Citrus Sinensis ID: 048047

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460------
AENHENFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNLVFSTPTNQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKYDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAVPRTLEQNATMLLHKWQYIADRVHEDLFISPFLYRANSSMVCLFTSLFLGGVDRLLPLMQESFPELGLTKEDCREMSFIESVVYINGFEIREFFKGKADYVMEPIPKEAFEGLYDLFYKEDPRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLYYADWQDATDEASQRHKNMLNKLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGDTSVQEAGVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNLLKDEL
cccHHHHHHHHHccccccccEEEcccccccHHHHHHccccccccccccccccEEEEEccHHHHHHHHHHHHHcccEEEEEccccccccccccccccEEEEEccccccEEEcccccEEEEcccccHHHHHHHHHHHccccEEEccccccccEEcEEEEccEEEEcccccccEEEEEccccccEEEEEEEEEEEEccccEEEEEEEEccHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccEEEEEEEEEEccHHHHHHHHHHccccccccccccccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccccccEEEEEEEcccccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccccccc
cccHHHHHHHHHccccccccEEEccccccHHHHHHHHHHccccccccccccEEEEEcccHHHHHEHEHHHHHcccEEEEEcccccccccEEEccccEEEEEcHHcccEEEEcccccEEEEccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHccEEEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccHHccHHHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEEcccHHHHHHHHHHHccHccccHccHHEHcHHHEEHEHcccccccccccccccccccccHHHHHHHHHHHHccccccccEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccHEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccHHHHHcc
AENHENFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNlvfstptnqkppfiitpfHVSEIQAAIKCSKKSGLQIRvrsgghdleglssisdvpFIIVDLINFSEISVNAEAKtawvqsgatvGQLNYRIAEKSQnllafpvgtcpgvavgghfsgggyGALLRKYDLFwairggggpsfGIIISWKielvdvpstvtvfAVPRTLEQNATMLLHKWQYIADRvhedlfispflyranssMVCLFTSlflggvdrllplmqesfpelgltkedcreMSFIESVVYINGFEIReffkgkadyvmepipkeaFEGLYDlfykedprtygllvffpyggkmsetseseipfphragnIYTLLYYADWQDATDEASQRHKNMLNKLFNymtpyvaknprtayinyrdldigtnnklgdtsvqeagvwgkkyfknnfYRLVHVKTmvdpenffrneqsippfnllkdel
AENHENFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNLVFSTPTNQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSgghdleglssisDVPFIIVDLINFSEISVNAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKYDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAVPRTLEQNATMLLHKWQYIADRVHEDLFISPFLYRANSSMVCLFTSLFLGGVDRLLPLMQESFPELGLTKEDCREMSFIESVVYINGFEIREFFKGKADYVMEPIPKEAFEGLYDLFYKEDPRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLYYADWQDATDEASQRHKNMLNKLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGDTSVQEAGVWGKKYFKNNFYRLVHVKTMVdpenffrneqsippfnllkdel
AENHENFLKCLSLQSDTISKVIYTQNNssyssvlkssIQNLVFSTPTNQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPgvavgghfsgggygaLLRKYDLFWAirggggpsfgiiiSWKIELVDVPSTVTVFAVPRTLEQNATMLLHKWQYIADRVHEDLFISPFLYRANSSMVCLFTSLFLGGVDRLLPLMQESFPELGLTKEDCREMSFIESVVYINGFEIREFFKGKADYVMEPIPKEAFEGLYDLFYKEDPRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLYYADWQDATDEASQRHKNMLNKLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGDTSVQEAGVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNLLKDEL
******FLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNLVFSTPTNQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKYDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAVPRTLEQNATMLLHKWQYIADRVHEDLFISPFLYRANSSMVCLFTSLFLGGVDRLLPLMQESFPELGLTKEDCREMSFIESVVYINGFEIREFFKGKADYVMEPIPKEAFEGLYDLFYKEDPRTYGLLVFFPYGGK********IPFPHRAGNIYTLLYYADWQDATDEA**RHKNMLNKLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGDTSVQEAGVWGKKYFKNNFYRLVHVKTMVDPENFFR***************
**NHENFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNLVFSTPTNQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKYDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAVPRTLEQNATMLLHKWQYIADRVHEDLFISPFLYRANSSMVCLFTSLFLGGVDRLLPLMQESFPELGLTKEDCREMSFIESVVYINGFEIREFFKGKADYVMEPIPKEAFEGLYDLFYKEDPRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLYYADWQDATDEASQRHKNMLNKLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGDTSVQEAGVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPF*******
AENHENFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNLVFSTPTNQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKYDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAVPRTLEQNATMLLHKWQYIADRVHEDLFISPFLYRANSSMVCLFTSLFLGGVDRLLPLMQESFPELGLTKEDCREMSFIESVVYINGFEIREFFKGKADYVMEPIPKEAFEGLYDLFYKEDPRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLYYADWQDATDEASQRHKNMLNKLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGDTSVQEAGVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNLLKDEL
*ENHENFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNLVFSTPTNQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKYDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAVPRTLEQNATMLLHKWQYIADRVHEDLFISPFLYRANSSMVCLFTSLFLGGVDRLLPLMQESFPELGLTKEDCREMSFIESVVYINGFEIREFFKGKADYVMEPIPKEAFEGLYDLFYKEDPRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLYYADWQDATDEASQRHKNMLNKLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGDTSVQEAGVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNLL**EL
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AENHENFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNLVFSTPTNQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKYDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAVPRTLEQNATMLLHKWQYIADRVHEDLFISPFLYRANSSMVCLFTSLFLGGVDRLLPLMQESFPELGLTKEDCREMSFIESVVYINGFEIREFFKGKADYVMEPIPKEAFEGLYDLFYKEDPRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLYYADWQDATDEASQRHKNMLNKLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGDTSVQEAGVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNLLKDEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query466 2.2.26 [Sep-21-2011]
A6P6V9544 Cannabidiolic acid syntha N/A no 0.974 0.834 0.464 1e-119
A6P6W0545 Cannabidiolic acid syntha N/A no 0.980 0.838 0.464 1e-118
A6P6W1545 Cannabidiolic acid syntha N/A no 0.980 0.838 0.464 1e-118
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.976 0.834 0.466 1e-116
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.976 0.834 0.468 1e-115
Q9SVG4570 Reticuline oxidase-like p no no 0.972 0.794 0.403 2e-91
P93479535 Reticuline oxidase OS=Pap N/A no 0.969 0.844 0.377 2e-81
P30986538 Reticuline oxidase OS=Esc N/A no 0.961 0.832 0.381 6e-80
O06997447 Uncharacterized FAD-linke yes no 0.768 0.800 0.267 5e-19
P08159458 6-hydroxy-D-nicotine oxid N/A no 0.806 0.820 0.244 8e-16
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function desciption
 Score =  427 bits (1098), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/517 (46%), Positives = 319/517 (61%), Gaps = 63/517 (12%)

Query: 1   AENHENFLKCLSL---QSDTISKVIYTQNNSSYSSVLKSSIQNLVFSTPTNQKPPFIITP 57
           A   ENFLKC S     + T  K++YTQNN  Y SVL S+I NL F++ T  KP  I+TP
Sbjct: 28  ANPRENFLKCFSQYIPNNATNLKLVYTQNNPLYMSVLNSTIHNLRFTSDTTPKPLVIVTP 87

Query: 58  FHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTA 117
            HVS IQ  I CSKK GLQIR RSGGHD EG+S IS VPF+IVDL N   I ++  ++TA
Sbjct: 88  SHVSHIQGTILCSKKVGLQIRTRSGGHDSEGMSYISQVPFVIVDLRNMRSIKIDVHSQTA 147

Query: 118 WVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY--------- 168
           WV++GAT+G++ Y + EK++N L+   G CP V  GGHF GGGYG L+R Y         
Sbjct: 148 WVEAGATLGEVYYWVNEKNEN-LSLAAGYCPTVCAGGHFGGGGYGPLMRNYGLAADNIID 206

Query: 169 ------------------DLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAVPRTLE- 209
                             DLFWA+RGGG  SFGII++WKI LV VP + T+F+V + +E 
Sbjct: 207 AHLVNVHGKVLDRKSMGEDLFWALRGGGAESFGIIVAWKIRLVAVPKS-TMFSVKKIMEI 265

Query: 210 QNATMLLHKWQYIADRVHEDLFISPFLYRAN---------SSMVCLFTSLFLGGVDRLLP 260
                L++KWQ IA +  +DL +       N         +++   F+S+FLGGVD L+ 
Sbjct: 266 HELVKLVNKWQNIAYKYDKDLLLMTHFITRNITDNQGKNKTAIHTYFSSVFLGGVDSLVD 325

Query: 261 LMQESFPELGLTKEDCREMSFIESVVYING---FEIREF---------------FKGKAD 302
           LM +SFPELG+ K DCR++S+I+++++ +G   ++   F               FK K D
Sbjct: 326 LMNKSFPELGIKKTDCRQLSWIDTIIFYSGVVNYDTDNFNKEILLDRSAGQNGAFKIKLD 385

Query: 303 YVMEPIPKEAFEGLYDLFYKEDPRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLY 362
           YV +PIP+  F  + +  Y+ED    G+   +PYGG M E SES IPFPHRAG +Y L Y
Sbjct: 386 YVKKPIPESVFVQILEKLYEEDIGA-GMYALYPYGGIMDEISESAIPFPHRAGILYELWY 444

Query: 363 YADWQDATDEASQRHKNMLNKLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGDTSVQEA 422
              W+   D  +++H N +  ++N+MTPYV+KNPR AY+NYRDLDIG N+     +  +A
Sbjct: 445 ICSWEKQED--NEKHLNWIRNIYNFMTPYVSKNPRLAYLNYRDLDIGINDPKNPNNYTQA 502

Query: 423 GVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPF 459
            +WG+KYF  NF RLV VKT+VDP NFFRNEQSIPP 
Sbjct: 503 RIWGEKYFGKNFDRLVKVKTLVDPNNFFRNEQSIPPL 539
Catalyzes the stereoselective oxidative cyclization of the monoterpene moiety in cannabigerolic acid (CBGA), producing cannabidiolate (CBDA), the major cannabioid in fiber-type Cannabis plants. Can also use cannabinerolic acid as substrate, but not cannabigerol or cannabinerol.
Cannabis sativa (taxid: 3483)
EC: 1EC: .EC: 2EC: 1EC: .EC: 3EC: .EC: 8
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|P08159|HDNO_ARTOX 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxidans PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query466
224115242527 predicted protein [Populus trichocarpa] 0.982 0.869 0.562 1e-152
224122382534 predicted protein [Populus trichocarpa] 0.980 0.855 0.542 1e-148
224122386533 predicted protein [Populus trichocarpa] 0.974 0.851 0.565 1e-148
224103509531 predicted protein [Populus trichocarpa] 0.980 0.860 0.553 1e-146
224110866533 predicted protein [Populus trichocarpa] 0.978 0.855 0.557 1e-145
224108830533 predicted protein [Populus trichocarpa] 0.978 0.855 0.561 1e-145
224108834533 predicted protein [Populus trichocarpa] 0.974 0.851 0.563 1e-145
224122390501 predicted protein [Populus trichocarpa] 0.967 0.900 0.547 1e-144
224122378535 predicted protein [Populus trichocarpa] 0.976 0.850 0.536 1e-144
359483744538 PREDICTED: LOW QUALITY PROTEIN: reticuli 0.984 0.853 0.556 1e-144
>gi|224115242|ref|XP_002332196.1| predicted protein [Populus trichocarpa] gi|222875303|gb|EEF12434.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 287/510 (56%), Positives = 358/510 (70%), Gaps = 52/510 (10%)

Query: 1   AENHENFLKCLSLQ-SDTISKVIYTQNNSSYSSVLKSSIQNLVFSTPTNQKPPFIITPFH 59
           A  HE+FL+CL  Q S +ISK+IYT  NSSYSS+L+ SIQNL F+T +  KP  I+TP +
Sbjct: 18  AHTHESFLQCLDSQNSHSISKLIYTPINSSYSSILQFSIQNLRFNTSSTPKPLVIVTPTN 77

Query: 60  VSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWV 119
           +S IQAAI CS+K G+QIR+RSGGHD EGLS +S   F+++DLIN   I+VNAE KTAWV
Sbjct: 78  ISHIQAAIICSQKHGMQIRIRSGGHDYEGLSYVSTFSFVVIDLINLRTINVNAENKTAWV 137

Query: 120 QSGATVGQLNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY----------- 168
           QSG T+G++ YRIAEKS+ L AFP   CP V VGGHFSGGGYG L+RKY           
Sbjct: 138 QSGVTIGEVYYRIAEKSRTL-AFPASVCPTVGVGGHFSGGGYGMLMRKYGLAADHIIDAQ 196

Query: 169 ----------------DLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAVPRTLEQNA 212
                           DLFWAIRGGGG +FG++I+WKI LV  P TVTVF V RTLEQNA
Sbjct: 197 LVDVKGRILDRESMGEDLFWAIRGGGGNTFGVVIAWKISLVSAPPTVTVFNVQRTLEQNA 256

Query: 213 TMLLHKWQYIADRVHEDLFISPFLYRANSS--------MVCLFTSLFLGGVDRLLPLMQE 264
           + L+H+WQ++AD++HEDLFI   L R NS+        +   F SLFLGG+DRLLPL+Q+
Sbjct: 257 SKLVHRWQFVADKLHEDLFIRIILNRVNSTEEGKSNTTIQASFNSLFLGGIDRLLPLIQD 316

Query: 265 SFPELGLTKEDCREMSFIESVVYINGF--------------EIREFFKGKADYVMEPIPK 310
           SFPELGL KEDC EMS+I+SV+Y +GF                R  FK K+DYV EPIP+
Sbjct: 317 SFPELGLVKEDCIEMSWIQSVLYFDGFPSNSSLDVLLDRTPSTRRNFKAKSDYVKEPIPE 376

Query: 311 EAFEGLYDLFYKEDPRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLYYADWQDAT 370
              EG+++ F+ +D  T  +L+F PYGGKMSE SES IPFPHRAGNIY + +   W +  
Sbjct: 377 LGLEGIWERFFDKDINT-PILIFSPYGGKMSEISESSIPFPHRAGNIYKIQHLIYWDEEG 435

Query: 371 DEASQRHKNMLNKLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGDTSVQEAGVWGKKYF 430
             A++RH + + +L++Y+ PYV+K PR AY+NYRDLDIG NN  G+TS ++A +WG KYF
Sbjct: 436 IVATKRHISWIRRLYSYLAPYVSKTPRAAYVNYRDLDIGINNHAGNTSYRQASIWGLKYF 495

Query: 431 KNNFYRLVHVKTMVDPENFFRNEQSIPPFN 460
           KNNF RLV VKT VDP NFFRNEQSIPP +
Sbjct: 496 KNNFDRLVRVKTAVDPANFFRNEQSIPPLS 525

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224122382|ref|XP_002330609.1| predicted protein [Populus trichocarpa] gi|222872167|gb|EEF09298.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122386|ref|XP_002330610.1| predicted protein [Populus trichocarpa] gi|222872168|gb|EEF09299.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224103509|ref|XP_002334045.1| predicted protein [Populus trichocarpa] gi|222839749|gb|EEE78072.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224110866|ref|XP_002333020.1| predicted protein [Populus trichocarpa] gi|222834634|gb|EEE73097.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108830|ref|XP_002333338.1| predicted protein [Populus trichocarpa] gi|222836258|gb|EEE74679.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108834|ref|XP_002333339.1| predicted protein [Populus trichocarpa] gi|222836259|gb|EEE74680.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122390|ref|XP_002330611.1| predicted protein [Populus trichocarpa] gi|222872169|gb|EEF09300.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122378|ref|XP_002330608.1| predicted protein [Populus trichocarpa] gi|222872166|gb|EEF09297.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359483744|ref|XP_003633009.1| PREDICTED: LOW QUALITY PROTEIN: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query466
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.624 0.546 0.436 1.4e-101
TAIR|locus:2163411535 AT5G44410 [Arabidopsis thalian 0.630 0.549 0.464 8.6e-100
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.613 0.532 0.454 1.4e-99
TAIR|locus:2163441533 AT5G44440 [Arabidopsis thalian 0.624 0.545 0.453 3.7e-99
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.613 0.528 0.451 6e-97
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.598 0.522 0.466 1.8e-95
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.613 0.539 0.438 6.2e-93
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.611 0.535 0.416 8.9e-92
TAIR|locus:505006170527 AT1G34575 [Arabidopsis thalian 0.607 0.537 0.415 1.9e-89
TAIR|locus:2198000529 AT1G26420 [Arabidopsis thalian 0.622 0.548 0.401 2.4e-89
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 648 (233.2 bits), Expect = 1.4e-101, Sum P(2) = 1.4e-101
 Identities = 134/307 (43%), Positives = 188/307 (61%)

Query:   169 DLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAVPRTLEQNATMLLHKWQYIADRVHE 228
             D FWA             SWKI L++VPSTVTVF V +  EQ+A  ++H+WQ++AD+V +
Sbjct:   228 DFFWAIRGGGGSSFCVVLSWKIGLINVPSTVTVFNVTKFSEQSALKIIHRWQFVADKVSD 287

Query:   229 DLFISPFLYRANSSMVCLFTSLFLGGVDRLLPLMQESFPELGLTKEDCREMSFIESVVY- 287
             DLFI   L R  + +   F  L+LG V  LL ++ + FPELGL ++DC EMS+IESV++ 
Sbjct:   288 DLFIRVMLQRYKNMVRASFPGLYLGSVKNLLKMVNKEFPELGLEEDDCTEMSWIESVIWF 347

Query:   288 -------INGFEIRE----FFKGKADYVMEPIPKEAFEGLYDLFYKEDPRTYGLLVFFPY 336
                    IN    R      FK K+D+V EP+PK A   L+    +E    +  L+F P+
Sbjct:   348 AELGEEPINVLTKRTRASLAFKAKSDFVQEPMPKTAISKLWRRL-QEPEAEHAQLIFTPF 406

Query:   337 GGKMSETSESEIPFPHRAGNIYTLLYYADWQDATDEASQRHKNMLNKLFNYMTPYVAKNP 396
             GGKMSE ++ E PFPHR GNIY + Y   W+    +  +++   + ++++ M+ +VAK+P
Sbjct:   407 GGKMSEIADYETPFPHRKGNIYEIQYLNYWRG---DVKEKYMRWVERVYDDMSEFVAKSP 463

Query:   397 RTAYINYRDLDIGTNNKLGDTSVQEAGVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSI 456
             R AYIN RDLD+G    +  +  +E   WG KYFKNNF RLV VKT VDP +FF +EQSI
Sbjct:   464 RGAYINLRDLDLGMYVGVKRSKYEEGKSWGVKYFKNNFERLVRVKTSVDPSDFFCDEQSI 523

Query:   457 PPFNLLK 463
             PPF  ++
Sbjct:   524 PPFTFVE 530
GO:0003824 "catalytic activity" evidence=IEA
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2163411 AT5G44410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163441 AT5G44440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006170 AT1G34575 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198000 AT1G26420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.202.20.1
hypothetical protein (503 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query466
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 5e-22
pfam0803145 pfam08031, BBE, Berberine and berberine like 1e-17
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 3e-16
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score = 91.5 bits (228), Expect = 5e-22
 Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 14/141 (9%)

Query: 51  PPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-S 109
           P  ++ P    E+ A ++ + ++GL + VR GG  L G + ++    +++DL   + I  
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVLTGG--VVLDLSRLNGILE 58

Query: 110 VNAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKYD 169
           ++ E  TA V++G T+G L   +A K   LL    G+     VGG  +  G G    +Y 
Sbjct: 59  IDPEDGTATVEAGVTLGDLVRALAAK-GLLLGLEPGSGIPGTVGGAIATNGGGYGSERY- 116

Query: 170 LFWAIRGGGGPSFGIIISWKI 190
                    G +   ++S ++
Sbjct: 117 ---------GLTRDNVLSLEV 128

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 466
PLN02441525 cytokinin dehydrogenase 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 99.97
PLN02805555 D-lactate dehydrogenase [cytochrome] 99.96
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 99.96
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.96
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 99.95
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 99.95
PRK11230499 glycolate oxidase subunit GlcD; Provisional 99.95
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.92
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.92
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.91
KOG1231505 consensus Proteins containing the FAD binding doma 99.88
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.87
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.8
PRK11183564 D-lactate dehydrogenase; Provisional 99.79
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.74
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.71
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.67
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.66
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.65
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.6
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.6
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.55
KOG1232511 consensus Proteins containing the FAD binding doma 99.53
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.51
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.29
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.09
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.03
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.03
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 98.83
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 98.45
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 98.11
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 98.02
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 94.23
PRK09799258 putative oxidoreductase; Provisional 93.43
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 92.19
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 91.54
PLN00107257 FAD-dependent oxidoreductase; Provisional 90.72
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 90.7
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 89.8
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 88.79
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 87.44
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 85.99
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 84.17
COG4981 717 Enoyl reductase domain of yeast-type FAS1 [Lipid m 81.46
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=2.1e-32  Score=283.58  Aligned_cols=159  Identities=25%  Similarity=0.329  Sum_probs=138.8

Q ss_pred             ccCCCCCCCCCEEEecCCHHHHHHHHHHHH--hcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcc-------eEEcC
Q 048047           42 VFSTPTNQKPPFIITPFHVSEIQAAIKCSK--KSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSE-------ISVNA  112 (466)
Q Consensus        42 r~~~~~~~~p~~vv~p~~~~dV~~~v~~a~--~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~-------v~~d~  112 (466)
                      .|.......|.+|++|+|++||+++|++|+  ++++++++||||||+.|.+...+  |++|||++||+       +++|.
T Consensus        56 d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~--GivIdms~Ln~i~~~~~ii~vd~  133 (525)
T PLN02441         56 DFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG--GVVVDMRSLRGGVRGPPVIVVSG  133 (525)
T ss_pred             CcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--eEEEECCCCCCcCccCceEEEcC
Confidence            476655668999999999999999999997  67999999999999998887754  99999999999       46889


Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHhCCCceee-cCCCCCCceEeeeccCCCcCCccchh-----------------------
Q 048047          113 EAKTAWVQSGATVGQLNYRIAEKSQNLLAF-PVGTCPGVAVGGHFSGGGYGALLRKY-----------------------  168 (466)
Q Consensus       113 ~~~~~~vg~G~~~~~v~~~l~~~g~~~l~~-~~G~~~~vg~gG~~lgGG~g~~s~~~-----------------------  168 (466)
                      +..+|+||+|++|.+|++++.++|.   +. ..+.+..+++||.+.+||+|..+.+|                       
T Consensus       134 ~~~~VtV~aG~~~~dv~~~l~~~Gl---aP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s  210 (525)
T PLN02441        134 DGPYVDVSGGELWIDVLKATLKHGL---APRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCS  210 (525)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHCCC---ccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeC
Confidence            9999999999999999999999974   33 34666778999999999998888888                       


Q ss_pred             -----hHHHHHhhcCCCceEEEEEEEEEEEecCceeEEEEEec
Q 048047          169 -----DLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAVPR  206 (466)
Q Consensus       169 -----dLfwalrG~g~~~fGvVt~~~~k~~p~~~~~~~~~~~~  206 (466)
                           |||||+|||+ |+|||||++|+|++|.|+......+.+
T Consensus       211 ~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y  252 (525)
T PLN02441        211 PTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLY  252 (525)
T ss_pred             CCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEc
Confidence                 9999999998 899999999999999998654444444

>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query466
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-105
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-88
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 6e-86
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 2e-76
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 2e-76
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 2e-76
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-75
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-74
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 1e-74
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-74
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 2e-09
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 7e-09
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 5e-08
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 2e-07
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 5e-07
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 1e-06
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  380 bits (975), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/517 (41%), Positives = 291/517 (56%), Gaps = 62/517 (11%)
Query: 1   AENHENFLKCLSLQ-SDTIS--KVIYTQNNXXXXXXXXXXIQNLVFSTPTNQKPPFIITP 57
           A   ENFLKC S    + ++  K++YTQ++          IQNL F + T  KP  I+TP
Sbjct: 1   ANPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTP 60
Query: 58  FHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTA 117
            + S IQA I CSKK GLQIR RSGGHD EG+S IS VPF++VDL N   I ++  ++TA
Sbjct: 61  SNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTA 120
Query: 118 WVQSGATVGQLNYRIAEKSQNLLAFPVGTCPXXXXXXXXXXXXXXXLLRKY--------- 168
           WV++GAT+G++ Y I EK++N L+FP G CP               L+R Y         
Sbjct: 121 WVEAGATLGEVYYWINEKNEN-LSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIID 179
Query: 169 ------------------DLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAVPRTLEQ 210
                             DLFWA             +WKI+LV VPS  T+F+V + +E 
Sbjct: 180 AHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEI 239
Query: 211 NATM-LLHKWQYIADRVHEDLFISPFLYRAN---------SSMVCLFTSLFLGGVDRLLP 260
           +  + L +KWQ IA +  +DL +       N         +++   F+S+F GGVD L+ 
Sbjct: 240 HGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVD 299
Query: 261 LMQESFPELGLTKEDCREMSFIESVVYING---FEIREF---------------FKGKAD 302
           LM +SFPELG+ K DC+E S+I++ ++ +G   F    F               F  K D
Sbjct: 300 LMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLD 359
Query: 303 YVMEPIPKEAFEGLYDLFYKEDPRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLY 362
           YV +PIP+ A   + +  Y+ED    G+ V +PYGG M E SES IPFPHRAG +Y L Y
Sbjct: 360 YVKKPIPETAMVKILEKLYEEDVGA-GMYVLYPYGGIMEEISESAIPFPHRAGIMYELWY 418
Query: 363 YADWQDATDEASQRHKNMLNKLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGDTSVQEA 422
            A W+   D  +++H N +  ++N+ TPYV++NPR AY+NYRDLD+G  N     +  +A
Sbjct: 419 TASWEKQED--NEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQA 476
Query: 423 GVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPF 459
            +WG+KYF  NF RLV VKT VDP NFFRNEQSIPP 
Sbjct: 477 RIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query466
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 1e-178
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 1e-177
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-154
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-149
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-148
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-146
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-144
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-144
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-103
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 1e-38
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 2e-28
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 4e-15
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 9e-11
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 5e-09
2i0k_A 561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 1e-07
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
 Score =  507 bits (1306), Expect = e-178
 Identities = 183/497 (36%), Positives = 259/497 (52%), Gaps = 48/497 (9%)

Query: 6   NFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNLVFSTPTNQKPPFIITPFHVSEIQA 65
           + L CL+        V    ++S ++  L  SIQN +F      KP  II P    E+  
Sbjct: 1   DLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSN 60

Query: 66  AIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATV 125
            I+C +K    IR+RSGGH  EGLS  SD PFI++DL+N + +S++ E++TAWV+SG+T+
Sbjct: 61  TIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTL 120

Query: 126 GQLNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY----------------- 168
           G+L Y I E S   L F  G CP V  GGH SGGG+G + RKY                 
Sbjct: 121 GELYYAITESSSK-LGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANG 179

Query: 169 ----------DLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAVPRTLE-QNATMLLH 217
                     D+FWAIRGGGG  +G I +WKI+L+ VP  VTVF V + +    AT LLH
Sbjct: 180 AILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLH 239

Query: 218 KWQYIADRVHEDLFISPFLYRANSSMVCLFTSLFLGGVDRLLPLMQESFPELGLTKEDCR 277
           KWQ++A+ + ED  +S         +         G            FPELGL +ED  
Sbjct: 240 KWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYL 299

Query: 278 EMSFIESVVYINGFEI------------REFFKGKADYVMEPIPKEAFEGLYDLFYKEDP 325
           EMS+ ES  Y+ G E                FK K D   EP+P +AF GL +   KE  
Sbjct: 300 EMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPN 359

Query: 326 RTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLYYADWQDATDEASQRHKNMLNKLF 385
              G +    +GG+MS+ S    PFPHR+G    + Y   W  +  +      + L K++
Sbjct: 360 ---GFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVY 416

Query: 386 NYMTPYVAKNPRTAYINYRDLDIGTNN----KLGDTSVQEAGVWGKKYFKNNFYRLVHVK 441
            +M P+V+KNPR  Y+N+ DLD+G  +     + + +++ +  WG+ YF +N+ RL+  K
Sbjct: 417 EFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAK 476

Query: 442 TMVDPENFFRNEQSIPP 458
           T++DP N F + QSIPP
Sbjct: 477 TLIDPNNVFNHPQSIPP 493
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query466
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 99.97
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 99.96
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 99.95
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 99.95
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 99.94
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.94
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.94
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.91
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.9
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.89
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.89
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.85
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.8
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.77
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.74
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.63
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.43
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 96.25
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 94.42
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 91.92
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 91.57
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 91.53
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 91.12
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 87.22
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 83.6
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 80.61
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=3.6e-84  Score=676.62  Aligned_cols=456  Identities=52%  Similarity=0.947  Sum_probs=391.7

Q ss_pred             CcchhhHHHHHhhcCC---CCCceEEcCCCCCchHHhhhcccccccCCCCCCCCCEEEecCCHHHHHHHHHHHHhcCCcE
Q 048047            1 AENHENFLKCLSLQSD---TISKVIYTQNNSSYSSVLKSSIQNLVFSTPTNQKPPFIITPFHVSEIQAAIKCSKKSGLQI   77 (466)
Q Consensus         1 ~~~~~~~~~~~~~~~~---~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~~dV~~~v~~a~~~~~~~   77 (466)
                      +.++++|.+||+....   .+++.|++|+|+.|++++.++.+|.||+.....+|.+||+|+|++||+++|++|+++++||
T Consensus         1 ~~~~~~f~~c~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v   80 (518)
T 3vte_A            1 ANPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQI   80 (518)
T ss_dssp             CCHHHHHHHHHHHHCCC----CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEE
T ss_pred             CChhHHHHHHHHhcCCccCCCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcE
Confidence            3568899999987543   6789999999999999988889999999888889999999999999999999999999999


Q ss_pred             EEeccccCCCCCcccCCCCeEEEEcCCCcceEEcCCCCEEEEcCCCcHHHHHHHHHHhCCCceeecCCCCCCceEeeecc
Q 048047           78 RVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVAVGGHFS  157 (466)
Q Consensus        78 ~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v~~d~~~~~~~vg~G~~~~~v~~~l~~~g~~~l~~~~G~~~~vg~gG~~l  157 (466)
                      .||||||++.+.+...+.++++|||++||+|++|++.++|+||+|++|++|+++|.++|.+ |++++|.|++||+||+++
T Consensus        81 ~vrggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~g-l~~~~G~~~~vgvgG~~~  159 (518)
T 3vte_A           81 RTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNEN-LSFPGGYCPTVGVGGHFS  159 (518)
T ss_dssp             EEESSCCCTTCTTTCCSSSEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTT-EECCCCSCTTCBHHHHHH
T ss_pred             EEECCCcCCCCCccCCCCCeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCC-ceecCCCCCCeeeeeeeC
Confidence            9999999998877433235999999999999999999999999999999999999999864 899999999999999999


Q ss_pred             CCCcCCccchh---------------------------hHHHHHhhcCCCceEEEEEEEEEEEecCceeEEEEEecchh-
Q 048047          158 GGGYGALLRKY---------------------------DLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAVPRTLE-  209 (466)
Q Consensus       158 gGG~g~~s~~~---------------------------dLfwalrG~g~~~fGvVt~~~~k~~p~~~~~~~~~~~~~~~-  209 (466)
                      |||+|+++++|                           |||||+||||+|+|||||+++||++|.|+.+..+.+.+.++ 
T Consensus       160 gGg~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~  239 (518)
T 3vte_A          160 GGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEI  239 (518)
T ss_dssp             TCCCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCH
T ss_pred             CCCCccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCH
Confidence            99999999988                           99999999855899999999999999998777777776654 


Q ss_pred             hhHHHHHHHHHHHHHhhcccceeEEEEeec---------CCceEEEEEEEEeCCcccchhhhhhcCCcCCCCcCcceecC
Q 048047          210 QNATMLLHKWQYIADRVHEDLFISPFLYRA---------NSSMVCLFTSLFLGGVDRLLPLMQESFPELGLTKEDCREMS  280 (466)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~  280 (466)
                      +++.+++.+|+++.+++|+++++.+.+...         ...+.+.+.++|+|+.+++.+.+++++++++....++.+++
T Consensus       240 ~~~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~  319 (518)
T 3vte_A          240 HGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFS  319 (518)
T ss_dssp             HHHHHHHHHHHHHGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEEC
T ss_pred             HHHHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecc
Confidence            557889999999999999999998876641         12346778899999999998888887888876667788999


Q ss_pred             HHHHHHHhcCCC------------------cccccccccccccCCCCHHHHHHHHHHHhccCCCceeEEEEEecCcccCC
Q 048047          281 FIESVVYINGFE------------------IREFFKGKADYVMEPIPKEAFEGLYDLFYKEDPRTYGLLVFFPYGGKMSE  342 (466)
Q Consensus       281 ~~~~~~~~~~~~------------------~~~~~~~~s~~~~~~l~~~~i~~i~~~~~~~~~~~~~~~~~~~~GG~v~~  342 (466)
                      |.+.+.++..++                  ...+|+.|+.|+.++++++.++.+++.+.+.+.. .+.+.+.++||++++
T Consensus       320 w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~-~~~v~~~~~GGa~~~  398 (518)
T 3vte_A          320 WIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVG-AGMYVLYPYGGIMEE  398 (518)
T ss_dssp             HHHHHHHTSSSCCC-----CGGGGGCTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTT-TEEEEEEECCGGGGT
T ss_pred             hhhhhhhhhcCCccCCccchhhhhccCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCC-CeEEEEeecCccccC
Confidence            999877654321                  1235678999998899999999999988764332 468899999999999


Q ss_pred             CCCCCCCCcccCCceEEEEEEEEeCCCChHhHHHHHHHHHHHHHcccccccCCCCcccccccCCccC-CCCCCCCCchhc
Q 048047          343 TSESEIPFPHRAGNIYTLLYYADWQDATDEASQRHKNMLNKLFNYMTPYVAKNPRTAYINYRDLDIG-TNNKLGDTSVQE  421 (466)
Q Consensus       343 v~~~~tAf~~R~~~~~~v~~~~~W~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~g~Y~Ny~d~~~~-~~~~~~~~~~~~  421 (466)
                      +++++|||+||++..|.+++.+.|.++.  .++++.+|++++++.|.||.+..+.++|+||.|.+++ .+ ..++++++.
T Consensus       399 v~~~~TAf~hR~~~~~~~~~~~~w~~~~--~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~-~~~~~~~~~  475 (518)
T 3vte_A          399 ISESAIPFPHRAGIMYELWYTASWEKQE--DNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTN-HASPNNYTQ  475 (518)
T ss_dssp             SCTTSSSCCCCTTCCEEEEEEEEECCTT--THHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCC-TTSCCCHHH
T ss_pred             CCCCCCcccccCcceEEEEEEEecCCcc--hhHHHHHHHHHHHHHhccccCCCCccccccCCCccccccc-cccccchhh
Confidence            9999999999995489999999997653  5668899999999999998655567999999998875 21 124455666


Q ss_pred             hhhhhhhhccccHHHHHHhhhccCCCCCcccCCCCCCcCC
Q 048047          422 AGVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNL  461 (466)
Q Consensus       422 ~~~~~~~yyg~n~~RL~~IK~kYDP~nvF~~~~~I~~~~~  461 (466)
                      +..|+++|||+||+||++||+||||+|||+++|||+|.+.
T Consensus       476 ~~~w~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~~  515 (518)
T 3vte_A          476 ARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPP  515 (518)
T ss_dssp             HHHHHHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCCT
T ss_pred             hhhHHHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCCC
Confidence            6789999999999999999999999999999999998653
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 466
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 3e-13
d1f0xa2265 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Esche 4e-05
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 1e-04
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 66.5 bits (161), Expect = 3e-13
 Identities = 29/184 (15%), Positives = 54/184 (29%), Gaps = 34/184 (18%)

Query: 43  FSTPTNQKPPFIITPFHVSEIQAAIKC---SKKSGLQIRVRSGGHDLEGLS----SISDV 95
           F   T+  P  ++ P    ++ A +     +      I  R  GH L G +     +   
Sbjct: 22  FGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVN 81

Query: 96  PFIIVDLINFSEISVNAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVAVGGH 155
              + D      I+V+A+ +            +      +     ++       V     
Sbjct: 82  MASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLS 141

Query: 156 FSGGGY---------------------GALLR-----KYDLFWAIRGGGGPSFGIIISWK 189
            +G                        G ++        DLF A+ GG G  FG+I   +
Sbjct: 142 NAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRAR 200

Query: 190 IELV 193
           I + 
Sbjct: 201 IAVE 204
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 265 Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query466
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 99.97
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 99.95
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.92
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.9
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.69
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.6
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.58
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 93.79
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 93.36
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 92.14
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 91.87
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 91.03
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 89.69
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 88.59
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.97  E-value=3.8e-32  Score=250.26  Aligned_cols=148  Identities=20%  Similarity=0.274  Sum_probs=132.5

Q ss_pred             ccCCCCCCCCCEEEecCCHHHHHHHHHHHHhc---CCcEEEeccccCCCCCcccCCCCeEEEEcCCCcce------EEcC
Q 048047           42 VFSTPTNQKPPFIITPFHVSEIQAAIKCSKKS---GLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI------SVNA  112 (466)
Q Consensus        42 r~~~~~~~~p~~vv~p~~~~dV~~~v~~a~~~---~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v------~~d~  112 (466)
                      .|.......|.+||+|+|++||+++|++|+++   ++|+++|||||++.+.+...+  +++|||++||+|      ++|+
T Consensus        21 d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~~--~ividl~~l~~i~~~~~~~id~   98 (206)
T d1w1oa2          21 DFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPG--GVVVNMASLGDAAAPPRINVSA   98 (206)
T ss_dssp             CTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCTT--SEEEEGGGGGCSSSSCSEEECT
T ss_pred             CcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccCC--CEeeeccccceeeeceeEEEec
Confidence            45554556899999999999999999999997   699999999999998877654  899999999985      6999


Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHhCCCceeec-CCCCCCceEeeeccCCCcCCccchh-----------------------
Q 048047          113 EAKTAWVQSGATVGQLNYRIAEKSQNLLAFP-VGTCPGVAVGGHFSGGGYGALLRKY-----------------------  168 (466)
Q Consensus       113 ~~~~~~vg~G~~~~~v~~~l~~~g~~~l~~~-~G~~~~vg~gG~~lgGG~g~~s~~~-----------------------  168 (466)
                      +..+++||+|++|.|++++|.++|   +.++ .+.+..+++||++++||+|..+++|                       
T Consensus        99 ~~~~v~v~aG~~~~~l~~~l~~~G---l~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~~~s  175 (206)
T d1w1oa2          99 DGRYVDAGGEQVWIDVLRASLARG---VAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCS  175 (206)
T ss_dssp             TSSEEEEETTCBHHHHHHHHHTTT---EEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEEEEE
T ss_pred             CCCEEEEEcceehhhhhhhhhccc---cccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEEEEC
Confidence            999999999999999999999998   4454 4556778899999999999999888                       


Q ss_pred             -----hHHHHHhhcCCCceEEEEEEEEEEEec
Q 048047          169 -----DLFWAIRGGGGPSFGIIISWKIELVDV  195 (466)
Q Consensus       169 -----dLfwalrG~g~~~fGvVt~~~~k~~p~  195 (466)
                           |||||+||++ |+|||||++|||++|+
T Consensus       176 ~~~~~dl~~a~~g~~-G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         176 KQLNADLFDAVLGGL-GQFGVITRARIAVEPA  206 (206)
T ss_dssp             SSSSHHHHHHHTTCT-TCSEEEEEEEEEEEEC
T ss_pred             CCCCHHHHHHHhhCC-CccEeEEEEEEEEEcC
Confidence                 9999999999 8999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure