRQNQGILKPDITGPGVNIIAGVPVTSGLATPPNPLAAKFDIMSGTSM 558
Query: 532 SCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHV 591
+ PHLSG+AAL+K AHP WSPAAIKSA+MTTAD + +PI DQ+ A+MF +GAG +
Sbjct: 559 AAPHLSGIAALIKKAHPKWSPAAIKSAMMTTADTLDRRRRPITDQKGNNANMFGLGAGFI 618
Query: 592 NPSSANDPGLIYDIQPDDYIPYLCGLNYSDQHVQDIV--MINVQCSKVSGIAETELNYPS 649
NP+ A +PGL+YD+ DY+P+LCGL YSD V I+ +V C ++ + + +LNYPS
Sbjct: 619 NPTKAMNPGLVYDLTAQDYVPFLCGLGYSDHEVSSIIHPAPSVSCKQLPAVEQKDLNYPS 678
Query: 650 FSVILGSTSQ--TYNRTVTNVG-QAESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYS 706
+V L + +R VTNVG + ++ Y K+ P V VTV P+ + F K NQ ++
Sbjct: 679 ITVFLDREPYVVSVSRAVTNVGPRGKAVYAAKVDMPATVLVTVTPDTLRFKKVNQVRKFT 738
Query: 707 ITFTRSQ--KTSALFAQGYLSWVSTKHTVRSPIAVRFQ 742
+TF + A+G L WVS H VRSPI V Q
Sbjct: 739 VTFRGANGGPMKGGVAEGQLRWVSPDHVVRSPIVVSAQ 776
|
|
| TAIR|locus:2020245 SDD1 "AT1G04110" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1235 (439.8 bits), Expect = 8.8e-158, Sum P(2) = 8.8e-158
Identities = 267/595 (44%), Positives = 364/595 (61%)
Query: 176 FKGAACNNKLIGARNFLQG-----STGEPP---------LDDEXXXXXXXXXXXXNFVNG 221
F ++CN KLIGAR F++G S E P D + V+
Sbjct: 178 FSSSSCNRKLIGARFFIRGHRVANSPEESPNMPREYISARDSTGHGTHTASTVGGSSVSM 237
Query: 222 ANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASV 281
ANV G G A G+AP AH+A+YKVC F+GC S + AA+D AI D VDVLSLSLG +
Sbjct: 238 ANVLGNGAGVARGMAPGAHIAVYKVCWFNGCYSSDILAAIDVAIQDKVDVLSLSLGGFPI 297
Query: 282 PFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVEL 341
P ++D +AIG+F A+++ I V C+AGN GP S+ +N APW+ ++GA T DR A V L
Sbjct: 298 PLYDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRL 357
Query: 342 GNQAVYDGEALFQPKDFPS--KQFPLIYPGANGNVSSAQCSPGSLS-SNIRGKLVLCERG 398
N + GE+L+ K + ++ +IY G+ S C GSL IRGK+V+C+RG
Sbjct: 358 ANGKLLYGESLYPGKGIKNAGREVEVIYV-TGGDKGSEFCLRGSLPREEIRGKMVICDRG 416
Query: 399 GGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSS 458
R++KG+ VK+AGG+ MIL N ++N D HLLPA + Y +KAY+N+T
Sbjct: 417 VNGRSEKGEAVKEAGGVAMILANTEINQEEDSIDVHLLPATLIGYTESVLLKAYVNATVK 476
Query: 459 PNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENK-- 516
P A I+F GTVIG+ PE+A FS+RGPS+A+P ILKPD+I PGVNI+AAWP ++
Sbjct: 477 PKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPGVNIIAAWPQNLGPTGL 536
Query: 517 --TNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIV 574
+ + F +++GTSMSCPH+SG+ AL++SA+P+WSPAAIKSA+MTTAD+ GK I
Sbjct: 537 PYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTADLYDRQGKAIK 596
Query: 575 DQRLLPADMFAVGAGHVNPSSANDPGLIYDIQPDDYIPYLCGLNYSDQHVQDIVMINVQC 634
D PA +FA+GAGHVNP A +PGL+Y+IQP DYI YLC L ++ + I NV C
Sbjct: 597 DGNK-PAGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSDILAITHKNVSC 655
Query: 635 SKV-SGIAETELNYPSFSVIL--GSTSQTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEP 691
+ + LNYPS +VI G T++ R VTNVG S Y+ + APEG+ V V P
Sbjct: 656 NGILRKNPGFSLNYPSIAVIFKRGKTTEMITRRVTNVGSPNSIYSVNVKAPEGIKVIVNP 715
Query: 692 ENISFTKKNQKAIYSITFTRSQKTS----ALFAQGYLSWVSTKHT---VRSPIAV 739
+ + F +Q Y + F +K A FAQG L+WV++ + VRSPI+V
Sbjct: 716 KRLVFKHVDQTLSYRVWFVLKKKNRGGKVASFAQGQLTWVNSHNLMQRVRSPISV 770
|
|
| UNIPROTKB|Q0D3H9 Os07g0685900 "cDNA clone:001-131-E09, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1531 (544.0 bits), Expect = 4.3e-157, P = 4.3e-157
Identities = 328/725 (45%), Positives = 455/725 (62%)
Query: 32 TYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCYKNVITGFAAKLT 91
TYIV+V +P + D W+ SFLP+S + +++PR+++ Y ++GFAA+LT
Sbjct: 46 TYIVFV-EPPPPLGHGDGEDDHCRWHESFLPLSELAGSDDEPRLVHSYTEAVSGFAARLT 104
Query: 92 AEQAKAMETKEGFISAHVEKTLQLHTTHTPNFLGLHQNSGFWKDSNLGKGVIIGVMDTGI 151
+ A+ K GF+ A ++TLQL TTHTP FLGL +++G W+DS GKGVI+GV+DTGI
Sbjct: 105 GGELDAVSKKPGFVRAIPDRTLQLMTTHTPEFLGLRKDAGLWRDSGYGKGVIVGVLDTGI 164
Query: 152 TPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEXXXXXXX 211
HPSF D G+PPPPA+WKG C A CNNKLIG ++F+ G D
Sbjct: 165 DSSHPSFDDRGVPPPPARWKGSCRDTAARCNNKLIGVKSFIPGDNDTS--DGVGHGTHTA 222
Query: 212 XXXXXNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDV 271
NFV+GA V G GT GIAP AH+A+Y+VC +GC+ES + +D AI DGVDV
Sbjct: 223 STAAGNFVDGAAVNGLGVGTVAGIAPGAHIAMYRVCTVEGCTESALLGGIDEAIKDGVDV 282
Query: 272 LSLSLGAA-SVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGAST 330
LS+SLG++ + + +DPLAIG+FSA+ K I V C+AGN GP +T SNEAPW+++V AS+
Sbjct: 283 LSISLGSSFAADYDKDPLAIGAFSAVSKGIVVVCAAGNNGPAFATLSNEAPWMVTVAASS 342
Query: 331 TDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRG 390
DR A LG+ V DGEAL Q + K +PL Y + C + +I+G
Sbjct: 343 VDRRFSAPTRLGDGRVIDGEALDQASNSSGKAYPLSYSKEQAGL----CEIAD-TGDIKG 397
Query: 391 KLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIK 450
K+VLC+ G T + K G G++L+N L GY+T+ + V V+ A G +
Sbjct: 398 KIVLCKLEGSPPTVVDNI-KRGGAAGVVLINTDLLGYTTILRDYGSDVVQVTVADGARMI 456
Query: 451 AYINSTSSPNATIVFKG-TVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAW 509
Y S + P ATI FK TV+G + P LA+FSSRGPS + GILKPDI+ PG+NILAAW
Sbjct: 457 EYAGSRN-PVATITFKNRTVLGVRPAPTLAAFSSRGPSFLNVGILKPDIMAPGLNILAAW 515
Query: 510 PFSVENKTNTKS---TFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIV 566
P SV +T+ + +FN+++GTSM+ PH+SGVAAL+KS HPDWSPAAIKSAI+TT+D V
Sbjct: 516 PSSVA-RTDAAAAPPSFNVISGTSMATPHVSGVAALVKSVHPDWSPAAIKSAILTTSDEV 574
Query: 567 SLDGKPIVDQRLLPADMFA---VGAGHVNPSSANDPGLIYDIQPDDYIPYLCGLNYSDQH 623
G PI+D++ +F GAGHVNP+ A DPGL+YDI +Y +LC L ++
Sbjct: 575 DNTGGPILDEQHNKTMLFGPFNTGAGHVNPTRAADPGLVYDIGVAEYAGFLCTL--VGEY 632
Query: 624 VQDIVMIN--VQ-CSKVSGIAETELNYPSFSVILGSTSQTYNRTVTNVGQAESSYTHKIV 680
V I++ N +Q C + + ++ LNYPS +V L T T NRTVTNVG AES+YT +
Sbjct: 633 VLPIIVRNSSLQSCRDLPRVGQSHLNYPSITVELEKTPFTVNRTVTNVGPAESTYTANVT 692
Query: 681 --APEGVTVTVEPENISFTKKNQKAIYSIT----FTRSQKTSALFAQGYLSWVSTKHTVR 734
A + ++V PE + F+K +K +++T FT++ + A+ +G L WVS +H VR
Sbjct: 693 LAAETSLKLSVSPETLVFSKAGEKKTFAVTVSGRFTKAAQAVAVL-EGSLRWVSPEHVVR 751
Query: 735 SPIAV 739
SP+ +
Sbjct: 752 SPVVL 756
|
|
| UNIPROTKB|Q7XPR9 OSJNBa0065O17.12 "Os04g0558900 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1527 (542.6 bits), Expect = 1.1e-156, P = 1.1e-156
Identities = 318/691 (46%), Positives = 431/691 (62%)
Query: 74 RMLYCYKNVITGFAAKLTAEQAKAMETKEGFISAHVEKTLQLHTTHTPNFLGLH---QNS 130
R++Y Y+NV+ GFAA+LT E+ + M + FI A EKT QL TTHTP LGL +
Sbjct: 93 RLIYSYRNVVNGFAARLTPEEVEEMSKNDWFIRADPEKTYQLQTTHTPQLLGLMGGARRG 152
Query: 131 GFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARN 190
G W SN+G+G+IIG++D GI GHPSF GM PPPAKW G+C+F CNNKLIGAR+
Sbjct: 153 GVWNTSNMGEGIIIGILDDGIYAGHPSFDGAGMKPPPAKWSGRCDFNKTVCNNKLIGARS 212
Query: 191 FLQGST----G--EP--PLDDEXXXXXXXXXXXXNFVNGANVFGQADGTAVGIAPLAHLA 242
+ + + G +P P+++ +FV GANV G A GTA G+AP AH+A
Sbjct: 213 YFESAKWKWKGLRDPVLPINEGQHGTHTSSTAAGSFVPGANVSGYAVGTAGGMAPRAHIA 272
Query: 243 IYKVCDFD-GCSESRVYAAMDTAIDDGVDVLSLSLGAASV-PFFEDPLAIGSFSAIQKEI 300
Y+VC + GC + AA+D A++DGVD+LSLSLG F +DP+++G +SA +
Sbjct: 273 FYQVCYVEKGCDRDDILAAVDDALEDGVDILSLSLGDEQAGDFSDDPVSLGGYSAAMHGV 332
Query: 301 FVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPS 360
VS + GN GP PST NEAPW+++VGA TTDR VA+V+LG+ DGE+L +PKDF +
Sbjct: 333 LVSAAGGNTGPGPSTVVNEAPWVITVGAGTTDRRFVATVKLGSGVSLDGESLSEPKDFGA 392
Query: 361 KQFPLIYPGANGNVSSAQCSPGSL--SSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMI 418
+ PL++ +V C+ S+ + N+ GK+++C+ GG K ++V +G GMI
Sbjct: 393 EMRPLVH-----DVGDGMCTTESVLRAMNVTGKIIICDAGGDVSVAKAKLVLRSGAAGMI 447
Query: 419 LMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPEL 478
++ ++ G + PH+LP V + + G+ IKAYI ST SP A +FKGTV KS P
Sbjct: 448 VIAPQVYGSVIVPRPHVLPTVQMPFMIGQKIKAYIRSTPSPTANFIFKGTVFKAKS-PVA 506
Query: 479 ASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKT----NTKSTFNMVAGTSMSCP 534
A FSSRGP+ S GILKPDIIGPGVNILA P +E+ F++ +GTSM+ P
Sbjct: 507 APFSSRGPNRRSRGILKPDIIGPGVNILAGVP-KIEDLALGAEEVMPKFDIKSGTSMAAP 565
Query: 535 HLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPS 594
H+SGVAAL+K+AHP WSPAAIKSA+MTTAD KPI D PA +A+GAG+VN
Sbjct: 566 HISGVAALIKNAHPTWSPAAIKSAMMTTADYTDNLRKPITDVDGAPATYYAIGAGYVNAR 625
Query: 595 SANDPGLIYDIQPDDYIPYLCGLNYSDQHVQDIVMIN--VQCSKVSGIAETELNYPSFSV 652
A DPGL+Y++ DYIPYLCGL Y DQ V I+ V+C+K+ + + +LNYPS +
Sbjct: 626 KAIDPGLVYNLSSLDYIPYLCGLGYKDQKVNSIIHPGPAVECAKMPKVDQKDLNYPSITA 685
Query: 653 ILGSTSQ--TYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITF- 709
+L + NR+ TNVG A S+Y ++ P + V V P + F N+ Y++T
Sbjct: 686 VLDMEPYEVSINRSATNVGAATSTYAVEVDVPATLAVEVNPAKLEFRALNEVLNYTVTVK 745
Query: 710 TRSQKTSALFAQGYLSWVS-TKHTVRSPIAV 739
T S K A +G L WVS K+ VRSPI V
Sbjct: 746 TASGKAPASTIEGQLKWVSGKKYVVRSPILV 776
|
|
| UNIPROTKB|Q94H95 OSJNBb0048A17.11 "cDNA clone:J033123P12, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1521 (540.5 bits), Expect = 4.9e-156, P = 4.9e-156
Identities = 330/736 (44%), Positives = 443/736 (60%)
Query: 32 TYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCYKNVITGFAAKLT 91
TYIV++ + A + ++ WY + L S+++ +LY Y ++ G++A+LT
Sbjct: 36 TYIVHMSR----SAKPNDFVEHGEWYAASL-----QSVSDAATVLYTYDTIVHGYSARLT 86
Query: 92 AEQAKAMETKEGFISAHVEKTLQLHTTHTPNFLGLHQNSGFWKDSNLGKGVIIGVMDTGI 151
+A+A+E++ G + + E +LHTT TP FLGL + + SN G VI+GV+DTG+
Sbjct: 87 RAEAEALESQPGVLLVNPEVRYELHTTRTPEFLGLDRTDALFPQSNTGSDVIVGVLDTGV 146
Query: 152 TPGHPSFSDEGMPPPPAKWKGKCE----FKGAACNNKLIGARNFLQG---STG------- 197
P PS+ D G+ P PA WKGKCE F +ACN KLIGAR FL G + G
Sbjct: 147 WPERPSYDDAGLGPVPAGWKGKCEEGNDFNASACNKKLIGARFFLTGYEAAKGPVDTSKE 206
Query: 198 -EPPLDDEXXXXXXXXXXXXNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESR 256
P D++ + V GA++ G A GTA G+AP A +A YKVC GC S
Sbjct: 207 SRSPRDNDGHGTHTSSTAAGSAVRGADLLGYAAGTAKGMAPHARVATYKVCWVGGCFSSD 266
Query: 257 VYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTS 316
+ AM+ A++DGVDVLSLSLG + ++ D +A+G++SA+++ IFVSCSAGN GP +T
Sbjct: 267 ILKAMEVAVNDGVDVLSLSLGGGTADYYRDSIAVGAYSAMERGIFVSCSAGNAGPGSATL 326
Query: 317 SNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVS- 375
SN APWI +VGA T DR A V LGN Y G +L+ K P+ P IY G N S
Sbjct: 327 SNGAPWITTVGAGTLDRDFPAHVVLGNGKNYSGVSLYSGKQLPTTPVPFIYAGNASNSSM 386
Query: 376 SAQCSPGSL-SSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPH 434
A C GSL + GK+VLC+RG R +KG VVKDAGG GM+L N NG +AD H
Sbjct: 387 GALCMSGSLIPEKVAGKIVLCDRGTNARVQKGFVVKDAGGAGMVLANTAANGEELVADAH 446
Query: 435 LLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGIL 494
+LP V AG++++AY S +P A+IVF GT +G + +P +A+FSSRGP+ +PGIL
Sbjct: 447 VLPGAGVGQKAGDTMRAYALSDPNPTASIVFAGTQVGIQPSPVVAAFSSRGPNTVTPGIL 506
Query: 495 KPDIIGPGVNILAAWPFSVENK----TNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDW 550
KPD+I PGVNILAAW SV + + FN+++GTSMSCPH+SG+AALL++AH DW
Sbjct: 507 KPDLIAPGVNILAAWSGSVGPSGLAGDSRRVGFNIISGTSMSCPHVSGLAALLRAAHQDW 566
Query: 551 SPAAIKSAIMTTADIVSLDGKPIVDQRL-LPADMFAVGAGHVNPSSANDPGLIYDIQPDD 609
SPAAI+SA+MTT+ +G I+D LPA VGAGHV+PS A DPGL+YDI D
Sbjct: 567 SPAAIRSALMTTSYNGYPNGNGILDVATGLPATPLDVGAGHVDPSKAVDPGLVYDIAAAD 626
Query: 610 YIPYLCGLNYSDQHVQDIVMINVQ-CSKVSGIAETELNYPSFSVILGSTSQT--YNRTVT 666
Y+ +LC ++Y + + CS A T LNYPSFSV +T T + RTVT
Sbjct: 627 YVDFLCAISYGPMQIAALTKHTTDACSGNRTYAVTALNYPSFSVTFPATGGTEKHTRTVT 686
Query: 667 NVGQAESSYTHKIVAPEG---VTVTVEPENISFTKKNQKAIYSITFTRSQKTSALFAQGY 723
NVGQ +Y A G VTV+VEP ++FTK +K Y+++F + S G
Sbjct: 687 NVGQP-GTYKVTASAAAGSTPVTVSVEPSTLTFTKSGEKQSYTVSFAAAAMPSGTNGFGR 745
Query: 724 LSWVSTKHTVRSPIAV 739
L W S H V SPIAV
Sbjct: 746 LVWSSDHHVVSSPIAV 761
|
|
| TAIR|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1511 (537.0 bits), Expect = 5.6e-155, P = 5.6e-155
Identities = 329/757 (43%), Positives = 458/757 (60%)
Query: 10 FSLTFSPAFALTSNGSDTDSLETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSI 69
F L F S+ S TYIV++ K Q +S L +WY S L SI
Sbjct: 11 FFLLLCLGFCHVSSSSSDQG--TYIVHMAK---SQMPSSFDLH-SNWYDSSL-----RSI 59
Query: 70 NNQPRMLYCYKNVITGFAAKLTAEQAKAMETKEGFISAHVEKTLQLHTTHTPNFLGLHQN 129
++ +LY Y+N I GF+ +LT E+A ++ T+ G IS E +LHTT TP FLGL ++
Sbjct: 60 SDSAELLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEH 119
Query: 130 SG-FWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCE----FKGAACNNK 184
+ + ++ V++GV+DTG+ P S+SDEG P P+ WKG CE F + CN K
Sbjct: 120 TADLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRK 179
Query: 185 LIGARNFLQG--STGEP---------PLDDEXXXXXXXXXXXXNFVNGANVFGQADGTAV 233
LIGAR F +G ST P P DD+ + V GA++ G A GTA
Sbjct: 180 LIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTAR 239
Query: 234 GIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSF 293
G+AP A +A+YKVC GC S + AA+D AI D V+VLS+SLG ++ D +AIG+F
Sbjct: 240 GMAPRARVAVYKVCWLGGCFSSDILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVAIGAF 299
Query: 294 SAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALF 353
+A+++ I VSCSAGN GP+ S+ SN APWI +VGA T DR A LGN + G +LF
Sbjct: 300 AAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLF 359
Query: 354 QPKDFPSKQFPLIYPGANGNVSSAQ-CSPGSL-SSNIRGKLVLCERGGGERTKKGQVVKD 411
+ + P K P IY G N ++ C G+L ++GK+V+C+RG R +KG VVK
Sbjct: 360 KGEALPDKLLPFIYAGNASNATNGNLCMTGTLIPEKVKGKIVMCDRGINARVQKGDVVKA 419
Query: 412 AGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIG 471
AGG+GMIL N NG +AD HLLPA V AG+ I+ Y+ + +P A+I GTV+G
Sbjct: 420 AGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVG 479
Query: 472 KKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAW-----PFSVENKTNTKSTFNMV 526
K +P +A+FSSRGP+ +P ILKPD+I PGVNILAAW P + + + + FN++
Sbjct: 480 VKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSR-RVEFNII 538
Query: 527 AGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRL-LPADMFA 585
+GTSMSCPH+SG+AALLKS HP+WSPAAI+SA+MTTA DGKP++D P+ F
Sbjct: 539 SGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTPFD 598
Query: 586 VGAGHVNPSSANDPGLIYDIQPDDYIPYLCGLNYSDQHVQDIVMINVQCSKVSGIAETEL 645
GAGHV+P++A +PGLIYD+ +DY+ +LC LNY+ ++ + N C + +L
Sbjct: 599 HGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADL 658
Query: 646 NYPSFSV-ILGSTSQTYNRTVTNVGQAESSYTHKIVAPE-GVTVTVEPENISFTKKNQKA 703
NYPSF+V + G + Y RTVT+VG A +Y+ K+ + GV ++VEP ++F + N+K
Sbjct: 659 NYPSFAVNVDGVGAYKYTRTVTSVGGA-GTYSVKVTSETTGVKISVEPAVLNFKEANEKK 717
Query: 704 IYSITFT-RSQKTSALFAQGYLSWVSTKHTVRSPIAV 739
Y++TFT S K S + G + W KH V SP+A+
Sbjct: 718 SYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAI 754
|
|
| TAIR|locus:2165366 SBT1.3 "AT5G51750" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1246 (443.7 bits), Expect = 1.7e-154, Sum P(2) = 1.7e-154
Identities = 276/639 (43%), Positives = 380/639 (59%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCE----FKGAACNNKLIGA 188
W + V++GV+DTGI P SF+D GM P PA W+G CE F CN K++GA
Sbjct: 139 WAERVTDHDVVVGVLDTGIWPESESFNDTGMSPVPATWRGACETGKRFLKRNCNRKIVGA 198
Query: 189 RNFLQG---STGE--------PPLDDEXXXXXXXXXXXXNFVNGANVFGQADGTAVGIAP 237
R F +G +TG+ P D + + V GAN+FG A GTA G+A
Sbjct: 199 RVFYRGYEAATGKIDEELEYKSPRDRDGHGTHTAATVAGSPVKGANLFGFAYGTARGMAQ 258
Query: 238 LAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQ 297
A +A YKVC GC S + +A+D A+ DGV VLS+SLG + D L+I +F A++
Sbjct: 259 KARVAAYKVCWVGGCFSSDILSAVDQAVADGVQVLSISLGGGVSTYSRDSLSIATFGAME 318
Query: 298 KEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKD 357
+FVSCSAGN GP+P + +N +PWI +VGAST DR A+V++G + G +L++ +
Sbjct: 319 MGVFVSCSAGNGGPDPISLTNVSPWITTVGASTMDRDFPATVKIGTMRTFKGVSLYKGRT 378
Query: 358 -FP-SKQFPLIYPGANGNVS--SAQCSPGSLSS-NIRGKLVLCERGGGERTKKGQVVKDA 412
P +KQ+PL+Y G N + ++ C G+L ++ GK+V+C+RG R +KGQVVK A
Sbjct: 379 VLPKNKQYPLVYLGRNASSPDPTSFCLDGALDRRHVAGKIVICDRGVTPRVQKGQVVKRA 438
Query: 413 GGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGK 472
GGIGM+L N NG +AD H+LPAV V G+ IK Y ++ A++ GT IG
Sbjct: 439 GGIGMVLTNTATNGEELVADSHMLPAVAVGEKEGKLIKQYAMTSKKATASLEILGTRIGI 498
Query: 473 KSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAW-----PFSVENKTNTKSTFNMVA 527
K +P +A+FSSRGP+ S ILKPD++ PGVNILAAW P S+ + + FN+++
Sbjct: 499 KPSPVVAAFSSRGPNFLSLEILKPDLLAPGVNILAAWTGDMAPSSLSSDPR-RVKFNILS 557
Query: 528 GTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQR-LLPADMFAV 586
GTSMSCPH+SGVAAL+KS HPDWSPAAIKSA+MTTA + KP+ D P+ +
Sbjct: 558 GTSMSCPHVSGVAALIKSRHPDWSPAAIKSALMTTAYVHDNMFKPLTDASGAAPSSPYDH 617
Query: 587 GAGHVNPSSANDPGLIYDIQPDDYIPYLCGLNYSDQHVQDIVM-INVQCSKVSGIAETEL 645
GAGH++P A DPGL+YDI P +Y +LC + S ++ N C L
Sbjct: 618 GAGHIDPLRATDPGLVYDIGPQEYFEFLCTQDLSPSQLKVFTKHSNRTCKHTLAKNPGNL 677
Query: 646 NYPSFSVILGSTSQ----TYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQ 701
NYP+ S + + T RTVTNVG SSY + +G +VTV+P+ ++FT K+Q
Sbjct: 678 NYPAISALFPENTHVKAMTLRRTVTNVGPHISSYKVSVSPFKGASVTVQPKTLNFTSKHQ 737
Query: 702 KAIYSITF-TRSQKTSALFAQGYLSWVSTKHTVRSPIAV 739
K Y++TF TR + F G L W ST H VRSP+ +
Sbjct: 738 KLSYTVTFRTRFRMKRPEF--GGLVWKSTTHKVRSPVII 774
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O64495 | SDD1_ARATH | 3, ., 4, ., 2, 1, ., - | 0.4419 | 0.9636 | 0.9225 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00001054001 | SubName- Full=Chromosome chr2 scaffold_112, whole genome shotgun sequence; (740 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 742 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-99 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 4e-35 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 7e-33 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 2e-30 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 5e-28 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 1e-24 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 3e-22 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 2e-21 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 6e-21 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 1e-19 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 1e-19 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 6e-18 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 4e-16 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 6e-16 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 3e-15 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 7e-15 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 2e-14 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 2e-14 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 2e-14 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 3e-14 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 3e-14 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 8e-14 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 2e-13 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 5e-13 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 7e-13 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 1e-12 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 2e-12 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 2e-12 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 4e-12 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 1e-11 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 2e-11 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 6e-11 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 2e-10 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 2e-10 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 5e-10 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 2e-09 | |
| cd02133 | 143 | cd02133, PA_C5a_like, PA_C5a_like: Protease-associ | 3e-09 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 5e-09 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 9e-09 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 1e-08 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 2e-08 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 3e-08 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 5e-08 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 5e-08 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 8e-08 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 1e-07 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 3e-07 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 5e-07 | |
| cd00538 | 126 | cd00538, PA, PA: Protease-associated (PA) domain | 9e-07 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 1e-06 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 2e-06 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 5e-06 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 1e-05 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 1e-05 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 2e-05 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 4e-05 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 9e-05 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 1e-04 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 2e-04 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 2e-04 | |
| cd02132 | 139 | cd02132, PA_GO-like, PA_GO-like: Protease-associat | 4e-04 | |
| TIGR03895 | 602 | TIGR03895, protease_PatA, cyanobactin maturation p | 6e-04 | |
| cd04059 | 297 | cd04059, Peptidases_S8_Protein_convertases_Kexins_ | 8e-04 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 0.001 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 0.002 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 0.004 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 309 bits (793), Expect = 1e-99
Identities = 121/235 (51%), Positives = 146/235 (62%), Gaps = 17/235 (7%)
Query: 113 LQLHTTHTPNFLGLHQ--NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKW 170
QLHTT +P+FLGL +N G+G+IIGV+DTGI P HPSF+D G P P W
Sbjct: 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTW 60
Query: 171 KGKCE----FKGAACNNKLIGARNFLQG--------STGEP--PLDDEGHGTHTATTAAG 216
G C F +CNNKLIGAR F G S GE P D +GHGTHTA+TAAG
Sbjct: 61 PGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAG 120
Query: 217 NFVNGANVFGQADGTAVGIAPLAHLAIYKVC-DFDGCSESRVYAAMDTAIDDGVDVLSLS 275
N V A+V G A GTA G+AP A +A+YKVC GC S + AA+D AI DGVDV+S S
Sbjct: 121 NVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYS 180
Query: 276 LGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGAST 330
+G S +EDP+AI A++ IFV+ SAGN GP ST N APW+ +V AST
Sbjct: 181 IGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST 235
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 4e-35
Identities = 65/129 (50%), Positives = 83/129 (64%), Gaps = 6/129 (4%)
Query: 338 SVELGNQAVYDGEALFQPKDFPSKQFPLIYPGAN-GNVSSAQCSPGSL-SSNIRGKLVLC 395
V LGN G++L+ K +PL+Y AN G+V ++ C PGSL S ++GK+VLC
Sbjct: 1 VVTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLC 57
Query: 396 ERGGGE-RTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYIN 454
+RGG R KG VK AGG GMIL ND +G +AD H+LPAVHV Y G +I +YIN
Sbjct: 58 DRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYIN 117
Query: 455 STSSPNATI 463
STS+P ATI
Sbjct: 118 STSNPTATI 126
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 7e-33
Identities = 46/74 (62%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 492 GILKPDIIGPGVNILAAW-PFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDW 550
LKPDI PGV+ILAAW P + F ++GTSM+ PH++GVAALLKSAHPDW
Sbjct: 234 STLKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDW 293
Query: 551 SPAAIKSAIMTTAD 564
SPAAIKSA+MTTA
Sbjct: 294 SPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-30
Identities = 75/196 (38%), Positives = 99/196 (50%), Gaps = 16/196 (8%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGE 198
GKGV + V+DTGI HP G P K KG +F + + R +
Sbjct: 1 GKGVKVAVIDTGIDYTHPDLGGPGFPND--KVKGGYDFVDD--DYDPMDTRPYPSPLGDA 56
Query: 199 PPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRV 257
D GHGTH A AGN G GT G+AP A L YKV G + +
Sbjct: 57 SAGDATGHGTHVAGIIAGN--------GVNVGTIKGVAPKADLYAYKVLGPGGSGTTDVI 108
Query: 258 YAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPST-- 315
AA++ A+DDG+DV++LSLG +SV +DP AI +A++ + V +AGN GP P T
Sbjct: 109 IAAIEQAVDDGMDVINLSLG-SSVNGPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIG 167
Query: 316 SSNEAPWILSVGASTT 331
S AP ++VGAST
Sbjct: 168 SPATAPSAITVGASTV 183
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 5e-28
Identities = 54/140 (38%), Positives = 74/140 (52%), Gaps = 15/140 (10%)
Query: 457 SSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENK 516
++P+A V TV + SSRGP S +KPDI+ PGV+I++ P
Sbjct: 171 TAPSAITVGASTVADVAEADTVGPSSSRGPP-TSDSAIKPDIVAPGVDIMSTAP----GS 225
Query: 517 TNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQ 576
+ + GTSM+ PH++G AALLK AHPDWSPA IK+A+M TA KP+ D
Sbjct: 226 GTGYARMS---GTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTA-------KPLYDS 275
Query: 577 RLLPADMFAVGAGHVNPSSA 596
+ + GAG V+ A
Sbjct: 276 DGVVYPVSRQGAGRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 1e-24
Identities = 64/202 (31%), Positives = 89/202 (44%), Gaps = 37/202 (18%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGE 198
GKG+ + V+DTGI HP F + N + G T
Sbjct: 1 GKGITVAVLDTGIDAPHPDFDGRI--------------------IRFADFVNTVNGRT-- 38
Query: 199 PPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRV 257
P DD GHGTH A AG+ ++G G+AP A+L KV D G SES +
Sbjct: 39 TPYDDNGHGTHVAGIIAGSGR-------ASNGKYKGVAPGANLVGVKVLDDSGSGSESDI 91
Query: 258 YAAMDTAIDD----GVDVLSLSLGA-ASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPN 312
A +D +++ + V++LSLGA + EDPL I V +AGN GP
Sbjct: 92 IAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPG 151
Query: 313 PST--SSNEAPWILSVGASTTD 332
P T S +P +++VGA +
Sbjct: 152 PGTITSPGNSPKVITVGAVDDN 173
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 3e-22
Identities = 64/196 (32%), Positives = 86/196 (43%), Gaps = 37/196 (18%)
Query: 141 GVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPP 200
GV + V+DTG+ HP + A+W +F + +
Sbjct: 1 GVTVAVLDTGVDADHPDLAGR-----VAQWA---DFDEN-------------RRISATEV 39
Query: 201 LDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAA 260
D GHGTH + T G G A G +G+AP A L KV D G S S++ A
Sbjct: 40 FDAGGHGTHVSGTIGG---------GGAKGVYIGVAPEADLLHGKVLDDGGGSLSQIIAG 90
Query: 261 MDTAIDDGVDVLSLSLG--AASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSN 318
M+ A++ DV+S+SLG S E+ A+ + S +FV SAGNEG S S
Sbjct: 91 MEWAVEKDADVVSMSLGGTYYSEDPLEE--AVEALSNQTGALFVV-SAGNEGHGTSGSPG 147
Query: 319 EAPWILSVGASTTDRS 334
A LSVGA DR
Sbjct: 148 SAYAALSVGA--VDRD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 2e-21
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 478 LASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLS 537
++ FSSRGP+ G +KPD++ PG NI++ S + ++GTSM+ PH+S
Sbjct: 180 ISYFSSRGPT--GDGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEMSGTSMATPHVS 237
Query: 538 GVAALLKSAHPDWSPAAIKSAIMTTAD 564
G ALL A+P +P +K + TA
Sbjct: 238 GAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 6e-21
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 41/199 (20%)
Query: 141 GVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPP 200
GV + V+DTGI HP ++G NF G
Sbjct: 1 GVKVAVIDTGIDSSHPDLKL-----------------------NIVGGANFT-GDDNNDY 36
Query: 201 LDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGC-SESRVYA 259
D GHGTH A A ++ VG+AP A L KV + DG + S + A
Sbjct: 37 QDGNGHGTHVAGIIAA--LDNGVGV-------VGVAPEADLYAVKVLNDDGSGTYSDIIA 87
Query: 260 AMDTAIDDGVDVLSLSLGAAS-VPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSN 318
++ AI++G+D++++SLG S P + + A I V +AGN G S+
Sbjct: 88 GIEWAIENGMDIINMSLGGPSDSPALREAIK----KAYAAGILVVAAAGNSGNGDSSYDY 143
Query: 319 EA--PWILSVGASTTDRSI 335
A P +++VGA ++ +
Sbjct: 144 PAKYPSVIAVGAVDSNNNR 162
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 1e-19
Identities = 53/203 (26%), Positives = 77/203 (37%), Gaps = 36/203 (17%)
Query: 143 IIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPL- 201
+GV+DTGI HP + G +F+ P
Sbjct: 1 TVGVLDTGIDVNHP------------------DLSGRYIGLAYRNGYDFVDNDPDPTPDD 42
Query: 202 DDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAM 261
D+ GHGTH A A NG+ VG+AP A L KV G ++S + A+
Sbjct: 43 DNNGHGTHVAGIIAAGDNNGSGG--------VGVAPNAKLESVKVLPGSGGTDSELAGAI 94
Query: 262 DTAI--DDGVDVLSLSLGAASVPFFEDPLAIGSF---SAIQKEIFVSCSAGNEGPNPSTS 316
+ A + + V+++SLG P AI A K +AGN G +
Sbjct: 95 EWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLFVVAAGNGGDYADNN 154
Query: 317 SNEAP---W-ILSVGASTTDRSI 335
P I++VGA T + +I
Sbjct: 155 PVSDPASANNIITVGAVTENGTI 177
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 1e-19
Identities = 58/196 (29%), Positives = 81/196 (41%), Gaps = 33/196 (16%)
Query: 142 VIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPL 201
V + V+DTG+ P HP G + + P
Sbjct: 1 VTVAVIDTGVDPDHPDLDGLF-------------------GGGDGGNDDDDNENGPTDPD 41
Query: 202 DDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAA 260
D GHGTH A A + N G VG+AP A L KV D DG S S + AA
Sbjct: 42 DGNGHGTHVAGIIAASANN---------GGGVGVAPGAKLIPVKVLDGDGSGSSSDIAAA 92
Query: 261 MDTAI-DDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNE 319
+D A D G DV++LSLG P ++ + + V +AGN+GP+ T+
Sbjct: 93 IDYAAADQGADVINLSLGGPGSPPSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGY 152
Query: 320 ---APWILSVGASTTD 332
+P +++VGA D
Sbjct: 153 PAASPNVIAVGAVDRD 168
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 6e-18
Identities = 67/209 (32%), Positives = 92/209 (44%), Gaps = 37/209 (17%)
Query: 138 LGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTG 197
GKGV + V+DTGI HP+ G P K G +F G + T
Sbjct: 11 TGKGVKVAVVDTGIDYTHPALG--GCFGPGCKVAGGYDFVGDDYD------------GTN 56
Query: 198 EP-----PLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCD-FDG 251
P P+D +GHGTH A A N N +G G+AP A L Y+V
Sbjct: 57 PPVPDDDPMDCQGHGTHVAGIIAAN----PNAYG-----FTGVAPEATLGAYRVFGCSGS 107
Query: 252 CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGP 311
+E + AA A +DG DV++ SLG S + EDP A+ + + + V+ +AGN+G
Sbjct: 108 TTEDTIIAAFLRAYEDGADVITASLGGPS-GWSEDPWAVVASRIVDAGVVVTIAAGNDG- 165
Query: 312 NPSTSSNEAPWILSVGASTTDRSIVASVE 340
P+ S AS VASV+
Sbjct: 166 ------ERGPFYASSPASGRGVIAVASVD 188
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 477 ELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHL 536
+A FS+ G + KPDI+ PG NIL++ P ++ +GTSM+ P +
Sbjct: 176 TIADFSNYGGPVDGI---KPDIVAPGGNILSSGP------GGDLGGYDSHSGTSMAAPLV 226
Query: 537 SGVAALLKSAHPDWSPAAIKSAIMTTAD 564
+G AALL SA+P +P +++ ++TTA
Sbjct: 227 AGAAALLLSANPSLTPETLRALLVTTAT 254
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 6e-16
Identities = 57/221 (25%), Positives = 88/221 (39%), Gaps = 26/221 (11%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAAC--------NNKLIGARN 190
G+G+++ V+D+G+ P H +F AK+ + E K N K+ A N
Sbjct: 10 GEGMVVAVIDSGVDPTHDAFR--LDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYN 67
Query: 191 FLQGS-TGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKV--- 246
+ + D HG H A AGN N G G+AP A L KV
Sbjct: 68 YADNNDDILDEDDGSSHGMHVAGIVAGNGDEEDNGEG-----IKGVAPEAQLLAMKVFSN 122
Query: 247 CDFDGCSESRVYAAMDTAIDDGVDVLSLSLG-AASVPFFEDPLAIGSFSAIQKEIFVSCS 305
+ + A++ A+ G DV+++SLG A +DP A + + V +
Sbjct: 123 PEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVA 182
Query: 306 AGNEG----PNPSTSSNEAPWILSVGASTTDRSI--VASVE 340
AGN+G + P +VG+ T + VAS
Sbjct: 183 AGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASAN 223
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 3e-15
Identities = 44/120 (36%), Positives = 60/120 (50%), Gaps = 17/120 (14%)
Query: 455 STSSP-NATIVFKGTVIGKKSTPELASFSSRGPSIASPG---------ILKPDIIGPGVN 504
++ SP +A +V E A FSS G S AS KPD+ PGV+
Sbjct: 142 TSGSPGSAYAAL--SVGAVDRDDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVD 199
Query: 505 ILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTAD 564
+ +A N + ++GTSM+ PH++GVAALL +AHPD SP IK A+ TA
Sbjct: 200 VYSA-----RQGANGDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 7e-15
Identities = 47/159 (29%), Positives = 64/159 (40%), Gaps = 37/159 (23%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGE 198
G GV + V+DTGI HP+F + I ++F GE
Sbjct: 7 GAGVRVAVLDTGIDLTHPAF-----------------------AGRDITTKSF---VGGE 40
Query: 199 PPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLA-IYKVCDFDGCSESRV 257
D GHGTH A T G V G G+A A +A I KV G + +
Sbjct: 41 DVQDGHGHGTHCAGTIFGRDV---------PGPRYGVARGAEIALIGKVLGDGGGGDGGI 91
Query: 258 YAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIG-SFSA 295
A + A+ +G DV+S+SLGA + G +FS
Sbjct: 92 LAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSR 130
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 17/86 (19%)
Query: 477 ELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHL 536
ASFSS GP + ++ PGV+IL+ +P N + + GTSM+ PH+
Sbjct: 161 NRASFSSTGPEV--------ELAAPGVDILSTYP------NNDYAYLS---GTSMATPHV 203
Query: 537 SGVAALLKSAHPDWSPAAIKSAIMTT 562
+GVAAL+ S P+ + A ++ A+ T
Sbjct: 204 AGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 15/85 (17%)
Query: 479 ASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSG 538
ASFS+ G + DI PGV+IL+AW S + T T S GTSM+ PH++G
Sbjct: 184 ASFSNYGSCV--------DIFAPGVDILSAWIGS-DTATATLS------GTSMAAPHVAG 228
Query: 539 VAALLKSAHPDWSPAAIKSAIMTTA 563
+AA L S PD SPA +K+ ++ A
Sbjct: 229 LAAYLLSLGPDLSPAEVKARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 50/197 (25%), Positives = 80/197 (40%), Gaps = 46/197 (23%)
Query: 406 GQVVKDAGGIGMILMN-----DKLNGYSTLAD---------PHLLPAVHVSYAAGESIKA 451
++ G + + NGY+ LA P +L V ++AG
Sbjct: 105 NKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYNNPDIL---FV-FSAGNDGND 160
Query: 452 YINSTSSP----NATIV----------FKGTVIGKKSTPELASFSSRGPSIASPGILKPD 497
N+ SP N V +G + ++ +ASFSSRGP G +KPD
Sbjct: 161 GSNTIGSPATAKNVLTVGASNNPSVSNGEGGLGQSDNSDTVASFSSRGP--TYDGRIKPD 218
Query: 498 IIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALL----------KSAH 547
++ PG IL+A + S + +GTSM+ P ++G AALL +
Sbjct: 219 LVAPGTGILSARSGGGGIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFN 278
Query: 548 PDWSPAAIKSAIMTTAD 564
P S A +K+ ++ +A
Sbjct: 279 P--SAALLKALLINSAR 293
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 16/91 (17%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S LASFS+ G D+ PGV+IL+ P S GTSM+
Sbjct: 185 SNDALASFSNYGKKTV-------DLAAPGVDILSTSP---GGGYGYMS------GTSMAT 228
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTTAD 564
PH++G AALL S +P+ + A IK AI+++AD
Sbjct: 229 PHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 3e-14
Identities = 48/216 (22%), Positives = 74/216 (34%), Gaps = 59/216 (27%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGE 198
G GV +GV+D+GI HP F+ ++ A ++ +
Sbjct: 2 GAGVKVGVIDSGIDLSHPEFAG-----------------------RVSEASYYVAVNDAG 38
Query: 199 PPLDD--EGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESR 256
+ + HGTH A A G G+AP A L + G + S
Sbjct: 39 YASNGDGDSHGTHVAGVIAAARDGGG---------MHGVAPDATLYSARASASAGSTFSD 89
Query: 257 --VYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGS-------FSAIQKE------IF 301
+ AA D GV +++ S G GS A +F
Sbjct: 90 ADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLF 149
Query: 302 VSCSAGNEG-PNPSTSSNEAPW--------ILSVGA 328
V +AGN+G NPS ++ P+ ++V A
Sbjct: 150 VF-AAGNDGQANPSLAAAALPYLEPELEGGWIAVVA 184
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 8e-14
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 479 ASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSG 538
+ FSS GP+ LKPD+ PG NIL+ +P + +++GTSM+ P+++G
Sbjct: 189 SYFSSWGPTNE--LYLKPDVAAPGGNILSTYP-------LAGGGYAVLSGTSMATPYVAG 239
Query: 539 VAALLKSA-HPDWSPAAIKSAIMTTAD-IVSLDGKPIVDQRLLPADMFAVGAGHVN 592
AALL A H SPA ++ + +TA + DG A + GAG VN
Sbjct: 240 AAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSA---LPDLAPVAQQGAGLVN 292
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 55/196 (28%), Positives = 78/196 (39%), Gaps = 36/196 (18%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGE 198
G GV + V+DTG+ P HP K + +F+ +
Sbjct: 27 GSGVTVAVVDTGVDPTHPDLLKV----------------------KFVLGYDFVDNDS-- 62
Query: 199 PPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGC-SESRV 257
+DD GHGTH A A NG G A G+AP A + KV D +G S + +
Sbjct: 63 DAMDDNGHGTHVAGIIAAATNNG-------TGVA-GVAPKAKIMPVKVLDANGSGSLADI 114
Query: 258 YAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSS 317
+ A D G V++LSLG L A K + V +AGNEG + +
Sbjct: 115 ANGIRYAADKGAKVINLSLGG---GLGSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYP 171
Query: 318 NEAPWILSVGASTTDR 333
P ++V A+ D
Sbjct: 172 AAYPGAIAVAATDQDD 187
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 5e-13
Identities = 55/203 (27%), Positives = 82/203 (40%), Gaps = 51/203 (25%)
Query: 135 DSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQG 194
DS+ G GV + V+DTGI H EF G A I +F+
Sbjct: 20 DSSTGSGVDVYVLDTGIRTTHV------------------EFGGRA-----IWGADFV-- 54
Query: 195 STGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGC-S 253
G+P D GHGTH A T G G+A A+L KV D +G +
Sbjct: 55 -GGDPDSDCNGHGTHVAGTVG--------------GKTYGVAKKANLVAVKVLDCNGSGT 99
Query: 254 ESRVYAAMDTAIDDGVD-----VLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGN 308
S + A ++ +D V ++SLG + + +A +A+ + V +AGN
Sbjct: 100 LSGIIAGLEWVANDATKRGKPAVANMSLGGGASTALDAAVA----AAVNAGVVVVVAAGN 155
Query: 309 EGPNPSTSSNE-APWILSVGAST 330
+ S AP ++VGA+
Sbjct: 156 SNQDACNYSPASAPEAITVGATD 178
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 7e-13
Identities = 35/71 (49%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 478 LASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLS 537
LA FSSRGPS +KPDI PGVNI +A P + +GTSM+ PH++
Sbjct: 187 LADFSSRGPSTYGR--IKPDISAPGVNIRSAVP---------GGGYGSSSGTSMAAPHVA 235
Query: 538 GVAALLKSAHP 548
GVAALL SA+P
Sbjct: 236 GVAALLWSANP 246
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 54/205 (26%), Positives = 78/205 (38%), Gaps = 36/205 (17%)
Query: 140 KGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGA---ACNNKLI----GARNFL 192
V++ V+DTG+ HP D W E G N + G NF+
Sbjct: 2 GDVVVAVIDTGVDYNHPDLKD-------NMWVNPGEIPGNGIDDDGNGYVDDIYGW-NFV 53
Query: 193 QGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGC 252
+ P+DD GHGTH A NG + G+A + K DG
Sbjct: 54 --NNDNDPMDDNGHGTHVAGIIGAVGNNGIGI--------AGVAWNVKIMPLKFLGADGS 103
Query: 253 -SESRVYAAMDTAIDDGVDVLSLSLG-AASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEG 310
+ S A+D A+D G +++ S G D +A AI I +AGN+G
Sbjct: 104 GTTSDAIKAIDYAVDMGAKIINNSWGGGGPSQALRDAIA----RAIDAGILFVAAAGNDG 159
Query: 311 PNPST-----SSNEAPWILSVGAST 330
N +S + I+SV A+
Sbjct: 160 TNNDKTPTYPASYDLDNIISVAATD 184
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 2e-12
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 482 SSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAA 541
S +S G DI PG +IL++ T + ++GTSM+ P ++GVAA
Sbjct: 168 DGTPASPSSNGGAGVDIAAPGGDILSSP-------TTGGGGYATLSGTSMAAPIVAGVAA 220
Query: 542 LLKSAHPDWSPAAIKSAIMTT 562
LL SA+PD +PA +K+A+++T
Sbjct: 221 LLLSANPDLTPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-12
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 32 TYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCYKNVITGFAAKLT 91
TYIV + A S SW+ S S +LY YK+ GFAAKLT
Sbjct: 1 TYIVKFKDGVSKAAVFS---SHKSWHAS------SKEEAAGASILYSYKHGFNGFAAKLT 51
Query: 92 AEQAKAMETKEGFISAHVEKTLQLH 116
E+A+ + ++ ++LH
Sbjct: 52 EEEAEKLRKHPDVEYVEPDQVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 468 TVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVA 527
+V + ASFSS GP+ + G LKPD++ G I N
Sbjct: 176 SVGAVDANGNKASFSSIGPT--ADGRLKPDVMALGTGIYVI---------NGDGNITYAN 224
Query: 528 GTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTAD 564
GTS SCP ++G+ A L AHP+W+ IK AI+ +A
Sbjct: 225 GTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-11
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 11/66 (16%)
Query: 478 LASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLS 537
+A FS RGP+ G +KPDI PGVNIL A S T+S GTS++ ++
Sbjct: 359 IAIFSGRGPTRD--GRIKPDIAAPGVNILTA---SPGGGYTTRS------GTSVAAAIVA 407
Query: 538 GVAALL 543
G ALL
Sbjct: 408 GACALL 413
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-11
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 361 KQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILM 420
PL+Y G NG+ + C S+++GK+VL RGG +K + + AG G+I+
Sbjct: 6 GTGPLVYVG-NGDDAGGCCPEDLADSDVKGKIVLVRRGGCSFVEKAENAQRAGAAGVIIY 64
Query: 421 NDKLNGYSTL---ADPHLLPAVHVSYAAGESI 449
N+ G +P V +SY GE++
Sbjct: 65 NNDTGGLGGTVGDPSDVTIPVVFISYEDGEAL 96
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 6e-11
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 18/88 (20%)
Query: 477 ELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHL 536
+ ASFS+ G + D+ PG IL+ P + ++GTSM+ PH+
Sbjct: 188 KRASFSNYGKWV--------DVSAPGGGILSTTP---------DGDYAYMSGTSMATPHV 230
Query: 537 SGVAALLKSAHPDWSPAAIKSAIMTTAD 564
+GVAALL S P S + ++ A+ TAD
Sbjct: 231 AGVAALLYSQGP-LSASEVRDALKKTAD 257
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 59/217 (27%), Positives = 84/217 (38%), Gaps = 53/217 (24%)
Query: 141 GVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPP 200
G+ I V+D G H +F+ FK N +++G +F+ S
Sbjct: 1 GITIAVIDAGFPKVHEAFA----------------FKHLFKNLRILGEYDFVDNSNNTNY 44
Query: 201 LDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRV--- 257
DD+ HGT +T AG G VG AP A + + D SE+ V
Sbjct: 45 TDDD-HGTAVLSTMAGY----------TPGVMVGTAPNASYYLARTEDVA--SETPVEED 91
Query: 258 --YAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAI------GSFS--------AIQKEIF 301
AA + A GVD++S SLG + F + G S A K +
Sbjct: 92 NWVAAAEWADSLGVDIISSSLGYTT--FDNPTYSYTYADMDGKTSFISRAANIAASKGML 149
Query: 302 VSCSAGNEGPNPS---TSSNEAPWILSVGASTTDRSI 335
V SAGNEG + +A +LSVGA + +
Sbjct: 150 VVNSAGNEGSTQWKGIGAPADAENVLSVGAVDANGNK 186
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 55/195 (28%), Positives = 78/195 (40%), Gaps = 40/195 (20%)
Query: 142 VIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPL 201
V++ ++DTG+ HP S KL+ NF S +P
Sbjct: 1 VVVAIIDTGVDLNHPDLSG---------------------KPKLVPGWNF--VSNNDPTS 37
Query: 202 DDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAA 260
D +GHGT A AA NG V G+AP A L ++ D G S + A
Sbjct: 38 DIDGHGTACAGVAAAVGNNGLGV--------AGVAPGAKLMPVRIADSLGYAYWSDIAQA 89
Query: 261 MDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQ-----KEIFVSCSAGNEGPNPST 315
+ A D+G DV+S S G S AI +A K V +AGN G + S+
Sbjct: 90 ITWAADNGADVISNSWG-GSDSTESISSAID--NAATYGRNGKGGVVLFAAGNSGRSVSS 146
Query: 316 SSNEAPWILSVGAST 330
P +++V A+
Sbjct: 147 GYAANPSVIAVAATD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 5e-10
Identities = 49/200 (24%), Positives = 79/200 (39%), Gaps = 42/200 (21%)
Query: 403 TKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNAT 462
+ G VV A G ND +G T + + + + + +S N
Sbjct: 173 REAGVVVVVAAG------NDGNSGSGTSKPLATNNPDTGTVGSPATADDVL-TVASAN-- 223
Query: 463 IVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKST 522
+ + +++ FSS GP+ LKPDI PG NI + +T
Sbjct: 224 -----KKVPNPNGGQMSGFSSWGPT--PDLDLKPDITAPGGNIYSTVN---------DNT 267
Query: 523 FNMVAGTSMSCPHLSGVAALLKSA----HPDWSPA----AIKSAIMTTADI--VSLDGKP 572
+ ++GTSM+ PH++G +AL+K +P S +K+ +M TA S D K
Sbjct: 268 YGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSEDTKT 327
Query: 573 IVDQRLLPADMFAVGAGHVN 592
R GAG ++
Sbjct: 328 YYSPRR-------QGAGLID 340
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 49/208 (23%), Positives = 74/208 (35%), Gaps = 40/208 (19%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGE 198
GKG I+GV DTG+ H F D + K++ + +
Sbjct: 6 GKGQIVGVADTGLDTNHCFFYDPNFNKTNLF------------HRKIVRYDSL-----SD 48
Query: 199 PPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVY 258
D +GHGTH A AG + + G+AP A L + D G S
Sbjct: 49 TKDDVDGHGTHVAGIIAGKGND-----SSSISLYKGVAPKAKLYFQDIGDTSGNLSS--P 101
Query: 259 AAMDTAIDDGVDVLSL----SLGAASVPFFEDP-LAIGSFSAIQKEIFVSCSAGNEGPN- 312
++ D + S G+ + A F+ +I SAGN+G +
Sbjct: 102 PDLNKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYNNPDILFVFSAGNDGNDG 161
Query: 313 ------PSTSSNEAPWILSVGASTTDRS 334
P+T+ N +L+VGAS
Sbjct: 162 SNTIGSPATAKN----VLTVGASNNPSV 185
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-09
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 10/102 (9%)
Query: 388 IRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDK---LNGYSTLADPHLLPAVHVSYA 444
++GK+ L +RG +K K AG +G+I+ N+ + G A +P V +S
Sbjct: 46 VKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVF--IPVVFISKE 103
Query: 445 AGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGP 486
GE++KA + S+ + F K + P+LA FSSRGP
Sbjct: 104 DGEALKAALESS----KKLTFNTKKE-KATNPDLADFSSRGP 140
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 143 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 5e-09
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 477 ELASFSSRGPSI--ASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCP 534
+ AS+S+ GP++ ++PG VN + + ST+ + GTSM+ P
Sbjct: 202 QRASYSNYGPAVDVSAPGG----DCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAP 257
Query: 535 HLSGVAALLKSAHPDWSPAAIKSAIMTT 562
H++GVAAL+KS +P +PA I+S + +T
Sbjct: 258 HVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 9e-09
Identities = 42/142 (29%), Positives = 56/142 (39%), Gaps = 32/142 (22%)
Query: 142 VIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPP- 200
V + V+D+GI P HP + K G G TG+
Sbjct: 2 VTVAVIDSGIDPDHPDLKNSISS------YSKNLVPKG-------GYDGKEAGETGDIND 48
Query: 201 -LDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCS---ESR 256
+D GHGT A A A+G G+AP + Y+V F C S
Sbjct: 49 IVDKLGHGTAVAGQIA------------ANGNIKGVAPGIGIVSYRV--FGSCGSAESSW 94
Query: 257 VYAAMDTAIDDGVDVLSLSLGA 278
+ A+ A DDGVDV++LSLG
Sbjct: 95 IIKAIIDAADDGVDVINLSLGG 116
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 55/210 (26%), Positives = 79/210 (37%), Gaps = 56/210 (26%)
Query: 139 GKGVIIGVMDTGITPGHPSF---------------SDEGMPPPPAKWKGKCEFKGAACNN 183
GKGV++G++DTGI HP F + G PPP + G
Sbjct: 3 GKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPG-------GYYGGGEYT 55
Query: 184 KLIGARNFLQGSTGEP-PLDDE-GHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHL 241
+ I + + P DE GHGTH A AAGN N + G+AP A L
Sbjct: 56 EEIINAALASDNPYDIVPSRDENGHGTHVAGIAAGNGDNNPDF--------KGVAPEAEL 107
Query: 242 AIYKV-----------CDFDGCSESRVYAAMDTAIDDGVD-----VLSLSLGAASVP--- 282
+ K+ D E+ + A+ D ++ V+++SLG
Sbjct: 108 IVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINISLGTNFGSHDG 167
Query: 283 --FFEDPLAIGSFSAIQKEIFVSCSAGNEG 310
E I + S ++ V AGNEG
Sbjct: 168 TSLLER--YIDAISRLRGIAVV-VGAGNEG 194
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 479 ASFSSRGP--SIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHL 536
ASFS+ G IA+PG IL+ P + + ++GTSM+ PH+
Sbjct: 199 ASFSNYGRWVDIAAPG---------VGTILSTVPK---LDGDGGGNYEYLSGTSMAAPHV 246
Query: 537 SGVAALLKSAHPD 549
SGVAAL+ S PD
Sbjct: 247 SGVAALVLSKFPD 259
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 50/215 (23%), Positives = 81/215 (37%), Gaps = 46/215 (21%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGE 198
G G+++ +DTG+ HP+ ++ N+
Sbjct: 1 GTGIVVANIDTGVDWTHPALKNKYRGWGGGSADH---------------DYNWFDPVGNT 45
Query: 199 P-PLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRV 257
P P DD GHGTHT T GN DG +G+AP A + D +G +++
Sbjct: 46 PLPYDDNGHGTHTMGTMVGNDG---------DGQQIGVAPGARWIACRALDRNGGNDADY 96
Query: 258 YAAMDTAI------------DDGVDVLSLSLGAAS--VPFFEDPLAIGSFSAIQKEIFVS 303
+ D DV++ S G S + + A+ ++ A IF
Sbjct: 97 LRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQP--AVAAWRAAG--IFPV 152
Query: 304 CSAGNEGPNPSTSSNEA---PWILSVGASTTDRSI 335
+AGN+GP ST + P +VGA+ + +
Sbjct: 153 FAAGNDGPRCSTLNAPPANYPESFAVGATDRNDVL 187
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 44/160 (27%), Positives = 63/160 (39%), Gaps = 30/160 (18%)
Query: 438 AVHVSYAAGESIKAYINSTSSPNAT-IVFKGTVIGKKSTPELASFSSRGPSIASPGILKP 496
V V+ A + P V I + TP +SFS GP +
Sbjct: 151 VVVVAAAGNTGGDGQKTTVVYPAWYPGVLAVGSIDRDGTP--SSFSLPGPWV-------- 200
Query: 497 DIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIK 556
D+ PG NI++ P T + GTS + P +SG AAL++S PD + A ++
Sbjct: 201 DLAAPGENIVSLSPGGDGLATTS--------GTSFAAPFVSGTAALVRSRFPDLTAAQVR 252
Query: 557 SAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSA 596
I TAD + D VG G V+P +A
Sbjct: 253 RRIEATAD---HPARGGRD--------DYVGYGVVDPVAA 281
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.7 bits (133), Expect = 5e-08
Identities = 60/235 (25%), Positives = 87/235 (37%), Gaps = 48/235 (20%)
Query: 134 KDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQ 193
GKGV + V+DTG+ HP + +F+
Sbjct: 136 GAGLTGKGVTVAVIDTGVDASHPDL-----------------------AGSAVAGGDFVD 172
Query: 194 GSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCS 253
G P LDD GHGTH A T A + G+AP A L + KV G S
Sbjct: 173 GDPEPPFLDDNGHGTHVAGTIAAVIFDNGAGV-------AGVAPGAKLLLVKVLGSGGGS 225
Query: 254 E--SRVYAAMDTAIDDG--VDVLSLSLGAASVPFFEDPL-AIGSFSAIQKEIFVSCSAGN 308
S V ++ A + G DV++LSLG + L + +A + + +AGN
Sbjct: 226 GELSDVAEGIEGAANLGGPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGN 285
Query: 309 EGPN--------PSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQP 355
+G N P++ +++VGA VAS N G + P
Sbjct: 286 DGSNASGGDLAYPASYPAPN--VIAVGA-LDLSDTVAS--FSNDGSPTGVDIAAP 335
|
Length = 508 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 8e-08
Identities = 37/128 (28%), Positives = 49/128 (38%), Gaps = 25/128 (19%)
Query: 474 STPELASFSSRGP-SIASP---GILKPDIIGP-GVNILAAWPFSVENKTNTKSTFNMVAG 528
+ SS P I P KPD+ P GVN G
Sbjct: 165 DPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPDGVNGTVDG---------DGDGPPNFFG 215
Query: 529 TSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGA 588
TS + PH +GVAAL+ SA+P +PA I+ A+ +TA P A G+
Sbjct: 216 TSAAAPHAAGVAALVLSANPGLTPADIRDALRSTA-----------LDMGEPGYDNASGS 264
Query: 589 GHVNPSSA 596
G V+ A
Sbjct: 265 GLVDADRA 272
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 15/105 (14%)
Query: 487 SIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSA 546
++A+ + DI PGV+I++A P + S GTSM+ PH++GVAAL A
Sbjct: 204 AVANFSNGEVDIAAPGVDIVSAAPGG---GYRSMS------GTSMATPHVAGVAALWAEA 254
Query: 547 HPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHV 591
P A+ + + + Q D+ G G
Sbjct: 255 LPKAGGRALAALLQ------ARLTAARTTQFAPGLDLPDRGVGLG 293
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 55/195 (28%), Positives = 76/195 (38%), Gaps = 53/195 (27%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
W+ G GV + V DTG+ HP F RN
Sbjct: 1 WQLGYTGAGVKVAVFDTGLAKDHPHF------------------------------RNVK 30
Query: 193 QGS--TGEPPLDDE-GHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDF 249
+ + T E LDD GHGT FV G V + +G AP A + I++V
Sbjct: 31 ERTNWTNEKTLDDGLGHGT---------FVAG--VIASSREQCLGFAPDAEIYIFRVFTN 79
Query: 250 DGCS-ESRVYAAMDTAIDDGVDVLSLSLGAA---SVPFFEDPLAIGSFSAIQKEIFVSCS 305
+ S S A + AI +DVL+LS+G PF + + + I VS +
Sbjct: 80 NQVSYTSWFLDAFNYAILTKIDVLNLSIGGPDFMDKPFVDKVWELTA----NNIIMVS-A 134
Query: 306 AGNEGPNPSTSSNEA 320
GN+GP T +N A
Sbjct: 135 IGNDGPLYGTLNNPA 149
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 52.6 bits (125), Expect = 5e-07
Identities = 55/205 (26%), Positives = 85/205 (41%), Gaps = 18/205 (8%)
Query: 438 AVHVSYAAGES-IKAYINSTSSPNATIVFKGTVIGK-KSTPELASFSSRGPSIASPGILK 495
V + AAG A + P + +G + +ASFS+ G
Sbjct: 276 GVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDLSDTVASFSNDGSPT------G 329
Query: 496 PDIIGPGVNIL-AAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHP-DWSPA 553
DI PGVNIL + ++ T +GTSM+ PH+SGVAAL+ SA+P + +PA
Sbjct: 330 VDIAAPGVNILSLSAVNTLPGDGADYVTL---SGTSMAAPHVSGVAALVLSANPNELTPA 386
Query: 554 AIKSAIMTTADIVSLDG-KPIVDQRLLPADMFAV----GAGHVNPSSANDPGLIYDIQPD 608
+++ I+TTA + L G +V L D A G N + ++ +
Sbjct: 387 QVRNLIVTTAGLTPLSGVDNLVGGGLANLDAAATDVAGGTLPANGTGSSQGAVEAPGTLA 446
Query: 609 DYIPYLCGLNYSDQHVQDIVMINVQ 633
P L G + V V + +
Sbjct: 447 LLTPALGGTVPAAVAVAGTVTVGLG 471
|
Length = 508 |
| >gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 9e-07
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 379 CSPGSLSSN---IRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHL 435
C G+ + ++GK+VL RGG ++K + + AG +I+ N+ + + L
Sbjct: 33 CGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGL 92
Query: 436 ------LPAVHVSYAAGESIKAYINSTSSPNATI 463
+P V +SYA GE++ + + + + +
Sbjct: 93 ESTDPSIPTVGISYADGEALLSLLEAGKTVTVDL 126
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) glutamate carboxypeptidase II (GCPII), vi) yeast aminopeptidase Y, vii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, viii) lactocepin (a cell envelope-associated protease from Lactobacillus paracasei subsp. paracasei NCDO 151), ix) various subtilisin-like proteases such as melon Cucumisin, and x) human TfR (transferrin receptor) 1 and 2. Length = 126 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 478 LASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLS 537
AS+S+ G + D++ PGV I + +GTS + P +
Sbjct: 166 RASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGGYGSFSGTSFASPVAA 217
Query: 538 GVAALLKSAHPDWSPAAIKSAIMTT 562
GVAAL+ SA+P+ +PA ++ + +T
Sbjct: 218 GVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 497 DIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIK 556
D+ PG I + P +N+ T S GTSM+ P +SGVAAL+ S +P+ + +K
Sbjct: 233 DVFAPGERIYSTTP---DNEYETDS------GTSMAAPVVSGVAALIWSYYPNLTAKEVK 283
Query: 557 SAIMTTA 563
I+ +
Sbjct: 284 QIILESG 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 5e-06
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 477 ELASFSSRGPSIASPGILKPDIIGPGVNILAAWP-FSVENKTNTKSTFNMVAGTSMSCPH 535
++ S+SSRGPSIA G KPD+ G A + F++ GTSM+ P
Sbjct: 220 DVVSWSSRGPSIA--GDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPM 277
Query: 536 LSGVAALLKSAHPD------WSPAAIKSAIMTTA 563
+G AAL+ SA + + P +++ +M+TA
Sbjct: 278 TAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 501 PGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIM 560
PG NI + P V+GTS + PH+SG AALL P + ++ ++
Sbjct: 211 PGENIYSTDPDGGNGYGR-------VSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLL 263
Query: 561 TTAD 564
TTA
Sbjct: 264 TTAT 267
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 48/216 (22%), Positives = 71/216 (32%), Gaps = 33/216 (15%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
W+ G G+I+ V+DTG+ HP +G + G + + NF+
Sbjct: 3 WEFGTGGPGIIVAVVDTGVDGTHPDL------------QGNGDGDG---YDPAVNGYNFV 47
Query: 193 QGSTGEPPLDDE--GHGTHTATTAA----GNFVNGANVFGQADGTAVGIAPLAHLAIYKV 246
GHGTH A T A G V I + A
Sbjct: 48 PNVGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIAGAGGVAPGVKIMSIQIFAGRYY 107
Query: 247 CDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPL--AIGSF-----SAIQKE 299
D + + VYAA D+G +L S G + L A F +
Sbjct: 108 VGDDAVAAAIVYAA-----DNGAVILQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDG 162
Query: 300 IFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSI 335
V SAGN + P +++V A T+ +
Sbjct: 163 GIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTNDNK 198
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 498 IIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKS 557
GV+I+A P + G S + PH++G+ ALL S PD +K
Sbjct: 165 FSADGVDIIAPAPHGRYLTVS---------GNSFAAPHVTGMVALLLSEKPDIDANDLKR 215
Query: 558 A 558
Sbjct: 216 L 216
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 482 SSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAA 541
SSRGP+ G L I PG I SV N T S ++ GTSMS P+ G A
Sbjct: 333 SSRGPTA--DGALGVSISAPGGAIA-----SVPNWTLQGS--QLMNGTSMSSPNACGGIA 383
Query: 542 L----LKSAHPDWSPAAIKSAIMTTA 563
L LK+ ++P +++ A+ TA
Sbjct: 384 LLLSGLKAEGIPYTPYSVRRALENTA 409
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 9e-05
Identities = 58/217 (26%), Positives = 83/217 (38%), Gaps = 41/217 (18%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGE 198
G+GV+I ++DTG+ HP G WK K ++K L+ + G
Sbjct: 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLKFDYKA-----YLLPGMDKWGGFYV- 50
Query: 199 PPLDDEGHGTHTATTAAGN---FVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSES 255
D HGT A+ AAG N G+ GIAP A +A K F
Sbjct: 51 IMYDFFSHGTSCASVAAGRGKMEYNLYGYTGKF--LIRGIAPDAKIAAVKALWF----GD 104
Query: 256 RVYAAMDTAIDDG--------------VDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIF 301
+YA + TA D VDV+S S G ++ + + S + +
Sbjct: 105 VIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALV 164
Query: 302 VSC------SAGNEGP--NPSTSSNEAPWILSVGAST 330
+AGN GP T+ A +SVGA+T
Sbjct: 165 TYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAAT 201
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 17/95 (17%)
Query: 478 LASFSSRGPSI----ASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
+A FSSRG + G +KPDI+ G + + + K ++ ++GTS++
Sbjct: 166 IARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGS-----KLKGGCRA----LSGTSVAS 216
Query: 534 PHLSGVAALLKSAHPD----WSPAAIKSAIMTTAD 564
P ++G ALL S P+ +PA++K A++ +A
Sbjct: 217 PVVAGAVALLLSTVPEKRDLINPASMKQALIESAT 251
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 44/153 (28%), Positives = 62/153 (40%), Gaps = 43/153 (28%)
Query: 206 HGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDF------DGCSESRVYA 259
HGTH A AA +F + G+AP A + K+ D G + R
Sbjct: 187 HGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVR--- 235
Query: 260 AMDTAIDDGVDVLSLSLG-AASVPFFEDPLAIGSFSAIQKE-------IFVSCSAGNEGP 311
AM AI+ D++++S G A P G + E IFVS SAGN GP
Sbjct: 236 AMIAAIETKCDLINMSYGEATHWPNS------GRIIELMNEAVNKHGVIFVS-SAGNNGP 288
Query: 312 NPST-------SSNEAPWILSVGASTTDRSIVA 337
ST +S+ ++ VGA + + A
Sbjct: 289 ALSTVGAPGGTTSS----VIGVGAYVSPEMMAA 317
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 53/221 (23%), Positives = 76/221 (34%), Gaps = 66/221 (29%)
Query: 143 IIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLD 202
I+ V+D+GI GHP PA A + L D
Sbjct: 2 IVCVLDSGINRGHP-------LLAPAL------------------AEDDLDSDEPGWTAD 36
Query: 203 DEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAH-LAIYKVCDFDGCSESRVY-AA 260
D GHGT A A ++G G+ L +V +G ++ +Y
Sbjct: 37 DLGHGTAVAGLA---------LYGDLTLPGNGLPRPGCRLESVRVLPPNGENDPELYGDI 87
Query: 261 MDTAID-------DGVDVLSLSLGAASVPFFEDPLAIGSFSA----IQKE---IFVSCSA 306
AI D V V +LSLG+ P + S++A + E +FV SA
Sbjct: 88 TLRAIRRAVIQNPDIVRVFNLSLGSPL-PIDDGR--PSSWAAALDQLAAEYDVLFV-VSA 143
Query: 307 GNEGPNPSTSSNEAPWI------------LSVGASTTDRSI 335
GN G + + L+VGA T+D I
Sbjct: 144 GNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDI 184
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|239047 cd02132, PA_GO-like, PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 379 CSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPH---- 434
CSP +S + G + L ERG T+K ++ + G ++++ND+ Y + + +
Sbjct: 51 CSP--STSKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSL 108
Query: 435 --LLPAVHVSYAAGESIKAYINSTSS 458
+P V + +AG+++ ++
Sbjct: 109 NISIPVVMIPQSAGDALNKSLDQGKK 134
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 139 |
| >gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease, PatA/PatG family | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 22/90 (24%)
Query: 481 FSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVA 540
FS+ G + + GIL PG NIL A P +T S GTS + P ++GVA
Sbjct: 126 FSNWGEAYQAQGIL-----APGENILGAQP---GGETVRLS------GTSFATPVVTGVA 171
Query: 541 ALLKSAH------PDWSPAAIKSAIMTTAD 564
ALL S PD P A+++A++ +A
Sbjct: 172 ALLLSLQLQQGETPD--PQAVRTALLNSAI 199
|
This model describes a protease domain associated with the maturation of various members of the cyanobactin family of ribosomally produced, heavily modified bioactive metabolites. Members include the PatA protein and C-terminal domain of the PatG protein of Prochloron didemni, TenA and a region of TenG from Nostoc spongiaeforme var. tenue, etc. Length = 602 |
| >gnl|CDD|173789 cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 49/215 (22%), Positives = 72/215 (33%), Gaps = 50/215 (23%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
W+ GKGV + V+D G+ HP + K + +F
Sbjct: 32 WEQGITGKGVTVAVVDDGLEITHP------------------DLKDNYDPE---ASYDFN 70
Query: 193 QGSTG-EPPLDDE-GHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFD 250
P DD+ HGT A A G N VG+AP A L ++ D D
Sbjct: 71 DNDPDPTPRYDDDNSHGTRCAGEIAA---VGNNGIC-----GVGVAPGAKLGGIRMLDGD 122
Query: 251 GCSESRVYAAMDTAIDDGVDVLSLSLGAAS-VPFFEDPLAIGSFSAIQK----------E 299
+ D +D+ S S G + P + A++
Sbjct: 123 VTDVVEAESLGLNP--DYIDIYSNSWGPDDDGKTVDGPGPLAQR-ALENGVTNGRNGKGS 179
Query: 300 IFVSCSAGNEGPNPSTSS----NEAPWILSVGAST 330
IFV +AGN G + N + + +SV A T
Sbjct: 180 IFVW-AAGNGGNLGDNCNCDGYNNSIYTISVSAVT 213
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. Length = 297 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 50/207 (24%), Positives = 77/207 (37%), Gaps = 52/207 (25%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGE 198
G GV + V+DTG+ HP +P G +F+ G
Sbjct: 12 GAGVTVAVIDTGVDD-HPRLPGLVLP-------GG----------------DFVGSGDGT 47
Query: 199 PPLDDEGHGTHTATTAAGNFVNGANVFGQADGT-AVGIAPLAHLAIYKVCD--FDGCSES 255
D +GHGT A AG +G G+AP A + + F+ +
Sbjct: 48 --DDCDGHGTLVAGIIAG---------RPGEGDGFSGVAPDARILPIRQTSAAFEPDEGT 96
Query: 256 RVYAAMDT-------AIDDGVDVLSLSLGA---ASVPFFEDPLAIGSFSAIQKEIFVSCS 305
+ T A D G DV+++SL A A + L A+ K + V +
Sbjct: 97 SGVGDLGTLAKAIRRAADLGADVINISLVACLPAGSGADDPELGAAVRYALDKGVVVVAA 156
Query: 306 AGNEGPNPSTSSNEAP-W---ILSVGA 328
AGN G + ++ P W +L+VG+
Sbjct: 157 AGNTGGDGQKTTVVYPAWYPGVLAVGS 183
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 17/83 (20%)
Query: 482 SSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAA 541
++RG + D PGV++ A P + V+GTS + P ++ A
Sbjct: 161 ANRGAHV--------DFAAPGVDVWVAAP---------GGGYRYVSGTSFAAPFVTAALA 203
Query: 542 LLKSAHPDWSPAAIKSAIMTTAD 564
LL A P A T D
Sbjct: 204 LLLQASPLAPDDARARLAATAKD 226
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 477 ELASFSSRGPS---IASPG--ILKPDIIGPGVNILAAWPFSVENKTNTKST--FNMVAGT 529
L+SFS+ G S +A+PG L D G + + E T + + GT
Sbjct: 202 NLSSFSNYGNSRIDLAAPGGDFLLLDQYGKE-KWVNNGLMTKEQILTTAPEGGYAYMYGT 260
Query: 530 SMSCPHLSGVAALLKSAHP 548
S++ P +SG AL+ +P
Sbjct: 261 SLAAPKVSGALALIIDKNP 279
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 742 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.98 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.92 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.86 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.72 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.2 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.17 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.92 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.66 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.61 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.6 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.57 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.57 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.54 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.53 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.51 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.45 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.45 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.43 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.43 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.38 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.3 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.28 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.26 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.2 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 98.11 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 97.74 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 97.15 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 96.89 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 96.06 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 95.93 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 95.7 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 95.57 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 95.46 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 94.82 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 94.5 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 94.21 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 92.88 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 92.06 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 92.02 | |
| PF00345 | 122 | PapD_N: Pili and flagellar-assembly chaperone, Pap | 91.85 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 91.05 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 88.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 86.66 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 85.43 | |
| PF00635 | 109 | Motile_Sperm: MSP (Major sperm protein) domain; In | 80.36 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=438.51 Aligned_cols=289 Identities=57% Similarity=0.883 Sum_probs=250.1
Q ss_pred eccccCCCCCccCccCCCC--CccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccc----cCcccc
Q 048043 113 LQLHTTHTPNFLGLHQNSG--FWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAA----CNNKLI 186 (742)
Q Consensus 113 ~~~~~~~s~~~~g~~~~~~--~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f----~n~ki~ 186 (742)
+++++++++.++++....+ +|.++++|+||+|||||||||++||+|.++...+++..|++.|..+..+ +++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 4678888999999887444 4778999999999999999999999999999999999999999988776 899999
Q ss_pred ceeecCCCCC----------CCCCCCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHH
Q 048043 187 GARNFLQGST----------GEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSES 255 (742)
Q Consensus 187 ~~~~~~~~~~----------~~~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~ 255 (742)
+.++|..+.+ ..++.|..||||||||||||+...+....+...+.+.||||+|+|+.+|+++..+ +..+
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~ 160 (307)
T cd04852 81 GARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGS 160 (307)
T ss_pred EEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHH
Confidence 9999987542 3456788999999999999997766555566667789999999999999998844 8889
Q ss_pred HHHHHHHHhhhCCCcEEEEccCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCccee
Q 048043 256 RVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSI 335 (742)
Q Consensus 256 ~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~ 335 (742)
++++||++|++++++|||||||........+.+..++..+.++|+++|+||||+|+.....++..||+++||+.+
T Consensus 161 ~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~----- 235 (307)
T cd04852 161 DILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST----- 235 (307)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc-----
Confidence 999999999999999999999987645567788888889999999999999999988888888999999999830
Q ss_pred EEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCe
Q 048043 336 VASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGI 415 (742)
Q Consensus 336 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~ 415 (742)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcc
Q 048043 416 GMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILK 495 (742)
Q Consensus 416 ~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~K 495 (742)
+|
T Consensus 236 ------------------------------------------------------------------------------~~ 237 (307)
T cd04852 236 ------------------------------------------------------------------------------LK 237 (307)
T ss_pred ------------------------------------------------------------------------------Cc
Confidence 46
Q ss_pred cceEecCCcEEeccCCCc-cCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 048043 496 PDIIGPGVNILAAWPFSV-ENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 496 PDI~APG~~I~sa~~~~~-~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 564 (742)
|||+|||.+|++++.... .........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 238 ~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 238 PDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred cceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 799999999999986422 112233468999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-51 Score=450.52 Aligned_cols=300 Identities=20% Similarity=0.222 Sum_probs=217.7
Q ss_pred CCccCccC--CCCCcc--CCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCC--ccccccccCccccCccccceeecCCC
Q 048043 121 PNFLGLHQ--NSGFWK--DSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPA--KWKGKCEFKGAACNNKLIGARNFLQG 194 (742)
Q Consensus 121 ~~~~g~~~--~~~~~~--~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~--~~~g~~~~g~~f~n~ki~~~~~~~~~ 194 (742)
...|+++. +.++|+ .+.+|+||+|||||||||++||||.++-...... ..++....+.++ -.. +.+++|.++
T Consensus 293 ~~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~GrdgiDdD~nG~-vdd-~~G~nfVd~ 370 (639)
T PTZ00262 293 NLQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELHGRKGIDDDNNGN-VDD-EYGANFVNN 370 (639)
T ss_pred ccCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccccccCccccccccCCc-ccc-cccccccCC
Confidence 34566664 445665 4678999999999999999999998642110000 000100000000 001 223556654
Q ss_pred CCCCCCCCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEE
Q 048043 195 STGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLS 273 (742)
Q Consensus 195 ~~~~~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn 273 (742)
. ..+.|..||||||||||||...+ ...+.||||+|+|+++|+++..| +..+++++||+||+++|++|||
T Consensus 371 ~--~~P~D~~GHGTHVAGIIAA~gnN--------~~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VIN 440 (639)
T PTZ00262 371 D--GGPMDDNYHGTHVSGIISAIGNN--------NIGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMIN 440 (639)
T ss_pred C--CCCCCCCCcchHHHHHHhccccC--------CCceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEE
Confidence 3 56789999999999999987422 22357999999999999998877 7889999999999999999999
Q ss_pred EccCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCC--------------CCC----CCCceEEecccCCccee
Q 048043 274 LSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPST--------------SSN----EAPWILSVGASTTDRSI 335 (742)
Q Consensus 274 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~----~~p~vitVga~~~~~~~ 335 (742)
||||+.. +...+..++.+|.++|+++|+||||+|..... ++. ..+++|+|||...+.
T Consensus 441 mSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~-- 515 (639)
T PTZ00262 441 GSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK-- 515 (639)
T ss_pred eccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC--
Confidence 9999762 34567788889999999999999999865321 121 235666666632110
Q ss_pred EEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCe
Q 048043 336 VASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGI 415 (742)
Q Consensus 336 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~ 415 (742)
T Consensus 516 -------------------------------------------------------------------------------- 515 (639)
T PTZ00262 516 -------------------------------------------------------------------------------- 515 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcc
Q 048043 416 GMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILK 495 (742)
Q Consensus 416 ~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~K 495 (742)
.....++.||+||.. +
T Consensus 516 ---------------------------------------------------------~~~~s~s~~Snyg~~-------~ 531 (639)
T PTZ00262 516 ---------------------------------------------------------NNQYSLSPNSFYSAK-------Y 531 (639)
T ss_pred ---------------------------------------------------------CCcccccccccCCCC-------c
Confidence 000124456677632 3
Q ss_pred cceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCcccc
Q 048043 496 PDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVD 575 (742)
Q Consensus 496 PDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~ 575 (742)
+||+|||++|+|+++. +.|..++|||||||||||+||||++++|+|++.+|+++|++||.++...
T Consensus 532 VDIaAPG~dI~St~p~---------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~------ 596 (639)
T PTZ00262 532 CQLAAPGTNIYSTFPK---------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL------ 596 (639)
T ss_pred ceEEeCCCCeeeccCC---------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC------
Confidence 4999999999999987 7899999999999999999999999999999999999999999876321
Q ss_pred CCCCCCCCCccc-ccccCcCCcCCCCccc
Q 048043 576 QRLLPADMFAVG-AGHVNPSSANDPGLIY 603 (742)
Q Consensus 576 ~~~~~~~~~~~G-~G~vd~~~Al~~~lv~ 603 (742)
+..+| +|+||+++||+.++-+
T Consensus 597 -------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 597 -------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred -------CCccccCcEEcHHHHHHHHHhc
Confidence 12233 3899999999876644
|
|
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-49 Score=408.60 Aligned_cols=242 Identities=29% Similarity=0.461 Sum_probs=200.2
Q ss_pred ccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhh
Q 048043 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTAT 212 (742)
Q Consensus 133 ~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAG 212 (742)
|+++++|+||+|||||||||.+||+|.+. ....+|... ....|..||||||||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~------------------------~~~~~~~~~---~~~~d~~gHGT~VAG 53 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV------------------------KERTNWTNE---KTLDDGLGHGTFVAG 53 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc------------------------ccccccCCC---CCCCCCCCcHHHHHH
Confidence 89999999999999999999999999742 001122222 345678899999999
Q ss_pred hhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCHHHHH
Q 048043 213 TAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIG 291 (742)
Q Consensus 213 iiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~a 291 (742)
||+|+.. .+.||||+|+|+.+|++.+.+ ...++++++++||++++++|||||||... +...++..+
T Consensus 54 iIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~--~~~~~~~~~ 120 (255)
T cd07479 54 VIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD--FMDKPFVDK 120 (255)
T ss_pred HHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC--CCCcHHHHH
Confidence 9998731 137999999999999998876 66778999999999999999999999863 334567777
Q ss_pred HHHhhcCCcEEEEecCCCCCCCC--CCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecC
Q 048043 292 SFSAIQKEIFVSCSAGNEGPNPS--TSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPG 369 (742)
Q Consensus 292 ~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (742)
+.++.++|++||+||||+|+... ..+...+++|+||+..
T Consensus 121 ~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~--------------------------------------- 161 (255)
T cd07479 121 VWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID--------------------------------------- 161 (255)
T ss_pred HHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec---------------------------------------
Confidence 77888999999999999997543 3466778899998831
Q ss_pred CCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHH
Q 048043 370 ANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESI 449 (742)
Q Consensus 370 ~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l 449 (742)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCC----CCCCCcccceEecCCcEEeccCCCccCCCCCccccee
Q 048043 450 KAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSI----ASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNM 525 (742)
Q Consensus 450 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~----~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~ 525 (742)
..+.++.|||+|++. ...+++||||+|||.+|+++... +.|..
T Consensus 162 ------------------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~---------~~~~~ 208 (255)
T cd07479 162 ------------------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK---------GGCRA 208 (255)
T ss_pred ------------------------cCCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC---------CCeEE
Confidence 123678899999753 12578899999999999988765 67899
Q ss_pred eccccchhHHHHHHHHHHHhhCC----CCCHHHHHHHHHcccccc
Q 048043 526 VAGTSMSCPHLSGVAALLKSAHP----DWSPAAIKSAIMTTADIV 566 (742)
Q Consensus 526 ~sGTSmAaP~VAG~aALl~q~~p----~~s~~~ik~~L~~TA~~~ 566 (742)
++|||||||||||++|||+|++| .++|.+||++|++||+++
T Consensus 209 ~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 209 LSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred eccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 99999999999999999999998 799999999999999986
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=412.50 Aligned_cols=270 Identities=26% Similarity=0.282 Sum_probs=204.9
Q ss_pred CCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhc
Q 048043 136 SNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAA 215 (742)
Q Consensus 136 ~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiia 215 (742)
|++|+||+|||||||||..||++.+-..+.++..+ .+... .....|..+|||||||||+
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~-------------------~~~~~--~~~~~d~~gHGT~vAgii~ 59 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNV-------------------NVLGD--LDGGSGGGDEGRAMLEIIH 59 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcce-------------------eeccc--cCCCCCCCchHHHHHHHHh
Confidence 57999999999999999998865432111111111 11111 1345678899999999995
Q ss_pred ccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhhCCCcEEEEccCCCCCCC-CCCHHHHHHHH
Q 048043 216 GNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVPF-FEDPLAIGSFS 294 (742)
Q Consensus 216 G~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~-~~~~~~~a~~~ 294 (742)
||||+|+|+.+|+. ...+++++||+|++++|++|||||||....+. ....+..++.+
T Consensus 60 ------------------GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~ai~~ 117 (275)
T cd05562 60 ------------------DIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVDE 117 (275)
T ss_pred ------------------ccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHHHHH
Confidence 99999999998874 34788999999999999999999999865443 34467778888
Q ss_pred hhcC-CcEEEEecCCCCCCCC-CCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCC
Q 048043 295 AIQK-EIFVSCSAGNEGPNPS-TSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANG 372 (742)
Q Consensus 295 a~~~-Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (742)
+.++ |+++|+||||+|.... ..++..|++|+|||...........
T Consensus 118 a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s--------------------------------- 164 (275)
T cd05562 118 VVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS--------------------------------- 164 (275)
T ss_pred HHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc---------------------------------
Confidence 8887 9999999999998643 4468899999999964332110000
Q ss_pred CCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHH
Q 048043 373 NVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAY 452 (742)
Q Consensus 373 ~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 452 (742)
|. +
T Consensus 165 ------~~---------------------------------------------~-------------------------- 167 (275)
T cd05562 165 ------DP---------------------------------------------A-------------------------- 167 (275)
T ss_pred ------cc---------------------------------------------c--------------------------
Confidence 00 0
Q ss_pred HhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCC-cEEeccCCCccCCCCCcccceeeccccc
Q 048043 453 INSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGV-NILAAWPFSVENKTNTKSTFNMVAGTSM 531 (742)
Q Consensus 453 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~-~I~sa~~~~~~~~~~~~~~y~~~sGTSm 531 (742)
. .......+.|+++||+. +++.||||+|||+ ++.+.+.. +.|..++||||
T Consensus 168 ----~--------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~---------~~~~~~sGTS~ 218 (275)
T cd05562 168 ----P--------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG---------DGPPNFFGTSA 218 (275)
T ss_pred ----c--------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC---------CceeecccchH
Confidence 0 00011345678889987 5789999999975 44555544 68999999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCcCC
Q 048043 532 SCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSAND 598 (742)
Q Consensus 532 AaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 598 (742)
|||||||++|||+|++|+|++++||++|++||+++.. +..+..||||+||+.+||+
T Consensus 219 AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~-----------~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 219 AAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE-----------PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC-----------CCCCCCcCcCcccHHHHhh
Confidence 9999999999999999999999999999999998742 3456789999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-48 Score=420.82 Aligned_cols=310 Identities=28% Similarity=0.371 Sum_probs=236.7
Q ss_pred CCccCCC-CCCccEEEEEcccCCCCCCCCCCCCCCCCCC-----ccccccccCcc-ccCccccceeecCCCCCCCC-CCC
Q 048043 131 GFWKDSN-LGKGVIIGVMDTGITPGHPSFSDEGMPPPPA-----KWKGKCEFKGA-ACNNKLIGARNFLQGSTGEP-PLD 202 (742)
Q Consensus 131 ~~~~~~~-~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~-----~~~g~~~~g~~-f~n~ki~~~~~~~~~~~~~~-~~d 202 (742)
++|+++. +|+||+|||||||||++||+|.+....+... .++..+..+.+ |++.+++..++|.+..+... ..+
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILDEDD 80 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCCCCC
Confidence 3788887 9999999999999999999999764443211 22222222222 37788888889887753333 457
Q ss_pred CCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEecc--CC-CCHHHHHHHHHHhhhCCCcEEEEccCCC
Q 048043 203 DEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDF--DG-CSESRVYAAMDTAIDDGVDVLSLSLGAA 279 (742)
Q Consensus 203 ~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~--~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~ 279 (742)
..+|||||||||+|...+.. ....+.||||+|+|+.+|++.. .+ .....++++++++++++++|||||||..
T Consensus 81 ~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~ 155 (346)
T cd07475 81 GSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGST 155 (346)
T ss_pred CCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 89999999999999854321 1234689999999999999973 33 7778899999999999999999999987
Q ss_pred CCC-CCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCCC----------------CCCCCceEEecccCCcceeEEEEEeC
Q 048043 280 SVP-FFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTS----------------SNEAPWILSVGASTTDRSIVASVELG 342 (742)
Q Consensus 280 ~~~-~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~----------------~~~~p~vitVga~~~~~~~~~~~~~~ 342 (742)
... .....+..++.++.++|+++|+||||+|...... +...+++|+||+...
T Consensus 156 ~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~----------- 224 (346)
T cd07475 156 AGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANK----------- 224 (346)
T ss_pred CCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeeccc-----------
Confidence 532 4556777888889999999999999998654321 223445555555310
Q ss_pred CCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEecc
Q 048043 343 NQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMND 422 (742)
Q Consensus 343 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~ 422 (742)
T Consensus 225 -------------------------------------------------------------------------------- 224 (346)
T cd07475 225 -------------------------------------------------------------------------------- 224 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecC
Q 048043 423 KLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPG 502 (742)
Q Consensus 423 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG 502 (742)
.......+.++.||+|||+. ..++||||+|||
T Consensus 225 ----------------------------------------------~~~~~~~~~~~~~S~~G~~~--~~~~~pdi~apG 256 (346)
T cd07475 225 ----------------------------------------------KVPNPNGGQMSGFSSWGPTP--DLDLKPDITAPG 256 (346)
T ss_pred ----------------------------------------------ccCCCCCCccCCCcCCCCCc--ccCcCCeEEeCC
Confidence 00012335788999999998 679999999999
Q ss_pred CcEEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhh----CCCCCHHH----HHHHHHcccccccCCCCccc
Q 048043 503 VNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSA----HPDWSPAA----IKSAIMTTADIVSLDGKPIV 574 (742)
Q Consensus 503 ~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~~s~~~----ik~~L~~TA~~~~~~g~~~~ 574 (742)
.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++||.+....
T Consensus 257 ~~i~s~~~~---------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~----- 322 (346)
T cd07475 257 GNIYSTVND---------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDS----- 322 (346)
T ss_pred CCeEEecCC---------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCccccc-----
Confidence 999998876 78999999999999999999999997 78999876 788999999853211
Q ss_pred cCCCCCCCCCcccccccCcCCcCC
Q 048043 575 DQRLLPADMFAVGAGHVNPSSAND 598 (742)
Q Consensus 575 ~~~~~~~~~~~~G~G~vd~~~Al~ 598 (742)
.....++.+.++|+|+||+.+||+
T Consensus 323 ~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 323 EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred CCCCccCCccccCcchhcHHHhhC
Confidence 112456777889999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=431.17 Aligned_cols=403 Identities=25% Similarity=0.258 Sum_probs=247.6
Q ss_pred CCCCccEEEEEcccCCCCCCCCCC-CCCCCCCCccccccccCccccCccccceeecCC--------C---CCCCCCCCCC
Q 048043 137 NLGKGVIIGVMDTGITPGHPSFSD-EGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQ--------G---STGEPPLDDE 204 (742)
Q Consensus 137 ~~G~gV~VaVIDtGid~~Hp~f~~-~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~--------~---~~~~~~~d~~ 204 (742)
++|+||+|||||||||+.||+|++ ++.+|+...|++..+.+..- ....+...+.. . .+.....|+.
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~~ 78 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP--GGYYGGGEYTEEIINAALASDNPYDIVPSRDEN 78 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC--ccccCceEEeHHHHHHHHhcCCccccCcCCCCC
Confidence 489999999999999999999994 67889999999988754321 11111111111 0 1123457899
Q ss_pred CCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-----------CCHHHHHHHHHHhhhC-----C
Q 048043 205 GHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-----------CSESRVYAAMDTAIDD-----G 268 (742)
Q Consensus 205 gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-----------~~~~~i~~ai~~a~~~-----g 268 (742)
||||||||||||+..+ ...+.||||+|+|+++|++...+ +..++++.||+|+++. .
T Consensus 79 GHGThvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~ 150 (455)
T cd07478 79 GHGTHVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNK 150 (455)
T ss_pred CchHHHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999998532 23358999999999999998765 4678999999999875 4
Q ss_pred CcEEEEccCCCCC-CCCCCHHHHHHHHhhcC-CcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCee
Q 048043 269 VDVLSLSLGAASV-PFFEDPLAIGSFSAIQK-EIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAV 346 (742)
Q Consensus 269 ~~VIn~SlG~~~~-~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~ 346 (742)
+.|||||||.... ....+.++.++..+..+ |++||+||||+|....+..+.. . .........+.++.++.
T Consensus 151 p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~----~----~~~~~~~ie~~v~~~~~ 222 (455)
T cd07478 151 PLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGI----V----PNGETKTVELNVGEGEK 222 (455)
T ss_pred CeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeee----c----cCCceEEEEEEECCCCc
Confidence 6799999998753 34566788787777766 9999999999998665544210 0 00011122333333333
Q ss_pred EeeeeccCCCCCCCCceeEEecCCCCCCC--CCCcCCCC--CC-CCccceEEEeecCCcchh--h--hhHHHhhcCCeEE
Q 048043 347 YDGEALFQPKDFPSKQFPLIYPGANGNVS--SAQCSPGS--LS-SNIRGKLVLCERGGGERT--K--KGQVVKDAGGIGM 417 (742)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~--~~-~~~~g~iv~~~~g~~~~~--~--~~~~~~~~g~~~~ 417 (742)
-....+|...+ ..+.+......+... ...-.... .. .....++.+..+...... + ..+.-....+.+.
T Consensus 223 ~~~~eiW~~~~---d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~~~~~~GiW~ 299 (455)
T cd07478 223 GFNLEIWGDFP---DRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKNIKPGIWK 299 (455)
T ss_pred ceEEEEecCCC---CEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEEccCCCccceE
Confidence 22233333221 122222222111100 00000000 00 001112222211111100 0 0000112233444
Q ss_pred EEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEecee-----Eec-c-cCCCccccccCCCCCCCC
Q 048043 418 ILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGT-----VIG-K-KSTPELASFSSRGPSIAS 490 (742)
Q Consensus 418 i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~-----~~~-~-~~~~~~a~fSs~Gp~~~~ 490 (742)
|.+........ .-..|+|.-.+...+..++ ..++..+++.+++ .++ . ...+.++.||||||+.
T Consensus 300 i~~~~~~~~~g--~~~~Wlp~~~~~~~~t~f~------~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~-- 369 (455)
T cd07478 300 IRLTGVSITDG--RFDAWLPSRGLLSENTRFL------EPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTR-- 369 (455)
T ss_pred EEEEeccCCCc--eEEEEecCcCcCCCCCEee------cCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCC--
Confidence 43332211000 0123455443333222111 1233445555533 111 1 2345699999999998
Q ss_pred CCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhC------CCCCHHHHHHHHHcccc
Q 048043 491 PGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAH------PDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 491 ~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------p~~s~~~ik~~L~~TA~ 564 (742)
++++||||+|||++|+++.+. +.|..++|||||||||||++|||+|.+ |.+++++||++|++||+
T Consensus 370 ~~~~kpdi~APG~~i~s~~~~---------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~ 440 (455)
T cd07478 370 DGRIKPDIAAPGVNILTASPG---------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGAR 440 (455)
T ss_pred CCCcCceEEecCCCEEEeecC---------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCc
Confidence 689999999999999999987 789999999999999999999999875 56799999999999999
Q ss_pred cccCCCCccccCCCCCCCCCccccc
Q 048043 565 IVSLDGKPIVDQRLLPADMFAVGAG 589 (742)
Q Consensus 565 ~~~~~g~~~~~~~~~~~~~~~~G~G 589 (742)
++.. ..+++.+||||
T Consensus 441 ~~~~----------~~~pn~~~GyG 455 (455)
T cd07478 441 RRPG----------DEYPNPEWGYG 455 (455)
T ss_pred cCCC----------CCCCCCCCCCC
Confidence 8742 34678899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=409.63 Aligned_cols=285 Identities=29% Similarity=0.330 Sum_probs=191.0
Q ss_pred CCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhcccc
Q 048043 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNF 218 (742)
Q Consensus 139 G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~~ 218 (742)
|+||+|||||||||.+||+|.++... .|+..++ +...+....++..+. ...+.|.+||||||||||||+.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~~d-----~~~~~~~g~d~~~~~-~~~~~D~~gHGThvAGiiag~~ 70 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLKFD-----YKAYLLPGMDKWGGF-YVIMYDFFSHGTSCASVAAGRG 70 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----CcccccC-----cCCCccCCcCCCCCc-cCCCCCccccchhHHHHHhccC
Confidence 89999999999999999999754211 1111110 011122222332221 1246789999999999999985
Q ss_pred cCCCccccc-CCcceeeecCcceEEEEEEeccCC-CCHHHHHH-------HHHHh--hhCCCcEEEEccCCCCCCCC---
Q 048043 219 VNGANVFGQ-ADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYA-------AMDTA--IDDGVDVLSLSLGAASVPFF--- 284 (742)
Q Consensus 219 ~~~~~~~g~-~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~-------ai~~a--~~~g~~VIn~SlG~~~~~~~--- 284 (742)
....+..++ ....+.||||+|+|+.+|++...+ .....+.+ +++|. .+++++|||||||.....+.
T Consensus 71 ~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~~~ 150 (311)
T cd07497 71 KMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYA 150 (311)
T ss_pred cccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCccccc
Confidence 322221111 123468999999999999997543 32222332 34444 36799999999998642211
Q ss_pred --CCHHHHHHHH-hhcCCcEEEEecCCCCCCCC--CCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCC
Q 048043 285 --EDPLAIGSFS-AIQKEIFVSCSAGNEGPNPS--TSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFP 359 (742)
Q Consensus 285 --~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 359 (742)
.+..+..... +.++|+++|+||||+|+... ..++..+++|+|||++.....+.
T Consensus 151 ~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~---------------------- 208 (311)
T cd07497 151 PGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF---------------------- 208 (311)
T ss_pred cCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch----------------------
Confidence 1223332222 24899999999999998643 45678899999999642210000
Q ss_pred CCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEE
Q 048043 360 SKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAV 439 (742)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~ 439 (742)
+...
T Consensus 209 ---~~~~------------------------------------------------------------------------- 212 (311)
T cd07497 209 ---YLFG------------------------------------------------------------------------- 212 (311)
T ss_pred ---hhhc-------------------------------------------------------------------------
Confidence 0000
Q ss_pred EEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCcc-CCCC
Q 048043 440 HVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVE-NKTN 518 (742)
Q Consensus 440 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~-~~~~ 518 (742)
......+.++.||||||+. ++++||||+|||++|+++.+.... ....
T Consensus 213 ------------------------------~~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~~~~ 260 (311)
T cd07497 213 ------------------------------YLPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGGALD 260 (311)
T ss_pred ------------------------------cccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCcccC
Confidence 0012235789999999998 689999999999999998765321 1111
Q ss_pred CcccceeeccccchhHHHHHHHHHHHhhCC------CCCHHHHHHHHHccc
Q 048043 519 TKSTFNMVAGTSMSCPHLSGVAALLKSAHP------DWSPAAIKSAIMTTA 563 (742)
Q Consensus 519 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------~~s~~~ik~~L~~TA 563 (742)
....|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 261 ~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 261 GNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 224799999999999999999999999886 589999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-47 Score=404.84 Aligned_cols=287 Identities=33% Similarity=0.469 Sum_probs=226.8
Q ss_pred CCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCC--------CCCCCC
Q 048043 130 SGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGS--------TGEPPL 201 (742)
Q Consensus 130 ~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~--------~~~~~~ 201 (742)
+.+|+.+++|+||+|||||+|||++||+|.++-.+. .++.+.++|..+. ....+.
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~~-----------------~~~~~~~d~~~~~~~~~~~~~~~~~~~ 65 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGPG-----------------CKVAGGYDFVGDDYDGTNPPVPDDDPM 65 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCCC-----------------ceeccccccCCcccccccCCCCCCCCC
Confidence 468999999999999999999999999998642111 1111222222110 123556
Q ss_pred CCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCC
Q 048043 202 DDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAAS 280 (742)
Q Consensus 202 d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~ 280 (742)
|..+|||||||||+|...+ ..+.||||+|+|+.+|++...+ ...+.+++++++|++++++|||||||...
T Consensus 66 d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~ 136 (312)
T cd07489 66 DCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS 136 (312)
T ss_pred CCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC
Confidence 7799999999999988532 2358999999999999998766 67778999999999999999999999864
Q ss_pred CCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCC---CCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCC
Q 048043 281 VPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPS---TSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKD 357 (742)
Q Consensus 281 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 357 (742)
. +....+...+.++.++|+++|+||||+|.... ..+...+++|+||+..
T Consensus 137 ~-~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~--------------------------- 188 (312)
T cd07489 137 G-WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD--------------------------- 188 (312)
T ss_pred C-CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec---------------------------
Confidence 3 33467777788889999999999999987643 3356678888888721
Q ss_pred CCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCcccc
Q 048043 358 FPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLP 437 (742)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p 437 (742)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCC
Q 048043 438 AVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKT 517 (742)
Q Consensus 438 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~ 517 (742)
+.||+|||+. +.+.||||+|||++++++++...
T Consensus 189 -----------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~---- 221 (312)
T cd07489 189 -----------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG---- 221 (312)
T ss_pred -----------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC----
Confidence 4689999998 46899999999999999988732
Q ss_pred CCcccceeeccccchhHHHHHHHHHHHhhC-CCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCc
Q 048043 518 NTKSTFNMVAGTSMSCPHLSGVAALLKSAH-PDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSA 596 (742)
Q Consensus 518 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A 596 (742)
+.|..++|||||||+|||++||++|++ |.+++.+||++|++||.++...+..... ...++..++|+|+||+++|
T Consensus 222 ---~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~--~~~~~~~~~G~G~vn~~~a 296 (312)
T cd07489 222 ---GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL--PDLAPVAQQGAGLVNAYKA 296 (312)
T ss_pred ---CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc--cCCCCHhhcCcceeeHHHH
Confidence 459999999999999999999999999 9999999999999999987544321111 1135678999999999999
Q ss_pred CCCCcc
Q 048043 597 NDPGLI 602 (742)
Q Consensus 597 l~~~lv 602 (742)
++..-.
T Consensus 297 ~~~~~~ 302 (312)
T cd07489 297 LYATTT 302 (312)
T ss_pred hcCCcc
Confidence 996443
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=391.08 Aligned_cols=247 Identities=26% Similarity=0.331 Sum_probs=204.6
Q ss_pred CccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhh
Q 048043 132 FWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTA 211 (742)
Q Consensus 132 ~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVA 211 (742)
+|..+++|+||+|||||+|||.+||+|.+........ +... .....|..+||||||
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~----------------------~~~~--~~~~~~~~gHGT~VA 57 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFT----------------------YAAA--ACQDGGASAHGTHVA 57 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccC----------------------cccc--CCCCCCCCCcHHHHH
Confidence 7999999999999999999999999998642221110 1000 134567889999999
Q ss_pred hhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC--CCHHHHHHHHHHhhhCCCcEEEEccCCCCC-CCCCCHH
Q 048043 212 TTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG--CSESRVYAAMDTAIDDGVDVLSLSLGAASV-PFFEDPL 288 (742)
Q Consensus 212 GiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~-~~~~~~~ 288 (742)
|||+|+... .+.||||+|+|+.+|++...+ .+..++++||+||+++|++|||||||.... ......+
T Consensus 58 gii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~l 127 (267)
T cd07476 58 SLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPIL 127 (267)
T ss_pred HHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCHHH
Confidence 999987421 247999999999999997654 447789999999999999999999997642 3345567
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEec
Q 048043 289 AIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYP 368 (742)
Q Consensus 289 ~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 368 (742)
..++..+.++|+++|+||||+|.....++...|++|+||+...
T Consensus 128 ~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------------------------------- 170 (267)
T cd07476 128 ANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD------------------------------------- 170 (267)
T ss_pred HHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC-------------------------------------
Confidence 8888889999999999999999887788888999999998421
Q ss_pred CCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHH
Q 048043 369 GANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGES 448 (742)
Q Consensus 369 ~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~ 448 (742)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeecc
Q 048043 449 IKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAG 528 (742)
Q Consensus 449 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sG 528 (742)
.+.++.||+||+.. .||||+|||.+|+++.+. +.|..++|
T Consensus 171 --------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~---------~~~~~~sG 210 (267)
T cd07476 171 --------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALG---------GEVVRRSG 210 (267)
T ss_pred --------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCC---------CCeEEecc
Confidence 12456799999864 478999999999999887 78999999
Q ss_pred ccchhHHHHHHHHHHHhhCCC----CCHHHHHHHHHcccccccCC
Q 048043 529 TSMSCPHLSGVAALLKSAHPD----WSPAAIKSAIMTTADIVSLD 569 (742)
Q Consensus 529 TSmAaP~VAG~aALl~q~~p~----~s~~~ik~~L~~TA~~~~~~ 569 (742)
||||||||||++|||+|.+|. ++|++||++|++||+++...
T Consensus 211 TS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 211 TSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 999999999999999999887 89999999999999988543
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=391.03 Aligned_cols=278 Identities=42% Similarity=0.623 Sum_probs=215.8
Q ss_pred CCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCC-------------CCCCCCCCC
Q 048043 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGST-------------GEPPLDDEG 205 (742)
Q Consensus 139 G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~-------------~~~~~d~~g 205 (742)
|+||+|||||+|||++||+|.+... .+.++...++|..... .....|..+
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF-----------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATG 63 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC-----------------CCCceeeeeECccCCCCcccccccccccccCCCCCCCC
Confidence 8999999999999999999985321 2233444444443321 012345889
Q ss_pred CchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCC
Q 048043 206 HGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFF 284 (742)
Q Consensus 206 HGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~ 284 (742)
|||||||+|+|...+ ...+.|+||+|+|+.+|++...+ +...+++++|+|+++++++|||||||..... .
T Consensus 64 HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~-~ 134 (295)
T cd07474 64 HGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNG-P 134 (295)
T ss_pred cHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC-C
Confidence 999999999987432 23358999999999999998554 7888999999999999999999999976432 4
Q ss_pred CCHHHHHHHHhhcCCcEEEEecCCCCCCCCCC--CCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCc
Q 048043 285 EDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTS--SNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQ 362 (742)
Q Consensus 285 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 362 (742)
.+.+..++.++.++|+++|+||||+|...... +...+++|+||+.....
T Consensus 135 ~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~----------------------------- 185 (295)
T cd07474 135 DDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD----------------------------- 185 (295)
T ss_pred CCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC-----------------------------
Confidence 56778888899999999999999998765443 56789999999853100
Q ss_pred eeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEe
Q 048043 363 FPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVS 442 (742)
Q Consensus 363 ~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~ 442 (742)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCC-CCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcc
Q 048043 443 YAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSR-GPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKS 521 (742)
Q Consensus 443 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~-Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 521 (742)
.........|+++ |++. ..++||||+|||.+|.+++.... .
T Consensus 186 -----------------------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~~-------~ 227 (295)
T cd07474 186 -----------------------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGSG-------T 227 (295)
T ss_pred -----------------------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCCC-------C
Confidence 0001133344555 4544 57899999999999999987632 5
Q ss_pred cceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCc
Q 048043 522 TFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSA 596 (742)
Q Consensus 522 ~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A 596 (742)
.|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ..+++..+|+|+||+.+|
T Consensus 228 ~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 228 GYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred ceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-------CcCChhccCcceeccccC
Confidence 78999999999999999999999999999999999999999998765432 223457899999999887
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-46 Score=379.23 Aligned_cols=234 Identities=29% Similarity=0.405 Sum_probs=193.4
Q ss_pred cEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhcccccCC
Q 048043 142 VIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNG 221 (742)
Q Consensus 142 V~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~~~~~ 221 (742)
|+|||||||||.+||+|+++. +...++.. ....|..+|||||||||+|+...
T Consensus 1 V~VavIDsGvd~~hp~l~~~~-----------------------~~~~~~~~----~~~~~~~~HGT~vAgiia~~~~~- 52 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV-----------------------IARLFFAG----PGAPAPSAHGTAVASLLAGAGAQ- 52 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc-----------------------cccccCCC----CCCCCCCCCHHHHHHHHhCCCCC-
Confidence 789999999999999997531 11111111 23557889999999999987421
Q ss_pred CcccccCCcceeeecCcceEEEEEEeccCC----CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCHHHHHHHHhhc
Q 048043 222 ANVFGQADGTAVGIAPLAHLAIYKVCDFDG----CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQ 297 (742)
Q Consensus 222 ~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g----~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~ 297 (742)
. .|+||+|+|+.+|++...+ ++..++++||+||+++|++|||||||+.. ...+..++.++.+
T Consensus 53 ---------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~----~~~l~~ai~~a~~ 118 (239)
T cd05561 53 ---------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP----NALLAAAVAAAAA 118 (239)
T ss_pred ---------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC----CHHHHHHHHHHHH
Confidence 1 5999999999999998642 67788999999999999999999999753 3467777788999
Q ss_pred CCcEEEEecCCCCCCC-CCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCC
Q 048043 298 KEIFVSCSAGNEGPNP-STSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSS 376 (742)
Q Consensus 298 ~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (742)
+|+++|+||||+|... ..++...+++|+||+..
T Consensus 119 ~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~---------------------------------------------- 152 (239)
T cd05561 119 RGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVD---------------------------------------------- 152 (239)
T ss_pred CCCEEEEecCCCCCCCCccCcccCCCceEEEeec----------------------------------------------
Confidence 9999999999999763 45677788999998732
Q ss_pred CCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcC
Q 048043 377 AQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINST 456 (742)
Q Consensus 377 ~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 456 (742)
T Consensus 153 -------------------------------------------------------------------------------- 152 (239)
T cd05561 153 -------------------------------------------------------------------------------- 152 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHH
Q 048043 457 SSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHL 536 (742)
Q Consensus 457 ~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~V 536 (742)
..+.+++||++|+.. ||+|||.+|+++.+. +.|..++|||||||||
T Consensus 153 -----------------~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~---------~~~~~~sGTS~AaP~v 198 (239)
T cd05561 153 -----------------ARGRLYREANRGAHV--------DFAAPGVDVWVAAPG---------GGYRYVSGTSFAAPFV 198 (239)
T ss_pred -----------------CCCCccccCCCCCcc--------eEEccccceecccCC---------CCEEEeCCHHHHHHHH
Confidence 123567899999876 999999999998776 7899999999999999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCccccc
Q 048043 537 SGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAG 589 (742)
Q Consensus 537 AG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 589 (742)
||++|||+|++| ++++|||++|++||+++.. +..+..||||
T Consensus 199 aG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~-----------~~~d~~~G~G 239 (239)
T cd05561 199 TAALALLLQASP-LAPDDARARLAATAKDLGP-----------PGRDPVFGYG 239 (239)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHhhccCC-----------CCcCCCcCCC
Confidence 999999999999 9999999999999998743 3456789998
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-45 Score=378.66 Aligned_cols=242 Identities=34% Similarity=0.479 Sum_probs=197.0
Q ss_pred ccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCC-CCCCCCchhhhhhhccccc
Q 048043 141 GVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPP-LDDEGHGTHTATTAAGNFV 219 (742)
Q Consensus 141 gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~-~d~~gHGThVAGiiaG~~~ 219 (742)
||+|||||||||++||+|...... .+.++.+.++|.+.. ... .|..+|||||||||+|+..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~~----------------~~~~i~~~~~~~~~~--~~~~~~~~~HGT~vagiia~~~~ 62 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHLF----------------KNLRILGEYDFVDNS--NNTNYTDDDHGTAVLSTMAGYTP 62 (261)
T ss_pred CCEEEEEccCCCccCcchhhhccc----------------cCCceeeeecCccCC--CCCCCCCCCchhhhheeeeeCCC
Confidence 799999999999999999421000 234566677777653 223 6788999999999998742
Q ss_pred CCCcccccCCcceeeecCcceEEEEEEeccCC---CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCC------------
Q 048043 220 NGANVFGQADGTAVGIAPLAHLAIYKVCDFDG---CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFF------------ 284 (742)
Q Consensus 220 ~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~------------ 284 (742)
+.+.||||+|+|+.+|+..... .....++.|++|+.+++++|||||||.......
T Consensus 63 ----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~ 132 (261)
T cd07493 63 ----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGK 132 (261)
T ss_pred ----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccccccccc
Confidence 2358999999999999876433 345678999999999999999999998642211
Q ss_pred CCHHHHHHHHhhcCCcEEEEecCCCCCC---CCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCC
Q 048043 285 EDPLAIGSFSAIQKEIFVSCSAGNEGPN---PSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSK 361 (742)
Q Consensus 285 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~---~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 361 (742)
...+..++..+.++|+++|+||||+|.. ...++...+++|+||+..
T Consensus 133 ~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~------------------------------- 181 (261)
T cd07493 133 TSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD------------------------------- 181 (261)
T ss_pred chHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec-------------------------------
Confidence 2356777788899999999999999987 355677889999999831
Q ss_pred ceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEE
Q 048043 362 QFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHV 441 (742)
Q Consensus 362 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i 441 (742)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcc
Q 048043 442 SYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKS 521 (742)
Q Consensus 442 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 521 (742)
..+.++.||++||+. +++.||||+|||.++++.... +
T Consensus 182 --------------------------------~~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~---------~ 218 (261)
T cd07493 182 --------------------------------ANGNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD---------G 218 (261)
T ss_pred --------------------------------cCCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC---------C
Confidence 112578899999987 689999999999999986555 6
Q ss_pred cceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 048043 522 TFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 522 ~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 564 (742)
.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 219 ~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 219 NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=377.73 Aligned_cols=246 Identities=35% Similarity=0.473 Sum_probs=195.8
Q ss_pred CCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceee-cCCCCCCCCCCCCCCCchhhhhhhccc
Q 048043 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARN-FLQGSTGEPPLDDEGHGTHTATTAAGN 217 (742)
Q Consensus 139 G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~-~~~~~~~~~~~d~~gHGThVAGiiaG~ 217 (742)
|+||+|||||+|||++||+|.+.-.... .+... ..+. +....+...+.|..+|||||||||+|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~~~~----~~~~~-----------~~~~~~d~~~~~~~~~d~~~HGT~vagii~g~ 65 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYRGWG----GGSAD-----------HDYNWFDPVGNTPLPYDDNGHGTHTMGTMVGN 65 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhcccccC----CCCcc-----------cccccccCCCCCCCCCCCCCchhhhhhheeec
Confidence 8999999999999999999986411000 00000 0011 111111245668899999999999987
Q ss_pred ccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhh------------CCCcEEEEccCCCCCCCCC
Q 048043 218 FVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAID------------DGVDVLSLSLGAASVPFFE 285 (742)
Q Consensus 218 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~------------~g~~VIn~SlG~~~~~~~~ 285 (742)
... +...||||+|+|+.+|++...++...+++++++|+++ ++++|||||||.... ..
T Consensus 66 ~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~--~~ 134 (264)
T cd07481 66 DGD---------GQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG--DN 134 (264)
T ss_pred CCC---------CCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC--Cc
Confidence 421 1127999999999999998877888899999999875 789999999998743 34
Q ss_pred CHHHHHHHHhhcCCcEEEEecCCCCCCCC---CCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCc
Q 048043 286 DPLAIGSFSAIQKEIFVSCSAGNEGPNPS---TSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQ 362 (742)
Q Consensus 286 ~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 362 (742)
..+..++..+.++|++||+||||++.+.. .++...+++|+||+..
T Consensus 135 ~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~-------------------------------- 182 (264)
T cd07481 135 EWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATD-------------------------------- 182 (264)
T ss_pred hHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecC--------------------------------
Confidence 55666777888899999999999986643 2567788999998842
Q ss_pred eeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEe
Q 048043 363 FPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVS 442 (742)
Q Consensus 363 ~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~ 442 (742)
T Consensus 183 -------------------------------------------------------------------------------- 182 (264)
T cd07481 183 -------------------------------------------------------------------------------- 182 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCccc
Q 048043 443 YAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKST 522 (742)
Q Consensus 443 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~ 522 (742)
..+.++.||++||.. .++.||||+|||.+|.++++. +.
T Consensus 183 -------------------------------~~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~---------~~ 220 (264)
T cd07481 183 -------------------------------RNDVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG---------GG 220 (264)
T ss_pred -------------------------------CCCCCccccCCCCCC--CCCcCceEEECCCCeEEecCC---------Cc
Confidence 123678899999998 579999999999999999887 78
Q ss_pred ceeeccccchhHHHHHHHHHHHhhCCC--CCHHHHHHHHHcccc
Q 048043 523 FNMVAGTSMSCPHLSGVAALLKSAHPD--WSPAAIKSAIMTTAD 564 (742)
Q Consensus 523 y~~~sGTSmAaP~VAG~aALl~q~~p~--~s~~~ik~~L~~TA~ 564 (742)
|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 221 ~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 221 YGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred eEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=382.65 Aligned_cols=258 Identities=26% Similarity=0.356 Sum_probs=186.9
Q ss_pred CccEEEEEcccCCCCCCCCCCCCCCCCCC-ccccccccCccccCccccceeecCCCC---------------------CC
Q 048043 140 KGVIIGVMDTGITPGHPSFSDEGMPPPPA-KWKGKCEFKGAACNNKLIGARNFLQGS---------------------TG 197 (742)
Q Consensus 140 ~gV~VaVIDtGid~~Hp~f~~~g~~~~~~-~~~g~~~~g~~f~n~ki~~~~~~~~~~---------------------~~ 197 (742)
++|+|||||||||++||+|+++....... ..++..+.+.+|.. + +.+++|.... +.
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~d-d-~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~ 78 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYID-D-VNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDV 78 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccc-c-ccCeeccCCcccccccccCcccccccccccccc
Confidence 68999999999999999998642111000 01111112222210 0 2223333210 12
Q ss_pred CCCCCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhhCCCcEEEEccC
Q 048043 198 EPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLG 277 (742)
Q Consensus 198 ~~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~VIn~SlG 277 (742)
..+.+..+|||||||||+|...+ ..| +.||||+|+|+.+|++........++++||+||+++|++|||||||
T Consensus 79 ~~~~~~~gHGT~VAGiIaa~~~n-------~~g-~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G 150 (291)
T cd07483 79 NGPISDADHGTHVAGIIAAVRDN-------GIG-IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFG 150 (291)
T ss_pred CCCCCCCCcHHHHHHHHhCcCCC-------CCc-eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 23446889999999999987422 122 5799999999999998654467788999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCC---CC--------CCCCceEEecccCCcceeEEEEEeCCCee
Q 048043 278 AASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPST---SS--------NEAPWILSVGASTTDRSIVASVELGNQAV 346 (742)
Q Consensus 278 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~--------~~~p~vitVga~~~~~~~~~~~~~~~g~~ 346 (742)
..... ....+..++..+.++|+++|+||||+|.+... ++ ...+++|+||+....
T Consensus 151 ~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~-------------- 215 (291)
T cd07483 151 KSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK-------------- 215 (291)
T ss_pred CCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc--------------
Confidence 75322 23456777778899999999999999865321 11 123455666653210
Q ss_pred EeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCC
Q 048043 347 YDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNG 426 (742)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~ 426 (742)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEE
Q 048043 427 YSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNIL 506 (742)
Q Consensus 427 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~ 506 (742)
.....++.||++|+. +|||+|||.+|+
T Consensus 216 ----------------------------------------------~~~~~~~~~Sn~G~~-------~vdi~APG~~i~ 242 (291)
T cd07483 216 ----------------------------------------------YENNLVANFSNYGKK-------NVDVFAPGERIY 242 (291)
T ss_pred ----------------------------------------------CCcccccccCCCCCC-------ceEEEeCCCCeE
Confidence 011246889999974 459999999999
Q ss_pred eccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 048043 507 AAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 507 sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 564 (742)
++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 243 s~~~~---------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 243 STTPD---------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred eccCc---------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 99877 78999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=385.88 Aligned_cols=220 Identities=29% Similarity=0.368 Sum_probs=165.6
Q ss_pred CCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC---CCHHHHHHHHHHhhhCCCcEEEEccC
Q 048043 201 LDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG---CSESRVYAAMDTAIDDGVDVLSLSLG 277 (742)
Q Consensus 201 ~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~~VIn~SlG 277 (742)
.|+.+|||||||||||+..+ ...+.||||+|+|+++|+++... ....++++||++|++.+++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 47789999999999997422 23358999999999999986542 23457999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHH-hhcCCcEEEEecCCCCCCCCCC--CC-CCCceEEecccCCcceeEEEEEeCCCeeEeeeecc
Q 048043 278 AASVPFFEDPLAIGSFS-AIQKEIFVSCSAGNEGPNPSTS--SN-EAPWILSVGASTTDRSIVASVELGNQAVYDGEALF 353 (742)
Q Consensus 278 ~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~--~~-~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~ 353 (742)
..........+...+.+ +.++|+++|+||||+|+...+. ++ ..+++|+|||..........
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~--------------- 318 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE--------------- 318 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc---------------
Confidence 87532222234444433 4568999999999999876654 33 57899999995211100000
Q ss_pred CCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCC
Q 048043 354 QPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADP 433 (742)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~ 433 (742)
|.
T Consensus 319 ---------y~--------------------------------------------------------------------- 320 (412)
T cd04857 319 ---------YS--------------------------------------------------------------------- 320 (412)
T ss_pred ---------cc---------------------------------------------------------------------
Confidence 00
Q ss_pred ccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCc
Q 048043 434 HLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSV 513 (742)
Q Consensus 434 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~ 513 (742)
......+.++.||||||+. +|++||||+|||+.|.+. +...
T Consensus 321 ------------------------------------~~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~-p~~~ 361 (412)
T cd04857 321 ------------------------------------LREKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASV-PNWT 361 (412)
T ss_pred ------------------------------------cccccCCccccccccCCcc--cCCcCceEEeCCCcEEEc-ccCC
Confidence 0001134688999999998 799999999999999875 2211
Q ss_pred cCCCCCcccceeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHcccccc
Q 048043 514 ENKTNTKSTFNMVAGTSMSCPHLSGVAALLKS----AHPDWSPAAIKSAIMTTADIV 566 (742)
Q Consensus 514 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~~s~~~ik~~L~~TA~~~ 566 (742)
...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 362 ------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 ------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred ------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 15789999999999999999999985 578999999999999999864
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=375.51 Aligned_cols=330 Identities=28% Similarity=0.410 Sum_probs=254.7
Q ss_pred CCceEEEEECCCCCCCCcchhccchHHHHHhhccccccc--CCCCCC------------ceEEEE--cc-eeeEEEEEcC
Q 048043 29 SLETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISS--SINNQP------------RMLYCY--KN-VITGFAAKLT 91 (742)
Q Consensus 29 ~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~------------~~~~~y--~~-~~~g~s~~~~ 91 (742)
.+.+|||.|+... .... .+.|.+|++++.+..... .+.... .+.+.| .. +|+|+.-.++
T Consensus 79 ~~~~YiV~f~~~~---~q~~-~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft 154 (501)
T KOG1153|consen 79 LPSRYIVVFKPDA---SQQK-ISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFT 154 (501)
T ss_pred cccceEEEeCCCc---cHHH-HHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccc
Confidence 4679999999655 3333 556666666544322110 001000 133333 33 7888888999
Q ss_pred HHHHHHhhcCCCeEEEEeceeecccc-----CCCCCccCccCCCC-------Ccc----CCCCCCccEEEEEcccCCCCC
Q 048043 92 AEQAKAMETKEGFISAHVEKTLQLHT-----THTPNFLGLHQNSG-------FWK----DSNLGKGVIIGVMDTGITPGH 155 (742)
Q Consensus 92 ~~~i~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~~~~-------~~~----~~~~G~gV~VaVIDtGid~~H 155 (742)
.+-+..++..|-++.++++...+... .+....||+.++.. .|- .-..|+||..+|+||||+.+|
T Consensus 155 ~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H 234 (501)
T KOG1153|consen 155 GESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEH 234 (501)
T ss_pred cceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccc
Confidence 99999999999999999987766543 34444567655221 121 123799999999999999999
Q ss_pred CCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhcccccCCCcccccCCcceeee
Q 048043 156 PSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGI 235 (742)
Q Consensus 156 p~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~Gv 235 (742)
|||.++ +.| |.| +... ....|++||||||||+|+++. .||
T Consensus 235 ~dFegR------a~w-Ga~----------------i~~~---~~~~D~nGHGTH~AG~I~sKt--------------~Gv 274 (501)
T KOG1153|consen 235 PDFEGR------AIW-GAT----------------IPPK---DGDEDCNGHGTHVAGLIGSKT--------------FGV 274 (501)
T ss_pred cccccc------eec-ccc----------------cCCC---CcccccCCCcceeeeeeeccc--------------ccc
Confidence 999976 233 111 1111 346789999999999999884 799
Q ss_pred cCcceEEEEEEeccCC-CCHHHHHHHHHHhhhC---------CCcEEEEccCCCCCCCCCCHHHHHHHHhhcCCcEEEEe
Q 048043 236 APLAHLAIYKVCDFDG-CSESRVYAAMDTAIDD---------GVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCS 305 (742)
Q Consensus 236 AP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~---------g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~A 305 (742)
|.+++|+++||++++| ++.+++++++|++++. +..|.|||+|+..+ -++..|+..|.+.|+.+++|
T Consensus 275 AK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S----~aLn~AV~~A~~~Gi~fa~A 350 (501)
T KOG1153|consen 275 AKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRS----AALNMAVNAASERGIHFAVA 350 (501)
T ss_pred ccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCccc----HHHHHHHHHHhhcCeEEEEc
Confidence 9999999999999999 9999999999999986 46799999999754 46777778999999999999
Q ss_pred cCCCCCCCCC-CCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCC
Q 048043 306 AGNEGPNPST-SSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSL 384 (742)
Q Consensus 306 AGN~g~~~~~-~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 384 (742)
|||+..+.+. .|+.+..+|||||++.
T Consensus 351 AGNe~eDAC~~SPass~~aITVGAst~----------------------------------------------------- 377 (501)
T KOG1153|consen 351 AGNEHEDACNSSPASSKKAITVGASTK----------------------------------------------------- 377 (501)
T ss_pred CCCcchhhhccCcccccccEEeccccc-----------------------------------------------------
Confidence 9999988764 4688999999999642
Q ss_pred CCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEE
Q 048043 385 SSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIV 464 (742)
Q Consensus 385 ~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~ 464 (742)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHH
Q 048043 465 FKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLK 544 (742)
Q Consensus 465 ~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 544 (742)
.+.+|.|||||++. ||.|||.+|+|+|.+.. ....+.||||||+|||||++|.++
T Consensus 378 ----------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~-------~at~ilSGTSMasPhvaG~aAy~l 432 (501)
T KOG1153|consen 378 ----------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN-------NATAILSGTSMASPHVAGLAAYFL 432 (501)
T ss_pred ----------ccchhhhcCcccee--------eeecCchhhhhhhhcCc-------cchheeecccccCcchhhhHHHhh
Confidence 13789999999999 99999999999999854 567889999999999999999999
Q ss_pred hhCCC---------CCHHHHHHHHHcccc
Q 048043 545 SAHPD---------WSPAAIKSAIMTTAD 564 (742)
Q Consensus 545 q~~p~---------~s~~~ik~~L~~TA~ 564 (742)
+.+|. .+|.++|..++.-..
T Consensus 433 s~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 433 SLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 99883 388888888877654
|
|
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-44 Score=373.95 Aligned_cols=261 Identities=31% Similarity=0.404 Sum_probs=201.8
Q ss_pred CCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecC--CCCCCCCCCCCCCCch
Q 048043 131 GFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL--QGSTGEPPLDDEGHGT 208 (742)
Q Consensus 131 ~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~--~~~~~~~~~d~~gHGT 208 (742)
.+|..+++|+||+|+|||||||++||+|.+.........+ ...+.+. .+.......|..+|||
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~gHGT 65 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDPA---------------VNGYNFVPNVGDIDNDVSVGGGHGT 65 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCCCcccc---------------cCCcccccccCCcCCCCCCCCCCHH
Confidence 3799999999999999999999999999975111000000 0001111 0111134567889999
Q ss_pred hhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCH
Q 048043 209 HTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDP 287 (742)
Q Consensus 209 hVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~ 287 (742)
||||||+|...+.....|.. .+.|+||+++|+.+|++...+ .....++++|+|+++.|++|||||||......+...
T Consensus 66 ~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~ 143 (273)
T cd07485 66 HVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPL 143 (273)
T ss_pred HHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCCccccCHH
Confidence 99999998753322111111 235799999999999998765 777889999999999999999999998754445566
Q ss_pred HHHHHHHhhcC-------CcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCC
Q 048043 288 LAIGSFSAIQK-------EIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPS 360 (742)
Q Consensus 288 ~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 360 (742)
+..++..+.++ |+++|+||||++......+...+++|+||+.+.
T Consensus 144 ~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~----------------------------- 194 (273)
T cd07485 144 LKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT----------------------------- 194 (273)
T ss_pred HHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC-----------------------------
Confidence 77777788877 999999999999887777888899999998421
Q ss_pred CceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEE
Q 048043 361 KQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVH 440 (742)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~ 440 (742)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCC-cEEeccCCCccCCCCC
Q 048043 441 VSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGV-NILAAWPFSVENKTNT 519 (742)
Q Consensus 441 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~-~I~sa~~~~~~~~~~~ 519 (742)
.+.++.||++|+.. ||+|||. .|+++++... ...
T Consensus 195 ----------------------------------~~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~---~~~ 229 (273)
T cd07485 195 ----------------------------------NDNKASFSNYGRWV--------DIAAPGVGTILSTVPKLD---GDG 229 (273)
T ss_pred ----------------------------------CCCcCccccCCCce--------EEEeCCCCcccccccccc---CCC
Confidence 13567899999876 9999999 8988877531 112
Q ss_pred cccceeeccccchhHHHHHHHHHHHhhCCC-CCHHHHHHHHHcc
Q 048043 520 KSTFNMVAGTSMSCPHLSGVAALLKSAHPD-WSPAAIKSAIMTT 562 (742)
Q Consensus 520 ~~~y~~~sGTSmAaP~VAG~aALl~q~~p~-~s~~~ik~~L~~T 562 (742)
.+.|..++|||||||+|||++|||+|++|+ ++|+|||++|++|
T Consensus 230 ~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 230 GGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred CCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 267899999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=370.93 Aligned_cols=255 Identities=37% Similarity=0.572 Sum_probs=205.0
Q ss_pred CCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCC-CCCCCCCCCCCCchhhhhhhccc
Q 048043 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQG-STGEPPLDDEGHGTHTATTAAGN 217 (742)
Q Consensus 139 G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~-~~~~~~~d~~gHGThVAGiiaG~ 217 (742)
|+||+|+|||+|||++||+|.+..... ..+... .......|..+|||||||||+|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~~-----------------------~~~~~~~~~~~~~~d~~~HGT~vAgiiag~ 57 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIRF-----------------------ADFVNTVNGRTTPYDDNGHGTHVAGIIAGS 57 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccccc-----------------------ccccccccCCCCCCCCCCchHHHHHHHhcC
Confidence 899999999999999999998642110 111110 01145667889999999999988
Q ss_pred ccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhC----CCcEEEEccCCCCC-CCCCCHHHHH
Q 048043 218 FVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDD----GVDVLSLSLGAASV-PFFEDPLAIG 291 (742)
Q Consensus 218 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~~VIn~SlG~~~~-~~~~~~~~~a 291 (742)
..+. .+.+.|+||+|+|+.+|+++..+ ....++++|++|++++ +++|||||||.... ......+..+
T Consensus 58 ~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~~~ 130 (264)
T cd07487 58 GRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQA 130 (264)
T ss_pred Cccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHHHH
Confidence 5321 23358999999999999998876 6778999999999998 99999999998753 4566788888
Q ss_pred HHHhhcCCcEEEEecCCCCCCCC--CCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecC
Q 048043 292 SFSAIQKEIFVSCSAGNEGPNPS--TSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPG 369 (742)
Q Consensus 292 ~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (742)
+.++.++|+++|+||||++.... ..+...+++|+||+...+..
T Consensus 131 ~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~----------------------------------- 175 (264)
T cd07487 131 VERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP----------------------------------- 175 (264)
T ss_pred HHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC-----------------------------------
Confidence 88999999999999999998775 55677899999998532210
Q ss_pred CCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHH
Q 048043 370 ANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESI 449 (742)
Q Consensus 370 ~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l 449 (742)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccc
Q 048043 450 KAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGT 529 (742)
Q Consensus 450 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGT 529 (742)
....++.||++||+. +++.||||+|||.+|+++.+..........+.|..++||
T Consensus 176 ------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~GT 229 (264)
T cd07487 176 ------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEMSGT 229 (264)
T ss_pred ------------------------CCccccccccCCCCC--CCCcCCCEEccccceEeccccccccCCCCCCceEecccc
Confidence 002478899999998 689999999999999997654322222333688999999
Q ss_pred cchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 048043 530 SMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 530 SmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 564 (742)
|||||+|||++|||+|++|++++.+||++|++||+
T Consensus 230 S~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 230 SMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred chHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=366.07 Aligned_cols=232 Identities=37% Similarity=0.565 Sum_probs=196.9
Q ss_pred CccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhh
Q 048043 132 FWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTA 211 (742)
Q Consensus 132 ~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVA 211 (742)
+|..+++|+||+|||||+||+++||+|.++ +...+++... ....|..+||||||
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~-----------------------~~~~~~~~~~---~~~~d~~~HGT~vA 70 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR-----------------------AIWGADFVGG---DPDSDCNGHGTHVA 70 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC-----------------------eeeeeecCCC---CCCCCCCccHHHHH
Confidence 677789999999999999999999999753 1222344433 23668899999999
Q ss_pred hhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhC-----CCcEEEEccCCCCCCCCC
Q 048043 212 TTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDD-----GVDVLSLSLGAASVPFFE 285 (742)
Q Consensus 212 GiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~-----g~~VIn~SlG~~~~~~~~ 285 (742)
|||+|.. .||||+|+|+.+|+++..+ ...++++++++|++++ +++|||||||... .
T Consensus 71 giia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~----~ 132 (255)
T cd04077 71 GTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA----S 132 (255)
T ss_pred HHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC----C
Confidence 9999863 6999999999999998876 7778899999999987 4899999999874 4
Q ss_pred CHHHHHHHHhhcCCcEEEEecCCCCCCC-CCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCcee
Q 048043 286 DPLAIGSFSAIQKEIFVSCSAGNEGPNP-STSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFP 364 (742)
Q Consensus 286 ~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 364 (742)
..+..++.++.++|+++|+||||+|.+. ...+...+++|+||+...
T Consensus 133 ~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~--------------------------------- 179 (255)
T cd04077 133 TALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS--------------------------------- 179 (255)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC---------------------------------
Confidence 5677777789999999999999999776 455778899999998421
Q ss_pred EEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehh
Q 048043 365 LIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYA 444 (742)
Q Consensus 365 ~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~ 444 (742)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccce
Q 048043 445 AGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFN 524 (742)
Q Consensus 445 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~ 524 (742)
.+.+++||++||.. ||+|||.+|.++..... +.|.
T Consensus 180 ------------------------------~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~~-------~~~~ 214 (255)
T cd04077 180 ------------------------------DDARASFSNYGSCV--------DIFAPGVDILSAWIGSD-------TATA 214 (255)
T ss_pred ------------------------------CCCccCcccCCCCC--------cEEeCCCCeEecccCCC-------CcEE
Confidence 12467899999987 99999999999887422 6899
Q ss_pred eeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccc
Q 048043 525 MVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADI 565 (742)
Q Consensus 525 ~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~ 565 (742)
.++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 215 ~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 215 TLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred eeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=364.21 Aligned_cols=241 Identities=34% Similarity=0.503 Sum_probs=204.4
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCch
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGT 208 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGT 208 (742)
...+|..+ +|+||+|+|||+|||++||+|... ++...+++.+.. ..+.|..+|||
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~----------------------~~~~~~~~~~~~--~~~~d~~~HGT 72 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV----------------------KFVLGYDFVDND--SDAMDDNGHGT 72 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC----------------------CcccceeccCCC--CCCCCCCCcHH
Confidence 45689988 999999999999999999998422 233334444432 34668899999
Q ss_pred hhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCH
Q 048043 209 HTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDP 287 (742)
Q Consensus 209 hVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~ 287 (742)
||||||++.... ...+.|+||+|+|+.+|+++..+ +...+++++|+++++.+++|||||||... ....
T Consensus 73 ~vagii~~~~~~--------~~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~---~~~~ 141 (260)
T cd07484 73 HVAGIIAAATNN--------GTGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL---GSTA 141 (260)
T ss_pred HHHHHHhCccCC--------CCceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC---CCHH
Confidence 999999987422 12347999999999999998766 77889999999999999999999999873 4566
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEe
Q 048043 288 LAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIY 367 (742)
Q Consensus 288 ~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 367 (742)
+..++..+.++|++||+||||+|.....+++..+++|+||+.+.
T Consensus 142 ~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------------------------------ 185 (260)
T cd07484 142 LQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ------------------------------------ 185 (260)
T ss_pred HHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC------------------------------------
Confidence 77777888899999999999999988888999999999998421
Q ss_pred cCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHH
Q 048043 368 PGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGE 447 (742)
Q Consensus 368 ~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~ 447 (742)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeec
Q 048043 448 SIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVA 527 (742)
Q Consensus 448 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~s 527 (742)
.+..+.||++|+.. |++|||.+|+++.+. +.|..++
T Consensus 186 ---------------------------~~~~~~~s~~g~~~--------~~~apG~~i~~~~~~---------~~~~~~~ 221 (260)
T cd07484 186 ---------------------------DDKRASFSNYGKWV--------DVSAPGGGILSTTPD---------GDYAYMS 221 (260)
T ss_pred ---------------------------CCCcCCcCCCCCCc--------eEEeCCCCcEeecCC---------CCEEEee
Confidence 12567899999876 999999999998876 7899999
Q ss_pred cccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccc
Q 048043 528 GTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIV 566 (742)
Q Consensus 528 GTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~ 566 (742)
|||||||+|||++||+++++| +++++||++|++||+++
T Consensus 222 GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 222 GTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred eHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 999999999999999999999 99999999999999875
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=358.12 Aligned_cols=251 Identities=37% Similarity=0.489 Sum_probs=188.7
Q ss_pred ccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCC--CCCCCCCCCCCCchhhhhhhcccc
Q 048043 141 GVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQG--STGEPPLDDEGHGTHTATTAAGNF 218 (742)
Q Consensus 141 gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~--~~~~~~~d~~gHGThVAGiiaG~~ 218 (742)
||+|||||+|||++||+|.+.- ....+|..+ .......|..+|||||||||+|+.
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~-----------------------~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~ 57 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV-----------------------AQWADFDENRRISATEVFDAGGHGTHVSGTIGGGG 57 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc-----------------------CCceeccCCCCCCCCCCCCCCCcHHHHHHHHhcCC
Confidence 7999999999999999998531 111122110 112345678899999999999974
Q ss_pred cCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCHHHHHHHHhhc-
Q 048043 219 VNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQ- 297 (742)
Q Consensus 219 ~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~- 297 (742)
. .+.+.||||+++|+.+|++...++..++++++|+|+++++++|||||||..... .+.+..++....+
T Consensus 58 ~---------~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~~~~~~~~~~~~~~ 126 (254)
T cd07490 58 A---------KGVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--EDPLEEAVEALSNQ 126 (254)
T ss_pred C---------CCCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--CcHHHHHHHHHHHc
Confidence 3 223479999999999999987777889999999999999999999999987533 4566655555554
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCC
Q 048043 298 KEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSA 377 (742)
Q Consensus 298 ~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (742)
+|+++|+||||+|......+...+++|+||+...+..... +.
T Consensus 127 ~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~-----------------------------~s--------- 168 (254)
T cd07490 127 TGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAW-----------------------------FS--------- 168 (254)
T ss_pred CCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccC-----------------------------cc---------
Confidence 6999999999999887788888999999999643221000 00
Q ss_pred CcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCC
Q 048043 378 QCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTS 457 (742)
Q Consensus 378 ~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 457 (742)
T Consensus 169 -------------------------------------------------------------------------------- 168 (254)
T cd07490 169 -------------------------------------------------------------------------------- 168 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHH
Q 048043 458 SPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLS 537 (742)
Q Consensus 458 ~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 537 (742)
..........+.+|... ....|||++|||.+|+++... ....+.|..++|||||||+||
T Consensus 169 ---------------~~g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~-----~~~~~~~~~~~GTS~AaP~va 227 (254)
T cd07490 169 ---------------SFGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQG-----ANGDGQYTRLSGTSMAAPHVA 227 (254)
T ss_pred ---------------CCcccccccccCCCCCc-cCCcCceEEeccCCeEccccC-----CCCCCCeeecccHHHHHHHHH
Confidence 00001122233344332 357899999999999996522 112268999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHcccc
Q 048043 538 GVAALLKSAHPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 538 G~aALl~q~~p~~s~~~ik~~L~~TA~ 564 (742)
|++|||+|++|++++.+||++|++||+
T Consensus 228 G~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 228 GVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=368.69 Aligned_cols=258 Identities=26% Similarity=0.286 Sum_probs=186.4
Q ss_pred EEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhcccccCCC
Q 048043 143 IIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGA 222 (742)
Q Consensus 143 ~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~~~~~~ 222 (742)
+|||||||||.+||+|.+.- .....+.... ....|..||||||||||++....
T Consensus 2 ~VaviDtGi~~~hp~l~~~~-----------------------~~~~~~~~~~--~~~~d~~gHGT~vAgiia~~~~~-- 54 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPAL-----------------------AEDDLDSDEP--GWTADDLGHGTAVAGLALYGDLT-- 54 (291)
T ss_pred EEEEecCCCCCCChhhhhhh-----------------------ccccccccCC--CCcCCCCCChHHHHHHHHcCccc--
Confidence 79999999999999998531 1111121110 11568999999999999975321
Q ss_pred cccccCCcceeeecCcceEEEEEEeccCC-----CCHHHHHHHHHHhhhCC---CcEEEEccCCCCCCCCC--CHHHHHH
Q 048043 223 NVFGQADGTAVGIAPLAHLAIYKVCDFDG-----CSESRVYAAMDTAIDDG---VDVLSLSLGAASVPFFE--DPLAIGS 292 (742)
Q Consensus 223 ~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-----~~~~~i~~ai~~a~~~g---~~VIn~SlG~~~~~~~~--~~~~~a~ 292 (742)
.....|+||+++|+.+|++...| ....++++||+|+++++ ++|||||||........ ..+..++
T Consensus 55 ------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~~~i 128 (291)
T cd04847 55 ------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWAAAL 128 (291)
T ss_pred ------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHHHHH
Confidence 12237999999999999998763 56678999999999863 49999999987532211 2444444
Q ss_pred H-HhhcCCcEEEEecCCCCCCCCC------------CCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCC
Q 048043 293 F-SAIQKEIFVSCSAGNEGPNPST------------SSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFP 359 (742)
Q Consensus 293 ~-~a~~~Gi~vV~AAGN~g~~~~~------------~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 359 (742)
. .+.++|++||+||||++..... .++..+++|+|||...+...... +.+
T Consensus 129 d~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~------------s~~------ 190 (291)
T cd04847 129 DQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR------------ARY------ 190 (291)
T ss_pred HHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc------------ccc------
Confidence 3 3568999999999999987543 24567899999996433210000 000
Q ss_pred CCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEE
Q 048043 360 SKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAV 439 (742)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~ 439 (742)
T Consensus 191 -------------------------------------------------------------------------------- 190 (291)
T cd04847 191 -------------------------------------------------------------------------------- 190 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCc------
Q 048043 440 HVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSV------ 513 (742)
Q Consensus 440 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~------ 513 (742)
+.......+.||++||.. ++.+||||+|||++|.+..+...
T Consensus 191 -------------------------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~ 237 (291)
T cd04847 191 -------------------------------SAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLS 237 (291)
T ss_pred -------------------------------cccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCcce
Confidence 000001233499999998 78999999999999987644211
Q ss_pred ---cCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 048043 514 ---ENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 514 ---~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 564 (742)
.........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 238 ~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 238 LLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred eeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 011123368999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=364.73 Aligned_cols=249 Identities=26% Similarity=0.333 Sum_probs=184.1
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCch
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGT 208 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGT 208 (742)
+..+|+++++|+||+|||||||||..|| |..++.. +. ..+..+ ......|+.||||
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~~---------------~~~~~~-~~~~~~D~~gHGT 65 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------VR---------------VVLAPG-ATDPACDENGHGT 65 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------ce---------------eecCCC-CCCCCCCCCCcch
Confidence 4569999999999999999999999998 7643211 10 001110 0134567889999
Q ss_pred hhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhhCCCcEEEEccCCCCCCC-----
Q 048043 209 HTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVPF----- 283 (742)
Q Consensus 209 hVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~----- 283 (742)
|||+++ .||||+|+|+.+|+++. ..+++++||+||++++++|||||||......
T Consensus 66 ~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~ 124 (298)
T cd07494 66 GESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNSWGYDLRSPGTSWS 124 (298)
T ss_pred heeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEeecccCCCCcccccc
Confidence 999875 49999999999999875 4567999999999999999999999863211
Q ss_pred -----CCCHHHHHHHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCC
Q 048043 284 -----FEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDF 358 (742)
Q Consensus 284 -----~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 358 (742)
....+..++.+|.++|++||+||||++. .+|+..|++|+||+...+.. +
T Consensus 125 ~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g-------------- 178 (298)
T cd07494 125 RSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------G-------------- 178 (298)
T ss_pred cccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------C--------------
Confidence 1335777888889999999999999874 56889999999999533211 0
Q ss_pred CCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccE
Q 048043 359 PSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPA 438 (742)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~ 438 (742)
T Consensus 179 -------------------------------------------------------------------------------- 178 (298)
T cd07494 179 -------------------------------------------------------------------------------- 178 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCcccccc--CCCCCCCCCCCcccce----------------Ee
Q 048043 439 VHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFS--SRGPSIASPGILKPDI----------------IG 500 (742)
Q Consensus 439 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fS--s~Gp~~~~~~~~KPDI----------------~A 500 (742)
.....++ ++... ..+++.|||+ +|
T Consensus 179 -------------------------------------~~~~~~~~~~~~s~-~~~g~~~pd~~~~~g~~~~~~~~~~~~A 220 (298)
T cd07494 179 -------------------------------------ARRASSYASGFRSK-IYPGRQVPDVCGLVGMLPHAAYLMLPVP 220 (298)
T ss_pred -------------------------------------cccccccccCcccc-cCCCCccCccccccCcCCcccccccccC
Confidence 0000111 11111 1246677776 47
Q ss_pred cCCcEEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccccc
Q 048043 501 PGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVS 567 (742)
Q Consensus 501 PG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~ 567 (742)
||..|.++..... ........|..++|||||||||||++|||+|++|.|++++||.+|++||+++.
T Consensus 221 PG~~i~~~~~~~~-~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~ 286 (298)
T cd07494 221 PGSQLDRSCAAFP-DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVT 286 (298)
T ss_pred CCcceeccccCCC-CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC
Confidence 9999876543211 01112367999999999999999999999999999999999999999999774
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=363.83 Aligned_cols=259 Identities=27% Similarity=0.358 Sum_probs=190.1
Q ss_pred ccEEEEEcccCCCCCCCCCCCCCCCCCCccccc-c-ccCccccCccccceeecC-------CCCCCCCCCCCCCCchhhh
Q 048043 141 GVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGK-C-EFKGAACNNKLIGARNFL-------QGSTGEPPLDDEGHGTHTA 211 (742)
Q Consensus 141 gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~-~-~~g~~f~n~ki~~~~~~~-------~~~~~~~~~d~~gHGThVA 211 (742)
||+|||||||||++||+|.++...... ..+.. . ..+.. ...+.....++. .........+..+||||||
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~g~d-~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vA 78 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLPGYD-FISDPAIANDGDG-RDSDPTDPGDWVTGDDVPPGGFCGSGVSPSSWHGTHVA 78 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccccCcc-cccCcccccCCCC-CCCCCCCcccccccccccccccccCCCCCCCCCHHHHH
Confidence 799999999999999999875321100 00000 0 00000 000000000000 0000233456789999999
Q ss_pred hhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhh----------hCCCcEEEEccCCCCC
Q 048043 212 TTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAI----------DDGVDVLSLSLGAASV 281 (742)
Q Consensus 212 GiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~----------~~g~~VIn~SlG~~~~ 281 (742)
|||+|...+ ...+.||||+|+|+.+|+++..+...+++++|++|++ .++++|||||||....
T Consensus 79 giiaa~~~~--------~~~~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~~~~ 150 (285)
T cd07496 79 GTIAAVTNN--------GVGVAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDGA 150 (285)
T ss_pred HHHhCcCCC--------CCCceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCCCCC
Confidence 999997531 1224799999999999999887778889999999998 4578999999998742
Q ss_pred CCCCCHHHHHHHHhhcCCcEEEEecCCCCCCC-CCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCC
Q 048043 282 PFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNP-STSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPS 360 (742)
Q Consensus 282 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 360 (742)
. ...+..++..+.++|++||+||||++.+. ..++...+++|+||+..
T Consensus 151 ~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~------------------------------ 198 (285)
T cd07496 151 C--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATD------------------------------ 198 (285)
T ss_pred C--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccC------------------------------
Confidence 2 45777788889999999999999999876 56778889999999842
Q ss_pred CceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEE
Q 048043 361 KQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVH 440 (742)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~ 440 (742)
T Consensus 199 -------------------------------------------------------------------------------- 198 (285)
T cd07496 199 -------------------------------------------------------------------------------- 198 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCcc------
Q 048043 441 VSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVE------ 514 (742)
Q Consensus 441 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~------ 514 (742)
..+.++.||++|+.. ||+|||++|.++......
T Consensus 199 ---------------------------------~~~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~~~ 237 (285)
T cd07496 199 ---------------------------------LRGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTG 237 (285)
T ss_pred ---------------------------------CCCCcccccCCCCCC--------CEEeCCCCccccCCCCcccccccc
Confidence 123678899999987 999999999988765321
Q ss_pred CCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 048043 515 NKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTT 562 (742)
Q Consensus 515 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~T 562 (742)
........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 238 ~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 238 TTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 112223578899999999999999999999999999999999999986
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=365.16 Aligned_cols=277 Identities=31% Similarity=0.386 Sum_probs=202.7
Q ss_pred CCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhh
Q 048043 135 DSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTA 214 (742)
Q Consensus 135 ~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGii 214 (742)
++++|+||+|||||+|||++||+|.+... .+..|.++++.....+... ..|..+|||||||||
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~~~~~~~~~~~~~~~~-----~~d~~~HGT~vAgii 64 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTNLFHRKIVRYDSLSDT-----KDDVDGHGTHVAGII 64 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCccCcccEEEeeccCCC-----CCCCCCCcchhheee
Confidence 58999999999999999999999986421 1111233444444443332 237899999999999
Q ss_pred cccccCCCcccccCCcceeeecCcceEEEEEEeccCC--CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCHHHHHH
Q 048043 215 AGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG--CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGS 292 (742)
Q Consensus 215 aG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~a~ 292 (742)
+|....... ...+.|+||+|+|+.+|++...+ ....++..+++++.+.+++|||||||...... ......++
T Consensus 65 a~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~~-~~~~~~~~ 138 (293)
T cd04842 65 AGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNG-YTLLARAY 138 (293)
T ss_pred ccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCccc-cchHHHHH
Confidence 998533211 11358999999999999998765 55667899999999999999999999875321 22333333
Q ss_pred HHhh-c-CCcEEEEecCCCCCCCC---CCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEe
Q 048043 293 FSAI-Q-KEIFVSCSAGNEGPNPS---TSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIY 367 (742)
Q Consensus 293 ~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 367 (742)
.++. + +|+++|+||||++.... ..+...+++|+||+..........
T Consensus 139 ~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~----------------------------- 189 (293)
T cd04842 139 DQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGE----------------------------- 189 (293)
T ss_pred HHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccccc-----------------------------
Confidence 3333 3 89999999999998765 567889999999996443210000
Q ss_pred cCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHH
Q 048043 368 PGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGE 447 (742)
Q Consensus 368 ~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~ 447 (742)
.|..
T Consensus 190 ----------~~~~------------------------------------------------------------------ 193 (293)
T cd04842 190 ----------GGLG------------------------------------------------------------------ 193 (293)
T ss_pred ----------cccc------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeec
Q 048043 448 SIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVA 527 (742)
Q Consensus 448 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~s 527 (742)
.....+.++.||++||+. ++++||||+|||++|+++.+............|..++
T Consensus 194 -----------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~~~~~~~~~~~~~~~ 248 (293)
T cd04842 194 -----------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGGIGDTSDSAYTSKS 248 (293)
T ss_pred -----------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCCCCCCCChhheeecC
Confidence 012234789999999998 6899999999999999997542111122236789999
Q ss_pred cccchhHHHHHHHHHHHhhC-----C---CCCHHHHHHHHHcccc
Q 048043 528 GTSMSCPHLSGVAALLKSAH-----P---DWSPAAIKSAIMTTAD 564 (742)
Q Consensus 528 GTSmAaP~VAG~aALl~q~~-----p---~~s~~~ik~~L~~TA~ 564 (742)
|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 249 GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 249 GTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 99999999999999999985 4 6667799999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=362.44 Aligned_cols=265 Identities=30% Similarity=0.414 Sum_probs=186.6
Q ss_pred cCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhh
Q 048043 134 KDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATT 213 (742)
Q Consensus 134 ~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGi 213 (742)
..+++|+||+|||||+|||.+||+|.+.. +...+|.+. ....|..+||||||||
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~-----------------------~~~~~~~~~---~~~~d~~gHGT~VAgi 55 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD-----------------------ITTKSFVGG---EDVQDGHGHGTHCAGT 55 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc-----------------------ccCcccCCC---CCCCCCCCcHHHHHHH
Confidence 35789999999999999999999998541 112334433 3356889999999999
Q ss_pred hcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCC---------
Q 048043 214 AAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPF--------- 283 (742)
Q Consensus 214 iaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~--------- 283 (742)
|+|+..+ +...||||+|+|+.+|++...+ ....++++||+||+++|++|||||||......
T Consensus 56 iag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~ 126 (297)
T cd07480 56 IFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGL 126 (297)
T ss_pred HhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCCCc
Confidence 9987432 2236999999999999997655 67778999999999999999999999854111
Q ss_pred -CCCHHHHHHHHh---------------hcCCcEEEEecCCCCCCCCCCC-----CCCCceEEecccCCcceeEEEEEeC
Q 048043 284 -FEDPLAIGSFSA---------------IQKEIFVSCSAGNEGPNPSTSS-----NEAPWILSVGASTTDRSIVASVELG 342 (742)
Q Consensus 284 -~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~-----~~~p~vitVga~~~~~~~~~~~~~~ 342 (742)
....+......+ .++|+++|+||||++....... ...+.+++|++..
T Consensus 127 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~------------ 194 (297)
T cd07480 127 AFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVG------------ 194 (297)
T ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEEC------------
Confidence 111222222233 6799999999999986543221 1112222222210
Q ss_pred CCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEecc
Q 048043 343 NQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMND 422 (742)
Q Consensus 343 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~ 422 (742)
T Consensus 195 -------------------------------------------------------------------------------- 194 (297)
T cd07480 195 -------------------------------------------------------------------------------- 194 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecC
Q 048043 423 KLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPG 502 (742)
Q Consensus 423 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG 502 (742)
..+....|+++.+. ...||||+|||
T Consensus 195 ---------------------------------------------------~~~~~~~~~~~~~~----~~~~~dv~ApG 219 (297)
T cd07480 195 ---------------------------------------------------ALGRTGNFSAVANF----SNGEVDIAAPG 219 (297)
T ss_pred ---------------------------------------------------CCCCCCCccccCCC----CCCceEEEeCC
Confidence 01122223333322 24578999999
Q ss_pred CcEEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCC
Q 048043 503 VNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPAD 582 (742)
Q Consensus 503 ~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 582 (742)
.+|+++.+. +.|..++|||||||+|||++|||+|++|++++.+++.+|++......... . .....
T Consensus 220 ~~i~s~~~~---------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~-~-----~~~~~ 284 (297)
T cd07480 220 VDIVSAAPG---------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQ-F-----APGLD 284 (297)
T ss_pred CCeEeecCC---------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCC-C-----CCCCC
Confidence 999999887 78999999999999999999999999999999888888874322210000 0 11245
Q ss_pred CCcccccccCcCC
Q 048043 583 MFAVGAGHVNPSS 595 (742)
Q Consensus 583 ~~~~G~G~vd~~~ 595 (742)
...+|+|++++.+
T Consensus 285 ~~~~g~G~~~~~~ 297 (297)
T cd07480 285 LPDRGVGLGLAPA 297 (297)
T ss_pred hhhcCCceeecCC
Confidence 5689999998753
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=351.19 Aligned_cols=239 Identities=30% Similarity=0.430 Sum_probs=190.8
Q ss_pred cEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhcccccCC
Q 048043 142 VIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNG 221 (742)
Q Consensus 142 V~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~~~~~ 221 (742)
|+|||||+|||++||+|.+.. ++...+++.... ....|..+|||||||||+|+..+
T Consensus 1 V~VaviDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~--~~~~~~~~HGT~vAgiiag~~~~- 56 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP---------------------KLVPGWNFVSNN--DPTSDIDGHGTACAGVAAAVGNN- 56 (242)
T ss_pred CEEEEecCCCCCCChhhccCc---------------------CccCCccccCCC--CCCCCCCCCHHHHHHHHHhccCC-
Confidence 789999999999999998630 011112222211 24567899999999999987421
Q ss_pred CcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCC-CCCCCHHHHHHHHhhc-C
Q 048043 222 ANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASV-PFFEDPLAIGSFSAIQ-K 298 (742)
Q Consensus 222 ~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~-~~~~~~~~~a~~~a~~-~ 298 (742)
...+.|+||+|+|+.+|++...+ ....++.++++|+++++++|||||||.... ......+..++..+.+ +
T Consensus 57 -------~~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~ 129 (242)
T cd07498 57 -------GLGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGK 129 (242)
T ss_pred -------CceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhhcC
Confidence 22358999999999999998765 678889999999999999999999998643 2335567777777888 9
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCC
Q 048043 299 EIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQ 378 (742)
Q Consensus 299 Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (742)
|+++|+||||+|......++..+++|+||+.+.
T Consensus 130 gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~----------------------------------------------- 162 (242)
T cd07498 130 GGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS----------------------------------------------- 162 (242)
T ss_pred CeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC-----------------------------------------------
Confidence 999999999999887777888999999998421
Q ss_pred cCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCC
Q 048043 379 CSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSS 458 (742)
Q Consensus 379 c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 458 (742)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHHH
Q 048043 459 PNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSG 538 (742)
Q Consensus 459 ~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG 538 (742)
.+.+++||++||.. |++|||.++...........+...+.|..++|||||||+|||
T Consensus 163 ----------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~GTS~Aap~vaG 218 (242)
T cd07498 163 ----------------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGGYGSFSGTSFASPVAAG 218 (242)
T ss_pred ----------------CCCccCcCCCCCCe--------EEEeCcCCcccCCccccccccCCCCceEeeCcHHHHHHHHHH
Confidence 12567899999987 999999999888544221222233678999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHcc
Q 048043 539 VAALLKSAHPDWSPAAIKSAIMTT 562 (742)
Q Consensus 539 ~aALl~q~~p~~s~~~ik~~L~~T 562 (742)
++|||+|++|+|++++||++|++|
T Consensus 219 ~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 219 VAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=341.07 Aligned_cols=226 Identities=36% Similarity=0.571 Sum_probs=188.1
Q ss_pred ccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhcccccC
Q 048043 141 GVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVN 220 (742)
Q Consensus 141 gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~~~~ 220 (742)
||+|||||+||+.+||+|.+. +....+|....+ ....|..+|||||||||+|....
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~-----------------------~~~~~~~~~~~~-~~~~~~~~HGT~vA~ii~~~~~~ 56 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN-----------------------IVGGANFTGDDN-NDYQDGNGHGTHVAGIIAALDNG 56 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc-----------------------ccCcccccCCCC-CCCCCCCCCHHHHHHHHhcccCC
Confidence 799999999999999999853 112223332211 24567889999999999987432
Q ss_pred CCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCHHHHHHHHhhcCC
Q 048043 221 GANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKE 299 (742)
Q Consensus 221 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~~G 299 (742)
. .+.|+||+|+|+.+|+++..+ ....+++++++|+++++++|||||||... ....+..++..+.++|
T Consensus 57 ~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~---~~~~~~~~~~~a~~~g 124 (229)
T cd07477 57 V---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS---DSPALREAIKKAYAAG 124 (229)
T ss_pred C---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC---CCHHHHHHHHHHHHCC
Confidence 1 347999999999999998876 67789999999999999999999999863 3345667777889999
Q ss_pred cEEEEecCCCCCCCCCC--CCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCC
Q 048043 300 IFVSCSAGNEGPNPSTS--SNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSA 377 (742)
Q Consensus 300 i~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (742)
+++|+||||++...... ++..+++|+||+.+.
T Consensus 125 iliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~---------------------------------------------- 158 (229)
T cd07477 125 ILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS---------------------------------------------- 158 (229)
T ss_pred CEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC----------------------------------------------
Confidence 99999999999876654 788899999998421
Q ss_pred CcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCC
Q 048043 378 QCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTS 457 (742)
Q Consensus 378 ~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 457 (742)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHH
Q 048043 458 SPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLS 537 (742)
Q Consensus 458 ~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 537 (742)
.+.+..||++|+.. |+.|||.+|+++++. +.|..++|||||||+||
T Consensus 159 -----------------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~---------~~~~~~~GTS~Aap~va 204 (229)
T cd07477 159 -----------------NNNRASFSSTGPEV--------ELAAPGVDILSTYPN---------NDYAYLSGTSMATPHVA 204 (229)
T ss_pred -----------------CCCcCCccCCCCCc--------eEEeCCCCeEEecCC---------CCEEEEccHHHHHHHHH
Confidence 12566899999876 999999999999887 78999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHcc
Q 048043 538 GVAALLKSAHPDWSPAAIKSAIMTT 562 (742)
Q Consensus 538 G~aALl~q~~p~~s~~~ik~~L~~T 562 (742)
|++|||+|++|++++.+||++|++|
T Consensus 205 g~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 205 GVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999999986
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=350.38 Aligned_cols=244 Identities=21% Similarity=0.285 Sum_probs=176.5
Q ss_pred CCCCccCC-CCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCc
Q 048043 129 NSGFWKDS-NLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHG 207 (742)
Q Consensus 129 ~~~~~~~~-~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHG 207 (742)
+..+|+.. ..|+||+|+|||+|||.+||+|.++... +... ....|+.+||
T Consensus 4 ~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~--------------------------~~~~---~~~~d~~gHG 54 (277)
T cd04843 4 ARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT--------------------------LISG---LTDQADSDHG 54 (277)
T ss_pred hHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc--------------------------ccCC---CCCCCCCCCc
Confidence 34588874 4599999999999999999999864211 0000 1246789999
Q ss_pred hhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhh----CCCcEEEEccCCCCCCC
Q 048043 208 THTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAID----DGVDVLSLSLGAASVPF 283 (742)
Q Consensus 208 ThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~----~g~~VIn~SlG~~~~~~ 283 (742)
|||||||+|.. +..| +.||||+|+|+.+|++. .++++++|.||++ .++.+||||||......
T Consensus 55 T~VAGiIaa~~--------n~~G-~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~~~ 120 (277)
T cd04843 55 TAVLGIIVAKD--------NGIG-VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVILLEMQTGGPNNGY 120 (277)
T ss_pred chhheeeeeec--------CCCc-eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEEEEccccCCCcCc
Confidence 99999999862 1223 47999999999999985 2345566666665 45678999999864221
Q ss_pred ------CCCHHHHHHHHhhcCCcEEEEecCCCCCCCCCC------------C-CCCCceEEecccCCcceeEEEEEeCCC
Q 048043 284 ------FEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTS------------S-NEAPWILSVGASTTDRSIVASVELGNQ 344 (742)
Q Consensus 284 ------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~------------~-~~~p~vitVga~~~~~~~~~~~~~~~g 344 (742)
....+..++.++.++|+++|+||||++.+.... + ...+++|+|||...+
T Consensus 121 ~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~------------ 188 (277)
T cd04843 121 PPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST------------ 188 (277)
T ss_pred ccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC------------
Confidence 223455677788899999999999998753211 1 123457777763210
Q ss_pred eeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCC
Q 048043 345 AVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKL 424 (742)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~ 424 (742)
T Consensus 189 -------------------------------------------------------------------------------- 188 (277)
T cd04843 189 -------------------------------------------------------------------------------- 188 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCc
Q 048043 425 NGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVN 504 (742)
Q Consensus 425 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~ 504 (742)
....++.||+||+.. ||+|||++
T Consensus 189 -------------------------------------------------~~~~~~~fSn~G~~v--------di~APG~~ 211 (277)
T cd04843 189 -------------------------------------------------TGHTRLAFSNYGSRV--------DVYGWGEN 211 (277)
T ss_pred -------------------------------------------------CCCccccccCCCCcc--------ceEcCCCC
Confidence 011378999999987 99999999
Q ss_pred EEeccCCCcc-CCCCCcccceeeccccchhHHHHHHHHHHHh----h-CCCCCHHHHHHHHHcccc
Q 048043 505 ILAAWPFSVE-NKTNTKSTFNMVAGTSMSCPHLSGVAALLKS----A-HPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 505 I~sa~~~~~~-~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~~s~~~ik~~L~~TA~ 564 (742)
|+++.+.... ......+.|..++|||||||||||++|||++ + +|+|+++|||++|++|++
T Consensus 212 i~s~~~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 212 VTTTGYGDLQDLGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred eEecCCCCcccccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 9999876331 0111123457899999999999999999974 3 499999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=345.98 Aligned_cols=251 Identities=33% Similarity=0.467 Sum_probs=192.1
Q ss_pred CccEEEEEcccCCCCCCCCCCCCCCCC-CCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhcccc
Q 048043 140 KGVIIGVMDTGITPGHPSFSDEGMPPP-PAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNF 218 (742)
Q Consensus 140 ~gV~VaVIDtGid~~Hp~f~~~g~~~~-~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~~ 218 (742)
+||+|||||||||++||+|.++..... ...+.+....+..| -.+. ..++|... ..++.|..+|||||||||+|..
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~--~~~~~d~~~HGT~va~ii~~~~ 77 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGNGY-VDDI-YGWNFVNN--DNDPMDDNGHGTHVAGIIGAVG 77 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCCCc-ccCC-CcccccCC--CCCCCCCCCcHHHHHHHHHCcC
Confidence 689999999999999999997421100 00111111111111 0001 11122221 2556788999999999999874
Q ss_pred cCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCHHHHHHHHhhc
Q 048043 219 VNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQ 297 (742)
Q Consensus 219 ~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~ 297 (742)
.+ ...+.|+||+|+|+.+|++...+ ++..+++++++++++++++|||+|||.... ...+..++.++.+
T Consensus 78 ~~--------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~---~~~~~~~~~~~~~ 146 (259)
T cd07473 78 NN--------GIGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP---SQALRDAIARAID 146 (259)
T ss_pred CC--------CCceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC---CHHHHHHHHHHHh
Confidence 32 22357999999999999998877 788899999999999999999999998732 5677788888999
Q ss_pred CCcEEEEecCCCCCCC---CCCCC--CCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCC
Q 048043 298 KEIFVSCSAGNEGPNP---STSSN--EAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANG 372 (742)
Q Consensus 298 ~Gi~vV~AAGN~g~~~---~~~~~--~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (742)
+|+++|+||||+|... ..++. ..+++|+||+..
T Consensus 147 ~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~------------------------------------------ 184 (259)
T cd07473 147 AGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATD------------------------------------------ 184 (259)
T ss_pred CCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecC------------------------------------------
Confidence 9999999999998762 23333 357888888742
Q ss_pred CCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHH
Q 048043 373 NVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAY 452 (742)
Q Consensus 373 ~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 452 (742)
T Consensus 185 -------------------------------------------------------------------------------- 184 (259)
T cd07473 185 -------------------------------------------------------------------------------- 184 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccch
Q 048043 453 INSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMS 532 (742)
Q Consensus 453 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA 532 (742)
..+.++.||++||. +||+.|||.++++..+. +.|..++|||||
T Consensus 185 ---------------------~~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~---------~~~~~~~GTS~A 227 (259)
T cd07473 185 ---------------------SNDALASFSNYGKK-------TVDLAAPGVDILSTSPG---------GGYGYMSGTSMA 227 (259)
T ss_pred ---------------------CCCCcCcccCCCCC-------CcEEEeccCCeEeccCC---------CcEEEeccHhHH
Confidence 12356679999985 36999999999997766 789999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 048043 533 CPHLSGVAALLKSAHPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 533 aP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 564 (742)
||+|||++||++|++|.+++++||++|++||+
T Consensus 228 aP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 228 TPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=344.08 Aligned_cols=210 Identities=22% Similarity=0.287 Sum_probs=167.1
Q ss_pred CCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCC-----CCCCCCCCCCchhhhhh
Q 048043 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGST-----GEPPLDDEGHGTHTATT 213 (742)
Q Consensus 139 G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~-----~~~~~d~~gHGThVAGi 213 (742)
+++|+|||||||||++||+|.++- ...++|....+ .....|..|||||||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i-----------------------~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgi 58 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKI-----------------------IGGKSFSPYEGDGNKVSPYYVSADGHGTAMARM 58 (247)
T ss_pred CCCCEEEEECCCcCCCchhhcccc-----------------------ccCCCCCCCCCCcccCCCCCCCCCCcHHHHHHH
Confidence 789999999999999999998531 11112221110 12235789999999999
Q ss_pred hcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-------CCHHHHHHHHHHhhhCCCcEEEEccCCCCCC---C
Q 048043 214 AAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-------CSESRVYAAMDTAIDDGVDVLSLSLGAASVP---F 283 (742)
Q Consensus 214 iaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-------~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~---~ 283 (742)
|+ |+||+|+|+.+|+++..+ ++...+++||+||+++|++|||||||..... .
T Consensus 59 I~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~ 120 (247)
T cd07491 59 IC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDN 120 (247)
T ss_pred HH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeeccccccccc
Confidence 96 789999999999998643 3567899999999999999999999986432 1
Q ss_pred CCCHHHHHHHHhhcCCcEEEEecCCCCCCCC-C--CCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCC
Q 048043 284 FEDPLAIGSFSAIQKEIFVSCSAGNEGPNPS-T--SSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPS 360 (742)
Q Consensus 284 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~--~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 360 (742)
....+..++.+|.++|++||+||||+|.... . .+...+++|+|||.+.
T Consensus 121 ~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~----------------------------- 171 (247)
T cd07491 121 DINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE----------------------------- 171 (247)
T ss_pred chHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC-----------------------------
Confidence 2567888888999999999999999998754 3 3466789999998421
Q ss_pred CceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEE
Q 048043 361 KQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVH 440 (742)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~ 440 (742)
T Consensus 172 -------------------------------------------------------------------------------- 171 (247)
T cd07491 172 -------------------------------------------------------------------------------- 171 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCc
Q 048043 441 VSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTK 520 (742)
Q Consensus 441 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 520 (742)
.+.++.||++|+.. |++|||++|+++.+.. ..
T Consensus 172 ----------------------------------~g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~------~~ 203 (247)
T cd07491 172 ----------------------------------DGGADAPVGDEDRV--------DYILPGENVEARDRPP------LS 203 (247)
T ss_pred ----------------------------------CCCCccccCCCCcc--------eEEeCCCceecCCcCC------CC
Confidence 23567899999887 9999999999987621 11
Q ss_pred ccceeeccccchhHHHHHHHHHHHhh
Q 048043 521 STFNMVAGTSMSCPHLSGVAALLKSA 546 (742)
Q Consensus 521 ~~y~~~sGTSmAaP~VAG~aALl~q~ 546 (742)
+.|..++|||||||||||++||+++.
T Consensus 204 ~~~~~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 204 NSFVTHTGSSVATALAAGLAALILYC 229 (247)
T ss_pred CCeeeeccHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=354.88 Aligned_cols=273 Identities=38% Similarity=0.557 Sum_probs=208.0
Q ss_pred EEEEEcccCCCCCCCCC-CCCCCCCCCccccccccCccccCccccceeecCCCC-CCCCCCCCCCCchhhhhhhcccccC
Q 048043 143 IIGVMDTGITPGHPSFS-DEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGS-TGEPPLDDEGHGTHTATTAAGNFVN 220 (742)
Q Consensus 143 ~VaVIDtGid~~Hp~f~-~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~-~~~~~~d~~gHGThVAGiiaG~~~~ 220 (742)
+|||||||||++||+|. ++ + ...++.+.+.|.++. +.....|..+|||||||||+|.. .
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~va~ii~~~~-~ 61 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F-----------------IWSKVPGGYNFVDGNPNPSPSDDDNGHGTHVAGIIAGNG-G 61 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E-----------------EEEEEEEEEETTTTBSTTTSSSTSSSHHHHHHHHHHHTT-S
T ss_pred CEEEEcCCcCCCChhHccCC-c-----------------ccccccceeeccCCCCCcCccccCCCccchhhhhccccc-c
Confidence 69999999999999998 32 0 111223344555442 23456778999999999999985 2
Q ss_pred CCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhh-hCCCcEEEEccCCCC---CCCCCCHHHHHHHHhh
Q 048043 221 GANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAI-DDGVDVLSLSLGAAS---VPFFEDPLAIGSFSAI 296 (742)
Q Consensus 221 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~-~~g~~VIn~SlG~~~---~~~~~~~~~~a~~~a~ 296 (742)
.. .....|+||+|+|+.+|++...+....++++++++++ +++++|||||||... .+.....+..+...+.
T Consensus 62 -~~-----~~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~ 135 (282)
T PF00082_consen 62 -NN-----GPGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDYAE 135 (282)
T ss_dssp -SS-----SSSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHHHH
T ss_pred -cc-----ccccccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccccccccccccccccccc
Confidence 11 1224799999999999998777677788999999999 899999999998832 1122234555666788
Q ss_pred cCCcEEEEecCCCCCCCCC---CCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCC
Q 048043 297 QKEIFVSCSAGNEGPNPST---SSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGN 373 (742)
Q Consensus 297 ~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (742)
++|+++|+||||++..... .+...+++|+||+..
T Consensus 136 ~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~------------------------------------------- 172 (282)
T PF00082_consen 136 KKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVD------------------------------------------- 172 (282)
T ss_dssp HTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEE-------------------------------------------
T ss_pred ccCcceeeccccccccccccccccccccccccccccc-------------------------------------------
Confidence 9999999999999877653 556678889998742
Q ss_pred CCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHH
Q 048043 374 VSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYI 453 (742)
Q Consensus 374 ~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 453 (742)
T Consensus 173 -------------------------------------------------------------------------------- 172 (282)
T PF00082_consen 173 -------------------------------------------------------------------------------- 172 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchh
Q 048043 454 NSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533 (742)
Q Consensus 454 ~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAa 533 (742)
..+.++.||++|+... ++++||||+|||.+|.+.++.... ..|..++||||||
T Consensus 173 --------------------~~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~~------~~~~~~~GTS~Aa 225 (282)
T PF00082_consen 173 --------------------NNGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSDR------GSYTSFSGTSFAA 225 (282)
T ss_dssp --------------------TTSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTES------EEEEEEESHHHHH
T ss_pred --------------------cccccccccccccccc-cccccccccccccccccccccccc------ccccccCcCCchH
Confidence 1125688999976543 579999999999999888876210 3578899999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCcCC
Q 048043 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSAND 598 (742)
Q Consensus 534 P~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 598 (742)
|+|||++||++|++|++++.+||++|++||.++.... ....+..||||+||+++|++
T Consensus 226 p~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~--------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 226 PVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN--------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT--------SSSSHHHHTTSBE-HHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC--------CCCCCCCccCChhCHHHHhC
Confidence 9999999999999999999999999999999886221 13456688999999999864
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=350.08 Aligned_cols=248 Identities=26% Similarity=0.283 Sum_probs=181.8
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCC--CCCCC
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPL--DDEGH 206 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~--d~~gH 206 (742)
...+|+.+++|+||+|+|||||||++||+|.++... ...++|....+...+. |..+|
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~gH 86 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP---------------------EASYDFNDNDPDPTPRYDDDNSH 86 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc---------------------cccccccCCCCCCCCcccccccc
Confidence 456999999999999999999999999999864211 0112232222112222 78899
Q ss_pred chhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhhCCCcEEEEccCCCCCC----
Q 048043 207 GTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVP---- 282 (742)
Q Consensus 207 GThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~---- 282 (742)
||||||||+|+... .....||||+|+|+.+|++... .....+..++.++.+ .++|||||||.....
T Consensus 87 GT~vAgiiag~~~~--------~~~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~~~~~~ 156 (297)
T cd04059 87 GTRCAGEIAAVGNN--------GICGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYSNSWGPDDDGKTVD 156 (297)
T ss_pred CcceeeEEEeecCC--------CcccccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEECCCCCCCCCCccC
Confidence 99999999988422 1123799999999999998765 334455666666654 459999999976422
Q ss_pred CCCCHHHHHHHHhhc-----CCcEEEEecCCCCCCCCC----CCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeecc
Q 048043 283 FFEDPLAIGSFSAIQ-----KEIFVSCSAGNEGPNPST----SSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALF 353 (742)
Q Consensus 283 ~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~ 353 (742)
........++.++.+ +|+++|+||||+|..... .....+++|+||+.+.
T Consensus 157 ~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~---------------------- 214 (297)
T cd04059 157 GPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA---------------------- 214 (297)
T ss_pred CCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC----------------------
Confidence 122233444444443 699999999999974221 2245678888888421
Q ss_pred CCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCC
Q 048043 354 QPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADP 433 (742)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~ 433 (742)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCc-------EE
Q 048043 434 HLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVN-------IL 506 (742)
Q Consensus 434 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~-------I~ 506 (742)
.+.++.||++|+.. +++|||.. |+
T Consensus 215 -----------------------------------------~g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~i~ 245 (297)
T cd04059 215 -----------------------------------------NGVRASYSEVGSSV--------LASAPSGGSGNPEASIV 245 (297)
T ss_pred -----------------------------------------CCCCcCCCCCCCcE--------EEEecCCCCCCCCCceE
Confidence 23667899999987 89999987 66
Q ss_pred eccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 048043 507 AAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 507 sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 564 (742)
++.... ....|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus 246 ~~~~~~------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 246 TTDLGG------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred eCCCCC------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 665441 0156788999999999999999999999999999999999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=329.67 Aligned_cols=221 Identities=24% Similarity=0.333 Sum_probs=174.6
Q ss_pred ccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhcccccC
Q 048043 141 GVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVN 220 (742)
Q Consensus 141 gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~~~~ 220 (742)
||+|||||||||++||+|.++... + ..| ....+... .....|..||||||||||++
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~-----~-------~~~-----~~~~~~~~---~~~~~d~~gHGT~vAgiia~---- 56 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD-----G-------EVT-----IDLEIIVV---SAEGGDKDGHGTACAGIIKK---- 56 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc-----c-------ccc-----cccccccC---CCCCCCCCCcHHHHHHHHHc----
Confidence 799999999999999999864211 0 000 00001111 14556789999999999984
Q ss_pred CCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCHHHHHHHHhhcCC
Q 048043 221 GANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKE 299 (742)
Q Consensus 221 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~~G 299 (742)
.+|+++|+.+|+++..+ +..+++++||+|+++++++|||||||..... ....+..++.++.++|
T Consensus 57 --------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-~~~~~~~~~~~a~~~g 121 (222)
T cd07492 57 --------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-DFPLLKELLEYAYKAG 121 (222)
T ss_pred --------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-cCHHHHHHHHHHHHCC
Confidence 46999999999998876 7888999999999999999999999987432 2346677777888899
Q ss_pred cEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCc
Q 048043 300 IFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQC 379 (742)
Q Consensus 300 i~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 379 (742)
+++|+||||++.... .+...+++|+||+...+.
T Consensus 122 ~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~---------------------------------------------- 154 (222)
T cd07492 122 GIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD---------------------------------------------- 154 (222)
T ss_pred CEEEEECCCCCCCCC-CCccCCceEEEEecCCCC----------------------------------------------
Confidence 999999999986543 367788899998742110
Q ss_pred CCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCC
Q 048043 380 SPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSP 459 (742)
Q Consensus 380 ~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 459 (742)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHHHH
Q 048043 460 NATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGV 539 (742)
Q Consensus 460 ~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 539 (742)
.. +.+++ ++|++|||.+|+++.+. +.|..++|||||||+|||+
T Consensus 155 -----------------~~---~~~~~--------~~~~~apg~~i~~~~~~---------~~~~~~~GTS~Aap~vaG~ 197 (222)
T cd07492 155 -----------------PK---SFWYI--------YVEFSADGVDIIAPAPH---------GRYLTVSGNSFAAPHVTGM 197 (222)
T ss_pred -----------------Cc---ccccC--------CceEEeCCCCeEeecCC---------CCEEEeccHHHHHHHHHHH
Confidence 01 11233 34999999999999887 7899999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHcccc
Q 048043 540 AALLKSAHPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 540 aALl~q~~p~~s~~~ik~~L~~TA~ 564 (742)
+|||+|++|+|+++|||++|++||+
T Consensus 198 ~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 198 VALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=344.07 Aligned_cols=249 Identities=28% Similarity=0.329 Sum_probs=173.7
Q ss_pred ccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhcccccC
Q 048043 141 GVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVN 220 (742)
Q Consensus 141 gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~~~~ 220 (742)
.|+|||||||||++||+|.++-...... + .....+ ......... ......|..||||||||+|+|+..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~~-~----~~~~~~----~~~~~~~~~--~~~~~~d~~gHGT~vAgiia~~~~- 68 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSKN-L----VPKGGY----DGKEAGETG--DINDIVDKLGHGTAVAGQIAANGN- 68 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccccccc-c----ccCCCc----CCccccccC--CCCcCCCCCCcHhHHHHHHhcCCC-
Confidence 4899999999999999999532111000 0 000000 000000000 013446779999999999998631
Q ss_pred CCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCC--------CCHHHHH
Q 048043 221 GANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFF--------EDPLAIG 291 (742)
Q Consensus 221 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~--------~~~~~~a 291 (742)
..||||+|+|+.+|+++..+ ....+++++|+||++++++|||||||....... ...+..+
T Consensus 69 -----------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
T cd07482 69 -----------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKA 137 (294)
T ss_pred -----------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhHHHHHH
Confidence 15999999999999998877 488899999999999999999999997542211 1345666
Q ss_pred HHHhhcCCcEEEEecCCCCCCCCC----------------------CCCCCCceEEecccCCcceeEEEEEeCCCeeEee
Q 048043 292 SFSAIQKEIFVSCSAGNEGPNPST----------------------SSNEAPWILSVGASTTDRSIVASVELGNQAVYDG 349 (742)
Q Consensus 292 ~~~a~~~Gi~vV~AAGN~g~~~~~----------------------~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~ 349 (742)
+..+.++|++||+||||+|..... .+...+++|+||+
T Consensus 138 i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga--------------------- 196 (294)
T cd07482 138 INYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSA--------------------- 196 (294)
T ss_pred HHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEe---------------------
Confidence 667788999999999999865321 1122233333333
Q ss_pred eeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccc
Q 048043 350 EALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYST 429 (742)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~ 429 (742)
T Consensus 197 -------------------------------------------------------------------------------- 196 (294)
T cd07482 197 -------------------------------------------------------------------------------- 196 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEecc
Q 048043 430 LADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAW 509 (742)
Q Consensus 430 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~ 509 (742)
....+.++.||++|+.. +|++|||+++....
T Consensus 197 ------------------------------------------~~~~~~~~~~S~~g~~~-------~~~~apG~~~~~~~ 227 (294)
T cd07482 197 ------------------------------------------TDNNGNLSSFSNYGNSR-------IDLAAPGGDFLLLD 227 (294)
T ss_pred ------------------------------------------eCCCCCcCccccCCCCc-------ceEECCCCCccccc
Confidence 12334677899998754 49999999885322
Q ss_pred CCCc---c----------CCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCH-HHHHHHHHcc
Q 048043 510 PFSV---E----------NKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSP-AAIKSAIMTT 562 (742)
Q Consensus 510 ~~~~---~----------~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~-~~ik~~L~~T 562 (742)
.... . ......+.|..++|||||||+|||++|||+|++|.+++ .|||++|++|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 228 QYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred ccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 1110 0 01123467899999999999999999999999999999 9999999986
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=334.55 Aligned_cols=380 Identities=24% Similarity=0.318 Sum_probs=275.4
Q ss_pred CCCCceEEEEECCCCCCCCcchhccchHHHHHhhccccccc--CCCCCCceEEEEcceeeEEEEEcC-----HHHHHHhh
Q 048043 27 TDSLETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISS--SINNQPRMLYCYKNVITGFAAKLT-----AEQAKAME 99 (742)
Q Consensus 27 ~~~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~y~~~~~g~s~~~~-----~~~i~~L~ 99 (742)
...+.+|||.|+... . +..++..+++.|+..... ..-........|..-|.-+-++-. .-+|++|.
T Consensus 46 tvve~EyIv~F~~y~---~----Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe 118 (1033)
T KOG4266|consen 46 TVVESEYIVRFKQYK---P----AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLE 118 (1033)
T ss_pred eeecceeEEEecccc---c----chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehh
Confidence 344678999999977 2 223455556555432100 001122333455555655555432 23589999
Q ss_pred cCCCeEEEEeceeeccccC------------------------------CCCCccCcc------------CCCCCccCCC
Q 048043 100 TKEGFISAHVEKTLQLHTT------------------------------HTPNFLGLH------------QNSGFWKDSN 137 (742)
Q Consensus 100 ~~p~V~~V~~~~~~~~~~~------------------------------~s~~~~g~~------------~~~~~~~~~~ 137 (742)
.+|.|+.|.|.+.+..... ..+.-|+-. .+.-+|+.|+
T Consensus 119 ~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~Gy 198 (1033)
T KOG4266|consen 119 MHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGY 198 (1033)
T ss_pred cCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccc
Confidence 9999999999765543100 000001100 0345899999
Q ss_pred CCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhccc
Q 048043 138 LGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGN 217 (742)
Q Consensus 138 ~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~ 217 (742)
||++|+|||.|||+.-+||.|+.- ....++.+. ....|..||||.|||+|||.
T Consensus 199 TGa~VkvAiFDTGl~~~HPHFrnv------------------------KERTNWTNE---~tLdD~lgHGTFVAGvia~~ 251 (1033)
T KOG4266|consen 199 TGAKVKVAIFDTGLRADHPHFRNV------------------------KERTNWTNE---DTLDDNLGHGTFVAGVIAGR 251 (1033)
T ss_pred cCCceEEEEeecccccCCccccch------------------------hhhcCCcCc---cccccCcccceeEeeeeccc
Confidence 999999999999999999999831 111223322 45667899999999999987
Q ss_pred ccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCHHHHHHHHhh
Q 048043 218 FVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAI 296 (742)
Q Consensus 218 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~a~~~a~ 296 (742)
. ...|.||+++|+++|||.+.. .+.++.++|++||+....||+|+|+|++. +.+.++-+-+....
T Consensus 252 ~------------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD--fmD~PFVeKVwElt 317 (1033)
T KOG4266|consen 252 N------------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPD--FMDLPFVEKVWELT 317 (1033)
T ss_pred h------------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCcc--cccchHHHHHHhhc
Confidence 4 237999999999999998876 78899999999999999999999999984 55667777777888
Q ss_pred cCCcEEEEecCCCCCCCCCCCCCC--CceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCC
Q 048043 297 QKEIFVSCSAGNEGPNPSTSSNEA--PWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNV 374 (742)
Q Consensus 297 ~~Gi~vV~AAGN~g~~~~~~~~~~--p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (742)
..++++|.|+||+|+-..+..+++ ..||.||.
T Consensus 318 AnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG---------------------------------------------- 351 (1033)
T KOG4266|consen 318 ANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG---------------------------------------------- 351 (1033)
T ss_pred cCcEEEEEecCCCCcceeecCCcccccceeeecc----------------------------------------------
Confidence 999999999999999877665433 33444443
Q ss_pred CCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHh
Q 048043 375 SSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYIN 454 (742)
Q Consensus 375 ~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 454 (742)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEEeceeEecccCCCccccccCCCCCC----CCCCCcccceEecCCcEEeccCCCccCCCCCcccceeecccc
Q 048043 455 STSSPNATIVFKGTVIGKKSTPELASFSSRGPSI----ASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTS 530 (742)
Q Consensus 455 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~----~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTS 530 (742)
.+.++.+|.|||||-+. ...||+||||++-|.+|...... .+....||||
T Consensus 352 -----------------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~---------~GCr~LSGTS 405 (1033)
T KOG4266|consen 352 -----------------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS---------TGCRSLSGTS 405 (1033)
T ss_pred -----------------ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc---------ccchhccCCc
Confidence 23345899999999764 12489999999999999877655 6778899999
Q ss_pred chhHHHHHHHHHHHh----hCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCcCCCCc-----
Q 048043 531 MSCPHLSGVAALLKS----AHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSANDPGL----- 601 (742)
Q Consensus 531 mAaP~VAG~aALl~q----~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~l----- 601 (742)
.|+|.|||+++||.+ +.--+.|+.+|++|+..|.++... .-++||+|++|+.++.+--+
T Consensus 406 VaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~------------NMfEQGaGkldLL~syqiL~SYkP~ 473 (1033)
T KOG4266|consen 406 VASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP------------NMFEQGAGKLDLLESYQILKSYKPR 473 (1033)
T ss_pred ccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC------------chhhccCcchhHHHHHHHHHhcCCC
Confidence 999999999999976 334468999999999999998542 34789999999988754211
Q ss_pred ------cccCCCCCcccccccCC
Q 048043 602 ------IYDIQPDDYIPYLCGLN 618 (742)
Q Consensus 602 ------v~~~~~~d~~~~~~~~~ 618 (742)
..|-+...|+..+|++.
T Consensus 474 asl~PsylD~t~cpYmWPycsQP 496 (1033)
T KOG4266|consen 474 ASLFPSYLDYTDCPYMWPYCSQP 496 (1033)
T ss_pred ceecchhcccccCcccCccccCc
Confidence 23555566777777765
|
|
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=330.56 Aligned_cols=242 Identities=27% Similarity=0.338 Sum_probs=186.1
Q ss_pred CCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhccc
Q 048043 138 LGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGN 217 (742)
Q Consensus 138 ~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~ 217 (742)
+|+||+|+|||+||+.+||+|.+......... ...........|..+|||||||||+|+
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~HGT~vagiiag~ 59 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYYV---------------------AVNDAGYASNGDGDSHGTHVAGVIAAA 59 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccccccc---------------------ccccccCCCCCCCCChHHHHHHHHhcC
Confidence 69999999999999999999986522110000 000000134567899999999999988
Q ss_pred ccCCCcccccCCcceeeecCcceEEEEEEeccCC--CCHHHHHHHHHHhhhCCCcEEEEccCCCCCC------------C
Q 048043 218 FVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG--CSESRVYAAMDTAIDDGVDVLSLSLGAASVP------------F 283 (742)
Q Consensus 218 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~------------~ 283 (742)
..+ ..+.|+||+|+|+.+|+++..+ .....+.++++++++.+++|||||||..... .
T Consensus 60 ~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~ 130 (267)
T cd04848 60 RDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAAT 130 (267)
T ss_pred cCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhhccc
Confidence 532 3347999999999999998764 5667789999999999999999999987522 1
Q ss_pred CCCHHHHHHHHhhcCCcEEEEecCCCCCCCCCC---------CCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccC
Q 048043 284 FEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTS---------SNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQ 354 (742)
Q Consensus 284 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~ 354 (742)
....+...+..+.++|+++|+||||++...... +...+++|+||+.+.+
T Consensus 131 ~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~---------------------- 188 (267)
T cd04848 131 QGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN---------------------- 188 (267)
T ss_pred cchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC----------------------
Confidence 455667777788899999999999998654332 2345778888874321
Q ss_pred CCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCc
Q 048043 355 PKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPH 434 (742)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~ 434 (742)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCcccc--ccCCCCCCCCCCCcccceEecCCcEEeccCCC
Q 048043 435 LLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELAS--FSSRGPSIASPGILKPDIIGPGVNILAAWPFS 512 (742)
Q Consensus 435 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 512 (742)
+.... ||++|+.. ..++++|||.+|.++.+..
T Consensus 189 -----------------------------------------~~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~~~ 222 (267)
T cd04848 189 -----------------------------------------GTIASYSYSNRCGVA-----ANWCLAAPGENIYSTDPDG 222 (267)
T ss_pred -----------------------------------------CCcccccccccchhh-----hhheeecCcCceeecccCC
Confidence 12233 48888654 2347999999999988731
Q ss_pred ccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 048043 513 VENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 513 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 564 (742)
. ..|..++|||||||+|||++||++|++|++++++||++|++||+
T Consensus 223 ~-------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 223 G-------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred C-------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 1 68899999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=307.92 Aligned_cols=354 Identities=22% Similarity=0.257 Sum_probs=232.2
Q ss_pred CCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccC-C--CCHHHHHHHHHHhhhCCCcEEEEccCCCC
Q 048043 204 EGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFD-G--CSESRVYAAMDTAIDDGVDVLSLSLGAAS 280 (742)
Q Consensus 204 ~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~-g--~~~~~i~~ai~~a~~~g~~VIn~SlG~~~ 280 (742)
.-|||||||||+|+..+.- ...||||+|+|+++++.+.. | .+...+.+|+..++++.+||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 4599999999999965431 24699999999999997754 2 45567899999999999999999999875
Q ss_pred -CCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCCCC---CCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCC
Q 048043 281 -VPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSS---NEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPK 356 (742)
Q Consensus 281 -~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~---~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 356 (742)
.+.....++.+-....++|+++|.||||.|+...+++ +....+|.|||.-.....
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm--------------------- 440 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM--------------------- 440 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH---------------------
Confidence 4555566665555566899999999999999877665 345578888883111000
Q ss_pred CCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccc
Q 048043 357 DFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLL 436 (742)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~ 436 (742)
...|.
T Consensus 441 ---~a~y~------------------------------------------------------------------------ 445 (1304)
T KOG1114|consen 441 ---QAEYS------------------------------------------------------------------------ 445 (1304)
T ss_pred ---Hhhhh------------------------------------------------------------------------
Confidence 00000
Q ss_pred cEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCC
Q 048043 437 PAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENK 516 (742)
Q Consensus 437 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 516 (742)
.. ..-......+|||||+. ||.+-..|+|||+.|.+- |.+..
T Consensus 446 ---------------~~------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~tl-- 487 (1304)
T KOG1114|consen 446 ---------------VR------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQYTL-- 487 (1304)
T ss_pred ---------------hh------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCC-chhhh--
Confidence 00 01123577899999999 788899999999999663 33221
Q ss_pred CCCcccceeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccC
Q 048043 517 TNTKSTFNMVAGTSMSCPHLSGVAALLKS----AHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVN 592 (742)
Q Consensus 517 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd 592 (742)
..-..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||.+++.. .++.+|.|+++
T Consensus 488 ----q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i------------d~faqG~Gmlq 551 (1304)
T KOG1114|consen 488 ----QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI------------DSFAQGQGMLQ 551 (1304)
T ss_pred ----hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc------------chhccCcceee
Confidence 4557899999999999999999864 567899999999999999998543 46899999999
Q ss_pred cCCcCCCCccccCCCCCccccc-ccCCCC-ccceeEEEeeeeeccCCCCCCcccCCCCceeeeeCCccEEEEEEEEeeCC
Q 048043 593 PSSANDPGLIYDIQPDDYIPYL-CGLNYS-DQHVQDIVMINVQCSKVSGIAETELNYPSFSVILGSTSQTYNRTVTNVGQ 670 (742)
Q Consensus 593 ~~~Al~~~lv~~~~~~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~tv~n~~~ 670 (742)
+++|.+--.-.+.....-+.|+ -..+.+ ...|.. ++++.|. - ...+++-|.-.-.
T Consensus 552 VdkAyEyL~q~~~~f~~~l~f~~v~VgN~~srGIyL--Rep~~~~-----------~----------p~e~~i~VePiF~ 608 (1304)
T KOG1114|consen 552 VDKAYEYLAQSDFSFPNALGFINVNVGNSCSRGIYL--REPTQVC-----------S----------PSEHTIGVEPIFE 608 (1304)
T ss_pred hhHHHHHHHHhhhcCCccceeEEEeeccccccceEe--cCCcccC-----------C----------ccccceecccccc
Confidence 9999762111111111112220 000000 111111 1111111 0 1122222211100
Q ss_pred -------CCceEEEEEECCCCcEEEEEcCeeEecCCCcEEEEEEEEEEccCCCCceEEEEEEEEc-----CceEEEEeEE
Q 048043 671 -------AESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRSQKTSALFAQGYLSWVS-----TKHTVRSPIA 738 (742)
Q Consensus 671 -------~~~~y~~~~~~p~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~~-----~~~~v~~p~~ 738 (742)
+...|.+....-....+.-.|..+-+ .++.+.+.|++++..... +.+++.|.--| .++-+|+|+.
T Consensus 609 ~~~e~~keki~Fe~~L~L~st~pwVq~p~~l~l--~~~~R~i~VrVDpt~l~~-G~hy~eV~gyD~~~p~~gplFrIPVT 685 (1304)
T KOG1114|consen 609 NGEENEKEKISFEVQLSLASTQPWVQCPEYLML--ANQGRGINVRVDPTGLAP-GVHYTEVLGYDTANPSRGPLFRIPVT 685 (1304)
T ss_pred CccccccccccceeeEeeecCCcceeCchhhee--ccCCceeEEEECCcCCCC-CcceEEEEEeecCCcccCceEEeeeE
Confidence 11223322222111223334777766 378899999999998766 68888887543 6899999999
Q ss_pred EEe
Q 048043 739 VRF 741 (742)
Q Consensus 739 v~~ 741 (742)
|..
T Consensus 686 Vi~ 688 (1304)
T KOG1114|consen 686 VIK 688 (1304)
T ss_pred EEc
Confidence 864
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=287.50 Aligned_cols=194 Identities=23% Similarity=0.186 Sum_probs=142.6
Q ss_pred CCCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHh--hhCCCcEEEEccC
Q 048043 200 PLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTA--IDDGVDVLSLSLG 277 (742)
Q Consensus 200 ~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a--~~~g~~VIn~SlG 277 (742)
..|..+|||||||||||. .|++|+++|+..++... ....+.++++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~---~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIK---SNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCC---CCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 457999999999999987 46779999997665322 233466778888 6679999999999
Q ss_pred CCCCCC------CCCHHHHHHHHhhcC-CcEEEEecCCCCCCC-----CCCCCCCCceEEecccCCcceeEEEEEeCCCe
Q 048043 278 AASVPF------FEDPLAIGSFSAIQK-EIFVSCSAGNEGPNP-----STSSNEAPWILSVGASTTDRSIVASVELGNQA 345 (742)
Q Consensus 278 ~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~ 345 (742)
...... ..+.+..++..+.++ |+++|+||||+|... ...+...+++|+|||......
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~----------- 163 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD----------- 163 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-----------
Confidence 864321 233566666666666 999999999999853 234566788999998532110
Q ss_pred eEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCC
Q 048043 346 VYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLN 425 (742)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~ 425 (742)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcE
Q 048043 426 GYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNI 505 (742)
Q Consensus 426 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I 505 (742)
....+.||++|-....+++.||||+|||++|
T Consensus 164 -------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG~~i 194 (247)
T cd07488 164 -------------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPGSNY 194 (247)
T ss_pred -------------------------------------------------cceecccccccCCCCCCCCceeEEEEeeeeE
Confidence 0023455665433323678999999999999
Q ss_pred EeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCH------HHHHHHHHcc
Q 048043 506 LAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSP------AAIKSAIMTT 562 (742)
Q Consensus 506 ~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~------~~ik~~L~~T 562 (742)
++ +. +.|..++|||||||||||++|||++++|++.+ -++|.+|+.+
T Consensus 195 ~s--~~---------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 195 NL--PD---------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred EC--CC---------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 98 33 57889999999999999999999999887764 3566666654
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-31 Score=271.18 Aligned_cols=233 Identities=39% Similarity=0.558 Sum_probs=176.8
Q ss_pred cEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCC-CCCCCCCCCCchhhhhhhcccccC
Q 048043 142 VIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGST-GEPPLDDEGHGTHTATTAAGNFVN 220 (742)
Q Consensus 142 V~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~-~~~~~d~~gHGThVAGiiaG~~~~ 220 (742)
|+|+|||+||+++||+|.... .... ...++....+ .....+..+||||||++|++....
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~---------~~~~-----------~~~~~~~~~~~~~~~~~~~~HGt~va~~i~~~~~~ 60 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLF---------GGGD-----------GGNDDDDNENGPTDPDDGNGHGTHVAGIIAASANN 60 (241)
T ss_pred CEEEEEeCCCCCCCcchhccc---------cCcc-----------cccccccCcCCCCCCCCCCCcHHHHHHHHhcCCCC
Confidence 689999999999999872110 0000 0011111100 023457889999999999987532
Q ss_pred CCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhh-hCCCcEEEEccCCCCCCCCCCHHHHHHHHhhcC
Q 048043 221 GANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAI-DDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQK 298 (742)
Q Consensus 221 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~-~~g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~~ 298 (742)
.. ..|+||+++|+.+|+....+ .....+++++++++ .++++|||||||..... ....+...+.++.++
T Consensus 61 ~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~-~~~~~~~~~~~~~~~ 130 (241)
T cd00306 61 GG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP-PSSALSEAIDYALAK 130 (241)
T ss_pred CC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC-CCHHHHHHHHHHHHh
Confidence 11 16999999999999998766 67788999999999 89999999999987533 345666777777777
Q ss_pred -CcEEEEecCCCCCCCC---CCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCC
Q 048043 299 -EIFVSCSAGNEGPNPS---TSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNV 374 (742)
Q Consensus 299 -Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (742)
|+++|+|+||.+.... ..+...+++|+||+.+.+.
T Consensus 131 ~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~----------------------------------------- 169 (241)
T cd00306 131 LGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG----------------------------------------- 169 (241)
T ss_pred cCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-----------------------------------------
Confidence 9999999999998876 4778899999999853221
Q ss_pred CCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHh
Q 048043 375 SSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYIN 454 (742)
Q Consensus 375 ~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 454 (742)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEEeceeEecccCCCccc-cccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchh
Q 048043 455 STSSPNATIVFKGTVIGKKSTPELA-SFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533 (742)
Q Consensus 455 ~~~~~~~~i~~~~~~~~~~~~~~~a-~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAa 533 (742)
... .++++| .|||+.|||.++...... ....+..++||||||
T Consensus 170 ----------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~~~-------~~~~~~~~~GTS~Aa 212 (241)
T cd00306 170 ----------------------TPASPSSNGG--------AGVDIAAPGGDILSSPTT-------GGGGYATLSGTSMAA 212 (241)
T ss_pred ----------------------CccCCcCCCC--------CCceEEeCcCCccCcccC-------CCCCeEeeccHHHHH
Confidence 111 344444 456999999999875111 126889999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 048043 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562 (742)
Q Consensus 534 P~VAG~aALl~q~~p~~s~~~ik~~L~~T 562 (742)
|+|||++||++|++|++++.++|++|++|
T Consensus 213 p~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 213 PIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 99999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-24 Score=243.77 Aligned_cols=273 Identities=35% Similarity=0.523 Sum_probs=198.0
Q ss_pred CCCCccC--CCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCC
Q 048043 129 NSGFWKD--SNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGH 206 (742)
Q Consensus 129 ~~~~~~~--~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gH 206 (742)
....|.. +++|+||+|+|||+||+..||+|.+.... .++|....+.....|..+|
T Consensus 129 ~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~d~~~h 185 (508)
T COG1404 129 VGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA-----------------------GGDFVDGDPEPPFLDDNGH 185 (508)
T ss_pred cccccccccCCCCCCeEEEEeccCCCCCChhhhccccc-----------------------ccccccCCCCCCCCCCCCC
Confidence 4457777 89999999999999999999999864211 1233333211125689999
Q ss_pred chhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccC-C-CCHHHHHHHHHHhhhCC--CcEEEEccCCCCCC
Q 048043 207 GTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFD-G-CSESRVYAAMDTAIDDG--VDVLSLSLGAASVP 282 (742)
Q Consensus 207 GThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~~~i~~ai~~a~~~g--~~VIn~SlG~~~~~ 282 (742)
||||+|++++.... + .....|++|+++++.+|++... | ....+++++++++++.+ +++||||+|.....
T Consensus 186 Gt~vag~ia~~~~~------~-~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~~~~ 258 (508)
T COG1404 186 GTHVAGTIAAVIFD------N-GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSLSD 258 (508)
T ss_pred cceeeeeeeeeccc------C-CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCCccc
Confidence 99999999984211 1 1124799999999999999866 5 77778899999999999 99999999986222
Q ss_pred CCCCHHHHHHHHhhcCC-cEEEEecCCCCCCCC----CCCCCC--CceEEecccCCcceeEEEEEeCCCeeEeeeeccCC
Q 048043 283 FFEDPLAIGSFSAIQKE-IFVSCSAGNEGPNPS----TSSNEA--PWILSVGASTTDRSIVASVELGNQAVYDGEALFQP 355 (742)
Q Consensus 283 ~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~~----~~~~~~--p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~ 355 (742)
.....+..++..++..| +++|+++||.+.+.. .++... +.+++||+..
T Consensus 259 ~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~------------------------- 313 (508)
T COG1404 259 SASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD------------------------- 313 (508)
T ss_pred cccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC-------------------------
Confidence 33445666666777777 999999999987752 122222 2555555521
Q ss_pred CCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCcc
Q 048043 356 KDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHL 435 (742)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~ 435 (742)
T Consensus 314 -------------------------------------------------------------------------------- 313 (508)
T COG1404 314 -------------------------------------------------------------------------------- 313 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEe-----ccC
Q 048043 436 LPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILA-----AWP 510 (742)
Q Consensus 436 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s-----a~~ 510 (742)
..+.++.||++|+.. ..+++|||.+|.+ .++
T Consensus 314 --------------------------------------~~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~~ 349 (508)
T COG1404 314 --------------------------------------LSDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLP 349 (508)
T ss_pred --------------------------------------CCCccccccccCCCC------CcceeCCCccccccccceeee
Confidence 123678899999752 2299999999988 555
Q ss_pred CCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCC-CCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCccccc
Q 048043 511 FSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHP-DWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAG 589 (742)
Q Consensus 511 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 589 (742)
+.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++.. .. .......++.|
T Consensus 350 ~~~-------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~ 411 (508)
T COG1404 350 GDG-------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL-TP----------LSGVDNLVGGG 411 (508)
T ss_pred CCc-------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc-cc----------CCccccccccC
Confidence 410 2499999999999999999999999999 89999999998888874 00 01233456666
Q ss_pred ccCcCCcCC
Q 048043 590 HVNPSSAND 598 (742)
Q Consensus 590 ~vd~~~Al~ 598 (742)
..+...+..
T Consensus 412 ~~~~~~~~~ 420 (508)
T COG1404 412 LANLDAAAT 420 (508)
T ss_pred ccccccccc
Confidence 666555443
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-21 Score=196.39 Aligned_cols=169 Identities=18% Similarity=0.263 Sum_probs=108.4
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCC--C--CC
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPL--D--DE 204 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~--d--~~ 204 (742)
...+|..|++|++|++||+|.||||-|||++.+ ..--..++|...+..+.|+ | .+
T Consensus 150 v~~awa~g~tgknvttaimddgvdymhpdlk~n---------------------ynaeasydfssndpfpyprytddwfn 208 (629)
T KOG3526|consen 150 VAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN---------------------YNAEASYDFSSNDPFPYPRYTDDWFN 208 (629)
T ss_pred HHHHHhhcccCCCceEEeecCCchhcCcchhcc---------------------cCceeecccccCCCCCCCcccchhhh
Confidence 356899999999999999999999999999843 1122234555443212222 2 47
Q ss_pred CCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhh-CCCcEEEEccCCCCCC-
Q 048043 205 GHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAID-DGVDVLSLSLGAASVP- 282 (742)
Q Consensus 205 gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~~VIn~SlG~~~~~- 282 (742)
.|||.|||-+++...+ +.+| .|||.+.++..+|+++. .+..|+++|-..-.+ ...+|.+.|||.....
T Consensus 209 shgtrcagev~aardn--gicg------vgvaydskvagirmldq--pymtdlieansmghep~kihiysaswgptddgk 278 (629)
T KOG3526|consen 209 SHGTRCAGEVVAARDN--GICG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYSASWGPTDDGK 278 (629)
T ss_pred ccCccccceeeeeccC--Ccee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEecccCcCCCCc
Confidence 8999999988776432 2223 69999999999999876 455666665433222 2468999999976422
Q ss_pred CCC---CHHHHHHHHhhc-----CCcEEEEecCCCCCCC-CCCC--CCCCceEEecc
Q 048043 283 FFE---DPLAIGSFSAIQ-----KEIFVSCSAGNEGPNP-STSS--NEAPWILSVGA 328 (742)
Q Consensus 283 ~~~---~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~-~~~~--~~~p~vitVga 328 (742)
..+ ++..+++-+-++ .|-++|.|.|..|.+. +... +.+-|.|++-+
T Consensus 279 tvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisins 335 (629)
T KOG3526|consen 279 TVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINS 335 (629)
T ss_pred ccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeeh
Confidence 222 223333333333 4679999999988552 2222 33445555543
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-17 Score=178.35 Aligned_cols=100 Identities=22% Similarity=0.248 Sum_probs=80.4
Q ss_pred eeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhhC---CCcEEEEccCCCCCC---CCCCHHHHHHHHhhcCCcEEEEe
Q 048043 232 AVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDD---GVDVLSLSLGAASVP---FFEDPLAIGSFSAIQKEIFVSCS 305 (742)
Q Consensus 232 ~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~---g~~VIn~SlG~~~~~---~~~~~~~~a~~~a~~~Gi~vV~A 305 (742)
+.||||+|+|+.|++.+.. ..+++.++.+++.+ +++|||+|||..... .+.+.+..++.+|..+|++||+|
T Consensus 83 ~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~GitvvaA 159 (361)
T cd04056 83 AGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLAA 159 (361)
T ss_pred HHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 5799999999999997653 35677888888877 999999999987432 12356777778899999999999
Q ss_pred cCCCCCCCC-----------CCCCCCCceEEecccCCcce
Q 048043 306 AGNEGPNPS-----------TSSNEAPWILSVGASTTDRS 334 (742)
Q Consensus 306 AGN~g~~~~-----------~~~~~~p~vitVga~~~~~~ 334 (742)
+||+|.... .+++..|+|++||+++....
T Consensus 160 sGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 160 SGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred CCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 999997653 35688999999999866543
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=109.22 Aligned_cols=117 Identities=30% Similarity=0.468 Sum_probs=92.3
Q ss_pred CCCceeEEecCCCCCCCCCCcCCCCCC-CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCC-Cccc
Q 048043 359 PSKQFPLIYPGANGNVSSAQCSPGSLS-SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLAD-PHLL 436 (742)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~-~~~~ 436 (742)
.....+++|.+. |...++. .+++|||+||+|+.|.+.+|..+++.+||.++|++++.......... ...+
T Consensus 24 ~~~~~~lv~~g~--------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~i 95 (143)
T cd02133 24 LGKTYELVDAGL--------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFI 95 (143)
T ss_pred CCcEEEEEEccC--------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeE
Confidence 345788888654 3344445 67999999999999999999999999999999999887543222222 3568
Q ss_pred cEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCC
Q 048043 437 PAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSI 488 (742)
Q Consensus 437 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 488 (742)
|.+.|+..+|..|++++.+ ++++.+..+.. ..+.+.++.||||||+.
T Consensus 96 P~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 96 PVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred eEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 9999999999999999987 66777777655 45778899999999973
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.9e-10 Score=103.82 Aligned_cols=121 Identities=52% Similarity=0.920 Sum_probs=97.0
Q ss_pred EEeCCCeeEeeeeccCCCCCCCCceeEEecCC-CCCCCCCCcCCCCCC-CCccceEEEeecCCc-chhhhhHHHhhcCCe
Q 048043 339 VELGNQAVYDGEALFQPKDFPSKQFPLIYPGA-NGNVSSAQCSPGSLS-SNIRGKLVLCERGGG-ERTKKGQVVKDAGGI 415 (742)
Q Consensus 339 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~c~~~~~~-~~~~g~iv~~~~g~~-~~~~~~~~~~~~g~~ 415 (742)
+.++||+.+.|++++++.. ..+++++... ........|.+..++ .+++|||++|+++.| .+.++..+++.+||.
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~ 78 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGA 78 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCc
Confidence 5789999999999996543 4567766333 223345789888887 899999999999999 889999999999999
Q ss_pred EEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEE
Q 048043 416 GMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNAT 462 (742)
Q Consensus 416 ~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 462 (742)
|+|++++.............+|.+.|+.++|..|++|+++..+++++
T Consensus 79 gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 79 GMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999886554333333567999999999999999999987766554
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-09 Score=90.78 Aligned_cols=82 Identities=28% Similarity=0.500 Sum_probs=59.4
Q ss_pred eEEEEECCCCCCCCcchhccchHHHHHhhcccccccCCCCCCceEEEEcceeeEEEEEcCHHHHHHhhcCCCeEEEEece
Q 048043 32 TYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCYKNVITGFAAKLTAEQAKAMETKEGFISAHVEK 111 (742)
Q Consensus 32 ~yIV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~i~~L~~~p~V~~V~~~~ 111 (742)
+|||.|++.. ........+.+++.+++.+..........++.+.|...|+||+++++++++++|+++|+|++|+|+.
T Consensus 1 ~YIV~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~ 77 (82)
T PF05922_consen 1 RYIVVFKDDA---SAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQ 77 (82)
T ss_dssp EEEEEE-TTS---THHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEEC
T ss_pred CEEEEECCCC---CcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCc
Confidence 6999999987 4433356677777766554221102568899999999999999999999999999999999999999
Q ss_pred eeccc
Q 048043 112 TLQLH 116 (742)
Q Consensus 112 ~~~~~ 116 (742)
.++++
T Consensus 78 ~v~l~ 82 (82)
T PF05922_consen 78 VVSLH 82 (82)
T ss_dssp EEEE-
T ss_pred eEecC
Confidence 88763
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-07 Score=103.80 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=99.4
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCC----CCCCC
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEP----PLDDE 204 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~----~~d~~ 204 (742)
....|..+++|+++.|+|.|+|++..||+.... ....+.+++....+... .....
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~---------------------~~~~~s~d~~~~~~~p~~~~~~~~~~ 80 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN---------------------YDPLGSYDVNRHDNDPEPRCDGTNEN 80 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc---------------------cCcceeEeeecCCCCcccccCCCCcc
Confidence 556999999999999999999999999999842 22334444444332111 12357
Q ss_pred CCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhh-CCCcEEEEccCCCCCC-
Q 048043 205 GHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAID-DGVDVLSLSLGAASVP- 282 (742)
Q Consensus 205 gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~~VIn~SlG~~~~~- 282 (742)
.|||-|++-.+....+ .--..|+++++++..++++... .++...+...... .-.++-..|||.....
T Consensus 81 ~~g~~Ca~~~a~~~~~--------~~C~vg~~~~~~~~g~~~l~~~---v~~~~~~~~~~~~~~~~di~scsw~pddd~~ 149 (431)
T KOG3525|consen 81 KHGTRCAGCVAARANN--------LTCGVGVAYNATIGGIRMLAGC---VSDAVEAPSLGFGPCHIDIYSCSWGPDDDGK 149 (431)
T ss_pred ccCCCCCcccccccCC--------CcCCCCcccCccccceeeeeee---cccceecccccCCCCCceeecCcCCcccCCC
Confidence 8999999999977411 1112699999999999998642 1223333333333 3468999999975421
Q ss_pred ---CCCCHHHHHHHH-----hhcCCcEEEEecCCCCCCCC
Q 048043 283 ---FFEDPLAIGSFS-----AIQKEIFVSCSAGNEGPNPS 314 (742)
Q Consensus 283 ---~~~~~~~~a~~~-----a~~~Gi~vV~AAGN~g~~~~ 314 (742)
........+... ...+|-+.|+|.||.|....
T Consensus 150 t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 150 TCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred cCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 111222222222 23578899999999886643
|
|
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.6e-07 Score=83.36 Aligned_cols=88 Identities=22% Similarity=0.277 Sum_probs=70.8
Q ss_pred CCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCC-cccc---C----CCccccEEEEehhhHH
Q 048043 376 SAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNG-YSTL---A----DPHLLPAVHVSYAAGE 447 (742)
Q Consensus 376 ~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~-~~~~---~----~~~~~p~~~i~~~~g~ 447 (742)
.+.|.+.....+++|+|+|++||.|.|.+|..+++++||.++|++|+.... .... . ....+|+++|+..+|+
T Consensus 21 ~~gC~~~~~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG~ 100 (118)
T cd02127 21 LEACEELRNIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNGY 100 (118)
T ss_pred cccCCCCCCccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHHH
Confidence 467986433378999999999999999999999999999999999976542 1111 1 2347999999999999
Q ss_pred HHHHHHhcCCCCeEEE
Q 048043 448 SIKAYINSTSSPNATI 463 (742)
Q Consensus 448 ~l~~~~~~~~~~~~~i 463 (742)
.|++.+..+..+++.+
T Consensus 101 ~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 101 MIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHcCCceEEee
Confidence 9999999888776654
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.3e-07 Score=80.54 Aligned_cols=82 Identities=22% Similarity=0.419 Sum_probs=58.1
Q ss_pred CccEEEEEEEEeeCCCCceEEEEEEC--------CCC----------c-EEEEEcCeeEecCCCcEEEEEEEEEEcc-C-
Q 048043 656 STSQTYNRTVTNVGQAESSYTHKIVA--------PEG----------V-TVTVEPENISFTKKNQKAIYSITFTRSQ-K- 714 (742)
Q Consensus 656 ~~~~~~~~tv~n~~~~~~~y~~~~~~--------p~~----------~-~v~v~p~~~~~~~~g~~~~~~v~~~~~~-~- 714 (742)
+...+++++|+|.|+++.+|++++.. ..| . .+...|..++++| |++++++|+|+++. .
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~a-g~s~~v~vti~~p~~~~ 85 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPA-GQSKTVTVTITPPSGLD 85 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-T-TEEEEEEEEEE--GGGH
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECC-CCEEEEEEEEEehhcCC
Confidence 44689999999999999999998761 011 1 6777899999999 99999999999965 2
Q ss_pred -CCCceEEEEEEEEc-Cc-eEEEEeEE
Q 048043 715 -TSALFAQGYLSWVS-TK-HTVRSPIA 738 (742)
Q Consensus 715 -~~~~~~~G~i~~~~-~~-~~v~~p~~ 738 (742)
....+++|+|.+++ ++ ..+++||.
T Consensus 86 ~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 86 ASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp HTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred cccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 33589999999994 45 49999984
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.7e-07 Score=81.18 Aligned_cols=90 Identities=19% Similarity=0.294 Sum_probs=72.6
Q ss_pred CCceeEEecCCCCCCCCCCcCCCCCC-CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcc--cc--CCCc
Q 048043 360 SKQFPLIYPGANGNVSSAQCSPGSLS-SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYS--TL--ADPH 434 (742)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~--~~--~~~~ 434 (742)
...+|++.... ...|.+..+. .+++|+|+|++||.|+|.+|..+++.+||.++|++|+...... .. ....
T Consensus 19 ~~~~~~~~~~~-----~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v 93 (120)
T cd02129 19 ATLLPLRNLTS-----SVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKI 93 (120)
T ss_pred CcceeeecCCC-----cCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCC
Confidence 34577766654 3669988887 7899999999999999999999999999999999998753111 11 1345
Q ss_pred cccEEEEehhhHHHHHHHHh
Q 048043 435 LLPAVHVSYAAGESIKAYIN 454 (742)
Q Consensus 435 ~~p~~~i~~~~g~~l~~~~~ 454 (742)
.||+++|+..+|+.|++.+.
T Consensus 94 ~IP~v~Is~~dG~~i~~~l~ 113 (120)
T cd02129 94 DIPVALLSYKDMLDIQQTFG 113 (120)
T ss_pred cccEEEEeHHHHHHHHHHhc
Confidence 68999999999999998876
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.9e-07 Score=81.20 Aligned_cols=95 Identities=19% Similarity=0.237 Sum_probs=73.3
Q ss_pred eeEEecCCCCCCCCCCcCCCCCC-CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccc-cCCCccccEEE
Q 048043 363 FPLIYPGANGNVSSAQCSPGSLS-SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYST-LADPHLLPAVH 440 (742)
Q Consensus 363 ~~~~~~~~~~~~~~~~c~~~~~~-~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~-~~~~~~~p~~~ 440 (742)
+|++..........+.|.+.+.+ .+++|+|+|++||.|.+.+|..+++++|+.++|++|+.+..... ..+...+|.+.
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~ 107 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAV 107 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEE
Confidence 67666655555566889987777 78999999999999999999999999999999999886542211 12233456565
Q ss_pred EehhhHHHHHHHHhcCCC
Q 048043 441 VSYAAGESIKAYINSTSS 458 (742)
Q Consensus 441 i~~~~g~~l~~~~~~~~~ 458 (742)
+ ..+|+.|++.+..+..
T Consensus 108 ~-~~~G~~l~~~l~~G~~ 124 (129)
T cd02124 108 T-PEDGEAWIDALAAGSN 124 (129)
T ss_pred e-HHHHHHHHHHHhcCCe
Confidence 5 9999999999976654
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.2e-07 Score=84.35 Aligned_cols=87 Identities=16% Similarity=0.221 Sum_probs=71.0
Q ss_pred CCCCcCCCCC--C-CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcccc----CCCccccEEEEehhhHH
Q 048043 375 SSAQCSPGSL--S-SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTL----ADPHLLPAVHVSYAAGE 447 (742)
Q Consensus 375 ~~~~c~~~~~--~-~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~----~~~~~~p~~~i~~~~g~ 447 (742)
..+.|.+... . .++.|+|+|++||.|.|.+|..+++.+||.++|++|+...+...+ .....+|.++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 3567988877 4 789999999999999999999999999999999999876222111 12346899999999999
Q ss_pred HHHHHHhcCCCCeE
Q 048043 448 SIKAYINSTSSPNA 461 (742)
Q Consensus 448 ~l~~~~~~~~~~~~ 461 (742)
.|+.++.++.+.++
T Consensus 123 ~l~~~l~~G~~Vtv 136 (138)
T cd02122 123 EILELLERGISVTM 136 (138)
T ss_pred HHHHHHHcCCcEEE
Confidence 99999987765444
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.6e-07 Score=83.42 Aligned_cols=83 Identities=23% Similarity=0.408 Sum_probs=68.9
Q ss_pred CCCcCCCCCC-CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcc---ccC--CCccccEEEEehhhHHHH
Q 048043 376 SAQCSPGSLS-SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYS---TLA--DPHLLPAVHVSYAAGESI 449 (742)
Q Consensus 376 ~~~c~~~~~~-~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~---~~~--~~~~~p~~~i~~~~g~~l 449 (742)
.+.|.+..+. .+++|||+||+|+.|.+.+|..+++++||.++|++|+...... ... ....+|.++|+..+|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 4679888777 7899999999999999999999999999999999987663211 111 345699999999999999
Q ss_pred HHHHhcCCC
Q 048043 450 KAYINSTSS 458 (742)
Q Consensus 450 ~~~~~~~~~ 458 (742)
++++.++.+
T Consensus 109 ~~~l~~g~~ 117 (122)
T cd04816 109 RRRLGAGET 117 (122)
T ss_pred HHHHcCCCE
Confidence 999976654
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.3e-07 Score=81.38 Aligned_cols=86 Identities=27% Similarity=0.405 Sum_probs=69.6
Q ss_pred CCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcc-cc---CCCccccEEEEehhhHHHHH
Q 048043 375 SSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYS-TL---ADPHLLPAVHVSYAAGESIK 450 (742)
Q Consensus 375 ~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~-~~---~~~~~~p~~~i~~~~g~~l~ 450 (742)
..+.|.+.....+++|||+||+|+.|.+.+|..+++.+|+.++|++++...... .. .....+|.+.|+.++|..|+
T Consensus 26 ~~~~C~~~~~~~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~ 105 (118)
T cd04818 26 NTDGCTAFTNAAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALK 105 (118)
T ss_pred cccccCCCCcCCCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHH
Confidence 456798877766699999999999999999999999999999999987664211 11 12357999999999999999
Q ss_pred HHHhcCCCCe
Q 048043 451 AYINSTSSPN 460 (742)
Q Consensus 451 ~~~~~~~~~~ 460 (742)
+|+..+...+
T Consensus 106 ~~l~~g~~v~ 115 (118)
T cd04818 106 AALAAGGTVT 115 (118)
T ss_pred HHHhcCCcEE
Confidence 9998766433
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-06 Score=79.64 Aligned_cols=85 Identities=20% Similarity=0.242 Sum_probs=66.8
Q ss_pred CCCcCCCCCC--C-----CccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccc-----------cCCCcccc
Q 048043 376 SAQCSPGSLS--S-----NIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYST-----------LADPHLLP 437 (742)
Q Consensus 376 ~~~c~~~~~~--~-----~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~-----------~~~~~~~p 437 (742)
.+.|.+.... . ...++|+|++||+|.|.+|..+++.+||.++|++|+.+..... ..+...+|
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 3568766553 2 3788999999999999999999999999999999986532110 11234699
Q ss_pred EEEEehhhHHHHHHHHhcCCCCe
Q 048043 438 AVHVSYAAGESIKAYINSTSSPN 460 (742)
Q Consensus 438 ~~~i~~~~g~~l~~~~~~~~~~~ 460 (742)
+++|+..+|+.|+..+..+...+
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~ 124 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVV 124 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEE
Confidence 99999999999999998776443
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-06 Score=102.11 Aligned_cols=93 Identities=22% Similarity=0.241 Sum_probs=58.4
Q ss_pred eeecCcceEEEEEEeccCCCCHHHHHHHHHHhhhCCC-cEEEEccCCCC-----CCCCCCHHHHHHHHhhcCCcEEEEec
Q 048043 233 VGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGV-DVLSLSLGAAS-----VPFFEDPLAIGSFSAIQKEIFVSCSA 306 (742)
Q Consensus 233 ~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~-~VIn~SlG~~~-----~~~~~~~~~~a~~~a~~~Gi~vV~AA 306 (742)
.-+||+|+|..|-. +. ........|+.+....=+ -++-.||+... .+..-+.++.....|..+|+.+++|+
T Consensus 289 ~A~AP~A~I~lvva--p~-~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~AAS 365 (1174)
T COG4934 289 HAMAPKANIDLVVA--PN-PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFAAS 365 (1174)
T ss_pred hccCccCceEEEEc--CC-CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEEec
Confidence 68999999999876 22 222223333333222211 33445666532 11133445555667889999999999
Q ss_pred CCCCCCCCC--------CCCCCCceEEecc
Q 048043 307 GNEGPNPST--------SSNEAPWILSVGA 328 (742)
Q Consensus 307 GN~g~~~~~--------~~~~~p~vitVga 328 (742)
|.+|....+ .++.+|++++||.
T Consensus 366 GD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 366 GDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ccccccCCCcccceeecccCCCccEEeecC
Confidence 999866543 4578999999998
|
|
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-06 Score=80.41 Aligned_cols=84 Identities=24% Similarity=0.349 Sum_probs=66.9
Q ss_pred CCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCC-----ccc--c-----CCCccccEEEEeh
Q 048043 376 SAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNG-----YST--L-----ADPHLLPAVHVSY 443 (742)
Q Consensus 376 ~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~-----~~~--~-----~~~~~~p~~~i~~ 443 (742)
...|.+.....+++|||+|++||.|.|.+|..+++.+|+.++|++|+.... ... . .+...+|+++|+.
T Consensus 27 ~~gC~~~~~~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~~ 106 (126)
T cd02126 27 YRACSEITNAEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLFS 106 (126)
T ss_pred hhcccCCCCccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEEH
Confidence 356976554467899999999999999999999999999999999875432 111 1 1245789999999
Q ss_pred hhHHHHHHHHhcCCCC
Q 048043 444 AAGESIKAYINSTSSP 459 (742)
Q Consensus 444 ~~g~~l~~~~~~~~~~ 459 (742)
.+|+.|++.+..+...
T Consensus 107 ~dG~~L~~~l~~~~~~ 122 (126)
T cd02126 107 KEGSKLLAAIKEHQNV 122 (126)
T ss_pred HHHHHHHHHHHhCCce
Confidence 9999999999876543
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.7e-07 Score=80.33 Aligned_cols=76 Identities=37% Similarity=0.590 Sum_probs=60.6
Q ss_pred CcCCCCCC-CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCC----CCccccCCCccccEEEEehhhHHHHHHH
Q 048043 378 QCSPGSLS-SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKL----NGYSTLADPHLLPAVHVSYAAGESIKAY 452 (742)
Q Consensus 378 ~c~~~~~~-~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~----~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 452 (742)
.|...... .+++|||+||+||.|.+.+|..+++.+||.++|+++... ...........+|+++|+.++|+.|++|
T Consensus 21 ~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~~~ 100 (101)
T PF02225_consen 21 DCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALLAY 100 (101)
T ss_dssp HHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHHHH
T ss_pred cccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhhcc
Confidence 35555666 889999999999999999999999999999999999211 1222334467899999999999999988
Q ss_pred H
Q 048043 453 I 453 (742)
Q Consensus 453 ~ 453 (742)
+
T Consensus 101 i 101 (101)
T PF02225_consen 101 I 101 (101)
T ss_dssp H
T ss_pred C
Confidence 5
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.8e-06 Score=78.89 Aligned_cols=85 Identities=21% Similarity=0.324 Sum_probs=67.9
Q ss_pred CCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcc----ccCCCccccEEEEehhhHHHHHHH
Q 048043 377 AQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYS----TLADPHLLPAVHVSYAAGESIKAY 452 (742)
Q Consensus 377 ~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~----~~~~~~~~p~~~i~~~~g~~l~~~ 452 (742)
..|.+..+..+++|||+|++|+.|.+.+|..+++.+||.++|++|+...+.. ...+...+|.+.|+.++|+.|++.
T Consensus 32 ~gC~~~~~~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~~ 111 (122)
T cd02130 32 LGCDAADYPASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVAA 111 (122)
T ss_pred CCCCcccCCcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHHH
Confidence 3587654445799999999999999999999999999999999988733221 112345799999999999999999
Q ss_pred HhcCCCCeE
Q 048043 453 INSTSSPNA 461 (742)
Q Consensus 453 ~~~~~~~~~ 461 (742)
+.++.+.++
T Consensus 112 l~~g~~v~~ 120 (122)
T cd02130 112 LANGGEVSA 120 (122)
T ss_pred HhcCCcEEE
Confidence 987765443
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.8e-06 Score=77.91 Aligned_cols=83 Identities=27% Similarity=0.460 Sum_probs=67.7
Q ss_pred CCCcCCCC--CC-CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCC-ccc-c----CCCccccEEEEehhhH
Q 048043 376 SAQCSPGS--LS-SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNG-YST-L----ADPHLLPAVHVSYAAG 446 (742)
Q Consensus 376 ~~~c~~~~--~~-~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~-~~~-~----~~~~~~p~~~i~~~~g 446 (742)
...|.+.. +. .+++|||+||+|+.|.+.+|..+++.+||.|+|++++.... ... . .....+|.+.|+.++|
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g 109 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADG 109 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHH
Confidence 34587776 55 78999999999999999999999999999999999887532 111 1 1345799999999999
Q ss_pred HHHHHHHhcCCC
Q 048043 447 ESIKAYINSTSS 458 (742)
Q Consensus 447 ~~l~~~~~~~~~ 458 (742)
..|++++.++.+
T Consensus 110 ~~l~~~~~~~~~ 121 (126)
T cd00538 110 EALLSLLEAGKT 121 (126)
T ss_pred HHHHHHHhcCCc
Confidence 999999987554
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.28 E-value=4e-06 Score=78.22 Aligned_cols=82 Identities=23% Similarity=0.462 Sum_probs=66.1
Q ss_pred CCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcccc------CCCccccEEEEehhhHHHH
Q 048043 376 SAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTL------ADPHLLPAVHVSYAAGESI 449 (742)
Q Consensus 376 ~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~------~~~~~~p~~~i~~~~g~~l 449 (742)
.+.|.+.. .+++|+|+|++||.|.|.+|..+++++||.++|++|+........ .....+|+++|+..+|+.|
T Consensus 48 ~~gC~~~~--~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L 125 (139)
T cd02132 48 LDCCSPST--SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDAL 125 (139)
T ss_pred ccccCCCC--cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHHH
Confidence 46787654 478999999999999999999999999999999998764321111 1135799999999999999
Q ss_pred HHHHhcCCCC
Q 048043 450 KAYINSTSSP 459 (742)
Q Consensus 450 ~~~~~~~~~~ 459 (742)
++.+..+...
T Consensus 126 ~~~l~~g~~V 135 (139)
T cd02132 126 NKSLDQGKKV 135 (139)
T ss_pred HHHHHcCCcE
Confidence 9999876643
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.3e-06 Score=75.26 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=64.4
Q ss_pred CCCCcCCCCCC-CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcc--cc----CCCccccEEEEehhhHH
Q 048043 375 SSAQCSPGSLS-SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYS--TL----ADPHLLPAVHVSYAAGE 447 (742)
Q Consensus 375 ~~~~c~~~~~~-~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~--~~----~~~~~~p~~~i~~~~g~ 447 (742)
..+.|.+. + .+++|+|+|++||+|.|.+|..+++.+||.++|++|+...... .. .....+|+++|+..+++
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 34679765 5 8899999999999999999999999999999999987653211 11 23357999999999999
Q ss_pred HHHHHHhc
Q 048043 448 SIKAYINS 455 (742)
Q Consensus 448 ~l~~~~~~ 455 (742)
.|+.++..
T Consensus 104 ~L~~l~~~ 111 (117)
T cd04813 104 LLSSLLPK 111 (117)
T ss_pred HHHHhccc
Confidence 99988754
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.3e-06 Score=76.11 Aligned_cols=70 Identities=30% Similarity=0.523 Sum_probs=58.6
Q ss_pred CCccceEEEeecCCcc-----hhhhhHHHhhcCCeEEEEeccCC-CCcc--ccCC---CccccEEEEehhhHHHHHHHHh
Q 048043 386 SNIRGKLVLCERGGGE-----RTKKGQVVKDAGGIGMILMNDKL-NGYS--TLAD---PHLLPAVHVSYAAGESIKAYIN 454 (742)
Q Consensus 386 ~~~~g~iv~~~~g~~~-----~~~~~~~~~~~g~~~~i~~~~~~-~~~~--~~~~---~~~~p~~~i~~~~g~~l~~~~~ 454 (742)
.+++|||+|++||.|. |.+|..+++++||.++|+||+.. .+.. ...+ ...+|++.|+..+|+.|+..+.
T Consensus 53 ~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~~l~ 132 (139)
T cd04817 53 GGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLAALG 132 (139)
T ss_pred CCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHHHhc
Confidence 5789999999999999 99999999999999999999973 2211 1122 4589999999999999999885
Q ss_pred c
Q 048043 455 S 455 (742)
Q Consensus 455 ~ 455 (742)
.
T Consensus 133 ~ 133 (139)
T cd04817 133 Q 133 (139)
T ss_pred C
Confidence 3
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.4e-05 Score=75.75 Aligned_cols=83 Identities=25% Similarity=0.287 Sum_probs=67.1
Q ss_pred CCCcCCCCC---C-CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcc-ccC-----CCccccEEEEehhh
Q 048043 376 SAQCSPGSL---S-SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYS-TLA-----DPHLLPAVHVSYAA 445 (742)
Q Consensus 376 ~~~c~~~~~---~-~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~-~~~-----~~~~~p~~~i~~~~ 445 (742)
.+.|.+... + ..+.|+|+|++||.|.|.+|..+++.+||.++|++|+...... ... ....+|+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 457876654 3 6889999999999999999999999999999999998653221 111 14589999999999
Q ss_pred HHHHHHHHhcCCC
Q 048043 446 GESIKAYINSTSS 458 (742)
Q Consensus 446 g~~l~~~~~~~~~ 458 (742)
|+.|+.++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999976653
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0004 Score=63.76 Aligned_cols=90 Identities=18% Similarity=0.254 Sum_probs=68.1
Q ss_pred CCceeEEecCCCCCCCCCCcCCCCCC-CCccceEEEeecCCc--chhhhhHHHhhcCCeEEEEeccCCCCccc-----c-
Q 048043 360 SKQFPLIYPGANGNVSSAQCSPGSLS-SNIRGKLVLCERGGG--ERTKKGQVVKDAGGIGMILMNDKLNGYST-----L- 430 (742)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~g~iv~~~~g~~--~~~~~~~~~~~~g~~~~i~~~~~~~~~~~-----~- 430 (742)
....+++|.+... ..++. .+++|||++++++.+ .+.+|..++..+||.++|++++....... .
T Consensus 22 ~~~~~lV~~g~G~--------~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~ 93 (127)
T cd04819 22 EAKGEPVDAGYGL--------PKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTE 93 (127)
T ss_pred CeeEEEEEeCCCC--------HHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccccccc
Confidence 3467788876431 12233 569999999999999 88999999999999999999865442211 1
Q ss_pred -CCCccccEEEEehhhHHHHHHHHhcCC
Q 048043 431 -ADPHLLPAVHVSYAAGESIKAYINSTS 457 (742)
Q Consensus 431 -~~~~~~p~~~i~~~~g~~l~~~~~~~~ 457 (742)
.....+|++.|+.++|+.|.+.++.+.
T Consensus 94 ~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 94 DGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred CCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 223579999999999999999997643
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0015 Score=60.52 Aligned_cols=74 Identities=11% Similarity=0.179 Sum_probs=58.7
Q ss_pred CCccceEEEeecCCc------chhhh-------hHHHhhcCCeEEEEeccCC-------CCcccc-CCCccccEEEEehh
Q 048043 386 SNIRGKLVLCERGGG------ERTKK-------GQVVKDAGGIGMILMNDKL-------NGYSTL-ADPHLLPAVHVSYA 444 (742)
Q Consensus 386 ~~~~g~iv~~~~g~~------~~~~~-------~~~~~~~g~~~~i~~~~~~-------~~~~~~-~~~~~~p~~~i~~~ 444 (742)
.+++|||+++.++.| .+..| ...+.++||.++|+++... .+.... .....+|++.|+.+
T Consensus 36 ~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~e 115 (134)
T cd04815 36 GAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISVE 115 (134)
T ss_pred hhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEechh
Confidence 578999999999999 88777 6899999999999998642 222222 22346999999999
Q ss_pred hHHHHHHHHhcCCCC
Q 048043 445 AGESIKAYINSTSSP 459 (742)
Q Consensus 445 ~g~~l~~~~~~~~~~ 459 (742)
++..|...+..+...
T Consensus 116 d~~~L~r~l~~g~~v 130 (134)
T cd04815 116 DADMLERLAARGKPI 130 (134)
T ss_pred cHHHHHHHHhCCCCe
Confidence 999999998876543
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.033 Score=48.79 Aligned_cols=82 Identities=13% Similarity=0.155 Sum_probs=65.6
Q ss_pred CccEEEEEEEEeeCCCCceEEEEEECCCCcEEEEEcCeeEecCCCcEEEEEEEEEEccCCCCceEEEEEEEEcCceEEEE
Q 048043 656 STSQTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRSQKTSALFAQGYLSWVSTKHTVRS 735 (742)
Q Consensus 656 ~~~~~~~~tv~n~~~~~~~y~~~~~~p~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~~~~~~v~~ 735 (742)
+...+.+++|+|.|..+..|++..........+++|..-.+.| |++.+++|+|.+.... +.+.+.|.+..++..+.+
T Consensus 19 g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~P-G~~~~~~V~~~~~~~~--g~~~~~l~i~~e~~~~~i 95 (102)
T PF14874_consen 19 GQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAP-GESVELEVTFSPTKPL--GDYEGSLVITTEGGSFEI 95 (102)
T ss_pred CCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECC-CCEEEEEEEEEeCCCC--ceEEEEEEEEECCeEEEE
Confidence 4467788999999999999998765433456778888878888 9999999999975543 468899998877778888
Q ss_pred eEEEE
Q 048043 736 PIAVR 740 (742)
Q Consensus 736 p~~v~ 740 (742)
|+-..
T Consensus 96 ~v~a~ 100 (102)
T PF14874_consen 96 PVKAE 100 (102)
T ss_pred EEEEE
Confidence 88665
|
|
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.014 Score=56.48 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=55.3
Q ss_pred CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccc-------------cC---------------------
Q 048043 386 SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYST-------------LA--------------------- 431 (742)
Q Consensus 386 ~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~-------------~~--------------------- 431 (742)
.+++|||+|+++|.|.+.+|..+++.+||+|+|+|++..+.... ..
T Consensus 52 v~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~ 131 (183)
T cd02128 52 VSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQSS 131 (183)
T ss_pred CCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCccccc
Confidence 47899999999999999999999999999999999874211000 00
Q ss_pred CCccccEEEEehhhHHHHHHHHhc
Q 048043 432 DPHLLPAVHVSYAAGESIKAYINS 455 (742)
Q Consensus 432 ~~~~~p~~~i~~~~g~~l~~~~~~ 455 (742)
.-..||+.-|+..++..|+..+.-
T Consensus 132 ~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 132 GLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred CCCCCCEeccCHHHHHHHHHHcCC
Confidence 013588999999999999998853
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.008 Score=54.97 Aligned_cols=102 Identities=20% Similarity=0.207 Sum_probs=76.8
Q ss_pred CceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccc------cC---
Q 048043 361 KQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYST------LA--- 431 (742)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~------~~--- 431 (742)
..+++|.+.. ..+|......-...+.+++++||+|+|..|..++.++||.++|+.++.....+. +.
T Consensus 64 e~~~lV~adP-----p~aC~elrN~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~s 138 (193)
T KOG3920|consen 64 ENLELVLADP-----PHACEELRNEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDES 138 (193)
T ss_pred cCcceeecCC-----hhHHHHHhhcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCccc
Confidence 3466666653 466876554467889999999999999999999999999999998775543322 22
Q ss_pred -CCccccEEEEehhhHHHHHHHHhcCCCCeEEEEece
Q 048043 432 -DPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKG 467 (742)
Q Consensus 432 -~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 467 (742)
+...+|++++-..+|..++.-+......-+.|..+-
T Consensus 139 q~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IPV 175 (193)
T KOG3920|consen 139 QDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIPV 175 (193)
T ss_pred ccccCCceEEEeccceEEEehhHHHhCCccEEEeccc
Confidence 356899999999999887777776666666665544
|
|
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.027 Score=52.29 Aligned_cols=63 Identities=21% Similarity=0.331 Sum_probs=50.4
Q ss_pred CCceeEEecCCCCCCCCCCcCCCCCC-CCccceEEEeecCCc------------------chhhhhHHHhhcCCeEEEEe
Q 048043 360 SKQFPLIYPGANGNVSSAQCSPGSLS-SNIRGKLVLCERGGG------------------ERTKKGQVVKDAGGIGMILM 420 (742)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~g~iv~~~~g~~------------------~~~~~~~~~~~~g~~~~i~~ 420 (742)
....|+||.+.... ...|...++. .+++||||++.++.| .+..|..++..+||.|+|++
T Consensus 19 ~~~aelVfvGyGi~--a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii 96 (142)
T cd04814 19 IKDAPLVFVGYGIK--APELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIV 96 (142)
T ss_pred ccceeeEEecCCcC--CCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 34678888875432 2457777777 799999999999877 46679999999999999999
Q ss_pred ccCC
Q 048043 421 NDKL 424 (742)
Q Consensus 421 ~~~~ 424 (742)
++..
T Consensus 97 ~~~~ 100 (142)
T cd04814 97 HELA 100 (142)
T ss_pred eCCC
Confidence 9865
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.039 Score=59.78 Aligned_cols=79 Identities=23% Similarity=0.413 Sum_probs=64.6
Q ss_pred CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCC------CccccCCCccccEEEEehhhHHHHHHHHhcCCCC
Q 048043 386 SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLN------GYSTLADPHLLPAVHVSYAAGESIKAYINSTSSP 459 (742)
Q Consensus 386 ~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~------~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 459 (742)
..++++++++.||.|.|.+|.+.++++||.+.+++|+..+ ++........||.++|..++++.+..-..++.+.
T Consensus 92 ~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V 171 (541)
T KOG2442|consen 92 SKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNV 171 (541)
T ss_pred ccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeE
Confidence 6789999999999999999999999999999999998543 2222334568999999999999999877666665
Q ss_pred eEEEE
Q 048043 460 NATIV 464 (742)
Q Consensus 460 ~~~i~ 464 (742)
++.+.
T Consensus 172 ~~~lY 176 (541)
T KOG2442|consen 172 ELALY 176 (541)
T ss_pred EEEEE
Confidence 55554
|
|
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.036 Score=51.16 Aligned_cols=63 Identities=24% Similarity=0.441 Sum_probs=49.4
Q ss_pred CceeEEecCCCCCCCCCCcCCCCCC-CCccceEEEeecCCcc------------hhhhhHHHhhcCCeEEEEeccCCC
Q 048043 361 KQFPLIYPGANGNVSSAQCSPGSLS-SNIRGKLVLCERGGGE------------RTKKGQVVKDAGGIGMILMNDKLN 425 (742)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~g~iv~~~~g~~~------------~~~~~~~~~~~g~~~~i~~~~~~~ 425 (742)
..-++||.+.... ...|...++. .+++|||||+.++.|. +.+|..++...||.++|++++...
T Consensus 22 v~gelVfvGyG~~--~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 22 VEAPLVFVGYGLV--APELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred ceEeEEEecCCcC--ccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 3567777775432 2457777776 8999999999998873 568999999999999999988543
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.073 Score=50.06 Aligned_cols=62 Identities=18% Similarity=0.313 Sum_probs=47.3
Q ss_pred ceeEEecCCCCCCCCCCcCCCCCC-CCccceEEEeecCC------------------cchhhhhHHHhhcCCeEEEEecc
Q 048043 362 QFPLIYPGANGNVSSAQCSPGSLS-SNIRGKLVLCERGG------------------GERTKKGQVVKDAGGIGMILMND 422 (742)
Q Consensus 362 ~~~~~~~~~~~~~~~~~c~~~~~~-~~~~g~iv~~~~g~------------------~~~~~~~~~~~~~g~~~~i~~~~ 422 (742)
.-++||.+.... ...|....+. .+++|||||+.++. |.+..|..++...|++++|++++
T Consensus 21 tg~lVfvGyGi~--~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d 98 (151)
T cd04822 21 TAPVVFAGYGIT--APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNG 98 (151)
T ss_pred eEeEEEecCCcC--ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeC
Confidence 467777765432 3457666665 78999999998764 45678999999999999999998
Q ss_pred CCC
Q 048043 423 KLN 425 (742)
Q Consensus 423 ~~~ 425 (742)
...
T Consensus 99 ~~~ 101 (151)
T cd04822 99 PNS 101 (151)
T ss_pred Ccc
Confidence 644
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.22 Score=41.32 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=38.0
Q ss_pred CccEEEEEEEEeeCCCC-ceEEEEEECCCCcEEEEEcCeeE-ecCCCcEEEEEEEEEEccC
Q 048043 656 STSQTYNRTVTNVGQAE-SSYTHKIVAPEGVTVTVEPENIS-FTKKNQKAIYSITFTRSQK 714 (742)
Q Consensus 656 ~~~~~~~~tv~n~~~~~-~~y~~~~~~p~~~~v~v~p~~~~-~~~~g~~~~~~v~~~~~~~ 714 (742)
+...+++.+|+|.|..+ ...+++...|.|-.+...|..+. +.+ |++++++++|+++..
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~p-G~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPP-GESVTVTFTVTVPAD 63 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-T-TSEEEEEEEEEE-TT
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCC-CCEEEEEEEEECCCC
Confidence 34688999999999765 45888888999988777887764 555 999999999999854
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.81 Score=41.23 Aligned_cols=82 Identities=10% Similarity=0.064 Sum_probs=51.1
Q ss_pred cEEEEEEEEeeCCCCceEEEEEECCCCcEEEEEcCeeEecCCCcEEEEEEEEEEccCCC-CceEEEEEEEE--cCceEEE
Q 048043 658 SQTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRSQKTS-ALFAQGYLSWV--STKHTVR 734 (742)
Q Consensus 658 ~~~~~~tv~n~~~~~~~y~~~~~~p~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~-~~~~~G~i~~~--~~~~~v~ 734 (742)
...+++.|+|.+..+.+|++++..++++.+......+++.+ |++.++.|.+..+.... ..-..=.+.+. +++..++
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~-g~~~~~~v~v~~p~~~~~~~~~~i~f~v~~~~~~~~~~ 110 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPP-GETREVPVFVTAPPDALKSGSTPITFTVTDDDGGEIIT 110 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-T-T-EEEEEEEEEE-GGG-SSSEEEEEEEEEEGGGTEEEE
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECC-CCEEEEEEEEEECHHHccCCCeeEEEEEEECCCCEEEE
Confidence 67889999999999999999999988999866558899988 99999999999985421 11112222332 3455555
Q ss_pred EeEEEE
Q 048043 735 SPIAVR 740 (742)
Q Consensus 735 ~p~~v~ 740 (742)
....+.
T Consensus 111 ~~s~F~ 116 (118)
T PF11614_consen 111 YKSTFI 116 (118)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 554443
|
|
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.14 Score=47.63 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=36.0
Q ss_pred CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCC
Q 048043 386 SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKL 424 (742)
Q Consensus 386 ~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~ 424 (742)
-+++|||++++.|...+..|..+++..|++|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 468999999999999999999999999999999998753
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.39 Score=51.02 Aligned_cols=78 Identities=23% Similarity=0.202 Sum_probs=61.8
Q ss_pred CCcCCCCCC----CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccC----CCccccEEEEehhhHHH
Q 048043 377 AQCSPGSLS----SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLA----DPHLLPAVHVSYAAGES 448 (742)
Q Consensus 377 ~~c~~~~~~----~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~----~~~~~p~~~i~~~~g~~ 448 (742)
++|.+.... ......++++.||+|.|.+|..+++.+|..++|++|+......... ....++.++++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 567665441 5677889999999999999999999999999999998765543322 34568889999999998
Q ss_pred HHHHHh
Q 048043 449 IKAYIN 454 (742)
Q Consensus 449 l~~~~~ 454 (742)
|..|..
T Consensus 143 l~~~~~ 148 (348)
T KOG4628|consen 143 LSSYAG 148 (348)
T ss_pred HHHhhc
Confidence 888753
|
|
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=92.02 E-value=1.4 Score=39.88 Aligned_cols=77 Identities=17% Similarity=0.228 Sum_probs=54.3
Q ss_pred ceeeeeC-CccEEEEEEEEeeCCCCceEEEEEEC----CCC--------------------cEEEEEcCeeEecCCCcEE
Q 048043 649 SFSVILG-STSQTYNRTVTNVGQAESSYTHKIVA----PEG--------------------VTVTVEPENISFTKKNQKA 703 (742)
Q Consensus 649 s~~~~~~-~~~~~~~~tv~n~~~~~~~y~~~~~~----p~~--------------------~~v~v~p~~~~~~~~g~~~ 703 (742)
.|.+... +..++++++|+|.++++.+|.+.+.. ..| --+++ |..+++++ ++++
T Consensus 18 YFdL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl~~-~~sk 95 (121)
T PF06030_consen 18 YFDLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTLPP-NESK 95 (121)
T ss_pred eEEEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEECC-CCEE
Confidence 3444433 45899999999999999999987651 111 11222 55588888 9999
Q ss_pred EEEEEEEEccCCCCceEEEEEEEE
Q 048043 704 IYSITFTRSQKTSALFAQGYLSWV 727 (742)
Q Consensus 704 ~~~v~~~~~~~~~~~~~~G~i~~~ 727 (742)
+++++++.+...-.+.+-|.|.+.
T Consensus 96 ~V~~~i~~P~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 96 TVTFTIKMPKKAFDGIILGGIYFS 119 (121)
T ss_pred EEEEEEEcCCCCcCCEEEeeEEEE
Confidence 999999998764436777777664
|
|
| >PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors | Back alignment and domain information |
|---|
Probab=91.85 E-value=3.4 Score=37.32 Aligned_cols=71 Identities=13% Similarity=0.064 Sum_probs=47.5
Q ss_pred CCccEEEEEEEEeeCCCCceEEEEEEC---CC----CcEEEEEcCeeEecCCCcEEEEEEEEEEccCCCCceEEEEEEEE
Q 048043 655 GSTSQTYNRTVTNVGQAESSYTHKIVA---PE----GVTVTVEPENISFTKKNQKAIYSITFTRSQKTSALFAQGYLSWV 727 (742)
Q Consensus 655 ~~~~~~~~~tv~n~~~~~~~y~~~~~~---p~----~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~ 727 (742)
.....+.+++|+|.++.+..+.+.+.. .. .-.+.++|..+++.+ |+++++.| +.....+...-..=+|.+.
T Consensus 12 ~~~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~p-g~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 12 NESQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEP-GESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp ETTSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEET-TEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred eCCCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCC-CCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 334567789999999877777777653 11 125779999999999 99999999 7744432222333345443
|
Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B .... |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.29 Score=49.12 Aligned_cols=39 Identities=31% Similarity=0.500 Sum_probs=36.1
Q ss_pred CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCC
Q 048043 386 SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKL 424 (742)
Q Consensus 386 ~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~ 424 (742)
.+++|||+|++++.+.+.+|..+++.+||+|+|++++..
T Consensus 68 vdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 68 IDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 579999999999999889999999999999999998854
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.00 E-value=4.7 Score=44.30 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=58.7
Q ss_pred CccEEEEEEEEeeCCCCce-EEEEEECCCCcEEEEEcCeeEecCCCcEEEEEEEEEEccCCCCceEEEEEEEEc
Q 048043 656 STSQTYNRTVTNVGQAESS-YTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRSQKTSALFAQGYLSWVS 728 (742)
Q Consensus 656 ~~~~~~~~tv~n~~~~~~~-y~~~~~~p~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~~ 728 (742)
+..++....+.|.|+.+.| -++++..|.|-++.|.|.++-.-++|++.++++|++++.....+-|+=.|.-++
T Consensus 396 Gee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ks 469 (513)
T COG1470 396 GEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAKS 469 (513)
T ss_pred CccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEee
Confidence 4478999999999987655 678999999999999998765555699999999999996544366776776653
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.66 E-value=0.46 Score=55.69 Aligned_cols=24 Identities=38% Similarity=0.808 Sum_probs=22.5
Q ss_pred CCCCCccEEEEEcccCCCCCCCCC
Q 048043 136 SNLGKGVIIGVMDTGITPGHPSFS 159 (742)
Q Consensus 136 ~~~G~gV~VaVIDtGid~~Hp~f~ 159 (742)
.|.|+||+|||+|||+|+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 589999999999999999999887
|
|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=85.43 E-value=3.9 Score=38.87 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=42.0
Q ss_pred CCceeEEecCCCCCCCCCCcCCCCCC-CCccceEEEeecCCcc-------------------hhhhhHHHhhcCCeEEEE
Q 048043 360 SKQFPLIYPGANGNVSSAQCSPGSLS-SNIRGKLVLCERGGGE-------------------RTKKGQVVKDAGGIGMIL 419 (742)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~g~iv~~~~g~~~-------------------~~~~~~~~~~~g~~~~i~ 419 (742)
...-++||.+....... -...++. .|++||||++.++... ...|...+...||.|+|+
T Consensus 21 ~~~~elVFvGyGi~ape--~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~ 98 (157)
T cd04821 21 LKDSPLVFVGYGIVAPE--YGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALI 98 (157)
T ss_pred cccCCEEEeccCccCcc--cCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEE
Confidence 34567777775533211 1112334 7899999999876542 224899999999999999
Q ss_pred eccC
Q 048043 420 MNDK 423 (742)
Q Consensus 420 ~~~~ 423 (742)
+.+.
T Consensus 99 v~~~ 102 (157)
T cd04821 99 VHET 102 (157)
T ss_pred EeCC
Confidence 9764
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm | Back alignment and domain information |
|---|
Probab=80.36 E-value=9.3 Score=33.45 Aligned_cols=53 Identities=21% Similarity=0.245 Sum_probs=41.5
Q ss_pred cEEEEEEEEeeCCCCceEEEEEECCCCcEEEEEcCeeEecCCCcEEEEEEEEEEcc
Q 048043 658 SQTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRSQ 713 (742)
Q Consensus 658 ~~~~~~tv~n~~~~~~~y~~~~~~p~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~ 713 (742)
..+.+++|+|.++...-|++....|... .|.|..-.+.+ |+++++.|++.+..
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~y--~v~P~~G~i~p-~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNRY--RVKPSYGIIEP-GESVEITITFQPFD 71 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTTE--EEESSEEEE-T-TEEEEEEEEE-SSS
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCceE--EecCCCEEECC-CCEEEEEEEEEecc
Confidence 5788899999999999999998888765 46799988988 99999999999853
|
These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 742 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-113 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 1e-109 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 5e-14 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 8e-14 | ||
| 1xf1_A | 926 | Structure Of C5a Peptidase- A Key Virulence Factor | 3e-11 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 8e-08 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 8e-08 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 8e-08 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 8e-08 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 8e-08 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 9e-08 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 1e-07 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 1e-07 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 2e-07 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 2e-07 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 2e-07 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 2e-07 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 2e-07 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 2e-07 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 3e-07 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 3e-07 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 3e-07 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 3e-07 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 4e-07 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 4e-07 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 4e-07 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 4e-07 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 4e-07 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 4e-07 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 7e-07 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 8e-07 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 8e-07 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 9e-07 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 9e-07 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 1e-06 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 1e-06 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 1e-06 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 1e-06 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 1e-06 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 1e-06 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 1e-06 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 1e-06 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 1e-06 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 1e-06 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 1e-06 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 2e-06 | ||
| 4dzt_A | 276 | Aqualysin I: The Crystal Structure Of A Serine Prot | 2e-06 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 3e-06 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 4e-06 | ||
| 2b6n_A | 278 | The 1.8 A Crystal Structure Of A Proteinase K Like | 4e-06 | ||
| 1sel_A | 274 | Crystal Structure Of Selenosubtilisin At 2.0-Angstr | 4e-06 | ||
| 1v6c_A | 441 | Crystal Structure Of Psychrophilic Subtilisin-like | 1e-05 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 2e-05 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 6e-05 | ||
| 1dbi_A | 280 | Crystal Structure Of A Thermostable Serine Protease | 9e-05 | ||
| 2z56_A | 318 | Crystal Structure Of G56s-Propeptide:s324a-Subtilis | 2e-04 | ||
| 2z30_A | 320 | Crystal Structure Of Complex Form Between Mat-Tk-Su | 2e-04 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 2e-04 | ||
| 2zrq_A | 329 | Crystal Structure Of S324a-Subtilisin Length = 329 | 2e-04 | ||
| 2e1p_A | 398 | Crystal Structure Of Pro-Tk-Subtilisin Length = 398 | 2e-04 | ||
| 3a3p_A | 329 | Crystal Structure Of Complex Between E201aSA-Subtil | 2e-04 | ||
| 2z2z_A | 395 | Crystal Structure Of Unautoprocessed Form Of Tk-sub | 2e-04 | ||
| 3vhq_A | 398 | Crystal Structure Of The Ca6 Site Mutant Of Pro-Sa- | 2e-04 | ||
| 2zwp_A | 398 | Crystal Structure Of Ca3 Site Mutant Of Pro-S324a L | 2e-04 | ||
| 2zwo_A | 398 | Crystal Structure Of Ca2 Site Mutant Of Pro-S324a L | 2e-04 | ||
| 2z2x_A | 318 | Crystal Structure Of Mature Form Of Tk-Subtilisin L | 2e-04 | ||
| 2z2y_A | 318 | Crystal Structure Of Autoprocessed Form Of Tk-Subti | 3e-04 | ||
| 1thm_A | 279 | Crystal Structure Of Thermitase At 1.4 Angstroms Re | 3e-04 | ||
| 1r6v_A | 671 | Crystal Structure Of Fervidolysin From Fervidobacte | 5e-04 | ||
| 1tec_E | 279 | Crystallographic Refinement By Incorporation Of Mol | 7e-04 | ||
| 3ti9_A | 352 | Crystal Structure Of The Basic Protease Bprb From T | 8e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From Streptococcus Length = 926 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease From An Extreme Thermophile, Thermus Aquaticus Yt-1 Length = 276 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme From A Psychrotroph Serratia Species Length = 278 | Back alignment and structure |
|
| >pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms Resolution Length = 274 | Back alignment and structure |
|
| >pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease Length = 280 | Back alignment and structure |
|
| >pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin Complex Length = 318 | Back alignment and structure |
|
| >pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between Mat-Tk-Subtilisin And Tk- Propeptide Length = 320 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin Length = 329 | Back alignment and structure |
|
| >pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin Length = 398 | Back alignment and structure |
|
| >pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin And Tk-Propeptide Length = 329 | Back alignment and structure |
|
| >pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin Soaked By 10mm Cacl2 Length = 395 | Back alignment and structure |
|
| >pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of Pro-Sa-Subtilisin Length = 398 | Back alignment and structure |
|
| >pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a Length = 398 | Back alignment and structure |
|
| >pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a Length = 398 | Back alignment and structure |
|
| >pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin Length = 318 | Back alignment and structure |
|
| >pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin Length = 318 | Back alignment and structure |
|
| >pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms Resolution Length = 279 | Back alignment and structure |
|
| >pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium Pennivorans, A Keratinolytic Enzyme Related To Subtilisin Length = 671 | Back alignment and structure |
|
| >pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular Dynamics. The Thermostable Serine Protease Thermitase Complexed With Eglin-C Length = 279 | Back alignment and structure |
|
| >pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The Ovine Footrot Pathogen, Dichelobacter Nodosus Length = 352 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 673 bits (1736), Expect = 0.0
Identities = 246/651 (37%), Positives = 359/651 (55%), Gaps = 35/651 (5%)
Query: 117 TTHTPNFLGLHQNSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCE- 175
TTHT +FL L+ +SG W S LG+ VI+ V+D+GI P SF D+GMP P +WKG C+
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 176 ---FKGAACNNKLIGARNFLQG---------STGEPPLDDEGHGTHTATTAAGNFVNGAN 223
F + CN KLIGA F +G T D +GHGTH A+ AGNF G +
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVS 120
Query: 224 VFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVPF 283
FG A GTA G+AP A LA+YK +G S + AAMD A+ DGVD++S+S G +P
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRFIPL 180
Query: 284 FEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGN 343
+ED ++I SF A+ K + VS SAGN GP + +N +PWIL V + TDR+ ++ LGN
Sbjct: 181 YEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGN 240
Query: 344 QAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERT 403
G +LF + F + P+IY + SS + N +V+C+ G
Sbjct: 241 GLKIRGWSLFPARAF-VRDSPVIYNKTLSDCSSEELLSQ--VENPENTIVICDDNGDFSD 297
Query: 404 KKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATI 463
+ + + A I +++ + + P V V+ G+ + Y+ ++ +P ATI
Sbjct: 298 QMRIITR-ARLKAAIFISE--DPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATI 354
Query: 464 VFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAW-----PFSVENKTN 518
F+ T + K P +A+ S+RGPS + GI KPDI+ PGV ILAA+ S+
Sbjct: 355 TFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNIL 414
Query: 519 TKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQ-R 577
+ + + +GTSM+ PH +G+AA+LK+AHP+WSP+AI+SA+MTTAD + KPI D
Sbjct: 415 LSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSDN 474
Query: 578 LLPADMFAVGAGHVNPSSANDPGLIYDIQPDDYIPYLCGLNYSDQHVQDIVMINVQCSKV 637
A +GAGHV+P+ A DPGL+YD P DY+ LC LN++++ + I + +
Sbjct: 475 NKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNC- 533
Query: 638 SGIAETELNYPSFSVILG------STSQTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEP 691
+LNYPSF + Q + RTVTNVG+ ++Y K+ AP+ T++V P
Sbjct: 534 -SNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSP 592
Query: 692 ENISFTKKNQKAIYSITFTRSQKTSALFAQGYLSWVST--KHTVRSPIAVR 740
+ + F KN+K Y++T G ++WV H+VRSPI
Sbjct: 593 QILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTS 643
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 663 bits (1711), Expect = 0.0
Identities = 261/641 (40%), Positives = 363/641 (56%), Gaps = 40/641 (6%)
Query: 117 TTHTPNFLGLHQNSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEF 176
TT + +FLG + S + +++GV+DTGI P PSF DEG PPP KWKG CE
Sbjct: 1 TTRSWDFLGFPL--TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCET 58
Query: 177 KGA-ACNNKLIGARNFLQGSTGEP-----PLDDEGHGTHTATTAAGNFVNGANVFGQADG 230
CN K+IGAR++ G P P D GHGTHTA+TAAG V+ AN++G G
Sbjct: 59 SNNFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLG 118
Query: 231 TAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAAS-VPFFEDPLA 289
TA G PLA +A YKVC DGCS++ + AA D AI DGVD++SLS+G A+ +F D +A
Sbjct: 119 TARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIA 178
Query: 290 IGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDG 349
IGSF A+++ I S SAGN GPN T+++ +PW+LSV AST DR V V++GN + G
Sbjct: 179 IGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQG 238
Query: 350 EALFQPKDFPSKQFPLIYPGANGNVS-----SAQCSPGSLSSN-IRGKLVLCERGGGERT 403
++ F ++ +PL+ N S C+ S++ N ++GK+V+CE G
Sbjct: 239 VSINT---FDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPH- 294
Query: 404 KKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATI 463
+ K G +LM + AD + LP+ + + YI S SP ATI
Sbjct: 295 ---EFFKSLDGAAGVLMT---SNTRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATI 348
Query: 464 VFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKT-NTKST 522
FK T I S P + SFSSRGP+ A+ ++KPDI GPGV ILAAWP +
Sbjct: 349 -FKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTL 407
Query: 523 FNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPAD 582
FN+++GTSMSCPH++G+A +K+ +P WSPAAIKSA+MTTA ++ P
Sbjct: 408 FNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFN--------PQA 459
Query: 583 MFAVGAGHVNPSSANDPGLIYDIQPDDYIPYLCGLNYSDQHVQDIVMINVQCSKVSGIAE 642
FA G+GHVNP A PGL+YD DY+ +LCG Y+ Q V+ I C+ +
Sbjct: 460 EFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRV 519
Query: 643 TELNYPSFSVILG---STSQTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKK 699
+LNYPSF + + + +Q +NRT+T+V S+Y I AP+G+T++V P +SF
Sbjct: 520 WDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGL 579
Query: 700 NQKAIYSITFTRSQKTSALFAQGYLSWVSTKHTVRSPIAVR 740
+ +++T S K + L W H VRSPI +
Sbjct: 580 GDRKSFTLTVRGSIKGFVVS--ASLVWSDGVHYVRSPITIT 618
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 494 bits (1274), Expect = e-163
Identities = 126/633 (19%), Positives = 225/633 (35%), Gaps = 78/633 (12%)
Query: 128 QNSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCE--------FKGA 179
Q + + G G ++ V+D G H ++ + K E G
Sbjct: 5 QVKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGE 64
Query: 180 ACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLA 239
N+K+ ++ S D+ HGTH + +GN A + G P A
Sbjct: 65 WVNDKVAYYHDY---SKDGKTAVDQEHGTHVSGILSGN----APSETKEPYRLEGAMPEA 117
Query: 240 HLAIYKVCDFDGCS--ESRVYAAMDTAIDDGVDVLSLSLGAASVPF--FEDPLAIGSFSA 295
L + +V +G + A+ AI+ G V+++S G A++ + D A
Sbjct: 118 QLLLMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYA 177
Query: 296 IQKEIFVSCSAGNEGPNPSTSS---NEAPWILSVGASTTDRSIVASVELGNQAVYDGEAL 352
K + + SAGN+ + + P VG S +
Sbjct: 178 KSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVR 237
Query: 353 FQPKDFPSKQFPLIY-----PGANGNVSSAQCSPGSLS-SNIRGKLVLCERGGGERTKKG 406
+ D K+ P++ P + + A +++GK+ L ERG + K
Sbjct: 238 VKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKI 297
Query: 407 QVVKDAGGIGMILMNDKLNGYS-TLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVF 465
K AG +G+++ +++ G+ L + +PA +S G +K T T
Sbjct: 298 AKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNPQKT----ITFNA 353
Query: 466 KGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNM 525
V+ S +L+ FSS G + + G +KPDI PG +IL++ + +
Sbjct: 354 TPKVLPTASGTKLSRFSSWGLT--ADGNIKPDIAAPGQDILSSVA---------NNKYAK 402
Query: 526 VAGTSMSCPHLSGVAALLKSAHPDWSPAA--------IKSAIMTTADIVSLDGKPIVDQR 577
++GTSMS P ++G+ LL+ + P K +M++A + + +
Sbjct: 403 LSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEK----- 457
Query: 578 LLPADMFAVGAGHVNPSSANDPGLIYDIQPDDYIPYLCGLNY-SDQHVQDIVMINVQCSK 636
GAG V+ A+ + + D LN SD+ + + N
Sbjct: 458 -AYFSPRQQGAGAVDAKKASAATMY--VTDKDNTSSKVHLNNVSDKFEVTVNVHNK---- 510
Query: 637 VSGIAETELNYPSFSVILGSTSQTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISF 696
EL Y + +V + V S I A VTV + F
Sbjct: 511 --SDKPQELYYQA-TVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPIDASRF 567
Query: 697 TKKNQKAIYSITFTRSQKTSALFAQGYLSWVST 729
+K + + F +G++ +
Sbjct: 568 SKDLLAQMKNGY----------FLEGFVRFKQD 590
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 6e-37
Identities = 83/483 (17%), Positives = 143/483 (29%), Gaps = 100/483 (20%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGE 198
I ++D+G H + + N
Sbjct: 21 AGNRTICIIDSGYDRSHNDLNA-----------------------NNVTGTNNSGTGNWY 57
Query: 199 PPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGC-SESRV 257
P ++ HGTH A T A N V G I + KV + G S +
Sbjct: 58 QPGNNNAHGTHVAGTIAAI-ANNEGVVGVMPNQNANIHIV------KVFNEAGWGYSSSL 110
Query: 258 YAAMDTAIDD-GVDVLSLSLG-AASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPST 315
AA+DT ++ G +V+++SLG + S + A+ + + + +AGN G + +
Sbjct: 111 VAAIDTCVNSGGANVVTMSLGGSGSTTTERN--ALN--THYNNGVLLIAAAGNAGDSSYS 166
Query: 316 SSNEAPWILSVGASTTDRSIV------ASVELG------NQAVYDGEALFQPKDFPSKQF 363
++SV A ++ VE+ V GE + D
Sbjct: 167 YPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGE--GRLADITIGGQ 224
Query: 364 PLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDK 423
G + + I A I ++
Sbjct: 225 SYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGN 284
Query: 424 LNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKG--------TVIGKKST 475
+ + AG ++++ P F +
Sbjct: 285 QGSSYPEIN-----STKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRA 339
Query: 476 PELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPH 535
LA + G S + G + GTSM+ PH
Sbjct: 340 TGLALKAKLGQST--------TVSNQGNQDYEYY-----------------NGTSMATPH 374
Query: 536 LSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSS 595
+SGVA L+ S HP+ S + +++A+ TAD +S+ G+ G G +N +
Sbjct: 375 VSGVATLVWSYHPECSASQVRAALNATADDLSVAGRDN-----------QTGYGMINAVA 423
Query: 596 AND 598
A
Sbjct: 424 AKA 426
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 8e-31
Identities = 69/275 (25%), Positives = 105/275 (38%), Gaps = 52/275 (18%)
Query: 81 NVITGFAAKLTAEQAKAMETKEGFIS---------AHVEKTLQLHTTHTPNFL--GLHQN 129
++I A K+ + + +++ + L Q
Sbjct: 67 HIIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQV 126
Query: 130 S--GFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIG 187
W G G+ IG++DTGI HP K+IG
Sbjct: 127 MATNMWNLGYDGSGITIGIIDTGIDASHPDLQG-----------------------KVIG 163
Query: 188 ARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVC 247
+F+ G T P DD GHGTH A+ AAG +G G+AP A L KV
Sbjct: 164 WVDFVNGKTT--PYDDNGHGTHVASIAAGTGAAS-------NGKYKGMAPGAKLVGIKVL 214
Query: 248 DFDG-CSESRVYAAMDTAIDD----GVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFV 302
+ G S S + +D A+ + G+ V++LSLG++ D L+ +A + V
Sbjct: 215 NGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVV 274
Query: 303 SCSAGNEGPNPSTSSN--EAPWILSVGASTTDRSI 335
+AGN GPN T + A +++VGA I
Sbjct: 275 VVAAGNSGPNKYTVGSPAAASKVITVGAVDKYDVI 309
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-25
Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 17/218 (7%)
Query: 477 ELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHL 536
+ FSSRGP+ LKP+++ PG I+AA + GT+M+ PH+
Sbjct: 308 VITDFSSRGPTAD--NRLKPEVVAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHV 365
Query: 537 SGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSA 596
+G+AALL AHP W+P +K+A++ TADIV D + GAG VN A
Sbjct: 366 AGIAALLLQAHPSWTPDKVKTALIETADIVKPDEIADIAY----------GAGRVNAYKA 415
Query: 597 NDPGLIYDIQPDDYIPYLCGLNYSDQHVQD-IVMINVQCSKVSGIAETELNYPSFSVILG 655
+ Y+ ++ V + + L P+ + +
Sbjct: 416 AYYDNYAKLTFTGYVSNKGSQSHQFTISGAGFVTATLYWDNSGSDLDLYLYDPNGNQVDY 475
Query: 656 STSQTYNRTVTNVGQAES-SYTHKIVAPEG---VTVTV 689
S + Y + ++T K+V+ G V V
Sbjct: 476 SYTAYYGFEKVGYYNPTAGTWTIKVVSYSGSANYQVDV 513
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 54/209 (25%), Positives = 83/209 (39%), Gaps = 45/209 (21%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
G V + V+D+GI HP K+ G + +
Sbjct: 17 HSQGYTGSNVKVAVIDSGIDSSHPDL-------------------------KVAGGASMV 51
Query: 193 QGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGC 252
S P D+ HGTH A T A N V +G+AP A L KV DG
Sbjct: 52 -PSETNPFQDNNSHGTHVAGTVAALN-NSIGV--------LGVAPSASLYAVKVLGADGS 101
Query: 253 -SESRVYAAMDTAIDDGVDVLSLSLGAAS-VPFFEDPLAIGSFSAIQKEIFVSCSAGNEG 310
S + ++ AI + +DV+++SLG S + A+ A+ + V +AGNEG
Sbjct: 102 GQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKA--AVD--KAVASGVVVVAAAGNEG 157
Query: 311 PNPSTSSNE----APWILSVGASTTDRSI 335
+ S+S+ P +++VGA +
Sbjct: 158 TSGSSSTVGYPGKYPSVIAVGAVDSSNQR 186
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 9e-22
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 31/120 (25%)
Query: 477 ELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHL 536
+ ASFSS GP + D++ PGV+I + P NK + GTSM+ PH+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQSTLP---GNKYGAYN------GTSMASPHV 227
Query: 537 SGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSA 596
+G AAL+ S HP+W+ ++S++ T + G G +N +A
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF--------------YYGKGLINVQAA 273
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 52/209 (24%), Positives = 86/209 (41%), Gaps = 46/209 (22%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
G V + V+DTGI HP ++G +F+
Sbjct: 17 QAQGFKGANVKVAVLDTGIQASHPDL-------------------------NVVGGASFV 51
Query: 193 QGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGC 252
G D GHGTH A T A N V +G+AP L KV + G
Sbjct: 52 AGEAY--NTDGNGHGTHVAGTVAAL-DNTTGV--------LGVAPSVSLYAVKVLNSSGS 100
Query: 253 -SESRVYAAMDTAIDDGVDVLSLSLG-AASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEG 310
S S + + ++ A +G+DV+++SLG A+ + A+ +A + + V +AGN G
Sbjct: 101 GSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQ--AVD--NAYARGVVVVAAAGNSG 156
Query: 311 PNPSTSSNE----APWILSVGASTTDRSI 335
+ ST++ +++VGA ++ +
Sbjct: 157 NSGSTNTIGYPAKYDSVIAVGAVDSNSNR 185
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 5e-22
Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 39/157 (24%)
Query: 444 AAG-ESIKAYINSTSSP---NATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDII 499
AAG N+ P ++ I V S ASFSS G + +++
Sbjct: 151 AAGNSGNSGSTNTIGYPAKYDSVI----AVGAVDSNSNRASFSSVGAEL--------EVM 198
Query: 500 GPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAI 559
PG + + +P N T + GTSM+ PH++G AAL+ S HP+ S + +++ +
Sbjct: 199 APGAGVYSTYP---TNTYATLN------GTSMASPHVAGAAALILSKHPNLSASQVRNRL 249
Query: 560 MTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSA 596
+TA + G G +N +A
Sbjct: 250 SSTATYLGSSFY--------------YGKGLINVEAA 272
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 1e-26
Identities = 49/211 (23%), Positives = 75/211 (35%), Gaps = 45/211 (21%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
+ G G+ I V+DTG+ HP + + ++F
Sbjct: 19 LTSTTGGSGINIAVLDTGVNTSHPDLVN-----------------------NVEQCKDFT 55
Query: 193 QGST--GEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFD 250
+T D GHGTH A TA + + G+AP A L YKV
Sbjct: 56 GATTPINNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDS 108
Query: 251 G-CSESRVYAAMDTAIDDGV-----DVLSLSLGA-ASVPFFEDPLAIGSFSAIQKEIFVS 303
G + AA+ A D ++S+SLG+ A+ A+ A K + +
Sbjct: 109 GSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISS--AVN--YAYSKGVLIV 164
Query: 304 CSAGNEGPNPSTSSNEA--PWILSVGASTTD 332
+AGN G + T P ++V A
Sbjct: 165 AAAGNSGYSQGTIGYPGALPNAIAVAALENV 195
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 17/126 (13%)
Query: 471 GKKSTPELASFSSRGP----SIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMV 526
+ T +A +SSRG +I PG ++ + W NT S
Sbjct: 196 QQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWY---NGGYNTIS----- 247
Query: 527 AGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAV 586
GTSM+ PH+SG+AA + + +P S ++S + A D +A
Sbjct: 248 -GTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAK----SVDIKGGYGAAIGDDYAS 302
Query: 587 GAGHVN 592
G G
Sbjct: 303 GFGFAR 308
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 48/205 (23%), Positives = 75/205 (36%), Gaps = 40/205 (19%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
W + G G I ++DTG+ HP + K++G +F+
Sbjct: 24 WDIAE-GSGAKIAIVDTGVQSNHPDLAG-----------------------KVVGGWDFV 59
Query: 193 QGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG- 251
+ P + GHGTH A AA N + G AP A + +V D G
Sbjct: 60 DNDST--PQNGNGHGTHCAGIAAAVTNNSTGI--------AGTAPKASILAVRVLDNSGS 109
Query: 252 CSESRVYAAMDTAIDDGVDVLSLSLGA-ASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEG 310
+ + V + A D G V+SLSLG + A+ A K V +AGN G
Sbjct: 110 GTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQ--AVN--YAWNKGSVVVAAAGNAG 165
Query: 311 PNPSTSSNEAPWILSVGASTTDRSI 335
++V ++ + +
Sbjct: 166 NTAPNYPAYYSNAIAVASTDQNDNK 190
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 3e-18
Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 32/123 (26%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
+SFS+ G + D+ PG +I + +P + + S GTSM+
Sbjct: 186 QNDNKSSFSTYGSWV--------DVAAPGSSIYSTYP---TSTYASLS------GTSMAT 228
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNP 593
PH++GVA LL S S + I++AI TAD +S G G VN
Sbjct: 229 PHVAGVAGLLASQGR--SASNIRAAIENTADKISGTGT-------------YWAKGRVNA 273
Query: 594 SSA 596
A
Sbjct: 274 YKA 276
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 4e-25
Identities = 52/205 (25%), Positives = 79/205 (38%), Gaps = 43/205 (20%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
G GV + V+DTGI+ HP + G +F+
Sbjct: 17 HNRGLTGSGVKVAVLDTGIST-HPDL-------------------------NIRGGASFV 50
Query: 193 QGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG- 251
G D GHGTH A T A N V +G+AP A L KV G
Sbjct: 51 PGEPS--TQDGNGHGTHVAGTIAAL-NNSIGV--------LGVAPSAELYAVKVLGASGS 99
Query: 252 CSESRVYAAMDTAIDDGVDVLSLSLG-AASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEG 310
S S + ++ A ++G+ V +LSLG + E A+ S A + + V ++GN G
Sbjct: 100 GSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQ--AVNS--ATSRGVLVVAASGNSG 155
Query: 311 PNPSTSSNEAPWILSVGASTTDRSI 335
+ ++VGA+ + +
Sbjct: 156 AGSISYPARYANAMAVGATDQNNNR 180
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 1e-21
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 31/120 (25%)
Query: 477 ELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHL 536
ASFS G + DI+ PGVN+ + +P + + + GTSM+ PH+
Sbjct: 179 NRASFSQYGAGL--------DIVAPGVNVQSTYP---GSTYASLN------GTSMATPHV 221
Query: 537 SGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSA 596
+G AAL+K +P WS I++ + TA + G+G VN +A
Sbjct: 222 AGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN--------------LYGSGLVNAEAA 267
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 4e-25
Identities = 49/205 (23%), Positives = 76/205 (37%), Gaps = 39/205 (19%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
W + G I V+DTG+ HP K+I +F+
Sbjct: 24 WDVTKGSSGQEIAVIDTGVDYTHPDLDG-----------------------KVIKGYDFV 60
Query: 193 QGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG- 251
P+D HGTH A AA N + G+AP + + D +G
Sbjct: 61 DNDYD--PMDLNNHGTHVAGIAAAETNNATGI--------AGMAPNTRILAVRALDRNGS 110
Query: 252 CSESRVYAAMDTAIDDGVDVLSLSLGAASV-PFFEDPLAIGSFSAIQKEIFVSCSAGNEG 310
+ S + A+ A D G +V++LSLG E+ A+ A K V +AGN G
Sbjct: 111 GTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLEN--AVN--YAWNKGSVVVAAAGNNG 166
Query: 311 PNPSTSSNEAPWILSVGASTTDRSI 335
+ + +++VGA +
Sbjct: 167 SSTTFEPASYENVIAVGAVDQYDRL 191
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 7e-18
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 32/120 (26%)
Query: 477 ELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHL 536
LASFS+ G + D++ PGV+I++ N+ S GTSM+ PH+
Sbjct: 190 RLASFSNYGTWV--------DVVAPGVDIVSTIT---GNRYAYMS------GTSMASPHV 232
Query: 537 SGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSA 596
+G+AALL S + I+ AI TAD +S G G +N +A
Sbjct: 233 AGLAALLASQGR--NNIEIRQAIEQTADKISGTGT-------------YFKYGRINSYNA 277
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 2e-24
Identities = 58/218 (26%), Positives = 86/218 (39%), Gaps = 51/218 (23%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
W+ S G G IIGV+DTG HP ++ ++IG N
Sbjct: 34 WRASAKGAGQIIGVIDTGCQVDHPDLAE-----------------------RIIGGVNLT 70
Query: 193 QGSTGEP--PLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFD 250
G+ D+ GHGTH A T A G+ V VG+AP A L I K D
Sbjct: 71 TDYGGDETNFSDNNGHGTHVAGTVAAAE-TGSGV--------VGVAPKADLFIIKALSGD 121
Query: 251 GC-SESRVYAAMDTAIDD------GVDVLSLSLGA-ASVPFFEDPLAIGSFSAIQKEIFV 302
G + A+ A+D + ++++SLG D A+ A+ + V
Sbjct: 122 GSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHD--AVK--YAVSNNVSV 177
Query: 303 SCSAGNEGPNPSTSSNE-----APWILSVGASTTDRSI 335
C+AGNEG ++ +++VGA D +
Sbjct: 178 VCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRL 215
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 7e-19
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 22/100 (22%)
Query: 477 ELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHL 536
L+ F++ I DI+ PGV I + + ++ S GT+M+ PH+
Sbjct: 214 RLSDFTNTNEEI--------DIVAPGVGIKSTYL---DSGYAELS------GTAMAAPHV 256
Query: 537 SGVAALLKSAHPD-----WSPAAIKSAIMTTADIVSLDGK 571
+G AL+ + D S I + ++ A + +
Sbjct: 257 AGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQ 296
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 2e-23
Identities = 37/234 (15%), Positives = 71/234 (30%), Gaps = 54/234 (23%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
+ D I ++DTG+ H + G
Sbjct: 139 YDDLPKHANTKIAIIDTGVMKNHDDLKN-------NFSTDSKNLVPLNGFR---GTEPEE 188
Query: 193 QGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGC 252
G D +GHGT + + N + +G+AP +Y+V
Sbjct: 189 TGD-VHDVNDRKGHGTMVSGQTSAN----GKL--------IGVAPNNKFTMYRVFGSKKT 235
Query: 253 SESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFS-------------AIQKE 299
V A+ A +DG V+++S+G+ + D A +K+
Sbjct: 236 ELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKK 295
Query: 300 IFVSCSAGNEGPNPSTSSNEA------------------PWILSVGASTTDRSI 335
V +AGN+G + + +++VG++ ++
Sbjct: 296 SIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQKSNL 349
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 1e-14
Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 19/127 (14%)
Query: 477 ELASFSSRGPS---IASPGILKPDIIGPGVNILAAWPFSVENK---TNTKSTFNMVAGTS 530
L+ FS+ G + IA+PG + GV+ + + T + AGT+
Sbjct: 348 NLSEFSNFGMNYTDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYIYQAGTA 407
Query: 531 MSCPHLSGVAALLKSA-HPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAG 589
++ P +SG AL+ H + P + + G G
Sbjct: 408 LATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFSR------------YGHG 455
Query: 590 HVNPSSA 596
++ A
Sbjct: 456 ELDVYKA 462
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 104 bits (259), Expect = 6e-23
Identities = 44/232 (18%), Positives = 82/232 (35%), Gaps = 32/232 (13%)
Query: 473 KSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMS 532
K + +++SR P G + PG I + F+ +K+ + GTSM+
Sbjct: 414 KLPGNVYTWTSRDPC--IDGGQGVTVCAPGGAIASVPQFT-MSKSQLMN------GTSMA 464
Query: 533 CPHLSGVAALLKSA----HPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGA 588
PH++G ALL S + ++SP +IK AI TA +L D FA G
Sbjct: 465 APHVAGAVALLISGLKQQNIEYSPYSIKRAISVTAT------------KLGYVDPFAQGH 512
Query: 589 GHVNPSSANDPGLIYDIQPDDYIPYLCGLNYSDQHVQDIVMINVQCSKVSGIAET-ELNY 647
G +N A + + D+ + + + + + I + E +
Sbjct: 513 GLLNVEKAFEHLTEHRQSKDNMLRF--SVRVGNNADKGIHLRQGVQRNSIDYNVYIEPIF 570
Query: 648 PSFSVILGSTSQTYNRTVTNVGQAE----SSYTHKIVAPEGVTVTVEPENIS 695
+ +N + + ++ + V V+P +
Sbjct: 571 YNDKEADPKDKFNFNVRLNLIASQPWVQCGAFLDLSYGTRSIAVRVDPTGLQ 622
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 99 bits (248), Expect = 1e-21
Identities = 39/211 (18%), Positives = 72/211 (34%), Gaps = 29/211 (13%)
Query: 141 GVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPP 200
+ ++DT G + + +F + N +G+ E
Sbjct: 214 DGWLTIVDTTEQGDLDQALRIGEYSRTHETRNVDDFLSISVNV-------HDEGNVLEVV 266
Query: 201 LDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSE---SRV 257
HGTH ++ A+GN + G+AP A + + D S + +
Sbjct: 267 GMSSPHGTHVSSIASGNH---------SSRDVDGVAPNAKIVSMTIGDGRLGSMETGTAL 317
Query: 258 YAAMDTAID-----DGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKE-IFVSCSAGNEGP 311
AM ++ +DV+++S G + + + K + SAGN GP
Sbjct: 318 VRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASAGNHGP 377
Query: 312 NPSTSSN----EAPWILSVGASTTDRSIVAS 338
T P ++ VGA + + + A
Sbjct: 378 ALCTVGTPPDISQPSLIGVGAYVSPQMMEAE 408
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 52/220 (23%), Positives = 75/220 (34%), Gaps = 37/220 (16%)
Query: 133 WKDSNL-GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNF 191
L G+G I+ V DTG+ G S F+G K+
Sbjct: 14 QSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------------AFRG-----KITALYAL 56
Query: 192 LQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG 251
+ + D GHGTH A + GN T G+AP A+L + D G
Sbjct: 57 GRTNN---ANDTNGHGTHVAGSVLGN-----------GSTNKGMAPQANLVFQSIMDSGG 102
Query: 252 C---SESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGN 308
S + A G + + S GAA + + ++ + +AGN
Sbjct: 103 GLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGN 162
Query: 309 EGPNPSTSSNEA--PWILSVGASTTDRSIVASVELGNQAV 346
EGPN T S ++VGA+ R S V
Sbjct: 163 EGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNINHV 202
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 2e-16
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 11/130 (8%)
Query: 478 LASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVA---GTSMSCP 534
+A FSSRGP+ G +KPD++ PG IL+A + + + + A GTSM+ P
Sbjct: 202 VAQFSSRGPT--KDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATP 259
Query: 535 HLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPS 594
++G A L+ K +++ A I L G G V
Sbjct: 260 IVAGNVAQLREHFVKNRGITPKPSLLKAALIAG------AADIGLGYPNGNQGWGRVTLD 313
Query: 595 SANDPGLIYD 604
+ + + +
Sbjct: 314 KSLNVAYVNE 323
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 97.5 bits (243), Expect = 7e-22
Identities = 59/296 (19%), Positives = 96/296 (32%), Gaps = 79/296 (26%)
Query: 81 NVITGFAAKLTAEQAKAMETKEGFISAHVEKTLQLHTTHTPNFLGLHQNSGF-------- 132
+I + A ++ G VE Q P++LG
Sbjct: 31 KLIPAVVVDVPANAVGKLKKMPGV--EKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIE 88
Query: 133 -------WKDSNL-GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNK 184
W ++ + + V+DTG+ HP +
Sbjct: 89 RVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAA-----------------------N 125
Query: 185 LIGARNFLQGST---GEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHL 241
+ + L+G D GHGTH T A N V VG+AP +
Sbjct: 126 IAWCVSTLRGKVSTKLRDCADQNGHGTHVIGTIAAL-NNDIGV--------VGVAPGVQI 176
Query: 242 AIYKVCDFDGC-SESRVYAAMDTAI--------------------DDGVDVLSLSLG-AA 279
+V D G S S + ++ AI DD +V+S+SLG A
Sbjct: 177 YSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA 236
Query: 280 SVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSI 335
+ D + A I + ++GNEG + P +++VGA ++ +I
Sbjct: 237 DDSYLYDMII----QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNI 288
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 2e-15
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 43/133 (32%)
Query: 477 ELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHL 536
+ASFS+R P ++ PGV+IL+ +P ++ T GT+M+ PH+
Sbjct: 287 NIASFSNRQP----------EVSAPGVDILSTYP---DDSYETLM------GTAMATPHV 327
Query: 537 SGVAALLKSAH-------------PDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADM 583
SGV AL+++A+ D S ++ + TAD + G
Sbjct: 328 SGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDA---------- 377
Query: 584 FAVGAGHVNPSSA 596
G G V + A
Sbjct: 378 -DYGYGVVRAALA 389
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 9e-21
Identities = 48/222 (21%), Positives = 78/222 (35%), Gaps = 61/222 (27%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGST-- 196
+ + V+DTG+ HP + + + L+G
Sbjct: 28 VSVIQVAVLDTGVDYDHPDLAA-----------------------NIAWCVSTLRGKVST 64
Query: 197 -GEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGC-SE 254
D GHGTH T A N V VG+AP + +V D G S
Sbjct: 65 KLRDCADQNGHGTHVIGTIAAL-NNDIGV--------VGVAPGVQIYSVRVLDARGSGSY 115
Query: 255 SRVYAAMDTAI--------------------DDGVDVLSLSLGAASV-PFFEDPLAIGSF 293
S + ++ AI DD +V+S+SLG + + D +
Sbjct: 116 SDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMII---- 171
Query: 294 SAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSI 335
A I + ++GNEG + P +++VGA ++ +I
Sbjct: 172 QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNI 213
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 5e-16
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 43/133 (32%)
Query: 477 ELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHL 536
+ASFS+R P ++ PGV+IL+ +P ++ T GT+M+ PH+
Sbjct: 212 NIASFSNRQP----------EVSAPGVDILSTYP---DDSYETLM------GTAMATPHV 252
Query: 537 SGVAALLKSAH-------------PDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADM 583
SGV AL+++A+ D S ++ + TAD + G
Sbjct: 253 SGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDA---------- 302
Query: 584 FAVGAGHVNPSSA 596
G G V + A
Sbjct: 303 -DYGYGVVRAALA 314
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 95.4 bits (237), Expect = 2e-20
Identities = 44/314 (14%), Positives = 90/314 (28%), Gaps = 63/314 (20%)
Query: 33 YIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCYKNVITGFAAKLTA 92
Y+V V K + + + + ++L+ + ++ GF K++
Sbjct: 78 YVV-VLKEETHLSQSE---RTARRLQAQAARR-----GYLTKILHVFHGLLPGFLVKMSG 128
Query: 93 EQAKAMETKEGFISAHVEKTLQLHTTHTPNFLGL----HQNSGF--WKDSNLGKGVIIGV 146
+ + ++E+ + P L ++ + G V + +
Sbjct: 129 DLLELALKLPHV--DYIEEDSSVFAQSIPW--NLERITPPRYRADEYQPPDGGSLVEVYL 184
Query: 147 MDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGH 206
+DT I H E +G + H
Sbjct: 185 LDTSIQSDHR------------------EIEGRVMVTDFENVPEEDGTRFHRQASKCDSH 226
Query: 207 GTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAI 265
GTH A + G G+A A + +V + G + S ++
Sbjct: 227 GTHLAGVVS--------------GRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIR 272
Query: 266 DDGVD------VLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSS-N 318
+ V+ L L A + + + +AGN + S
Sbjct: 273 KSQLVQPVGPLVVLLPLAGGYSRVLNA--ACQ--RLARAGVVLVTAAGNFRDDACLYSPA 328
Query: 319 EAPWILSVGASTTD 332
AP +++VGA+
Sbjct: 329 SAPEVITVGATNAQ 342
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 1e-14
Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 33/170 (19%)
Query: 439 VHVSYAAG-ESIKAYINSTSSP-NATIVFKGTVIGKKSTPELASFSSR----GPSIASPG 492
V + AAG A SP +A V TV + + + + G +
Sbjct: 309 VVLVTAAGNFRDDA---CLYSPASAPEVI--TVGATNAQDQPVTLGTLGTNFGRCV---- 359
Query: 493 ILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSP 552
D+ PG +I+ A ++S GTS + H++G+AA++ SA P+ +
Sbjct: 360 ----DLFAPGEDIIGASSDC-STCFVSQS------GTSQAAAHVAGIAAMMLSAEPELTL 408
Query: 553 AAIKSAIMTTA--DIVSLDGKPIVDQ-----RLLPADMFAVGAGHVNPSS 595
A ++ ++ + D+++ P + + GAG
Sbjct: 409 AELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCR 458
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 91.8 bits (228), Expect = 4e-20
Identities = 31/226 (13%), Positives = 57/226 (25%), Gaps = 37/226 (16%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFK--------------G 178
+ + I ++D F + W E G
Sbjct: 42 HNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQG 101
Query: 179 AACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPL 238
K + + + H H +T G + GIAP
Sbjct: 102 LKGKEKEEALEAVIPDTKD--RIVLNDHACHVTSTIVGQEHSPV----------FGIAPN 149
Query: 239 AHLAIYKVCDFDGCSESR------VYAAMDTAIDDGVDVLSLSLG-AASVPFFEDPL--A 289
+ + + A+D A++ G +++ + E+ L A
Sbjct: 150 CRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQA 209
Query: 290 IGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSI 335
I + + GN P L+VGA+ D +
Sbjct: 210 IKK--CQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVDGTP 253
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 5e-18
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 26/124 (20%)
Query: 477 ELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHL 536
FS+ G + K I+ PG IL A P + + T GTSM+ P +
Sbjct: 252 TPCHFSNWGGNNT-----KEGILAPGEEILGAQP---CTEEPVRLT-----GTSMAAPVM 298
Query: 537 SGVAALLKSAH----PDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVN 592
+G++ALL S A+++A++ TA + + G VN
Sbjct: 299 TGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV---------VEEPERCLRGFVN 349
Query: 593 PSSA 596
A
Sbjct: 350 IPGA 353
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 91.7 bits (227), Expect = 3e-19
Identities = 32/132 (24%), Positives = 47/132 (35%), Gaps = 28/132 (21%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVA------ 527
T +A FSSR + + PGV IL+ P +
Sbjct: 324 GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYD 375
Query: 528 ---GTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMF 584
GTSM+ PH++GV A+L P+ P I+ + TA + +G
Sbjct: 376 YYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWD-----------H 424
Query: 585 AVGAGHVNPSSA 596
G G V +A
Sbjct: 425 DTGYGLVKLDAA 436
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 86.7 bits (214), Expect = 8e-18
Identities = 41/215 (19%), Positives = 66/215 (30%), Gaps = 52/215 (24%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
+ G +I+ V+DTG+ HP ++I
Sbjct: 147 LWEEASGTNIIVAVVDTGVDGTHPDLEG-----------------------QVIAGYRPA 183
Query: 193 QGSTG---EPPLDDEGHGTHTATT-AAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCD 248
GTH A T AA +G + VG+AP A + + D
Sbjct: 184 FDEELPAGTDSSYGGSAGTHVAGTIAAKK--DGKGI--------VGVAPGAKIMPIVIFD 233
Query: 249 FDGC-------SESRVYAAMDTAIDDGVDVLSLSLGAAS-VPFFEDPLAIGSFSAIQKEI 300
+ V A + A D G V++ S G ++ A A++ +
Sbjct: 234 DPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKE--AFD--YAMEHGV 289
Query: 301 FVSCSAGNEGPNPSTSS-NEAPWILSVGASTTDRS 334
+ SAGN + P ++ V A D
Sbjct: 290 VMVVSAGNNTSDSHHQYPAGYPGVIQVAA--LDYY 322
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 1e-18
Identities = 35/176 (19%), Positives = 55/176 (31%), Gaps = 32/176 (18%)
Query: 421 NDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELAS 480
ND + A + PA +Y S+ + A + +
Sbjct: 183 NDGADIRKLSAQQRIWPA---AYHPVSSVNKKQDPVIRVAALAQY-RKGETPVLHGGGIT 238
Query: 481 FSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVA 540
S G + DI PG NI P + KT T S GTS + +SGV
Sbjct: 239 GSRFGNN-------WVDIAAPGQNITFLRP---DAKTGTGS------GTSEATAIVSGVL 282
Query: 541 ALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSA 596
A + S +P + +K ++ +AD + +N A
Sbjct: 283 AAMTSCNPRATATELKRTLLESADKYPSLVDKV------------TEGRVLNAEKA 326
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 7e-17
Identities = 30/240 (12%), Positives = 59/240 (24%), Gaps = 61/240 (25%)
Query: 133 WKDSNL-GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNF 191
V++ V+D+G+ ++ +F
Sbjct: 36 TMSLTDKNTPVVVSVVDSGVAFIGG------------------------LSDSEFAKFSF 71
Query: 192 LQGSTGEP---PLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCD 248
Q + P HGT A+ A + G G+ P A ++ +V
Sbjct: 72 TQDGSPFPVKKSEALYIHGTAMASLIASRY-----------GIY-GVYPHALISSRRVIP 119
Query: 249 FDGCSE----SRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSC 304
+ ++++S G V + S + +
Sbjct: 120 DGVQDSWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVA 179
Query: 305 SAGNEGPNPSTSSNEAP-----------------WILSVGASTTDRSIVASVELGNQAVY 347
+ GN+G + S + ++ V A R V G
Sbjct: 180 AVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGETPVLHGGGITG 239
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 2e-18
Identities = 44/221 (19%), Positives = 72/221 (32%), Gaps = 29/221 (13%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFS-------DEGMPPPPAKWKGKCEFKGAACNNKL 185
W G+ V++ V+DTGI H + D + + +
Sbjct: 25 WDMGFTGQNVVVAVVDTGILH-HRDLNANVLPGYDFISNSQISLDGDGRDADPFDEGDWF 83
Query: 186 IGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYK 245
+ + D HG+H A T A N V G+A A + +
Sbjct: 84 DNWACGGRPDPRKERSDSSWHGSHVAGTIAAVTNNRIGV--------AGVAYGAKVVPVR 135
Query: 246 VCDFDGCSESRVYAAMDTAIDD----------GVDVLSLSLGAASVPFFEDPLAIGSFSA 295
G +S + + A V+++SLG+ + I A
Sbjct: 136 ALGRCGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQTMID--RA 193
Query: 296 IQKEIFVSCSAGNEGPNPSTSS-NEAPWILSVGASTTDRSI 335
+ V +AGNE N S + +LSVGA+T+
Sbjct: 194 TRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSRGIR 234
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 5e-16
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 14/95 (14%)
Query: 477 ELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHL 536
ASFS+ G + D+ PG +IL+ + ++ +AGTSM+ PH+
Sbjct: 233 IRASFSNYGVDV--------DLAAPGQDILSTVDSGTRRPVS--DAYSFMAGTSMATPHV 282
Query: 537 SGVAALLKSA----HPDWSPAAIKSAIMTTADIVS 567
SGVAAL+ SA + + +PA +K +++T +
Sbjct: 283 SGVAALVISAANSVNKNLTPAELKDVLVSTTSPFN 317
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 1e-17
Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 22/127 (17%)
Query: 439 VHVSYAAG-ESIKAYINSTSSP-NATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKP 496
+ AAG ++ A SP A TV S +SFS+ G +
Sbjct: 151 ITFVVAAGNDNSNA---CNYSPARAADAI--TVGSTTSNDSRSSFSNYGTCL-------- 197
Query: 497 DIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIK 556
DI PG +I ++W S + TNT S GTSM+ PH++GVAAL +P+ SPA +
Sbjct: 198 DIYAPGSSITSSWYTS-NSATNTIS------GTSMASPHVAGVAALYLDENPNLSPAQVT 250
Query: 557 SAIMTTA 563
+ + T A
Sbjct: 251 NLLKTRA 257
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 5e-17
Identities = 46/207 (22%), Positives = 76/207 (36%), Gaps = 47/207 (22%)
Query: 130 SGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGAR 189
+ G GV V+DTG+ H EF G A
Sbjct: 21 DNNYHTDYDGSGVTAFVIDTGVLNTHN------------------EFGGRA-----SSGY 57
Query: 190 NFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDF 249
+F+ D GHGTH A T G+ G+A ++ +V +
Sbjct: 58 DFIDN--DYDATDCNGHGTHVAGTIG--------------GSTYGVAKNVNVVGVRVLNC 101
Query: 250 DG-CSESRVYAAMDTAIDDGV--DVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSA 306
G S S V A ++ ++ V ++SLG + +D + +A+ I +A
Sbjct: 102 SGSGSNSGVIAGINWVKNNASGPAVANMSLGGGASQATDDAVN----AAVAAGITFVVAA 157
Query: 307 GNEGPNPSTSS-NEAPWILSVGASTTD 332
GN+ N S A ++VG++T++
Sbjct: 158 GNDNSNACNYSPARAADAITVGSTTSN 184
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 24/127 (18%)
Query: 439 VHVSYAAG-ESIKAYINS-TSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKP 496
V AAG + A S P+ TV S+ +SFS+ G +
Sbjct: 149 VSFMLAAGNSNADACNTSPARVPSGV-----TVGSTTSSDSRSSFSNWGSCV-------- 195
Query: 497 DIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIK 556
D+ PG I +AW + T S GTSM+ PH++GVAAL + +P +
Sbjct: 196 DLFAPGSQIKSAWY---DGGYKTIS------GTSMATPHVAGVAALYLQENNGLTPLQLT 246
Query: 557 SAIMTTA 563
+ + A
Sbjct: 247 GLLNSRA 253
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 7e-17
Identities = 44/210 (20%), Positives = 74/210 (35%), Gaps = 47/210 (22%)
Query: 130 SGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGAR 189
+ + G GV V+DTG+ H EF G + +
Sbjct: 19 DRNYNANFDGFGVTAYVIDTGVNNNHE------------------EFGGRS-----VSGY 55
Query: 190 NFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDF 249
+F+ D GHGTH A T G+ G+A ++ +V
Sbjct: 56 DFVDN--DADSSDCNGHGTHVAGTIG--------------GSQYGVAKNVNIVGVRVLSC 99
Query: 250 DG-CSESRVYAAMDTAIDDGV--DVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSA 306
G + S V + +D + V ++SLG + + AIQ + +A
Sbjct: 100 SGSGTTSGVISGVDWVAQNASGPSVANMSLGGGQSTALDSAVQ----GAIQSGVSFMLAA 155
Query: 307 GNEGPNPSTSS-NEAPWILSVGASTTDRSI 335
GN + +S P ++VG++T+ S
Sbjct: 156 GNSNADACNTSPARVPSGVTVGSTTSSDSR 185
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 2e-17
Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 22/127 (17%)
Query: 439 VHVSYAAG-ESIKAYINS-TSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKP 496
V + AAG ++ A S A TV S+ ASFS+ G +
Sbjct: 149 VVYAVAAGNDNANACNYSPARVAEAL-----TVGATTSSDARASFSNYGSCV-------- 195
Query: 497 DIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIK 556
D+ PG +I +AW S + T T + GTSM+ PH++GVAAL +P +PA++
Sbjct: 196 DLFAPGASIPSAWYTS-DTATQTLN------GTSMATPHVAGVAALYLEQNPSATPASVA 248
Query: 557 SAIMTTA 563
SAI+ A
Sbjct: 249 SAILNGA 255
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 7e-16
Identities = 50/207 (24%), Positives = 76/207 (36%), Gaps = 49/207 (23%)
Query: 130 SGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGAR 189
S + + G+GV + V+DTGI H EF G A
Sbjct: 21 SNSYTYTATGRGVNVYVIDTGIRTTHR------------------EFGGRA-----RVGY 57
Query: 190 NFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDF 249
+ G D GHGTH A T G G+A +L +V D
Sbjct: 58 DA----LGGNGQDCNGHGTHVAGTIG--------------GVTYGVAKAVNLYAVRVLDC 99
Query: 250 DG-CSESRVYAAMDTAIDDGVD--VLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSA 306
+G S S V A +D + V ++SLG ++ + ++I + + +A
Sbjct: 100 NGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGGVSTALDNAVK----NSIAAGVVYAVAA 155
Query: 307 GNEGPNPSTSS-NEAPWILSVGASTTD 332
GN+ N S L+VGA+T+
Sbjct: 156 GNDNANACNYSPARVAEALTVGATTSS 182
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 1e-16
Identities = 33/216 (15%), Positives = 59/216 (27%), Gaps = 46/216 (21%)
Query: 127 HQNSGF--WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNK 184
++ + G V + ++DT I H E +G
Sbjct: 11 PPRYRADEYQPPDGGSLVEVYLLDTSIQSDHR------------------EIEGRVMVTD 52
Query: 185 LIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIY 244
+ HGTH A + G G+A A +
Sbjct: 53 FENVPEEDGTRFHRQASKCDSHGTHLAGVVS--------------GRDAGVAKGASMRSL 98
Query: 245 KVCDFDG-CSESRVYAAMDTAIDD------GVDVLSLSLGAASVPFFEDPLAIGSFSAIQ 297
+V + G + S ++ G V+ L L +
Sbjct: 99 RVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQ----RLAR 154
Query: 298 KEIFVSCSAGNEGPNPSTSS-NEAPWILSVGASTTD 332
+ + +AGN + S AP +++VGA+
Sbjct: 155 AGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQ 190
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 4e-15
Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 20/146 (13%)
Query: 439 VHVSYAAG-ESIKAYINS-TSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKP 496
V + AAG A + S S+P TV + + + + G +
Sbjct: 157 VVLVTAAGNFRDDACLYSPASAPEVI-----TVGATNAQDQPVTLGTLGTNFGR----CV 207
Query: 497 DIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIK 556
D+ PG +I+ A ++S GTS + H++G+AA++ SA P+ + A ++
Sbjct: 208 DLFAPGEDIIGASSDC-STCFVSQS------GTSQAAAHVAGIAAMMLSAEPELTLAELR 260
Query: 557 SAIMTTA--DIVSLDGKPIVDQRLLP 580
++ + D+++ P + L P
Sbjct: 261 QRLIHFSAKDVINEAWFPEDQRVLTP 286
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 53/213 (24%), Positives = 72/213 (33%), Gaps = 55/213 (25%)
Query: 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGA 188
S ++ D + G+G + V+DTGI HP EF+G A
Sbjct: 20 TSTYYYDESAGQGSCVYVIDTGIEASHP------------------EFEGRA-----QMV 56
Query: 189 RNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCD 248
+ + S D GHGTH A T G+A L KV D
Sbjct: 57 KTYYYSSR-----DGNGHGTHCAGTVG--------------SRTYGVAKKTQLFGVKVLD 97
Query: 249 FDG-CSESRVYAAMDTAIDDGVD-------VLSLSLGAASVPFFEDPLAIGSFSAIQKEI 300
+G S + A MD D + V SLSLG A +
Sbjct: 98 DNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNS--AAA--RLQSSGV 153
Query: 301 FVSCSAGNEGPNPSTSS-NEAPWILSVGASTTD 332
V+ +AGN + S P + +VGAS
Sbjct: 154 MVAVAAGNNNADARNYSPASEPSVCTVGASDRY 186
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 25/127 (19%)
Query: 439 VHVSYAAG-ESIKAYINSTSSP-NATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKP 496
V V+ AAG + A SP + V TV +SFS+ G +
Sbjct: 153 VMVAVAAGNNNADA---RNYSPASEPSVC--TVGASDRYDRRSSFSNYGSVL-------- 199
Query: 497 DIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIK 556
DI GPG +IL+ W T + S GTSM+ PH++G+AA L + + A+
Sbjct: 200 DIFGPGTDILSTWI---GGSTRSIS------GTSMATPHVAGLAAYLMTLGKT-TAASAC 249
Query: 557 SAIMTTA 563
I TA
Sbjct: 250 RYIADTA 256
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 4e-15
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 25/127 (19%)
Query: 439 VHVSYAAG-ESIKAYINSTSSP-NATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKP 496
V V+ AAG ++ A + +SP + V TV S ++FS+ G +
Sbjct: 154 VFVAVAAGNDNRDA---ANTSPASEPTVC--TVGATDSNDVRSTFSNYGRVV-------- 200
Query: 497 DIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIK 556
DI PG +I + W +TNT S GTSM+ PH++G+AA L S A+
Sbjct: 201 DIFAPGTSITSTWIGG---RTNTIS------GTSMATPHIAGLAAYLFGLEGG-SAGAMC 250
Query: 557 SAIMTTA 563
I T +
Sbjct: 251 GRIQTLS 257
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 6e-15
Identities = 48/207 (23%), Positives = 75/207 (36%), Gaps = 55/207 (26%)
Query: 135 DSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQG 194
D++ G G + V+DTG+ HP +F+G A +++
Sbjct: 27 DTSAGAGACVYVIDTGVEDTHP------------------DFEGRA-----KQIKSYAST 63
Query: 195 STGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CS 253
+ D GHGTH A T G+A + KV D G S
Sbjct: 64 AR-----DGHGHGTHCAGTIG--------------SKTWGVAKKVSIFGVKVLDDSGSGS 104
Query: 254 ESRVYAAMDTAIDDGVD-------VLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSA 306
S + A MD D V S+SLG A +FV+ +A
Sbjct: 105 LSNIIAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALNQ--AAA--RLQSSGVFVAVAA 160
Query: 307 GNEGPNPSTSS-NEAPWILSVGASTTD 332
GN+ + + +S P + +VGA+ ++
Sbjct: 161 GNDNRDAANTSPASEPTVCTVGATDSN 187
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 6e-14
Identities = 44/259 (16%), Positives = 83/259 (32%), Gaps = 45/259 (17%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
W ++ G GV+ ++D G+ + D N G+ +F
Sbjct: 47 WYNNITGAGVVAAIVDDGLDYENEDLKD---------------------NFCAEGSWDFN 85
Query: 193 QGST-GEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG 251
+ +P L D+ HGT A A N VG+ A ++ ++ D
Sbjct: 86 DNTNLPKPRLSDDYHGTRCAGEIAAKKGNNFCG--------VGVGYNAKISGIRILSGDI 137
Query: 252 CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKE------------ 299
+ A++ +D D+ S S G A + A+ K
Sbjct: 138 -TTEDEAASLIYGLDVN-DIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIY 195
Query: 300 IFVSCSAGNEGPNPSTSS-NEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDF 358
+F S + G G N + + + +++GA E + + + +
Sbjct: 196 VFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLHPPYSEGCSAVMAVTYSSGSGEYI 255
Query: 359 PSKQFPLIYPGANGNVSSA 377
S ++G S+A
Sbjct: 256 HSSDINGRCSNSHGGTSAA 274
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 1e-06
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 12/96 (12%)
Query: 477 ELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHL 536
+S ++ + G G I ++ ++ GTS + P
Sbjct: 231 LHPPYSEGCSAV----MAVTYSSGSGEYIHSSDING-----RCSNSHG---GTSAAAPLA 278
Query: 537 SGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKP 572
+GV LL A+P+ + ++ + +A + +
Sbjct: 279 AGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADG 314
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 6e-10
Identities = 39/216 (18%), Positives = 69/216 (31%), Gaps = 50/216 (23%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
W G G+++ ++D GI HP + N GA +
Sbjct: 31 WAQGFTGHGIVVSILDDGIEKNHPDLAG----------------------NYDPGASFDV 68
Query: 193 QGSTGEP-----PLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVC 247
+P ++D HGT A A NG VG+A A + ++
Sbjct: 69 NDQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCG--------VGVAYNARIGGVRML 120
Query: 248 DFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEI------- 300
D + V A + + + S S G D A + A + +
Sbjct: 121 DGEV--TDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGL 178
Query: 301 -----FVSCSAGNEGPNPS-TSSNEAPWILSVGAST 330
+ S + G E + + + + LS+ ++T
Sbjct: 179 GSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT 214
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 4e-05
Identities = 17/116 (14%), Positives = 39/116 (33%), Gaps = 6/116 (5%)
Query: 487 SIASPGILKPDIIGPGVNILAAWPFSVENKTNTKST------FNMVAGTSMSCPHLSGVA 540
S G + + + +N+ +T GTS S P +G+
Sbjct: 212 SATQFGNVPWYSEACSSTLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGII 271
Query: 541 ALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSA 596
AL A+ + + ++ ++ T+ L+ + + G G ++ +
Sbjct: 272 ALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSYGYGLLDAGAM 327
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 1e-04
Identities = 51/329 (15%), Positives = 86/329 (26%), Gaps = 123/329 (37%)
Query: 19 ALTSNGSDTDSLETYIVYVRKPDQDQATTSIKLDLDS--------WYHSF--LP--VSIS 66
+G T + + + + D+ TT I+ L+ + P I
Sbjct: 335 ESIRDGLAT--WDNW----KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 67 SSI-----NNQPRMLYCYKNVITGFAAKLTAEQAKAMETKEGFISAHVEKTLQLHTT-HT 120
+ + + + V+ E+ + KE IS ++ L
Sbjct: 389 TILLSLIWFDVIK--SDVMVVVNKLHKYSLVEK----QPKESTISIP---SIYLELKVKL 439
Query: 121 PNFLGLHQNSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAA 180
N LH++ I+ + F
Sbjct: 440 ENEYALHRS-------------IV-----------------------DHYNIPKTF---- 459
Query: 181 CNNKLIGARNFLQGSTGEPPLDDE------GHGTH-TATTAAGNFVNGANVF-------- 225
++ LI PP D+ GH H VF
Sbjct: 460 DSDDLI------------PPYLDQYFYSHIGH--HLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 226 -----GQADGTAVGIAP-LAHLAIYK--VCDFDGCSESRVYAAMD--------TAIDDGV 269
A + I L L YK +CD D E V A +D
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 270 DVLSLSLGAASVPFFEDPLAIGSFSAIQK 298
D+L ++L A FE+ + +Q+
Sbjct: 566 DLLRIALMAEDEAIFEE-----AHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 3e-04
Identities = 53/443 (11%), Positives = 108/443 (24%), Gaps = 167/443 (37%)
Query: 26 DTDSLE---TY--IVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSS-----INNQP-- 73
D ++ E Y I+ V + + D +P SI S I
Sbjct: 8 DFETGEHQYQYKDILSVFEDA-------FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 74 -----RMLYCY----KNVITGF------------AAKLTAE-QAKAMETKEGFISA---- 107
R+ + + ++ F + + E + +M T+ +I
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM-YIEQRDRL 119
Query: 108 ----------HV---EKTLQLHT-----THTPNFLGLHQNSGFWKDSNLGKGVIIG--VM 147
+V + L+L N + + G GK + +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-VLIDGVLGS------GKTWVALDVCL 172
Query: 148 DTGITPGHPSFSDEGMPPPPAKW--KGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEG 205
+ + W C ++ L +P
Sbjct: 173 SYKV---------QCKMDFKIFWLNLKNCN-----SPETVLEMLQKLL-YQIDPNWTSRS 217
Query: 206 HGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVC--DFDGCSESRVYAAMD- 262
+ +N+ + + L Y+ C ++ + A +
Sbjct: 218 DHS-------------SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 263 ------TAIDDGV-DVLS------LSLGAASVPFFED----------------------- 286
T V D LS +SL S+ D
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 287 --PLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGN- 343
P + + ++ +T N W V I +S+ +
Sbjct: 325 TNPRRLSIIAESIRD------------GLATWDN---W-KHVNCDKLTTIIESSLNVLEP 368
Query: 344 ---QAVYDGEALFQPKD--FPSK 361
+ ++D ++F P P+
Sbjct: 369 AEYRKMFDRLSVF-PPSAHIPTI 390
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 5e-04
Identities = 49/391 (12%), Positives = 106/391 (27%), Gaps = 96/391 (24%)
Query: 390 GKLVL----CERGGGERTKKGQV----VKDAGGIGMILMNDKLNGYSTLADPHLLPAVHV 441
GK + C + ++ +K+ +L + L DP+
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL--EMLQKLLYQIDPNWTSRSDH 219
Query: 442 SYA-------AGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFS--------SRGP 486
S ++ + S N +V V ++ +F+ +R
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-V---QNAKAWNAFNLSCKILLTTRFK 275
Query: 487 SIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC-PH---------L 536
+ L + + KS P L
Sbjct: 276 QVTD--FLSAATTTHISLDHHSMTLT---PDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 537 SGVAALLKS--AHPDWSPAAIKSAIMTTADIVSLDG-KPIVDQRLLPADMFAVGAGHVNP 593
S +A ++ A D + T + SL+ +P +++ D +
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIE-SSLNVLEPAEYRKMF--DRLS-------- 379
Query: 594 SSANDPGLIYDIQPDD-YIPY--LCGL--NYSDQHVQDIVMINVQCSKVSGIAETELNYP 648
+ P +IP L + + V +V + K S + +
Sbjct: 380 -----------VFPPSAHIPTILLSLIWFDVIKSDVMVVV---NKLHKYSLVEK---QPK 422
Query: 649 SFSVILGSTSQTYNRTVTNVGQAESSYTHK-IVAPEGVTVTVEPENISFTKKNQKAIYS- 706
++ + S + N H+ IV + T + +++ + YS
Sbjct: 423 ESTISIPSIYLELKVKLENEYAL-----HRSIVDHYNIPKTFDSDDLI-PPYLDQYFYSH 476
Query: 707 -----ITFTRSQKTSALFAQGYL--SWVSTK 730
++ + LF +L ++ K
Sbjct: 477 IGHHLKNIEHPERMT-LFRMVFLDFRFLEQK 506
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Length = 421 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 379 CSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMND---KLNGYSTLADPHL 435
+ ++ GK+ L +RG K + G +I+ N+ KLNG +D
Sbjct: 104 TTADVAGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASF 163
Query: 436 LPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKST 475
+ AV ++ G+++ A + + AT+ G + ++
Sbjct: 164 VAAVGITKQEGDALAANLRAGEKITATVKVAGAEVKTLTS 203
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 742 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.91 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.86 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 99.01 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.97 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.84 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.73 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.49 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.48 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.43 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 96.49 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 95.6 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 94.69 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 94.19 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 92.9 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 89.76 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 88.13 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 87.44 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 87.43 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 86.44 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-118 Score=1032.59 Aligned_cols=613 Identities=40% Similarity=0.694 Sum_probs=558.2
Q ss_pred cCCCCCccCccCCCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccc----cCccccceeecC
Q 048043 117 TTHTPNFLGLHQNSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAA----CNNKLIGARNFL 192 (742)
Q Consensus 117 ~~~s~~~~g~~~~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f----~n~ki~~~~~~~ 192 (742)
++++|+|+|+.+..++|..+.+|+||+|||||||||++||+|.+.++++++.+|+|.|+.+.+| ||+|++++++|.
T Consensus 1 Tt~s~~flgl~~~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig~~~f~ 80 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFN 80 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEEEEECC
T ss_pred CCCChHHcCCCCchhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceeeeEecc
Confidence 4678999999877889999999999999999999999999999999999999999999999888 999999999997
Q ss_pred CCC---------CCCCCCCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHH
Q 048043 193 QGS---------TGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDT 263 (742)
Q Consensus 193 ~~~---------~~~~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ 263 (742)
.+. +..+++|..||||||||||||+..++.+++|++.|.+.||||+|+|++||+++..|+..+++++||+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~Ai~~ 160 (649)
T 3i6s_A 81 KGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQ 160 (649)
T ss_dssp HHHHHHCTTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTEECHHHHHHHHHH
T ss_pred CcccccccccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCCCCHHHHHHHHHH
Confidence 432 23567899999999999999998888888888888899999999999999999888999999999999
Q ss_pred hhhCCCcEEEEccCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCC
Q 048043 264 AIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGN 343 (742)
Q Consensus 264 a~~~g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~ 343 (742)
|+++|+||||||||+...++..+++..++++|.++|++||+||||+|+...++++.+||+|+|||++.||.|...+.+++
T Consensus 161 A~~~gvdVIn~SlG~~~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~~~lgn 240 (649)
T 3i6s_A 161 AVADGVDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGN 240 (649)
T ss_dssp HHHTTCSEEEECCCCCSCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEEEEETT
T ss_pred HHHcCCCEEEeCCccCCcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceeeEEEeCC
Confidence 99999999999999987777889999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCC-CCc--cceEEEeecCCcchhhhhHHHhhcCCeEEEEe
Q 048043 344 QAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLS-SNI--RGKLVLCERGGGERTKKGQVVKDAGGIGMILM 420 (742)
Q Consensus 344 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~--~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~ 420 (742)
++++.+.+++..... ...+|++|.. ....|.+..++ .++ +|||++|.|+.|.+.+|..+++.+|+.|+|++
T Consensus 241 g~~~~g~sl~~~~~~-~~~~plv~~~-----~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~ 314 (649)
T 3i6s_A 241 GLKIRGWSLFPARAF-VRDSPVIYNK-----TLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFIS 314 (649)
T ss_dssp SCEEEEECCCSSCBC-EEEEEEECCT-----TTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEEC
T ss_pred CcEEeeeecccCccc-CcceeeEecc-----cccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEe
Confidence 999999999887643 6679999976 35679888777 666 99999999999999999999999999999999
Q ss_pred ccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEe
Q 048043 421 NDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIG 500 (742)
Q Consensus 421 ~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~A 500 (742)
|+. .....+.+.+|.+.|+..+|..|++|++++.+++++|.+..+..+..+.+.+++||||||+...++++||||+|
T Consensus 315 n~~---~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~ilKPDI~A 391 (649)
T 3i6s_A 315 EDP---GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILA 391 (649)
T ss_dssp CCG---GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSCSCCEEE
T ss_pred cCc---cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCCCCCCCCCccCCeEEe
Confidence 986 44566788999999999999999999999999999999999999888999999999999999888999999999
Q ss_pred cCCcEEeccCCCccC----CCC-CcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCcccc
Q 048043 501 PGVNILAAWPFSVEN----KTN-TKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVD 575 (742)
Q Consensus 501 PG~~I~sa~~~~~~~----~~~-~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~ 575 (742)
||++|+++|+....+ .+. +...|..+||||||||||||+||||||+||+|+|++||++||+||++++..+.++.+
T Consensus 392 PG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~~i~~ 471 (649)
T 3i6s_A 392 PGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKD 471 (649)
T ss_dssp ECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSSBCEE
T ss_pred CCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCCcccc
Confidence 999999999874311 111 336899999999999999999999999999999999999999999999999999887
Q ss_pred CC-CCCCCCCcccccccCcCCcCCCCccccCCCCCcccccccCCCCccceeEEEeeeee--ccCCCCCCcccCCCCceee
Q 048043 576 QR-LLPADMFAVGAGHVNPSSANDPGLIYDIQPDDYIPYLCGLNYSDQHVQDIVMINVQ--CSKVSGIAETELNYPSFSV 652 (742)
Q Consensus 576 ~~-~~~~~~~~~G~G~vd~~~Al~~~lv~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ln~ps~~~ 652 (742)
.. +.+++++.||+|+||+.+|++|+||||++.+||++|||++||+.++|+.|++.++. |+. ...+||||||++
T Consensus 472 ~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~~----~~~~lNyPs~~~ 547 (649)
T 3i6s_A 472 SDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSN----PSADLNYPSFIA 547 (649)
T ss_dssp TTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CCC----CCCCCCCSSEEE
T ss_pred cccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCCcCCCCC----chhhcCCCcEEe
Confidence 63 66888999999999999999999999999999999999999999999999988777 975 567999999999
Q ss_pred ee-CCcc-----EEEEEEEEeeCCCCceEEEEEECCCCcEEEEEcCeeEecCCCcEEEEEEEEEEccCCCCceEEEEEEE
Q 048043 653 IL-GSTS-----QTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRSQKTSALFAQGYLSW 726 (742)
Q Consensus 653 ~~-~~~~-----~~~~~tv~n~~~~~~~y~~~~~~p~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~ 726 (742)
.+ .... ++|+|||||||+...+|++.+..|.|++|+|+|++|+|.+.+|+++|+|+|+........|.||+|+|
T Consensus 548 ~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~~~~~fg~l~w 627 (649)
T 3i6s_A 548 LYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITW 627 (649)
T ss_dssp EECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC---CCCEEEEEE
T ss_pred ecccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEecccCCCceEEEEEEE
Confidence 87 4545 89999999999988999999999999999999999999988999999999998755344789999999
Q ss_pred Ec--CceEEEEeEEEEeC
Q 048043 727 VS--TKHTVRSPIAVRFQ 742 (742)
Q Consensus 727 ~~--~~~~v~~p~~v~~~ 742 (742)
++ +.|.||+||+|++.
T Consensus 628 ~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 628 VEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp EETTSCCEEEEEEEEEEC
T ss_pred EcCCCCeEEEEeEEEEEc
Confidence 98 99999999999874
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-108 Score=952.91 Aligned_cols=602 Identities=42% Similarity=0.699 Sum_probs=505.4
Q ss_pred cCCCCCccCccCCCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccc-cCccccceeecCCCC
Q 048043 117 TTHTPNFLGLHQNSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAA-CNNKLIGARNFLQGS 195 (742)
Q Consensus 117 ~~~s~~~~g~~~~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f-~n~ki~~~~~~~~~~ 195 (742)
++++|+|+|+++ .+|.+..+|+||+|||||||||++||+|+++++++++.+|+|.|+.+.+| ||+|++++++|..+.
T Consensus 1 tt~s~~flGl~~--~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~~~n~k~ig~~~~~~~~ 78 (621)
T 3vta_A 1 TTRSWDFLGFPL--TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFRCNRKIIGARSYHIGR 78 (621)
T ss_dssp CCSHHHHTTCCT--TCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSCCCCSSEEEEEECCCSS
T ss_pred CCCChhHcCCCc--cccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCcccCcceeeeeecccCC
Confidence 478899999964 68889999999999999999999999999999999999999999999999 999999999998764
Q ss_pred C-----CCCCCCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhhCCCc
Q 048043 196 T-----GEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVD 270 (742)
Q Consensus 196 ~-----~~~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~ 270 (742)
+ ..+++|++||||||||||||+...+.+..|.+.|.++||||+|+|++||+|++.|+..+++++||+||+++|+|
T Consensus 79 ~~~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~di~~a~~~a~~~g~d 158 (621)
T 3vta_A 79 PISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVD 158 (621)
T ss_dssp SCCTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTEECHHHHHHHHHHHHHHTCS
T ss_pred ccCCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCCCCHHHHHHHHHHHHHhCCC
Confidence 2 45678999999999999999988888888888888999999999999999999889999999999999999999
Q ss_pred EEEEccCCCC-CCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEee
Q 048043 271 VLSLSLGAAS-VPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDG 349 (742)
Q Consensus 271 VIn~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~ 349 (742)
|||||||+.. ..+..++++.++++|.++|+++|+||||+|+...++++.+||+++|++++.++.+...+.++++..+.+
T Consensus 159 Vin~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~~~~~~~~~~~~~ 238 (621)
T 3vta_A 159 IISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQG 238 (621)
T ss_dssp EEEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEEEEEETTSCEEEE
T ss_pred EEEecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccccceeeEEeccCceeee
Confidence 9999999875 346678899999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeccCCCCCCCCceeEEecCCCCCC-----CCCCcCCCCCC-CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccC
Q 048043 350 EALFQPKDFPSKQFPLIYPGANGNV-----SSAQCSPGSLS-SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDK 423 (742)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~c~~~~~~-~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~ 423 (742)
.+++... ...+++++....... ....|.+..++ .+++|||++|.++ +..+..+....|+.+++++++.
T Consensus 239 ~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~---~~~~~~~~~~~Ga~gvi~~~~~ 312 (621)
T 3vta_A 239 VSINTFD---NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEAS---FGPHEFFKSLDGAAGVLMTSNT 312 (621)
T ss_dssp BCCCCSC---CEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSC---CCHHHHHHHHTTCSEEEEECSC
T ss_pred eecccCC---CcccccccccccccccccccccccccccccccccccceEEEEecC---CChhHHhhhhcceeEEEEEecC
Confidence 8876543 345666665543321 34568888888 8999999999865 3456677788899999998875
Q ss_pred CCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCC
Q 048043 424 LNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGV 503 (742)
Q Consensus 424 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~ 503 (742)
.. ..+.+.+|...++..++..++.++.....+.+.+.... .......+.++.||||||+...++++||||+|||+
T Consensus 313 ~~----~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~-~~~~~~~~~va~FSSrGP~~~~~~ilKPDI~APG~ 387 (621)
T 3vta_A 313 RD----YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKST-TILNASAPVVVSFSSRGPNRATKDVIKPDISGPGV 387 (621)
T ss_dssp CS----SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCE-EEECTTCCCBCTTSCCCSCTTCTTSCSCCEEEECS
T ss_pred CC----cccccccceEEECHHHHHHHHHHHhccCCcceEEecce-EeccCCCCceeeecCCCCCCCCCCeeccccccCCc
Confidence 43 34567899999999999999999999888888774443 34456788999999999998888999999999999
Q ss_pred cEEeccCCCc-cCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCC
Q 048043 504 NILAAWPFSV-ENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPAD 582 (742)
Q Consensus 504 ~I~sa~~~~~-~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 582 (742)
+|+|+++... .........|..+||||||||||||+||||||+||+|+|++||++||+||++++..+ .+..
T Consensus 388 ~Ilsa~~~~~~~~~~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~~~~--------~~~~ 459 (621)
T 3vta_A 388 EILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARF--------NPQA 459 (621)
T ss_dssp SEEEECCSSSCBTTBCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTTT--------CTTT
T ss_pred ceEeecCccccccCcCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCcccccC--------CCCC
Confidence 9999998654 222334578999999999999999999999999999999999999999999886554 3567
Q ss_pred CCcccccccCcCCcCCCCccccCCCCCcccccccCCCCccceeEEEeeeeeccCCCCCCcccCCCCceeeeeC---CccE
Q 048043 583 MFAVGAGHVNPSSANDPGLIYDIQPDDYIPYLCGLNYSDQHVQDIVMINVQCSKVSGIAETELNYPSFSVILG---STSQ 659 (742)
Q Consensus 583 ~~~~G~G~vd~~~Al~~~lv~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~---~~~~ 659 (742)
++.||+|+||+.+|++|+||||++.+||+.|+|+++|+.++++.+++....|+........+||||||++.+. ..++
T Consensus 460 ~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~pS~~v~~~~~~~~~~ 539 (621)
T 3vta_A 460 EFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQ 539 (621)
T ss_dssp HHHHTTCBCCHHHHSCCSEECCCCGGGCC-----------------------------CGGGSCCSSEEEECCSSCCEEE
T ss_pred chhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccccccCCCCcCcccccccccEEEEccCCCceEE
Confidence 8899999999999999999999999999999999999999999999999999876667788999999999643 3478
Q ss_pred EEEEEEEeeCCCCceEEEEEECCCCcEEEEEcCeeEecCCCcEEEEEEEEEEccCCCCceEEEEEEEEcCceEEEEeEEE
Q 048043 660 TYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRSQKTSALFAQGYLSWVSTKHTVRSPIAV 739 (742)
Q Consensus 660 ~~~~tv~n~~~~~~~y~~~~~~p~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~~~~~~v~~p~~v 739 (742)
+++|||||+|....+|++++..|.|++|+|+|++|+|++.||+++|+|+|+.... +.++||+|+|+|+.|.||+||+|
T Consensus 540 t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~~~--~~~~~g~l~w~d~~h~Vr~Pi~v 617 (621)
T 3vta_A 540 YFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSIK--GFVVSASLVWSDGVHYVRSPITI 617 (621)
T ss_dssp EEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEECCC--SSEEEEEEEEECSSCCCEEEEEE
T ss_pred EEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEecCC--CceEEEEEEEEcCCEEEEeCEEE
Confidence 9999999999999999999999999999999999999999999999999986532 37999999999999999999999
Q ss_pred Ee
Q 048043 740 RF 741 (742)
Q Consensus 740 ~~ 741 (742)
+.
T Consensus 618 ~~ 619 (621)
T 3vta_A 618 TS 619 (621)
T ss_dssp EC
T ss_pred EE
Confidence 86
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-80 Score=741.55 Aligned_cols=532 Identities=23% Similarity=0.348 Sum_probs=419.5
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccC--------------ccccCccccceeecCCC
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFK--------------GAACNNKLIGARNFLQG 194 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g--------------~~f~n~ki~~~~~~~~~ 194 (742)
+..+|.++++|+||+|||||||||++||+|.+. ..|++.|..+ ..+||+|++++++|.++
T Consensus 6 ~~~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~------~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~ 79 (926)
T 1xf1_A 6 VKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLT------DKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKD 79 (926)
T ss_dssp CHHHHHHHCSCTTCEEEEEESCCTTCCCCCSCC------SCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCC
T ss_pred cHHHHhccCCCCCcEEEEEecCCCCCCHhHcCC------CCCcccccchhhhcccccccCcccccccCcccceeeccccC
Confidence 345999999999999999999999999999853 3465555321 11499999999999876
Q ss_pred CCCCCCCCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC--CCHHHHHHHHHHhhhCCCcEE
Q 048043 195 STGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG--CSESRVYAAMDTAIDDGVDVL 272 (742)
Q Consensus 195 ~~~~~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~~VI 272 (742)
. ...|+.||||||||||||+...+.+. .+.+.||||+|+|+++|++++.+ +..+++++||+||+++|++||
T Consensus 80 ~---~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~~~~~~~i~~Ai~~Ai~~gvdVI 152 (926)
T 1xf1_A 80 G---KTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAINLGAKVI 152 (926)
T ss_dssp S---CCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred C---CCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHhCCcEE
Confidence 3 33389999999999999986543321 24468999999999999998776 456789999999999999999
Q ss_pred EEccCCCC--CCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCC---------------CCCCCCCCceEEecccCCccee
Q 048043 273 SLSLGAAS--VPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNP---------------STSSNEAPWILSVGASTTDRSI 335 (742)
Q Consensus 273 n~SlG~~~--~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---------------~~~~~~~p~vitVga~~~~~~~ 335 (742)
|||||+.. .....+.+..++..|.++|++||+||||+|... ...++.+||+|+|||++.++.+
T Consensus 153 n~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vitVgA~~~~~~~ 232 (926)
T 1xf1_A 153 NMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQL 232 (926)
T ss_dssp EECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSEEEEEEBCSEEE
T ss_pred EECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceEEEecccccccc
Confidence 99999864 234566788889999999999999999999632 1233458999999999999999
Q ss_pred EEEEEe-CCCeeEeeeeccCCCCC-CCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcC
Q 048043 336 VASVEL-GNQAVYDGEALFQPKDF-PSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAG 413 (742)
Q Consensus 336 ~~~~~~-~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g 413 (742)
...+.+ +++....+.+++...++ ....+|+++... .|.+..+ .+++|||++|+|+.|.+.+|..+++.+|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~-------g~~~~~~-~~v~Gkivl~~rg~~~~~~k~~~~~~~G 304 (926)
T 1xf1_A 233 TETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR-------GTKEDDF-KDVKGKIALIERGDIDFKDKIAKAKKAG 304 (926)
T ss_dssp EEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT-------SCSTTTT-TTCTTSEEEEECCSSCHHHHHHHHHHTT
T ss_pred ccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC-------CCCccch-hhcCCeEEEEECCCCCHHHHHHHHHhCC
Confidence 888887 55544444444332222 356799998764 3765444 7899999999999999999999999999
Q ss_pred CeEEEEeccCCCCcc-ccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeE--ecccCCCccccccCCCCCCCC
Q 048043 414 GIGMILMNDKLNGYS-TLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTV--IGKKSTPELASFSSRGPSIAS 490 (742)
Q Consensus 414 ~~~~i~~~~~~~~~~-~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~a~fSs~Gp~~~~ 490 (742)
+.++|++++...... ......++|...++..++..|+. ++..++++..+. +.....+.++.||||||+.
T Consensus 305 a~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~------~~~~ti~~~~~~~~~~~~~~~~~a~FSSrGp~~-- 376 (926)
T 1xf1_A 305 AVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD------NPQKTITFNATPKVLPTASGTKLSRFSSWGLTA-- 376 (926)
T ss_dssp CSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH------CSSCEEEECSSCEEEECSSCSBCCTTSCCCBCT--
T ss_pred CcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh------CCceEEEecccceecccCCcceeccccCCCCCC--
Confidence 999999988654332 23346789999999999998874 345667766543 4556678999999999996
Q ss_pred CCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHH----hhCCCCCHHH----HHHHHHcc
Q 048043 491 PGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLK----SAHPDWSPAA----IKSAIMTT 562 (742)
Q Consensus 491 ~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~----q~~p~~s~~~----ik~~L~~T 562 (742)
++++||||+|||++|+++++. +.|..+||||||||||||+||||+ +.||+|+|+| ||++||+|
T Consensus 377 ~~~lKPDI~APG~~I~sa~~~---------~~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~sp~~~~~~Iks~L~~T 447 (926)
T 1xf1_A 377 DGNIKPDIAAPGQDILSSVAN---------NKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSS 447 (926)
T ss_dssp TSCBSCCEEEECCCEEESSSC---------SSSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHHHHHHHHHHHHHHHH
T ss_pred CCccCceEECCCCCEEeeccC---------CcceecCccchhHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhc
Confidence 789999999999999999987 789999999999999999999996 4699999997 99999999
Q ss_pred cccccCCCCccccCCCCCCCCCcccccccCcCCcCCCCccccCCCCCcccccccCCCCccceeEEEeeeeeccCCCCCCc
Q 048043 563 ADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSANDPGLIYDIQPDDYIPYLCGLNYSDQHVQDIVMINVQCSKVSGIAE 642 (742)
Q Consensus 563 A~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~lv~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (742)
|+++...+. ..++++++||+|+||+.+|+++.+ |+|..+++...
T Consensus 448 A~~~~~~~~------~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~~------------------- 491 (926)
T 1xf1_A 448 ATALYDEDE------KAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSSK------------------- 491 (926)
T ss_dssp SBCCEEGGG------TEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCSC-------------------
T ss_pred CCCcccCCC------CccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcce-------------------
Confidence 998754321 224677899999999999999844 57876554322
Q ss_pred ccCCCCceeeeeCCccEEEEEEEEeeCCCC--ceEEEEEEC--CCCcEEEEEcCeeEecCC-------CcEEEEEEEEEE
Q 048043 643 TELNYPSFSVILGSTSQTYNRTVTNVGQAE--SSYTHKIVA--PEGVTVTVEPENISFTKK-------NQKAIYSITFTR 711 (742)
Q Consensus 643 ~~ln~ps~~~~~~~~~~~~~~tv~n~~~~~--~~y~~~~~~--p~~~~v~v~p~~~~~~~~-------g~~~~~~v~~~~ 711 (742)
+.+.......+++|||+|+|+.+ .+|++.+.. |.+..++|+|..|.|... ||+++|+|+|++
T Consensus 492 -------i~l~~~~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~ag~~~~~~vt~~~ 564 (926)
T 1xf1_A 492 -------VHLNNVSDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPIDA 564 (926)
T ss_dssp -------EEEEEECSEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECTTEEEEEEEEEEC
T ss_pred -------eeccccCccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECCCCEEEEEEEEEc
Confidence 22222233688999999999854 567777764 678888888876655433 999999999998
Q ss_pred cc--------CCCCceEEEEEEEE--cCceE-EEEeEEEEe
Q 048043 712 SQ--------KTSALFAQGYLSWV--STKHT-VRSPIAVRF 741 (742)
Q Consensus 712 ~~--------~~~~~~~~G~i~~~--~~~~~-v~~p~~v~~ 741 (742)
+. .+.+.++||+|+|+ ++.|. ||+||++..
T Consensus 565 ~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~ 605 (926)
T 1xf1_A 565 SRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFR 605 (926)
T ss_dssp HHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEE
T ss_pred CccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEe
Confidence 62 13336899999999 56564 999999863
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-62 Score=552.61 Aligned_cols=365 Identities=31% Similarity=0.485 Sum_probs=290.6
Q ss_pred CCceEEEEECCCCCCCCcchhccchHHHHHhhcccccccCCCCCCceEEEEcceeeEEEEEcCHHHHHHh----------
Q 048043 29 SLETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCYKNVITGFAAKLTAEQAKAM---------- 98 (742)
Q Consensus 29 ~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~i~~L---------- 98 (742)
..-+|||.|+++. . .+.+.+.+++. +.++.+.|. .|+||+++++++++++|
T Consensus 34 ~~~~~iV~~~~~~---~--------~~~~~~~~~~~-------g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~ 94 (539)
T 3afg_A 34 QEVSTIIMFDNQA---D--------KEKAVEILDFL-------GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFG 94 (539)
T ss_dssp CEEEEEEEESSHH---H--------HHHHHHHHHHH-------TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---
T ss_pred CceEEEEEECCCC---C--------HHHHHHHHHhc-------CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccc
Confidence 3457999999755 1 11122233322 457899997 69999999999999999
Q ss_pred -hcCCCeEEEEeceeeccccCCC--CCccCccCCCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccc
Q 048043 99 -ETKEGFISAHVEKTLQLHTTHT--PNFLGLHQNSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCE 175 (742)
Q Consensus 99 -~~~p~V~~V~~~~~~~~~~~~s--~~~~g~~~~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~ 175 (742)
+++|+|++|+++..+++..... ...+....+..+|..+++|+||+|||||||||++||+|.+
T Consensus 95 ~~~~~~V~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~--------------- 159 (539)
T 3afg_A 95 NAQLSGVQFIQEDYVVKVAVETEGLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG--------------- 159 (539)
T ss_dssp CCCCTTEEEEEECCEEECC-----------CCBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGTT---------------
T ss_pred cccCCCeeEEEecccccccCccccCCccccccCcHhHHhcCCCCCCcEEEEEecCCCCCChHHhC---------------
Confidence 8899999999999887743321 1112222356799999999999999999999999999974
Q ss_pred cCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCH
Q 048043 176 FKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSE 254 (742)
Q Consensus 176 ~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~ 254 (742)
++++.++|.++. ..+.|+.||||||||||||+... ..|.+.||||+|+|+++|++++.| ++.
T Consensus 160 --------~i~~~~d~~~~~--~~~~D~~gHGThVAgiiag~~~~-------~~g~~~GvAp~A~l~~~kv~~~~g~~~~ 222 (539)
T 3afg_A 160 --------KVIGWVDFVNGK--TTPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLNGQGSGSI 222 (539)
T ss_dssp --------TEEEEEETTTCC--SSCCBSSSHHHHHHHHHHCCCGG-------GTTTTCCSCTTCEEEEEECSCTTSEEEH
T ss_pred --------CEeeeEECCCCC--CCCCCCCCCHHHHHHHHhCcCcc-------CCCCEEEECCCCEEEEEEeecCCCCcCH
Confidence 355566776543 45778999999999999987421 133458999999999999999877 788
Q ss_pred HHHHHHHHHhhhC----CCcEEEEccCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCC--CCCCCCCceEEecc
Q 048043 255 SRVYAAMDTAIDD----GVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPS--TSSNEAPWILSVGA 328 (742)
Q Consensus 255 ~~i~~ai~~a~~~----g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga 328 (742)
+++++||+||+++ |++|||||||........+.+..++.++.++|+++|+||||+|.... ..++..+++|+|||
T Consensus 223 ~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~~~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA 302 (539)
T 3afg_A 223 SDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGA 302 (539)
T ss_dssp HHHHHHHHHHHHTHHHHTEEEEEECCCCCSCCCSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEE
T ss_pred HHHHHHHHHHHhhhhhcCCcEEEeCCCCCCCCccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEee
Confidence 9999999999986 89999999998765556688999999999999999999999998643 45678899999998
Q ss_pred cCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHH
Q 048043 329 STTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQV 408 (742)
Q Consensus 329 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~ 408 (742)
..
T Consensus 303 ~~------------------------------------------------------------------------------ 304 (539)
T 3afg_A 303 VD------------------------------------------------------------------------------ 304 (539)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred ec------------------------------------------------------------------------------
Confidence 42
Q ss_pred HhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCC
Q 048043 409 VKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSI 488 (742)
Q Consensus 409 ~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 488 (742)
..+.+++||||||+.
T Consensus 305 -----------------------------------------------------------------~~~~~a~fSs~Gp~~ 319 (539)
T 3afg_A 305 -----------------------------------------------------------------KYDVITDFSSRGPTA 319 (539)
T ss_dssp -----------------------------------------------------------------TTSCBCSSSCCCCCT
T ss_pred -----------------------------------------------------------------CCcccccccCCCCCC
Confidence 113688999999998
Q ss_pred CCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccC
Q 048043 489 ASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSL 568 (742)
Q Consensus 489 ~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~ 568 (742)
++++||||+|||++|+++++............|..++|||||||||||++|||+|++|+|++++||++|++||+++..
T Consensus 320 --~~~~kpdi~APG~~I~s~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~vk~~L~~tA~~~~~ 397 (539)
T 3afg_A 320 --DNRLKPEVVAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKP 397 (539)
T ss_dssp --TCBCCCSEEEECSSEEEECCTTCCCSEECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSBCSSG
T ss_pred --CCCCcccEecCcCCEEeeccCCCCCCCCCcccccccCchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC
Confidence 689999999999999999865321111112369999999999999999999999999999999999999999998753
Q ss_pred CCCccccCCCCCCCCCcccccccCcCCcCCC
Q 048043 569 DGKPIVDQRLLPADMFAVGAGHVNPSSANDP 599 (742)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~~ 599 (742)
.+ .++..||+|+||+.+|++.
T Consensus 398 ~~----------~~~~~~G~G~vn~~~Al~~ 418 (539)
T 3afg_A 398 DE----------IADIAYGAGRVNAYKAAYY 418 (539)
T ss_dssp GG----------CSBTTTBTCBCCHHHHHTG
T ss_pred CC----------CCccCccCCccCHHHHhhh
Confidence 21 2456899999999999985
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-59 Score=511.16 Aligned_cols=339 Identities=27% Similarity=0.370 Sum_probs=275.9
Q ss_pred CceEEEEECCCCCCCCcchhccchHHHHHhhcccccccCCCCCCceEEEEcceeeEEEEEcCHHHHHHhhcCCCeEEEEe
Q 048043 30 LETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCYKNVITGFAAKLTAEQAKAMETKEGFISAHV 109 (742)
Q Consensus 30 ~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~i~~L~~~p~V~~V~~ 109 (742)
+.+|||+|+++. . ..+ +++ ..+.++.+.|. .+++|+++++++++++|+++|+|++|++
T Consensus 2 ~~~~iV~~~~~~---~-------~~~----~~~-------~~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~ 59 (395)
T 2z2z_A 2 TIRVIVSVDKAK---F-------NPH----EVL-------GIGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEF 59 (395)
T ss_dssp EEEEEEEECTTT---C-------CHH----HHH-------HTTCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEE
T ss_pred cEEEEEEECCCc---c-------HHH----HHH-------HcCCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEE
Confidence 578999999876 1 111 222 23568999998 4999999999999999999999999999
Q ss_pred ceeeccccCCC-----------CCccCccC--CCCCccCCCCCCc--cEEEEEcccCCCCCCCCCCCCCCCCCCcccccc
Q 048043 110 EKTLQLHTTHT-----------PNFLGLHQ--NSGFWKDSNLGKG--VIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKC 174 (742)
Q Consensus 110 ~~~~~~~~~~s-----------~~~~g~~~--~~~~~~~~~~G~g--V~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~ 174 (742)
++.+++..... ...|++.. .+.+|..+ +|+| |+|||||||||++||+|.++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~------------- 125 (395)
T 2z2z_A 60 DHQAVLLGKPSWLGGGSTQPAQTIPWGIERVKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN------------- 125 (395)
T ss_dssp CCEEEECCEECC------CCSCCCCHHHHHTTCGGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGG-------------
T ss_pred eeeecccCCCCcccccccCccccCCcchhhcCHHHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhc-------------
Confidence 99887643211 12354433 45689998 9999 99999999999999999753
Q ss_pred ccCccccCccccceeecCCCCC---CCCCCCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC
Q 048043 175 EFKGAACNNKLIGARNFLQGST---GEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG 251 (742)
Q Consensus 175 ~~g~~f~n~ki~~~~~~~~~~~---~~~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g 251 (742)
+...++|..+.. ..+..|+.||||||||||+|.. + .. .+.||||+|+|+.+|++++.|
T Consensus 126 ----------~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~-n-------~~-g~~GvAp~a~l~~~kv~~~~g 186 (395)
T 2z2z_A 126 ----------IAWCVSTLRGKVSTKLRDCADQNGHGTHVIGTIAALN-N-------DI-GVVGVAPGVQIYSVRVLDARG 186 (395)
T ss_dssp ----------EEEEEECGGGCCBCCHHHHBCSSSHHHHHHHHHHCCC-S-------SS-SCCCSSTTCEEEEEECSCTTS
T ss_pred ----------cccCccccCCcccCCCCCCCCCCCCHHHHHHHHHeec-C-------CC-ceEEECCCCEEEEEEEecCCC
Confidence 222233332210 0124688999999999999872 1 11 247999999999999998877
Q ss_pred -CCHHHHHHHHHHhhhC--------------------CCcEEEEccCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCC
Q 048043 252 -CSESRVYAAMDTAIDD--------------------GVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEG 310 (742)
Q Consensus 252 -~~~~~i~~ai~~a~~~--------------------g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g 310 (742)
++.+++++||+||+++ +++|||||||+.. ....+..++.++.++|+++|+||||+|
T Consensus 187 ~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AAGN~g 263 (395)
T 2z2z_A 187 SGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEG 263 (395)
T ss_dssp EEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSSC
T ss_pred CccHHHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 7888999999999988 9999999999863 235677788889999999999999999
Q ss_pred CCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccc
Q 048043 311 PNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRG 390 (742)
Q Consensus 311 ~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g 390 (742)
.....+++..+++|+|||..
T Consensus 264 ~~~~~~Pa~~~~vi~Vga~~------------------------------------------------------------ 283 (395)
T 2z2z_A 264 APSPSYPAAYPEVIAVGAID------------------------------------------------------------ 283 (395)
T ss_dssp CSSCCBTTTSTTEEEEEEEC------------------------------------------------------------
T ss_pred CCCCCCccCCCCEEEEEEec------------------------------------------------------------
Confidence 88788889999999999842
Q ss_pred eEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEe
Q 048043 391 KLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVI 470 (742)
Q Consensus 391 ~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~ 470 (742)
T Consensus 284 -------------------------------------------------------------------------------- 283 (395)
T 2z2z_A 284 -------------------------------------------------------------------------------- 283 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCC--
Q 048043 471 GKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHP-- 548 (742)
Q Consensus 471 ~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-- 548 (742)
..+.+++||+||| +|+|||++|+++++. +.|..++|||||||||||++|||+|++|
T Consensus 284 ---~~~~~a~fS~~G~----------~v~APG~~i~s~~~~---------~~y~~~sGTS~AaP~VaG~aAll~~~~p~~ 341 (395)
T 2z2z_A 284 ---SNDNIASFSNRQP----------EVSAPGVDILSTYPD---------DSYETLMGTAMATPHVSGVVALIQAAYYQK 341 (395)
T ss_dssp ---TTSCBCTTSCSSC----------SEEEECSSEEEEETT---------TEEEEEESHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCCcccCCCC----------CEEeCCCCeeeecCC---------CceEecCCHHHHHHHHHHHHHHHHHhCccc
Confidence 1236889999997 679999999999987 7899999999999999999999999999
Q ss_pred -----------CCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCcCCC
Q 048043 549 -----------DWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSANDP 599 (742)
Q Consensus 549 -----------~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~~ 599 (742)
.|++.+||++|++||+++... ..+..||||+||+.+|++.
T Consensus 342 ~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~-----------g~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 342 YGKILPVGTFDDISKNTVRGILHITADDLGPT-----------GWDADYGYGVVRAALAVQA 392 (395)
T ss_dssp HSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSS-----------SSBTTTBTCBCCHHHHHHH
T ss_pred cccccccccccCCCHHHHHHHHHhhccccCCC-----------CCCCCccCceeCHHHHHHH
Confidence 999999999999999987432 2457899999999999864
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-58 Score=524.72 Aligned_cols=335 Identities=18% Similarity=0.222 Sum_probs=59.5
Q ss_pred CceEEEEECCCCCCCCcchhccchHHHHHhhcccccccCCCCCCceEEEEcceeeEEEEEcCHHHHHHhhcCCCeEEEEe
Q 048043 30 LETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCYKNVITGFAAKLTAEQAKAMETKEGFISAHV 109 (742)
Q Consensus 30 ~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~i~~L~~~p~V~~V~~ 109 (742)
+++|||+||++. .... ...+.+++...+++. ....++++.|.+.|+||+++++++++++|+++|+|++|++
T Consensus 75 pg~YIV~lk~~~---~~~~-~~~~~~~l~a~~~~~-----g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vep 145 (692)
T 2p4e_P 75 PGTYVVVLKEET---HLSQ-SERTARRLQAQAARR-----GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEE 145 (692)
T ss_dssp EEEEEEEECTTC---CHHH-HHHHHHHHHHHHHHT-----TCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEE
T ss_pred CCcEEEEECCCC---CHHH-HHHHHHHHHHHHhhc-----ccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEe
Confidence 469999999987 4333 233444444333221 3456899999999999999999999999999999999999
Q ss_pred ceeeccccCCCCCccCccCC------CCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCc
Q 048043 110 EKTLQLHTTHTPNFLGLHQN------SGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNN 183 (742)
Q Consensus 110 ~~~~~~~~~~s~~~~g~~~~------~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ 183 (742)
+..++.. ...|++.++ ...|..+.+|+||+|||||||||++||+|.++.. |.+... +..
T Consensus 146 d~~v~~~----~~pWgL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~~~~~----~~d- 210 (692)
T 2p4e_P 146 DSSVFAQ----SIPWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VTDFEN----VPE- 210 (692)
T ss_dssp EEEEEEC-------------------------------------------------------------------------
T ss_pred ccccccC----CCCcchhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCceE------eccccc----ccC-
Confidence 9987652 122555442 2368888999999999999999999999986421 100000 000
Q ss_pred cccceeecCCCCCCCCCCCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHH
Q 048043 184 KLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMD 262 (742)
Q Consensus 184 ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~ 262 (742)
.....| ...+.|.+||||||||||+|+. .||||+|+|+++||+++.| ++.+++++||+
T Consensus 211 --~dg~~~-----~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI~ 269 (692)
T 2p4e_P 211 --EDGTRF-----HRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLE 269 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --CCCCcc-----cCCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEeecCCCCCCHHHHHHHHH
Confidence 000001 1345789999999999999873 6999999999999999877 78889999999
Q ss_pred HhhhC------CCcEEEEccCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCC-CCCCCCceEEecccCCccee
Q 048043 263 TAIDD------GVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPST-SSNEAPWILSVGASTTDRSI 335 (742)
Q Consensus 263 ~a~~~------g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVga~~~~~~~ 335 (742)
|++++ +++|||||||+... ..+..++.++.++|++||+||||+|.+... +++..|++|+|||++.+...
T Consensus 270 ~a~~~~~~~~~g~~VINmSlGg~~s----~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~~ 345 (692)
T 2p4e_P 270 FIRKSQLVQPVGPLVVLLPLAGGYS----RVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhhcccCCceEEEecCCCCCc----HHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCCc
Confidence 99986 89999999997643 445556668889999999999999987643 47888999999995322100
Q ss_pred EEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCe
Q 048043 336 VASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGI 415 (742)
Q Consensus 336 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~ 415 (742)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcc
Q 048043 416 GMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILK 495 (742)
Q Consensus 416 ~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~K 495 (742)
...-+.||+|||.
T Consensus 346 -----------------------------------------------------------a~~ss~fSn~G~~-------- 358 (692)
T 2p4e_P 346 -----------------------------------------------------------VTLGTLGTNFGRC-------- 358 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------------------------------------cccccccCCCCCc--------
Confidence 0001238999974
Q ss_pred cceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccccc
Q 048043 496 PDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVS 567 (742)
Q Consensus 496 PDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~ 567 (742)
|||+|||++|+++++... ..|..++|||||||||||++|||+|++|+|+|++||++|++||.+..
T Consensus 359 vDI~APG~~I~St~~~~~-------~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~tA~~~~ 423 (692)
T 2p4e_P 359 VDLFAPGEDIIGASSDCS-------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDV 423 (692)
T ss_dssp ------------------------------------------------------------------------
T ss_pred eeEEecCCcEEeeccCCC-------CceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccc
Confidence 599999999999988632 57899999999999999999999999999999999999999998653
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-56 Score=501.49 Aligned_cols=334 Identities=20% Similarity=0.267 Sum_probs=263.3
Q ss_pred CCceEEEEcceeeEEEEEcCHHHHHHhhc-CCCeEEEEeceeeccccCCC----------CCccCccC---CCCCccCCC
Q 048043 72 QPRMLYCYKNVITGFAAKLTAEQAKAMET-KEGFISAHVEKTLQLHTTHT----------PNFLGLHQ---NSGFWKDSN 137 (742)
Q Consensus 72 ~~~~~~~y~~~~~g~s~~~~~~~i~~L~~-~p~V~~V~~~~~~~~~~~~s----------~~~~g~~~---~~~~~~~~~ 137 (742)
+.++.+.|.. |++|+++++++++++|++ +|+|++|+++..+++..... ...|++.. ...+|..++
T Consensus 65 g~~v~~~~~~-~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~~~ 143 (471)
T 3t41_A 65 SLNVVYNIPE-LHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDDLP 143 (471)
T ss_dssp TCEEEEEEGG-GTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGGCC
T ss_pred CCEEEEecCC-ccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccCcHHHHhccC
Confidence 5678888864 999999999999999999 99999999998877654322 12344443 236899999
Q ss_pred CCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhccc
Q 048043 138 LGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGN 217 (742)
Q Consensus 138 ~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~ 217 (742)
+|+||+|||||||||++||+|.++... +....- ......+... ....+...+.|..||||||||||+|+
T Consensus 144 ~G~gv~VaViDtGid~~Hp~~~~~~~~-------~~~~~~---~~~~~~~~~~-~~~~~~~~~~d~~gHGT~vAgiiaa~ 212 (471)
T 3t41_A 144 KHANTKIAIIDTGVMKNHDDLKNNFST-------DSKNLV---PLNGFRGTEP-EETGDVHDVNDRKGHGTMVSGQTSAN 212 (471)
T ss_dssp SSCCCCEEEEESCCCTTCTTTTTTBCT-------TCEECC---CTTCGGGCCT-TCCCCTTCCCCSSSHHHHHHHHHHCB
T ss_pred CCCCcEEEEEeCCCCCCChhHhcCccc-------CCcccc---cCCCccCCCc-ccCCCCCCCcCCCCccchhhheeecC
Confidence 999999999999999999999864211 100000 0000000000 00011235678999999999999976
Q ss_pred ccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhhCCCcEEEEccCCCCC-C------------CC
Q 048043 218 FVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASV-P------------FF 284 (742)
Q Consensus 218 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~-~------------~~ 284 (742)
. .+.||||+|+|+.+|++++.++..+++++||+||++++++|||||||.... . ..
T Consensus 213 g------------~~~GvAp~a~l~~~kv~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~ 280 (471)
T 3t41_A 213 G------------KLIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVE 280 (471)
T ss_dssp S------------SSBCSSTTSCEEEEECCSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEEEECTTCCCSEESSCHHH
T ss_pred C------------ceeEECCCCeEEEEEeccCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCccccccccccccchh
Confidence 2 147999999999999998866889999999999999999999999997321 0 12
Q ss_pred CCHHHHHHHHhhcCCcEEEEecCCCCCCCCC------------------CCCCCCceEEecccCCcceeEEEEEeCCCee
Q 048043 285 EDPLAIGSFSAIQKEIFVSCSAGNEGPNPST------------------SSNEAPWILSVGASTTDRSIVASVELGNQAV 346 (742)
Q Consensus 285 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~------------------~~~~~p~vitVga~~~~~~~~~~~~~~~g~~ 346 (742)
.+.+..++..+.++|++||+||||+|..... .++..+++|+|||++
T Consensus 281 ~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~---------------- 344 (471)
T 3t41_A 281 YDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTD---------------- 344 (471)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEEEEEEC----------------
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCeEEEEeeC----------------
Confidence 2457778888889999999999999987542 567788999999842
Q ss_pred EeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCC
Q 048043 347 YDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNG 426 (742)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~ 426 (742)
T Consensus 345 -------------------------------------------------------------------------------- 344 (471)
T 3t41_A 345 -------------------------------------------------------------------------------- 344 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCc--
Q 048043 427 YSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVN-- 504 (742)
Q Consensus 427 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~-- 504 (742)
..+.+++||++||+. |||+|||++
T Consensus 345 -----------------------------------------------~~~~~a~fS~~G~~~-------~di~APG~~i~ 370 (471)
T 3t41_A 345 -----------------------------------------------QKSNLSEFSNFGMNY-------TDIAAPGGSFA 370 (471)
T ss_dssp -----------------------------------------------TTSSBCTTCCBCTTT-------CCEEEECCCCH
T ss_pred -----------------------------------------------CCCCCCCccCCCCCC-------CeEEecCCCcc
Confidence 123688999999974 599999987
Q ss_pred --------------------EEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCC-CCCHHHHHHHHHccc
Q 048043 505 --------------------ILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHP-DWSPAAIKSAIMTTA 563 (742)
Q Consensus 505 --------------------I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~~s~~~ik~~L~~TA 563 (742)
|+++++. +.|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 371 ~~~~~g~~~~~~~~~~~~~~i~s~~~~---------~~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA 441 (471)
T 3t41_A 371 YLNQFGVDKWMNEGYMHKENILTTANN---------GRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHG 441 (471)
T ss_dssp HHHHHHHHHHHHTTTHHHHSEEEECTT---------SSEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHS
T ss_pred cccccccccccccccccCceeEecCCC---------CCEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhC
Confidence 8999887 7899999999999999999999999999 899999999999999
Q ss_pred ccccCCCCccccCCCCCCCCCcccccccCcCCcCCCC
Q 048043 564 DIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSANDPG 600 (742)
Q Consensus 564 ~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~ 600 (742)
++... .++..||||+||+.+|++..
T Consensus 442 ~~~~~------------~~~~~~G~G~vd~~~Al~~a 466 (471)
T 3t41_A 442 TSKNN------------KPFSRYGHGELDVYKALNVA 466 (471)
T ss_dssp BCCSC------------CCHHHHTTCBBCHHHHTTTT
T ss_pred CCCCC------------CCcCccccChhCHHHHHHHH
Confidence 97632 35678999999999999853
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-55 Score=487.56 Aligned_cols=382 Identities=26% Similarity=0.369 Sum_probs=275.4
Q ss_pred cCccC--CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCC
Q 048043 124 LGLHQ--NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPL 201 (742)
Q Consensus 124 ~g~~~--~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~ 201 (742)
|+++. +..+|..+ |+||+|||||||||++||+|.++ .| ..+++....+...+.
T Consensus 6 W~l~~i~~~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~-------~~----------------~~~~~~~~~~~~~~~ 60 (441)
T 1y9z_A 6 WGQTFVGATVLSDSQ--AGNRTICIIDSGYDRSHNDLNAN-------NV----------------TGTNNSGTGNWYQPG 60 (441)
T ss_dssp HHHHHTTCSSSCCTT--GGGCEEEEEESCCCTTSTTTTTS-------EE----------------EECCCTTSCCTTCCC
T ss_pred CChhhcChhhhhhcC--CCCcEEEEEcCCCCCCChhHhcC-------cc----------------cCcccCCCCCCCCCC
Confidence 44443 46688865 77999999999999999999853 11 112222211123567
Q ss_pred CCCCCchhhhhhhcccccCCCcccccCCcceeeecCcc--eEEEEEEeccCC-CCHHHHHHHHHHhhhC-CCcEEEEccC
Q 048043 202 DDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLA--HLAIYKVCDFDG-CSESRVYAAMDTAIDD-GVDVLSLSLG 277 (742)
Q Consensus 202 d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A--~l~~~kv~~~~g-~~~~~i~~ai~~a~~~-g~~VIn~SlG 277 (742)
|..||||||||||+|... ..+ +.||||+| +|+.+|+++..| ++.+++++||+||+++ |++|||||||
T Consensus 61 d~~gHGT~vAgiia~~~~--------~~g-~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~g~~Vin~S~G 131 (441)
T 1y9z_A 61 NNNAHGTHVAGTIAAIAN--------NEG-VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLG 131 (441)
T ss_dssp SSCCHHHHHHHHHHCCCS--------SSB-CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCC
T ss_pred CCCCcHHHHHHHHhcccC--------CCC-ceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHhcCCcEEEeCCC
Confidence 889999999999998741 122 47999995 999999998877 7888999999999999 9999999999
Q ss_pred CCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeE-------------------EE
Q 048043 278 AASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIV-------------------AS 338 (742)
Q Consensus 278 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~-------------------~~ 338 (742)
.... ...+..++.++.++|++||+||||+|.....+++..+++|+|||.+.+.... ..
T Consensus 132 ~~~~---~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~ApG~~i~s~ 208 (441)
T 1y9z_A 132 GSGS---TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILST 208 (441)
T ss_dssp BSCC---BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEEECSSEEEE
T ss_pred CCCC---CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEeccCCeecc
Confidence 8742 2456777888999999999999999998888899999999999987654321 11
Q ss_pred EEeCCCe----eEeeeeccCCCCCCCC-cee--EEecCC--CC--CCCCCCcCCC--CCC-CCccceEEEeecCCc----
Q 048043 339 VELGNQA----VYDGEALFQPKDFPSK-QFP--LIYPGA--NG--NVSSAQCSPG--SLS-SNIRGKLVLCERGGG---- 400 (742)
Q Consensus 339 ~~~~~g~----~~~~~~~~~~~~~~~~-~~~--~~~~~~--~~--~~~~~~c~~~--~~~-~~~~g~iv~~~~g~~---- 400 (742)
...+++. .+.+.+++.....+.. .++ ..|... .+ ......|... .++ .+++|||++|+|+.|
T Consensus 209 ~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~C~~~~~~~~~~~~~gkivl~~rg~~~~~~ 288 (441)
T 1y9z_A 209 VTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSS 288 (441)
T ss_dssp CSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECCSCSSSS
T ss_pred ccCCCcccceeecccccccccccCcccccccCCccccccccccccccchhccccccccccCCCccccEEEEeccccCccc
Confidence 1111221 2222332211100000 000 011100 00 0122347644 334 789999999999876
Q ss_pred -chhhhhHHHhhcCCeEEEEeccCCCCc------cccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEeccc
Q 048043 401 -ERTKKGQVVKDAGGIGMILMNDKLNGY------STLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKK 473 (742)
Q Consensus 401 -~~~~~~~~~~~~g~~~~i~~~~~~~~~------~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~ 473 (742)
.+.+|..+++++|+.++|++++..... ........+|.+.++..+|..|+.++.+. .+
T Consensus 289 ~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~----~t----------- 353 (441)
T 1y9z_A 289 YPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS----TT----------- 353 (441)
T ss_dssp CTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE----EE-----------
T ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC----cc-----------
Confidence 678899999999999999998754311 11223567999999999999998876321 11
Q ss_pred CCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHH
Q 048043 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPA 553 (742)
Q Consensus 474 ~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~ 553 (742)
+ ++... +.|..++|||||||||||++|||+|+||+|+|+
T Consensus 354 ------------------------~--------~~~~~---------~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~ 392 (441)
T 1y9z_A 354 ------------------------V--------SNQGN---------QDYEYYNGTSMATPHVSGVATLVWSYHPECSAS 392 (441)
T ss_dssp ------------------------E--------EEEEE---------ESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHH
T ss_pred ------------------------c--------ccccC---------CCceeecccccCCcccchHHHHHHHHCCCCCHH
Confidence 1 11112 689999999999999999999999999999999
Q ss_pred HHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCcCCCCccccCCCCCcccccccCCCC
Q 048043 554 AIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSANDPGLIYDIQPDDYIPYLCGLNYS 620 (742)
Q Consensus 554 ~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~lv~~~~~~d~~~~~~~~~~~ 620 (742)
+||++||+||++++..+ .+..||+|+||+.+|++ |+.|+|+++++
T Consensus 393 ~ik~~L~~TA~~~~~~g-----------~~~~~G~G~vn~~~A~~-----------~~~~lc~~~~~ 437 (441)
T 1y9z_A 393 QVRAALNATADDLSVAG-----------RDNQTGYGMINAVAAKA-----------YLDESCTGPTD 437 (441)
T ss_dssp HHHHHHHHHSBCCSSSS-----------CBTTTBTCBCCHHHHHH-----------HHHHCTTCC--
T ss_pred HHHHHHHhhchhhccCC-----------CcccccccccCHHHHHH-----------HHHhhhcCCCC
Confidence 99999999999886543 35679999999999964 89999998753
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-55 Score=500.97 Aligned_cols=370 Identities=22% Similarity=0.294 Sum_probs=273.2
Q ss_pred CCCCceEEEEECCCCCCCCcchhccchHHHHHhhcccccccCCCCCCceEEEEcceeeEEEEEcCH----HHHHHhh--c
Q 048043 27 TDSLETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCYKNVITGFAAKLTA----EQAKAME--T 100 (742)
Q Consensus 27 ~~~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~----~~i~~L~--~ 100 (742)
...+++|||.|++.. . ..+ +++.. +.++.+++. .+++++++++. +.+++|+ +
T Consensus 28 ~~~~~~~IV~~k~~~---~-------~~~----~~~~~-------g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~ 85 (671)
T 1r6v_A 28 EYTEGKILVGYNDRS---E-------VDK----IVKAV-------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALA 85 (671)
T ss_dssp SBCTTEEEEEESSHH---H-------HHH----HHHHH-------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSC
T ss_pred ccCCccEEEEECCCc---C-------HHH----HHHhc-------CCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhcc
Confidence 346899999999754 1 111 22221 346777877 58899999864 3456676 4
Q ss_pred CCCeEEEEeceeecccc----C---C--------------------CCCccCccC--CCCC-ccCCCCCCccEEEEEccc
Q 048043 101 KEGFISAHVEKTLQLHT----T---H--------------------TPNFLGLHQ--NSGF-WKDSNLGKGVIIGVMDTG 150 (742)
Q Consensus 101 ~p~V~~V~~~~~~~~~~----~---~--------------------s~~~~g~~~--~~~~-~~~~~~G~gV~VaVIDtG 150 (742)
+|+|++|||+..+++.. . . ....|++.. +..+ |+. ++|+||+|||||||
T Consensus 86 ~~~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I~~~~a~w~~-~tG~gV~VAVIDTG 164 (671)
T 1r6v_A 86 LKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEE-ASGTNIIVAVVDTG 164 (671)
T ss_dssp CSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHH-CSCTTCEEEEEESC
T ss_pred CCCceEEecCeEEEeccccccCcccccccccccccccccccccccccccCCchhccCCchhhhhc-cCCCCCEEEEEeCC
Confidence 89999999997655421 0 0 011344333 3456 888 89999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhcccccCCCcccccCCc
Q 048043 151 ITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADG 230 (742)
Q Consensus 151 id~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g 230 (742)
||++||+|.++- +.+.. + ..+ .....+ .+..|..||||||||||||.. ++.|
T Consensus 165 Vd~~HpdL~~~~-------~~g~~-----~----~~~-~~~p~~---~d~~d~~gHGThVAGiIAa~~--------ng~g 216 (671)
T 1r6v_A 165 VDGTHPDLEGQV-------IAGYR-----P----AFD-EELPAG---TDSSYGGSAGTHVAGTIAAKK--------DGKG 216 (671)
T ss_dssp CBTTSGGGTTTB-------CCEEE-----G----GGT-EEECTT---CBCCTTCSHHHHHHHHHHCCC--------SSSS
T ss_pred CCCCCccccccE-------Eeccc-----c----cCC-CcCCCC---CCCccCCCcchhhhhhhhccC--------CCCc
Confidence 999999998641 11100 0 000 001111 234567899999999999873 1122
Q ss_pred ceeeecCcceEEEEEEecc------CC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCHHHHHHHHhhcCCcEEE
Q 048043 231 TAVGIAPLAHLAIYKVCDF------DG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVS 303 (742)
Q Consensus 231 ~~~GvAP~A~l~~~kv~~~------~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV 303 (742)
+.||||+|+|+.+|+++. .+ ...+.+++||+||+++|++|||||||+.. +...+..++..+.++|+++|
T Consensus 217 -v~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~---~s~~l~~Ai~~A~~~GvlvV 292 (671)
T 1r6v_A 217 -IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG---YSYTMKEAFDYAMEHGVVMV 292 (671)
T ss_dssp -CCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEE
T ss_pred -eEEECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC---CCHHHHHHHHHHHhCCCEEE
Confidence 479999999999999976 23 44567999999999999999999999863 34577888889999999999
Q ss_pred EecCCCCCCC-CCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCC
Q 048043 304 CSAGNEGPNP-STSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPG 382 (742)
Q Consensus 304 ~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 382 (742)
+||||+|.+. ..+++..|++|+|||...+.
T Consensus 293 aAAGN~g~~~~~~yPA~~~~VItVgA~d~~g------------------------------------------------- 323 (671)
T 1r6v_A 293 VSAGNNTSDSHHQYPAGYPGVIQVAALDYYG------------------------------------------------- 323 (671)
T ss_dssp EECCSCSSSCCCCBTTTSTTCEEEEEEEEET-------------------------------------------------
T ss_pred EeCCCCCCCCCccCcccCCCeEEEEEEcCCC-------------------------------------------------
Confidence 9999999875 56778899999999952110
Q ss_pred CCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEE
Q 048043 383 SLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNAT 462 (742)
Q Consensus 383 ~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 462 (742)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T 1r6v_A 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccC---------CCCCcccceeeccccchh
Q 048043 463 IVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVEN---------KTNTKSTFNMVAGTSMSC 533 (742)
Q Consensus 463 i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~---------~~~~~~~y~~~sGTSmAa 533 (742)
....+++|||+||.. ||+|||++|+++++..... .....+.|..++||||||
T Consensus 324 -----------~~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~~~y~~~sGTSmAA 384 (671)
T 1r6v_A 324 -----------GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAA 384 (671)
T ss_dssp -----------TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHH
T ss_pred -----------CceeeccccCCCCCe--------eEEecCCCEEeecCCCCccccccccccccccCCCceEEecCccHHH
Confidence 001478999999976 9999999999998763210 011235799999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCcCCCCccccCCCCCc
Q 048043 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSANDPGLIYDIQPDDY 610 (742)
Q Consensus 534 P~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~lv~~~~~~d~ 610 (742)
|||||++|||+|++|++++.+||++|++||+++... ..+..||||+||+.+|++..+..+....+|
T Consensus 385 P~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~-----------g~d~~~G~G~vna~~Al~~~l~~~~~~~~~ 450 (671)
T 1r6v_A 385 PHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN-----------GWDHDTGYGLVKLDAALQGPLPTQGGVEEF 450 (671)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSS-----------SCBTTTBTCBCCHHHHHHCCCCSSSEEEEE
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCC-----------CCCCCcccceeCHHHHhhhhcCCCCCccce
Confidence 999999999999999999999999999999987533 245689999999999999877766544333
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-53 Score=438.60 Aligned_cols=261 Identities=33% Similarity=0.517 Sum_probs=222.4
Q ss_pred cCccC--CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCC
Q 048043 124 LGLHQ--NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPL 201 (742)
Q Consensus 124 ~g~~~--~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~ 201 (742)
|++.. ++.+|..+++|+||+|+|||||| .+||+|+ +...++|..+. ..+.
T Consensus 6 W~l~~i~~~~a~~~g~~G~gv~VaViDtGi-~~h~~l~-------------------------~~~~~~~~~~~--~~~~ 57 (269)
T 1gci_A 6 WGISRVQAPAAHNRGLTGSGVKVAVLDTGI-STHPDLN-------------------------IRGGASFVPGE--PSTQ 57 (269)
T ss_dssp HHHHHTTHHHHHHTTCSCTTCEEEEEESCC-CCCTTCC-------------------------EEEEEECSTTC--CSCS
T ss_pred cChhhcCcHHHHhcCCCCCCCEEEEECCCC-CCCHhhc-------------------------ccCCcccCCCC--CCCC
Confidence 45443 45689999999999999999999 8999994 12234555432 3467
Q ss_pred CCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCC
Q 048043 202 DDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAAS 280 (742)
Q Consensus 202 d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~ 280 (742)
|..||||||||||+|... .. .+.||||+|+|+.+|+++..+ +..+++++||+|+++++++|||||||...
T Consensus 58 d~~gHGT~vAgiia~~~~--------~~-~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~Vin~S~G~~~ 128 (269)
T 1gci_A 58 DGNGHGTHVAGTIAALNN--------SI-GVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS 128 (269)
T ss_dssp CSSSHHHHHHHHHHCCCS--------SS-BCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSS
T ss_pred CCCCChHHHHHHHhcCcC--------CC-CcEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC
Confidence 899999999999998621 11 247999999999999998776 77889999999999999999999999873
Q ss_pred CCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCC
Q 048043 281 VPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPS 360 (742)
Q Consensus 281 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 360 (742)
....+..++.++.++|+++|+||||+|.....+++..+++|+||+..
T Consensus 129 ---~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~------------------------------ 175 (269)
T 1gci_A 129 ---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATD------------------------------ 175 (269)
T ss_dssp ---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC------------------------------
T ss_pred ---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeec------------------------------
Confidence 24577788888999999999999999998888888999999999842
Q ss_pred CceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEE
Q 048043 361 KQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVH 440 (742)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~ 440 (742)
T Consensus 176 -------------------------------------------------------------------------------- 175 (269)
T 1gci_A 176 -------------------------------------------------------------------------------- 175 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCc
Q 048043 441 VSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTK 520 (742)
Q Consensus 441 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 520 (742)
..+.+++||++||.+ ||+|||++|+++++.
T Consensus 176 ---------------------------------~~~~~~~~S~~G~~~--------di~APG~~i~s~~~~--------- 205 (269)
T 1gci_A 176 ---------------------------------QNNNRASFSQYGAGL--------DIVAPGVNVQSTYPG--------- 205 (269)
T ss_dssp ---------------------------------TTSCBCTTCCCSTTE--------EEEEECSSEEEEETT---------
T ss_pred ---------------------------------CCCCCCCCCCCCCCc--------ceEecCCCeEeecCC---------
Confidence 123678999999865 999999999999887
Q ss_pred ccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCcCC
Q 048043 521 STFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSAND 598 (742)
Q Consensus 521 ~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 598 (742)
+.|..++|||||||||||++|||+|++|+|++.|||++|++||+++. ++..||+|+||+.+|++
T Consensus 206 ~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g--------------~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 206 STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG--------------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS--------------CHHHHTTCBCCHHHHTC
T ss_pred CCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC--------------CCCCcccCccCHHHHcC
Confidence 78999999999999999999999999999999999999999999773 34679999999999985
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-53 Score=440.97 Aligned_cols=262 Identities=31% Similarity=0.496 Sum_probs=220.6
Q ss_pred cCccC--CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCC
Q 048043 124 LGLHQ--NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPL 201 (742)
Q Consensus 124 ~g~~~--~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~ 201 (742)
|++.. ++.+|..+++|+||+|||||||||++||+|+ +...++|..+. ....
T Consensus 6 w~l~~i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~-------------------------~~~g~~~~~~~--~~~~ 58 (274)
T 1r0r_E 6 YGIPLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLN-------------------------VVGGASFVAGE--AYNT 58 (274)
T ss_dssp THHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-------------------------EEEEEECSTTC--CTTC
T ss_pred CchhhcCCHHHHhcCCCCCCCEEEEEcCCCCCCCHhHc-------------------------CCCCccccCCC--CCCC
Confidence 45443 4568999999999999999999999999994 12234454432 3456
Q ss_pred CCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCC
Q 048043 202 DDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAAS 280 (742)
Q Consensus 202 d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~ 280 (742)
|..||||||||||+|... .. .+.||||+|+|+.+|+++..+ ++.++++++|+|+++++++|||||||...
T Consensus 59 d~~gHGT~vAgiia~~~~--------~~-g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~ 129 (274)
T 1r0r_E 59 DGNGHGTHVAGTVAALDN--------TT-GVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS 129 (274)
T ss_dssp CSSSHHHHHHHHHHCCSS--------SS-BCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSS
T ss_pred CCCCCHHHHHHHHHccCC--------CC-ceEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 889999999999998621 11 247999999999999998877 77889999999999999999999999874
Q ss_pred CCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCC----CCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCC
Q 048043 281 VPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNP----STSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPK 356 (742)
Q Consensus 281 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 356 (742)
....+..++.++.++|+++|+||||+|... ..++...+++|+||+..
T Consensus 130 ---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~-------------------------- 180 (274)
T 1r0r_E 130 ---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVD-------------------------- 180 (274)
T ss_dssp ---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEEC--------------------------
T ss_pred ---CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEec--------------------------
Confidence 245778888899999999999999999763 45577788999999842
Q ss_pred CCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccc
Q 048043 357 DFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLL 436 (742)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~ 436 (742)
T Consensus 181 -------------------------------------------------------------------------------- 180 (274)
T 1r0r_E 181 -------------------------------------------------------------------------------- 180 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCC
Q 048043 437 PAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENK 516 (742)
Q Consensus 437 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 516 (742)
..+.++.||++||. |||+|||.+|+++++.
T Consensus 181 -------------------------------------~~~~~~~~S~~G~~--------~di~APG~~i~s~~~~----- 210 (274)
T 1r0r_E 181 -------------------------------------SNSNRASFSSVGAE--------LEVMAPGAGVYSTYPT----- 210 (274)
T ss_dssp -------------------------------------TTSCBCTTCCCSTT--------EEEEEECSSEEEEETT-----
T ss_pred -------------------------------------CCCCcCccCCCCCC--------ceEEeCCCCeEeecCC-----
Confidence 12367899999985 4999999999999887
Q ss_pred CCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCc
Q 048043 517 TNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSA 596 (742)
Q Consensus 517 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A 596 (742)
+.|..++|||||||||||++|||+|++|++++++||++|++||+++. ++..||+|+||+.+|
T Consensus 211 ----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g--------------~~~~~G~G~~~~~~A 272 (274)
T 1r0r_E 211 ----NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG--------------SSFYYGKGLINVEAA 272 (274)
T ss_dssp ----TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS--------------CHHHHTTCBCCHHHH
T ss_pred ----CCEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC--------------CCCCcccCccCHHHH
Confidence 78999999999999999999999999999999999999999999772 346899999999999
Q ss_pred CC
Q 048043 597 ND 598 (742)
Q Consensus 597 l~ 598 (742)
++
T Consensus 273 ~~ 274 (274)
T 1r0r_E 273 AQ 274 (274)
T ss_dssp TC
T ss_pred hC
Confidence 85
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-52 Score=437.87 Aligned_cols=265 Identities=31% Similarity=0.431 Sum_probs=216.6
Q ss_pred ccCccC--CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCC
Q 048043 123 FLGLHQ--NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPP 200 (742)
Q Consensus 123 ~~g~~~--~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~ 200 (742)
+|++.. +..+|+.+..|+||+|||||||||++||+|.++ ++..++|.++. ..+
T Consensus 12 ~w~l~~i~~~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~-----------------------~~~~~~~~~~~--~~~ 66 (280)
T 1dbi_A 12 QYGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK-----------------------VIKGYDFVDND--YDP 66 (280)
T ss_dssp CCTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT-----------------------EEEEEETTTTB--SCC
T ss_pred CCChhhcCcHHHHhhcCCCCCCEEEEEeCCcCCCChhhccC-----------------------cccceeccCCC--CCC
Confidence 355544 456899988888999999999999999999753 34456666543 456
Q ss_pred CCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCC
Q 048043 201 LDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAA 279 (742)
Q Consensus 201 ~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~ 279 (742)
.|..+|||||||||+|...+. ..+.||||+|+|+.+|+++..+ ++.+++++||+||+++|++|||||||..
T Consensus 67 ~d~~gHGT~vAgiia~~~~~~--------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~G~~ 138 (280)
T 1dbi_A 67 MDLNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCD 138 (280)
T ss_dssp CCSSSHHHHHHHHHHCCCSSS--------SSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSC
T ss_pred CCCCCcHHHHHHHHhCcCCCC--------CcceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC
Confidence 789999999999999874221 1247999999999999998877 7888999999999999999999999986
Q ss_pred CCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCC
Q 048043 280 SVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFP 359 (742)
Q Consensus 280 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 359 (742)
. ....+..++.++.++|+++|+||||+|.....+++..+++|+||+..
T Consensus 139 ~---~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~----------------------------- 186 (280)
T 1dbi_A 139 C---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD----------------------------- 186 (280)
T ss_dssp C---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEEC-----------------------------
T ss_pred C---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeC-----------------------------
Confidence 3 34577888888999999999999999988777888899999999842
Q ss_pred CCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEE
Q 048043 360 SKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAV 439 (742)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~ 439 (742)
T Consensus 187 -------------------------------------------------------------------------------- 186 (280)
T 1dbi_A 187 -------------------------------------------------------------------------------- 186 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCC
Q 048043 440 HVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNT 519 (742)
Q Consensus 440 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~ 519 (742)
..+.+++||++||.. ||+|||++|+++++.
T Consensus 187 ----------------------------------~~~~~~~~S~~G~~~--------dv~ApG~~i~s~~~~-------- 216 (280)
T 1dbi_A 187 ----------------------------------QYDRLASFSNYGTWV--------DVVAPGVDIVSTITG-------- 216 (280)
T ss_dssp ----------------------------------TTSCBCTTBCCSTTC--------CEEEECSSEEEEETT--------
T ss_pred ----------------------------------CCCCcCCCCCCCCCc--------eEEEecCCeEeecCC--------
Confidence 123678999999865 999999999999887
Q ss_pred cccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCcCC
Q 048043 520 KSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSAND 598 (742)
Q Consensus 520 ~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 598 (742)
+.|..++|||||||||||++|||++ |++++.+||++|++||+++.. ....||+|+||+.+|++
T Consensus 217 -~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~-------------~~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 217 -NRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISG-------------TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp -TEEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTT-------------BTTTBSSEECCHHHHHT
T ss_pred -CCEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCC-------------CCCcccCCEECHHHHhc
Confidence 7899999999999999999999987 899999999999999998742 22469999999999875
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-52 Score=438.12 Aligned_cols=264 Identities=33% Similarity=0.524 Sum_probs=221.0
Q ss_pred cCccC--CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCC
Q 048043 124 LGLHQ--NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPL 201 (742)
Q Consensus 124 ~g~~~--~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~ 201 (742)
|++.. ...+|..+++|+||+|||||||||++||+|+. ...++|..+. .....
T Consensus 6 w~l~~i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~~-------------------------~~g~~~~~~~-~~~~~ 59 (281)
T 1to2_E 6 YGVSQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKV-------------------------AGGASMVPSE-TNPFQ 59 (281)
T ss_dssp HHHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCCE-------------------------EEEEECCTTC-CCTTC
T ss_pred cchhhcChHHHHhcCCCCCCCEEEEEcCCCCCCCHHHcC-------------------------cCCccccCCC-CCCCC
Confidence 55543 35689999999999999999999999999952 1223444321 12236
Q ss_pred CCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCC
Q 048043 202 DDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAAS 280 (742)
Q Consensus 202 d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~ 280 (742)
|..||||||||||+|... .. .+.||||+|+|+.+|+++.++ +..++++++|+|+++++++|||||||...
T Consensus 60 d~~gHGT~vAgiia~~~~--------~~-g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~ 130 (281)
T 1to2_E 60 DNNSHGTHVAGTVAALNN--------SI-GVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130 (281)
T ss_dssp CSSSHHHHHHHHHHCCSS--------SS-SBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSC
T ss_pred CCCCcHHHHHHHHhccCC--------CC-cceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCCcEEEECCcCCC
Confidence 889999999999998621 11 247999999999999998776 77889999999999999999999999873
Q ss_pred CCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCC----CCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCC
Q 048043 281 VPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNP----STSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPK 356 (742)
Q Consensus 281 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 356 (742)
....+..++.++.++|+++|+||||+|... ..++...|++|+||+..
T Consensus 131 ---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~-------------------------- 181 (281)
T 1to2_E 131 ---GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVD-------------------------- 181 (281)
T ss_dssp ---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEEC--------------------------
T ss_pred ---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEec--------------------------
Confidence 245778888889999999999999999763 45677889999999842
Q ss_pred CCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccc
Q 048043 357 DFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLL 436 (742)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~ 436 (742)
T Consensus 182 -------------------------------------------------------------------------------- 181 (281)
T 1to2_E 182 -------------------------------------------------------------------------------- 181 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCC
Q 048043 437 PAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENK 516 (742)
Q Consensus 437 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 516 (742)
..+.+++||++||.. ||+|||.+|+++++.
T Consensus 182 -------------------------------------~~~~~~~fS~~G~~~--------di~APG~~i~s~~~~----- 211 (281)
T 1to2_E 182 -------------------------------------SSNQRASFSSVGPEL--------DVMAPGVSIQSTLPG----- 211 (281)
T ss_dssp -------------------------------------TTSCBCTTCCCSTTC--------CEEEECSSEEEEETT-----
T ss_pred -------------------------------------CCCCcCCcCCCCCCc--------eEEecCCCeEeecCC-----
Confidence 123678999999865 999999999999887
Q ss_pred CCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCc
Q 048043 517 TNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSA 596 (742)
Q Consensus 517 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A 596 (742)
+.|..++|||||||||||++|||+|++|+|++++||++|++||+++. ++..||||+||+.+|
T Consensus 212 ----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g--------------~~~~~G~G~v~~~~a 273 (281)
T 1to2_E 212 ----NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG--------------DSFYYGKGLINVQAA 273 (281)
T ss_dssp ----TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS--------------CHHHHTTCBCCHHHH
T ss_pred ----CCEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC--------------CCCCcccceecHHHH
Confidence 78999999999999999999999999999999999999999999872 356899999999999
Q ss_pred CCC
Q 048043 597 NDP 599 (742)
Q Consensus 597 l~~ 599 (742)
+++
T Consensus 274 ~~~ 276 (281)
T 1to2_E 274 AQH 276 (281)
T ss_dssp TSS
T ss_pred hhh
Confidence 985
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-51 Score=432.54 Aligned_cols=258 Identities=32% Similarity=0.474 Sum_probs=220.3
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCch
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGT 208 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGT 208 (742)
++.+|+.. +|+||+|||||||||++||+|.++ ++..++|.++. ..+.|..+|||
T Consensus 20 ~~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~-----------------------~~~~~~~~~~~--~~~~d~~gHGT 73 (279)
T 1thm_A 20 APQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK-----------------------VVGGWDFVDND--STPQNGNGHGT 73 (279)
T ss_dssp HHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT-----------------------EEEEEETTTTB--SCCCCSSSHHH
T ss_pred hHHHHhcC-CCCCCEEEEEccCCCCCCcchhcC-----------------------ccccccccCCC--CCCCCCCCcHH
Confidence 45689887 799999999999999999999753 34455666543 45678999999
Q ss_pred hhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCH
Q 048043 209 HTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDP 287 (742)
Q Consensus 209 hVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~ 287 (742)
||||||+|...++ . .+.||||+|+|+.+|+++..+ ++.+++++||+||++++++|||||||... ....
T Consensus 74 ~vAgiia~~~~n~-------~-g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~---~~~~ 142 (279)
T 1thm_A 74 HCAGIAAAVTNNS-------T-GIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTV---GNSG 142 (279)
T ss_dssp HHHHHHHCCCSSS-------S-SCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS---CCHH
T ss_pred HHHHHHhCccCCC-------C-ccEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHHCCCCEEEEecCCCC---CCHH
Confidence 9999999874321 1 247999999999999998776 77889999999999999999999999873 3457
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEe
Q 048043 288 LAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIY 367 (742)
Q Consensus 288 ~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 367 (742)
+..++.++.++|+++|+||||+|.....+++..+++|+||+..
T Consensus 143 l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~------------------------------------- 185 (279)
T 1thm_A 143 LQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTD------------------------------------- 185 (279)
T ss_dssp HHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEEC-------------------------------------
T ss_pred HHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeC-------------------------------------
Confidence 7888889999999999999999988888888899999999842
Q ss_pred cCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHH
Q 048043 368 PGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGE 447 (742)
Q Consensus 368 ~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~ 447 (742)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 1thm_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeec
Q 048043 448 SIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVA 527 (742)
Q Consensus 448 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~s 527 (742)
..+.++.||++||.. ||+|||++|+++++. +.|..++
T Consensus 186 --------------------------~~~~~~~fS~~G~~~--------dv~APG~~i~s~~~~---------~~~~~~s 222 (279)
T 1thm_A 186 --------------------------QNDNKSSFSTYGSWV--------DVAAPGSSIYSTYPT---------STYASLS 222 (279)
T ss_dssp --------------------------TTSCBCTTCCCCTTC--------CEEEECSSEEEEETT---------TEEEEEC
T ss_pred --------------------------CCCCcCCcCCCCCce--------EEEEcCCCeEEEeCC---------CCEEEcc
Confidence 123678999999865 999999999999987 7899999
Q ss_pred cccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCcCC
Q 048043 528 GTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSAND 598 (742)
Q Consensus 528 GTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 598 (742)
|||||||||||++||| ++|.+++++||++|++||+++...+ ..||+|+||+.+|++
T Consensus 223 GTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~~-------------~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 223 GTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGTG-------------TYWAKGRVNAYKAVQ 278 (279)
T ss_dssp SHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTBT-------------TTBSSEECCHHHHHH
T ss_pred cHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCCC-------------ccccCCeeCHHHHhc
Confidence 9999999999999999 5799999999999999999875321 469999999999875
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-53 Score=457.10 Aligned_cols=292 Identities=19% Similarity=0.215 Sum_probs=199.1
Q ss_pred CCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccc---cCccc-----------cceeecCCCC
Q 048043 130 SGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAA---CNNKL-----------IGARNFLQGS 195 (742)
Q Consensus 130 ~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f---~n~ki-----------~~~~~~~~~~ 195 (742)
.++|.++..|++|+|||||||||++||+|++....+....|+..++..... .+..+ .....+..+
T Consensus 21 ~~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 99 (357)
T 4h6x_A 21 ADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEKEEALEAVIPD- 99 (357)
T ss_dssp HHHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHHHHHHHHHHTCCSHHHHHHHHHHCTT-
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCcccccccccccCccccccccccccccccCC-
Confidence 358999999999999999999999999999877777777887765533211 00000 000011111
Q ss_pred CCCCCCCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccC-----C-CCHHHHHHHHHHhhhCCC
Q 048043 196 TGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFD-----G-CSESRVYAAMDTAIDDGV 269 (742)
Q Consensus 196 ~~~~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~-----g-~~~~~i~~ai~~a~~~g~ 269 (742)
..++.|.+||||||||||+|+.. +.+.||||+|+|+.+|++... + ....+++++|+|++++|+
T Consensus 100 -~~~~~D~~gHGThVAGiiag~~~----------~g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~~g~ 168 (357)
T 4h6x_A 100 -TKDRIVLNDHACHVTSTIVGQEH----------SPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGA 168 (357)
T ss_dssp -THHHHHHHHHHHHHHHHHHCCTT----------SSCCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHHTTC
T ss_pred -CCCCcCCCCcHHHHHHHHhccCC----------CCceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHHcCC
Confidence 12345678999999999998732 124799999999999997532 1 345578999999999999
Q ss_pred cEEEEccCCCC-CCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEe
Q 048043 270 DVLSLSLGAAS-VPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYD 348 (742)
Q Consensus 270 ~VIn~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~ 348 (742)
+|||||||... .....+.+..++.++.++|+++|+||||+|.....+++..+++|+|||+.
T Consensus 169 ~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~------------------ 230 (357)
T 4h6x_A 169 NIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAK------------------ 230 (357)
T ss_dssp SEEEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEEC------------------
T ss_pred CEEeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEec------------------
Confidence 99999999864 33456778888889999999999999999988888888899999999842
Q ss_pred eeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcc
Q 048043 349 GEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYS 428 (742)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~ 428 (742)
T Consensus 231 -------------------------------------------------------------------------------- 230 (357)
T 4h6x_A 231 -------------------------------------------------------------------------------- 230 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEec
Q 048043 429 TLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAA 508 (742)
Q Consensus 429 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa 508 (742)
..+.+++|||||+.. .||||+|||++|+++
T Consensus 231 ---------------------------------------------~~~~~~~fSn~G~~~-----~~~di~APG~~i~s~ 260 (357)
T 4h6x_A 231 ---------------------------------------------VDGTPCHFSNWGGNN-----TKEGILAPGEEILGA 260 (357)
T ss_dssp ---------------------------------------------TTSSBCTTCC---CT-----TTTEEEEECSSEEEC
T ss_pred ---------------------------------------------cCCcccccccCCCCC-----CccceeecCCCeEec
Confidence 124788999999753 589999999999999
Q ss_pred cCCCccCCCCCcccceeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCC
Q 048043 509 WPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKS----AHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMF 584 (742)
Q Consensus 509 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~ 584 (742)
++.. +.|..++|||||||||||++|||++ ++|.|+++|||++|++||++++... ...+.
T Consensus 261 ~~~~--------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~~---------~~~~~ 323 (357)
T 4h6x_A 261 QPCT--------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV---------VEEPE 323 (357)
T ss_dssp CTTC--------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC----------------------
T ss_pred cCCC--------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCCC---------CCCcc
Confidence 8763 4677899999999999999999995 4678999999999999999875322 23456
Q ss_pred cccccccCcCCcCC
Q 048043 585 AVGAGHVNPSSAND 598 (742)
Q Consensus 585 ~~G~G~vd~~~Al~ 598 (742)
+||+|+||+.+|++
T Consensus 324 ~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 324 RCLRGFVNIPGAMK 337 (357)
T ss_dssp -CTTCBCCHHHHHH
T ss_pred cceeEEecHHHHHH
Confidence 89999999999987
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-52 Score=444.89 Aligned_cols=269 Identities=29% Similarity=0.441 Sum_probs=219.1
Q ss_pred ccCccC--CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCC--CCC
Q 048043 123 FLGLHQ--NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGS--TGE 198 (742)
Q Consensus 123 ~~g~~~--~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~--~~~ 198 (742)
.|+++. +..+|..+++|+||+|||||||||++||+|.++ +...++|..++ +..
T Consensus 22 ~w~l~~i~~~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~~-----------------------~~~~~~~~~~~~~~~~ 78 (327)
T 2x8j_A 22 PMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAER-----------------------IIGGVNLTTDYGGDET 78 (327)
T ss_dssp CHHHHHTTHHHHHHHHGGGTTCEEEEEESCCCTTCTTTGGG-----------------------EEEEEECSSGGGGCTT
T ss_pred CcchhhcChHHHHhcCCCCCCCEEEEEcCCCCCCChhHhhc-----------------------ccCCccccCCCCCCCC
Confidence 455543 456999999999999999999999999999742 33344554432 112
Q ss_pred CCCCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhh------CCCcE
Q 048043 199 PPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAID------DGVDV 271 (742)
Q Consensus 199 ~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~------~g~~V 271 (742)
...|..||||||||||+|... +. .+.||||+|+|+.+|+++..+ ++.+++++||+||++ ++++|
T Consensus 79 ~~~d~~gHGT~VAgiia~~~~--------~~-g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~V 149 (327)
T 2x8j_A 79 NFSDNNGHGTHVAGTVAAAET--------GS-GVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRI 149 (327)
T ss_dssp CCCCSSSHHHHHHHHHHCCCC--------SS-BCCCSSTTCEEEEEECSCTTSEECHHHHHHHHHHHHHCCCTTSCCCSE
T ss_pred CCCCCCCchHHHHHHHhccCC--------CC-CcEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHhhcccccCCceE
Confidence 357899999999999998731 11 247999999999999998877 778899999999999 89999
Q ss_pred EEEccCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCC-----CCCCCCCCceEEecccCCcceeEEEEEeCCCee
Q 048043 272 LSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNP-----STSSNEAPWILSVGASTTDRSIVASVELGNQAV 346 (742)
Q Consensus 272 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~ 346 (742)
||||||... ....+..++.++.++|++||+||||+|... ..+|+..+++|+|||++
T Consensus 150 in~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~---------------- 210 (327)
T 2x8j_A 150 ITMSLGGPT---DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVD---------------- 210 (327)
T ss_dssp EEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEEC----------------
T ss_pred EEECCCcCC---CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEEC----------------
Confidence 999999863 245777888889999999999999999752 45677889999999842
Q ss_pred EeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCC
Q 048043 347 YDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNG 426 (742)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~ 426 (742)
T Consensus 211 -------------------------------------------------------------------------------- 210 (327)
T 2x8j_A 211 -------------------------------------------------------------------------------- 210 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEE
Q 048043 427 YSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNIL 506 (742)
Q Consensus 427 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~ 506 (742)
..+.++.||++||. |||+|||++|+
T Consensus 211 -----------------------------------------------~~~~~~~fS~~G~~--------~di~APG~~i~ 235 (327)
T 2x8j_A 211 -----------------------------------------------FDLRLSDFTNTNEE--------IDIVAPGVGIK 235 (327)
T ss_dssp -----------------------------------------------TTCCBSCC---CCC--------CSEEEECSSEE
T ss_pred -----------------------------------------------CCCCCCCccCCCCC--------ceEecCcCceE
Confidence 12367899999985 49999999999
Q ss_pred eccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhh-----CCCCCHHHHHHHHHcccccccCCCCccccCCCCCC
Q 048043 507 AAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSA-----HPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPA 581 (742)
Q Consensus 507 sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-----~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~ 581 (742)
++++. +.|..++|||||||||||++|||+|+ +|.+++.+||++|++||+++. .
T Consensus 236 s~~~~---------~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g-------------~ 293 (327)
T 2x8j_A 236 STYLD---------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIG-------------F 293 (327)
T ss_dssp EECST---------TCEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECCS-------------S
T ss_pred eecCC---------CCEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccCC-------------C
Confidence 99887 78999999999999999999999999 999999999999999999763 2
Q ss_pred CCCcccccccCcCCcCCC
Q 048043 582 DMFAVGAGHVNPSSANDP 599 (742)
Q Consensus 582 ~~~~~G~G~vd~~~Al~~ 599 (742)
++..+|+|+||+.+|++.
T Consensus 294 ~~~~~G~G~vd~~~A~~~ 311 (327)
T 2x8j_A 294 TAQAEGNGFLTLDLVERI 311 (327)
T ss_dssp CHHHHTTCEECTTHHHHH
T ss_pred CCCceeeeEECHHHHHHh
Confidence 456899999999999873
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-50 Score=431.54 Aligned_cols=285 Identities=27% Similarity=0.403 Sum_probs=228.1
Q ss_pred ccCccC--CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCC--CC
Q 048043 123 FLGLHQ--NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGST--GE 198 (742)
Q Consensus 123 ~~g~~~--~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~--~~ 198 (742)
.|+++. +..+|..+++|+||+|||||||||++||+|.++ +...++|..... ..
T Consensus 7 ~W~l~~i~~~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~-----------------------~~~~~~~~~~~~~~~~ 63 (310)
T 2ixt_A 7 PWGIKAIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN-----------------------VEQCKDFTGATTPINN 63 (310)
T ss_dssp CHHHHHHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT-----------------------EEEEEESSSSSSCEET
T ss_pred CCchhhcCchhhhhccCCCCCcEEEEEecCCCCCCHHHhhc-----------------------ccccccccCCCCCCCC
Confidence 355544 577999999999999999999999999999853 223344543311 12
Q ss_pred CCCCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCC-----cEE
Q 048043 199 PPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGV-----DVL 272 (742)
Q Consensus 199 ~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~-----~VI 272 (742)
...|..||||||||||+|.... ....+.||||+|+|+.+|++.+.+ ++.++++++|+|++++++ +||
T Consensus 64 ~~~d~~gHGT~vAgiia~~~~~-------n~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~Vi 136 (310)
T 2ixt_A 64 SCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTII 136 (310)
T ss_dssp CCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCCCCHHHHHHHHhccCCC-------CCCceEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhhhccCCCeEE
Confidence 3568899999999999987421 122347999999999999998776 688899999999999988 999
Q ss_pred EEccCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCC--CCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeee
Q 048043 273 SLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPN--PSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGE 350 (742)
Q Consensus 273 n~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~--~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~ 350 (742)
|||||... ....+..++.++.++|+++|+||||+|.. ...+++..+++|+||+.....
T Consensus 137 n~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~----------------- 196 (310)
T 2ixt_A 137 SMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ----------------- 196 (310)
T ss_dssp EECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE-----------------
T ss_pred EEcCCCCC---CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc-----------------
Confidence 99999874 24567778888999999999999999976 355678889999999842100
Q ss_pred eccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcccc
Q 048043 351 ALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTL 430 (742)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~ 430 (742)
T Consensus 197 -------------------------------------------------------------------------------- 196 (310)
T 2ixt_A 197 -------------------------------------------------------------------------------- 196 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCC--ccccccCCCCCCCC----CCCcccceEecCCc
Q 048043 431 ADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTP--ELASFSSRGPSIAS----PGILKPDIIGPGVN 504 (742)
Q Consensus 431 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~a~fSs~Gp~~~~----~~~~KPDI~APG~~ 504 (742)
..+ .++.||++||.... .++.||||+|||.+
T Consensus 197 -------------------------------------------~~g~~~~~~~S~~G~~~~~g~~~~~~~~~di~ApG~~ 233 (310)
T 2ixt_A 197 -------------------------------------------QNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSS 233 (310)
T ss_dssp -------------------------------------------ETTEEEECTTSCCCCTTTTTSSSCCTTCCCEEEECSS
T ss_pred -------------------------------------------cCCCeeeccccCCCCccCCccccccCCCeeEECCCCC
Confidence 011 57889999995321 13459999999999
Q ss_pred EEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCC
Q 048043 505 ILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMF 584 (742)
Q Consensus 505 I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~ 584 (742)
|+++++. +.|..++|||||||||||++|||+|++|+|++.+||++|++||++++..+. ....+.++.
T Consensus 234 i~s~~~~---------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~----~~a~~g~d~ 300 (310)
T 2ixt_A 234 VYSTWYN---------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGG----YGAAIGDDY 300 (310)
T ss_dssp EEEECTT---------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBS----TTCCSSSBT
T ss_pred EeeecCC---------CCEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCC----cccccCCcc
Confidence 9999887 789999999999999999999999999999999999999999998764331 112456778
Q ss_pred cccccccCc
Q 048043 585 AVGAGHVNP 593 (742)
Q Consensus 585 ~~G~G~vd~ 593 (742)
.+|||++|+
T Consensus 301 ~~G~G~~~v 309 (310)
T 2ixt_A 301 ASGFGFARV 309 (310)
T ss_dssp TTBTCBCCC
T ss_pred ccccceeec
Confidence 999999986
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-51 Score=434.09 Aligned_cols=264 Identities=24% Similarity=0.310 Sum_probs=212.0
Q ss_pred CCCC-CccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhh
Q 048043 136 SNLG-KGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTA 214 (742)
Q Consensus 136 ~~~G-~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGii 214 (742)
.++| +||+|||||||||++||+|.++. +..+++..........|.+||||||||||
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~~-----------------------~~~~~~~~~~~~~~d~~~~gHGT~VAGii 59 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGAD-----------------------LTVLPTLAPTAARSDGFMSAHGTHVASII 59 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTCE-----------------------EEECCCSSCCCCCTTCHHHHHHHHHHHHH
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCCe-----------------------eecCcCCCCCCCCCCCCCCCcccceeehh
Confidence 3678 69999999999999999998541 11122222211123334678999999999
Q ss_pred cccccCCCcccccCCcceeeecCcceEEEEEEeccCC--CCHHHHHHHHHHhhhCCCcEEEEccCCCCC-CCCCCHHHHH
Q 048043 215 AGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG--CSESRVYAAMDTAIDDGVDVLSLSLGAASV-PFFEDPLAIG 291 (742)
Q Consensus 215 aG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~-~~~~~~~~~a 291 (742)
+|+... .+.||||+|+|+.+|++.+++ .+..+++++|+||++++++|||||||.... ......+..+
T Consensus 60 ag~~~~----------~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~~~~~~~a 129 (282)
T 3zxy_A 60 FGQPET----------SVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTDFGEADGWLENA 129 (282)
T ss_dssp HCCTTS----------SSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSSCCCHHHHHH
T ss_pred hccCCc----------eeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCccccccccccHHHHHH
Confidence 987421 247999999999999986543 677889999999999999999999997542 2334567778
Q ss_pred HHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCC
Q 048043 292 SFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGAN 371 (742)
Q Consensus 292 ~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (742)
+..+.++|+++|+||||+|.....++...+++|+|||..
T Consensus 130 i~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~----------------------------------------- 168 (282)
T 3zxy_A 130 VSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMD----------------------------------------- 168 (282)
T ss_dssp HHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEEC-----------------------------------------
T ss_pred HHHHhhcCceEEEecccCCCccccCccccceeEEEEEEc-----------------------------------------
Confidence 888999999999999999998888888899999999842
Q ss_pred CCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHH
Q 048043 372 GNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKA 451 (742)
Q Consensus 372 ~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 451 (742)
T Consensus 169 -------------------------------------------------------------------------------- 168 (282)
T 3zxy_A 169 -------------------------------------------------------------------------------- 168 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccc
Q 048043 452 YINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSM 531 (742)
Q Consensus 452 ~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSm 531 (742)
..+.++.||+||+. ..||||+|||.+|+++++. +.|..++||||
T Consensus 169 ----------------------~~~~~~~~S~~~~~-----~~~~di~ApG~~i~s~~~~---------~~~~~~sGTS~ 212 (282)
T 3zxy_A 169 ----------------------DHGHPLDFSNWGST-----YEQQGILAPGEDILGAKPG---------GGTERLSGTAF 212 (282)
T ss_dssp ----------------------TTSCBCSSSCCCHH-----HHHHEEEEECSSEEEECTT---------SCEEEECSHHH
T ss_pred ----------------------CCCccccccCCCCC-----ccccceeccCcceeeecCC---------CceeecCCCcc
Confidence 12367889999875 4689999999999999988 78999999999
Q ss_pred hhHHHHHHHHHHHhhC----CCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCcCC
Q 048043 532 SCPHLSGVAALLKSAH----PDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSAND 598 (742)
Q Consensus 532 AaP~VAG~aALl~q~~----p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 598 (742)
|||||||++|||++++ |.++|++||++|++||++++.. .+.....+|+|+||+.+|++
T Consensus 213 AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~---------~~~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 213 ATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDD---------APEQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC----------------CGGGTTCBCCHHHHHH
T ss_pred cchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCC---------CCCccCceeeeEeCHHHHHH
Confidence 9999999999999874 7899999999999999977432 23455689999999999986
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=474.61 Aligned_cols=407 Identities=20% Similarity=0.230 Sum_probs=273.0
Q ss_pred ccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCC-CCCCCCCCCCchhhhhhhccccc
Q 048043 141 GVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGST-GEPPLDDEGHGTHTATTAAGNFV 219 (742)
Q Consensus 141 gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~-~~~~~d~~gHGThVAGiiaG~~~ 219 (742)
+|+|||||||+|.+|++...- ..|+...+.+ .| .+.+....++.++.+ .....|++||||||||||||..
T Consensus 214 ~V~VAVIDTG~d~DL~d~~~l------~~Y~~~~dyg-~F-~D~v~~~~n~~Ddgd~~~~v~D~~GHGThVAGIIAa~~- 284 (1354)
T 3lxu_X 214 DGWLTIVDTTEQGDLDQALRI------GEYSRTHETR-NV-DDFLSISVNVHDEGNVLEVVGMSSPHGTHVSSIASGNH- 284 (1354)
T ss_dssp SSCEEEECSSSSCCSSCSEEE------ECTTTTCCCC-EE-SSSCEEEEEEEGGGTEEEEEECCCHHHHHHHHHHCCCC-
T ss_pred CEEEEEEeCCCCCCccccccc------cccccccccc-cc-ccccCCCCccCCCCCccccCCCCCCcHHHHHHHHhcCC-
Confidence 699999999998776655310 0111111111 00 112222333332211 0122478999999999999984
Q ss_pred CCCcccccCCcceeeecCcceEEEEEEeccCC---CCHHHHHHHHHHhhh-----CCCcEEEEccCCCCCCCCCCHHHHH
Q 048043 220 NGANVFGQADGTAVGIAPLAHLAIYKVCDFDG---CSESRVYAAMDTAID-----DGVDVLSLSLGAASVPFFEDPLAIG 291 (742)
Q Consensus 220 ~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~-----~g~~VIn~SlG~~~~~~~~~~~~~a 291 (742)
+ ...+.||||+|+|+.+|+++..+ .+..+++.+|.+|++ +|++|||||||........+.+..+
T Consensus 285 N--------~~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVINmS~G~~~~~~~~~~l~~a 356 (1354)
T 3lxu_X 285 S--------SRDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGEL 356 (1354)
T ss_dssp S--------SSSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEEEECCCCCCSCSSCCHHHHH
T ss_pred C--------CCCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEEEcCCccCCCCCccHHHHHH
Confidence 2 12247999999999999997653 255678888888777 7999999999998644445677778
Q ss_pred HHHhh-cCCcEEEEecCCCCCCCCC--CCC--CCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEE
Q 048043 292 SFSAI-QKEIFVSCSAGNEGPNPST--SSN--EAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLI 366 (742)
Q Consensus 292 ~~~a~-~~Gi~vV~AAGN~g~~~~~--~~~--~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 366 (742)
+.++. ++|++||+||||+|.+... +++ ..+++|+|||+.........
T Consensus 357 I~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~---------------------------- 408 (1354)
T 3lxu_X 357 MNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAE---------------------------- 408 (1354)
T ss_dssp HHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC-----------------------------
T ss_pred HHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCcccc----------------------------
Confidence 87876 8999999999999986543 455 48999999996432210000
Q ss_pred ecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhH
Q 048043 367 YPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAG 446 (742)
Q Consensus 367 ~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g 446 (742)
|.
T Consensus 409 ys------------------------------------------------------------------------------ 410 (1354)
T 3lxu_X 409 YA------------------------------------------------------------------------------ 410 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceee
Q 048043 447 ESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMV 526 (742)
Q Consensus 447 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~ 526 (742)
......+.+++|||+||+. ++++||||+|||++|.++..... +.|..+
T Consensus 411 -----------------------~~~~~~g~~asFSS~GPt~--dg~~KpDIaAPG~~I~St~~~~~-------~~y~~~ 458 (1354)
T 3lxu_X 411 -----------------------MREKLPGNVYTWTSRDPCI--DGGQGVTVCAPGGAIASVPQFTM-------SKSQLM 458 (1354)
T ss_dssp ------------------------------CCCCCCCCSCCS--SSSCCEEEEEEC----------------------CC
T ss_pred -----------------------cccCCCCccccccCCCCCc--cCCCcceEEecCceEEEeecCCC-------CceecC
Confidence 0001124789999999998 68999999999999999865422 689999
Q ss_pred ccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCcCCCCcc
Q 048043 527 AGTSMSCPHLSGVAALLKS----AHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSANDPGLI 602 (742)
Q Consensus 527 sGTSmAaP~VAG~aALl~q----~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~lv 602 (742)
+|||||||||||++|||++ .+|+|++.+||++|++||+++.. .+++.||||+||+.+|++..+.
T Consensus 459 SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~------------~~~~~~G~GlLDa~~AV~~a~~ 526 (1354)
T 3lxu_X 459 NGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY------------VDPFAQGHGLLNVEKAFEHLTE 526 (1354)
T ss_dssp CCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTT------------SCTTTSSSSBCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCC------------CCcccccCCEeCHHHHHHHHHh
Confidence 9999999999999999986 89999999999999999998743 2456899999999999999999
Q ss_pred ccCCCCCcccccccCCCC-ccceeEEEeeeeeccCCCCCCcccCCCCceeeeeCCccEEEEEEEEeeC-------C-CCc
Q 048043 603 YDIQPDDYIPYLCGLNYS-DQHVQDIVMINVQCSKVSGIAETELNYPSFSVILGSTSQTYNRTVTNVG-------Q-AES 673 (742)
Q Consensus 603 ~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~tv~n~~-------~-~~~ 673 (742)
++..+.+++.|.|..+.. ...|..- . . .. ....+++++|+.+- . ...
T Consensus 527 ~~~~p~~~v~f~~~v~~~~~rgIylR--~-----------~-~~----------~~~~~~tv~V~p~f~~~~~~~~~~~i 582 (1354)
T 3lxu_X 527 HRQSKDNMLRFSVRVGNNADKGIHLR--Q-----------G-VQ----------RNSIDYNVYIEPIFYNDKEADPKDKF 582 (1354)
T ss_dssp TTTCGGGGEEEEEEETTTTBSSEEEC--S-----------S-CC----------CSCEEEEEEEEEEESSCSCSSSTTCS
T ss_pred cCCCCccceEEEEEecCCCCCceEEe--c-----------c-cc----------CCceEEEEEEeeeecCcccCChhhcc
Confidence 999999999999988753 3333221 0 0 00 11234444443322 1 122
Q ss_pred eEEEEEEC-CCCcEEEEEcCeeEecCCCcEEEEEEEEEEccCCCCceEEEEEEEEc-----CceEEEEeEEEEeC
Q 048043 674 SYTHKIVA-PEGVTVTVEPENISFTKKNQKAIYSITFTRSQKTSALFAQGYLSWVS-----TKHTVRSPIAVRFQ 742 (742)
Q Consensus 674 ~y~~~~~~-p~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~~-----~~~~v~~p~~v~~~ 742 (742)
.|.+.+.. +...-|. .|..|.+ .++.++|.|++++...+. +.++++|...| .+..+|+||.|..+
T Consensus 583 ~f~~~l~L~~t~~wv~-~p~~l~l--~~~~r~~~v~vDp~~L~~-G~h~~~v~~~D~~~~~~gp~f~ipvTv~~P 653 (1354)
T 3lxu_X 583 NFNVRLNLIASQPWVQ-CGAFLDL--SYGTRSIAVRVDPTGLQP-GVHSAVIRAYDTDCVQKGSLFEIPVTVVQP 653 (1354)
T ss_dssp CCCCEEEEEESSTTEE-ECSCEEC--TTSCEEEEEEECGGGCCS-EEEEEEEEEEESSCTTSCCSEEEEEEEEEC
T ss_pred ceEEEEEEecCCCcee-cccceee--cCCCceEEEEECCCCCCC-cceeEEEEEEEcCCcccCceEEeeEEEEee
Confidence 23222221 1112333 4888877 478899999999998766 89999998764 57999999999754
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-51 Score=434.21 Aligned_cols=268 Identities=29% Similarity=0.429 Sum_probs=221.2
Q ss_pred ccCccC--CCCCccCCCCCC--ccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCC--
Q 048043 123 FLGLHQ--NSGFWKDSNLGK--GVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGST-- 196 (742)
Q Consensus 123 ~~g~~~--~~~~~~~~~~G~--gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~-- 196 (742)
.|++.. ++.+|+.+ +|+ ||+|||||||||++||+|.++ +...++|..+..
T Consensus 9 ~W~l~~i~~~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~-----------------------~~~~~~~~~~~~~~ 64 (320)
T 2z30_A 9 PWGIERVKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN-----------------------IAWCVSTLRGKVST 64 (320)
T ss_dssp CHHHHHTTCGGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG-----------------------EEEEEECGGGCCBC
T ss_pred CCChhhcChHHHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc-----------------------cccCccccCCccCC
Confidence 355543 56799988 999 999999999999999999742 222233332210
Q ss_pred -CCCCCCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhC-------
Q 048043 197 -GEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDD------- 267 (742)
Q Consensus 197 -~~~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~------- 267 (742)
.....|..||||||||||+|... .. .+.||||+|+|+.+|+++..| ++.++++++|+||+++
T Consensus 65 ~~~~~~d~~gHGT~vAgiia~~~n--------~~-g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~~~~~ 135 (320)
T 2z30_A 65 KLRDCADQNGHGTHVIGTIAALNN--------DI-GVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADK 135 (320)
T ss_dssp CHHHHBCSSSHHHHHHHHHHCCSS--------SB-SCCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSCT
T ss_pred CCCCCCCCCCCHHHHHHHHHcccC--------CC-ceEeeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHhCccccccc
Confidence 01236789999999999998621 11 247999999999999998877 7788999999999987
Q ss_pred -------------CCcEEEEccCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcce
Q 048043 268 -------------GVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRS 334 (742)
Q Consensus 268 -------------g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~ 334 (742)
+++|||||||... ....+..++.++.++|+++|+||||+|.....+++..|++|+|||..
T Consensus 136 ~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~---- 208 (320)
T 2z30_A 136 DGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAID---- 208 (320)
T ss_dssp TSSSCCTTCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC----
T ss_pred ccccccccccccCCceEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEeeC----
Confidence 9999999999874 24567778888999999999999999988888889999999999842
Q ss_pred eEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCC
Q 048043 335 IVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGG 414 (742)
Q Consensus 335 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~ 414 (742)
T Consensus 209 -------------------------------------------------------------------------------- 208 (320)
T 2z30_A 209 -------------------------------------------------------------------------------- 208 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCc
Q 048043 415 IGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGIL 494 (742)
Q Consensus 415 ~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~ 494 (742)
..+.+++||++||
T Consensus 209 -----------------------------------------------------------~~~~~~~~S~~g~-------- 221 (320)
T 2z30_A 209 -----------------------------------------------------------SNDNIASFSNRQP-------- 221 (320)
T ss_dssp -----------------------------------------------------------TTSCBCTTSCSSC--------
T ss_pred -----------------------------------------------------------CCCCcCcccCCCC--------
Confidence 1236789999986
Q ss_pred ccceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhC-------------CCCCHHHHHHHHHc
Q 048043 495 KPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAH-------------PDWSPAAIKSAIMT 561 (742)
Q Consensus 495 KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-------------p~~s~~~ik~~L~~ 561 (742)
+|+|||.+|+++++. +.|..++|||||||||||++|||+|++ |++++.+||++|++
T Consensus 222 --~v~APG~~i~s~~~~---------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L~~ 290 (320)
T 2z30_A 222 --EVSAPGVDILSTYPD---------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHI 290 (320)
T ss_dssp --SEEEECSSEEEEETT---------TEEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHHHH
T ss_pred --CEEeCCCCeEEeccC---------CCeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHHHHHh
Confidence 789999999999987 789999999999999999999999999 99999999999999
Q ss_pred ccccccCCCCccccCCCCCCCCCcccccccCcCCcCCC
Q 048043 562 TADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSANDP 599 (742)
Q Consensus 562 TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~~ 599 (742)
||+++... ..+..||||+||+.+|++.
T Consensus 291 ta~~~~~~-----------g~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 291 TADDLGPT-----------GWDADYGYGVVRAALAVQA 317 (320)
T ss_dssp HSBCCSSS-----------SSBTTTBTCBCCHHHHHHH
T ss_pred hCccCCCC-----------CCCCCcCCceeCHHHHHHH
Confidence 99987432 3456799999999999863
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=437.69 Aligned_cols=274 Identities=19% Similarity=0.144 Sum_probs=220.6
Q ss_pred ccCccC--CCCCccCCCCCC--ccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCC--
Q 048043 123 FLGLHQ--NSGFWKDSNLGK--GVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGST-- 196 (742)
Q Consensus 123 ~~g~~~--~~~~~~~~~~G~--gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~-- 196 (742)
.|++.. +..+|+. ++|+ ||+||||||||| +||+|.++ +...++|..+.+
T Consensus 24 ~W~l~~i~~~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~-----------------------~~~~~~~~~~~~~~ 78 (347)
T 2iy9_A 24 PWYFDAIGLTETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS-----------------------EFAKFSFTQDGSPF 78 (347)
T ss_dssp CHHHHHHTCCHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC-----------------------EEEEEECBTTCCSS
T ss_pred CcchhhCChHHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC-----------------------cccCCcccCCCCCC
Confidence 344433 5678988 8999 999999999999 99999753 233344543321
Q ss_pred -CCCCCCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhhC------CC
Q 048043 197 -GEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDD------GV 269 (742)
Q Consensus 197 -~~~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~------g~ 269 (742)
.....|..||||||||||+|+. | +.||||+|+|+.+|++++.+.. ++++||+||+++ ++
T Consensus 79 ~~~~~~d~~gHGT~vAgiia~~~-------g-----~~GvAp~a~l~~~~v~~~~~~~--~~~~ai~~a~~~~~~~~~~~ 144 (347)
T 2iy9_A 79 PVKKSEALYIHGTAMASLIASRY-------G-----IYGVYPHALISSRRVIPDGVQD--SWIRAIESIMSNVFLAPGEE 144 (347)
T ss_dssp CCSSSHHHHHHHHHHHHHHHCSS-------S-----SCCSSTTCEEEEEECCSSBCTT--HHHHHHHHHHTCTTSCTTEE
T ss_pred CCCCCCCCCCcHHHHHHHHhccc-------C-----CcccCCCCEEEEEEEecCCCHH--HHHHHHHHHHhhhhcccCCc
Confidence 1245678899999999999861 1 3799999999999999775533 999999999999 99
Q ss_pred cEEEEccCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCC-------CCCCCCCCC----------ceEEecccCC-
Q 048043 270 DVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPN-------PSTSSNEAP----------WILSVGASTT- 331 (742)
Q Consensus 270 ~VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~-------~~~~~~~~p----------~vitVga~~~- 331 (742)
+|||||||..........+..++..+.++|+++|+||||+|.. ...+++..+ ++|+|||...
T Consensus 145 ~Vin~S~G~~~~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~Vga~~~~ 224 (347)
T 2iy9_A 145 KIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQY 224 (347)
T ss_dssp EEEEESSCBCCC-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEEEEEECCC
T ss_pred eEEEeccccCCCCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEEEEEcccC
Confidence 9999999986544455678888889999999999999999985 345677788 9999998532
Q ss_pred -cceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHh
Q 048043 332 -DRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVK 410 (742)
Q Consensus 332 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~ 410 (742)
+...
T Consensus 225 ~~g~~--------------------------------------------------------------------------- 229 (347)
T 2iy9_A 225 RKGET--------------------------------------------------------------------------- 229 (347)
T ss_dssp CTTSC---------------------------------------------------------------------------
T ss_pred CCCce---------------------------------------------------------------------------
Confidence 1000
Q ss_pred hcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCC
Q 048043 411 DAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIAS 490 (742)
Q Consensus 411 ~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~ 490 (742)
....+.+++||++||+
T Consensus 230 -------------------------------------------------------------~~~~~~~~~fS~~G~~--- 245 (347)
T 2iy9_A 230 -------------------------------------------------------------PVLHGGGITGSRFGNN--- 245 (347)
T ss_dssp -------------------------------------------------------------CCBCCCSSSCBCBCTT---
T ss_pred -------------------------------------------------------------ecccCCCCCCCCCCCC---
Confidence 0001245799999985
Q ss_pred CCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCC
Q 048043 491 PGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDG 570 (742)
Q Consensus 491 ~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g 570 (742)
||||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++.+||++|++||+++...+
T Consensus 246 ----~~di~APG~~i~s~~~~---------~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~ 312 (347)
T 2iy9_A 246 ----WVDIAAPGQNITFLRPD---------AKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLV 312 (347)
T ss_dssp ----TCSEEEECSSEEEECTT---------SCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEECGGGT
T ss_pred ----CCEEEeCCCCeEeecCC---------CCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCCCC
Confidence 67999999999999987 78999999999999999999999999999999999999999999875432
Q ss_pred CccccCCCCCCCCCcccccccCcCCcCCC
Q 048043 571 KPIVDQRLLPADMFAVGAGHVNPSSANDP 599 (742)
Q Consensus 571 ~~~~~~~~~~~~~~~~G~G~vd~~~Al~~ 599 (742)
+..+|+|+||+.+|++.
T Consensus 313 ------------~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 313 ------------DKVTEGRVLNAEKAISM 329 (347)
T ss_dssp ------------TTSGGGEECCHHHHHHH
T ss_pred ------------CccccCCEecHHHHHHH
Confidence 25899999999999984
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=431.43 Aligned_cols=270 Identities=24% Similarity=0.346 Sum_probs=218.1
Q ss_pred CCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchh
Q 048043 130 SGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTH 209 (742)
Q Consensus 130 ~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGTh 209 (742)
+++|+.+..++||+|||||||||++||+|.++. +....++..+. .....|..|||||
T Consensus 11 ~~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~~----------------------~~~~~~~~~~~-~~~~~d~~gHGTh 67 (306)
T 4h6w_A 11 KKLWSETRGDPKICVAVLDGIVDQNHPCFIGAD----------------------LTRLPSLVSGE-ANANGSMSTHGTH 67 (306)
T ss_dssp HHHHHHCSCCTTCEEEEESSCCCTTSGGGTTCE----------------------EEECC-----------CCCCHHHHH
T ss_pred HHHHhhhCCCCCCEEEEEcCCCCCCChhHcCCc----------------------ccCCCcccCCC-CCCCCCCCCchHH
Confidence 359999877799999999999999999998541 11112222221 1234577899999
Q ss_pred hhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC--CCHHHHHHHHHHhhhCCCcEEEEccCCCC-CCCCCC
Q 048043 210 TATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG--CSESRVYAAMDTAIDDGVDVLSLSLGAAS-VPFFED 286 (742)
Q Consensus 210 VAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~~VIn~SlG~~~-~~~~~~ 286 (742)
|||||+|+.. +.+.||||+|+|+.+|++.+.+ ....++++||+||++++++|||+|||... ......
T Consensus 68 VAGiiag~~~----------~~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~s~g~~~~~~~~~~ 137 (306)
T 4h6w_A 68 VASIIFGQHD----------SPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAGQLTDAGEADT 137 (306)
T ss_dssp HHHHHHCCTT----------SSSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSSCCCH
T ss_pred HHHHHHcccc----------CCcceeccccccceeeccccccccchHHHHHHHHHHhhcccceeeeccccccccCCCccH
Confidence 9999998731 1247999999999999987643 67788999999999999999999999753 234445
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEE
Q 048043 287 PLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLI 366 (742)
Q Consensus 287 ~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 366 (742)
.+..++..+.++|+++|+||||+|.....+++..+++|+||+..
T Consensus 138 ~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~------------------------------------ 181 (306)
T 4h6w_A 138 WLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMD------------------------------------ 181 (306)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEEC------------------------------------
T ss_pred HHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEec------------------------------------
Confidence 67788889999999999999999988888888899999999842
Q ss_pred ecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhH
Q 048043 367 YPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAG 446 (742)
Q Consensus 367 ~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g 446 (742)
T Consensus 182 -------------------------------------------------------------------------------- 181 (306)
T 4h6w_A 182 -------------------------------------------------------------------------------- 181 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceee
Q 048043 447 ESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMV 526 (742)
Q Consensus 447 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~ 526 (742)
..+.+++||++|+. ..||||+|||++|+++++. +.|..+
T Consensus 182 ---------------------------~~~~~~~~s~~g~~-----~~~~di~APG~~i~s~~~~---------~~~~~~ 220 (306)
T 4h6w_A 182 ---------------------------DQGKPVDFSNWGDA-----YQKQGILAPGKDILGAKPN---------GGTIRL 220 (306)
T ss_dssp ---------------------------TTSCBCSSSCBCHH-----HHHHEEEEECSSEEEECTT---------SCEEEE
T ss_pred ---------------------------CCCCccccccccCC-----cCcceeecCCcCcccccCC---------Cceecc
Confidence 12367789999975 4689999999999999987 789999
Q ss_pred ccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCcCC
Q 048043 527 AGTSMSCPHLSGVAALLKS----AHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSAND 598 (742)
Q Consensus 527 sGTSmAaP~VAG~aALl~q----~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 598 (742)
+|||||||||||++|||++ ++|.++|+|||++|++||+++...+ ......||+|+||+.+|++
T Consensus 221 sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~---------~~~~~~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 221 SGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD---------TDDQSRCLMGKLNILDAIE 287 (306)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT---------CSCGGGGTTCBCCHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC---------CCCCCCcceeecCHHHHHH
Confidence 9999999999999999986 4699999999999999999875433 2334579999999999987
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=409.49 Aligned_cols=235 Identities=29% Similarity=0.445 Sum_probs=203.9
Q ss_pred CCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchh
Q 048043 130 SGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTH 209 (742)
Q Consensus 130 ~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGTh 209 (742)
..+|..+++|+||+|||||||||++||+|.++ +...++|.+.. ..+.|..|||||
T Consensus 19 ~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~-----------------------~~~~~~~~~~~--~~~~d~~gHGT~ 73 (284)
T 1sh7_A 19 DRNYNANFDGFGVTAYVIDTGVNNNHEEFGGR-----------------------SVSGYDFVDND--ADSSDCNGHGTH 73 (284)
T ss_dssp CSBCCCSCCCTTCEEEEEESCCCTTCTTTTTC-----------------------EEEEEETTTTB--SCCCCSSSHHHH
T ss_pred hhhhhcCCCCCCCEEEEEcCCCCCCChhHcCC-----------------------ccccccccCCC--CCCCCCCCcHHH
Confidence 45899999999999999999999999999753 33345666542 356789999999
Q ss_pred hhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhC--CCcEEEEccCCCCCCCCCC
Q 048043 210 TATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDD--GVDVLSLSLGAASVPFFED 286 (742)
Q Consensus 210 VAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~--g~~VIn~SlG~~~~~~~~~ 286 (742)
|||||+|.. .||||+|+|+.+|++++.+ ++.+++++||+|++++ +++|||||||... ..
T Consensus 74 vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~~~~Vin~S~G~~~----~~ 135 (284)
T 1sh7_A 74 VAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGGQ----ST 135 (284)
T ss_dssp HHHHHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCCSSEEEEECCCBSC----CH
T ss_pred HHHHHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCCCCcEEEeCCCCCC----CH
Confidence 999999862 5999999999999998876 7888999999999984 7999999999872 45
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCCC-CCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeE
Q 048043 287 PLAIGSFSAIQKEIFVSCSAGNEGPNPS-TSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPL 365 (742)
Q Consensus 287 ~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 365 (742)
.+..++.++.++|+++|+||||+|.... .+++..+++|+||+..
T Consensus 136 ~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~----------------------------------- 180 (284)
T 1sh7_A 136 ALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTT----------------------------------- 180 (284)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEEC-----------------------------------
T ss_pred HHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEec-----------------------------------
Confidence 7778888899999999999999997653 4577889999999842
Q ss_pred EecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhh
Q 048043 366 IYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAA 445 (742)
Q Consensus 366 ~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~ 445 (742)
T Consensus 181 -------------------------------------------------------------------------------- 180 (284)
T 1sh7_A 181 -------------------------------------------------------------------------------- 180 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCccccee
Q 048043 446 GESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNM 525 (742)
Q Consensus 446 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~ 525 (742)
..+.+++||++||.. ||+|||++|+++++. +.|..
T Consensus 181 ----------------------------~~~~~~~~S~~G~~~--------di~ApG~~i~s~~~~---------~~~~~ 215 (284)
T 1sh7_A 181 ----------------------------SSDSRSSFSNWGSCV--------DLFAPGSQIKSAWYD---------GGYKT 215 (284)
T ss_dssp ----------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEECTT---------SSEEE
T ss_pred ----------------------------CCCCcCcccCCCCcc--------EEEeccCCeEEecCC---------CCEEE
Confidence 123678999999975 999999999999887 68999
Q ss_pred eccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccccc
Q 048043 526 VAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVS 567 (742)
Q Consensus 526 ~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~ 567 (742)
++|||||||||||++|||+|++|+++++|||++|++||++..
T Consensus 216 ~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 257 (284)
T 1sh7_A 216 ISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENK 257 (284)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred ccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC
Confidence 999999999999999999999999999999999999999764
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-49 Score=437.22 Aligned_cols=288 Identities=28% Similarity=0.367 Sum_probs=225.7
Q ss_pred CCCcc-CCCCCCccEEEEEcccCCC------CCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCC
Q 048043 130 SGFWK-DSNLGKGVIIGVMDTGITP------GHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLD 202 (742)
Q Consensus 130 ~~~~~-~~~~G~gV~VaVIDtGid~------~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d 202 (742)
+.+|+ .+++|+||+|||||||||+ .||+|.++ +...++|.+. ..+.|
T Consensus 11 ~~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~-----------------------i~~~~~~~~~---~~~~d 64 (434)
T 1wmd_A 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK-----------------------ITALYALGRT---NNAND 64 (434)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC-----------------------EEEEEETTTT---TCCCC
T ss_pred hhhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCC-----------------------EeeeccccCC---CCCCC
Confidence 34887 7999999999999999999 79999743 3344556543 35678
Q ss_pred CCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCC---CHHHHHHHHHHhhhCCCcEEEEccCCC
Q 048043 203 DEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGC---SESRVYAAMDTAIDDGVDVLSLSLGAA 279 (742)
Q Consensus 203 ~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~---~~~~i~~ai~~a~~~g~~VIn~SlG~~ 279 (742)
..||||||||||+|+.. .+.||||+|+|+.+|+++..|. ..+++.++|+|++++|++|||||||..
T Consensus 65 ~~gHGT~VAgiiag~g~-----------~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~ 133 (434)
T 1wmd_A 65 TNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAA 133 (434)
T ss_dssp SSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEECCCBC
T ss_pred CCCcHHHHHHHHHcCCC-----------CceeeCCCCEEEEEEeecCCCccccccHHHHHHHHHHHhcCCeEEEecCCCC
Confidence 99999999999998631 1479999999999999987663 456799999999999999999999987
Q ss_pred CCCCCCCHHHHHHHHh-hcCCcEEEEecCCCCCCC--CCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCC
Q 048043 280 SVPFFEDPLAIGSFSA-IQKEIFVSCSAGNEGPNP--STSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPK 356 (742)
Q Consensus 280 ~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~--~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 356 (742)
....+ +....++.++ .++|+++|+||||+|... ...++..+++|+|||++..+...
T Consensus 134 ~~~~~-~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~-------------------- 192 (434)
T 1wmd_A 134 VNGAY-TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF-------------------- 192 (434)
T ss_dssp CTTCC-CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG--------------------
T ss_pred cCCcC-CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCccc--------------------
Confidence 52222 3455555555 589999999999999764 45678899999999964321100
Q ss_pred CCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccc
Q 048043 357 DFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLL 436 (742)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~ 436 (742)
+.
T Consensus 193 ---------------------------------------------------------------------~~--------- 194 (434)
T 1wmd_A 193 ---------------------------------------------------------------------GS--------- 194 (434)
T ss_dssp ---------------------------------------------------------------------CG---------
T ss_pred ---------------------------------------------------------------------Cc---------
Confidence 00
Q ss_pred cEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccC-
Q 048043 437 PAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVEN- 515 (742)
Q Consensus 437 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~- 515 (742)
.....+.+++|||+||+. ++++||||+|||++|+++++.....
T Consensus 195 ----------------------------------~~~~~~~~a~fS~~G~~~--~g~~kpdi~ApG~~i~s~~~~~~~~~ 238 (434)
T 1wmd_A 195 ----------------------------------YADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDS 238 (434)
T ss_dssp ----------------------------------GGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTCCGG
T ss_pred ----------------------------------ccCCCCccccccCCCCCC--CCCCCceEEcCCCCeEecCCCCCCCc
Confidence 011235789999999998 7899999999999999998642100
Q ss_pred --CCCCcccceeeccccchhHHHHHHHHHHHhhCCCC-----CHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccc
Q 048043 516 --KTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDW-----SPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGA 588 (742)
Q Consensus 516 --~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~-----s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~ 588 (742)
.....+.|..++|||||||||||++|||+|++|++ ++++||++|++||+++.. ..++..|||
T Consensus 239 ~~~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~-----------~~~~~~~G~ 307 (434)
T 1wmd_A 239 SFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL-----------GYPNGNQGW 307 (434)
T ss_dssp GSSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS-----------CSSCTTTTT
T ss_pred ccccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCC-----------CCCCccCCc
Confidence 00013689999999999999999999999999875 899999999999987521 346778999
Q ss_pred cccCcCCcCCCC
Q 048043 589 GHVNPSSANDPG 600 (742)
Q Consensus 589 G~vd~~~Al~~~ 600 (742)
|+||+.+|++..
T Consensus 308 G~vd~~~a~~~~ 319 (434)
T 1wmd_A 308 GRVTLDKSLNVA 319 (434)
T ss_dssp CBCCHHHHHTCE
T ss_pred CeEeHHHhcccc
Confidence 999999999754
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-49 Score=428.29 Aligned_cols=291 Identities=27% Similarity=0.318 Sum_probs=219.2
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCcccccccc-----CccccCccccceeecCC-----CC-CC
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEF-----KGAACNNKLIGARNFLQ-----GS-TG 197 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~-----g~~f~n~ki~~~~~~~~-----~~-~~ 197 (742)
+..+|+.+++|+||+||||||||+ +||+|.++-.. .|+-.... +.+..........++.. .. ..
T Consensus 21 ~~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (340)
T 3lpc_A 21 ADKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLP----GYDFISNSQISLDGDGRDADPFDEGDWFDNWACGGRPDPR 95 (340)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBCC----CEECCCCHHHHCSSSSSBSCCBCCCCCBCTTTTSCTTCGG
T ss_pred HHHHHHhcCCCCCeEEEEEcCCCC-CChhhhccccc----CccccCCccccccCCCccCCccccccccccccccCCCCcc
Confidence 456999999999999999999998 99999854211 11100000 00000000000000000 00 01
Q ss_pred CCCCCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhh----------C
Q 048043 198 EPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAID----------D 267 (742)
Q Consensus 198 ~~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~----------~ 267 (742)
....|..||||||||||+|...+. . .+.||||+|+|+.+|++...+...++++++|+|+++ +
T Consensus 96 ~~~~d~~gHGT~vAgiia~~~~~~-------~-g~~GvAp~a~l~~~~v~~~~~~~~~~~~~ai~~a~~~~~~~~~~~~~ 167 (340)
T 3lpc_A 96 KERSDSSWHGSHVAGTIAAVTNNR-------I-GVAGVAYGAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIPENRN 167 (340)
T ss_dssp GSCBCCCCHHHHHHHHHHCCCSSS-------S-SCCCTTTTSEEEEEECCBTTBCCHHHHHHHHHHHHTCCCTTSCCCSS
T ss_pred cCCCCCCCCHHHHHHHHHccCCCC-------C-cceeecCCCEEEEEEEecCCCCcHHHHHHHHHHHhcccccccccccC
Confidence 235678999999999999974321 1 247999999999999998877888999999999998 8
Q ss_pred CCcEEEEccCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCC-CCCCCCCceEEecccCCcceeEEEEEeCCCee
Q 048043 268 GVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPS-TSSNEAPWILSVGASTTDRSIVASVELGNQAV 346 (742)
Q Consensus 268 g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~ 346 (742)
+++|||||||... .....+..++.++.++|++||+||||+|.... .+++..+++|+||+.+
T Consensus 168 ~~~Vin~S~G~~~--~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~---------------- 229 (340)
T 3lpc_A 168 PAKVINMSLGSDG--QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATT---------------- 229 (340)
T ss_dssp CCSEEEECCCEES--CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEEC----------------
T ss_pred CCeEEEeCcCCCC--CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCC----------------
Confidence 9999999999753 23456777778889999999999999997754 4577889999999842
Q ss_pred EeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCC
Q 048043 347 YDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNG 426 (742)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~ 426 (742)
T Consensus 230 -------------------------------------------------------------------------------- 229 (340)
T 3lpc_A 230 -------------------------------------------------------------------------------- 229 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEE
Q 048043 427 YSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNIL 506 (742)
Q Consensus 427 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~ 506 (742)
..+.++.||++||. |||+|||.+|+
T Consensus 230 -----------------------------------------------~~~~~~~~S~~g~~--------~di~ApG~~i~ 254 (340)
T 3lpc_A 230 -----------------------------------------------SRGIRASFSNYGVD--------VDLAAPGQDIL 254 (340)
T ss_dssp -----------------------------------------------TTSSBCTTCCBSTT--------CCEEEECSSEE
T ss_pred -----------------------------------------------CCCCcCCCCCCCCC--------ceEEecCCCee
Confidence 12367899999974 59999999999
Q ss_pred eccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhh-C---CCCCHHHHHHHHHcccccccCCCCccccCCCCCCC
Q 048043 507 AAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSA-H---PDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPAD 582 (742)
Q Consensus 507 sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-~---p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 582 (742)
++++.... ......|..++|||||||||||++|||+|+ + |.+++++||++|++||+++.. .+
T Consensus 255 s~~~~~~~--~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~~------------~~ 320 (340)
T 3lpc_A 255 STVDSGTR--RPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG------------RL 320 (340)
T ss_dssp EEEESCSS--SCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCSS------------CC
T ss_pred cccCCCCc--CCCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCCC------------CC
Confidence 99876331 112246999999999999999999999998 5 999999999999999998742 24
Q ss_pred CCcccccccCcCCcCCC
Q 048043 583 MFAVGAGHVNPSSANDP 599 (742)
Q Consensus 583 ~~~~G~G~vd~~~Al~~ 599 (742)
+..||+|+||+.+||+.
T Consensus 321 ~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 321 DRALGSGIVDAEAAVNS 337 (340)
T ss_dssp SSCCCSSBCCHHHHHHH
T ss_pred CCCcccceecHHHHHHH
Confidence 56899999999999874
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-48 Score=404.62 Aligned_cols=237 Identities=31% Similarity=0.449 Sum_probs=202.8
Q ss_pred CCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchh
Q 048043 130 SGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTH 209 (742)
Q Consensus 130 ~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGTh 209 (742)
..+|..+++|+||+|||||||||++||+|.++ +...++|.++. .++.|..|||||
T Consensus 21 ~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~-----------------------~~~~~d~~~~~--~~~~d~~gHGT~ 75 (278)
T 2b6n_A 21 DNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR-----------------------ASSGYDFIDND--YDATDCNGHGTH 75 (278)
T ss_dssp CSEEECSCCCTTCEEEEEESCCCTTCGGGTTC-----------------------EEEEEETTTTB--SCCCCSSSHHHH
T ss_pred chhcccCCCCCCCEEEEEeCCCCCCChhHhcc-----------------------cccCeecCCCC--CCCCCCCCcHHH
Confidence 45799999999999999999999999999753 23345665542 356789999999
Q ss_pred hhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhh--CCCcEEEEccCCCCCCCCCC
Q 048043 210 TATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAID--DGVDVLSLSLGAASVPFFED 286 (742)
Q Consensus 210 VAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~--~g~~VIn~SlG~~~~~~~~~ 286 (742)
|||||+|.. .||||+|+|+.+|++++.+ ++.++++++|+|+++ .+++|||||||... ..
T Consensus 76 vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~g~~Vin~S~G~~~----~~ 137 (278)
T 2b6n_A 76 VAGTIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGA----SQ 137 (278)
T ss_dssp HHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC----CH
T ss_pred HHHHHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCCCCeEEEECCCCCc----CH
Confidence 999999862 5999999999999998876 788899999999997 59999999999864 35
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCCC-CCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeE
Q 048043 287 PLAIGSFSAIQKEIFVSCSAGNEGPNPS-TSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPL 365 (742)
Q Consensus 287 ~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 365 (742)
.+..++.++.++|+++|+||||+|.... .++...+++|+||+..
T Consensus 138 ~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~----------------------------------- 182 (278)
T 2b6n_A 138 ATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTT----------------------------------- 182 (278)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC-----------------------------------
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeC-----------------------------------
Confidence 6777888899999999999999997654 3477889999999842
Q ss_pred EecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhh
Q 048043 366 IYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAA 445 (742)
Q Consensus 366 ~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~ 445 (742)
T Consensus 183 -------------------------------------------------------------------------------- 182 (278)
T 2b6n_A 183 -------------------------------------------------------------------------------- 182 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCccccee
Q 048043 446 GESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNM 525 (742)
Q Consensus 446 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~ 525 (742)
..+.+++||++||.. ||+|||++|+++++... +.|..
T Consensus 183 ----------------------------~~~~~~~~S~~G~~~--------di~ApG~~i~s~~~~~~-------~~~~~ 219 (278)
T 2b6n_A 183 ----------------------------SNDSRSSFSNYGTCL--------DIYAPGSSITSSWYTSN-------SATNT 219 (278)
T ss_dssp ----------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEECTTST-------TCEEE
T ss_pred ----------------------------CCCCcCCcCCCCCCC--------eEEeCCCCeECcccCCC-------CCEEE
Confidence 123678999999865 99999999999987532 68899
Q ss_pred eccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccccc
Q 048043 526 VAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVS 567 (742)
Q Consensus 526 ~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~ 567 (742)
++|||||||||||++|||+|++|++++.+||++|++||++..
T Consensus 220 ~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 261 (278)
T 2b6n_A 220 ISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATADK 261 (278)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred eCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC
Confidence 999999999999999999999999999999999999998753
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-48 Score=402.57 Aligned_cols=237 Identities=33% Similarity=0.450 Sum_probs=204.4
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCch
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGT 208 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGT 208 (742)
...+|..+++|+||+|||||||||++||+|.++ +...++|.. ....|..||||
T Consensus 20 ~~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~-----------------------~~~~~~~~~----~~~~d~~gHGT 72 (276)
T 4dzt_A 20 LSNSYTYTATGRGVNVYVIDTGIRTTHREFGGR-----------------------ARVGYDALG----GNGQDCNGHGT 72 (276)
T ss_dssp CCSCEECSCCCTTCEEEEEESCCCTTCGGGTTC-----------------------EEEEEETTS----SCSCCSSSHHH
T ss_pred cccceecCCCCCCcEEEEEccCCCCCChhHccC-----------------------eeccccCCC----CCCCCCCCCHH
Confidence 356899999999999999999999999999753 233345544 34668899999
Q ss_pred hhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhC--CCcEEEEccCCCCCCCCC
Q 048043 209 HTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDD--GVDVLSLSLGAASVPFFE 285 (742)
Q Consensus 209 hVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~--g~~VIn~SlG~~~~~~~~ 285 (742)
||||||+|.. .||||+|+|+.+|++++.+ .+.++++++++|++++ +++|||||||... .
T Consensus 73 ~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~vin~S~g~~~----~ 134 (276)
T 4dzt_A 73 HVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGGV----S 134 (276)
T ss_dssp HHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC----C
T ss_pred HHHHHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCCCeEEEECCCCCC----C
Confidence 9999999872 6999999999999998877 7888999999999987 8999999999753 4
Q ss_pred CHHHHHHHHhhcCCcEEEEecCCCCCCCCCC-CCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCcee
Q 048043 286 DPLAIGSFSAIQKEIFVSCSAGNEGPNPSTS-SNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFP 364 (742)
Q Consensus 286 ~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~-~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 364 (742)
..+..++.++.++|+++|+||||+|...... ++..+++|+||+..
T Consensus 135 ~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~---------------------------------- 180 (276)
T 4dzt_A 135 TALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATT---------------------------------- 180 (276)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC----------------------------------
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEEC----------------------------------
Confidence 5778888899999999999999999775443 77889999999842
Q ss_pred EEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehh
Q 048043 365 LIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYA 444 (742)
Q Consensus 365 ~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~ 444 (742)
T Consensus 181 -------------------------------------------------------------------------------- 180 (276)
T 4dzt_A 181 -------------------------------------------------------------------------------- 180 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccce
Q 048043 445 AGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFN 524 (742)
Q Consensus 445 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~ 524 (742)
..+.+++||++||.. ||+|||++|.++++... ..|.
T Consensus 181 -----------------------------~~~~~~~~S~~g~~~--------dv~ApG~~i~s~~~~~~-------~~~~ 216 (276)
T 4dzt_A 181 -----------------------------SSDARASFSNYGSCV--------DLFAPGASIPSAWYTSD-------TATQ 216 (276)
T ss_dssp -----------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEECTTSS-------SCEE
T ss_pred -----------------------------CCCCcCCcCCCCCCc--------eEEeCCCCeEccccCCC-------CceE
Confidence 123678999999976 99999999999987632 5899
Q ss_pred eeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccC
Q 048043 525 MVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSL 568 (742)
Q Consensus 525 ~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~ 568 (742)
.++|||||||+|||++|||+|++|++++++||++|++||++...
T Consensus 217 ~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 260 (276)
T 4dzt_A 217 TLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGRL 260 (276)
T ss_dssp EECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred EeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCcc
Confidence 99999999999999999999999999999999999999998743
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-48 Score=402.99 Aligned_cols=239 Identities=32% Similarity=0.462 Sum_probs=203.7
Q ss_pred CccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhh
Q 048043 132 FWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTA 211 (742)
Q Consensus 132 ~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVA 211 (742)
.|. ..+|+||+|+|||||||++||+|.++ +...++|.+ .+.|..|||||||
T Consensus 24 ~~~-~~~G~gv~VaViDsGvd~~H~~l~~~-----------------------~~~~~~~~~-----~~~d~~gHGT~vA 74 (279)
T 2pwa_A 24 YYD-ESAGQGSCVYVIDTGIEASHPEFEGR-----------------------AQMVKTYYY-----SSRDGNGHGTHCA 74 (279)
T ss_dssp ECC-TTTTTTEEEEEEESCCCTTCGGGTTC-----------------------EEEEEESSS-----CSSCSSSHHHHHH
T ss_pred ccc-CCCCCCCEEEEEeCCCCCCChhHhCc-----------------------cccccCCCC-----CCCCCCCCHHHHH
Confidence 344 37899999999999999999999753 233455552 3567899999999
Q ss_pred hhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCC-------cEEEEccCCCCCCC
Q 048043 212 TTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGV-------DVLSLSLGAASVPF 283 (742)
Q Consensus 212 GiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~-------~VIn~SlG~~~~~~ 283 (742)
|||+|+. .||||+|+|+.+|++++.+ ++.++++++|+|++++++ +|||||||..
T Consensus 75 giia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vin~S~G~~---- 136 (279)
T 2pwa_A 75 GTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG---- 136 (279)
T ss_dssp HHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE----
T ss_pred HHHHhcc--------------cccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccEEEecCCCC----
Confidence 9999862 6999999999999998877 788999999999999887 9999999975
Q ss_pred CCCHHHHHHHHhhcCCcEEEEecCCCCCCCC-CCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCc
Q 048043 284 FEDPLAIGSFSAIQKEIFVSCSAGNEGPNPS-TSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQ 362 (742)
Q Consensus 284 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 362 (742)
....+..++.++.++|+++|+||||+|.+.. .+++..+++|+||+..
T Consensus 137 ~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~-------------------------------- 184 (279)
T 2pwa_A 137 YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASD-------------------------------- 184 (279)
T ss_dssp CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEEC--------------------------------
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEec--------------------------------
Confidence 2457788888899999999999999998653 3577889999999842
Q ss_pred eeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEe
Q 048043 363 FPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVS 442 (742)
Q Consensus 363 ~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~ 442 (742)
T Consensus 185 -------------------------------------------------------------------------------- 184 (279)
T 2pwa_A 185 -------------------------------------------------------------------------------- 184 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCccc
Q 048043 443 YAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKST 522 (742)
Q Consensus 443 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~ 522 (742)
..+.+++||++||.+ ||+|||++|+++++. +.
T Consensus 185 -------------------------------~~~~~~~~S~~G~~~--------di~APG~~i~s~~~~---------~~ 216 (279)
T 2pwa_A 185 -------------------------------RYDRRSSFSNYGSVL--------DIFGPGTDILSTWIG---------GS 216 (279)
T ss_dssp -------------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEEETT---------TE
T ss_pred -------------------------------CCCCcCCcCCCCCcc--------eEEEecCCeEEeecC---------CC
Confidence 123678999999965 999999999999987 68
Q ss_pred ceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCc
Q 048043 523 FNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNP 593 (742)
Q Consensus 523 y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~ 593 (742)
|..++|||||||||||++|||+|+ |++++.+||++|++||++... ..+|+|..|+
T Consensus 217 ~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~~---------------~~~~~g~~n~ 271 (279)
T 2pwa_A 217 TRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDL---------------SNIPFGTVNL 271 (279)
T ss_dssp EEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESCC---------------BSCCTTSCCE
T ss_pred EEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccccc---------------CCCCCCCccE
Confidence 999999999999999999999999 999999999999999997632 2367787776
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=422.83 Aligned_cols=289 Identities=17% Similarity=0.184 Sum_probs=216.2
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCC----CCCCCC
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGE----PPLDDE 204 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~----~~~d~~ 204 (742)
+..+|..+++|+||+|||||||||++||+|.++-. ....++|.+...+. .+.|..
T Consensus 27 ~~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~---------------------~~~~~d~~~~~~~p~~~~~~~d~~ 85 (471)
T 1p8j_A 27 VKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD---------------------PGASFDVNDQDPDPQPRYTQMNDN 85 (471)
T ss_dssp CHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC---------------------GGGCEETTTTBSCCCCCCCTTCTT
T ss_pred hHHHHhcCCCCCCCEEEEEeCCcCCCChhHhhccC---------------------ccCcccccCCCCCCCCccCCCCCC
Confidence 45699999999999999999999999999985310 01124444432111 346889
Q ss_pred CCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhh-CCCcEEEEccCCCCCC-
Q 048043 205 GHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAID-DGVDVLSLSLGAASVP- 282 (742)
Q Consensus 205 gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~~VIn~SlG~~~~~- 282 (742)
+|||||||||||...++ . .+.||||+|+|+.+|+++ +..+++++|++|+++ ++++|||||||.....
T Consensus 86 gHGT~vAGiiaa~~~n~-------~-g~~GvAp~a~i~~~rv~~---g~~~~~~~ai~~a~~~~~~~Vin~S~G~~~~~~ 154 (471)
T 1p8j_A 86 RHGTRCAGEVAAVANNG-------V-CGVGVAYNARIGGVRMLD---GEVTDAVEARSLGLNPNHIHIYSASWGPEDDGK 154 (471)
T ss_dssp CHHHHHHHHHHCCSSSS-------S-SCCCTTTTSEEEEEECSS---SCCCHHHHHHHHTSCTTTCCEEEECCBSCCSSS
T ss_pred CcHHHHHHHHHeeccCC-------C-CCEEECCCCeEEEEEccC---CchhHHHHHHHhhhccCCCeEEEeccCcCCCCC
Confidence 99999999999874221 1 237999999999999986 346789999999999 8999999999986421
Q ss_pred ---CCCCHHHHHHHHhhc-----CCcEEEEecCCCCCCCCC----CCCCCCceEEecccCCcceeEEEEEeCCCeeEeee
Q 048043 283 ---FFEDPLAIGSFSAIQ-----KEIFVSCSAGNEGPNPST----SSNEAPWILSVGASTTDRSIVASVELGNQAVYDGE 350 (742)
Q Consensus 283 ---~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~ 350 (742)
.....+..++.++.+ +|+++|+||||+|..... ....++++|+|||.+
T Consensus 155 ~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~-------------------- 214 (471)
T 1p8j_A 155 TVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT-------------------- 214 (471)
T ss_dssp CCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEEC--------------------
T ss_pred cccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEeccc--------------------
Confidence 112334455555543 699999999999976321 123458899999842
Q ss_pred eccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcccc
Q 048043 351 ALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTL 430 (742)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~ 430 (742)
T Consensus 215 -------------------------------------------------------------------------------- 214 (471)
T 1p8j_A 215 -------------------------------------------------------------------------------- 214 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccC
Q 048043 431 ADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWP 510 (742)
Q Consensus 431 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~ 510 (742)
..+.+++||++||.. ....+|...+||..|+++.+
T Consensus 215 -------------------------------------------~~g~~a~~S~~g~~~--~~~~~~~~~~~g~~i~st~~ 249 (471)
T 1p8j_A 215 -------------------------------------------QFGNVPWYSEACSST--LATTYSSGNQNEKQIVTTDL 249 (471)
T ss_dssp -------------------------------------------TTSCCCTTCCBCTTC--CEEEECCCSTTSCCEEEEET
T ss_pred -------------------------------------------CCCCcccccCCCCcc--eEEeCCCCCCCCCCEEEeeC
Confidence 123678999999987 33455666666789999876
Q ss_pred CCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccc
Q 048043 511 FSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGH 590 (742)
Q Consensus 511 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~ 590 (742)
.. +.|..++|||||||||||++|||+|++|+|++++||++|++||++.+...............+..||||+
T Consensus 250 ~~--------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n~~g~~~~~~~G~G~ 321 (471)
T 1p8j_A 250 RQ--------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSYGYGL 321 (471)
T ss_dssp TT--------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECTTSCEEBTTTBTCB
T ss_pred CC--------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceecCCCcccCCCCCCEE
Confidence 42 5689999999999999999999999999999999999999999988654322222211123456899999
Q ss_pred cCcCCcCCCCcc
Q 048043 591 VNPSSANDPGLI 602 (742)
Q Consensus 591 vd~~~Al~~~lv 602 (742)
||+.+|++...-
T Consensus 322 vda~~Av~~a~~ 333 (471)
T 1p8j_A 322 LDAGAMVALAQN 333 (471)
T ss_dssp CCHHHHHHHHHT
T ss_pred EcHhHHHHHhhc
Confidence 999999985443
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-46 Score=415.80 Aligned_cols=269 Identities=20% Similarity=0.271 Sum_probs=202.3
Q ss_pred CccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCC-CC---CCCCCCCCCCc
Q 048043 132 FWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQG-ST---GEPPLDDEGHG 207 (742)
Q Consensus 132 ~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~-~~---~~~~~d~~gHG 207 (742)
.|..+++|+||+|+|||||||++||+|.++- ....+++..+ +. .....|..|||
T Consensus 18 aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~----------------------~~~~~~~v~~~dg~~f~~~~~D~~GHG 75 (546)
T 2qtw_B 18 EYQPPDGGSLVEVYLLDTSIQSDHREIEGRV----------------------MVTDFENVPEEDGTRFHRQASKCDSHG 75 (546)
T ss_dssp ------CCTTSEEEEEESCCCTTSTTTTTTE----------------------EEEEEECCCCCC-------CTTTTHHH
T ss_pred hcccCCCCCCcEEEEECCCCCCCChHHcccc----------------------cccCcccccCCCCccccCCCCCCCChH
Confidence 7888999999999999999999999998641 0001111111 00 02456889999
Q ss_pred hhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhC------CCcEEEEccCCCC
Q 048043 208 THTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDD------GVDVLSLSLGAAS 280 (742)
Q Consensus 208 ThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~------g~~VIn~SlG~~~ 280 (742)
|||||||+|+. .||||+|+|+.+|+++.+| ++.+++++||+|++++ +++|||||||+.
T Consensus 76 ThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~~~~g~~VINmSlGg~- 140 (546)
T 2qtw_B 76 THLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG- 140 (546)
T ss_dssp HHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHHSCCSCEEEEECEEEE-
T ss_pred HHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhhccCCCeEEEecCCCC-
Confidence 99999999873 5999999999999998877 7788999999999974 899999999975
Q ss_pred CCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCC-CCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCC
Q 048043 281 VPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPS-TSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFP 359 (742)
Q Consensus 281 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 359 (742)
+...+..++.++.++|++||+||||+|.+.. .+++..+++|+|||++.+.
T Consensus 141 ---~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g-------------------------- 191 (546)
T 2qtw_B 141 ---YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQD-------------------------- 191 (546)
T ss_dssp ---CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTS--------------------------
T ss_pred ---CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCC--------------------------
Confidence 2457788888999999999999999997653 3478889999999953211
Q ss_pred CCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEE
Q 048043 360 SKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAV 439 (742)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~ 439 (742)
T Consensus 192 -------------------------------------------------------------------------------- 191 (546)
T 2qtw_B 192 -------------------------------------------------------------------------------- 191 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccc----cccCCCCCCCCCCCcccceEecCCcEEeccCCCccC
Q 048043 440 HVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELA----SFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVEN 515 (742)
Q Consensus 440 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a----~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~ 515 (742)
.++ .||+||+. |||+|||++|+++++...
T Consensus 192 -------------------------------------~~a~~s~~fSn~G~~--------vDI~APG~~I~St~~~~~-- 224 (546)
T 2qtw_B 192 -------------------------------------QPVTLGTLGTNFGRC--------VDLFAPGEDIIGASSDCS-- 224 (546)
T ss_dssp -------------------------------------CBCEETTEECCBSTT--------CCEEEECSSEEEECTTST--
T ss_pred -------------------------------------CcccccCCcCCCCCc--------ceEEecCccEEeeccCCC--
Confidence 112 28999974 499999999999988632
Q ss_pred CCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccc------cCC---CCCCCCCcc
Q 048043 516 KTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIV------DQR---LLPADMFAV 586 (742)
Q Consensus 516 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~------~~~---~~~~~~~~~ 586 (742)
..|..++|||||||||||++|||+|++|+|+++|||++|++||.+.......+. ... ..+.....+
T Consensus 225 -----~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~i~~~~~p~~~~~~tpN~l~~~~~~~~~~ 299 (546)
T 2qtw_B 225 -----TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGA 299 (546)
T ss_dssp -----TCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESCSCGGGSCHHHHTTSCCEECCCCCTTCC-
T ss_pred -----CcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccccCCccCccccCCCCccchhccCCccccc
Confidence 579999999999999999999999999999999999999999986532221000 000 112245567
Q ss_pred cccc--cCcCCcCC
Q 048043 587 GAGH--VNPSSAND 598 (742)
Q Consensus 587 G~G~--vd~~~Al~ 598 (742)
|+|+ .++..+..
T Consensus 300 G~~l~~~~~w~a~s 313 (546)
T 2qtw_B 300 GWQLFCRTVWSAHS 313 (546)
T ss_dssp -CCCEEEEEECCCC
T ss_pred CCCcchhchhccCC
Confidence 8888 77777765
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=421.09 Aligned_cols=283 Identities=19% Similarity=0.210 Sum_probs=215.8
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCC-CCCCCCCCCc
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTG-EPPLDDEGHG 207 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~-~~~~d~~gHG 207 (742)
+..+|..+++|+||+|||||||||++||+|.++- ...+.++|.++.+. .+..|..|||
T Consensus 43 ~~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~---------------------~~~~~~d~~~~~~~~~p~~d~~gHG 101 (503)
T 2id4_A 43 VLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNF---------------------CAEGSWDFNDNTNLPKPRLSDDYHG 101 (503)
T ss_dssp CHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB---------------------CGGGCEETTTTBSCCCCCSTTTTHH
T ss_pred hHHHHhcCCCCCCeEEEEEeCCCCCCChhHhhcc---------------------cccCcccCCCCCCCCCCCCCCCChH
Confidence 4568999999999999999999999999998641 01123455544321 2235789999
Q ss_pred hhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhhCCCcEEEEccCCCCCC----C
Q 048043 208 THTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVP----F 283 (742)
Q Consensus 208 ThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~----~ 283 (742)
|||||||||...++ .+ +.||||+|+|+.+|+++.. .+..++++||+|+++++ +|||||||..... .
T Consensus 102 T~vAGiiaa~~~n~-------~~-~~GvAp~a~i~~~rv~~~~-~~~~~~~~ai~~a~~~~-~Iin~S~G~~~~~~~~~~ 171 (503)
T 2id4_A 102 TRCAGEIAAKKGNN-------FC-GVGVGYNAKISGIRILSGD-ITTEDEAASLIYGLDVN-DIYSCSWGPADDGRHLQG 171 (503)
T ss_dssp HHHHHHHHCCSSSS-------SS-CCCTTTTSEEEEEECTTSC-CCHHHHHHHTTTTTTTC-SEEEECEESCCSSSCCBC
T ss_pred HHHHHHHHhccCCC-------CC-cEEECCCCEEEEEEeeCCC-CChHHHHHHHHhHhhcC-CEEEeCCCcCCCCccccC
Confidence 99999999874221 12 3799999999999999754 67788999999999998 9999999986421 1
Q ss_pred CCCHHHHHHHHhh-----cCCcEEEEecCCCCCCCC--CCC--CCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccC
Q 048043 284 FEDPLAIGSFSAI-----QKEIFVSCSAGNEGPNPS--TSS--NEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQ 354 (742)
Q Consensus 284 ~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~--~~~--~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~ 354 (742)
....+..++.++. .+|+++|+||||+|.... .++ ..++++|+|||.+
T Consensus 172 ~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~------------------------ 227 (503)
T 2id4_A 172 PSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID------------------------ 227 (503)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC------------------------
T ss_pred chHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeC------------------------
Confidence 2234566666665 479999999999997532 222 3567899999842
Q ss_pred CCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCc
Q 048043 355 PKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPH 434 (742)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~ 434 (742)
T Consensus 228 -------------------------------------------------------------------------------- 227 (503)
T 2id4_A 228 -------------------------------------------------------------------------------- 227 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEe----cCCcEEeccC
Q 048043 435 LLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIG----PGVNILAAWP 510 (742)
Q Consensus 435 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~A----PG~~I~sa~~ 510 (742)
..+.+++||++||.. |++| ||..|+++..
T Consensus 228 ---------------------------------------~~~~~a~~S~~g~~~--------~~~a~~~gpG~~I~st~~ 260 (503)
T 2id4_A 228 ---------------------------------------HKDLHPPYSEGCSAV--------MAVTYSSGSGEYIHSSDI 260 (503)
T ss_dssp ---------------------------------------TTSCCCTTCCCCTTE--------EEEEECSBTTBCEEEECS
T ss_pred ---------------------------------------CCCCcCCcCCCCCcc--------eEeecCCCCCCceEeecC
Confidence 123678999999987 8887 8999999944
Q ss_pred CCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCC-CCccccCCCCCCCCCccccc
Q 048043 511 FSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLD-GKPIVDQRLLPADMFAVGAG 589 (742)
Q Consensus 511 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~-g~~~~~~~~~~~~~~~~G~G 589 (742)
.. +.|..++|||||||||||++|||+|++|+|++++||++|++||+++... .............+..||||
T Consensus 261 ~~--------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~~~~~g~~~~~~~G~G 332 (503)
T 2id4_A 261 NG--------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFG 332 (503)
T ss_dssp TT--------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSEEBTTTBTC
T ss_pred CC--------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCceecCCCCccCcccCCc
Confidence 31 6899999999999999999999999999999999999999999987643 11111111112335679999
Q ss_pred ccCcCCcCCCCc
Q 048043 590 HVNPSSANDPGL 601 (742)
Q Consensus 590 ~vd~~~Al~~~l 601 (742)
+||+.+|++...
T Consensus 333 ~vda~~Av~~a~ 344 (503)
T 2id4_A 333 KIDAHKLIEMSK 344 (503)
T ss_dssp BCCHHHHHHHHT
T ss_pred EecHHHHHHHHh
Confidence 999999998543
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-46 Score=388.49 Aligned_cols=228 Identities=31% Similarity=0.454 Sum_probs=196.8
Q ss_pred CccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhh
Q 048043 132 FWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTA 211 (742)
Q Consensus 132 ~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVA 211 (742)
.|... +|+||+|||||||||++||+|.++ +...++|..+ ..|..|||||||
T Consensus 25 ~~~~~-~G~gv~VaViDtGvd~~h~~l~~~-----------------------~~~~~~~~~~-----~~d~~gHGT~vA 75 (279)
T 3f7m_A 25 AYDTS-AGAGACVYVIDTGVEDTHPDFEGR-----------------------AKQIKSYAST-----ARDGHGHGTHCA 75 (279)
T ss_dssp EECTT-TTTTEEEEEEESCCCTTCGGGTTC-----------------------EEEEEECSSS-----SSCSSSHHHHHH
T ss_pred eecCC-CCCCCEEEEEcCCCCCCChhhccc-----------------------cccccCCCCC-----CCCCCCcHHHHH
Confidence 56655 999999999999999999999753 3334555543 238899999999
Q ss_pred hhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCC-------CcEEEEccCCCCCCC
Q 048043 212 TTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDG-------VDVLSLSLGAASVPF 283 (742)
Q Consensus 212 GiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g-------~~VIn~SlG~~~~~~ 283 (742)
|||+|+. .||||+|+|+.+|+++..+ ++.++++++++|+++++ ++|||||||..
T Consensus 76 gii~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vin~S~g~~---- 137 (279)
T 3f7m_A 76 GTIGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGG---- 137 (279)
T ss_dssp HHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE----
T ss_pred HHHhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeEEEeCCCcC----
Confidence 9999862 6999999999999998876 78899999999999876 89999999975
Q ss_pred CCCHHHHHHHHhhcCCcEEEEecCCCCCCCCC-CCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCc
Q 048043 284 FEDPLAIGSFSAIQKEIFVSCSAGNEGPNPST-SSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQ 362 (742)
Q Consensus 284 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 362 (742)
....+..++.++.++|+++|+||||+|..... .++..+++|+||+..
T Consensus 138 ~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~-------------------------------- 185 (279)
T 3f7m_A 138 YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATD-------------------------------- 185 (279)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC--------------------------------
T ss_pred ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecC--------------------------------
Confidence 44678888889999999999999999987543 377889999999842
Q ss_pred eeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEe
Q 048043 363 FPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVS 442 (742)
Q Consensus 363 ~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~ 442 (742)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 3f7m_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCccc
Q 048043 443 YAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKST 522 (742)
Q Consensus 443 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~ 522 (742)
..+.+++||++||.. ||+|||++|+++++. +.
T Consensus 186 -------------------------------~~~~~~~~S~~g~~~--------di~ApG~~i~s~~~~---------~~ 217 (279)
T 3f7m_A 186 -------------------------------SNDVRSTFSNYGRVV--------DIFAPGTSITSTWIG---------GR 217 (279)
T ss_dssp -------------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEECGG---------GC
T ss_pred -------------------------------CCCCCCCCCCCCCCC--------eEEECCCCeEeecCC---------CC
Confidence 123678999999965 999999999999987 78
Q ss_pred ceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccccc
Q 048043 523 FNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVS 567 (742)
Q Consensus 523 y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~ 567 (742)
|..++|||||||+|||++|||+|++|+ ++++||++|++||++..
T Consensus 218 ~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~ 261 (279)
T 3f7m_A 218 TNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNV 261 (279)
T ss_dssp EEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESC
T ss_pred EEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhccccc
Confidence 999999999999999999999999999 99999999999998764
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=417.02 Aligned_cols=312 Identities=22% Similarity=0.214 Sum_probs=200.9
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCC-CCCCCCCCCc
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTG-EPPLDDEGHG 207 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~-~~~~d~~gHG 207 (742)
+..+|.++++|+||+|||||||||++||||.++- ..+.++|..+.++ .+..|.++||
T Consensus 59 v~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n~----------------------~~~~~~~~~~~~dp~p~~~~~gHG 116 (600)
T 3hjr_A 59 LWWAHRTGVLGQGVNVAVVDDGLAIAHPDLADNV----------------------RPGSKNVVTGSDDPTPTDPDTAHG 116 (600)
T ss_dssp CHHHHHHTCSCTTCEEEEESSCCCTTCTTTGGGB----------------------CSCCBCTTTSSSCCCCCSTTCCHH
T ss_pred HHHHHHcCCCCCCeEEEEEcCCCCCCChhHhhcc----------------------ccCcceeecCCCCCCCCCCCCChH
Confidence 3458999999999999999999999999998531 1122344443322 2334678999
Q ss_pred hhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHH-HHhhhCCCcEEEEccCCCC-CCCC
Q 048043 208 THTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAM-DTAIDDGVDVLSLSLGAAS-VPFF 284 (742)
Q Consensus 208 ThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai-~~a~~~g~~VIn~SlG~~~-~~~~ 284 (742)
|||||||||.. +..+ +.||||+|+|+.+|++++.+ ...++++.++ +++..++++|||+|||... .+..
T Consensus 117 ThVAGiIAa~~--------n~~g-~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~S~G~~~~~~~~ 187 (600)
T 3hjr_A 117 TSVSGIIAAVD--------NAIG-TKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYGMSVVDPRS 187 (600)
T ss_dssp HHHHHHHHCCS--------SSSS-CCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEECCCCCCSSCCC
T ss_pred HHHHHHHhEeC--------CCCC-cEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEecccCccccCCcc
Confidence 99999999862 2222 37999999999999998776 6677777766 6677889999999999753 2222
Q ss_pred CCHHH-----HHHHH--hhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCC
Q 048043 285 EDPLA-----IGSFS--AIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKD 357 (742)
Q Consensus 285 ~~~~~-----~a~~~--a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 357 (742)
.+... .++.. ...+|+++|+||||.+....... +.+.+ .+++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~------~~~~~------------~g~~------------- 236 (600)
T 3hjr_A 188 ANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGG------YVLNR------------TGNG------------- 236 (600)
T ss_dssp SCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETT------EEEEE------------ESSC-------------
T ss_pred CCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccc------ccccc------------CCCC-------------
Confidence 22221 11111 23689999999999764311000 00000 0000
Q ss_pred CCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCcccc
Q 048043 358 FPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLP 437 (742)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p 437 (742)
.......|.-... .....
T Consensus 237 --------------~~~~~~~~~~d~~-~~~~~----------------------------------------------- 254 (600)
T 3hjr_A 237 --------------PKLPFENSNLDPS-NSNFW----------------------------------------------- 254 (600)
T ss_dssp --------------CCCCSSBTTSSGG-GGSSS-----------------------------------------------
T ss_pred --------------CCCCcccccccCc-cccCc-----------------------------------------------
Confidence 0000000100000 00000
Q ss_pred EEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcE--------Eecc
Q 048043 438 AVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNI--------LAAW 509 (742)
Q Consensus 438 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I--------~sa~ 509 (742)
.|+ +......+.++.||++|+.. +++|||..+ .+..
T Consensus 255 ------------------------~Is----VgA~~~~g~~a~yS~~G~~v--------~~~apg~~~~~~~~~~vt~~~ 298 (600)
T 3hjr_A 255 ------------------------NLV----VSALNADGVRSSYSSVGSNI--------FLSATGGEYGTDTPAMVTTDL 298 (600)
T ss_dssp ------------------------EEE----EEEECTTSSBCTTCCBCTTC--------CEEEECCSCSSSSCCEEEECC
T ss_pred ------------------------ceE----EeeecCCCCEeecccCCcce--------eeccCCCCCCCCCcceeeecC
Confidence 000 00123456889999999987 899998763 2222
Q ss_pred CCCc-----------------cCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCc
Q 048043 510 PFSV-----------------ENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKP 572 (742)
Q Consensus 510 ~~~~-----------------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~ 572 (742)
++.. .........|..++|||||||||||++|||+|+||+|+++|||++|++||++++....|
T Consensus 299 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~lt~~~v~~~L~~TA~~~d~~~~p 378 (600)
T 3hjr_A 299 PGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQP 378 (600)
T ss_dssp SSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCSTTCCC
T ss_pred CCccccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCc
Confidence 2211 01112235688999999999999999999999999999999999999999999877655
Q ss_pred ccc--------------------CCCCCCCCCcccccccCcCCcCCCC
Q 048043 573 IVD--------------------QRLLPADMFAVGAGHVNPSSANDPG 600 (742)
Q Consensus 573 ~~~--------------------~~~~~~~~~~~G~G~vd~~~Al~~~ 600 (742)
... +.........||||+||+.+|++.+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yGfG~vDA~~aV~~A 426 (600)
T 3hjr_A 379 VMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALELA 426 (600)
T ss_dssp EEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHHHHHHHH
T ss_pred ccccccccccccccccccCCcccccCCceEccccCCceecHHHHHHHh
Confidence 221 1111122457999999999998743
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-25 Score=252.63 Aligned_cols=96 Identities=21% Similarity=0.329 Sum_probs=77.3
Q ss_pred eeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhh---CCCcEEEEccCCCCCCC---CCCHHHHHHHHhhcCCcEEEEe
Q 048043 232 AVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAID---DGVDVLSLSLGAASVPF---FEDPLAIGSFSAIQKEIFVSCS 305 (742)
Q Consensus 232 ~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~---~g~~VIn~SlG~~~~~~---~~~~~~~a~~~a~~~Gi~vV~A 305 (742)
+.||||+|+|+.|++. ...++++++|+||++ ++++|||||||...... +...+..++.+|..+|++||+|
T Consensus 274 ~~gvAp~a~i~~~~~~----~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi~vv~A 349 (552)
T 1t1e_A 274 AGALAPGAKIAVYFAP----NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAA 349 (552)
T ss_dssp HHHHCTTSEEEEEECC----SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhccCCCCeEEEEEcC----CCCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 4799999999999974 245789999999998 79999999999864221 1235666677888999999999
Q ss_pred cCCCCCCC--------CCCCCCCCceEEecccCC
Q 048043 306 AGNEGPNP--------STSSNEAPWILSVGASTT 331 (742)
Q Consensus 306 AGN~g~~~--------~~~~~~~p~vitVga~~~ 331 (742)
|||+|... ..+++.+|+|++||+++.
T Consensus 350 sGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 350 AGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp CCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred cCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 99999653 345688999999999753
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-22 Score=214.77 Aligned_cols=99 Identities=17% Similarity=0.188 Sum_probs=80.1
Q ss_pred eeecCcceEEEEEEeccCCCCHHHHHHHHHHhhh-CCCcEEEEccCCCCC----CCCCCHHHHHHHHhhcCCcEEEEecC
Q 048043 233 VGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAID-DGVDVLSLSLGAASV----PFFEDPLAIGSFSAIQKEIFVSCSAG 307 (742)
Q Consensus 233 ~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~~VIn~SlG~~~~----~~~~~~~~~a~~~a~~~Gi~vV~AAG 307 (742)
..+||+++++.|++.+..+++.++++++|+||++ ++++|||||||.... ..+.+.+..++.+|..+|++||+|||
T Consensus 90 g~~aP~a~~~~~~~~~~~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~AsG 169 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSG 169 (372)
T ss_dssp HHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hhcCCCCcEEEEEeCCCCCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 3578999999999987655677899999999998 899999999998631 12234567777788899999999999
Q ss_pred CCCCCCC-------------CCCCCCCceEEecccCC
Q 048043 308 NEGPNPS-------------TSSNEAPWILSVGASTT 331 (742)
Q Consensus 308 N~g~~~~-------------~~~~~~p~vitVga~~~ 331 (742)
|+|...+ .+++..|+|++||+++.
T Consensus 170 d~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~ 206 (372)
T 1ga6_A 170 DEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 206 (372)
T ss_dssp SBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred CCCCccccccCccCCccCCcCCCCCCCCeEEEEeeec
Confidence 9997642 45678999999999754
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-10 Score=131.07 Aligned_cols=97 Identities=11% Similarity=0.122 Sum_probs=62.4
Q ss_pred eecCcceEEEEEEeccCCCCHHHHHHHHHHhh--hCCCcEEEEccCCCCCC---CCCCHHHHHHHHhhcCCcEEEEecCC
Q 048043 234 GIAPLAHLAIYKVCDFDGCSESRVYAAMDTAI--DDGVDVLSLSLGAASVP---FFEDPLAIGSFSAIQKEIFVSCSAGN 308 (742)
Q Consensus 234 GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~--~~g~~VIn~SlG~~~~~---~~~~~~~~a~~~a~~~Gi~vV~AAGN 308 (742)
+++++..++.|-.... ....+.++..+++.. .+-++||++|||..... .+...+...+.++..+|+.|++|+||
T Consensus 263 a~~~~i~~~~~~~~g~-~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~ASGD 341 (544)
T 3edy_A 263 SAGANISTWVYSSPGR-HEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGD 341 (544)
T ss_dssp HHSTTSEEEEECCCSC-CTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEECCS
T ss_pred ccCCCceEEEEecCCc-ccccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 4555555555433211 112234455444433 34688999999987422 22234555666788899999999999
Q ss_pred CCCCC----------CCCCCCCCceEEecccCC
Q 048043 309 EGPNP----------STSSNEAPWILSVGASTT 331 (742)
Q Consensus 309 ~g~~~----------~~~~~~~p~vitVga~~~ 331 (742)
+|... ..+++..|||++||+++.
T Consensus 342 ~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 342 SGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp STTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred CCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 99642 245688999999999753
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.97 E-value=4.2e-10 Score=99.76 Aligned_cols=81 Identities=9% Similarity=0.100 Sum_probs=68.1
Q ss_pred CCCCCceEEEEECCCCCCCCcchhccchHHHHHhhcccccccCCCCCCceEEEEcceeeEEEEEcCHHHHHHhhcCCCeE
Q 048043 26 DTDSLETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCYKNVITGFAAKLTAEQAKAMETKEGFI 105 (742)
Q Consensus 26 ~~~~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~i~~L~~~p~V~ 105 (742)
....+++|||+|++.. .+.. ...|.+|+.+++++. ..+.++.+.|.+.|+||+++++++++++|+++|+|.
T Consensus 33 ~~~ip~~YIV~lk~~~---~~~~-~~~h~~~l~s~~~~~-----~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~ 103 (114)
T 2w2n_P 33 PWRLPGTYVVVLKEET---HLSQ-SERTARRLQAQAARR-----GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVD 103 (114)
T ss_dssp GGEEEEEEEEEECTTC---CHHH-HHHHHHHHHHHHHHT-----TCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEE
T ss_pred ccCCCCcEEEEECCCC---CHHH-HHHHHHHHHHHhhhc-----ccCCceEEEecccceEEEEEcCHHHHHHHHcCCCcc
Confidence 3446899999999877 4444 557888988887652 456799999999999999999999999999999999
Q ss_pred EEEeceeecc
Q 048043 106 SAHVEKTLQL 115 (742)
Q Consensus 106 ~V~~~~~~~~ 115 (742)
+|++++.++.
T Consensus 104 ~VE~D~~v~~ 113 (114)
T 2w2n_P 104 YIEEDSSVFA 113 (114)
T ss_dssp EEEEEEEEEE
T ss_pred EEEeCceEec
Confidence 9999998764
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.84 E-value=7.6e-09 Score=85.75 Aligned_cols=74 Identities=11% Similarity=0.220 Sum_probs=57.3
Q ss_pred CCCceEEEEECCCCCCCCcchhccchHHHHHhhcccccccCCCCCCceEEEEcceeeEEEEEcCHHHHHHhhcCCCeEEE
Q 048043 28 DSLETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCYKNVITGFAAKLTAEQAKAMETKEGFISA 107 (742)
Q Consensus 28 ~~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~i~~L~~~p~V~~V 107 (742)
..+++|||+|+++. .... . .+++++ ..+.++.++|.+ |+||+++++++++++|+++|+|.+|
T Consensus 6 ~i~~~YIV~~k~~~---~~~~----~---~~~~~~-------~~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~V 67 (80)
T 3cnq_P 6 NGEKKYIVGFKQGF---KSCA----K---KEDVIS-------EKGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYV 67 (80)
T ss_dssp --CCEEEEEECTTC---CSHH----H---HHHHHH-------TTTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEE
T ss_pred cCCCCEEEEECCCC---ChHH----H---HHHHHH-------HcCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEE
Confidence 45899999999977 3221 1 112222 235689999998 9999999999999999999999999
Q ss_pred EeceeeccccCC
Q 048043 108 HVEKTLQLHTTH 119 (742)
Q Consensus 108 ~~~~~~~~~~~~ 119 (742)
|++..++++++.
T Consensus 68 e~D~~v~~~tt~ 79 (80)
T 3cnq_P 68 EEDKLYRALSAT 79 (80)
T ss_dssp EECCEEEECCC-
T ss_pred EeCcEEEEeeec
Confidence 999999887654
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-08 Score=91.38 Aligned_cols=80 Identities=9% Similarity=0.104 Sum_probs=62.2
Q ss_pred CCCCceEEEEECCCCCCCCcchhccchHHHHHhhcccccccCCCCCCceEEEEcceeeEEEEEcCHHHHHHhhcCCCeEE
Q 048043 27 TDSLETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCYKNVITGFAAKLTAEQAKAMETKEGFIS 106 (742)
Q Consensus 27 ~~~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~i~~L~~~p~V~~ 106 (742)
...+++|||+||++. .+.. ...+.+++.+.+++. ..+.++.++|++.|+||+++++++++++|+++|+|.+
T Consensus 44 ~~Ip~~YIV~~K~~~---~~~~-~~~~~~~l~~~~~~r-----~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~ 114 (124)
T 2qtw_A 44 WRLPGTYVVVLKEET---HLSQ-SERTARRLQAQAARR-----GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDY 114 (124)
T ss_dssp GEEEEEEEEEECTTC---CHHH-HHHHHHHHHHHHHHT-----TCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEE
T ss_pred cCCCCCEEEEECCCC---CHHH-HHHHHHHHHHHHhhc-----ccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcE
Confidence 446899999999987 4333 334444544433321 2467899999999999999999999999999999999
Q ss_pred EEeceeecc
Q 048043 107 AHVEKTLQL 115 (742)
Q Consensus 107 V~~~~~~~~ 115 (742)
|+++..++.
T Consensus 115 VE~D~~v~a 123 (124)
T 2qtw_A 115 IEEDSSVFA 123 (124)
T ss_dssp EEEEEEEEE
T ss_pred EEeCceEec
Confidence 999998754
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2.5e-07 Score=75.56 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=54.1
Q ss_pred CceEEEEECCCCCCCCcchhccchHHHHHhhcccccccCCCCCCceEEEE-cceeeEEEEEcCHHHHHHhhcC--CCeEE
Q 048043 30 LETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCY-KNVITGFAAKLTAEQAKAMETK--EGFIS 106 (742)
Q Consensus 30 ~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y-~~~~~g~s~~~~~~~i~~L~~~--p~V~~ 106 (742)
.+.|||.|+++. .... ...+.+++.. . +.++.+.| ...|+||+++++++.+++|+++ |.|.+
T Consensus 2 ~~sYIV~lk~~~---~~~~-~~~~~~~~~~----~-------gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~ 66 (76)
T 1v5i_B 2 AGKFIVIFKNDV---SEDK-IRETKDEVIA----E-------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDS 66 (76)
T ss_dssp CEEEEEEECTTC---CHHH-HHHHHHHHHH----H-------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEE
T ss_pred CceEEEEECCCC---CHHH-HHHHHHHHHh----h-------CCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcE
Confidence 378999999977 3222 2233333332 1 34788999 4799999999999999999999 88999
Q ss_pred EEeceeecc
Q 048043 107 AHVEKTLQL 115 (742)
Q Consensus 107 V~~~~~~~~ 115 (742)
||++..++.
T Consensus 67 VE~D~~v~~ 75 (76)
T 1v5i_B 67 IEEDHVAHA 75 (76)
T ss_dssp EEECCEEEC
T ss_pred EcCCcEEeC
Confidence 999988753
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=7.7e-07 Score=85.56 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=72.6
Q ss_pred CCCCcCCCCCC-CC-------ccceEEEeecCC-cchhhhhHHHhhcCCeEEEEeccCCCCccc----cCCCccccEEEE
Q 048043 375 SSAQCSPGSLS-SN-------IRGKLVLCERGG-GERTKKGQVVKDAGGIGMILMNDKLNGYST----LADPHLLPAVHV 441 (742)
Q Consensus 375 ~~~~c~~~~~~-~~-------~~g~iv~~~~g~-~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~----~~~~~~~p~~~i 441 (742)
....|.+.... .. .+++|+|++||. |.|.+|..+++++||.++|+||+...+... ......||+++|
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~I 161 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMI 161 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEEE
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEEE
Confidence 45789887654 22 478999999999 999999999999999999999985332211 112346999999
Q ss_pred ehhhHHHHHHHHhcCCCCeEEEEec
Q 048043 442 SYAAGESIKAYINSTSSPNATIVFK 466 (742)
Q Consensus 442 ~~~~g~~l~~~~~~~~~~~~~i~~~ 466 (742)
+..+|+.|++++.++...+++|.+.
T Consensus 162 s~~~G~~L~~~L~~G~~Vtvti~vg 186 (194)
T 3icu_A 162 GNLKGTKILQSIQRGIQVTMVIEVG 186 (194)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCeEEEEEECC
Confidence 9999999999999887766666553
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00023 Score=55.84 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=40.2
Q ss_pred CCCCceEEEEcceeeEEEEEcCHHHHHHhhcCCCeEEEEeceeec
Q 048043 70 NNQPRMLYCYKNVITGFAAKLTAEQAKAMETKEGFISAHVEKTLQ 114 (742)
Q Consensus 70 ~~~~~~~~~y~~~~~g~s~~~~~~~i~~L~~~p~V~~V~~~~~~~ 114 (742)
..+.++.++|. .+++++++++++.++.|+++|+|++|+++...+
T Consensus 20 ~~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 20 GIGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp GGTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred HCCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 45789999998 699999999999999999999999999998764
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.01 Score=52.79 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=57.1
Q ss_pred CccEEEEEEEEeeCCCCceEEEEEECCCCcEEEEEcCeeEecCCCcEEEEEEEEEEccCCCCceEEEEEEEE-cCceEEE
Q 048043 656 STSQTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRSQKTSALFAQGYLSWV-STKHTVR 734 (742)
Q Consensus 656 ~~~~~~~~tv~n~~~~~~~y~~~~~~p~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~-~~~~~v~ 734 (742)
+...+.++.|+|.|+.+..|+..... ..+++|+..++.+ |+++.++|+|.+... ..+.+.+.+. +++..+.
T Consensus 40 ~~~~~~~~~l~N~g~~~~~f~~~~~~----~F~i~P~~g~L~p-g~~~~i~V~F~P~~~---g~~~~~l~v~~~~g~~~~ 111 (122)
T 2ys4_A 40 KYSTQKILLVRNIGNKNAVFHIKTCR----PFSIEPAIGTLNV-GESMQLEVEFEPQSV---GDHSGRLIVCYDTGEKVF 111 (122)
T ss_dssp SSCEEEEEEEECCSSSCEEEEEECCT----TEEEESSEEEECT-TCEEEEEEEECCSSS---BCCCCBCEEEESSSCEEC
T ss_pred CCeEEEEEEEEECCCCCEEEEEecCC----CeEEECCcCEECC-CCEEEEEEEEEcCCC---ccEEEEEEEEECCCCEEE
Confidence 45788889999999988888776532 3678999999998 999999999998865 4567777665 5555555
Q ss_pred Ee
Q 048043 735 SP 736 (742)
Q Consensus 735 ~p 736 (742)
++
T Consensus 112 v~ 113 (122)
T 2ys4_A 112 VS 113 (122)
T ss_dssp CE
T ss_pred EE
Confidence 44
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.043 Score=59.83 Aligned_cols=69 Identities=22% Similarity=0.386 Sum_probs=57.4
Q ss_pred CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccc-c--CCCccccEEEEehhhHHHHHHHHh
Q 048043 386 SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYST-L--ADPHLLPAVHVSYAAGESIKAYIN 454 (742)
Q Consensus 386 ~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~-~--~~~~~~p~~~i~~~~g~~l~~~~~ 454 (742)
.+++|||+++.++.|.+.+|..+++.+||.|+|++++....... . .....+|...++..+++.|+.++.
T Consensus 111 ~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 111 KDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp SCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred CCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 47999999999999999999999999999999999986322111 1 134578999999999999999984
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.14 Score=56.16 Aligned_cols=82 Identities=11% Similarity=0.207 Sum_probs=60.3
Q ss_pred CCccceEEEeecCCcc---------hhhh----hHHHhhcCCeEEEEeccCCCCc-------cccC-CCccccEEEEehh
Q 048043 386 SNIRGKLVLCERGGGE---------RTKK----GQVVKDAGGIGMILMNDKLNGY-------STLA-DPHLLPAVHVSYA 444 (742)
Q Consensus 386 ~~~~g~iv~~~~g~~~---------~~~~----~~~~~~~g~~~~i~~~~~~~~~-------~~~~-~~~~~p~~~i~~~ 444 (742)
.+++|||||+.++.|. +..| ..++.++||+++|++++..... .... ....+|++.|+.+
T Consensus 125 ~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~~ 204 (444)
T 3iib_A 125 GSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISNP 204 (444)
T ss_dssp TTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECHH
T ss_pred cccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecHH
Confidence 6899999999998884 3334 3568899999999998744321 1111 2357999999999
Q ss_pred hHHHHHHHHhcCCCCeEEEEece
Q 048043 445 AGESIKAYINSTSSPNATIVFKG 467 (742)
Q Consensus 445 ~g~~l~~~~~~~~~~~~~i~~~~ 467 (742)
+++.|...+..+...++++....
T Consensus 205 da~~L~~~l~~g~~~~v~l~~~~ 227 (444)
T 3iib_A 205 DADLINAMLKRDKEVVISLELGS 227 (444)
T ss_dssp HHHHHHHHHTTTCCCEEEEEEEE
T ss_pred HHHHHHHHHhCCCCeEEEEEEee
Confidence 99999999987765556555433
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=94.19 E-value=0.085 Score=60.30 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=54.7
Q ss_pred CccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcc-------------ccC---------------------C
Q 048043 387 NIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYS-------------TLA---------------------D 432 (742)
Q Consensus 387 ~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~-------------~~~---------------------~ 432 (742)
+++|||+|+.+|.|.+.+|..++..+||+|+|++++...... ... .
T Consensus 129 dv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~~~~ 208 (640)
T 3kas_A 129 PVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSSG 208 (640)
T ss_dssp CCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCSSCC
T ss_pred ccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCcccccccccccccccC
Confidence 799999999999999999999999999999999987532100 000 0
Q ss_pred CccccEEEEehhhHHHHHHHHh
Q 048043 433 PHLLPAVHVSYAAGESIKAYIN 454 (742)
Q Consensus 433 ~~~~p~~~i~~~~g~~l~~~~~ 454 (742)
...+|+..|+..+++.|+..+.
T Consensus 209 ~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 209 LPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCCEEecCHHHHHHHHHHcc
Confidence 2358999999999999988764
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=92.90 E-value=0.11 Score=59.92 Aligned_cols=70 Identities=27% Similarity=0.364 Sum_probs=55.6
Q ss_pred CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCC----C------------------cc----ccCC-------
Q 048043 386 SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLN----G------------------YS----TLAD------- 432 (742)
Q Consensus 386 ~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~----~------------------~~----~~~~------- 432 (742)
.+++|||+|+++|.|.+.+|..+++.+||+|+|++++..+ + .. ...+
T Consensus 151 ~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG~p 230 (707)
T 3fed_A 151 INCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTPGYP 230 (707)
T ss_dssp CCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCTTSC
T ss_pred CCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCCCCc
Confidence 3689999999999999999999999999999999986320 0 00 0011
Q ss_pred ---------------CccccEEEEehhhHHHHHHHHhc
Q 048043 433 ---------------PHLLPAVHVSYAAGESIKAYINS 455 (742)
Q Consensus 433 ---------------~~~~p~~~i~~~~g~~l~~~~~~ 455 (742)
...||+..|+..+++.|+..+..
T Consensus 231 s~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 231 AKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp CCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred ccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 24689999999999999988753
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.76 E-value=2 Score=38.67 Aligned_cols=84 Identities=14% Similarity=0.031 Sum_probs=61.7
Q ss_pred ccEEEEEEEEeeCCCCceEEEEEECC----CCcEEEEEcCeeEecCCCcEEEEEEEEEEccC-----CC-CceEEEEEEE
Q 048043 657 TSQTYNRTVTNVGQAESSYTHKIVAP----EGVTVTVEPENISFTKKNQKAIYSITFTRSQK-----TS-ALFAQGYLSW 726 (742)
Q Consensus 657 ~~~~~~~tv~n~~~~~~~y~~~~~~p----~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~-----~~-~~~~~G~i~~ 726 (742)
..++-+++|+|.|.-+.+|+...... ..--.+++|..-++.| |++.+++|++..... .. ..-+.--+++
T Consensus 43 ~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~P-ge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL 121 (140)
T 3qbt_B 43 QLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEP-NETVDISLDVYVSKDSVTILNSGEDKIEDILVL 121 (140)
T ss_dssp CCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECT-TCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEE
T ss_pred eeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCC-CCeeEEEEEEEEccCcccccccchhhhheeEEE
Confidence 36777899999999999999874321 1123667899999999 999999999986431 11 1344566777
Q ss_pred E-cCceEEEEeEEEEe
Q 048043 727 V-STKHTVRSPIAVRF 741 (742)
Q Consensus 727 ~-~~~~~v~~p~~v~~ 741 (742)
. .++....+|+.-.|
T Consensus 122 ~Ve~G~d~fI~v~g~~ 137 (140)
T 3qbt_B 122 HLDRGKDYFLTISGNY 137 (140)
T ss_dssp EETTSCEEEEEEEEEE
T ss_pred EeecCCcEEEEEeccc
Confidence 6 78888899987654
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.13 E-value=0.21 Score=60.88 Aligned_cols=24 Identities=25% Similarity=0.565 Sum_probs=22.9
Q ss_pred CCCCCccEEEEEcccCCCCCCCCC
Q 048043 136 SNLGKGVIIGVMDTGITPGHPSFS 159 (742)
Q Consensus 136 ~~~G~gV~VaVIDtGid~~Hp~f~ 159 (742)
.+.|+||+|||+|||||+.+|.|+
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSS
T ss_pred CCCCCccEEEEEeCCCCCCCCcce
Confidence 589999999999999999999997
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=87.44 E-value=2.2 Score=37.09 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=46.0
Q ss_pred cEEEEEEEEeeCCCCceEEEEEECCCCcEEEEEcCeeEecCCCcEEEEEEEEEEccC
Q 048043 658 SQTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRSQK 714 (742)
Q Consensus 658 ~~~~~~tv~n~~~~~~~y~~~~~~p~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~ 714 (742)
...+++.+.|..+.+.+|.+++...+++++. .+..+++.+ |+.+++.|.+..+..
T Consensus 32 ~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v~~-g~~~~~~v~v~~~~~ 86 (118)
T 2r39_A 32 ENTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQVEP-GEVLNLPMSLGADPD 86 (118)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEECT-TCEEEEEEEEEECGG
T ss_pred EEEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEECC-CCEEEEEEEEEEChH
Confidence 6788999999999999999999987776543 355688888 999999999988743
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.43 E-value=2.4 Score=36.26 Aligned_cols=68 Identities=10% Similarity=0.088 Sum_probs=50.9
Q ss_pred CccEEEEEEEEeeCCCCceEEEEEEC-CCCcEEEEEcCeeEecCCCcEEEEEEEEEEccCCCCceEEEEEEEE
Q 048043 656 STSQTYNRTVTNVGQAESSYTHKIVA-PEGVTVTVEPENISFTKKNQKAIYSITFTRSQKTSALFAQGYLSWV 727 (742)
Q Consensus 656 ~~~~~~~~tv~n~~~~~~~y~~~~~~-p~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~ 727 (742)
+...+.+++++|.|+.+..|+..... +.+...+++|..-.+.+ |++++++|+|.+... ..+.=.|.+.
T Consensus 25 g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~p-g~~~~i~V~f~~~~~---g~f~~~i~v~ 93 (112)
T 2e6j_A 25 GSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEP-SGVQAIQISFSSIIL---GNFEEEFLVN 93 (112)
T ss_dssp SCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECT-TBCCEEEEEECCCCC---EEEEEEECEE
T ss_pred CCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECC-CCEEEEEEEEECCCc---ceEEEEEEEE
Confidence 44688889999999999999883211 11234678999999999 999999999998654 3444556665
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=86.44 E-value=0.45 Score=52.02 Aligned_cols=31 Identities=32% Similarity=0.486 Sum_probs=26.8
Q ss_pred cCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCC
Q 048043 473 KSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPF 511 (742)
Q Consensus 473 ~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 511 (742)
...+.++.||++||.. ||+|||++|+++++.
T Consensus 181 ~~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~ 211 (441)
T 1y9z_A 181 DSNLDHAAFSQYTDQV--------EISGPGEAILSTVTV 211 (441)
T ss_dssp CTTCCBCTTSCCCTTE--------EEEEECSSEEEECST
T ss_pred CCCCCCCccccCCCce--------EEEeccCCeeccccC
Confidence 4456899999999865 999999999999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 742 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 5e-47 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 8e-13 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 2e-10 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 1e-12 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 5e-05 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 3e-12 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 8e-10 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 5e-12 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 1e-11 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 7e-12 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 4e-06 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 1e-11 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 3e-09 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 4e-11 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 4e-04 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 3e-10 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 3e-07 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 7e-09 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 6e-06 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 6e-08 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 3e-04 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 1e-07 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 2e-06 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 1e-05 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 171 bits (432), Expect = 5e-47
Identities = 82/484 (16%), Positives = 148/484 (30%), Gaps = 83/484 (17%)
Query: 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGA 188
+ DS I ++D+G H N +
Sbjct: 12 GATVLSDSQ-AGNRTICIIDSGYDRSHNDL-----------------------NANNVTG 47
Query: 189 RNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCD 248
N P ++ HGTH A T A N VG+ P + I+ V
Sbjct: 48 TNNSGTGNWYQPGNNNAHGTHVAGTIAAIANNEG---------VVGVMPNQNANIHIVKV 98
Query: 249 FDGCSESRVYAAMDTAID----DGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSC 304
F+ + + G +V+++SLG + + +
Sbjct: 99 FNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLG---GSGSTTTERNALNTHYNNGVLLIA 155
Query: 305 SAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFP 364
+AGN G + + ++SV A ++ A + +Q G +
Sbjct: 156 AAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGR 215
Query: 365 LIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKL 424
L G + +V R T +A G +
Sbjct: 216 LADITIGGQSYFS------------NGVVPHNRLTPSGTSYAPAPINASATGALAECTVN 263
Query: 425 NGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSR 484
+ + A + + + S I + + +S
Sbjct: 264 GTSFSCGN----------MANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSA 313
Query: 485 GPSIASPGIL--KPDIIGPGVNILAAWPFSVENK--------TNTKSTFNMVAGTSMSCP 534
P + +P ++ DI P V++ A +++ K + GTSM+ P
Sbjct: 314 LPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATP 373
Query: 535 HLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPS 594
H+SGVA L+ S HP+ S + +++A+ TAD +S+ G+ G G +N
Sbjct: 374 HVSGVATLVWSYHPECSASQVRAALNATADDLSVAGRD-----------NQTGYGMINAV 422
Query: 595 SAND 598
+A
Sbjct: 423 AAKA 426
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 69.3 bits (168), Expect = 8e-13
Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 20/124 (16%)
Query: 482 SSRGPSIASPGILKPDIIGPGVNILAAWP---------FSVENKTNTKSTFNMVAGTSMS 532
+ + S + PGV IL+ P + T++ GTSM+
Sbjct: 324 GTFRVAGFSSRSDGVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMA 383
Query: 533 CPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVN 592
PH++GV A+L P+ P I+ + TA + +G G G V
Sbjct: 384 APHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWD-----------HDTGYGLVK 432
Query: 593 PSSA 596
+A
Sbjct: 433 LDAA 436
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 61.6 bits (148), Expect = 2e-10
Identities = 37/208 (17%), Positives = 62/208 (29%), Gaps = 40/208 (19%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
+ G +I+ V+DTG+ HP + + +
Sbjct: 147 LWEEASGTNIIVAVVDTGVDGTHPDLEGQVIAGYRPAFDE-------------------- 186
Query: 193 QGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGC 252
+ G GTH A T A VG+AP A + + D
Sbjct: 187 ELPAGTDSSYGGSAGTHVAGTIAAKKDG---------KGIVGVAPGAKIMPIVIFDDPAL 237
Query: 253 -------SESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCS 305
+ V A + A D G V++ S G + + A++ + + S
Sbjct: 238 VGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGG---WGYSYTMKEAFDYAMEHGVVMVVS 294
Query: 306 AGNEGPNPSTSS-NEAPWILSVGASTTD 332
AGN + P ++ V A
Sbjct: 295 AGNNTSDSHHQYPAGYPGVIQVAALDYY 322
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 66.8 bits (161), Expect = 1e-12
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 495 KPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAA 554
+I PG ++ + W +N ++GTSM+ PH+SG+AA + + +P S
Sbjct: 224 DIEISAPGSSVYSTWY---------NGGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQ 274
Query: 555 IKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVN 592
++S + A V + G D +A G G
Sbjct: 275 LRSNLQERAKSVDIKGGYGAA----IGDDYASGFGFAR 308
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 43.7 bits (101), Expect = 5e-05
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSD 160
+ G G+ I V+DTG+ HP +
Sbjct: 19 LTSTTGGSGINIAVLDTGVNTSHPDLVN 46
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 65.4 bits (158), Expect = 3e-12
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 31/129 (24%)
Query: 468 TVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVA 527
V S ASFSS G + +++ PG + + +P + T+ +
Sbjct: 175 AVGAVDSNSNRASFSSVGA--------ELEVMAPGAGVYSTYPTN---------TYATLN 217
Query: 528 GTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVG 587
GTSM+ PH++G AAL+ S HP+ S + +++ + +TA F G
Sbjct: 218 GTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT--------------YLGSSFYYG 263
Query: 588 AGHVNPSSA 596
G +N +A
Sbjct: 264 KGLINVEAA 272
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 58.0 bits (139), Expect = 8e-10
Identities = 44/217 (20%), Positives = 78/217 (35%), Gaps = 44/217 (20%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
G V + V+DTGI HP ++G +F+
Sbjct: 17 QAQGFKGANVKVAVLDTGIQASHPDL-------------------------NVVGGASFV 51
Query: 193 QGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG- 251
G D GHGTH A T A + L KV + G
Sbjct: 52 AGEA--YNTDGNGHGTHVAGTVAALDNTTGVLGVAPS---------VSLYAVKVLNSSGS 100
Query: 252 CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGP 311
S S + + ++ A +G+DV++ + + +A + + V +AGN G
Sbjct: 101 GSYSGIVSGIEWATTNGMDVIN---MSLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGN 157
Query: 312 NPSTSSNEAPW----ILSVGASTTDRSIVASVELGNQ 344
+ ST++ P +++VGA ++ + + +G +
Sbjct: 158 SGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAE 194
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 64.9 bits (157), Expect = 5e-12
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 31/157 (19%)
Query: 440 HVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDII 499
V AAG + +ST V S+ + ASFSS GP + D++
Sbjct: 148 VVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGPEL--------DVM 199
Query: 500 GPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAI 559
PGV+I + P + + GTSM+ PH++G AAL+ S HP+W+ ++S++
Sbjct: 200 APGVSIQSTLP---------GNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSL 250
Query: 560 MTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSA 596
T + D F G G +N +A
Sbjct: 251 ENTTTKL--------------GDSFYYGKGLINVQAA 273
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 63.8 bits (154), Expect = 1e-11
Identities = 52/217 (23%), Positives = 83/217 (38%), Gaps = 43/217 (19%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
G V + V+D+GI HP K+ G + +
Sbjct: 17 HSQGYTGSNVKVAVIDSGIDSSHPDL-------------------------KVAGGASMV 51
Query: 193 QGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG- 251
T P D+ HGTH V G +G+AP A L KV DG
Sbjct: 52 PSETN-PFQDNNSHGTH---------VAGTVAALNNSIGVLGVAPSASLYAVKVLGADGS 101
Query: 252 CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGP 311
S + ++ AI + +DV+++SLG P L A+ + V +AGNEG
Sbjct: 102 GQYSWIINGIEWAIANNMDVINMSLGG---PSGSAALKAAVDKAVASGVVVVAAAGNEGT 158
Query: 312 NPSTSS----NEAPWILSVGASTTDRSIVASVELGNQ 344
+ S+S+ + P +++VGA + + +G +
Sbjct: 159 SGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGPE 195
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 64.6 bits (156), Expect = 7e-12
Identities = 43/199 (21%), Positives = 66/199 (33%), Gaps = 37/199 (18%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
W + G I V+DTG+ HP + +
Sbjct: 24 WDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIKGYDFVDNDYDPM---------------- 67
Query: 193 QGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG- 251
D HGTH A AA N + G+AP + + D +G
Sbjct: 68 ---------DLNNHGTHVAGIAAAETNNATGI--------AGMAPNTRILAVRALDRNGS 110
Query: 252 CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGP 311
+ S + A+ A D G +V++LSLG + A K V +AGN G
Sbjct: 111 GTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENA---VNYAWNKGSVVVAAAGNNGS 167
Query: 312 NPSTSSNEAPWILSVGAST 330
+ + +++VGA
Sbjct: 168 STTFEPASYENVIAVGAVD 186
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 46.9 bits (110), Expect = 4e-06
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 500 GPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAI 559
G V+++A V T + + ++GTSM+ PH++G+AALL S + I+ AI
Sbjct: 198 GTWVDVVAPGVDIVSTITGNR--YAYMSGTSMASPHVAGLAALLASQGR--NNIEIRQAI 253
Query: 560 MTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSA 596
TAD +S G G +N +A
Sbjct: 254 EQTADKISGTGTY-------------FKYGRINSYNA 277
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 63.8 bits (154), Expect = 1e-11
Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 31/129 (24%)
Query: 468 TVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVA 527
V ASFS G + DI+ PGVN+ + +P S T+ +
Sbjct: 170 AVGATDQNNNRASFSQYGAGL--------DIVAPGVNVQSTYPGS---------TYASLN 212
Query: 528 GTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVG 587
GTSM+ PH++G AAL+K +P WS I++ + TA + G
Sbjct: 213 GTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNL--------------YG 258
Query: 588 AGHVNPSSA 596
+G VN +A
Sbjct: 259 SGLVNAEAA 267
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 56.5 bits (135), Expect = 3e-09
Identities = 48/212 (22%), Positives = 75/212 (35%), Gaps = 41/212 (19%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
G GV + V+DTGI+ HP + G +F+
Sbjct: 17 HNRGLTGSGVKVAVLDTGIST-HPDL-------------------------NIRGGASFV 50
Query: 193 QGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG- 251
G D GHGTH G +G+AP A L KV G
Sbjct: 51 PGEPS--TQDGNGHGTHV---------AGTIAALNNSIGVLGVAPSAELYAVKVLGASGS 99
Query: 252 CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGP 311
S S + ++ A ++G+ V +LSL P L SA + + V ++GN G
Sbjct: 100 GSVSSIAQGLEWAGNNGMHVANLSL---GSPSPSATLEQAVNSATSRGVLVVAASGNSGA 156
Query: 312 NPSTSSNEAPWILSVGASTTDRSIVASVELGN 343
+ ++VGA+ + + + + G
Sbjct: 157 GSISYPARYANAMAVGATDQNNNRASFSQYGA 188
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.9 bits (151), Expect = 4e-11
Identities = 13/74 (17%), Positives = 29/74 (39%)
Query: 523 FNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPAD 582
GTS S P +G+ AL A+ + + ++ ++ T+ L+ +
Sbjct: 253 TESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKV 312
Query: 583 MFAVGAGHVNPSSA 596
+ G G ++ +
Sbjct: 313 SHSYGYGLLDAGAM 326
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.9 bits (94), Expect = 4e-04
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSD 160
W G G+++ ++D GI HP +
Sbjct: 30 WAQGFTGHGIVVSILDDGIEKNHPDLAG 57
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 59.9 bits (143), Expect = 3e-10
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 19/115 (16%)
Query: 490 SPGILKPDIIGPGVNILAAWP---FSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSA 546
G +KPD++ PG IL+A N S + + GTSM+ P ++G A L+
Sbjct: 212 KDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREH 271
Query: 547 HPD-----WSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSA 596
P+ +K+A++ A + L G G V +
Sbjct: 272 FVKNRGITPKPSLLKAALIAGAADIGLGYPN-----------GNQGWGRVTLDKS 315
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 50.6 bits (119), Expect = 3e-07
Identities = 40/184 (21%), Positives = 57/184 (30%), Gaps = 28/184 (15%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGE 198
G+G I+ V DTG+ G S F+G K+
Sbjct: 21 GQGQIVAVADTGLDTGRNDSSM------------HEAFRG-----KITALYAL---GRTN 60
Query: 199 PPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVY 258
D GHGTH A + GN A + +I G S +
Sbjct: 61 NANDTNGHGTHVAGSVLGNGSTNKG-------MAPQANLVFQ-SIMDSGGGLGGLPSNLQ 112
Query: 259 AAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSN 318
A G + + S GAA + + ++ + +AGNEGPN T S
Sbjct: 113 TLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISA 172
Query: 319 EAPW 322
Sbjct: 173 PGTA 176
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.9 bits (133), Expect = 7e-09
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 521 STFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLP 580
N GTS + P +GV LL A+P+ + ++ + +A + + +
Sbjct: 255 RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMG 314
Query: 581 ADM-FAVGAGHVNPSSA 596
G G ++
Sbjct: 315 KKYSHRYGFGKIDAHKL 331
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.7 bits (109), Expect = 6e-06
Identities = 24/168 (14%), Positives = 50/168 (29%), Gaps = 30/168 (17%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
W ++ G GV+ ++D G+ + D N G+ +F
Sbjct: 39 WYNNITGAGVVAAIVDDGLDYENEDLKD---------------------NFCAEGSWDFN 77
Query: 193 QGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGC 252
+ P + + + VG+ A ++ ++ D
Sbjct: 78 DNTNLPKPRLSDDYHGT-------RCAGEIAAKKGNNFCGVGVGYNAKISGIRILSGDIT 130
Query: 253 SESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEI 300
+ A++ +D D+ S S G A + A+ K +
Sbjct: 131 T-EDEAASLIYGLDVN-DIYSCSWGPADDGRHLQGPSDLVKKALVKGV 176
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 52.4 bits (124), Expect = 6e-08
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 522 TFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKP 572
+ ++GTSM+ PH++G+AA L + + +A + I TA+ L P
Sbjct: 216 STRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTANKGDLSNIP 265
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 41.2 bits (95), Expect = 3e-04
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSD 160
S ++ D + G+G + V+DTGI HP F
Sbjct: 20 TSTYYYDESAGQGSCVYVIDTGIEASHPEFEG 51
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 52.0 bits (123), Expect = 1e-07
Identities = 46/198 (23%), Positives = 71/198 (35%), Gaps = 35/198 (17%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
W + G G I ++DTG+ HP + K++G +F+
Sbjct: 24 WDIAE-GSGAKIAIVDTGVQSNHPDLAG-----------------------KVVGGWDFV 59
Query: 193 QGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG- 251
P + GHGTH A AA N G AP A + +V D G
Sbjct: 60 D--NDSTPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGS 109
Query: 252 CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGP 311
+ + V + A D G V+SLSLG +++ + + +AGN P
Sbjct: 110 GTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQAVNYAWNKGSVVVAAAGNAGNTAP 169
Query: 312 NPSTSSNEAPWILSVGAS 329
N + A + S +
Sbjct: 170 NYPAYYSNAIAVASTDQN 187
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 47.4 bits (111), Expect = 2e-06
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 17/97 (17%)
Query: 500 GPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAI 559
G V++ A T ST+ ++GTSM+ PH++GVA LL S S + I++AI
Sbjct: 197 GSWVDVAAPGSS--IYSTYPTSTYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAI 252
Query: 560 MTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSA 596
TAD +S G G VN A
Sbjct: 253 ENTADKISGTGT-------------YWAKGRVNAYKA 276
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 45.9 bits (107), Expect = 1e-05
Identities = 21/173 (12%), Positives = 45/173 (26%), Gaps = 34/173 (19%)
Query: 117 TTHTPNFLGLHQNSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEF 176
T +TP + + + G+G I ++ G
Sbjct: 4 TAYTPLDVAQAYQ---FPEGLDGQGQCIAIIALGGGYDET------------------SL 42
Query: 177 KGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIA 236
+ + + + +G G A +A
Sbjct: 43 AQYFASLGVSAPQVV--------SVSVDGATNQPTGDPNGPDGEVELDIEV----AGALA 90
Query: 237 PLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLA 289
P A +A+Y + D + + A+ ++S+S G + +A
Sbjct: 91 PGAKIAVYFAPNTDAGFLNAITTAVH-DPTHKPSIVSISWGGPEDSWAPASIA 142
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 742 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.72 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.53 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.57 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 95.92 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 93.03 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=1.8e-53 Score=494.23 Aligned_cols=358 Identities=23% Similarity=0.257 Sum_probs=262.6
Q ss_pred CCceEEEEECCCCCCCCcchhccchHHHHHhhcccccccCCCCCCceEEEEcceeeEEEEEcCHHH----HH--HhhcCC
Q 048043 29 SLETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCYKNVITGFAAKLTAEQ----AK--AMETKE 102 (742)
Q Consensus 29 ~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~----i~--~L~~~p 102 (742)
.+++|||.|+++. . ..+ ++++. +.++++.+. .++.+.++++... .+ ++..+|
T Consensus 30 ~~~~~iV~~k~~~---~-------~~~----~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (671)
T d1r6va_ 30 TEGKILVGYNDRS---E-------VDK----IVKAV-------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALK 87 (671)
T ss_dssp CTTEEEEEESSHH---H-------HHH----HHHHH-------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCS
T ss_pred CCCeEEEEECCcc---C-------HHH----HHHhc-------CCEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcCC
Confidence 5899999999755 1 112 22222 345666666 3566777765432 22 234589
Q ss_pred CeEEEEeceeeccccC----C-----------------------CCCccCccC--CCCCccCCCCCCccEEEEEcccCCC
Q 048043 103 GFISAHVEKTLQLHTT----H-----------------------TPNFLGLHQ--NSGFWKDSNLGKGVIIGVMDTGITP 153 (742)
Q Consensus 103 ~V~~V~~~~~~~~~~~----~-----------------------s~~~~g~~~--~~~~~~~~~~G~gV~VaVIDtGid~ 153 (742)
+|++|+|+...++... . ....|+++. +.++|...++|+||+|||||||||+
T Consensus 88 ~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~a~~~~~tG~gV~VaViDtGvd~ 167 (671)
T d1r6va_ 88 GIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDG 167 (671)
T ss_dssp SEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHHCSCTTCEEEEEESCCBT
T ss_pred CceEECcceeEeeccccccCCCccccccccccccccccCcCccccccCcChhhcCccHHHHhcCCCCCCEEEEEcCCcCC
Confidence 9999999865443210 0 001233332 2234334579999999999999999
Q ss_pred CCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCC---CCCCCCCCCCCchhhhhhhcccccCCCcccccCCc
Q 048043 154 GHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGS---TGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADG 230 (742)
Q Consensus 154 ~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~---~~~~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g 230 (742)
+||+|.++- +..+++..+. ...++.|..||||||||||||+.. +.
T Consensus 168 ~Hpdl~~~~-----------------------~~~~~~~~~~~~~~~~~~~d~~gHGT~VAGiiaa~~~--------~~- 215 (671)
T d1r6va_ 168 THPDLEGQV-----------------------IAGYRPAFDEELPAGTDSSYGGSAGTHVAGTIAAKKD--------GK- 215 (671)
T ss_dssp TSGGGTTTB-----------------------CCEEEGGGTEEECTTCBCCTTCSHHHHHHHHHHCCCS--------SS-
T ss_pred CChhhcCCc-----------------------ccCccccccCCCCCCCcCcccCCCCccccceeeeecc--------cc-
Confidence 999998641 1112221111 013466788999999999998742 12
Q ss_pred ceeeecCcceEEEEEEecc------CC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCHHHHHHHHhhcCCcEEE
Q 048043 231 TAVGIAPLAHLAIYKVCDF------DG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVS 303 (742)
Q Consensus 231 ~~~GvAP~A~l~~~kv~~~------~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV 303 (742)
.+.||||+|+|+++|++++ .+ ...+.+++||+||+++|++|||||||+. .....+..++..+.++|+++|
T Consensus 216 g~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~---~~~~~~~~ai~~a~~~gv~vV 292 (671)
T d1r6va_ 216 GIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGW---GYSYTMKEAFDYAMEHGVVMV 292 (671)
T ss_dssp SCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBS---CCCHHHHHHHHHHHHTTCEEE
T ss_pred ceeeecCcceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEecccccc---cCChHHHHHHHHHHhccCcEE
Confidence 2479999999999999964 23 5677899999999999999999999986 334567778888999999999
Q ss_pred EecCCCCCCC-CCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCC
Q 048043 304 CSAGNEGPNP-STSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPG 382 (742)
Q Consensus 304 ~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 382 (742)
+||||++.+. ..+++..|++|+|||.+...
T Consensus 293 ~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~------------------------------------------------- 323 (671)
T d1r6va_ 293 VSAGNNTSDSHHQYPAGYPGVIQVAALDYYG------------------------------------------------- 323 (671)
T ss_dssp EECCSCSSSCCCCBTTTSTTCEEEEEEEEET-------------------------------------------------
T ss_pred EEEecCCCCccccCCccCCceEEEEEecCCC-------------------------------------------------
Confidence 9999998765 45678899999999852110
Q ss_pred CCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEE
Q 048043 383 SLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNAT 462 (742)
Q Consensus 383 ~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 462 (742)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T d1r6va_ 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCc---------cCCCCCcccceeeccccchh
Q 048043 463 IVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSV---------ENKTNTKSTFNMVAGTSMSC 533 (742)
Q Consensus 463 i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~---------~~~~~~~~~y~~~sGTSmAa 533 (742)
....+++||+|||.. ||+|||++|+++++... .......+.|..++||||||
T Consensus 324 -----------~~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~y~~~sGTS~Aa 384 (671)
T d1r6va_ 324 -----------GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAA 384 (671)
T ss_dssp -----------TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHH
T ss_pred -----------CcceeeeccCCCCCc--------eEEecCCCeEeecCCCCccccccccccccccCCCeeeeecCHHHHH
Confidence 011578999999976 99999999999987543 11122346899999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCcCCCCcc
Q 048043 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSANDPGLI 602 (742)
Q Consensus 534 P~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~lv 602 (742)
|||||++|||+|++|+|++.|||++|++||+++... ..+..||||+||+.+||+..+.
T Consensus 385 P~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~-----------g~~~~~G~G~vna~~Av~~~~~ 442 (671)
T d1r6va_ 385 PHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN-----------GWDHDTGYGLVKLDAALQGPLP 442 (671)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSS-----------SCBTTTBTCBCCHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCC-----------CCCCCcccChhCHHHHhhCcCC
Confidence 999999999999999999999999999999987543 3567899999999999986543
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=1.3e-49 Score=415.25 Aligned_cols=264 Identities=30% Similarity=0.430 Sum_probs=215.0
Q ss_pred cCccC--CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCC
Q 048043 124 LGLHQ--NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPL 201 (742)
Q Consensus 124 ~g~~~--~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~ 201 (742)
|+++. ++.+|+++++|+||+|||||||||++||+|.++ ++..++|.... ..+.
T Consensus 13 w~l~~i~~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~-----------------------~~~~~~~~~~~--~~~~ 67 (280)
T d1dbia_ 13 YGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK-----------------------VIKGYDFVDND--YDPM 67 (280)
T ss_dssp CTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT-----------------------EEEEEETTTTB--SCCC
T ss_pred cChhhCCHHHHHhccCCCCCeEEEEEccCcCCCChhhcCC-----------------------eeecccccCCC--Cccc
Confidence 44443 467999999999999999999999999999753 34445555442 4567
Q ss_pred CCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCC
Q 048043 202 DDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAAS 280 (742)
Q Consensus 202 d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~ 280 (742)
|..+|||||||+|+|... ..+.+.||||+|+|+.+|+++.++ +...++++||+|++++|++|||||||...
T Consensus 68 d~~~HGT~vag~i~~~~~--------~~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~iin~S~g~~~ 139 (280)
T d1dbia_ 68 DLNNHGTHVAGIAAAETN--------NATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC 139 (280)
T ss_dssp CSSSHHHHHHHHHHCCCS--------SSSSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC
T ss_pred cccccccceeEeeecccc--------CCCceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHHHHcCCcEeeccccccc
Confidence 899999999999998742 223358999999999999998776 78899999999999999999999999863
Q ss_pred CCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCC
Q 048043 281 VPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPS 360 (742)
Q Consensus 281 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 360 (742)
..+....+...+.++|+++|+||||+|......+...+++|+||+..
T Consensus 140 ---~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~------------------------------ 186 (280)
T d1dbia_ 140 ---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD------------------------------ 186 (280)
T ss_dssp ---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEEC------------------------------
T ss_pred ---cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeec------------------------------
Confidence 33455666778899999999999999988788888899999999832
Q ss_pred CceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEE
Q 048043 361 KQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVH 440 (742)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~ 440 (742)
T Consensus 187 -------------------------------------------------------------------------------- 186 (280)
T d1dbia_ 187 -------------------------------------------------------------------------------- 186 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCc
Q 048043 441 VSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTK 520 (742)
Q Consensus 441 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 520 (742)
..+.++.||++||.. |++|||.+|++....
T Consensus 187 ---------------------------------~~~~~a~~S~~g~~~--------d~~apg~~i~~~~~~--------- 216 (280)
T d1dbia_ 187 ---------------------------------QYDRLASFSNYGTWV--------DVVAPGVDIVSTITG--------- 216 (280)
T ss_dssp ---------------------------------TTSCBCTTBCCSTTC--------CEEEECSSEEEEETT---------
T ss_pred ---------------------------------CCCCcCCcCCCCCcc--------cccCCccceeccccC---------
Confidence 123788999999876 999999999999887
Q ss_pred ccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCcCC
Q 048043 521 STFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSAND 598 (742)
Q Consensus 521 ~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 598 (742)
..|..++|||||||+|||++|||+|. .+++.+||++|++||+++.. ++..||+|+||+++||+
T Consensus 217 ~~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~-------------~~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 217 NRYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG-------------TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp TEEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT-------------BTTTBSSEECCHHHHHT
T ss_pred cceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC-------------CCCcCCCCeEcHHHHcC
Confidence 78999999999999999999999995 55899999999999987632 34579999999999975
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=8.7e-50 Score=443.39 Aligned_cols=367 Identities=24% Similarity=0.312 Sum_probs=235.8
Q ss_pred cCccC--CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCC
Q 048043 124 LGLHQ--NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPL 201 (742)
Q Consensus 124 ~g~~~--~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~ 201 (742)
||+.. +..+|. .+|+||+|||||||||++||+|+++ ++..+++....+...+.
T Consensus 6 wg~~~i~a~~~~~--~~G~gv~VaviDtGid~~Hp~~~~~-----------------------~~~~~~~~~~~~~~~~~ 60 (435)
T d1v6ca_ 6 WGQTFVGATVLSD--SQAGNRTICIIDSGYDRSHNDLNAN-----------------------NVTGTNNSGTGNWYQPG 60 (435)
T ss_dssp HHHHHTTGGGSCC--TTGGGCEEEEEESCCCTTSTTTTTS-----------------------EEEECCCTTSCCTTCCC
T ss_pred ccHhhcCcchhhh--cCCCCcEEEEEcCCCCCCChhhccC-----------------------eeeeeccCCCCCCCCCC
Confidence 45443 233554 5899999999999999999999853 22233443333335677
Q ss_pred CCCCCchhhhhhhcccccCCCcccccCCcceeeecC--cceEEEEEEeccCC-CCHHHHHHHHHHhhh-CCCcEEEEccC
Q 048043 202 DDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAP--LAHLAIYKVCDFDG-CSESRVYAAMDTAID-DGVDVLSLSLG 277 (742)
Q Consensus 202 d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP--~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~-~g~~VIn~SlG 277 (742)
|++||||||||||||+.. .. .+.|||| +++|+.+|++.... +...++++||+++++ ++++|||+|||
T Consensus 61 d~~gHGThvAgiiag~~~--------~~-g~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S~g 131 (435)
T d1v6ca_ 61 NNNAHGTHVAGTIAAIAN--------NE-GVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLG 131 (435)
T ss_dssp SSCCHHHHHHHHHHCCCS--------SS-BCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCC
T ss_pred CCCCcHHHHHHHHhccCC--------CC-ceEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEecccC
Confidence 899999999999999742 12 2479999 89999999998765 667789999999986 59999999999
Q ss_pred CCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEE--------E---------E
Q 048043 278 AASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVAS--------V---------E 340 (742)
Q Consensus 278 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~--------~---------~ 340 (742)
... ....+..++..+.++|+++|+||||+|....++++..+++|+||+++.+...... + .
T Consensus 132 ~~~---~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG~~i~st 208 (435)
T d1v6ca_ 132 GSG---STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILST 208 (435)
T ss_dssp BSC---CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEECSSEEEE
T ss_pred CCC---CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeecccceeee
Confidence 874 3345667777889999999999999999999999999999999997655332110 0 0
Q ss_pred eCCCeeEee-eeccCCCCCCCCc--eeEEecCCCC--CC--------CCCCcCC--CCCC-CCccceEEEeecCCc----
Q 048043 341 LGNQAVYDG-EALFQPKDFPSKQ--FPLIYPGANG--NV--------SSAQCSP--GSLS-SNIRGKLVLCERGGG---- 400 (742)
Q Consensus 341 ~~~g~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~--~~--------~~~~c~~--~~~~-~~~~g~iv~~~~g~~---- 400 (742)
+..+..... ........+.... ...+...... .. ....|.. .... .++.+++.++.+...
T Consensus 209 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (435)
T d1v6ca_ 209 VTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSS 288 (435)
T ss_dssp CSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECCSCSSSS
T ss_pred eecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceeeccCCcccc
Confidence 011110000 0000000000000 0000000000 00 0000000 0111 334455555544322
Q ss_pred -chhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccc
Q 048043 401 -ERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELA 479 (742)
Q Consensus 401 -~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 479 (742)
............+..+++.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------- 309 (435)
T d1v6ca_ 289 YPEINSTKACKTAGAKGIIVY----------------------------------------------------------- 309 (435)
T ss_dssp CTHHHHHHHHHHTTCSEEEEE-----------------------------------------------------------
T ss_pred ceeeeeceeecccCCcceEEe-----------------------------------------------------------
Confidence 12333344444444444433
Q ss_pred cccCCCCCCCC--CCCcccceEecCCcEEeccCCCc--------cCCCCCcccceeeccccchhHHHHHHHHHHHhhCCC
Q 048043 480 SFSSRGPSIAS--PGILKPDIIGPGVNILAAWPFSV--------ENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPD 549 (742)
Q Consensus 480 ~fSs~Gp~~~~--~~~~KPDI~APG~~I~sa~~~~~--------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ 549 (742)
+++.+|.... .+..||||.+||..|.++..... .........|..|||||||||||||++|||+|+||+
T Consensus 310 -~~~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~ 388 (435)
T d1v6ca_ 310 -SNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPE 388 (435)
T ss_dssp -CCSSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHHHHHHHCTT
T ss_pred -ccCCCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHHHHHHHHHHHHHHCCC
Confidence 2333333211 24678999999998875532111 001112367999999999999999999999999999
Q ss_pred CCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCcCC
Q 048043 550 WSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSAND 598 (742)
Q Consensus 550 ~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 598 (742)
|+++|||++|++||+++.. +++++.||+|+||+.+|++
T Consensus 389 ~s~~~vk~~L~~TA~~~~~-----------~~~~~~~G~G~vn~~~A~~ 426 (435)
T d1v6ca_ 389 CSASQVRAALNATADDLSV-----------AGRDNQTGYGMINAVAAKA 426 (435)
T ss_dssp SCHHHHHHHHHHHSBCCSS-----------SSCBTTTBTCBCCHHHHHH
T ss_pred CCHHHHHHHHHhhCcccCC-----------CCCCCCcccceecHHHHHH
Confidence 9999999999999998742 3567899999999999964
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=2.7e-49 Score=412.06 Aligned_cols=262 Identities=31% Similarity=0.496 Sum_probs=218.1
Q ss_pred cCccC--CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCC
Q 048043 124 LGLHQ--NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPL 201 (742)
Q Consensus 124 ~g~~~--~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~ 201 (742)
||++. +..+|.++++|+||+|||||||||++||+|+ +...++|..+. ..+.
T Consensus 6 wgl~~i~~~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~-------------------------~~~~~~~~~~~--~~~~ 58 (274)
T d1r0re_ 6 YGIPLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLN-------------------------VVGGASFVAGE--AYNT 58 (274)
T ss_dssp THHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-------------------------EEEEEECSTTC--CTTC
T ss_pred cchhhcChHHHHHcCCCCCCeEEEEECCCCCCCChhhc-------------------------ccCCccccCCC--CCCC
Confidence 44443 4568999999999999999999999999995 22334555443 4566
Q ss_pred CCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCC
Q 048043 202 DDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAAS 280 (742)
Q Consensus 202 d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~ 280 (742)
|..+|||||||||++.... . .+.|+||+|+|+.+|+++..+ ...++++++++++.+++++|+|+|||...
T Consensus 59 d~~gHGT~vAgii~~~~~~--------~-~~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~~~~i~n~S~~~~~ 129 (274)
T d1r0re_ 59 DGNGHGTHVAGTVAALDNT--------T-GVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS 129 (274)
T ss_dssp CSSSHHHHHHHHHHCCSSS--------S-BCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSS
T ss_pred Ccccccccccccccccccc--------c-cccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCceecccccccc
Confidence 8899999999999987421 1 237999999999999998877 67889999999999999999999999873
Q ss_pred CCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCC----CCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCC
Q 048043 281 VPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNP----STSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPK 356 (742)
Q Consensus 281 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 356 (742)
..........++.++++++|+||||+|... ..++...+++|+||+.+
T Consensus 130 ---~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~-------------------------- 180 (274)
T d1r0re_ 130 ---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVD-------------------------- 180 (274)
T ss_dssp ---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEEC--------------------------
T ss_pred ---chhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeEC--------------------------
Confidence 234455566688899999999999998653 34456778899999842
Q ss_pred CCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccc
Q 048043 357 DFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLL 436 (742)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~ 436 (742)
T Consensus 181 -------------------------------------------------------------------------------- 180 (274)
T d1r0re_ 181 -------------------------------------------------------------------------------- 180 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCC
Q 048043 437 PAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENK 516 (742)
Q Consensus 437 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 516 (742)
..+.+++||++||. |||+|||++|+++.+.
T Consensus 181 -------------------------------------~~~~~~~~s~~g~~--------~di~APG~~i~~~~~~----- 210 (274)
T d1r0re_ 181 -------------------------------------SNSNRASFSSVGAE--------LEVMAPGAGVYSTYPT----- 210 (274)
T ss_dssp -------------------------------------TTSCBCTTCCCSTT--------EEEEEECSSEEEEETT-----
T ss_pred -------------------------------------CCCCcccccCCCCC--------EEEEecCCCcccccCC-----
Confidence 12367899999985 4999999999999887
Q ss_pred CCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCc
Q 048043 517 TNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSA 596 (742)
Q Consensus 517 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A 596 (742)
+.|..++|||||||+|||++|||+|++|+|++++||++|++||+++. ++..||+|+||+.+|
T Consensus 211 ----~~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~--------------~~~~~G~G~ln~~~A 272 (274)
T d1r0re_ 211 ----NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG--------------SSFYYGKGLINVEAA 272 (274)
T ss_dssp ----TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS--------------CHHHHTTCBCCHHHH
T ss_pred ----CCeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------CCCceEcCeecHHHh
Confidence 78999999999999999999999999999999999999999998762 346799999999999
Q ss_pred CC
Q 048043 597 ND 598 (742)
Q Consensus 597 l~ 598 (742)
|+
T Consensus 273 ~~ 274 (274)
T d1r0re_ 273 AQ 274 (274)
T ss_dssp TC
T ss_pred cC
Confidence 86
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=1.1e-48 Score=408.59 Aligned_cols=258 Identities=32% Similarity=0.464 Sum_probs=221.2
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCch
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGT 208 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGT 208 (742)
++++|+.+ +|+||+|+|||||||++||+|.++ ++..++|.++. ..+.|..+|||
T Consensus 20 a~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~-----------------------~~~~~~~~~~~--~~~~d~~~HGT 73 (279)
T d1thma_ 20 APQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK-----------------------VVGGWDFVDND--STPQNGNGHGT 73 (279)
T ss_dssp HHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT-----------------------EEEEEETTTTB--SCCCCSSSHHH
T ss_pred HHHHHhcc-CCCCcEEEEEcCCCCCCChhhcCC-----------------------eeccccccccC--ccccccccccc
Confidence 46689887 999999999999999999999753 44556666543 56778999999
Q ss_pred hhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCH
Q 048043 209 HTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDP 287 (742)
Q Consensus 209 hVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~ 287 (742)
||||+|++...+ ...+.|+||+|+|+.+|++...+ +...+++++|+++.+.+++|+|+|||... ....
T Consensus 74 ~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~i~n~S~G~~~---~~~~ 142 (279)
T d1thma_ 74 HCAGIAAAVTNN--------STGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTV---GNSG 142 (279)
T ss_dssp HHHHHHHCCCSS--------SSSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS---CCHH
T ss_pred ccceeeeeccCC--------CccccccCCcceEEEEEEEecCCCCcHHHHHHHHHHHhhcCCceeccccCccc---cchh
Confidence 999999987422 23357999999999999998776 78889999999999999999999999873 3455
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEe
Q 048043 288 LAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIY 367 (742)
Q Consensus 288 ~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 367 (742)
...+...+.++|+++|+|+||+|......+...+++++||+.+
T Consensus 143 ~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~------------------------------------- 185 (279)
T d1thma_ 143 LQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTD------------------------------------- 185 (279)
T ss_dssp HHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEEC-------------------------------------
T ss_pred HHHHHHHHHhcCceEEEeccccccCCCcccccccccccccccc-------------------------------------
Confidence 6677778899999999999999998888888899999999842
Q ss_pred cCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHH
Q 048043 368 PGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGE 447 (742)
Q Consensus 368 ~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~ 447 (742)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T d1thma_ 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeec
Q 048043 448 SIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVA 527 (742)
Q Consensus 448 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~s 527 (742)
..+.++.||++|++. ||+|||.+|+++.+. +.|..++
T Consensus 186 --------------------------~~~~~~~~S~~G~~~--------di~Apg~~i~~~~~~---------~~~~~~s 222 (279)
T d1thma_ 186 --------------------------QNDNKSSFSTYGSWV--------DVAAPGSSIYSTYPT---------STYASLS 222 (279)
T ss_dssp --------------------------TTSCBCTTCCCCTTC--------CEEEECSSEEEEETT---------TEEEEEC
T ss_pred --------------------------CCCCCccccCCCceE--------EEeeeeeccccccCc---------ccccccC
Confidence 123688999999987 999999999999988 7899999
Q ss_pred cccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCcCC
Q 048043 528 GTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSAND 598 (742)
Q Consensus 528 GTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 598 (742)
|||||||+|||++|||+|.+| ++.+||++|++||+++. ..+..||+|+||+.+||+
T Consensus 223 GTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~-------------g~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 223 GTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKIS-------------GTGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp SHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCT-------------TBTTTBSSEECCHHHHHH
T ss_pred CcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCC-------------CCCCcceeeeEcHHHhhC
Confidence 999999999999999999765 79999999999998763 234579999999999875
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=1.4e-48 Score=405.46 Aligned_cols=256 Identities=34% Similarity=0.509 Sum_probs=218.6
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCch
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGT 208 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGT 208 (742)
+..+|.++++|+||+|+||||||| +||+|... ..++|..+. ..+.|..+|||
T Consensus 13 ~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~-------------------------~~~~~~~~~--~~~~d~~~HGT 64 (269)
T d1gcia_ 13 APAAHNRGLTGSGVKVAVLDTGIS-THPDLNIR-------------------------GGASFVPGE--PSTQDGNGHGT 64 (269)
T ss_dssp HHHHHHTTCSCTTCEEEEEESCCC-CCTTCCEE-------------------------EEEECSTTC--CSCSCSSSHHH
T ss_pred cHHHHhCCCCCCCeEEEEECCCCC-CCcccCcc-------------------------ccccccCCC--CCccccchhhh
Confidence 456999999999999999999998 89999631 234455443 45678899999
Q ss_pred hhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCH
Q 048043 209 HTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDP 287 (742)
Q Consensus 209 hVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~ 287 (742)
||||||++... .....|+||+|+|+.+|++...+ .....+.++++|+..+++++||+|||... ....
T Consensus 65 ~vAgii~~~~~---------~~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~in~s~g~~~---~~~~ 132 (269)
T d1gcia_ 65 HVAGTIAALNN---------SIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS---PSAT 132 (269)
T ss_dssp HHHHHHHCCCS---------SSBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSS---CCHH
T ss_pred eecccccccCC---------CccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhcccccccccccccc---ccch
Confidence 99999997642 12246999999999999998776 77788999999999999999999999863 3345
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEe
Q 048043 288 LAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIY 367 (742)
Q Consensus 288 ~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 367 (742)
...+...+.++|+++|+||||+|.+...+++..|++|+||+..
T Consensus 133 ~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~------------------------------------- 175 (269)
T d1gcia_ 133 LEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATD------------------------------------- 175 (269)
T ss_dssp HHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC-------------------------------------
T ss_pred HHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEc-------------------------------------
Confidence 5566678899999999999999988888889999999999842
Q ss_pred cCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHH
Q 048043 368 PGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGE 447 (742)
Q Consensus 368 ~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~ 447 (742)
T Consensus 176 -------------------------------------------------------------------------------- 175 (269)
T d1gcia_ 176 -------------------------------------------------------------------------------- 175 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeec
Q 048043 448 SIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVA 527 (742)
Q Consensus 448 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~s 527 (742)
..+.++.||++||.. ||+|||.++.++.+. ..|..++
T Consensus 176 --------------------------~~~~~~~~S~~G~~~--------di~Apg~~~~~~~~~---------~~~~~~s 212 (269)
T d1gcia_ 176 --------------------------QNNNRASFSQYGAGL--------DIVAPGVNVQSTYPG---------STYASLN 212 (269)
T ss_dssp --------------------------TTSCBCTTCCCSTTE--------EEEEECSSEEEEETT---------TEEEEEC
T ss_pred --------------------------cCCCcccccCCCCCc--------eEEEeeecceeccCC---------CceEecC
Confidence 123678999999875 999999999999887 7899999
Q ss_pred cccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCcCC
Q 048043 528 GTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSAND 598 (742)
Q Consensus 528 GTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 598 (742)
|||||||+|||++|||+|++|++++++||++|++||+++. ++..||+|+||+++|++
T Consensus 213 GTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g--------------~~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 213 GTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG--------------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp SHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS--------------CHHHHTTCBCCHHHHTC
T ss_pred CcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------CCCCcccCeEcHHHhcC
Confidence 9999999999999999999999999999999999998763 34579999999999985
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=1.7e-48 Score=407.53 Aligned_cols=259 Identities=32% Similarity=0.513 Sum_probs=216.4
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCch
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGT 208 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGT 208 (742)
++.+|.++++|+||+|||||||||++||+|+.. ..+++.... .....+..+|||
T Consensus 13 a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~-------------------------~~~~~~~~~-~~~~~~~~~HGT 66 (281)
T d1to2e_ 13 APALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA-------------------------GGASMVPSE-TNPFQDNNSHGT 66 (281)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE-------------------------EEEECCTTC-CCTTCCSSSHHH
T ss_pred cHHHHHCCCCCCCeEEEEECCCCCCCChhhhhc-------------------------CCccccCCC-CCCCcCcCCCCc
Confidence 567999999999999999999999999999632 123333321 122334679999
Q ss_pred hhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCH
Q 048043 209 HTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDP 287 (742)
Q Consensus 209 hVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~ 287 (742)
||||||+|.... ....|+||+|+|+.+|++..++ ....+++++|+|+++.+++|+|+|||.. .....
T Consensus 67 ~vAgiiag~~~~---------~~~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~~~~v~n~S~g~~---~~~~~ 134 (281)
T d1to2e_ 67 HVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGP---SGSAA 134 (281)
T ss_dssp HHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBS---CCCHH
T ss_pred eeecccccCCCC---------CCcceeecccEEEEEEEeCCCCCcCHHHHHHHHHHHHhccccccccccCCC---cchHH
Confidence 999999986321 1247999999999999998877 7788899999999999999999999986 34456
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCCCC----CCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCce
Q 048043 288 LAIGSFSAIQKEIFVSCSAGNEGPNP----STSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQF 363 (742)
Q Consensus 288 ~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 363 (742)
+..++..+.++|+++|+||||+|... ...++..+++|+||+.+
T Consensus 135 ~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~--------------------------------- 181 (281)
T d1to2e_ 135 LKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVD--------------------------------- 181 (281)
T ss_dssp HHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEEC---------------------------------
T ss_pred HHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeec---------------------------------
Confidence 77788889999999999999998753 33467788899999842
Q ss_pred eEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEeh
Q 048043 364 PLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSY 443 (742)
Q Consensus 364 ~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~ 443 (742)
T Consensus 182 -------------------------------------------------------------------------------- 181 (281)
T d1to2e_ 182 -------------------------------------------------------------------------------- 181 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccc
Q 048043 444 AAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTF 523 (742)
Q Consensus 444 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y 523 (742)
..+.++.||++||.. |++|||.+|+++.+. +.|
T Consensus 182 ------------------------------~~~~~~~~S~~G~~~--------d~~apG~~i~s~~~~---------~~~ 214 (281)
T d1to2e_ 182 ------------------------------SSNQRASFSSVGPEL--------DVMAPGVSIQSTLPG---------NKY 214 (281)
T ss_dssp ------------------------------TTSCBCTTCCCSTTC--------CEEEECSSEEEEETT---------TEE
T ss_pred ------------------------------CCCCCCcccCCCCCc--------cccCCCCCceeecCC---------Cee
Confidence 123678899999976 999999999999887 789
Q ss_pred eeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCcCCC
Q 048043 524 NMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSANDP 599 (742)
Q Consensus 524 ~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~~ 599 (742)
..++|||||||+|||++|||+|++|+|++++||++|++||+++. ++..||+|+||+.+|++.
T Consensus 215 ~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~--------------~~~~~G~G~ld~~~A~~~ 276 (281)
T d1to2e_ 215 GAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG--------------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp EEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS--------------CHHHHTTCBCCHHHHTSS
T ss_pred EcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------CCCCcccCcccHHHHHhh
Confidence 99999999999999999999999999999999999999999763 245799999999999983
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=1.1e-43 Score=375.97 Aligned_cols=291 Identities=26% Similarity=0.367 Sum_probs=219.8
Q ss_pred ccCccC--CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCC--CC
Q 048043 123 FLGLHQ--NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGST--GE 198 (742)
Q Consensus 123 ~~g~~~--~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~--~~ 198 (742)
.|++++ ++.+|..+++|+||+|+|||||||++||+|.++ +...++|..... ..
T Consensus 7 ~wgl~~i~~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~-----------------------~~~~~~~~~~~~~~~~ 63 (309)
T d2ixta1 7 PWGIKAIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN-----------------------VEQCKDFTGATTPINN 63 (309)
T ss_dssp CHHHHHHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT-----------------------EEEEEESSSSSSCEET
T ss_pred ChhHhhcCChhhhccCCCCCCeEEEEEccCCCCCChhHhcc-----------------------ccccccccCCCCCCCC
Confidence 455554 678999999999999999999999999999753 233344443321 23
Q ss_pred CCCCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCC-----CcEE
Q 048043 199 PPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDG-----VDVL 272 (742)
Q Consensus 199 ~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g-----~~VI 272 (742)
...|..+|||||||||+|.... ....+.||||+|+|+.++++...+ +..++++.+++++++.+ ..|+
T Consensus 64 ~~~d~~gHGT~VAgiiaa~~~~-------~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~ 136 (309)
T d2ixta1 64 SCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTII 136 (309)
T ss_dssp CCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred Cccccccccccccccccccccc-------cchhhhhhhhhccceeeeeecCCCCcccccccccccccccccccccccccc
Confidence 4567889999999999987422 223357999999999999998776 78888999999988753 4689
Q ss_pred EEccCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCC--CCCCCCCceEEecccCCcceeEEEEEeCCCeeEeee
Q 048043 273 SLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPS--TSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGE 350 (742)
Q Consensus 273 n~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~ 350 (742)
|+||+... .......+...+.++|+++|+||||++.... .+++..+++++|++..........
T Consensus 137 ~~s~~~~~---~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~~------------ 201 (309)
T d2ixta1 137 SMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTY------------ 201 (309)
T ss_dssp EECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTEE------------
T ss_pred cccccccc---cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccccccc------------
Confidence 99999763 3345556667888999999999999987654 345667888888764211100000
Q ss_pred eccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcccc
Q 048043 351 ALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTL 430 (742)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~ 430 (742)
T Consensus 202 -------------------------------------------------------------------------------- 201 (309)
T d2ixta1 202 -------------------------------------------------------------------------------- 201 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccC
Q 048043 431 ADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWP 510 (742)
Q Consensus 431 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~ 510 (742)
..........++++|+.. ....||||+|||.+++++.+
T Consensus 202 ----------------------------------------~~~~~~~~~~~~~~~~~~--~~~~~vdi~apG~~~~s~~~ 239 (309)
T d2ixta1 202 ----------------------------------------RVADYSSRGYISTAGDYV--IQEGDIEISAPGSSVYSTWY 239 (309)
T ss_dssp ----------------------------------------EECTTSCCCCTTTTTSSS--CCTTCCCEEEECSSEEEECT
T ss_pred ----------------------------------------cccccccccccccccccc--cCCCcceeecCCCceeeecC
Confidence 000111344567777765 35689999999999999988
Q ss_pred CCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccc
Q 048043 511 FSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGH 590 (742)
Q Consensus 511 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~ 590 (742)
. ..|..++|||||||+|||++|||+|++|+|+++|||++|++||++++..+.. ......++.+|+|+
T Consensus 240 ~---------~~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~----g~~~~~~~~~g~G~ 306 (309)
T d2ixta1 240 N---------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY----GAAIGDDYASGFGF 306 (309)
T ss_dssp T---------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBST----TCCSSSBTTTBTCB
T ss_pred C---------CcceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCc----CCccCCCcccCCCE
Confidence 7 7899999999999999999999999999999999999999999987654321 12345677889999
Q ss_pred cCc
Q 048043 591 VNP 593 (742)
Q Consensus 591 vd~ 593 (742)
+|+
T Consensus 307 ~~v 309 (309)
T d2ixta1 307 ARV 309 (309)
T ss_dssp CCC
T ss_pred ecC
Confidence 874
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=7e-43 Score=364.23 Aligned_cols=237 Identities=32% Similarity=0.469 Sum_probs=193.7
Q ss_pred CCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhh
Q 048043 135 DSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTA 214 (742)
Q Consensus 135 ~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGii 214 (742)
...+|+||+|||||||||++||+|.++ +.....+. ..+.|..+|||||||||
T Consensus 26 ~~~tG~Gv~VaViDsGid~~Hpdf~g~-----------------------~~~~~~~~-----~~~~d~~gHGT~VAgii 77 (279)
T d2pwaa1 26 DESAGQGSCVYVIDTGIEASHPEFEGR-----------------------AQMVKTYY-----YSSRDGNGHGTHCAGTV 77 (279)
T ss_dssp CTTTTTTEEEEEEESCCCTTCGGGTTC-----------------------EEEEEESS-----SCSSCSSSHHHHHHHHH
T ss_pred cCCCCCCeEEEEECcCCCCCChhhcCC-----------------------ceeccCCC-----CCcccccCccccccccc
Confidence 455999999999999999999999853 11111111 24567889999999999
Q ss_pred cccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhC-------CCcEEEEccCCCCCCCCCC
Q 048043 215 AGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDD-------GVDVLSLSLGAASVPFFED 286 (742)
Q Consensus 215 aG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~-------g~~VIn~SlG~~~~~~~~~ 286 (742)
+|+. .|+||+|+|+.+|++.... ...+.+..+++++... ++.|+|+|||.. ..+
T Consensus 78 a~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n~s~g~~----~~~ 139 (279)
T d2pwaa1 78 GSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG----YSS 139 (279)
T ss_dssp HCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE----CCH
T ss_pred cccc--------------cccCCCccccceeeecCCcccccccccchhheecccccccccccccceeccCCCc----ccc
Confidence 9863 6999999999999988765 6778889999988764 345999999975 235
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCCCC-CCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeE
Q 048043 287 PLAIGSFSAIQKEIFVSCSAGNEGPNPST-SSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPL 365 (742)
Q Consensus 287 ~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 365 (742)
.+..++.++.++|+++|+||||++.+... .+...|++|+|||..
T Consensus 140 ~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~----------------------------------- 184 (279)
T d2pwaa1 140 SVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASD----------------------------------- 184 (279)
T ss_dssp HHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEEC-----------------------------------
T ss_pred ccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEe-----------------------------------
Confidence 66777778899999999999999876543 467788999999842
Q ss_pred EecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhh
Q 048043 366 IYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAA 445 (742)
Q Consensus 366 ~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~ 445 (742)
T Consensus 185 -------------------------------------------------------------------------------- 184 (279)
T d2pwaa1 185 -------------------------------------------------------------------------------- 184 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCccccee
Q 048043 446 GESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNM 525 (742)
Q Consensus 446 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~ 525 (742)
..+.+++||++||.. ||+|||.+|+++++. +.|..
T Consensus 185 ----------------------------~~g~~~~~S~~G~~~--------dv~APG~~i~s~~~~---------~~~~~ 219 (279)
T d2pwaa1 185 ----------------------------RYDRRSSFSNYGSVL--------DIFGPGTDILSTWIG---------GSTRS 219 (279)
T ss_dssp ----------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEEETT---------TEEEE
T ss_pred ----------------------------ecCCCccccCCCCcc--------ccccccccccccccC---------CcccC
Confidence 224678999999976 999999999999987 78999
Q ss_pred eccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCc
Q 048043 526 VAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNP 593 (742)
Q Consensus 526 ~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~ 593 (742)
++|||||||+|||++|||+|++|.++++++| +|++||++. .....|+|++|+
T Consensus 220 ~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~-~ll~ta~~~---------------~~~~~g~g~~n~ 271 (279)
T d2pwaa1 220 ISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTANKG---------------DLSNIPFGTVNL 271 (279)
T ss_dssp ECSHHHHHHHHHHHHHHHHHTTSCCTTTHHH-HHHHHSEES---------------CCBSCCTTSCCE
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCChHHHHH-HHHHhCcCC---------------CCCCCCCCChhh
Confidence 9999999999999999999999999988777 477888754 234589999986
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=1.9e-41 Score=360.08 Aligned_cols=292 Identities=28% Similarity=0.350 Sum_probs=218.1
Q ss_pred CCccC-CCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchh
Q 048043 131 GFWKD-SNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTH 209 (742)
Q Consensus 131 ~~~~~-~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGTh 209 (742)
.+|.. |+||+||+|||||||||++||+|.... .| ..++...+.+... .+..|..|||||
T Consensus 12 ~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~~-----------~~~~~~~~~~~~~---~~~~d~~gHGT~ 71 (318)
T d1wmda2 12 VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------AF-----------RGKITALYALGRT---NNANDTNGHGTH 71 (318)
T ss_dssp HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------TT-----------TTCEEEEEETTTT---TCCCCSSSHHHH
T ss_pred hHHHccCccccCeEEEEEcCCcCCCCcccccCc------cc-----------CCcEEeecCCCCC---CCCCCCCCCCcc
Confidence 36664 999999999999999999999997421 11 2233334444333 456788999999
Q ss_pred hhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC---CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCC
Q 048043 210 TATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG---CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFED 286 (742)
Q Consensus 210 VAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~ 286 (742)
|||||+|+... ..||||+|+|+.+|+++..+ .....+..+++++...+++|+|+|||.........
T Consensus 72 vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~g~~~~~~~~~ 140 (318)
T d1wmda2 72 VAGSVLGNGST-----------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTT 140 (318)
T ss_dssp HHHHHHCCSSS-----------SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEECCCBCCTTCCCH
T ss_pred ceeeccccccc-----------cchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCceeecccccccccccch
Confidence 99999986321 26999999999999998765 34445788999999999999999999876555555
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCCCCCC--CCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCcee
Q 048043 287 PLAIGSFSAIQKEIFVSCSAGNEGPNPSTSS--NEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFP 364 (742)
Q Consensus 287 ~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~--~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 364 (742)
....+...+.++++++|+|+||.|.+..... ...++++++.+....... +
T Consensus 141 ~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~-----------------~----------- 192 (318)
T d1wmda2 141 DSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPS-----------------F----------- 192 (318)
T ss_dssp HHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGG-----------------G-----------
T ss_pred hHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCcccc-----------------c-----------
Confidence 6666666778899999999999997765443 445666666553211000 0
Q ss_pred EEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehh
Q 048043 365 LIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYA 444 (742)
Q Consensus 365 ~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~ 444 (742)
.
T Consensus 193 --------------~----------------------------------------------------------------- 193 (318)
T d1wmda2 193 --------------G----------------------------------------------------------------- 193 (318)
T ss_dssp --------------C-----------------------------------------------------------------
T ss_pred --------------c-----------------------------------------------------------------
Confidence 0
Q ss_pred hHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCcc---CCCCCcc
Q 048043 445 AGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVE---NKTNTKS 521 (742)
Q Consensus 445 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~---~~~~~~~ 521 (742)
........+..+|++||.. ....|||++|||.+|+++...... .......
T Consensus 194 -------------------------~~~~~~~~~~~~s~~G~~~--~~~~~~~~~a~G~~i~~~~~~~~~~~~~~~~~~~ 246 (318)
T d1wmda2 194 -------------------------SYADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSFWANHDS 246 (318)
T ss_dssp -------------------------GGGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTCCGGGSSEEEET
T ss_pred -------------------------cccccccccccccccCCCc--CCCcccceeecCceEEeccccccccCccccCCCc
Confidence 0011223677899999987 457899999999999998766431 1112235
Q ss_pred cceeeccccchhHHHHHHHHHHHhhC-----CCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCc
Q 048043 522 TFNMVAGTSMSCPHLSGVAALLKSAH-----PDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSA 596 (742)
Q Consensus 522 ~y~~~sGTSmAaP~VAG~aALl~q~~-----p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A 596 (742)
.|..++|||||||+|||++|||+|++ +.+++.+||++|++||+++.. +.++..||||+||+.+|
T Consensus 247 ~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~-----------~~~~~~~G~G~ld~~~A 315 (318)
T d1wmda2 247 KYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL-----------GYPNGNQGWGRVTLDKS 315 (318)
T ss_dssp TEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS-----------CSSCTTTTTCBCCHHHH
T ss_pred ceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCC-----------CCCCCCeeeceecHHHH
Confidence 67889999999999999999999975 458899999999999997743 34667899999999999
Q ss_pred CC
Q 048043 597 ND 598 (742)
Q Consensus 597 l~ 598 (742)
|+
T Consensus 316 l~ 317 (318)
T d1wmda2 316 LN 317 (318)
T ss_dssp HT
T ss_pred hC
Confidence 86
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.4e-39 Score=347.98 Aligned_cols=280 Identities=17% Similarity=0.210 Sum_probs=191.6
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCC----CCCCCCCCC
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGS----TGEPPLDDE 204 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~----~~~~~~d~~ 204 (742)
++++|.++++|+||+|||||||||++||+|.++.. .+..| .+.+.. ......|..
T Consensus 26 ~~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~~------------~~~~~---------~~~~~~~~~~~~~~~~~~~ 84 (334)
T d1p8ja2 26 VKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD------------PGASF---------DVNDQDPDPQPRYTQMNDN 84 (334)
T ss_dssp CHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC------------GGGCE---------ETTTTBSCCCCCCCTTCTT
T ss_pred HHHHHhcCCCCCCeEEEEEccCCCCCChhHhhccc------------cCCCc---------cccCCCCccccccccccCc
Confidence 44699999999999999999999999999985311 01111 111000 013345789
Q ss_pred CCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhh-CCCcEEEEccCCCCCC-
Q 048043 205 GHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAID-DGVDVLSLSLGAASVP- 282 (742)
Q Consensus 205 gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~~VIn~SlG~~~~~- 282 (742)
+|||||||||+|...++ ....|+||+++++.+|++... ..+.+.++.++++ ++++++|+|||.....
T Consensus 85 gHGT~vAgiia~~~~n~--------~~~~g~a~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~n~S~g~~~~~~ 153 (334)
T d1p8ja2 85 RHGTRCAGEVAAVANNG--------VCGVGVAYNARIGGVRMLDGE---VTDAVEARSLGLNPNHIHIYSASWGPEDDGK 153 (334)
T ss_dssp CHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECSSSC---CCHHHHHHHHTSCTTTCCEEEECCBSCCSSS
T ss_pred cchhhhhhhhhhccccc--------cccccccccccccchhhcccc---ccchHHHHHHHhhhcCCcEEeCCCCCCCcCc
Confidence 99999999999875321 123699999999999987643 3456677777775 6899999999975421
Q ss_pred CCCC--------HHHHHHHHhhcCCcEEEEecCCCCCCCCCCC----CCCCceEEecccCCcceeEEEEEeCCCeeEeee
Q 048043 283 FFED--------PLAIGSFSAIQKEIFVSCSAGNEGPNPSTSS----NEAPWILSVGASTTDRSIVASVELGNQAVYDGE 350 (742)
Q Consensus 283 ~~~~--------~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~----~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~ 350 (742)
.... ....+...+..+|+++|+||||++....... ...+.+++|++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~--------------------- 212 (334)
T d1p8ja2 154 TVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSA--------------------- 212 (334)
T ss_dssp CCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEE---------------------
T ss_pred ccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCcccccccccccccccc---------------------
Confidence 1111 1222333456789999999999876543221 123344444442
Q ss_pred eccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcccc
Q 048043 351 ALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTL 430 (742)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~ 430 (742)
T Consensus 213 -------------------------------------------------------------------------------- 212 (334)
T d1p8ja2 213 -------------------------------------------------------------------------------- 212 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCc-----E
Q 048043 431 ADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVN-----I 505 (742)
Q Consensus 431 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~-----I 505 (742)
...+....||++|+... .+..+||.. +
T Consensus 213 ------------------------------------------~~~g~~~~~s~~~~~~~------~~~~~~~~~~~~~~~ 244 (334)
T d1p8ja2 213 ------------------------------------------TQFGNVPWYSEACSSTL------ATTYSSGNQNEKQIV 244 (334)
T ss_dssp ------------------------------------------CTTSCCCTTCCBCTTCC------EEEECCCSTTSCCEE
T ss_pred ------------------------------------------ccCCceeeecccCCccc------ccccccccccccccc
Confidence 11234556666666542 244444432 3
Q ss_pred EeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCc
Q 048043 506 LAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFA 585 (742)
Q Consensus 506 ~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~ 585 (742)
.+.... ..|..++|||||||+|||++|||+|++|+|++.|||++|++||++.......+.........+..
T Consensus 245 ~~~~~~---------~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~~~~~~~~~~~~~~~~ 315 (334)
T d1p8ja2 245 TTDLRQ---------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHS 315 (334)
T ss_dssp EEETTT---------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECTTSCEEBTT
T ss_pred ccccCC---------ccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCccccccCCCcccCCC
Confidence 333333 67889999999999999999999999999999999999999999876554433333333344568
Q ss_pred ccccccCcCCcCC
Q 048043 586 VGAGHVNPSSAND 598 (742)
Q Consensus 586 ~G~G~vd~~~Al~ 598 (742)
||+|+||+++||+
T Consensus 316 ~G~G~lna~~Av~ 328 (334)
T d1p8ja2 316 YGYGLLDAGAMVA 328 (334)
T ss_dssp TBTCBCCHHHHHH
T ss_pred CcceEeCHHHHHH
Confidence 9999999999987
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-39 Score=348.33 Aligned_cols=285 Identities=19% Similarity=0.214 Sum_probs=203.2
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCC-CCCCCCCCCCc
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGST-GEPPLDDEGHG 207 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~-~~~~~d~~gHG 207 (742)
+..+|.++++|+||+|||||||||++||+|.++-. ....++|.+..+ .....++.+||
T Consensus 35 ~~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~HG 93 (339)
T d2id4a2 35 VLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC---------------------AEGSWDFNDNTNLPKPRLSDDYHG 93 (339)
T ss_dssp CHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC---------------------GGGCEETTTTBSCCCCCSTTTTHH
T ss_pred HHHHHhcCCCCCCcEEEEECcCcCCCChHHhcCcc---------------------cccccccccCCCccCCCccccccc
Confidence 45689999999999999999999999999986411 011234443322 23445678999
Q ss_pred hhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhhCCCcEEEEccCCCCCC-C---
Q 048043 208 THTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVP-F--- 283 (742)
Q Consensus 208 ThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~-~--- 283 (742)
|||||+|+|.... ...+.|+||+|+|+.+++.... ....++..++.++++.. +|+|+|||..... .
T Consensus 94 T~vag~iaa~~~~--------~~~~~Gvap~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~v~~~s~g~~~~~~~~~~ 163 (339)
T d2id4a2 94 TRCAGEIAAKKGN--------NFCGVGVGYNAKISGIRILSGD-ITTEDEAASLIYGLDVN-DIYSCSWGPADDGRHLQG 163 (339)
T ss_dssp HHHHHHHHCCSSS--------SSSCCCTTTTSEEEEEECTTSC-CCHHHHHHHTTTTTTTC-SEEEECEESCCSSSCCBC
T ss_pred ceeeecccccccc--------cccccccccccccceEEEeecc-ccchHHHHHHHHHHhhC-CEEeccCCCCCCcccccC
Confidence 9999999987422 2224799999999999987533 56777888888877664 8999999975311 1
Q ss_pred CCCH-----HHHHHHHhhcCCcEEEEecCCCCCCCCCC--C--CCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccC
Q 048043 284 FEDP-----LAIGSFSAIQKEIFVSCSAGNEGPNPSTS--S--NEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQ 354 (742)
Q Consensus 284 ~~~~-----~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~--~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~ 354 (742)
.... ...+...+..+|+++|+||||++...... + ...+.+++|++.
T Consensus 164 ~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 218 (339)
T d2id4a2 164 PSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAI------------------------- 218 (339)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEE-------------------------
T ss_pred ccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCccccccccccccccccccc-------------------------
Confidence 1111 22233345579999999999987553221 1 122333333331
Q ss_pred CCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCc
Q 048043 355 PKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPH 434 (742)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~ 434 (742)
T Consensus 219 -------------------------------------------------------------------------------- 218 (339)
T d2id4a2 219 -------------------------------------------------------------------------------- 218 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCcc
Q 048043 435 LLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVE 514 (742)
Q Consensus 435 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~ 514 (742)
...+..+.||++|+.. ...++..+||..+.++....
T Consensus 219 --------------------------------------~~~g~~~~~s~~~~~~----~~~~~~~~~g~~~~s~~~~~-- 254 (339)
T d2id4a2 219 --------------------------------------DHKDLHPPYSEGCSAV----MAVTYSSGSGEYIHSSDING-- 254 (339)
T ss_dssp --------------------------------------CTTSCCCTTCCCCTTE----EEEEECSBTTBCEEEECSTT--
T ss_pred --------------------------------------cccccccccccccCcc----ceeeeeeccccccceeccCC--
Confidence 2234566777777764 34568888999998876552
Q ss_pred CCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCc-cccCCCCCCCCCcccccccCc
Q 048043 515 NKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKP-IVDQRLLPADMFAVGAGHVNP 593 (742)
Q Consensus 515 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~-~~~~~~~~~~~~~~G~G~vd~ 593 (742)
..|..++|||||||||||++|||+|++|+|++.|||.+|++||++++..... ..+....+..+..||||+||+
T Consensus 255 ------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~G~ln~ 328 (339)
T d2id4a2 255 ------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDA 328 (339)
T ss_dssp ------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSEEBTTTBTCBCCH
T ss_pred ------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCccccccCCCCCcCCCccchhhCH
Confidence 5788999999999999999999999999999999999999999987644322 222223344566799999999
Q ss_pred CCcCCC
Q 048043 594 SSANDP 599 (742)
Q Consensus 594 ~~Al~~ 599 (742)
.+||+.
T Consensus 329 ~~Av~~ 334 (339)
T d2id4a2 329 HKLIEM 334 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=6.7e-32 Score=290.43 Aligned_cols=313 Identities=15% Similarity=0.145 Sum_probs=183.6
Q ss_pred cCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhh
Q 048043 134 KDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATT 213 (742)
Q Consensus 134 ~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGi 213 (742)
.++++|+||+|||||||||++||+|.+. |+. .+ .... ...+.+..+|+||++++
T Consensus 18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~---~~-----------~~~~----~~~~~~~~g~~~~~~g~ 71 (357)
T d1t1ga_ 18 PEGLDGQGQCIAIIALGGGYDETSLAQY--------FAS---LG-----------VSAP----QVVSVSVDGATNQPTGD 71 (357)
T ss_dssp CTTCCCTTCEEEEEESSCCCCHHHHHHH--------HHH---TT-----------CCCC----CEEEEESTTCCCCCCSC
T ss_pred CCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhh---cC-----------CCCC----CCceeCCCCCCCCCCCc
Confidence 3689999999999999999999999731 100 00 0000 01233567888888888
Q ss_pred hcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhh---hCCCcEEEEccCCCCCCC---CCCH
Q 048043 214 AAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAI---DDGVDVLSLSLGAASVPF---FEDP 287 (742)
Q Consensus 214 iaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~---~~g~~VIn~SlG~~~~~~---~~~~ 287 (742)
+++...+.. .....+.||||+|+|+.+|+.... ..++.++++++ +++++|||+|||...... ....
T Consensus 72 ~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~~~----~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~ 143 (357)
T d1t1ga_ 72 PNGPDGEVE----LDIEVAGALAPGAKIAVYFAPNTD----AGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAA 143 (357)
T ss_dssp TTSTHHHHH----HHHHHHHHHSTTSEEEEEECCSSH----HHHHHHHHHHHHCTTTCCSEEEECCCEEGGGSCHHHHHH
T ss_pred ccccccccc----CCcccceeecccCeEEEEecccCC----CchHHHHHHHHHhhhcCCeEEecccccCcCccccchHHH
Confidence 776432111 001124799999999999997543 33445555544 568999999999853221 1234
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCCCCCC--------CCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCC
Q 048043 288 LAIGSFSAIQKEIFVSCSAGNEGPNPST--------SSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFP 359 (742)
Q Consensus 288 ~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 359 (742)
+......+..+|+++|+|+||+|..... .+...+++++|++...... .+. ....+.+....
T Consensus 144 ~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~-~~~~~~~~~~~-- 212 (357)
T d1t1ga_ 144 MNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVAS--------AGR-IERETVWNDGP-- 212 (357)
T ss_dssp HHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEEC--------SSC-EEEEEECBCHH--
T ss_pred HHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCC--------CCc-cccceeccccc--
Confidence 5555566778999999999999854322 2345678888877432211 000 00000000000
Q ss_pred CCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEE
Q 048043 360 SKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAV 439 (742)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~ 439 (742)
. .... .++ ..
T Consensus 213 ----~-~~~~------------------------------------------~~g------------~s----------- 222 (357)
T d1t1ga_ 213 ----D-GGST------------------------------------------GGG------------VS----------- 222 (357)
T ss_dssp ----H-HCBC------------------------------------------CCE------------EC-----------
T ss_pred ----c-cccc------------------------------------------cCC------------cc-----------
Confidence 0 0000 000 00
Q ss_pred EEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEE--eccCCCccCCC
Q 048043 440 HVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNIL--AAWPFSVENKT 517 (742)
Q Consensus 440 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~--sa~~~~~~~~~ 517 (742)
..+ ............+++.+++. .++.|||+.+++.... +....
T Consensus 223 -----------------------~~~---~~p~~~~~~~~~~~~~~~~~--~~~~~pd~~~~~~~~~~~~~~~~------ 268 (357)
T d1t1ga_ 223 -----------------------RIF---PLPSWQERANVPPSANPGAG--SGRGVPDVAGNADPATGYEVVID------ 268 (357)
T ss_dssp -----------------------SSS---CCCGGGTTSCCCCCSSTTCC--CCCEECSEEEECCTTEEEEEEET------
T ss_pred -----------------------ccc---ccCcccccccccccccCCCC--CCceecceecccCCCCceEEecC------
Confidence 000 00011223556677777776 6799999999876554 44444
Q ss_pred CCcccceeeccccchhHHHHHHHHHHHhhCCC---CCHHHHHHHHHcccccccCCCCccccC----CCCCCCCCcccccc
Q 048043 518 NTKSTFNMVAGTSMSCPHLSGVAALLKSAHPD---WSPAAIKSAIMTTADIVSLDGKPIVDQ----RLLPADMFAVGAGH 590 (742)
Q Consensus 518 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~---~s~~~ik~~L~~TA~~~~~~g~~~~~~----~~~~~~~~~~G~G~ 590 (742)
+.|..++|||||||||||++|||+|+++. +...+++++...+.+++.......... ...+.++..+|+|+
T Consensus 269 ---~~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g~~~~~~~~~~~~a~~G~d~~tG~G~ 345 (357)
T d1t1ga_ 269 ---GETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNNDIANRARIYQAGPGWDPCTGLGS 345 (357)
T ss_dssp ---TEEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSCBCCCSSSSCCSBCCSSSBTTTBTCE
T ss_pred ---CceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccceecccccCCCCCCCCCcccCccCCCCCccCch
Confidence 78999999999999999999999998753 233444433333323221110000000 13456678899999
Q ss_pred cCcCCcCC
Q 048043 591 VNPSSAND 598 (742)
Q Consensus 591 vd~~~Al~ 598 (742)
+|+.++++
T Consensus 346 ~n~~~~~~ 353 (357)
T d1t1ga_ 346 PIGIRLLQ 353 (357)
T ss_dssp ECHHHHHH
T ss_pred hhHHHHHH
Confidence 99887765
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=1e-28 Score=266.99 Aligned_cols=163 Identities=14% Similarity=0.137 Sum_probs=114.0
Q ss_pred CCCCCccEEEEEcccCCCC-CCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhh
Q 048043 136 SNLGKGVIIGVMDTGITPG-HPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTA 214 (742)
Q Consensus 136 ~~~G~gV~VaVIDtGid~~-Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGii 214 (742)
..+|+||+|||||+|.++. |+||.. |... .+...++ .... ....+..+||||+++++
T Consensus 21 ~~tG~gvtVaIid~G~~~~~~~Dl~~---------f~~~--~~~~~~~-----~~~~------~~~~~~~~~~~~~~~~~ 78 (369)
T d1ga6a_ 21 APTAANTTVGIITIGGVSQTLQDLQQ---------FTSA--NGLASVN-----TQTI------QTGSSNGDYSDDQQGQG 78 (369)
T ss_dssp SCCEEEEEEEEEEESBCHHHHHHHHH---------HHHH--TTCCCCC-----EEEE------ECSCTTSCCCBCHHHHH
T ss_pred CCCCCCcEEEEEecCCcccCHHHHHH---------HHHh--cCCCCCC-----CCee------cCCCCCCCCCCCCCcce
Confidence 4589999999999998764 666641 0000 0000000 0000 12335678999999998
Q ss_pred cccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhh-CCCcEEEEccCCCC----CCCCCCHH
Q 048043 215 AGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAID-DGVDVLSLSLGAAS----VPFFEDPL 288 (742)
Q Consensus 215 aG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~-~g~~VIn~SlG~~~----~~~~~~~~ 288 (742)
.+.... ..+.||||+|+|+.++++.+.+ ....+++++|+||++ ++++|||+|||... .....+.+
T Consensus 79 e~~ld~---------~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~~~~~~~~~ 149 (369)
T d1ga6a_ 79 EWDLDS---------QSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAE 149 (369)
T ss_dssp HHHHHH---------HHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHH
T ss_pred eecccc---------ccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeeccccccccCCCcchHHHHH
Confidence 865311 1247999999999999998876 677889999999986 57999999999753 12333456
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCCC-------------CCCCCCCceEEeccc
Q 048043 289 AIGSFSAIQKEIFVSCSAGNEGPNPS-------------TSSNEAPWILSVGAS 329 (742)
Q Consensus 289 ~~a~~~a~~~Gi~vV~AAGN~g~~~~-------------~~~~~~p~vitVga~ 329 (742)
..++.++..+|++||+||||+|.... ..+...+++++|++.
T Consensus 150 ~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t 203 (369)
T d1ga6a_ 150 DRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGT 203 (369)
T ss_dssp HHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEE
T ss_pred HHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeee
Confidence 66777888999999999999986432 223567888999874
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.72 E-value=1.5e-08 Score=79.40 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=54.3
Q ss_pred CceEEEEECCCCCCCCcchhccchHHHHHhhcccccccCCCCCCceEEEEcceeeEEEEEcCHHHHHHhhcCCCeEEEEe
Q 048043 30 LETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCYKNVITGFAAKLTAEQAKAMETKEGFISAHV 109 (742)
Q Consensus 30 ~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~i~~L~~~p~V~~V~~ 109 (742)
.++|||.|+++. +... ...+ .+.++ ..+.++.+.|+ .|+||++++++++++.|+++|+|.+||+
T Consensus 1 e~~YIV~fK~~~---~~~~-~~~~----~~~v~-------~~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~ 64 (71)
T d1scjb_ 1 EKKYIVGFKQTM---SAMS-SAKK----KDVIS-------QKGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEE 64 (71)
T ss_dssp CEEEEEEECSSS---SCCS-HHHH----HHHHH-------TTTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEE
T ss_pred CCcEEEEECCCC---ChHH-HHHH----HHHHH-------HcCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeC
Confidence 368999999987 3322 1111 11222 34678999998 6999999999999999999999999999
Q ss_pred ceeecc
Q 048043 110 EKTLQL 115 (742)
Q Consensus 110 ~~~~~~ 115 (742)
+..++.
T Consensus 65 D~v~~a 70 (71)
T d1scjb_ 65 DHIAHE 70 (71)
T ss_dssp CCEEEE
T ss_pred CcEEEc
Confidence 998754
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.53 E-value=7.7e-08 Score=75.52 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=48.6
Q ss_pred CceEEEEECCCCCCCCcchhccchHHHHHhhcccccccCCCCCCceEEEEc-ceeeEEEEEcCHHHHHHhhcCCC--eEE
Q 048043 30 LETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCYK-NVITGFAAKLTAEQAKAMETKEG--FIS 106 (742)
Q Consensus 30 ~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~-~~~~g~s~~~~~~~i~~L~~~p~--V~~ 106 (742)
.|+|||+||++. .... ...+..++.. .+.++.+.|. +.|+||+++++++.++.|+++|+ |.+
T Consensus 2 aG~YIVvlK~~~---~~~~-~~~~~~~~~~-----------~~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~y 66 (72)
T d1v5ib1 2 AGKFIVIFKNDV---SEDK-IRETKDEVIA-----------EGGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDS 66 (72)
T ss_dssp CEEEEEEECTTC---CHHH-HHHHHHHHHH-----------HTCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEE
T ss_pred CccEEEEECCCC---CHHH-HHHHHHHHHh-----------cCCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCce
Confidence 589999999977 2222 2222222221 2445667776 58999999999999999999665 999
Q ss_pred EEece
Q 048043 107 AHVEK 111 (742)
Q Consensus 107 V~~~~ 111 (742)
||++.
T Consensus 67 VE~D~ 71 (72)
T d1v5ib1 67 IEEDH 71 (72)
T ss_dssp EEECC
T ss_pred ECCCC
Confidence 99986
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.57 E-value=0.016 Score=47.59 Aligned_cols=90 Identities=13% Similarity=0.030 Sum_probs=62.6
Q ss_pred CCCCceeeeeCCccEEEEEEEEeeCCCCce-EEEEEECCCCcEEEEEcCeeEecCCCcEEEEEEEEEEccC-CCCceEEE
Q 048043 645 LNYPSFSVILGSTSQTYNRTVTNVGQAESS-YTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRSQK-TSALFAQG 722 (742)
Q Consensus 645 ln~ps~~~~~~~~~~~~~~tv~n~~~~~~~-y~~~~~~p~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~-~~~~~~~G 722 (742)
+..|++++.- +...+++.+|+|.|+...+ -++....|.|=+++ +....+.| |++++++++++++.. .. +.|.=
T Consensus 6 ~t~p~~~v~p-G~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~--~~~~~L~p-G~s~~~~~~Vt~p~~a~~-G~Y~i 80 (103)
T d1w8oa1 6 FTIPDVALEP-GQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQ--GSVEPLMP-GRQAKGQVTITVPAGTTP-GRYRV 80 (103)
T ss_dssp EECCCEEECT-TCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEE--EEECCBCT-TCEEEEEEEEECCTTCCC-EEEEE
T ss_pred ccCcceeeCC-CCeEEEEEEEEeCCCCceeeeeEEEcCCCCcccc--CcceeeCC-CCcEEEEEEEECCCCCCC-ceEEE
Confidence 4456655433 4479999999999987654 46778899997664 55566777 999999999999854 44 34444
Q ss_pred EEEEEcCceEEEEeEEE
Q 048043 723 YLSWVSTKHTVRSPIAV 739 (742)
Q Consensus 723 ~i~~~~~~~~v~~p~~v 739 (742)
.+.+.++.......+.+
T Consensus 81 ~~~a~~~~~~~s~t~tv 97 (103)
T d1w8oa1 81 GATLRTSAGNASTTFTV 97 (103)
T ss_dssp EEEEEETTEEEEEEEEE
T ss_pred EEEEEeCCcceEEEEEE
Confidence 46677665555444444
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.92 E-value=0.0046 Score=56.73 Aligned_cols=69 Identities=19% Similarity=0.242 Sum_probs=54.8
Q ss_pred CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccc-------------cCC--------------------
Q 048043 386 SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYST-------------LAD-------------------- 432 (742)
Q Consensus 386 ~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~-------------~~~-------------------- 432 (742)
.+++|||+|+++|.+.+.+|..+++..||+|+|+|.+..+.... ..|
T Consensus 59 ~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~~~~ 138 (193)
T d1de4c2 59 TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSS 138 (193)
T ss_dssp SCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSCCCT
T ss_pred cccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCccccC
Confidence 47899999999999999999999999999999999764321100 001
Q ss_pred -CccccEEEEehhhHHHHHHHHh
Q 048043 433 -PHLLPAVHVSYAAGESIKAYIN 454 (742)
Q Consensus 433 -~~~~p~~~i~~~~g~~l~~~~~ 454 (742)
-..||+.-|+..+++.|+..+.
T Consensus 139 ~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 139 GLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp TSCSSCEEECCHHHHHHHHTTBC
T ss_pred CCCcCCeeeCCHHHHHHHHHHcC
Confidence 1247899999999999988774
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.03 E-value=0.06 Score=50.61 Aligned_cols=38 Identities=34% Similarity=0.409 Sum_probs=35.7
Q ss_pred CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccC
Q 048043 386 SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDK 423 (742)
Q Consensus 386 ~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~ 423 (742)
-+++|||+|+++|.+.+.+|..+++..||+|+|+|.+.
T Consensus 77 i~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysDP 114 (233)
T d3bi1a2 77 INCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDP 114 (233)
T ss_dssp CCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCH
T ss_pred CcccceEEEEeCCCCchhHHHHHHHHcCceEEEEecCh
Confidence 47899999999999999999999999999999999874
|