Citrus Sinensis ID: 048063

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480----
Protein Sequence
MNKVCWPYFDPEFDTLPERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEILGPIDLAVKNDSRSTSPSPPDRSPTRFSLGDLLRSQLERLSHNFVPIN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEEccccccEEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEcccccccccHHHHHHHHHHHcccccccccccccccccEEEEcccccccEEEEEEEEEccccHHHHHHHHHHHcccEEEEEEEEEEccEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEccccccEEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEEccEEEEEEEEEccccccccHHHHHHHHHHHcccHHHHcccccccccccccccccccccHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHccccccEEEEEcccccccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHcccccccccHHcccccccEccccccccccEEEEEEccccccHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccHHHcccccccccccEEEEEccccccEEEEEEEccccccHHHHHHHHHHHccEEEEEEEEEcccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEccccccccHHHHHHHHHHHcccEEEEEccccccccccccccccccccHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mnkvcwpyfdpefdtlperiygptcrvcidnesmedctvvKVDSVSKQGLLLEMVQVLTDMNLTISKsyissdagwfmDVFHVkdehgnkltdQKVINYIQQAIgttgeipssavaktytnkavfgseypsehtaiemtgtdrpglfSEISAALADLHCNIVEAHAWSHNDRLACVAYvsdqstdtpiddpgrlATIEEYITTVLRAtaerspsethinplqvkangfpcgdcikTNVERRLHQLMLSVrdfdgqcgpnmsrstpssavgfgdeegmRRTAVYIESCeekgysivsvdckdrprlmfdtvctlTDMQYVVFHAsigchgdyaFQEYFIRHIDgyalntegEKERVIKCLEAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVAtkgeksvnAFYLrdisgnevDMDFVESMKKEIlgpidlavkndsrstspsppdrsptrfsLGDLLRSQLErlshnfvpin
Flexible Loop (DISEMBL)
mnkvcwpyfdpefdtlperiygPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIgttgeipssavAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQstdtpiddpgrLATIEEYITTVLRataerspsethinplqvkangfPCGDCIKTNVERRLHQLMLSVRDfdgqcgpnmsrstpssavgfgdeegMRRTAVYIesceekgysivsvdckdrpRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRahvatkgeksvnafylRDISGNEVDMDFVESMKKEILGPIDLavkndsrstspsppdrsptrfSLGDLLRSqlerlshnfvpin
Low Complexity Region (SEG)
MNKVCWPYFDPEFDTLPERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEILGPIDLAVKNdsrstspsppdrsptrFSLGDLLRSQLERLSHNFVPIN
Disordered region (IsUnstruct)
***VCWPYFDPEFDTLPERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRAT********HINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFD************************RRTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEILGPIDL******************************************
Disordered Region (DISOPRED)
*NKVCWPYFDPEFDTLPERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYI**************************SEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRAT***********PLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSA*****EEGMRRTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEILG*****************************LLRSQLERLSHNFVPIN
Disordered Region (DISEMBL)
MNKVCWPYFDPEFDTLPERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEILGPIDLAVK***************TRFSLGDLLRSQLERLSHNFVPIN
Disordered Region (DISPRO)
**KVCWPYFDPEFDTLPERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTT************TNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRA*****************************N*****HQLMLSVRDFD************************RRTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEILGPIDLAVKND*************TRFSLGDLLRSQLERLSHNFVPIN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNKVCWPYFDPEFDTLPERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEILGPIDLAVKNDSRSTSPSPPDRSPTRFSLGDLLRSQLERLSHNFVPIN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	484	2.2.26 [Sep-21-2011]
Q98C27	933	[Protein-PII] uridylyltra	yes	no	0.181	0.094	0.333	3e-07
Q1QRM1	931	[Protein-PII] uridylyltra	yes	no	0.171	0.089	0.345	6e-07
Q8RQD1	933	[Protein-PII] uridylyltra	yes	no	0.134	0.069	0.337	1e-06
Q2RNG2	936	[Protein-PII] uridylyltra	yes	no	0.227	0.117	0.285	2e-06
Q89VX9	929	[Protein-PII] uridylyltra	yes	no	0.307	0.160	0.244	2e-06
Q3SWE0	925	[Protein-PII] uridylyltra	yes	no	0.196	0.102	0.316	3e-06
P56884	949	[Protein-PII] uridylyltra	yes	no	0.181	0.092	0.319	8e-06
A5ETJ9	931	[Protein-PII] uridylyltra	yes	no	0.289	0.150	0.25	1e-05
A4YKP3	931	[Protein-PII] uridylyltra	yes	no	0.289	0.150	0.25	2e-05
B4RC79	938	[Protein-PII] uridylyltra	yes	no	0.130	0.067	0.333	3e-05

>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain MAFF303099) GN=glnD PE=3 SV=1

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 11/99 (11%)

Query: 111 PSSAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN 170
           P + +  T +N+           + IE+ G DRPGL SEI+  L+DL  +I  AH  +  
Sbjct: 834 PRAEIRNTLSNR----------FSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFG 883

Query: 171 DRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATA 209
           +++    YV+D  T   ID P R+ATI   +   L   A
Sbjct: 884 EKVIDTFYVTDL-TGQKIDSPARIATIRNRLMATLEGIA 921

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Rhizobium loti (strain MAFF303099) (taxid: 266835)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=glnD PE=3 SV=1

 Score = 55.8 bits (133), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 122 KAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSD 181
           K +  +++   HT IE++G DRPGL  +++AA++ L+ NI  AH  +  +R   V YV+D
Sbjct: 838 KVIVNNQWSDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTD 897

Query: 182 QSTDTPIDDPGRLATIEEYITTVL 205
                 I  P R A I+  +  +L
Sbjct: 898 L-LGARITAPTRQAAIKRALIHLL 920

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Nitrobacter hamburgensis (strain X14 / DSM 10229) (taxid: 323097)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense GN=glnD PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 51/86 (59%)

Query: 19  RIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFM 78
           R++    RV IDN +    TV++V+   + GLL ++ + LT++ L IS + IS+     +
Sbjct: 839 RVFHVPPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAI 898

Query: 79  DVFHVKDEHGNKLTDQKVINYIQQAI 104
           DVF+VKD  G K+T +  +  I++ +
Sbjct: 899 DVFYVKDVFGLKVTHENKLAQIRERL 924

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Azospirillum brasilense (taxid: 192)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 9/119 (7%)

Query: 16  LPERIYGPTC--RVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSD 73
           LPER    T   RV +DN++ +  TV++++   + G L  + + LTD+ + IS + +S+ 
Sbjct: 815 LPERTRHLTVPPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTY 874

Query: 74  AGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAKTYTNKAVFGSEYPSE 132
               +D F+VKD  G K+  +  +  I++A+        +A+ +T   K   G+E  +E
Sbjct: 875 GERVVDSFYVKDVFGMKIVHRAKLAQIREAL-------EAAITQTVPRKVEEGAEQGAE 926

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum (strain USDA 110) GN=glnD PE=3 SV=2

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 19/168 (11%)

Query: 62  NLTISKSYISSDAGWFMDVFHVKDEH------GNKLTDQKVINYIQQAIGTTGEIPSSAV 115
           N+  ++ Y ++D G  +D   +  E+      G + T  ++   I+  +     +P    
Sbjct: 765 NIVDAQIYTTTD-GRALDTISISREYDRDEDEGRRAT--RIGEMIEDVLEGKLRLPEVVA 821

Query: 116 AKTYTNKA---------VFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHA 166
            +T  +KA            +++   +T IE++G DRPGL  E++ A++ L+ NI  AH 
Sbjct: 822 RRTVRSKARPFVIEPEVTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHV 881

Query: 167 WSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATAERSPS 214
            +  +R   V YV+D      I+ P R + I+  +T V+       P+
Sbjct: 882 ATFGERARDVFYVTDL-LGAQINAPTRQSAIKSALTHVMAGDKAVQPA 928

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1

 Score = 53.5 bits (127), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 110 IPSSAVAK-----TYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEA 164
           +PS A  K         K    +++   HT IE++G DRPGL  +++ A++ L+ NI  A
Sbjct: 819 MPSRAAGKRLRPFVVEPKVTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASA 878

Query: 165 HAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL 205
           H  +  +R   V YV+D      I  P R A I+  +  +L
Sbjct: 879 HVATFGERARDVFYVTDL-LGARITAPTRQAAIKRALVHLL 918

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) (taxid: 323098)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain 1021) GN=glnD PE=3 SV=1

 Score = 52.4 bits (124), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 6/94 (6%)

Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEV-----DMD 427
           +E+   +R GLLS++T VL +  L +  AH+ T GEK ++ FY+ D+ G+++      M+
Sbjct: 846 IEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKITSENRQMN 905

Query: 428 FVESMKKEILGPIDLAV-KNDSRSTSPSPPDRSP 460
               +K  + G +D A  +  S   +P+P  R P
Sbjct: 906 IAARLKAVLAGEVDEARERMPSGIIAPTPVSRVP 939

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium meliloti (strain 1021) (taxid: 266834)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 20/160 (12%)

Query: 62  NLTISKSYISSDAGWFMDVFHVKDEH------GNKLTDQKVINYIQQAIGTTGEIPSSAV 115
           N+  ++ Y ++D G  +D   +  E+      G + T  ++   I+Q +     +P +  
Sbjct: 765 NIVDAQIYTTTD-GRALDTIAISREYERDEDEGRRAT--RIGETIEQVLEGKLRLPDAVA 821

Query: 116 AKTYTNK----------AVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAH 165
            +T   K              +++   +T IE++G DRPGL  E++ A++ L+ NI  AH
Sbjct: 822 RRTTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAH 881

Query: 166 AWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL 205
             +  +R   V YV+D      I+ P R A I+  +  +L
Sbjct: 882 VATFGERARDVFYVTDL-LGAQINAPTRQAAIKSALLHLL 920

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) (taxid: 288000)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain ORS278) GN=glnD PE=3 SV=1

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 20/160 (12%)

Query: 62  NLTISKSYISSDAGWFMDVFHVKDEH------GNKLTDQKVINYIQQAIGTTGEIPSSAV 115
           N+  ++ Y ++D G  +D   +  E+      G + T  ++   I+Q +     +P +  
Sbjct: 765 NIVDAQIYTTTD-GRALDTIAISREYERDEDEGRRAT--RIGETIEQVLEGKLRLPDAVA 821

Query: 116 AKTYTNK----------AVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAH 165
            +T   K              +++   +T IE++G DRPGL  E++ A++ L+ NI  AH
Sbjct: 822 RRTTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAH 881

Query: 166 AWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL 205
             +  +R   V YV+D      I+ P R A I+  +  +L
Sbjct: 882 VATFGERARDVFYVTDL-LGAQINAPTRQAAIKSALLHLL 920

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Bradyrhizobium sp. (strain ORS278) (taxid: 114615)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|B4RC79|GLND_PHEZH [Protein-PII] uridylyltransferase OS=Phenylobacterium zucineum (strain HLK1) GN=glnD PE=3 SV=1

 Score = 50.4 bits (119), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%)

Query: 21  YGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDV 80
           +  T  V +DNE+ E  TVV+     + GLL  + + ++D  L+I  ++I       +D 
Sbjct: 827 FAITPAVMLDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHIDGYGERAVDA 886

Query: 81  FHVKDEHGNKLTDQKVIN 98
           F+V D  G KLTD +  N
Sbjct: 887 FYVVDADGRKLTDARKRN 904

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Phenylobacterium zucineum (strain HLK1) (taxid: 450851)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	484
255548868	478	amino acid binding protein, putative [Ri	0.975	0.987	0.737	0.0
109676322	2224	unknown [Populus trichocarpa]	0.979	0.213	0.697	0.0
449437402	469	PREDICTED: uncharacterized protein LOC10	0.962	0.993	0.696	0.0
359476144	481	PREDICTED: uncharacterized protein LOC10	0.973	0.979	0.676	0.0
296082058	495	unnamed protein product [Vitis vinifera]	0.966	0.945	0.667	0.0
15239390	500	ACT domain-containing protein [Arabidops	0.991	0.96	0.65	0.0
356554239	483	PREDICTED: uncharacterized protein LOC10	0.958	0.960	0.665	0.0
297812735	502	ACT domain-containing protein [Arabidops	0.993	0.958	0.654	0.0
224141917	439	predicted protein [Populus trichocarpa]	0.896	0.988	0.699	1e-175
294460934	454	unknown [Picea sitchensis]	0.925	0.986	0.561	1e-146

>gi|255548868|ref|XP_002515490.1| amino acid binding protein, putative [Ricinus communis] gi|223545434|gb|EEF46939.1| amino acid binding protein, putative [Ricinus communis]

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/488 (73%), Positives = 405/488 (82%), Gaps = 16/488 (3%)

Query: 1   MNKVCWPYFDPEFDTLPERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTD 60
           M KVCWPYFDP+FD LPERIYGPTCRVCIDNESMEDC+VVKVDSV+KQGLLLE+VQVLTD
Sbjct: 1   MQKVCWPYFDPDFDRLPERIYGPTCRVCIDNESMEDCSVVKVDSVNKQGLLLEVVQVLTD 60

Query: 61  MNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAKTYT 120
           +NLTISKSYISSDAGWFMDVFHVKDE G KLTDQ VI+YI QAIGTT E  S A  K+Y 
Sbjct: 61  LNLTISKSYISSDAGWFMDVFHVKDERGKKLTDQHVIDYIHQAIGTTRETQSPATPKSYV 120

Query: 121 NKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVS 180
           N  VF  E+ SEHTAIEM+GTDRPGLFSEISAAL DLHCNIVEAHAWSHN RLACVAY+S
Sbjct: 121 ND-VFEGEHSSEHTAIEMSGTDRPGLFSEISAALVDLHCNIVEAHAWSHNARLACVAYIS 179

Query: 181 DQSTDTPIDDPGRLATIEEYITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVER 240
           DQSTDTPIDDP RLATIE+++TTV+RAT  +  S+      +VK  G   G+   TNVER
Sbjct: 180 DQSTDTPIDDPHRLATIEDHLTTVIRATGPQPNSQ------EVKTGGVVGGEGTVTNVER 233

Query: 241 RLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFG----DEEGMRRTAVYIESCEEKGYSIVS 296
           RLHQLMLS RDFDG  G +++ S P S  G G    +E+  R+T V I++CEEKGYSIVS
Sbjct: 234 RLHQLMLSARDFDGPLGSSITGSGPRSGRGSGSGLDNEDEGRKTVVSIDNCEEKGYSIVS 293

Query: 297 VDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGD-YAFQEYFIRHIDGYALNTEGEKERV 355
           ++CKDRPRLMFDTVCTLTDMQYV+FHASIG   D YAFQEYFIR+IDGYALNTE EKERV
Sbjct: 294 IECKDRPRLMFDTVCTLTDMQYVIFHASIGAGDDGYAFQEYFIRYIDGYALNTESEKERV 353

Query: 356 IKCLEAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFY 415
           IKCLEAAIERRVCEGV++ELCA NRVGLLSDITRVLRENGL VVRA VAT+GEK+VNAFY
Sbjct: 354 IKCLEAAIERRVCEGVKVELCAENRVGLLSDITRVLRENGLTVVRADVATQGEKAVNAFY 413

Query: 416 LRDISGNEVDMDFVESMKKEILGPIDLAVKNDSRSTSPSPPDRSPTRFSLGDLLRSQLER 475
           +RDISGNEVDM FV+SMKKE +G I+L VK D   + P   D+   RFS+GD+L+SQ+ R
Sbjct: 414 VRDISGNEVDMGFVKSMKKE-MGAINLEVKKD--ISRPISRDQR-ARFSIGDMLKSQIGR 469

Query: 476 LSHNFVPI 483
            SHNF+ I
Sbjct: 470 FSHNFIQI 477

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109676322|gb|ABG37643.1| unknown [Populus trichocarpa]

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/496 (69%), Positives = 397/496 (80%), Gaps = 22/496 (4%)

Query: 1    MNKVCWPYFDPEFDTLPERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTD 60
            M  VCWPYFDP+FD+LPERI+GPTCRVCIDNESMEDCTVVKVDSV+KQGLLLE+VQVLTD
Sbjct: 1739 MKNVCWPYFDPDFDSLPERIFGPTCRVCIDNESMEDCTVVKVDSVNKQGLLLEVVQVLTD 1798

Query: 61   MNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGE-IPSSAVAKTY 119
            +NLTI+K YISSDAGWFMDVFHVKDEHG KL DQ VINYIQQAIGTT E  PS   A+ Y
Sbjct: 1799 LNLTIAKGYISSDAGWFMDVFHVKDEHGKKLRDQNVINYIQQAIGTTRESTPSPPNARAY 1858

Query: 120  TNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYV 179
            TN  +F +++ SEHTAIEM+GTDRPGLFSEISAALADL CNIVE HAWSHN RLACVAY+
Sbjct: 1859 TNN-IFEADHSSEHTAIEMSGTDRPGLFSEISAALADLQCNIVEVHAWSHNARLACVAYI 1917

Query: 180  SDQSTDTPIDDPGRLATIEEYITTVLRATAERSPSE-THINPLQVKANGFPCGDCIKTNV 238
            SD S+ TPI+DP RLA+IE+++TTVLRA   RS  E + IN  +VK  GF  G+   +NV
Sbjct: 1918 SDPSSHTPIEDPHRLASIEDHLTTVLRANTVRSAGEPSQINNREVKTGGFLGGEGTVSNV 1977

Query: 239  ERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYIESCEEKGYSIVSVD 298
            ERRLHQLMLSVRDFDG        S+ S+  G  + +G  +  V IE+C++K YSIV+++
Sbjct: 1978 ERRLHQLMLSVRDFDGPI------SSSSTGTGLNNNKGGSKMVVSIENCDQKEYSIVNIE 2031

Query: 299  CKDRPRLMFDTVCTLTDMQYVVFHASIGC-HGDYAFQEYFIRHIDGYALNTEGEKERVIK 357
            CKDR RLMFDT+CTL DMQYV+FHAS+   H   AFQEYFIRH DGYA NTE EKERVIK
Sbjct: 2032 CKDRRRLMFDTICTLNDMQYVIFHASVSSDHDGRAFQEYFIRHKDGYARNTESEKERVIK 2091

Query: 358  CLEAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLR 417
            CLEAAIERRV EGV L+L A NR+GLLSDITRVLRENGLAVVRA VAT+GEK+VNAFY+R
Sbjct: 2092 CLEAAIERRVSEGVLLKLRAENRLGLLSDITRVLRENGLAVVRADVATEGEKAVNAFYVR 2151

Query: 418  DISGNEVDMDFVESMKKEILGPIDLAV-KNDSRS--------TSPSPPDRSPTRFSLGDL 468
            DISGNEVDM F++SMKKE +G  DL V KND+          T+ SP +R   RFS GDL
Sbjct: 2152 DISGNEVDMGFIKSMKKE-MGLTDLEVIKNDTSPTTSPTRTITNISPHERH--RFSFGDL 2208

Query: 469  LRSQLERLSHNFVPIN 484
            L+SQ+ER SHNFV IN
Sbjct: 2209 LKSQIERFSHNFVAIN 2224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437402|ref|XP_004136481.1| PREDICTED: uncharacterized protein LOC101219701 [Cucumis sativus] gi|449525060|ref|XP_004169538.1| PREDICTED: uncharacterized LOC101219701 [Cucumis sativus]

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/484 (69%), Positives = 397/484 (82%), Gaps = 18/484 (3%)

Query: 1   MNKVCWPYFDPEFDTLPERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTD 60
           M  VCWPYFDP+FDTLPERI GPTCRVCIDNESMEDCT+VKVDS++KQGLLLE+VQ+LTD
Sbjct: 1   MKNVCWPYFDPDFDTLPERINGPTCRVCIDNESMEDCTIVKVDSLNKQGLLLEVVQILTD 60

Query: 61  MNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAKTYT 120
           +NL+ISKSYIS DAGWFMDVFHVKDE+ +KLTDQKVIN IQQAIGTT    +SA  + Y 
Sbjct: 61  LNLSISKSYISCDAGWFMDVFHVKDENSHKLTDQKVINSIQQAIGTTKGPDNSAKTRRYV 120

Query: 121 NKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVS 180
           NK +  S+   EHTAIEMTGTDRPGLFSEISAALADLHCN+VEAHAWSHN RLAC+AY+S
Sbjct: 121 NK-LLNSDNSGEHTAIEMTGTDRPGLFSEISAALADLHCNVVEAHAWSHNARLACIAYIS 179

Query: 181 DQSTDTPIDDPGRLATIEEYITTVLRA-TAERSPSETHINPLQVKANGFPCGDCIKTNVE 239
           DQSTD+PI+DP RLA IEE+++TVLRA TA    S TH    +VK +       I TNVE
Sbjct: 180 DQSTDSPIEDPHRLANIEEHLSTVLRAATAPPIASWTHTLQQEVKISA-----TITTNVE 234

Query: 240 RRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYIESCEEKGYSIVSVDC 299
           RRLHQL++SV+D+D     ++SR           +E  R+T V IESC++KGYSIVS++C
Sbjct: 235 RRLHQLLVSVKDYDWT-SESISRRPKR-------KEEWRKTTVSIESCDQKGYSIVSIEC 286

Query: 300 KDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCL 359
           KDRPRLMFDTVCTLTDMQYV+FHASI    D AFQEYFIRH++GYALN++ +K RV+KCL
Sbjct: 287 KDRPRLMFDTVCTLTDMQYVIFHASISSKKDNAFQEYFIRHVNGYALNSDYDKHRVVKCL 346

Query: 360 EAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDI 419
           EAAIERRVCEGVRLELCA NRVGLLSDITRVLRENGL VVRA +AT+GEK++NAFY++DI
Sbjct: 347 EAAIERRVCEGVRLELCANNRVGLLSDITRVLRENGLNVVRADIATQGEKAINAFYVKDI 406

Query: 420 SGNEVDMDFVESMKKEILGPIDLAVKNDSRSTSPSPPDRSPTRFSLGDLLRSQLERLSHN 479
           SG EVDM+ VES+KKEI GP+ L VKN+  ++ PS P  + +RFS  D+L+SQLERLSHN
Sbjct: 407 SGKEVDMEMVESVKKEI-GPVVLRVKNE--TSPPSTPQITRSRFSFSDMLKSQLERLSHN 463

Query: 480 FVPI 483
           F+ I
Sbjct: 464 FIAI 467

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476144|ref|XP_003631797.1| PREDICTED: uncharacterized protein LOC100852414 [Vitis vinifera]

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/491 (67%), Positives = 388/491 (79%), Gaps = 20/491 (4%)

Query: 1   MNKVCWPYFDPEFDTLPERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTD 60
           MNKVC PYFDPEFD LPERI+GPTCRVCIDNES+EDCT+VKV+S++KQG+LLE+V+VLTD
Sbjct: 1   MNKVCSPYFDPEFDELPERIFGPTCRVCIDNESLEDCTLVKVNSINKQGILLEVVKVLTD 60

Query: 61  MNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAKTYT 120
           MNLTISKSYISSDAGWFM VFHV+DEHGNKLTDQ+VINYIQQAIGTT EIP+S    TY 
Sbjct: 61  MNLTISKSYISSDAGWFMFVFHVRDEHGNKLTDQRVINYIQQAIGTTREIPNSL---TYV 117

Query: 121 NKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVS 180
           N  V  SE  SEHTAIEM+G DRPGLFSEISAALADL  NIVEAHAW+HN+RLACVAY++
Sbjct: 118 NN-VIESEPASEHTAIEMSGADRPGLFSEISAALADLQVNIVEAHAWTHNERLACVAYIT 176

Query: 181 DQSTDTPIDDPGRLATIEEYITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVER 240
           DQSTD+ I+DP RLA IE ++ TVL A      + +  N  +VK      G+   T  ER
Sbjct: 177 DQSTDSRIEDPHRLAKIENHLATVLGAA-----NISRANHQEVKGADLHVGEATTTCAER 231

Query: 241 RLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYIESCEEKGYSIVSVDCK 300
           RLHQLMLSV DF+G   P  S S     +   D+EG  +T V IESC E+GYSIVS++CK
Sbjct: 232 RLHQLMLSVEDFEGPSAPTTSSSETPLGLDEDDDEG-SKTIVSIESCNERGYSIVSIECK 290

Query: 301 DRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLE 360
           DR RLMFD VCT+TDMQY++FH S   HG YA QEYFIRHIDG  +N+EGEKE V+KCLE
Sbjct: 291 DRLRLMFDVVCTITDMQYLIFHGSTASHGGYAMQEYFIRHIDGCTVNSEGEKEHVVKCLE 350

Query: 361 AAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDIS 420
           AAIERRVCEGVRLELCA NR+GLLSDITRVLRENGLAVVRA V T+GEK+VNAFY++D+S
Sbjct: 351 AAIERRVCEGVRLELCANNRLGLLSDITRVLRENGLAVVRADVETQGEKAVNAFYVKDLS 410

Query: 421 GNEVDMDFVESMKKEI--------LGPIDLAVKNDSRSTSPSPPDRSPTRFSLGDLLRSQ 472
           GN+VD +F E  KKE         +GPIDLAVK +  S SPS PD  P RFS+ D+++S 
Sbjct: 411 GNDVDTEFTEPKKKEKFIESVKKEMGPIDLAVKKEITS-SPSSPDHRP-RFSVADMVKSH 468

Query: 473 LERLSHNFVPI 483
           ++RLS+NF+PI
Sbjct: 469 VDRLSNNFIPI 479

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082058|emb|CBI21063.3| unnamed protein product [Vitis vinifera]

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/490 (66%), Positives = 385/490 (78%), Gaps = 22/490 (4%)

Query: 1   MNKVCWPYFDPEFDTLPERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTD 60
           MNKVC PYFDPEFD LPERI+GPTCRVCIDNES+EDCT+VKV+S++KQG+LLE+V+VLTD
Sbjct: 4   MNKVCSPYFDPEFDELPERIFGPTCRVCIDNESLEDCTLVKVNSINKQGILLEVVKVLTD 63

Query: 61  MNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAKTYT 120
           MNLTISKSYISSDAGWFM VFHV+DEHGNKLTDQ+VINYIQQAIGTT EIP+S    TY 
Sbjct: 64  MNLTISKSYISSDAGWFMFVFHVRDEHGNKLTDQRVINYIQQAIGTTREIPNSL---TYV 120

Query: 121 NKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVS 180
           N  V  SE  SEHTAIEM+G DRPGLFSEISAALADL  NIVEAHAW+HN+RLACVAY++
Sbjct: 121 NN-VIESEPASEHTAIEMSGADRPGLFSEISAALADLQVNIVEAHAWTHNERLACVAYIT 179

Query: 181 DQSTDTPIDDPGRLATIEEYITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVER 240
           DQSTD+ I+DP RLA IE ++ TVL A      + +  N  +VK      G+   T  ER
Sbjct: 180 DQSTDSRIEDPHRLAKIENHLATVLGAA-----NISRANHQEVKGADLHVGEATTTCAER 234

Query: 241 RLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYIESCEEKGYSIVSVDCK 300
           RLHQLMLSV DF+G   P  S S     +   D+EG  +T V IESC E+GYSIVS++CK
Sbjct: 235 RLHQLMLSVEDFEGPSAPTTSSSETPLGLDEDDDEG-SKTIVSIESCNERGYSIVSIECK 293

Query: 301 DRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLE 360
           DR RLMFD VCT+TDMQY++FH S   HG YA QEYFIRHIDG  +N+EGEKE V+KCLE
Sbjct: 294 DRLRLMFDVVCTITDMQYLIFHGSTASHGGYAMQEYFIRHIDGCTVNSEGEKEHVVKCLE 353

Query: 361 AAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDIS 420
           AAIERRVCEGVRLELCA NR+GLLSDITRVLRENGLAVVRA V T+GEK+VNAFY++D+S
Sbjct: 354 AAIERRVCEGVRLELCANNRLGLLSDITRVLRENGLAVVRADVETQGEKAVNAFYVKDLS 413

Query: 421 GNEVDMD---------FVESMKKEILGPIDLAVKNDSRSTSPSPPDRSPTRFSLGDLLRS 471
           GN+VD +         F+ES+KKE +GPIDLAVK +  S SPS PD  P RFS+ D+++S
Sbjct: 414 GNDVDTEFTEPKKKEKFIESVKKE-MGPIDLAVKKEITS-SPSSPDHRP-RFSVADMVKS 470

Query: 472 QLERLSHNFV 481
            +  + +N +
Sbjct: 471 HVVNMKNNII 480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239390|ref|NP_197914.1| ACT domain-containing protein [Arabidopsis thaliana] gi|332006043|gb|AED93426.1| ACT domain-containing protein [Arabidopsis thaliana]

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/500 (65%), Positives = 389/500 (77%), Gaps = 20/500 (4%)

Query: 1   MNKVCWPYFDPEFDTLPERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTD 60
           M KVCWPYFDP+FD L ERIYGP CRV IDN+S++DCTVVKV+S +KQGLLLE+VQ+LTD
Sbjct: 1   MQKVCWPYFDPDFDNLGERIYGPPCRVYIDNDSIQDCTVVKVNSENKQGLLLEVVQILTD 60

Query: 61  MNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAKTYT 120
           MNL I+KSYISSD GWFMDVFHVKDEHGNKLTD+ VIN+I+ AIGT+    S  +  +  
Sbjct: 61  MNLIITKSYISSDGGWFMDVFHVKDEHGNKLTDKSVINHIKHAIGTSRR-ESDFIKASEA 119

Query: 121 NKAVFGSEYP--SEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAY 178
           N      +     EHTAIEMTGTDRPGLFSEI AA ADLHCN++EAHAWSHN RLAC+AY
Sbjct: 120 NNNSLEPQLADHGEHTAIEMTGTDRPGLFSEIFAAFADLHCNVMEAHAWSHNARLACIAY 179

Query: 179 VSDQSTDTPIDDPGRLATIEEYITTVLRATAERSPSETHINPLQVKANGFPCGD---CIK 235
           VSD +T TPIDDP RLA+IE++++TV+RATA+ + + TH+   + + +GF  G    C+ 
Sbjct: 180 VSDDNTHTPIDDPSRLASIEDHLSTVIRATADPASNSTHVGHKENETDGFLAGQGKGCMN 239

Query: 236 TNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYIESCEEKGYSIV 295
           +N+ERRLHQLMLSVRDFD       S S  SS + + D +  + T V I +CEE+GYSIV
Sbjct: 240 SNMERRLHQLMLSVRDFDEPFCEPSSLSLLSSKLEYCDHKERKTTIVSIGNCEERGYSIV 299

Query: 296 SVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERV 355
           +V  KDR RLMFDT+CTL DMQYV+FHA++   G  AFQEYFIRHIDG ALNTEGEKERV
Sbjct: 300 TVKSKDRRRLMFDTICTLVDMQYVIFHAALRSDGADAFQEYFIRHIDGRALNTEGEKERV 359

Query: 356 IKCLEAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFY 415
           IKCLEAAIERRVCEGV+LELCA NRVGLLSDITRVLRENGL VVRA V T+G+KS+NAFY
Sbjct: 360 IKCLEAAIERRVCEGVKLELCAENRVGLLSDITRVLRENGLTVVRADVETQGQKSLNAFY 419

Query: 416 LRDISGNEVDMDFVESMKKEILGPIDLAVKNDS-----------RSTSPSPPDRSPT--R 462
           +RDISGN++DM+FVES+KKE + PI L VKN+             +++ + P R P   R
Sbjct: 420 VRDISGNKIDMEFVESVKKE-MRPIHLEVKNEDTKIDTVGSDEPTASASATPQRQPQPHR 478

Query: 463 FSLGDLLRSQLERLSHNFVP 482
           FSLGD+LRSQ+ERLS NFVP
Sbjct: 479 FSLGDILRSQMERLSLNFVP 498

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554239|ref|XP_003545456.1| PREDICTED: uncharacterized protein LOC100820595 [Glycine max]

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/499 (66%), Positives = 381/499 (76%), Gaps = 35/499 (7%)

Query: 1   MNKVCWPYFDPEFDTLPERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTD 60
           MN VC PYFDPEFDTLPERI+GP CRVC+DNESME CTVVKVDSV+KQGLLLE+VQ+LTD
Sbjct: 1   MNSVCMPYFDPEFDTLPERIHGPPCRVCVDNESMEGCTVVKVDSVNKQGLLLEVVQILTD 60

Query: 61  MNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTT-GEIPSS------ 113
           MNL I KS+ISSDAGWFMDVFHV+DE+GNKLTDQKVIN IQQAIG +    PS       
Sbjct: 61  MNLQICKSFISSDAGWFMDVFHVRDENGNKLTDQKVINDIQQAIGRSRASSPSQQHSNNN 120

Query: 114 ---AVAKTYTNKAVFGSEY------PS-EHTAIEMTGTDRPGLFSEISAALADLHCNIVE 163
              +V  T TN   +          P+ +HTAIEMTG DRPGLFSEISAALADLHCNIVE
Sbjct: 121 NNNSVFTTMTNYKTYSKRLLPLLPNPNDQHTAIEMTGADRPGLFSEISAALADLHCNIVE 180

Query: 164 AHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATAERSPSETHINPLQV 223
           AHAWSHN RLACVAY+SDQSTDT IDDP RLA+IE+++TTVLRAT   +      +P  V
Sbjct: 181 AHAWSHNARLACVAYISDQSTDTAIDDPSRLASIEDHLTTVLRATTNPNGGGGANHP-DV 239

Query: 224 KANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVY 283
           K +    G+   T VERRLHQLMLSVRDF+          TPSS      E+  R+  V 
Sbjct: 240 KTSELLGGEGQMTTVERRLHQLMLSVRDFE----------TPSSP----KEKKGRKRMVS 285

Query: 284 IESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDG 343
           +ESCE+KGYSIVS++CKDRPRLMFDTVCTLTDMQYV+FHASI  H  YA QEYFIRH+DG
Sbjct: 286 VESCEQKGYSIVSIECKDRPRLMFDTVCTLTDMQYVIFHASITSHAGYACQEYFIRHVDG 345

Query: 344 YALNTEGEKERVIKCLEAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHV 403
            AL+T  EKERV+KCLEAAIERRVCEG+RLELCA NRVGLLSDITRVLRENGL VVRA V
Sbjct: 346 CALDTASEKERVMKCLEAAIERRVCEGIRLELCADNRVGLLSDITRVLRENGLVVVRADV 405

Query: 404 ATKGEKSVNAFYLRDISGNEVDMDFVESMKKEILGPI-DLAVKNDSRSTSPSPPDRSPTR 462
            T GEKSVNAFY+RDISGNEVD+++  +  K+ +GPI  L VKND+    P+ P ++P  
Sbjct: 406 ETHGEKSVNAFYVRDISGNEVDIEYFSNSVKKEMGPIATLHVKNDTNRRKPNSPKQAP-- 463

Query: 463 FSLGDLLRSQLERLSHNFV 481
            S G +LRS++ER SH F+
Sbjct: 464 LSFGGMLRSRIERFSHGFI 482

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812735|ref|XP_002874251.1| ACT domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297320088|gb|EFH50510.1| ACT domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/501 (65%), Positives = 391/501 (78%), Gaps = 20/501 (3%)

Query: 1   MNKVCWPYFDPEFDTLPERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTD 60
           M KVCWPYFDP+FD L ERIYGP CRV IDN+S+ DCTVVKV+S +KQGLLLE+VQ+LTD
Sbjct: 1   MQKVCWPYFDPDFDNLGERIYGPPCRVYIDNDSIIDCTVVKVNSENKQGLLLEVVQILTD 60

Query: 61  MNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTG-EIPSSAVAKTY 119
           MNL I+KSYISSD GWFMDVFHVKDE+GNKLTD+ VIN+I+ AIGT+  E      ++ +
Sbjct: 61  MNLIITKSYISSDGGWFMDVFHVKDEYGNKLTDKSVINHIKHAIGTSRRESDFIKASEAH 120

Query: 120 TNKAVFGSEYP----SEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLAC 175
            N      E P     EHTAIEMTGTDRPGLFSEI AA ADLHCN++EAHAWSHN RLAC
Sbjct: 121 NNPNNNSLESPLSDHGEHTAIEMTGTDRPGLFSEIFAAFADLHCNVMEAHAWSHNARLAC 180

Query: 176 VAYVSDQSTDTPIDDPGRLATIEEYITTVLRATAERSPSETHINPLQVKANGFPCGD--- 232
           +AYVSD +T TPIDDP RLA+IE++++TV+RAT++ + + TH+   + + +GF  G    
Sbjct: 181 IAYVSDDNTHTPIDDPSRLASIEDHLSTVIRATSDPASNSTHVGHKENETDGFLAGQGKG 240

Query: 233 CIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYIESCEEKGY 292
           C+ +NVERRLHQLMLSVRDFD       S S  SS + + D++  + T V I +CEE+GY
Sbjct: 241 CMNSNVERRLHQLMLSVRDFDEPFCEPSSLSLLSSKLEYCDQKERKTTIVSIGNCEERGY 300

Query: 293 SIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEK 352
           SIV+V  KDR RLMFDT+CTL DMQYV+FHA++   G  AFQEYFIRHIDG ALNTEGEK
Sbjct: 301 SIVTVKSKDRRRLMFDTICTLVDMQYVIFHAALRSDGADAFQEYFIRHIDGRALNTEGEK 360

Query: 353 ERVIKCLEAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVN 412
           ERVIKCLEAAIERRVCEGV+LELCA NRVGLLSDITRVLRENGL VVRA V T+G+KS+N
Sbjct: 361 ERVIKCLEAAIERRVCEGVKLELCAENRVGLLSDITRVLRENGLTVVRADVETQGQKSLN 420

Query: 413 AFYLRDISGNEVDMDFVESMKKEILGPIDLAVKNDSRST----------SPSP-PDRSPT 461
           AFY+RDISGN++DM+FVES+KKE + PI L VKN+  +T          S +P P   P 
Sbjct: 421 AFYVRDISGNKIDMEFVESVKKE-MRPIHLEVKNEDTTTDIVGSDDPPASAAPQPQPQPH 479

Query: 462 RFSLGDLLRSQLERLSHNFVP 482
           RFSLGD+LRSQ+ERLS NFVP
Sbjct: 480 RFSLGDILRSQIERLSLNFVP 500

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141917|ref|XP_002324307.1| predicted protein [Populus trichocarpa] gi|222865741|gb|EEF02872.1| predicted protein [Populus trichocarpa]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 312/446 (69%), Positives = 358/446 (80%), Gaps = 12/446 (2%)

Query: 1   MNKVCWPYFDPEFDTLPERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTD 60
           M  VCWPYFDP+FD+LPERI+GPT  VCIDNESMEDCTVVKVDSV+KQGLLLE+VQVLTD
Sbjct: 1   MKNVCWPYFDPDFDSLPERIFGPT--VCIDNESMEDCTVVKVDSVNKQGLLLEVVQVLTD 58

Query: 61  MNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAKTYT 120
           +NLTI+K YISSDAGWFMDVFHVKDEHG KL DQ VINYIQQ I           A+ YT
Sbjct: 59  LNLTIAKGYISSDAGWFMDVFHVKDEHGKKLRDQNVINYIQQVINCDLSPSYPPNARAYT 118

Query: 121 NKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVS 180
           N  +F +++ SEHTAIEM+GTDRPGLFSEISAALADL CNIVE HAWSHN RLACVAY+S
Sbjct: 119 NN-IFEADHSSEHTAIEMSGTDRPGLFSEISAALADLQCNIVEVHAWSHNARLACVAYIS 177

Query: 181 DQSTDTPIDDPGRLATIEEYITTVLRATAERSPSE-THINPLQVKANGFPCGDCIKTNVE 239
           D S+ TPI+DP RLA+IE+++TTVLRA   RS  E + IN  +VK  GF  G+   +NVE
Sbjct: 178 DPSSHTPIEDPHRLASIEDHLTTVLRANTVRSAGEPSQINNREVKTGGFLGGEGTVSNVE 237

Query: 240 RRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYIESCEEKGYSIVSVDC 299
           RRLHQLMLSVRDFDG        S+ S+  G  + +G  +  V IE+C++K YSIV+++C
Sbjct: 238 RRLHQLMLSVRDFDGPI------SSSSTGTGLNNNKGGSKMVVSIENCDQKEYSIVNIEC 291

Query: 300 KDRPRLMFDTVCTLTDMQYVVFHASIGC-HGDYAFQEYFIRHIDGYALNTEGEKERVIKC 358
           KDR RLMFDT+CTL DMQYV+FHAS+   H   AFQEYFIRH DGYA NTE EKERVIKC
Sbjct: 292 KDRRRLMFDTICTLNDMQYVIFHASVSSDHDGRAFQEYFIRHKDGYARNTESEKERVIKC 351

Query: 359 LEAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRD 418
           LEAAIERRV EGV L+L A NR+GLLSDITRVLRENGLAVVRA VAT+GEK+VNAFY+RD
Sbjct: 352 LEAAIERRVSEGVLLKLRAENRLGLLSDITRVLRENGLAVVRADVATEGEKAVNAFYVRD 411

Query: 419 ISGNEVDMDFVESMKKEILGPIDLAV 444
           ISGNEVDM F++SMKKE +G  DL V
Sbjct: 412 ISGNEVDMGFIKSMKKE-MGLTDLEV 436

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294460934|gb|ADE76039.1| unknown [Picea sitchensis]

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 270/481 (56%), Positives = 347/481 (72%), Gaps = 33/481 (6%)

Query: 1   MNKVCWPYFDPEFDTLPERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTD 60
           M  VCWPYFDP+F++L +RI+ P   VCIDN++ EDC++VKV+S ++ G+LLE+VQVLTD
Sbjct: 1   MESVCWPYFDPDFESLNQRIHPPM--VCIDNDTCEDCSLVKVESANRHGILLEVVQVLTD 58

Query: 61  MNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAKTYT 120
           ++L ISK+YISSD  WFMDVFHV D+ GNKLTDQ++I+YIQQA+G   +  S+   KT  
Sbjct: 59  LDLIISKAYISSDGRWFMDVFHVTDQLGNKLTDQRIIDYIQQALGAK-QGGSTTEVKTCL 117

Query: 121 NKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVS 180
            + V G +   EHTAIE+TGTDRPGL SEISA L +L CN+V A  W+HN R+ACV YV+
Sbjct: 118 GRTV-GVQSIGEHTAIELTGTDRPGLLSEISAVLTNLKCNVVAAEVWTHNMRVACVVYVT 176

Query: 181 DQSTDTPIDDPGRLATIEEYITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVER 240
           D+ST  PI++P +LA I+E ++ VL+   +R   +T           F  G    T+ ER
Sbjct: 177 DESTSRPIEEPEQLAAIKEQLSNVLKGNDDRRGVKTD----------FSMG---LTHTER 223

Query: 241 RLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYIESCEEKGYSIVSVDCK 300
           RLHQ+M + RD++G   P+      + ++G   E G  R  + IE+C EKGYS+V+V CK
Sbjct: 224 RLHQMMFADRDYEG---PD------TRSLG---ENG--RPIIKIENCNEKGYSVVTVHCK 269

Query: 301 DRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLE 360
           DRP+L+FDTVCTLTDMQYVV HA+I   G YA QEY+IRH+DG  L+TEGEK+RVIKCLE
Sbjct: 270 DRPKLLFDTVCTLTDMQYVVLHATITSSGTYALQEYYIRHMDGCTLDTEGEKQRVIKCLE 329

Query: 361 AAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDIS 420
           AAIERRV EGVRLELC ++RVGLLSDITR+ RENGL+V RA V T+ +K+VN FY+ D S
Sbjct: 330 AAIERRVSEGVRLELCTSDRVGLLSDITRIFRENGLSVTRADVTTRADKAVNVFYVTDTS 389

Query: 421 GNEVDMDFVESMKKEILGPIDLAVKNDSRSTSPSPPDRS-PTRFSLGDLLRSQLERLSHN 479
           GN VDM  VE+M++EI G   L VK+   S  P P D     +FS G LL+SQLERLS+N
Sbjct: 390 GNPVDMKIVEAMRREI-GHTILQVKSIPSSPRPCPTDTGDKAKFSFGSLLKSQLERLSYN 448

Query: 480 F 480
           F
Sbjct: 449 F 449

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	484
TAIR|locus:2145482	500	AT5G25320 [Arabidopsis thalian	0.991	0.96	0.646	1.6e-164
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.415	0.441	0.504	2.3e-99
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.413	0.438	0.502	3.7e-99
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.404	0.452	0.492	5.4e-96
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.944	0.958	0.445	4.2e-95
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.336	0.363	0.506	2.4e-85
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.382	0.419	0.445	3.6e-82
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.634	0.677	0.425	3.8e-62
TIGR_CMR|GSU_1820	902	GSU_1820 "protein-P-II uridyly	0.177	0.095	0.372	4.8e-05

TAIR|locus:2145482 AT5G25320 [Arabidopsis thaliana (taxid:3702)]

 Score = 1601 (568.6 bits), Expect = 1.6e-164, P = 1.6e-164
 Identities = 323/500 (64%), Positives = 382/500 (76%)

Query:     1 MNKVCWPYFDPEFDTLPERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTD 60
             M KVCWPYFDP+FD L ERIYGP CRV IDN+S++DCTVVKV+S +KQGLLLE+VQ+LTD
Sbjct:     1 MQKVCWPYFDPDFDNLGERIYGPPCRVYIDNDSIQDCTVVKVNSENKQGLLLEVVQILTD 60

Query:    61 MNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAKTYT 120
             MNL I+KSYISSD GWFMDVFHVKDEHGNKLTD+ VIN+I+ AIGT+        A    
Sbjct:    61 MNLIITKSYISSDGGWFMDVFHVKDEHGNKLTDKSVINHIKHAIGTSRRESDFIKASEAN 120

Query:   121 NKAVFGSEYP-SEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYV 179
             N ++        EHTAIEMTGTDRPGLFSEI AA ADLHCN++EAHAWSHN RLAC+AYV
Sbjct:   121 NNSLEPQLADHGEHTAIEMTGTDRPGLFSEIFAAFADLHCNVMEAHAWSHNARLACIAYV 180

Query:   180 SDQSTDTPIDDPGRLATIEEYITTVLRATAERSPSETHINPLQVKANGFPCGD---CIKT 236
             SD +T TPIDDP RLA+IE++++TV+RATA+ + + TH+   + + +GF  G    C+ +
Sbjct:   181 SDDNTHTPIDDPSRLASIEDHLSTVIRATADPASNSTHVGHKENETDGFLAGQGKGCMNS 240

Query:   237 NVERRLHQLMLSVRDFDGQ-CGPNMSRSTPSSAVGFGDEEGMRRTAVYIESCEEKGYSIV 295
             N+ERRLHQLMLSVRDFD   C P+ S S  SS + + D +  + T V I +CEE+GYSIV
Sbjct:   241 NMERRLHQLMLSVRDFDEPFCEPS-SLSLLSSKLEYCDHKERKTTIVSIGNCEERGYSIV 299

Query:   296 SVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERV 355
             +V  KDR RLMFDT+CTL DMQYV+FHA++   G  AFQEYFIRHIDG ALNTEGEKERV
Sbjct:   300 TVKSKDRRRLMFDTICTLVDMQYVIFHAALRSDGADAFQEYFIRHIDGRALNTEGEKERV 359

Query:   356 IKCLEAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFY 415
             IKCLEAAIERRVCEGV+LELCA NRVGLLSDITRVLRENGL VVRA V T+G+KS+NAFY
Sbjct:   360 IKCLEAAIERRVCEGVKLELCAENRVGLLSDITRVLRENGLTVVRADVETQGQKSLNAFY 419

Query:   416 LRDISGNEVDMDFVESMKKEILGPIDLAVKNXXXXXXXXXXXXXXXX------------- 462
             +RDISGN++DM+FVES+KKE + PI L VKN                             
Sbjct:   420 VRDISGNKIDMEFVESVKKE-MRPIHLEVKNEDTKIDTVGSDEPTASASATPQRQPQPHR 478

Query:   463 FSLGDLLRSQLERLSHNFVP 482
             FSLGD+LRSQ+ERLS NFVP
Sbjct:   479 FSLGDILRSQMERLSLNFVP 498

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 2.3e-99, Sum P(2) = 2.3e-99
 Identities = 107/212 (50%), Positives = 147/212 (69%)

Query:   235 KTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYIESCEEKGYSI 294
             + + +RRLHQ+M   RD++ +   + S           DE   +R  V +++  +K YS+
Sbjct:   214 EVHTDRRLHQMMFEDRDYEHRLVDDDS--------SIQDER--QRPDVCVDNWLDKDYSV 263

Query:   295 VSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKER 354
             V+V CKDRP+L+FDTVCTLTDMQYVVFH S+   G  AFQEY++RHIDG  + +E EK+R
Sbjct:   264 VTVRCKDRPKLLFDTVCTLTDMQYVVFHGSVDTEGTEAFQEYYVRHIDGSPVKSEAEKQR 323

Query:   355 VIKCLEAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAF 414
             VI+CLEAAI+RRV EG++LELC  +RVGLLS++TR+ REN L V RA V TKG K++N F
Sbjct:   324 VIQCLEAAIKRRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVKTKGGKALNTF 383

Query:   415 YLRDISGNEVDMDFVESMKKEILGPIDLAVKN 446
             Y+ D SG  +D   ++S+++ I G   L VKN
Sbjct:   384 YVSDASGYSIDAKTIDSIRQTI-GQTILKVKN 414

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
 Identities = 106/211 (50%), Positives = 146/211 (69%)

Query:   235 KTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYIESCEEKGYSI 294
             +T+ +R+LHQLM + RD+D +   N+            D+ G     V + +  +  YSI
Sbjct:   222 ETHTDRKLHQLMFADRDYD-EWENNVDDE---------DKCGRVIPDVDVSNLHDLDYSI 271

Query:   295 VSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKER 354
             V + CKDRP+L+FDTV TLTDM YVV HASI   G  A+QEY+IRH DG  + +E E++R
Sbjct:   272 VMIKCKDRPKLLFDTVFTLTDMNYVVSHASIDAEGPQAYQEYYIRHTDGSPVKSEAERQR 331

Query:   355 VIKCLEAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAF 414
             VIKCL+AAI+RRV EG++LELC ++RVGLLSD+TR+ REN L V RA V TKG+K++N F
Sbjct:   332 VIKCLKAAIQRRVSEGLKLELCTSDRVGLLSDVTRIFRENSLTVTRAEVKTKGDKALNTF 391

Query:   415 YLRDISGNEVDMDFVESMKKEILGPIDLAVK 445
             Y+RD SG +VD   +ES++ +++G   L VK
Sbjct:   392 YVRDASGYQVDTKTIESIR-QVIGQTILQVK 421

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 5.4e-96, Sum P(2) = 5.4e-96
 Identities = 105/213 (49%), Positives = 141/213 (66%)

Query:   233 CIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYIESCEEKGY 292
             C  T+ ERRLHQ+M   RD++G      S S PS             T + IE    K Y
Sbjct:   205 CSDTHRERRLHQIMFDDRDYEGVKRARTSASRPSV------------TLMNIE----KDY 248

Query:   293 SIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEK 352
             ++V++  KDRP+L+FD VCTLTDMQYVVFH  +      A+QE++IRH+DG  +N+E E+
Sbjct:   249 TVVTMRSKDRPKLVFDVVCTLTDMQYVVFHGMVSTEPVEAYQEFYIRHVDGLPINSEAEQ 308

Query:   353 ERVIKCLEAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVN 412
             ERVI+CLEAAIERR  EG+ LEL A +RVGLLSDITR  REN L +VRA ++T+  K+ +
Sbjct:   309 ERVIQCLEAAIERRASEGLELELSAEDRVGLLSDITRTFRENSLTIVRAEISTREGKAKD 368

Query:   413 AFYLRDISGNEVDMDFVESMKKEILGPIDLAVK 445
              FY+ D++GN V+   VES++++I G   L VK
Sbjct:   369 TFYVTDVTGNPVESKIVESIRQQI-GVSKLKVK 400

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
 Identities = 213/478 (44%), Positives = 294/478 (61%)

Query:     7 PYFDPEFDTLPERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTIS 66
             P  D E ++L ERI  P  RVC+DN+S  +CT++KVDS +K G+LL+MVQVL D++L IS
Sbjct:     8 PRIDSEIESLVERINPP--RVCVDNDSDPECTLIKVDSANKYGILLDMVQVLADLDLVIS 65

Query:    67 KSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAI--GTTGEIPSSAVAKTYTNKAV 124
             K YISSD  WFMDVFHV D+ GNKLTD+ +I YIQQAI    TG I      ++   + V
Sbjct:    66 KCYISSDGEWFMDVFHVTDQLGNKLTDRSLILYIQQAICSSRTGGITKEM--QSNLKREV 123

Query:   125 FGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQST 184
                   +EHTA E+TG +RPGL SEISA L+D+ C++  A AW+H++R A V Y+ D   
Sbjct:   124 QQRHVSTEHTAFEITGINRPGLLSEISAVLSDIGCHVTAAVAWTHHERAAMVIYLEDGFN 183

Query:   185 DTPIDDPGRLATIEEYITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQ 244
               PI DP R A +++++ TV+ A        +H+    V+A G P G     + ERRLH+
Sbjct:   184 GGPIIDPIRKAQVKDHLDTVMEAH-HIVGDVSHVVVRVVEAKGVPVG---WAHTERRLHE 239

Query:   245 LMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYIESCEEKGYSIVSVDCKDRPR 304
             LM    D++  C           A+  G  E   R  V IE+C   GYS+V+V C+DRP+
Sbjct:   240 LMYGEGDYEN-CFDCDCFGDRCDALWRGRCE---RIHVTIEACN--GYSMVNVKCRDRPK 293

Query:   305 LMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIE 364
             L+FDTVC L ++Q+VVFHA  G  G  A QEYFIR  +G  L TEG++ER+  CL AAI 
Sbjct:   294 LLFDTVCALKELQFVVFHAVAGAKGSTAEQEYFIRKKNGGTLETEGQRERLRHCLVAAIS 353

Query:   365 RRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEV 424
             RR  +G++LE+   N++GLLSD+TRV+RENGL++ RA + T+GE +V +FY+ D++G E 
Sbjct:   354 RRASQGLKLEIRTENKMGLLSDVTRVVRENGLSITRAEMCTQGEIAVGSFYVTDVNGGET 413

Query:   425 DMDFVESMKKEILGPIDLAVKNXXXX-----XXXXXXXXXXXXFSLGDLLRSQLERLS 477
                 VE++ +E+ G +  AVK                       S+G +  S+LERLS
Sbjct:   414 GPSEVEAVVRELGGAVVSAVKGVGMMPRRIGSTSDSVEQDKAKSSIGRMFWSKLERLS 471

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 2.4e-85, Sum P(2) = 2.4e-85
 Identities = 83/164 (50%), Positives = 129/164 (78%)

Query:   282 VYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHI 341
             V +++  ++GYS+V++ CKDR +L+FD VCTLTDM Y+VFHA+I   G+ AF E+++RH 
Sbjct:   234 VSVQNLPKRGYSVVNLQCKDRMKLLFDVVCTLTDMAYIVFHAAIRTVGETAFLEFYVRHS 293

Query:   342 DGYALNTEGEKERVIKCLEAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRA 401
             DG+ +++E E++R+I+CL+AAIERR  +GVRLELC A+R GLL+++TR+LRENGL + RA
Sbjct:   294 DGHPVSSEPERQRLIQCLQAAIERRTVKGVRLELCTADRPGLLAEVTRILRENGLNIARA 353

Query:   402 HVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEILGPIDLAVK 445
              ++TK   + N FY+ D +GN +D + ++S++++I G  DL+VK
Sbjct:   354 EISTKDSIARNVFYVTDANGNLIDPEIIKSIREKI-GIDDLSVK 396

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 3.6e-82, Sum P(2) = 3.6e-82
 Identities = 89/200 (44%), Positives = 133/200 (66%)

Query:   237 NVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYIESCEEKGYSIVS 296
             ++ERRLHQLM   RD++ +     S+    S +            V +++  E+GYS+V+
Sbjct:   206 HIERRLHQLMFEDRDYERR-----SKKHERSPM----------VVVTVQNWAERGYSVVN 250

Query:   297 VDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVI 356
             V C+DR +L+FD VCTLTDM+Y VFHA+I    D A  E++IRH DG  +++E E++RVI
Sbjct:   251 VHCRDRTKLLFDVVCTLTDMEYAVFHATINTAEDQAHLEFYIRHKDGSPISSEAERQRVI 310

Query:   357 KCLEAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYL 416
             +CLEAA+ERR  EGVRLEL   ++ GLL+++TR  RENGL V R  ++T  + + N FY+
Sbjct:   311 QCLEAAVERRALEGVRLELRHPDKQGLLAEVTRTFRENGLNVTRTEISTSSDMATNIFYV 370

Query:   417 RDISGNEVDMDFVESMKKEI 436
              D +G+E D   +ES++++I
Sbjct:   371 TDANGDEPDFKLIESVREKI 390

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 143/336 (42%), Positives = 204/336 (60%)

Query:     1 MNKVCWPYFDPEFDTLPERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTD 60
             M KV WPYFDPE++ L  RI  P+  V IDN S ++CT+VKVDS++K G+LLE+VQVLTD
Sbjct:     1 MAKVYWPYFDPEYENLSSRINPPS--VSIDNTSCKECTLVKVDSMNKPGILLEVVQVLTD 58

Query:    61 MNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAKTYT 120
             ++LTI+K+YISSD GWFMDVFHV D+ GNK+TD K I+YI++ +G  G   +SA   T+ 
Sbjct:    59 LDLTITKAYISSDGGWFMDVFHVTDQQGNKVTDSKTIDYIEKVLGPKGH--ASASQNTWP 116

Query:   121 NKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVS 180
              K V G     +HT+IE+   DRPGL SE+SA LADL+ N+V A AW+HN R+ACV YV+
Sbjct:   117 GKRV-GVHSLGDHTSIEIIARDRPGLLSEVSAVLADLNINVVAAEAWTHNRRIACVLYVN 175

Query:   181 DQSTDTPIDDPGRLATIEEYITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVER 240
             D +T   +DDP RL+++EE +  VLR   E+       + L + +          T+V+R
Sbjct:   176 DNATSRAVDDPERLSSMEEQLNNVLRGCEEQDEKFARTS-LSIGS----------THVDR 224

Query:   241 RLHQLMLSVRDFDGQCGPNMSRST---PSSAVGFGDEEGMRRTAVYIESCEEKGYSIVSV 297
             RLHQ+  + RD++     + S S    P   V   +E+G    +V   SCE++   +  +
Sbjct:   225 RLHQMFFADRDYEAVTKLDDSASCGFEPKITVEHCEEKGY---SVINVSCEDRPKLMFDI 281

Query:   298 DCK--DRPRLMFDTVCTLT----DMQYVVFHASIGC 327
              C   D   ++F    + +      +Y + H   GC
Sbjct:   282 VCTLTDMQYIVFHATISSSGSHASQEYFIRHKD-GC 316

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TIGR_CMR|GSU_1820 GSU_1820 "protein-P-II uridylyltransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 132 (51.5 bits), Expect = 4.8e-05, P = 4.8e-05
 Identities = 32/86 (37%), Positives = 47/86 (54%)

Query:    26 RVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKD 85
             RV IDNE   D TV+ + +  K GLL  +   LTD+ L I  + IS+      DVF+VKD
Sbjct:   816 RVDIDNEVSSDYTVIDIYTHDKVGLLYRITSTLTDLGLYIGIAKISTKVDQVADVFYVKD 875

Query:    86 EHGNKLTDQKVINYIQQAIGTTGEIP 111
               G+K+T  + +  I++ +    E P
Sbjct:   876 IFGHKITSVERLEEIREKLRVAVEQP 901


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      484       468   0.00098  118 3  11 22  0.39    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  288 KB (2150 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  37.24u 0.16s 37.40t   Elapsed:  00:00:01
  Total cpu time:  37.24u 0.16s 37.40t   Elapsed:  00:00:01
  Start:  Fri May 10 07:45:56 2013   End:  Fri May 10 07:45:57 2013

GO:0006542 "glutamine biosynthetic process" evidence=ISS

GO:0008773 "[protein-PII

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032680001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (481 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	484
cd04897	75	cd04897, ACT_ACR_3, ACT domain-containing protein	1e-40
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	1e-38
cd04925	74	cd04925, ACT_ACR_2, ACT domain-containing protein	2e-36
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	1e-30
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	2e-21
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	2e-18
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	1e-17
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	7e-15
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	1e-14
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	2e-12
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	3e-12
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	4e-10
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	6e-08
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	2e-07
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	2e-07
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	4e-07
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	6e-07
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	4e-06
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	5e-06
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	1e-05
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	3e-05
pfam01842	66	pfam01842, ACT, ACT domain	4e-05
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	5e-05
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	9e-05
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	9e-05
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	1e-04
PRK04374	869	PRK04374, PRK04374, PII uridylyl-transferase; Prov	2e-04
pfam01842	66	pfam01842, ACT, ACT domain	4e-04
cd04875	74	cd04875, ACT_F4HF-DF, N-terminal ACT domain of for	4e-04
cd04928	68	cd04928, ACT_TyrKc, Uncharacterized, N-terminal AC	5e-04
pfam13740	76	pfam13740, ACT_6, ACT domain	5e-04
cd04876	71	cd04876, ACT_RelA-SpoT, ACT domain found C-termina	6e-04
cd04925	74	cd04925, ACT_ACR_2, ACT domain-containing protein	8e-04
pfam01842	66	pfam01842, ACT, ACT domain	0.001
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	0.002
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	0.002
pfam13291	77	pfam13291, ACT_4, ACT domain	0.002
PRK03059	856	PRK03059, PRK03059, PII uridylyl-transferase; Prov	0.003
cd04893	77	cd04893, ACT_GcvR_1, ACT domains that comprise the	0.003
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	0.004

>gnl|CDD|153169 cd04897, ACT_ACR_3, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  139 bits (353), Expect = 1e-40
 Identities = 54/75 (72%), Positives = 64/75 (85%)

Query: 292 YSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGE 351
           YS+V+V C+DRP+L+FD VCTLTDM YVVFHA+I   GD A QEY+IRH DG  L+TEGE
Sbjct: 1   YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGE 60

Query: 352 KERVIKCLEAAIERR 366
           ++RVIKCLEAAIERR
Sbjct: 61  RQRVIKCLEAAIERR 75

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  134 bits (339), Expect = 1e-38
 Identities = 47/72 (65%), Positives = 60/72 (83%)

Query: 37  CTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKV 96
           CT+VKVDS  K G+LLE VQVLTD++L I+K+YISSD GWFMDVFHV D+ GNKLTD  +
Sbjct: 1   CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSL 60

Query: 97  INYIQQAIGTTG 108
           I YI++++GT+ 
Sbjct: 61  IAYIEKSLGTSR 72

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153197 cd04925, ACT_ACR_2, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  128 bits (324), Expect = 2e-36
 Identities = 51/74 (68%), Positives = 59/74 (79%)

Query: 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGR 193
           TAIE+TGTDRPGL SE+ A LADLHCN+VEA AW+HN RLACV YV D+ T  PIDDP R
Sbjct: 1   TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIR 60

Query: 194 LATIEEYITTVLRA 207
           LA+IE+ +  VLR 
Sbjct: 61  LASIEDRLDNVLRG 74

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 74

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  112 bits (283), Expect = 1e-30
 Identities = 41/73 (56%), Positives = 55/73 (75%), Gaps = 1/73 (1%)

Query: 370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFV 429
           GVRLEL   +RVGLLSD+TRV RENGL V RA ++T+G+ +VN FY+ D +GN VD   +
Sbjct: 1   GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTI 60

Query: 430 ESMKKEILGPIDL 442
           E++++EI GP  L
Sbjct: 61  EAVRQEI-GPACL 72

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 87.5 bits (218), Expect = 2e-21
 Identities = 27/67 (40%), Positives = 42/67 (62%)

Query: 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVE 430
             LEL A +R GLL+D+TRVL E GL +  A +AT GE++ + FY+ D  G  +D +  E
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQE 60

Query: 431 SMKKEIL 437
           +++  + 
Sbjct: 61  ALRAALG 67

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 78.7 bits (195), Expect = 2e-18
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGR 193
           T +E+T  DRPGL ++++  LA+L  NI  A   +  +R   V YV+D        DP R
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP--LDPER 58

Query: 194 LATIEEYITTVL 205
              +   +   L
Sbjct: 59  QEALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 76.8 bits (190), Expect = 1e-17
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGR 193
           T +E+   DRPGL ++I+  LADL  NI +A   +  +R   V YV+D   D    DP R
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS--DGRPLDPER 58

Query: 194 LATIEEYITTVL 205
           +A +EE +   L
Sbjct: 59  IARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 69.1 bits (170), Expect = 7e-15
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 293 SIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEK 352
           ++V V   DRP L+ D    L D+   +  A I   G+ A   +++   DG  L+ E   
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPE-RI 59

Query: 353 ERVIKCLEAAI 363
            R+ + LE A+
Sbjct: 60  ARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 68.3 bits (168), Expect = 1e-14
 Identities = 23/64 (35%), Positives = 43/64 (67%)

Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESM 432
           +E+ A +R GLL+DITRVL + GL +  A ++T GE++++ FY+ D  G  +D + +  +
Sbjct: 3   VEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARL 62

Query: 433 KKEI 436
           ++ +
Sbjct: 63  EEAL 66

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 61.8 bits (151), Expect = 2e-12
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 38  TVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTD---Q 94
           TVV+V +  + GLL ++ +VL D+ L I  + IS+     +DVF+V D  G  L      
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIA 60

Query: 95  KVINYIQQAI 104
           ++   ++ A+
Sbjct: 61  RLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 68.7 bits (169), Expect = 3e-12
 Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 16/163 (9%)

Query: 67  KSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAI--GTTGEIPSSAVAKTYTNK-- 122
           + + ++D G  +D F ++D  G    + + +  + +AI    +GE+         T    
Sbjct: 764 RIFTTTD-GRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGEVRLPEALAKRTKPKK 822

Query: 123 ----------AVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDR 172
                         +E  +  T IE+ G DRPGL  +++ AL+DL+ NI  AH  ++ +R
Sbjct: 823 RARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGER 882

Query: 173 LACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATAERSPSE 215
              V YV+D      I +  R A I   +   L      + + 
Sbjct: 883 AVDVFYVTD-LFGLKITNEARQAAIRRALLAALAEGEAEARAA 924

Length = 931

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 55.6 bits (135), Expect = 4e-10
 Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 142 DRPGLFSEISAALADLHCNIVEAHAWSHNDRLAC-VAYVSDQSTDTPIDDPGRLATIEEY 200
           DRPGLF+ I+ AL  L  NI++A  ++  D  A     V D     PI +  RLA I E 
Sbjct: 10  DRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPD-GEPIGERERLARIREA 68

Query: 201 ITTVL 205
           +   L
Sbjct: 69  LEDAL 73

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 55.0 bits (133), Expect = 6e-08
 Identities = 21/49 (42%), Positives = 29/49 (59%)

Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISG 421
           LE+ AA+R GLL+ + R L   G+ V  A VAT G   V+ FY+   +G
Sbjct: 710 LEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAG 758

Length = 774

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 53.3 bits (129), Expect = 2e-07
 Identities = 28/79 (35%), Positives = 51/79 (64%)

Query: 26  RVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKD 85
           RV IDNE+    TV++V+   + GLL ++ + L+D+NL I+ ++I++     +DVF+V D
Sbjct: 832 RVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTD 891

Query: 86  EHGNKLTDQKVINYIQQAI 104
             G K+T++     I++A+
Sbjct: 892 LFGLKITNEARQAAIRRAL 910

Length = 931

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 33/156 (21%)

Query: 299 CKDRPRLMFDTVCTLTDMQYVVFHASI-GCHGDYAFQEYFIRHIDGYALNTEGEKERVIK 357
             D+P L       L  +   V  A +       A   + ++ + G     E   + +++
Sbjct: 675 APDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQ 734

Query: 358 CLEAAIE------------RRVCEGVR--------------------LELCAANRVGLLS 385
            L   +             R     ++                    +E+ A +R GLL+
Sbjct: 735 GLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLA 794

Query: 386 DITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISG 421
            + R L E GL++  A + T GEK+ + FY+ D+ G
Sbjct: 795 RVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFG 830

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 52.6 bits (127), Expect = 4e-07
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISG 421
           +E+   +R GLL D+TR L +  L +  AH+AT GE++V+ FY+ D+ G
Sbjct: 846 IEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFG 894

Length = 931

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 52.0 bits (125), Expect = 6e-07
 Identities = 38/181 (20%), Positives = 69/181 (38%), Gaps = 29/181 (16%)

Query: 295 VSVDCKDRPRLMFDTVCTLTDMQYVVFHASI-GCHGDYAFQEYFIRHIDGYALNTEGEKE 353
           V V   DRPRL       L+     +  A I      YA   + +   DG+ +  +    
Sbjct: 687 VFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAA 746

Query: 354 RVIKCLEA--------AIERRVCEGVR--------------------LELCAANRVGLLS 385
              + +EA           RR+   +R                    LE+ A +R GLL+
Sbjct: 747 LRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLA 806

Query: 386 DITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEILGPIDLAVK 445
            +  V  + GL++  A + T GE+  + F + D  G  ++ +  +S+ + +L  +    +
Sbjct: 807 ALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNAELRQSLLQRLLEALLPNDE 866

Query: 446 N 446
            
Sbjct: 867 G 867

Length = 867

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 47  KQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT 106
           + GLL ++ +V  +  LT++++ IS+     ++VF+V D +GN   D K I  ++Q IG 
Sbjct: 11  RVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNP-VDPKTIEAVRQEIGP 69

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 44.0 bits (105), Expect = 5e-06
 Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 38  TVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVI 97
           TV+++ ++ + GLL ++ +VL ++ L I  + I++      DVF+V D  G  L D +  
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPL-DPERQ 59

Query: 98  NYIQQAIGTT 107
             ++ A+G  
Sbjct: 60  EALRAALGEA 69

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 33/187 (17%), Positives = 72/187 (38%), Gaps = 15/187 (8%)

Query: 11  PEFDTLPERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTI-SKSY 69
              ++L   +        ID       T V + +  + GL  ++   L  ++L++     
Sbjct: 642 WHAESLRRALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQV 701

Query: 70  ISSDAGWFMDVFHVKDEHG----NKLTDQKVINYIQQAIGTTGEIPSSAVAKTYTNKAV- 124
            ++  G  +D F V+D  G     +   Q+++  +   +    + P +  A+    + + 
Sbjct: 702 NTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQ 761

Query: 125 ---------FGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLAC 175
                      +    + T +E+   DRPGL + +   L +L  +I  A   +  ++   
Sbjct: 762 HFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAED 821

Query: 176 VAYVSDQ 182
           V YV+D 
Sbjct: 822 VFYVTDL 828

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 23/71 (32%), Positives = 39/71 (54%)

Query: 23  PTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFH 82
              RV I N +    T+++V ++ + GLL  + + L ++ L+I  + I++      DVF+
Sbjct: 765 VPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFY 824

Query: 83  VKDEHGNKLTD 93
           V D  G KLTD
Sbjct: 825 VTDLFGLKLTD 835

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGR 193
           T +E+   DRPGL +E+  ALAD   NI      +  D+               + D   
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKA-------GIVFIVVVVDEED 53

Query: 194 LATIEE 199
           L    E
Sbjct: 54  LEAALE 59

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLA 195
           + ++G DRPGL +++ + LA+   NI      +  D      ++        +D  G L 
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIV-------VDGDGDLE 53

Query: 196 TIEEYI 201
            + E +
Sbjct: 54  KLLEAL 59

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 44.9 bits (107), Expect = 9e-05
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 131 SEHTAIEMT--GTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLAC-VAYVSDQSTDTP 187
                 E+T    D PGLFS I+ A A    NIV+A  ++  D  A    ++ D +    
Sbjct: 728 PARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRD 786

Query: 188 IDDPGRLATIEEYITTVLR 206
            D+P RLA + + I   L 
Sbjct: 787 EDEPRRLARLAKAIEDALS 805

Length = 931

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 23  PTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFH 82
           PT +V I N++    TV+++ +  + GLL  + ++  + +L++  + I++      DVF 
Sbjct: 801 PT-QVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFF 859

Query: 83  VKDEHGNKLTDQKVINYIQQAI 104
           + D     L+D ++ + +Q AI
Sbjct: 860 ITDADNQPLSDPQLCSRLQDAI 881

Length = 895

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDP 191
           + T +E+   DRPGL + ++   ADL  ++  A   +  +R+  V  V+D      ++  
Sbjct: 790 DKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDA-DGQALNAE 848

Query: 192 GRLATIEEYITTVL 205
            R + ++  +  +L
Sbjct: 849 LRQSLLQRLLEALL 862

Length = 867

>gnl|CDD|179839 PRK04374, PRK04374, PII uridylyl-transferase; Provisional

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 8/77 (10%)

Query: 360 EAAIERRVCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDI 419
           E+A  RR     R+ L A +R GLL+D+  VLR   L V  A +AT GE++ + F + D 
Sbjct: 790 ESAGGRRT----RISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITD- 844

Query: 420 SGNEVDMDFVESMKKEI 436
              E D    ES ++ +
Sbjct: 845 ---EHDRPLSESARQAL 858

Length = 869

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVE 430
             LE+   +R GLL+++   L + G+ +     +T G+K     ++  +   E     +E
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDK-AGIVFIVVVVDEEDLEAALE 59

Query: 431 SMKKEI 436
           ++KK +
Sbjct: 60  ALKKLL 65

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153147 cd04875, ACT_F4HF-DF, N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 142 DRPGLFSEISAALADLHCNIVEAHAWSHNDRLA 174
           DRPG+ + +S  LA+   NIVE+      D  +
Sbjct: 8   DRPGIVAAVSGFLAEHGGNIVESD--QFVDPDS 38

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 74

>gnl|CDD|153200 cd04928, ACT_TyrKc, Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query: 136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSD 181
           I     D+P L S++S+ L DL  NI EAHA+S +D LA   +V  
Sbjct: 4   ITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVT 49

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 68

>gnl|CDD|205914 pfam13740, ACT_6, ACT domain

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVS 180
           I  TG DRPGL + ++  LA+  CNI+++        L     VS
Sbjct: 5   ITATGPDRPGLTASLTRVLAEHGCNILDSRQAVIGGELTLGMLVS 49

ACT domains bind to amino acids and regulate associated enzyme domains. Length = 76

>gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains

 Score = 38.2 bits (90), Expect = 6e-04
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLA 174
           I +   DRPGL ++I+  +A+   NI+  +  + +D LA
Sbjct: 1   IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLA 39

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes in E. coli, a bifunctional Rel/Spo protein has been discovered in most gram-positive organisms studied so far. These bifunctional Rel/Spo homologs (rsh) appear to modulate (p)ppGpp levels through two distinct active sites that are controlled by a reciprocal regulatory mechanism ensuring inverse coupling of opposing activities. In studies with the Streptococcus equisimilis Rel/Spo homolog, the C-terminal domain appears to be involved in this reciprocal regulation of the two opposing catalytic activities present in the N-terminal domain, ensuring that both synthesis and degradation activities are not coinduced. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|153197 cd04925, ACT_ACR_2, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRD 418
           +EL   +R GLLS++  VL +    VV A   T   +     Y+RD
Sbjct: 3   IELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD 48

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 74

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 293 SIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEK 352
           +++ V   DRP L+ +    L D    +   S    GD A   + +  +D      E + 
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVD------EEDL 54

Query: 353 ERVIKCLEAAIE 364
           E  ++ L+  + 
Sbjct: 55  EAALEALKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLR 417
           L +   +R GLL+ +  VL E G+ +      T G+      ++ 
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIV 45

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEV-DMDFVES 431
           LE+ A +R GLL+ I R+  E  L++  A +AT GE+  + F++ D     + D      
Sbjct: 817 LEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876

Query: 432 MKKEILGPIDLAVKND 447
           ++  I   +D   + D
Sbjct: 877 LQDAICEQLDARNEKD 892

Length = 895

>gnl|CDD|222030 pfam13291, ACT_4, ACT domain

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 127 SEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLA 174
            EYP     +E+   DRPGL ++I+  +++   NI+  +A S ++ +A
Sbjct: 1   EEYP---ADLEIEAIDRPGLLADITTVISNEKANILSVNAESKDNGIA 45

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 77

>gnl|CDD|235101 PRK03059, PRK03059, PII uridylyl-transferase; Provisional

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 372 RLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNE 423
            L + A +R GLL  I RVL E+ ++V  A + T GE+  + F    I G+ 
Sbjct: 788 ILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFL---IDGSG 836

Length = 856

>gnl|CDD|153165 cd04893, ACT_GcvR_1, ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 13/32 (40%), Positives = 23/32 (71%)

Query: 133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEA 164
           H  I   GTDRPG+ +E++ A+++  CNI+++
Sbjct: 1   HLVISALGTDRPGILNELTRAVSESGCNILDS 32

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR interacts directly with GcvA rather than binding to DNA to cause repression. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 77

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 40/152 (26%)

Query: 299 CKDRPRLMFDTVCTLTDMQYVVFHASI--GCHGDYAFQEYFIRHIDGYALNTEGEKERVI 356
           C+D+  L    V T+   +  +  A I     G Y    + +  ++G  L  +  ++   
Sbjct: 684 CQDQANLFLKVVSTIGAKKLSIHDAQIITSQDG-YVLDSFIVTELNGKLLEFDRRRQ--- 739

Query: 357 KCLEAAIER---------------------RVCEGVR-----------LELCAANRVGLL 384
             LE A+ +                      V   VR           +EL A +R GLL
Sbjct: 740 --LEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLL 797

Query: 385 SDITRVLRENGLAVVRAHVATKGEKSVNAFYL 416
           + +++V  E  L ++ A + T GEK+ + F L
Sbjct: 798 AQVSQVFSELNLNLLNAKITTIGEKAEDFFIL 829

Length = 854

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	484
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.96
PRK05007	884	PII uridylyl-transferase; Provisional	99.96
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.95
PRK04374	869	PII uridylyl-transferase; Provisional	99.95
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.94
PRK03059	856	PII uridylyl-transferase; Provisional	99.94
PRK05007	884	PII uridylyl-transferase; Provisional	99.94
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.94
PRK05092	931	PII uridylyl-transferase; Provisional	99.94
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.94
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.93
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.93
PRK03381	774	PII uridylyl-transferase; Provisional	99.93
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.92
PRK05092	931	PII uridylyl-transferase; Provisional	99.91
PRK04374	869	PII uridylyl-transferase; Provisional	99.91
PRK03059	856	PII uridylyl-transferase; Provisional	99.91
PRK03381	774	PII uridylyl-transferase; Provisional	99.9
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.76
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.75
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.73
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.73
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.69
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.69
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.63
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.62
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.59
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.55
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.54
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.48
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.48
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.47
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.44
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.41
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.34
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.33
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.3
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.27
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.24
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.2
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.08
PRK00227	693	glnD PII uridylyl-transferase; Provisional	98.98
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.89
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.76
COG4747	142	ACT domain-containing protein [General function pr	98.53
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.53
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.5
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.47
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.38
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.29
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.28
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.25
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.24
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.24
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	97.95
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.93
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.85
PRK00194	90	hypothetical protein; Validated	97.83
PRK07431	587	aspartate kinase; Provisional	97.8
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.8
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.79
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.73
PRK00194	90	hypothetical protein; Validated	97.71
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.67
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.65
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.57
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.55
COG4747	142	ACT domain-containing protein [General function pr	97.5
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.5
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	97.49
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.46
COG3830	90	ACT domain-containing protein [Signal transduction	97.4
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.39
COG3830	90	ACT domain-containing protein [Signal transduction	97.26
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.24
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.2
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.18
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.1
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.1
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.06
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.05
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.01
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.0
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.99
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.91
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.87
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.85
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.82
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.77
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.71
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.69
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.68
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.66
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.66
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	96.63
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.6
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	96.6
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.59
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.59
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.58
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.57
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.55
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.53
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.43
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.43
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.38
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.38
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.34
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.3
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.3
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.28
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.23
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.2
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.18
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.15
PRK08577	136	hypothetical protein; Provisional	96.11
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.05
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.05
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.04
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.01
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	95.88
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.86
PRK04435	147	hypothetical protein; Provisional	95.82
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	95.81
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	95.75
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.66
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.66
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	95.63
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	95.49
cd02116	60	ACT ACT domains are commonly involved in specifica	95.44
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.33
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.22
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.16
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	95.16
PRK08577	136	hypothetical protein; Provisional	95.13
cd02116	60	ACT ACT domains are commonly involved in specifica	95.05
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.02
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	95.01
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	94.96
PRK07334	403	threonine dehydratase; Provisional	94.94
PRK07431	587	aspartate kinase; Provisional	94.9
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	94.85
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	94.79
PRK04435	147	hypothetical protein; Provisional	94.68
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	94.56
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	94.45
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.43
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	94.4
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	94.08
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	93.78
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	93.45
PRK07334	403	threonine dehydratase; Provisional	93.32
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	93.22
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	93.14
PRK11899	279	prephenate dehydratase; Provisional	93.1
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	92.97
PRK06635	404	aspartate kinase; Reviewed	92.91
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	92.89
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	92.86
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	92.74
PRK06635	404	aspartate kinase; Reviewed	92.64
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	92.5
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	92.46
PRK06291	465	aspartate kinase; Provisional	92.3
PRK08210	403	aspartate kinase I; Reviewed	92.09
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	92.01
COG1707	218	ACT domain-containing protein [General function pr	91.85
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	91.84
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	91.74
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	91.49
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	91.33
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	90.79
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	90.46
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	90.39
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	90.21
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	90.1
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	90.08
PRK11899	279	prephenate dehydratase; Provisional	89.8
PRK06545	359	prephenate dehydrogenase; Validated	89.43
PRK06382	406	threonine dehydratase; Provisional	89.35
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	89.25
PRK08210	403	aspartate kinase I; Reviewed	88.73
COG1707	218	ACT domain-containing protein [General function pr	88.68
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	88.24
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	87.97
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	87.84
PRK09034	454	aspartate kinase; Reviewed	87.68
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	87.61
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	86.93
PRK06291	465	aspartate kinase; Provisional	86.74
PRK09034	454	aspartate kinase; Reviewed	86.72
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	86.52
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	86.5
PRK06349	426	homoserine dehydrogenase; Provisional	86.4
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	86.34
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	86.08
PRK08818	370	prephenate dehydrogenase; Provisional	85.98
PRK08818	370	prephenate dehydrogenase; Provisional	85.52
PLN02551	521	aspartokinase	85.49
PRK06349	426	homoserine dehydrogenase; Provisional	85.12
PRK12483	521	threonine dehydratase; Reviewed	85.01
PRK08198	404	threonine dehydratase; Provisional	84.88
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	84.35
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	83.74
PRK09181	475	aspartate kinase; Validated	83.64
PRK06545	359	prephenate dehydrogenase; Validated	82.89
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	82.85
PRK06382	406	threonine dehydratase; Provisional	82.59
PRK09181	475	aspartate kinase; Validated	82.06
PLN02317	382	arogenate dehydratase	81.28
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	81.19
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	81.16
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	80.93
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	80.83

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.96  E-value=1.5e-28  Score=278.21  Aligned_cols=189  Identities=20%  Similarity=0.268  Sum_probs=158.5

Q ss_pred             hhhccccccc-CCceEEEEecCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEeeCCCC
Q 048063           12 EFDTLPERIY-GPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS-DAGWFMDVFHVKDEHGN   89 (484)
Q Consensus        12 ~~~~l~~~~~-~p~~~V~i~~~~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g~~~d~F~V~d~~g~   89 (484)
                      ||.+++.... +|  .|.++++++.++++|+|+++||||||++||++|+.+|+||++|+|.| .+|+++|+|+|++++|.
T Consensus       653 ~h~~~~~~~~~~~--~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~  730 (854)
T PRK01759        653 WHALLLLDFRGDL--LVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGK  730 (854)
T ss_pred             HHHHHHHhcCCCC--EEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCC
Confidence            4555554433 45  78899999999999999999999999999999999999999999955 99999999999999998


Q ss_pred             CCCcHHHHHHHHHH----HccCCC--C-CCcc----ccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCC
Q 048063           90 KLTDQKVINYIQQA----IGTTGE--I-PSSA----VAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLH  158 (484)
Q Consensus        90 ~~~~~~~~~~L~~~----L~~~~~--~-~~~~----~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~g  158 (484)
                      ++. +++++.|++.    |.+...  . .+..    ...+|++|. |+|+.+..+|+|+|.+.||||||++|+++|+++|
T Consensus       731 ~~~-~~~~~~l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~-~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~  808 (854)
T PRK01759        731 LLE-FDRRRQLEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVR-FLNEEKQEQTEMELFALDRAGLLAQVSQVFSELN  808 (854)
T ss_pred             CCC-HHHHHHHHHHHHHHHcCCCCcchhccccccccCCCCCCEEE-EccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCC
Confidence            875 4565555554    443321  0 0000    015688898 9999999999999999999999999999999999


Q ss_pred             CeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhc
Q 048063          159 CNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLR  206 (484)
Q Consensus       159 lnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~  206 (484)
                      ++|+.|+|.|.|++++|+|||++. .|.+++++++ ++|+++|.++|+
T Consensus       809 l~i~~AkI~T~gerv~D~Fyv~~~-~g~~l~~~~~-~~l~~~L~~~l~  854 (854)
T PRK01759        809 LNLLNAKITTIGEKAEDFFILTNQ-QGQALDEEER-KALKSRLLSNLS  854 (854)
T ss_pred             CEEEEEEEcccCceEEEEEEEECC-CCCcCChHHH-HHHHHHHHHHhC
Confidence            999999999999999999999998 7999987666 999999998874

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=6.8e-28  Score=273.76  Aligned_cols=190  Identities=18%  Similarity=0.216  Sum_probs=159.7

Q ss_pred             hhhccccccc--CCceEEEEecCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEE-EecCCeEEEEEEEeeCCC
Q 048063           12 EFDTLPERIY--GPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYI-SSDAGWFMDVFHVKDEHG   88 (484)
Q Consensus        12 ~~~~l~~~~~--~p~~~V~i~~~~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~I-tt~~g~~~d~F~V~d~~g   88 (484)
                      +|.+++.+..  +|  .|.+++.++.++++|+|+++||||||++||++|+.+|+||++|+| |+.+|+++|+|+|++.+|
T Consensus       676 ~h~~~~~~~~~~~p--~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g  753 (884)
T PRK05007        676 WHARHLLQHDLDKP--LVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDG  753 (884)
T ss_pred             HHHHHHHhccCCCC--eEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCC
Confidence            4555655432  55  788999999999999999999999999999999999999999998 457889999999999998


Q ss_pred             CCCCcHHHHHHHHH----HHccCCC----CCC----ccccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHh
Q 048063           89 NKLTDQKVINYIQQ----AIGTTGE----IPS----SAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALAD  156 (484)
Q Consensus        89 ~~~~~~~~~~~L~~----~L~~~~~----~~~----~~~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~  156 (484)
                      .++. .++++.|++    +|.+...    .+.    .....+|++|. |+|+.+..+|+|+|.+.||||||++|+++|.+
T Consensus       754 ~~~~-~~~~~~I~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~-~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~  831 (884)
T PRK05007        754 SPLS-QDRHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVS-FLPTHTDRRSYMELIALDQPGLLARVGKIFAD  831 (884)
T ss_pred             CCCC-HHHHHHHHHHHHHHHcCCCCCcccccccccccCCCCCCCEEE-EccCCCCCeEEEEEEeCCchHHHHHHHHHHHH
Confidence            8774 345555554    4544311    000    00115688898 99999999999999999999999999999999


Q ss_pred             CCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhcc
Q 048063          157 LHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRA  207 (484)
Q Consensus       157 ~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~g  207 (484)
                      +|++|++|+|+|.|++++|+|||++. .|.+++ +++.+.|+++|.++|..
T Consensus       832 ~~l~I~~AkI~T~gera~DvFyV~~~-~g~~l~-~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        832 LGISLHGARITTIGERVEDLFILATA-DRRALN-EELQQELRQRLTEALNP  880 (884)
T ss_pred             CCcEEEEEEEeccCceEEEEEEEEcC-CCCcCC-HHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999998 799997 67889999999999954

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.95  E-value=2.8e-27  Score=268.79  Aligned_cols=191  Identities=19%  Similarity=0.333  Sum_probs=161.4

Q ss_pred             hhhccccccc---CCceEEEEecCCC---CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEE-EecCCeEEEEEEEe
Q 048063           12 EFDTLPERIY---GPTCRVCIDNESM---EDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYI-SSDAGWFMDVFHVK   84 (484)
Q Consensus        12 ~~~~l~~~~~---~p~~~V~i~~~~~---~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~I-tt~~g~~~d~F~V~   84 (484)
                      ||.+++.+..   .|  .|.+...+.   .++++|+|+++||||||+++|++|+.+|+||++|+| ||.+|+++|+|+|+
T Consensus       675 ~h~~~~~~~~~~~~~--~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~  752 (895)
T PRK00275        675 WHTEAILQHPDDGGP--LVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVL  752 (895)
T ss_pred             HHHHHHHhcccCCCC--eEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEe
Confidence            6777776533   45  566777665   589999999999999999999999999999999998 67999999999999


Q ss_pred             eCCCCCCC-cHHHHHHHHHH----HccCCC------------CCCccccccccceeeecCCCCCCeEEEEEEecCCCchH
Q 048063           85 DEHGNKLT-DQKVINYIQQA----IGTTGE------------IPSSAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLF  147 (484)
Q Consensus        85 d~~g~~~~-~~~~~~~L~~~----L~~~~~------------~~~~~~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL  147 (484)
                      +++|.++. ++++++.|++.    |.+...            .++|   .+++.|. |+++.+.++|+|+|+++||||||
T Consensus       753 d~~g~~~~~~~~r~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~---~~~~~V~-i~~~~~~~~T~i~V~a~DrpGLL  828 (895)
T PRK00275        753 DDDGEPIGDNPARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHF---AFPTQVT-ISNDAQRPVTVLEIIAPDRPGLL  828 (895)
T ss_pred             CCCCCCccchHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhccCC---CCCCEEE-EEECCCCCeEEEEEEECCCCCHH
Confidence            99988743 34566665554    443321            0122   4578888 99999999999999999999999


Q ss_pred             HHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhcccc
Q 048063          148 SEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATA  209 (484)
Q Consensus       148 ~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~g~~  209 (484)
                      ++|+++|+.+|+||++|+|+|.++++.|+|||++. .|.++.+++++++|+++|.++|.+..
T Consensus       829 a~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~-~g~~l~~~~~~~~l~~~L~~~L~~~~  889 (895)
T PRK00275        829 ARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDA-DNQPLSDPQLCSRLQDAICEQLDARN  889 (895)
T ss_pred             HHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECC-CCCCCCCHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999998 79999888899999999999997653

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=2.7e-26  Score=259.40  Aligned_cols=190  Identities=17%  Similarity=0.227  Sum_probs=153.0

Q ss_pred             hhhccccccc--CCceEEEEec-CCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEE-EecCCeEEEEEEEeeCC
Q 048063           12 EFDTLPERIY--GPTCRVCIDN-ESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYI-SSDAGWFMDVFHVKDEH   87 (484)
Q Consensus        12 ~~~~l~~~~~--~p~~~V~i~~-~~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~I-tt~~g~~~d~F~V~d~~   87 (484)
                      ||.+++.+..  .|  .|.+.. .+..+.++|+|+++||||||++||++|+.+|+||++|+| +|.+|+++|+|+|++++
T Consensus       664 ~h~~~~~~~~~~~~--~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~  741 (869)
T PRK04374        664 WQAASLIEVEIGQT--LVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQD  741 (869)
T ss_pred             HHHHHHHhcCCCCC--eEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCC
Confidence            4666655433  45  555544 677789999999999999999999999999999999998 55999999999999988


Q ss_pred             CCCCCcH-HHHHHHHHHHccCCC-----CCC--c--cccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhC
Q 048063           88 GNKLTDQ-KVINYIQQAIGTTGE-----IPS--S--AVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADL  157 (484)
Q Consensus        88 g~~~~~~-~~~~~L~~~L~~~~~-----~~~--~--~~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~  157 (484)
                      |.....+ ...+.|+++|.+...     .+.  .  ....+||+|. |+++.+.++|+|+|.+.||||||++|+++|+.+
T Consensus       742 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~  820 (869)
T PRK04374        742 TYADGDPQRLAAALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVE-FSESAGGRRTRISLVAPDRPGLLADVAHVLRMQ  820 (869)
T ss_pred             CCChHHHHHHHHHHHHHHcCCCCccccccccCcccccCCCCCCeEE-EeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHC
Confidence            7632111 123445566665321     000  0  0015688898 999999999999999999999999999999999


Q ss_pred             CCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhc
Q 048063          158 HCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLR  206 (484)
Q Consensus       158 glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~  206 (484)
                      |+||++|+|+|.++++.|+|||++. +|.++.++++ +.|+++|.++|.
T Consensus       821 ~l~I~~AkI~T~g~~a~D~F~V~d~-~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        821 HLRVHDARIATFGERAEDQFQITDE-HDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             CCeEEEeEEEecCCEEEEEEEEECC-CCCcCChHHH-HHHHHHHHHHhc
Confidence            9999999999999999999999998 7888876666 999999999884

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.94  E-value=7.4e-26  Score=256.39  Aligned_cols=190  Identities=15%  Similarity=0.175  Sum_probs=165.2

Q ss_pred             cccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHH
Q 048063          118 TYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLAT  196 (484)
Q Consensus       118 ~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~  196 (484)
                      .++.|. ++++.+.++|+|+|+++||||||++|+++|+.+|+||++|+|+| .++.+.|+|+|++. +|.++. ++++++
T Consensus       663 ~~~~V~-i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~-~g~~~~-~~~~~~  739 (854)
T PRK01759        663 GDLLVK-ISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL-NGKLLE-FDRRRQ  739 (854)
T ss_pred             CCCEEE-EEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC-CCCCCC-HHHHHH
Confidence            355666 88899999999999999999999999999999999999999998 78899999999998 788885 679999


Q ss_pred             HHHHHHHHhcccccCCCCcccccccccccCCCCCCCCccchhhhhhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 048063          197 IEEYITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEG  276 (484)
Q Consensus       197 l~~~L~~~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (484)
                      |++.|.++|.++...   ..         .             ++..      +.    .                 ..+
T Consensus       740 l~~~L~~aL~~~~~~---~~---------~-------------~~~~------~~----~-----------------~~~  767 (854)
T PRK01759        740 LEQALTKALNTNKLK---KL---------N-------------LEEN------HK----L-----------------QHF  767 (854)
T ss_pred             HHHHHHHHHcCCCCc---ch---------h-------------cccc------cc----c-----------------cCC
Confidence            999999999886432   00         0             0000      00    0                 136


Q ss_pred             CcceEEEEeccCCCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHH
Q 048063          277 MRRTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVI  356 (484)
Q Consensus       277 ~~~p~V~v~n~~~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~  356 (484)
                      ..+|.|.|+|..+..+|+|.|.++|||||+|+|+++|.++|++|..|+|+|.++.+.|+|||.+.+|.+++++.+ ++|+
T Consensus       768 ~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~  846 (854)
T PRK01759        768 HVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEER-KALK  846 (854)
T ss_pred             CCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHH-HHHH
Confidence            778999999999999999999999999999999999999999999999999999999999999999999988766 9999


Q ss_pred             HHHHHHH
Q 048063          357 KCLEAAI  363 (484)
Q Consensus       357 ~~L~~~l  363 (484)
                      +.|.++|
T Consensus       847 ~~L~~~l  853 (854)
T PRK01759        847 SRLLSNL  853 (854)
T ss_pred             HHHHHHh
Confidence            9988765

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=1.1e-25  Score=254.89  Aligned_cols=187  Identities=14%  Similarity=0.195  Sum_probs=152.5

Q ss_pred             hhhccccccc---CCceEEEEecCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEE-EecCCeEEEEEEEeeCC
Q 048063           12 EFDTLPERIY---GPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYI-SSDAGWFMDVFHVKDEH   87 (484)
Q Consensus        12 ~~~~l~~~~~---~p~~~V~i~~~~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~I-tt~~g~~~d~F~V~d~~   87 (484)
                      ||.+++.+..   .|  .|.+...+..+.++|+|+++||||||++||++|+.+|+||++|+| +|.+|+++|+|+|++++
T Consensus       652 ~h~~~~~~~~~~~~~--~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~  729 (856)
T PRK03059        652 WHTRHLYRHVDTDTP--IVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPE  729 (856)
T ss_pred             HHHHHHHhcccCCCC--eEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCC
Confidence            5666766532   45  677888888899999999999999999999999999999999998 66999999999999987


Q ss_pred             CCCCCcHHHHHHHHH----HHccCCC-----CCC----ccccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHH
Q 048063           88 GNKLTDQKVINYIQQ----AIGTTGE-----IPS----SAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAAL  154 (484)
Q Consensus        88 g~~~~~~~~~~~L~~----~L~~~~~-----~~~----~~~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL  154 (484)
                      |. ...+++++.|++    +|.+...     .++    .....+++.|. |+++.+.++|+|+|.++||||||++|+++|
T Consensus       730 ~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L  807 (856)
T PRK03059        730 ED-VHYRDIINLVEHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVD-LRPDERGQYYILSVSANDRPGLLYAIARVL  807 (856)
T ss_pred             CC-CChHHHHHHHHHHHHHHHcCCCCcchhhcccccccccCCCCCceEE-EEEcCCCCEEEEEEEeCCcchHHHHHHHHH
Confidence            77 444456665554    5544321     011    00014567777 899888999999999999999999999999


Q ss_pred             HhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhc
Q 048063          155 ADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLR  206 (484)
Q Consensus       155 ~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~  206 (484)
                      +.+|+||++|+|+|.++++.|+|||++.    ++.+++++++|+++|.++|.
T Consensus       808 ~~~~l~I~~AkI~T~~~~v~DvF~V~~~----~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        808 AEHRVSVHTAKINTLGERVEDTFLIDGS----GLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             HHCCCeEEEEEEeecCCEEEEEEEEcCC----CCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999644    24567899999999998874

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=2.2e-25  Score=253.37  Aligned_cols=191  Identities=19%  Similarity=0.205  Sum_probs=164.8

Q ss_pred             ccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCC-eeEEEEEEEeCCCCCCCCChhHHHHH
Q 048063          119 YTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHND-RLACVAYVSDQSTDTPIDDPGRLATI  197 (484)
Q Consensus       119 ~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~-~~~dvF~V~~~~~g~~i~d~~~~~~l  197 (484)
                      ++.|. ++++++.++|+|+|+++||||||++|+++|+.+|+||++|+|+|.++ .+.|+|+|++. +|.++. ++++++|
T Consensus       688 ~p~V~-i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~-~g~~~~-~~~~~~I  764 (884)
T PRK05007        688 KPLVL-LSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEP-DGSPLS-QDRHQVI  764 (884)
T ss_pred             CCeEE-EEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECC-CCCCCC-HHHHHHH
Confidence            55666 88889999999999999999999999999999999999999999655 78899999998 788884 6799999


Q ss_pred             HHHHHHHhcccccCCCCcccccccccccCCCCCCCCccchhhhhhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 048063          198 EEYITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGM  277 (484)
Q Consensus       198 ~~~L~~~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (484)
                      ++.|.++|.++...   .. .      .              |+..      +   . .                 ..+.
T Consensus       765 ~~~L~~aL~~~~~~---~~-~------~--------------~~~~------~---~-~-----------------~~~~  793 (884)
T PRK05007        765 RKALEQALTQSSPQ---PP-K------P--------------RRLP------A---K-L-----------------RHFN  793 (884)
T ss_pred             HHHHHHHHcCCCCC---cc-c------c--------------cccc------c---c-c-----------------CCCC
Confidence            99999999886432   11 1      0              1110      0   0 0                 1367


Q ss_pred             cceEEEEeccCCCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHH
Q 048063          278 RRTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIK  357 (484)
Q Consensus       278 ~~p~V~v~n~~~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~  357 (484)
                      .+|.|.|+|..+..+|+|+|.++|||||+|+|+++|.++|++|..|+|+|.++.+.|+|||.+.+|.+++ +++.++|++
T Consensus       794 ~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~-~~~~~~l~~  872 (884)
T PRK05007        794 VPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALN-EELQQELRQ  872 (884)
T ss_pred             CCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCC-HHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999999999999999999999998 568899999


Q ss_pred             HHHHHHh
Q 048063          358 CLEAAIE  364 (484)
Q Consensus       358 ~L~~~l~  364 (484)
                      .|.+++.
T Consensus       873 ~L~~~l~  879 (884)
T PRK05007        873 RLTEALN  879 (884)
T ss_pred             HHHHHHh
Confidence            9888763

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.94  E-value=1.7e-25  Score=254.54  Aligned_cols=189  Identities=19%  Similarity=0.262  Sum_probs=159.6

Q ss_pred             hhhccccccc---CCceEEEEecCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEeeCC
Q 048063           12 EFDTLPERIY---GPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYIS-SDAGWFMDVFHVKDEH   87 (484)
Q Consensus        12 ~~~~l~~~~~---~p~~~V~i~~~~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~It-t~~g~~~d~F~V~d~~   87 (484)
                      ||.+++.+..   .|  .|.+++....+.++|+|+++||||||++||++|+.+|+||++|+|+ |.+|+++|+|+|++.+
T Consensus       642 ~h~~~~~~~~~~~~~--~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~  719 (850)
T TIGR01693       642 WHAESLRRALSSGGP--LALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLF  719 (850)
T ss_pred             HHHHHHHhcccCCCC--EEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCC
Confidence            6667766533   46  7888887668999999999999999999999999999999999995 7999999999999999


Q ss_pred             CCCCCcHHHHHHHHH----HHccCCC------CCC-----ccccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHH
Q 048063           88 GNKLTDQKVINYIQQ----AIGTTGE------IPS-----SAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISA  152 (484)
Q Consensus        88 g~~~~~~~~~~~L~~----~L~~~~~------~~~-----~~~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~  152 (484)
                      |.++.+++.++.|++    +|.+...      .+.     .....++++|. |+|+.+..+|+|+|.+.||||||++|++
T Consensus       720 g~~~~~~~~~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~d~~~s~~~t~~~v~~~DrpGll~~i~~  798 (850)
T TIGR01693       720 GSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVT-ILNTASRKATIMEVRALDRPGLLARVGR  798 (850)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHcCCCccccccccccCCcccccCCCCCCeEE-EccCCCCCeEEEEEEECCccHHHHHHHH
Confidence            988776666666555    4444211      000     00114678888 9999999999999999999999999999


Q ss_pred             HHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          153 ALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       153 vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      +|+++|+||++|+|.|.++++.|+|||++. .|.|+.+ ++++.|+++|.++|
T Consensus       799 ~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~-~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       799 TLEELGLSIQSAKITTFGEKAEDVFYVTDL-FGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             HHHHCCCeEEEEEEEecCccceeEEEEECC-CCCCCCH-HHHHHHHHHHHHHh
Confidence            999999999999999999999999999998 7999986 78899999998876

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=3e-25  Score=254.23  Aligned_cols=196  Identities=21%  Similarity=0.299  Sum_probs=163.7

Q ss_pred             hhhcccccccC--CceEEEEecCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEeeCCC
Q 048063           12 EFDTLPERIYG--PTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYIS-SDAGWFMDVFHVKDEHG   88 (484)
Q Consensus        12 ~~~~l~~~~~~--p~~~V~i~~~~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~It-t~~g~~~d~F~V~d~~g   88 (484)
                      ||.+++.+...  .+..|.+.+.+..+.++|+|+++||||||++||++|+.+|+||++|+|+ +.+|+++|+|+|++++|
T Consensus       705 ~h~~~~~~~~~~~~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g  784 (931)
T PRK05092        705 RHARFIRDADDAGRPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFG  784 (931)
T ss_pred             HHHHHHHhccccCCCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCC
Confidence            57777765431  1127778888888999999999999999999999999999999999985 48999999999999888


Q ss_pred             CCCCcHHHHHHHHHHHcc----CCC----C-CC------ccccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHH
Q 048063           89 NKLTDQKVINYIQQAIGT----TGE----I-PS------SAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAA  153 (484)
Q Consensus        89 ~~~~~~~~~~~L~~~L~~----~~~----~-~~------~~~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~v  153 (484)
                      .+..+++.++.|++.|..    ...    . ++      .....++|.|. |+|+.+..+|+|+|.+.||||||++|+++
T Consensus       785 ~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~-~~~~~s~~~t~i~I~~~DrpGLl~~I~~~  863 (931)
T PRK05092        785 RDEDEPRRLARLAKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVT-IDNEASNRFTVIEVNGRDRPGLLYDLTRA  863 (931)
T ss_pred             CCCCCHHHHHHHHHHHHHHHcCCCCCccccccccCccccccCCCCCCEEE-EeeCCCCCeEEEEEEECCcCcHHHHHHHH
Confidence            776666677766665533    211    0 00      00114578888 99999999999999999999999999999


Q ss_pred             HHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhcccc
Q 048063          154 LADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATA  209 (484)
Q Consensus       154 L~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~g~~  209 (484)
                      |+++|+||++|+|.|.++++.|+|||++. +|.++.+++++++|+++|.++|.++.
T Consensus       864 l~~~gl~I~~A~I~T~~~~~~D~F~v~d~-~g~~i~~~~~~~~l~~~L~~~L~~~~  918 (931)
T PRK05092        864 LSDLNLNIASAHIATYGERAVDVFYVTDL-FGLKITNEARQAAIRRALLAALAEGE  918 (931)
T ss_pred             HHHCCceEEEEEEEEcCCEEEEEEEEeCC-CCCcCCCHHHHHHHHHHHHHHhcCcc
Confidence            99999999999999999999999999998 79999888899999999999998754

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.94  E-value=6.6e-25  Score=249.53  Aligned_cols=183  Identities=22%  Similarity=0.289  Sum_probs=158.1

Q ss_pred             CCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCC-ChhHHHHHHHHHHHHhccc
Q 048063          131 SEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPID-DPGRLATIEEYITTVLRAT  208 (484)
Q Consensus       131 ~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~-d~~~~~~l~~~L~~~L~g~  208 (484)
                      .+.++|.|+++||||||++|+++|+.+|+||++|+|+| .++.+.|+|+|++. +|.++. +++++++|++.|.++|.|+
T Consensus       702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~-~g~~~~~~~~r~~~i~~~L~~~L~~~  780 (895)
T PRK00275        702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD-DGEPIGDNPARIEQIREGLTEALRNP  780 (895)
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC-CCCCccchHHHHHHHHHHHHHHHcCC
Confidence            58999999999999999999999999999999999988 45677899999998 688854 4589999999999999987


Q ss_pred             ccCCCCcccccccccccCCCCCCCCccchhhhhhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEEeccC
Q 048063          209 AERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYIESCE  288 (484)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~n~~  288 (484)
                      ...   ...+      +          .+..++.                               ..+..+|.|.++|..
T Consensus       781 ~~~---~~~~------~----------~~~~~~~-------------------------------~~~~~~~~V~i~~~~  810 (895)
T PRK00275        781 DDY---PTII------Q----------RRVPRQL-------------------------------KHFAFPTQVTISNDA  810 (895)
T ss_pred             Ccc---chhh------h----------hhhhhhc-------------------------------cCCCCCCEEEEEECC
Confidence            643   2222      1          0111111                               136677999999999


Q ss_pred             CCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHh
Q 048063          289 EKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIE  364 (484)
Q Consensus       289 ~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~  364 (484)
                      +.++|+|+|+++||||||++|+++|.++|+||.+|+|+|.+++++|+|||.+.+|.++.++.+.++|++.|.+.|.
T Consensus       811 ~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~  886 (895)
T PRK00275        811 QRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLD  886 (895)
T ss_pred             CCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999888999999999999999999888899999999999884

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1e-25  Score=243.23  Aligned_cols=164  Identities=25%  Similarity=0.383  Sum_probs=147.8

Q ss_pred             CcceEEEEeccCCCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEE-EecCCeEEEEEEEEccCCCCCCChhHHHHH
Q 048063          277 MRRTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASI-GCHGDYAFQEYFIRHIDGYALNTEGEKERV  355 (484)
Q Consensus       277 ~~~p~V~v~n~~~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i-~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l  355 (484)
                      ..+|.|.+++....+.++|+||++|+|.||+.++.++...|+||++|+| +|.+||++|+|+|.+++|.++. +.+...+
T Consensus       669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~dr~~~~  747 (867)
T COG2844         669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-EDRRAAL  747 (867)
T ss_pred             ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hhHHHHH
Confidence            4679999999999999999999999999999999999999999999999 7788999999999999999988 6688888


Q ss_pred             HHHHHHHHh---------hccC----------C----------ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeec
Q 048063          356 IKCLEAAIE---------RRVC----------E----------GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATK  406 (484)
Q Consensus       356 ~~~L~~~l~---------rr~~----------~----------~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~  406 (484)
                      +..|.+.+.         ++.+          +          .|+|||+|.||||||++++++|.+++++|++|||+|+
T Consensus       748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~  827 (867)
T COG2844         748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF  827 (867)
T ss_pred             HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence            888888872         1111          1          6999999999999999999999999999999999999


Q ss_pred             CCeeeeEEEEEcCCCCCCChHHHHHHHHHhCCCceE
Q 048063          407 GEKSVNAFYLRDISGNEVDMDFVESMKKEILGPIDL  442 (484)
Q Consensus       407 g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L~~~~~~  442 (484)
                      ||+|+|+|||++..|.+++.+.++.+.+.| .++++
T Consensus       828 GErveD~F~vt~~~~~~l~~~~~q~l~~~l-l~al~  862 (867)
T COG2844         828 GERVEDVFIVTDADGQALNAELRQSLLQRL-LEALL  862 (867)
T ss_pred             cccceeEEEEeccccccCCHHHHHHHHHHH-HHHhc
Confidence            999999999999999999998888888888 55443

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2e-25  Score=240.99  Aligned_cols=188  Identities=18%  Similarity=0.221  Sum_probs=158.0

Q ss_pred             hhhhcccccc--cCCceEEEEecCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEE-EecCCeEEEEEEEeeCC
Q 048063           11 PEFDTLPERI--YGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYI-SSDAGWFMDVFHVKDEH   87 (484)
Q Consensus        11 ~~~~~l~~~~--~~p~~~V~i~~~~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~I-tt~~g~~~d~F~V~d~~   87 (484)
                      -||++++.+.  .+|  .|.++..+..+.++|+|+++|+|.||+.+|+.+...|+||++|+| +|.+|+++|+|+|++++
T Consensus       658 awH~~~l~~~~~~~~--Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~  735 (867)
T COG2844         658 AWHARHLVRHDLGKP--LVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPD  735 (867)
T ss_pred             hHHHHHHHhhhccCc--ceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCC
Confidence            4888888876  367  888888888899999999999999999999999999999999998 77999999999999999


Q ss_pred             CCCCCcHHHHHHHHH----HHccC-CC----------CCCccccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHH
Q 048063           88 GNKLTDQKVINYIQQ----AIGTT-GE----------IPSSAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISA  152 (484)
Q Consensus        88 g~~~~~~~~~~~L~~----~L~~~-~~----------~~~~~~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~  152 (484)
                      |.++.. .+...+++    ++... ..          .++|   +++|+|. |.|..+...|+|+|.+.||||||+++++
T Consensus       736 g~~~~~-dr~~~~~~~l~~~l~s~~~~~~~~~r~~r~~~~f---~i~p~v~-i~~t~~~~~t~lEv~alDRpGLLa~v~~  810 (867)
T COG2844         736 GFPVEE-DRRAALRGELIEALLSGKAQPPRRRRIPRKLRHF---PIPPRVT-ILPTASNDKTVLEVRALDRPGLLAALAG  810 (867)
T ss_pred             CCccch-hHHHHHHHHHHHHHhcCCCCCccccccCccccee---ccCCcee-eccccCCCceEEEEEeCCcccHHHHHHH
Confidence            987763 34433333    33221 10          1244   6789999 9999999999999999999999999999


Q ss_pred             HHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhcc
Q 048063          153 ALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRA  207 (484)
Q Consensus       153 vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~g  207 (484)
                      +|++++++|++|+|.|.|+++.|+|||++. .|.++. ++..+.+.+.|.+++..
T Consensus       811 v~~dl~l~i~~AkItT~GErveD~F~vt~~-~~~~l~-~~~~q~l~~~ll~al~~  863 (867)
T COG2844         811 VFADLGLSLHSAKITTFGERVEDVFIVTDA-DGQALN-AELRQSLLQRLLEALLP  863 (867)
T ss_pred             HHHhcccceeeeeeccccccceeEEEEecc-ccccCC-HHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999 798885 45556666666666653

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=6.8e-25  Score=246.26  Aligned_cols=175  Identities=19%  Similarity=0.236  Sum_probs=146.6

Q ss_pred             cCCceEEEEecCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHH
Q 048063           21 YGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYI  100 (484)
Q Consensus        21 ~~p~~~V~i~~~~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L  100 (484)
                      .+|  .|.+.... .+.++|+|+++||||||++||++|+.+||||++|+|+|.+|+++|+|+|++++|.....+...+.|
T Consensus       586 ~~~--~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L  662 (774)
T PRK03381        586 GGV--HVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDL  662 (774)
T ss_pred             CCC--EEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHH
Confidence            456  78888878 899999999999999999999999999999999999889999999999999888754334455667


Q ss_pred             HHHHccCCC------CCC-----cc--ccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEE
Q 048063          101 QQAIGTTGE------IPS-----SA--VAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAW  167 (484)
Q Consensus       101 ~~~L~~~~~------~~~-----~~--~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~  167 (484)
                      +++|.+...      .+.     ..  ....++.|. ++++.+.++|+|+|.++||||||++|+++|+.+|+||++|+|+
T Consensus       663 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~  741 (774)
T PRK03381        663 RRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVL-WLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVA  741 (774)
T ss_pred             HHHHcCCCchhhhhhcccccccccccccCCCCcEEE-EEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEe
Confidence            777776411      000     00  014566777 8998888999999999999999999999999999999999999


Q ss_pred             ecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHH
Q 048063          168 SHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYIT  202 (484)
Q Consensus       168 T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~  202 (484)
                      |.++++.|+|||++. +|.+++++  .+.|+++|.
T Consensus       742 T~g~~a~D~F~V~d~-~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        742 TLGADVVDVFYVTGA-AGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             ecCCeEEEEEEEECC-CCCcCchH--HHHHHHHhh
Confidence            999999999999998 79999764  677777664

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.92  E-value=5.6e-24  Score=242.18  Aligned_cols=193  Identities=22%  Similarity=0.304  Sum_probs=164.0

Q ss_pred             cceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEE-ecCCeeEEEEEEEeCCCCCCCCChhHHHHHH
Q 048063          120 TNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAW-SHNDRLACVAYVSDQSTDTPIDDPGRLATIE  198 (484)
Q Consensus       120 ~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~-T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~  198 (484)
                      +.|. +++....+.|+|+|+++||||||++|+++|+.+|+||++|+|+ |.++.+.|+|||++. .|.++.+++++++|+
T Consensus       656 ~~v~-~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~-~g~~~~~~~~~~~i~  733 (850)
T TIGR01693       656 PLAL-IDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDL-FGSPPAAERVFQELL  733 (850)
T ss_pred             CEEE-EeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECC-CCCCCCcHHHHHHHH
Confidence            3454 7776678999999999999999999999999999999999999 578899999999998 788888778899999


Q ss_pred             HHHHHHhcccccCCCCcccccccccccCCCCCCCCccchhhhhhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 048063          199 EYITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMR  278 (484)
Q Consensus       199 ~~L~~~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (484)
                      +.|.++|.+....   ...+      ..+       .. ..|+.                               ..+..
T Consensus       734 ~~L~~~L~~~~~~---~~~~------~~~-------~~-~~~~~-------------------------------~~~~~  765 (850)
T TIGR01693       734 QGLVDVLAGLAKD---PDTI------SAR-------RA-RRRRL-------------------------------QHFAV  765 (850)
T ss_pred             HHHHHHHcCCCcc---cccc------ccc-------cC-Ccccc-------------------------------cCCCC
Confidence            9999999886432   1111      000       00 00000                               13677


Q ss_pred             ceEEEEeccCCCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHH
Q 048063          279 RTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKC  358 (484)
Q Consensus       279 ~p~V~v~n~~~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~  358 (484)
                      +|.|.|+|..+..+|+|.|.|+|||||+++|+++|.++|++|.+|+|+|.++.+.|+|||.+..|.|+++ ++.+.|++.
T Consensus       766 ~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~  844 (850)
T TIGR01693       766 PPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEV  844 (850)
T ss_pred             CCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999999999999887 688999999


Q ss_pred             HHHHH
Q 048063          359 LEAAI  363 (484)
Q Consensus       359 L~~~l  363 (484)
                      |.+++
T Consensus       845 L~~~l  849 (850)
T TIGR01693       845 LAASV  849 (850)
T ss_pred             HHHHh
Confidence            88765

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=3.3e-23  Score=237.52  Aligned_cols=195  Identities=23%  Similarity=0.378  Sum_probs=166.6

Q ss_pred             cceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHH
Q 048063          120 TNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIE  198 (484)
Q Consensus       120 ~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~  198 (484)
                      +.|. +.+....+.++|+|+++||||||++|+++|+.+|+||++|+|+| .++.+.|+|+|++. .|.++.+++++++|+
T Consensus       720 ~~v~-~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~-~g~~~~~~~~~~~l~  797 (931)
T PRK05092        720 LATE-VRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDA-FGRDEDEPRRLARLA  797 (931)
T ss_pred             cEEE-EEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECC-CCCCCCCHHHHHHHH
Confidence            4454 77777789999999999999999999999999999999999998 67778899999998 688877788999999


Q ss_pred             HHHHHHhcccccCCCCcccccccccccCCCCCCCCccchhhhhhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 048063          199 EYITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMR  278 (484)
Q Consensus       199 ~~L~~~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (484)
                      +.|.+++.|+...   ...+      ..             |+...     +   .                  ...+..
T Consensus       798 ~~L~~~l~~~~~~---~~~~------~~-------------r~~~~-----~---~------------------~~~~~~  829 (931)
T PRK05092        798 KAIEDALSGEVRL---PEAL------AK-------------RTKPK-----K---R------------------ARAFHV  829 (931)
T ss_pred             HHHHHHHcCCCCC---cccc------cc-------------ccCcc-----c---c------------------ccCCCC
Confidence            9999999887543   2222      11             00000     0   0                  013677


Q ss_pred             ceEEEEeccCCCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHH
Q 048063          279 RTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKC  358 (484)
Q Consensus       279 ~p~V~v~n~~~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~  358 (484)
                      +|.|.|+|..+.++++|+|+++||||||++|+++|.++|+||.+|+|.|.++++.|+|+|.+.+|.++.++++.++|++.
T Consensus       830 ~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~  909 (931)
T PRK05092        830 PPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRA  909 (931)
T ss_pred             CCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999888889999999


Q ss_pred             HHHHHh
Q 048063          359 LEAAIE  364 (484)
Q Consensus       359 L~~~l~  364 (484)
                      |.+.|.
T Consensus       910 L~~~L~  915 (931)
T PRK05092        910 LLAALA  915 (931)
T ss_pred             HHHHhc
Confidence            999884

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=3.3e-23  Score=234.38  Aligned_cols=181  Identities=20%  Similarity=0.200  Sum_probs=153.6

Q ss_pred             CCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhc
Q 048063          128 EYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLR  206 (484)
Q Consensus       128 ~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~  206 (484)
                      .+..+.++|.|+++||||||++||++|+.+|+||++|+|+| .++.+.|+|+|+++ .|.+   ..++.+|++.|.++|+
T Consensus       685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-~~~~---~~~~~~i~~~l~~~l~  760 (869)
T PRK04374        685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-DTYA---DGDPQRLAAALRQVLA  760 (869)
T ss_pred             ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-CCCC---hHHHHHHHHHHHHHHc
Confidence            56678999999999999999999999999999999999998 56778899999998 5654   3568899999999999


Q ss_pred             ccccCCCCcccccccccccCCCCCCCCccchhhhhhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEEec
Q 048063          207 ATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYIES  286 (484)
Q Consensus       207 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~n  286 (484)
                      |+...   .. +      ..             |+..      +.    .                 ..+..+|.|.++|
T Consensus       761 ~~~~~---~~-~------~~-------------~~~~------~~----~-----------------~~~~~~~~V~~~~  790 (869)
T PRK04374        761 GDLQK---VR-P------AR-------------RAVP------RQ----L-----------------RHFRFAPRVEFSE  790 (869)
T ss_pred             CCCCc---cc-c------cc-------------ccCc------cc----c-----------------cCCCCCCeEEEee
Confidence            87532   11 2      11             1100      00    0                 1477889999999


Q ss_pred             cCCCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHH
Q 048063          287 CEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAI  363 (484)
Q Consensus       287 ~~~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l  363 (484)
                      ..+.++|+|+|+++||||||++|+++|+++|+||..|+|+|.++++.|+|||.+.+|.++.++++ ++|++.|.+.|
T Consensus       791 ~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l  866 (869)
T PRK04374        791 SAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESAR-QALRDALCACL  866 (869)
T ss_pred             cCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999998877666 99999988875

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=5.3e-23  Score=233.07  Aligned_cols=184  Identities=20%  Similarity=0.227  Sum_probs=152.9

Q ss_pred             ecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063          125 FGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT  203 (484)
Q Consensus       125 ~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~  203 (484)
                      +.+....+.+.|.|+++||||||++||++|+.+|+||++|+|+| .++.+.|+|+|.++ .|. ..+++++++|++.|.+
T Consensus       670 ~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~i~~~l~~  747 (856)
T PRK03059        670 ARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINLVEHELAE  747 (856)
T ss_pred             EEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHHHHHHHHH
Confidence            55666778999999999999999999999999999999999987 56778899999997 555 4457899999999999


Q ss_pred             HhcccccCCCCcccccccccccCCCCCCCCccchhhhhhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcceEEE
Q 048063          204 VLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVY  283 (484)
Q Consensus       204 ~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~V~  283 (484)
                      +|.|+...   ...+      .              ||..      +.    .                 ..+..+|.|.
T Consensus       748 ~l~~~~~~---~~~~------~--------------~~~~------~~----~-----------------~~~~~~~~V~  777 (856)
T PRK03059        748 RLAEQAPL---PEPS------K--------------GRLS------RQ----V-----------------KHFPITPRVD  777 (856)
T ss_pred             HHcCCCCc---chhh------c--------------cccc------cc----c-----------------cCCCCCceEE
Confidence            99987543   1111      0              1100      00    0                 1367788999


Q ss_pred             EeccCCCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHH
Q 048063          284 IESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAI  363 (484)
Q Consensus       284 v~n~~~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l  363 (484)
                      ++|..+.++|+|+|+++||||||++|+++|+++|+||..|+|+|.++++.|+|||.   +.+..++++.++|++.|.+.+
T Consensus       778 ~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~---~~~~~~~~~~~~l~~~L~~~L  854 (856)
T PRK03059        778 LRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID---GSGLSDNRLQIQLETELLDAL  854 (856)
T ss_pred             EEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc---CCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999988899999999994   344556778899999988765

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.90  E-value=1.3e-22  Score=228.02  Aligned_cols=181  Identities=17%  Similarity=0.201  Sum_probs=148.8

Q ss_pred             ecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHH
Q 048063          125 FGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTV  204 (484)
Q Consensus       125 ~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~  204 (484)
                      +.+.. .+.++|.|+++||||||++|+++|+.+|+||++|+|+|.++.+.|+|+|+++ .|.+.    .++++++.|.++
T Consensus       592 ~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~-~~~~~----~~~~l~~~L~~~  665 (774)
T PRK03381        592 IAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR-FGSPP----DAALLRQDLRRA  665 (774)
T ss_pred             EeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcc----hHHHHHHHHHHH
Confidence            55666 8999999999999999999999999999999999999988889999999998 57543    368999999999


Q ss_pred             hcccccCCCCcccccccccccCCCCCCCCccchhhhhhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEE
Q 048063          205 LRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYI  284 (484)
Q Consensus       205 L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~V~v  284 (484)
                      |.|+...   ...+      ..             |+..+   ..+              +.       ..+..+|.|.+
T Consensus       666 L~~~~~~---~~~~------~~-------------~~~~~---~~~--------------~~-------~~~~~~~~v~~  699 (774)
T PRK03381        666 LDGDLDV---LARL------AA-------------REAAA---AAV--------------PV-------RRPAAPPRVLW  699 (774)
T ss_pred             HcCCCch---hhhh------hc-------------ccccc---ccc--------------cc-------ccCCCCcEEEE
Confidence            9985432   1111      00             00000   000              00       13677889999


Q ss_pred             eccCCCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHH
Q 048063          285 ESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCL  359 (484)
Q Consensus       285 ~n~~~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L  359 (484)
                      +|..+.++++|+|+++||||||++|+++|+++|+||.+|+|+|.+++++|+|||.+.+|.++.++  .+.|++.|
T Consensus       700 ~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L  772 (774)
T PRK03381        700 LDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAV  772 (774)
T ss_pred             EECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999988765  67777665

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.76  E-value=3.3e-18  Score=135.66  Aligned_cols=67  Identities=19%  Similarity=0.374  Sum_probs=63.9

Q ss_pred             ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCCh-HHHHHHHHHh
Q 048063          370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDM-DFVESMKKEI  436 (484)
Q Consensus       370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~-~~~~~l~~~L  436 (484)
                      .|+|||.+.||||||++|+++|+++|++|++|||+|+|++++|+|||++.+|.++.+ +.++.|+++|
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L   68 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSL   68 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence            478999999999999999999999999999999999999999999999999999975 6789999999

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.75  E-value=7.9e-18  Score=134.46  Aligned_cols=73  Identities=14%  Similarity=0.285  Sum_probs=70.4

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhc
Q 048063          133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLR  206 (484)
Q Consensus       133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~  206 (484)
                      +|+|+|.++||||||++|+++|+++|++|++|+|.|.|+++.|+|||++. +|.|+.++++.++|+++|.+++.
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~-~g~kl~~~~~~~~l~~~L~~al~   73 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHK-DGRTLSTEGERQRVIKCLEAAIE   73 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcC-CCCccCCHHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999999999999999999999 89999999999999999999885

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.73  E-value=3.1e-17  Score=130.10  Aligned_cols=69  Identities=26%  Similarity=0.320  Sum_probs=65.5

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHH
Q 048063          133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYIT  202 (484)
Q Consensus       133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~  202 (484)
                      +|+|+|.++||||||++|+++|+++|++|+.|+|.|.|++++|+|||++. .|.|+.+++++++|+++|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~-~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQ-LGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECC-CCCCCCCHHHHHHHHHHhc
Confidence            58999999999999999999999999999999999999999999999998 7999999888899988774

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.73  E-value=3.9e-17  Score=130.49  Aligned_cols=75  Identities=72%  Similarity=1.236  Sum_probs=72.3

Q ss_pred             eeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhhc
Q 048063          292 YSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERR  366 (484)
Q Consensus       292 ~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~rr  366 (484)
                      +|+|+|.|+|||||||+++++|+++|++|.+|+|+|.++.+.|+|||.+.+|.++.++.+.++|+++|.++++||
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~   75 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR   75 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence            589999999999999999999999999999999999999999999999999999999999999999999998764

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.69  E-value=1.1e-16  Score=127.87  Aligned_cols=65  Identities=18%  Similarity=0.340  Sum_probs=60.4

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEee--ecCCeeeeEEEEEcCCCCCCCh-HHHHHHHHHh
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVA--TKGEKSVNAFYLRDISGNEVDM-DFVESMKKEI  436 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~--T~g~~a~d~F~v~~~~g~~l~~-~~~~~l~~~L  436 (484)
                      |+|||.|.|||||||+|+++|+++|++|++|||+  |+|++++|+||| +.+|.++++ ++++.|+++|
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L   68 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARL   68 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHH
Confidence            5799999999999999999999999999999999  999999999999 888988865 5778888887

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.69  E-value=2e-16  Score=126.34  Aligned_cols=72  Identities=18%  Similarity=0.184  Sum_probs=67.7

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEE--ecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhcc
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAW--SHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRA  207 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~--T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~g  207 (484)
                      |+|+|.++|||||||+|+++|+++|++|++|+|.  |.|++++|+||| +. .|.++.++++.+.|+++|.+++..
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~-~g~kl~d~~~~~~L~~~L~~~l~~   74 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QS-DGKKIMDPKKQAALCARLREEMVC   74 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eC-CCCccCCHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999999999999999999  999999999999 66 688999999999999999998853

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.63  E-value=2.4e-15  Score=120.57  Aligned_cols=73  Identities=68%  Similarity=1.126  Sum_probs=68.5

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCC-CCCCCChhHHHHHHHHHHHHhcc
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQST-DTPIDDPGRLATIEEYITTVLRA  207 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~-g~~i~d~~~~~~l~~~L~~~L~g  207 (484)
                      |+|+|.++||||||++|+++|+.+|+||++|+++|.++.+.|+|+|+++ . |.++.+++++++|++.|.++|.|
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~-~~~~~~~~~~~~~~i~~~L~~~l~g   74 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE-ETGAPIDDPIRLASIEDRLDNVLRG   74 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC-cCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999999999999999999999999999999997 6 77787888999999999999875

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.62  E-value=7.2e-15  Score=138.39  Aligned_cols=144  Identities=11%  Similarity=0.156  Sum_probs=106.5

Q ss_pred             CCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHH--h--
Q 048063          289 EKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAI--E--  364 (484)
Q Consensus       289 ~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l--~--  364 (484)
                      +..+++|+++|+||||+++++++.|+++||||.+++++..+|+..-++.|   .+. +....+++.-...+.+.+  .  
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv---s~~-~~~~~~le~~L~~l~~~~~L~i~   80 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL---SGS-WNAITLIESTLPLKGAELDLLIV   80 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE---eCC-hhHHHHHHHHHHhhhhhcCeEEE
Confidence            45789999999999999999999999999999999999988854333333   443 233334444444444332  1  


Q ss_pred             -hcc-C-------CceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCC--eeeeEEEEE----cCCCCCCCh--H
Q 048063          365 -RRV-C-------EGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGE--KSVNAFYLR----DISGNEVDM--D  427 (484)
Q Consensus       365 -rr~-~-------~~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~--~a~d~F~v~----~~~g~~l~~--~  427 (484)
                       ++. .       .++.++|.+.|||||+++||++|+++||||.+.+..|+++  ...+.|.+.    -+.+..+..  +
T Consensus        81 v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~  160 (190)
T PRK11589         81 MKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQ  160 (190)
T ss_pred             EEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHH
Confidence             121 1       1489999999999999999999999999999999999996  577777654    334444433  3


Q ss_pred             HHHHHHHHh
Q 048063          428 FVESMKKEI  436 (484)
Q Consensus       428 ~~~~l~~~L  436 (484)
                      ..+.++.+|
T Consensus       161 ~l~~l~~eL  169 (190)
T PRK11589        161 AFKALCTEL  169 (190)
T ss_pred             HHHHHHHHh
Confidence            567888888

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.59  E-value=1.1e-14  Score=116.29  Aligned_cols=72  Identities=33%  Similarity=0.475  Sum_probs=65.7

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH-NDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~-~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      .+.|+|+++||||||++|+++|+.+|+||++|+|+|. ++.+.|+|+|++. .+.++.+++++++|++.|.++|
T Consensus         1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~-~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP-DGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC-CCCCCChHHHHHHHHHHHHhhC
Confidence            3689999999999999999999999999999999997 6889999999998 7888877889999999998764

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.55  E-value=7.3e-14  Score=131.59  Aligned_cols=159  Identities=14%  Similarity=0.170  Sum_probs=110.2

Q ss_pred             CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCcc
Q 048063           35 EDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSA  114 (484)
Q Consensus        35 ~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~  114 (484)
                      ..+.+|+++++|||||.++++++|+++||||.+++.+..+|.|.-++.|.   +.    +..++.|+..|........+.
T Consensus         6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs---~~----~~~~~~le~~L~~l~~~~~L~   78 (190)
T PRK11589          6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS---GS----WNAITLIESTLPLKGAELDLL   78 (190)
T ss_pred             ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe---CC----hhHHHHHHHHHHhhhhhcCeE
Confidence            36789999999999999999999999999999999999999988788874   22    346778888776543100110


Q ss_pred             ccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCC--eeEEEEEEEeCCCCCCCCChh
Q 048063          115 VAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHND--RLACVAYVSDQSTDTPIDDPG  192 (484)
Q Consensus       115 ~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~--~~~dvF~V~~~~~g~~i~d~~  192 (484)
                      ..-..+.-  -.....+..+.++|.+.|||||+++++++|+++|+||.+.+..|++.  ...+.|...-. -.-|-  ..
T Consensus        79 i~v~~~~~--~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~-v~lP~--~~  153 (190)
T PRK11589         79 IVMKRTTA--RPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQIT-AHSPA--SQ  153 (190)
T ss_pred             EEEEeccc--cccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEE-EEcCC--CC
Confidence            00000000  00011222589999999999999999999999999999999888764  33344544332 12121  12


Q ss_pred             HHHHHHHHHHHHh
Q 048063          193 RLATIEEYITTVL  205 (484)
Q Consensus       193 ~~~~l~~~L~~~L  205 (484)
                      ..+.|+++|.+..
T Consensus       154 ~~~~L~~~l~~l~  166 (190)
T PRK11589        154 DAANIEQAFKALC  166 (190)
T ss_pred             CHHHHHHHHHHHH
Confidence            3577888877644

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.54  E-value=5.3e-14  Score=113.40  Aligned_cols=71  Identities=18%  Similarity=0.374  Sum_probs=64.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhcc
Q 048063          135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRA  207 (484)
Q Consensus       135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~g  207 (484)
                      +++|+++||||||++|+++|+.+|+||++|+|+| .++.+.|+|||++. .+. ..+++++++++++|.++|..
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHch
Confidence            6899999999999999999999999999999997 88999999999997 565 45678999999999998854

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.48  E-value=4.8e-14  Score=127.57  Aligned_cols=143  Identities=18%  Similarity=0.230  Sum_probs=108.0

Q ss_pred             CCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCChhHHHHHHHHHHHHH----
Q 048063          289 EKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGD-YAFQEYFIRHIDGYALNTEGEKERVIKCLEAAI----  363 (484)
Q Consensus       289 ~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g-~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l----  363 (484)
                      ++.|++|+++|+||||+...+++...++||||.++|+++.++ ++    .++...|. |+...+++.-.+.|.+..    
T Consensus         2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a----~i~lisgs-~dav~~le~~l~~l~~~~~L~v   76 (176)
T COG2716           2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFA----GIMLISGS-WDAVTLLEATLPLLGAELDLLV   76 (176)
T ss_pred             CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhccee----EEEEEeeC-HHHHHHHHHHhhcccccCCeEE
Confidence            356799999999999999999999999999999999988887 55    45555665 444445555555555432    


Q ss_pred             --hhccC-------CceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe--eeeEEEEEcCCCCCCCh------
Q 048063          364 --ERRVC-------EGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK--SVNAFYLRDISGNEVDM------  426 (484)
Q Consensus       364 --~rr~~-------~~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~--a~d~F~v~~~~g~~l~~------  426 (484)
                        .|..+       .+|.++|.+.|||||+.+||++|.++||+|++....|+.+.  ....|.+.=.-+-|.+.      
T Consensus        77 ~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~  156 (176)
T COG2716          77 VMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALR  156 (176)
T ss_pred             EEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHH
Confidence              12211       27999999999999999999999999999999999999755  56688874333334432      


Q ss_pred             HHHHHHHHHh
Q 048063          427 DFVESMKKEI  436 (484)
Q Consensus       427 ~~~~~l~~~L  436 (484)
                      ++.++++.+|
T Consensus       157 ~~f~al~~~L  166 (176)
T COG2716         157 DAFEALCDEL  166 (176)
T ss_pred             HHHHHHHHhh
Confidence            2446677766

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.48  E-value=3.2e-13  Score=108.27  Aligned_cols=71  Identities=17%  Similarity=0.278  Sum_probs=66.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccC-CCCCCChhHHHHHHHHHHHHH
Q 048063          293 SIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHID-GYALNTEGEKERVIKCLEAAI  363 (484)
Q Consensus       293 t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~-g~~~~~~~~~e~l~~~L~~~l  363 (484)
                      |+|+|+++||||||++++++|+++||||.+|+|+|.+++++|+|+|.+.+ |.++.++.+.+++++.|.+.+
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l   72 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL   72 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence            57999999999999999999999999999999988899999999999988 888888889999999998865

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.47  E-value=3.9e-13  Score=107.41  Aligned_cols=70  Identities=23%  Similarity=0.333  Sum_probs=64.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEec-CCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHH
Q 048063          293 SIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCH-GDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAA  362 (484)
Q Consensus       293 t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~-~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~  362 (484)
                      +.|+|+++||||||++++++|+.+|+||.+|+|.|. +|+++|+|+|.+.+|.++.++++.+++++.|.+.
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~   72 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDA   72 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhh
Confidence            689999999999999999999999999999999655 6899999999999999888888889999988765

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.44  E-value=8.5e-13  Score=106.38  Aligned_cols=69  Identities=19%  Similarity=0.378  Sum_probs=62.6

Q ss_pred             EEEEEeCCCCchHHHHHHHHhhCCceEEEEEEE-ecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHH
Q 048063          294 IVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIG-CHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAI  363 (484)
Q Consensus       294 ~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~-t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l  363 (484)
                      .++|+++||||||++++++|+++|+||.+|+|. |.+|+++|+|+|.+.+|. ..++.+.+++++.|.+++
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L   71 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVL   71 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999996 588999999999998877 556678899999998876

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.41  E-value=1.5e-12  Score=102.11  Aligned_cols=53  Identities=25%  Similarity=0.378  Sum_probs=49.5

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEE-EecCCeEEEEEEEeeCCCCC
Q 048063           38 TVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYI-SSDAGWFMDVFHVKDEHGNK   90 (484)
Q Consensus        38 t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~I-tt~~g~~~d~F~V~d~~g~~   90 (484)
                      .+|+|+++||||||++++++|+.+|+||++|+| +|.+|+++|+|+|++.+|..
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~   55 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE   55 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc
Confidence            589999999999999999999999999999998 66899999999999988763

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.34  E-value=1e-11  Score=112.64  Aligned_cols=160  Identities=13%  Similarity=0.165  Sum_probs=119.0

Q ss_pred             CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCcc
Q 048063           35 EDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSA  114 (484)
Q Consensus        35 ~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~  114 (484)
                      .++.+|+++++||||+...+|+...++||||++++++..++.+.-+..+.   |.    |+....++++|......-...
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis---gs----~dav~~le~~l~~l~~~~~L~   75 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS---GS----WDAVTLLEATLPLLGAELDLL   75 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe---eC----HHHHHHHHHHhhcccccCCeE
Confidence            35789999999999999999999999999999999999988887666654   33    678899999987653200110


Q ss_pred             cc--ccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC--CeeEEEEEEEeCCCCCCCCC
Q 048063          115 VA--KTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN--DRLACVAYVSDQSTDTPIDD  190 (484)
Q Consensus       115 ~~--~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~--~~~~dvF~V~~~~~g~~i~d  190 (484)
                      ..  +..+++.    ...+..+.+.|.+.||||++.+++.+|..+|+||.+....|+.  +.-.-.|+.+-. -..|.. 
T Consensus        76 v~m~rt~~~~~----~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it-~~lPa~-  149 (176)
T COG2716          76 VVMKRTGAHPT----PANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQIT-ARLPAN-  149 (176)
T ss_pred             EEEeecCCCcc----CCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhh-ccCCCc-
Confidence            00  1111121    3456789999999999999999999999999999999988843  233467776654 355552 


Q ss_pred             hhHHHHHHHHHHHHhcccc
Q 048063          191 PGRLATIEEYITTVLRATA  209 (484)
Q Consensus       191 ~~~~~~l~~~L~~~L~g~~  209 (484)
                       ..+..|+++|++ |.++.
T Consensus       150 -~~i~~l~~~f~a-l~~~L  166 (176)
T COG2716         150 -LSISALRDAFEA-LCDEL  166 (176)
T ss_pred             -CcHHHHHHHHHH-HHHhh
Confidence             567889999877 44443

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.33  E-value=9e-12  Score=97.69  Aligned_cols=64  Identities=14%  Similarity=0.211  Sum_probs=54.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHhhCCceEEEEEE-EecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHH
Q 048063          293 SIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASI-GCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAA  362 (484)
Q Consensus       293 t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i-~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~  362 (484)
                      ..|+|+++||||||++++.+|..+|+||++|+| ++.+|+++|+|+|++.+|.      ..+.+.++|+++
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~------~~~~~~~~~~~~   66 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG------ETAALGHALQKE   66 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc------chHHHHHHHHHh
Confidence            479999999999999999999999999999999 6778999999999998886      334455555544

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.30  E-value=2.4e-11  Score=96.88  Aligned_cols=67  Identities=24%  Similarity=0.451  Sum_probs=60.6

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHH
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYIT  202 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~  202 (484)
                      +.|+|.++||||+|++|+++|+.+|+||++|+++|.++.+.|+|+|++. ++.++ +++++++++++|-
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~-~~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA-NGNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECC-CCCcC-CHHHHHHHHHHhc
Confidence            6899999999999999999999999999999999988888899999998 68777 6778888887764

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.27  E-value=3.6e-11  Score=95.79  Aligned_cols=70  Identities=57%  Similarity=0.954  Sum_probs=64.4

Q ss_pred             ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHhCCCc
Q 048063          370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEILGPI  440 (484)
Q Consensus       370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L~~~~  440 (484)
                      ++.++|.+.||||+|++|+.+|+++|+||.+|++.|.++.+.|+|+|.+.+|.+++++..++++++| |.+
T Consensus         1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l-~~~   70 (72)
T cd04926           1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEI-GPA   70 (72)
T ss_pred             CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHh-ccc
Confidence            3679999999999999999999999999999999999889999999999999888667889999999 853

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.24  E-value=1.1e-10  Score=129.35  Aligned_cols=145  Identities=15%  Similarity=0.159  Sum_probs=119.0

Q ss_pred             EEEEEEe-cCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCcccc
Q 048063           38 TVVKVDS-VSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVA  116 (484)
Q Consensus        38 t~I~V~~-~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~~  116 (484)
                      ..++|.. +|++|++.+++++|+.+|++|.+|++.+ +|.++..|.|....|.+..+....+.++.++.+...  ..  .
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~  621 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELP--DP--A  621 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCC--cc--c
Confidence            4777777 9999999999999999999999999988 788889999998778876665666777777766542  11  1


Q ss_pred             ccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHH
Q 048063          117 KTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLAT  196 (484)
Q Consensus       117 ~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~  196 (484)
                      .-||.+. |..      ++++|.+.||||+|+.++++|.    .|..|++.|.|..++|+||+...         ....+
T Consensus       622 ~~~~~~~-~~~------~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~~---------~~r~~  681 (693)
T PRK00227        622 PGITATF-WHG------NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKPG---------FDRAT  681 (693)
T ss_pred             CCCCceE-eeC------cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecCc---------ccHHH
Confidence            3356665 543      8999999999999999999999    89999999999999999999843         12367


Q ss_pred             HHHHHHHHhcc
Q 048063          197 IEEYITTVLRA  207 (484)
Q Consensus       197 l~~~L~~~L~g  207 (484)
                      +++++..+|.+
T Consensus       682 ~~~~~~~~~~~  692 (693)
T PRK00227        682 VERDVTRVLAG  692 (693)
T ss_pred             HHHHHHHHHhc
Confidence            88888888764

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.20  E-value=1.5e-10  Score=91.00  Aligned_cols=70  Identities=34%  Similarity=0.570  Sum_probs=63.4

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      |.|.|.+.|+||+|++|+++|+.+|+||.++++.|.++.+.|+|++++. .+.+. +.+++++|+++|.+++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~-~~~~~-~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA-DGQPL-DPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC-CCCcC-CHHHHHHHHHHHHhhC
Confidence            5789999999999999999999999999999999988889999999998 67774 5689999999988764

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.08  E-value=1.1e-09  Score=86.03  Aligned_cols=69  Identities=22%  Similarity=0.375  Sum_probs=62.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHH
Q 048063          293 SIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAA  362 (484)
Q Consensus       293 t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~  362 (484)
                      |.|.|+++|+||+|++++++|.+++++|.++++.+.+++++++|++.+.+|.+ .+.++.+++++.|.+.
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~-~~~~~~~~i~~~l~~~   69 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-LDPERQEALRAALGEA   69 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhh
Confidence            47899999999999999999999999999999988778999999999999988 4557889999988765

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=98.98  E-value=4.1e-09  Score=116.90  Aligned_cols=120  Identities=15%  Similarity=0.159  Sum_probs=99.0

Q ss_pred             eEEEEEe-CCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHh--hccC-
Q 048063          293 SIVSVDC-KDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIE--RRVC-  368 (484)
Q Consensus       293 t~V~V~~-~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~--rr~~-  368 (484)
                      -.++|.. +|++|++.++...|+-++++|..|++.+ +|.+...|.|....|.+.+...-.+.++..+.-.+.  ...| 
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT  625 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence            3566666 9999999999999999999999999988 888889999999999887765333444443333321  1112 


Q ss_pred             C----ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEE
Q 048063          369 E----GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLR  417 (484)
Q Consensus       369 ~----~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~  417 (484)
                      +    ++++||.+.||||+|+.|+++|.    .|.+|+++|.|..+.|.||+.
T Consensus       626 ~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~  674 (693)
T PRK00227        626 ATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK  674 (693)
T ss_pred             ceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec
Confidence            2    68999999999999999999999    899999999999999999997

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.89  E-value=2e-08  Score=78.45  Aligned_cols=70  Identities=40%  Similarity=0.647  Sum_probs=60.8

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      +.|.|.++|+||+|++|+++|+.+|++|.++.+.+.++...++|++..+ .+.+. +++++++|++.|.+++
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~~~~l~~~l~~~~   70 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRPL-DPERIARLEEALEDAL   70 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCcC-CHHHHHHHHHHHHhhC
Confidence            3688999999999999999999999999999999987788899999987 56664 4578899999887653

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.76  E-value=7.5e-08  Score=75.11  Aligned_cols=66  Identities=35%  Similarity=0.658  Sum_probs=59.3

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI  436 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L  436 (484)
                      +.|.|.+.|+||+|++|+.+|.++|++|.++++.|.++...++|++.+.++...++++++.+++.|
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l   66 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEAL   66 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHH
Confidence            368999999999999999999999999999999998889999999999887776666778888877

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.53  E-value=3.8e-06  Score=71.78  Aligned_cols=114  Identities=18%  Similarity=0.196  Sum_probs=84.7

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCccccc
Q 048063           38 TVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAK  117 (484)
Q Consensus        38 t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~~~  117 (484)
                      -+|.|+..|+||-++..+..|.++|+||..-.|.-.+.+-+-.+.|.++           +.-.++|.+.    .|.   
T Consensus         4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-----------d~A~~~Lee~----gF~---   65 (142)
T COG4747           4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-----------DEAHSVLEEA----GFT---   65 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-----------HHHHHHHHHC----CcE---
Confidence            3789999999999999999999999999977775555555655666432           2223344432    462   


Q ss_pred             cccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeeEEEEEEEe
Q 048063          118 TYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH-NDRLACVAYVSD  181 (484)
Q Consensus       118 ~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~-~~~~~dvF~V~~  181 (484)
                          |.        ..-++-|...|+||-|+.|+++|.++++|+..+..|+. ...+.-+|.+.+
T Consensus        66 ----Vr--------~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed  118 (142)
T COG4747          66 ----VR--------ETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED  118 (142)
T ss_pred             ----EE--------eeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence                22        23577888899999999999999999999999999984 455655555443

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.53  E-value=8.5e-07  Score=71.31  Aligned_cols=65  Identities=25%  Similarity=0.447  Sum_probs=54.9

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      +.+|++.++||||++++++++|+++|+||.+.+..+.++.+.-.+.|+-+        +...++|+++|.+..
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~   66 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELA   66 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999988888765        356788888887754

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.50  E-value=1e-06  Score=70.86  Aligned_cols=63  Identities=17%  Similarity=0.244  Sum_probs=51.5

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063           37 CTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT  106 (484)
Q Consensus        37 ~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~  106 (484)
                      ...|++.++||||+++.++++|+++|+||.+.+.++.+|.+.-.+.|.-+       ++..+.++++|..
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~   64 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEE   64 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999888888643       4466777777754

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.47  E-value=4.2e-07  Score=68.77  Aligned_cols=66  Identities=18%  Similarity=0.383  Sum_probs=55.7

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063           38 TVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT  106 (484)
Q Consensus        38 t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~  106 (484)
                      ++|+|.|||+.||-.++|+++.+.|++|..+.++|++.|++-+|+|...... +  .-+|+.|++.|.+
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~-~--~~rW~lLK~RL~~   66 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPS-I--KVRWDLLKNRLMS   66 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCC-C--cccHHHHHHHHHh
Confidence            4799999999999999999999999999999999999999999999854322 1  2366777776654

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.38  E-value=3.6e-06  Score=64.71  Aligned_cols=62  Identities=24%  Similarity=0.374  Sum_probs=47.8

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCC--eeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHH
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHND--RLACVAYVSDQSTDTPIDDPGRLATIEEYITTV  204 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~--~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~  204 (484)
                      |.|.|.++||||+|++++.+|+++|+||..+.+.+.++  ....++.+.+         ....+++.++|+++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~   64 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEAL   64 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHcc
Confidence            57899999999999999999999999999999999766  3333333333         24556777776653

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.29  E-value=4.6e-06  Score=67.22  Aligned_cols=40  Identities=13%  Similarity=0.233  Sum_probs=37.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeE
Q 048063          293 SIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYA  332 (484)
Q Consensus       293 t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a  332 (484)
                      ++|.+.||||||+++++++.|+++||||.+++.++.++..
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F   41 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEF   41 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEE
Confidence            6899999999999999999999999999999998777744

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.28  E-value=3.9e-06  Score=67.64  Aligned_cols=47  Identities=17%  Similarity=0.211  Sum_probs=42.4

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEe
Q 048063           38 TVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVK   84 (484)
Q Consensus        38 t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~   84 (484)
                      .+|++.|+||||+.++++++|+++|+||.+++.+..+|++.-.+.+.
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~   48 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVE   48 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEE
Confidence            57899999999999999999999999999999988888886666665

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.25  E-value=3.4e-06  Score=67.49  Aligned_cols=65  Identities=15%  Similarity=0.192  Sum_probs=50.3

Q ss_pred             EEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCCh--HHHHHHHHHh
Q 048063          372 RLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDM--DFVESMKKEI  436 (484)
Q Consensus       372 ~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~--~~~~~l~~~L  436 (484)
                      +++|.+.|||||+++||++|+++|+||...+.++.++.-.-.|.+.-+++..++.  +..+.+.+++
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~l~~~l   67 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFKAHEL   67 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            3789999999999999999999999999999899987767777776554433322  2445555555

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.24  E-value=4.6e-06  Score=66.78  Aligned_cols=65  Identities=23%  Similarity=0.250  Sum_probs=53.0

Q ss_pred             EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhc
Q 048063          135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLR  206 (484)
Q Consensus       135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~  206 (484)
                      +|+|.++||||++++++++|+++|+||.+.+..+.++.+.-.|.+.-+ .+      ...+.|+++|.....
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~------~~~~~l~~~l~~l~~   65 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DS------ADSEALLKDLLFKAH   65 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CC------CCHHHHHHHHHHHHH
Confidence            378999999999999999999999999999988888888888887765 22      134777777776543

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.24  E-value=2.4e-06  Score=65.68  Aligned_cols=46  Identities=20%  Similarity=0.428  Sum_probs=39.6

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEE
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYL  416 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v  416 (484)
                      |.|.|.+.||||+|++|+++|+++|+||.++.+.+.++.....|..
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~   46 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIV   46 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEE
Confidence            6799999999999999999999999999999999988753333333

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.95  E-value=3.1e-05  Score=58.80  Aligned_cols=67  Identities=15%  Similarity=0.230  Sum_probs=59.2

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHH
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTV  204 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~  204 (484)
                      ++|+|.++|+.||=.++++++.+.|++|..+.+.|.|....-+|+|...  ..++  +-+|..|++.|..+
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~--~~~~--~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR--PPSI--KVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC--CCCC--cccHHHHHHHHHhc
Confidence            5799999999999999999999999999999999999999999999865  3333  46899999998765

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.93  E-value=3.4e-05  Score=63.61  Aligned_cols=66  Identities=21%  Similarity=0.340  Sum_probs=52.3

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      .+|++.|+||||++++|+++|+++|+||.+...++.++.+.-.+.+.-+  +..    ...+.|+++|....
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~~~----~~~~~L~~~l~~l~   67 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--ESN----LDFAELQEELEELG   67 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--CCC----CCHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999987777666666644  101    12477888777744

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.85  E-value=5e-05  Score=62.66  Aligned_cols=66  Identities=12%  Similarity=0.187  Sum_probs=48.3

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCC-CCCCCh--HHHHHHHHHh
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDIS-GNEVDM--DFVESMKKEI  436 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~-g~~l~~--~~~~~l~~~L  436 (484)
                      +.+++.|.||||++++||++|+++|+||...+..+.+.+..-.+.+.-+. +..++.  +..+.+.+.+
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~   70 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEELGKEL   70 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence            57999999999999999999999999999999998776655555554332 222222  2345566666

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=97.83  E-value=6.1e-05  Score=62.26  Aligned_cols=69  Identities=20%  Similarity=0.356  Sum_probs=51.3

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhccc
Q 048063          133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRAT  208 (484)
Q Consensus       133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~g~  208 (484)
                      .++|+|.++||||++++++++|+++|+||.+....+.++.+.-.+.+.-+  +.+.    ..+.|++.|.+ +.+.
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~----~~~~l~~~l~~-l~~~   71 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKK----DFAELKEELEE-LGKE   71 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCC----CHHHHHHHHHH-HHHH
Confidence            67999999999999999999999999999999988876655554444433  2111    23677777766 4443

>PRK07431 aspartate kinase; Provisional

Probab=97.80  E-value=0.021  Score=63.29  Aligned_cols=287  Identities=11%  Similarity=0.147  Sum_probs=158.1

Q ss_pred             ecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCccccccccce
Q 048063           44 SVSKQGLLLEMVQVLTDMNLTISKSYISS-DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAKTYTNK  122 (484)
Q Consensus        44 ~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~~~~~~~v  122 (484)
                      .++++|+++++...|+++|+||.--..+. ..+..--.|.|.+.+-     ....+.|++ |....   .      ...+
T Consensus       278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~~-l~~~~---~------~~~i  342 (587)
T PRK07431        278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAEA-IAPAL---G------GAEV  342 (587)
T ss_pred             CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHHH-HHHHc---C------CCcE
Confidence            57889999999999999999998654332 2332233466643111     111122221 22111   0      1123


Q ss_pred             eeecCCCCCCeEEEEEEec---CCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHH
Q 048063          123 AVFGSEYPSEHTAIEMTGT---DRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEE  199 (484)
Q Consensus       123 ~v~~~~~~~~~t~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~  199 (484)
                      . +    ..+...|.|.+.   ++||+++++..+|++.|++|....  +..  ..-.|.|..          ...++..+
T Consensus       343 ~-~----~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sSe--~~Is~vv~~----------~d~~~av~  403 (587)
T PRK07431        343 L-V----ETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TSE--VKVSCVIDA----------EDGDKALR  403 (587)
T ss_pred             E-E----eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCC--CEEEEEEcH----------HHHHHHHH
Confidence            2 2    235678888885   899999999999999999997665  322  122233322          23456666


Q ss_pred             HHHHHhcccccCCCCcccccccccccCCCCCCCCccchhhhhhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 048063          200 YITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRR  279 (484)
Q Consensus       200 ~L~~~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (484)
                      .|++.+.-+..    ...++                        +++     +                      .....
T Consensus       404 ~Lh~~f~~~~~----~~~~~------------------------~~~-----~----------------------~~~~~  428 (587)
T PRK07431        404 AVCEAFELEDS----QIEIN------------------------PTA-----S----------------------GQDEP  428 (587)
T ss_pred             HHHHHhccCCc----ccccC------------------------ccc-----c----------------------CCCCC
Confidence            77777743321    11121                        000     0                      01111


Q ss_pred             eEEEEeccCCCceeEEEE-EeCCCCchHHHHHHHHhhCCceEEEEEEEe-cC--CeEEEEEEEEccCCCCCCChhHHHHH
Q 048063          280 TAVYIESCEEKGYSIVSV-DCKDRPRLMFDTVCTLTDMQYVVFHASIGC-HG--DYAFQEYFIRHIDGYALNTEGEKERV  355 (484)
Q Consensus       280 p~V~v~n~~~~~~t~V~V-~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t-~~--g~a~d~f~V~~~~g~~~~~~~~~e~l  355 (484)
                      +.--|..  ..+...|.+ ..++.+|+++++...|++.|++|..-..+. .+  |..--+|.+...+      ..+.+.+
T Consensus       429 ~v~gIa~--~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~------~~~~~~~  500 (587)
T PRK07431        429 EVRGVAL--DRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKED------REAAQKV  500 (587)
T ss_pred             cEEEEEc--cCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHH------HHHHHHH
Confidence            1111211  123334433 367889999999999999999998765432 22  1222234442211      1122222


Q ss_pred             HHHHHHHHhh----ccCCceEEEEEec---CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeE-EEEEcCCCCCCChH
Q 048063          356 IKCLEAAIER----RVCEGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNA-FYLRDISGNEVDMD  427 (484)
Q Consensus       356 ~~~L~~~l~r----r~~~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~-F~v~~~~g~~l~~~  427 (484)
                      .+.|...+..    -...-..|.|.+.   .+||+++++..+|.+.||+++....     ..... |+|...+.    ++
T Consensus       501 l~~l~~~~~~~~i~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~-----S~~~Is~vV~~~~~----~~  571 (587)
T PRK07431        501 LRELAKQLPGAEVEDGPAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIAT-----SEIRTSCVVAEDDG----VK  571 (587)
T ss_pred             HHHHHHhcCCceEEEeCCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeec-----cceEEEEEEeHHHH----HH
Confidence            2223222210    0122477888886   7899999999999999999977662     33444 55532211    23


Q ss_pred             HHHHHHHHh
Q 048063          428 FVESMKKEI  436 (484)
Q Consensus       428 ~~~~l~~~L  436 (484)
                      .+..|.+++
T Consensus       572 av~~Lh~~f  580 (587)
T PRK07431        572 ALQAVHQAF  580 (587)
T ss_pred             HHHHHHHHh
Confidence            556666666

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.80  E-value=0.00013  Score=58.69  Aligned_cols=64  Identities=22%  Similarity=0.334  Sum_probs=46.4

Q ss_pred             EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC------CeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN------DRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~------~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      +|+|.++|+||++++|+++|+++|+||.+....|.+      +.+.-.+.+.-+ .+      ....+++++|....
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~------~~~~~l~~~l~~l~   70 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AG------TDLDALREELEELC   70 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CC------CCHHHHHHHHHHHH
Confidence            378999999999999999999999999999999865      223333333332 11      12467777776633

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.79  E-value=0.00012  Score=58.20  Aligned_cols=67  Identities=21%  Similarity=0.259  Sum_probs=46.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      +|+|.++||||++++|+++|+++|+||.+.+.++..+.  ..|+..-. ...|-. ....+.|+++|....
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~--~~f~~~~~-~~~~~~-~~~~~~l~~~l~~l~   67 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDS--GRFFMRVE-FELEGF-DLSREALEAAFAPVA   67 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCC--CeEEEEEE-EEeCCC-CCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999998873222  23544332 111110 013577888777644

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.73  E-value=0.00021  Score=57.57  Aligned_cols=48  Identities=21%  Similarity=0.236  Sum_probs=39.8

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecC------CeEEEEEEEeeC
Q 048063           39 VVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDA------GWFMDVFHVKDE   86 (484)
Q Consensus        39 ~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~------g~~~d~F~V~d~   86 (484)
                      +|+|.++|+||+.++++++|+++|+||.+.+..+.+      +.+.-.+.+.-+
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p   54 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP   54 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC
Confidence            378999999999999999999999999999987754      555555666544

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK00194 hypothetical protein; Validated

Probab=97.71  E-value=0.00011  Score=60.70  Aligned_cols=47  Identities=11%  Similarity=0.222  Sum_probs=39.3

Q ss_pred             ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEE
Q 048063          370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYL  416 (484)
Q Consensus       370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v  416 (484)
                      .+.+++.+.||||++++|+++|+++|+||...+-.+.++...-.+.+
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v   49 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLV   49 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEE
Confidence            36899999999999999999999999999999988876544443333

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.67  E-value=0.00019  Score=57.03  Aligned_cols=35  Identities=17%  Similarity=0.291  Sum_probs=32.5

Q ss_pred             EEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEec
Q 048063          294 IVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCH  328 (484)
Q Consensus       294 ~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~  328 (484)
                      +|.|.|+||||+++++++.|+++||||.+.+..+.
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~   35 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVD   35 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeec
Confidence            47899999999999999999999999999999763

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.65  E-value=0.00036  Score=56.21  Aligned_cols=64  Identities=20%  Similarity=0.309  Sum_probs=47.8

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec--CCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHH
Q 048063          132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH--NDRLACVAYVSDQSTDTPIDDPGRLATIEEYIT  202 (484)
Q Consensus       132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~--~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~  202 (484)
                      -.+.|.|.+.||||+|++|+.++++.|+||.+..+.+.  ++.+.-.|.+.-.       +.+++..|-+.|+
T Consensus         5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~   70 (80)
T PF13291_consen    5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLR   70 (80)
T ss_dssp             EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHC
T ss_pred             EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999984  4556666666544       3556666655543

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.57  E-value=0.0023  Score=64.35  Aligned_cols=115  Identities=11%  Similarity=0.045  Sum_probs=69.7

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc-CCCCCCccc
Q 048063           39 VVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSD--AGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT-TGEIPSSAV  115 (484)
Q Consensus        39 ~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~--~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~-~~~~~~~~~  115 (484)
                      .|+|.|+|||||.++++++|+++|+||++.+.+.+  +|++.-.+.+.-+.. ..+    .+.|+++|.. ...  .+  
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~-~~~----~~~l~~~l~~~~~~--~~--   72 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGF-RLE----ESSLLAAFKSALAE--KF--   72 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCC-CCC----HHHHHHHHHHHHHH--Hh--
Confidence            68999999999999999999999999999998774  477776666653321 122    2344444433 210  11  


Q ss_pred             cccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063          116 AKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS  168 (484)
Q Consensus       116 ~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T  168 (484)
                         .-.+. +.+....  ..|-|.+.-+-.=|.+|......-.+++.-+-+.+
T Consensus        73 ---~l~i~-l~~~~~~--~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~vis  119 (280)
T TIGR00655        73 ---EMTWE-LILADKL--KRVAILVSKEDHCLGDLLWRWYSGELDAEIALVIS  119 (280)
T ss_pred             ---CCEEE-EecCCCC--cEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEE
Confidence               11222 3322222  23444444445567777777766666655555544

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.55  E-value=0.0017  Score=65.42  Aligned_cols=118  Identities=9%  Similarity=0.057  Sum_probs=65.1

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE--ecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCcc
Q 048063           37 CTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYIS--SDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSA  114 (484)
Q Consensus        37 ~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~It--t~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~  114 (484)
                      ..+|+|.|+|||||.++++++|+++|+||++.+.+  +..|.++-.+.+.+......+    .+.|+++|.....  .+ 
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~----~~~l~~~l~~l~~--~l-   81 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAAS----VDTFRQEFQPVAE--KF-   81 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCC----HHHHHHHHHHHHH--Hh-
Confidence            46899999999999999999999999999999975  334444333333322111122    2444444433110  01 


Q ss_pred             ccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063          115 VAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS  168 (484)
Q Consensus       115 ~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T  168 (484)
                          ...+. +.+....  ..|-|.+.-+..=|.+|........++..-+-+.+
T Consensus        82 ----~l~~~-i~~~~~~--~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~vis  128 (289)
T PRK13010         82 ----DMQWA-IHPDGQR--PKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIIS  128 (289)
T ss_pred             ----CCeEE-EecCCCC--eEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEE
Confidence                11122 2222222  23333334445556666666666666555555544

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.50  E-value=0.0044  Score=53.40  Aligned_cols=112  Identities=18%  Similarity=0.162  Sum_probs=78.1

Q ss_pred             EEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhhccCCceEE
Q 048063          294 IVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERRVCEGVRL  373 (484)
Q Consensus       294 ~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~rr~~~~t~l  373 (484)
                      +|.|+..++||-+..+++.|.+.|+||..-.|.-.+++-+--.+|-.           -++-.+.|+++= =.....-++
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~-----------~d~A~~~Lee~g-F~Vr~~dVl   72 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDR-----------PDEAHSVLEEAG-FTVRETDVL   72 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCC-----------hHHHHHHHHHCC-cEEEeeeEE
Confidence            68899999999999999999999999999999666655433333322           122333344320 000013567


Q ss_pred             EEEecCCcchHHHHHHHHHhCCceEEEEEeeec-CCeeeeEEEEE
Q 048063          374 ELCAANRVGLLSDITRVLRENGLAVVRAHVATK-GEKSVNAFYLR  417 (484)
Q Consensus       374 eV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~-g~~a~d~F~v~  417 (484)
                      -|+..|+||=|+.|+.+|.+++||+.++-.-+. .++|.-.|.+.
T Consensus        73 aVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~e  117 (142)
T COG4747          73 AVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVE  117 (142)
T ss_pred             EEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhh
Confidence            788899999999999999999999988766543 34455555443

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.50  E-value=0.0019  Score=65.08  Aligned_cols=49  Identities=12%  Similarity=0.185  Sum_probs=42.5

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEe
Q 048063           36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS--DAGWFMDVFHVK   84 (484)
Q Consensus        36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt--~~g~~~d~F~V~   84 (484)
                      ....|+|.|+|||||.++++++|+++|+||.+.+.++  .+|.+.-.+.+.
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~   55 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFE   55 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEE
Confidence            3578999999999999999999999999999999888  777766555554

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.49  E-value=0.00013  Score=57.54  Aligned_cols=67  Identities=21%  Similarity=0.332  Sum_probs=51.0

Q ss_pred             EEEEEecCCcchHHHHHHHHHhCCceEEEEEeeec--CCeeeeE--EEEEcCCCCCCCh-----HHHHHHHHHhCCC
Q 048063          372 RLELCAANRVGLLSDITRVLRENGLAVVRAHVATK--GEKSVNA--FYLRDISGNEVDM-----DFVESMKKEILGP  439 (484)
Q Consensus       372 ~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~--g~~a~d~--F~v~~~~g~~l~~-----~~~~~l~~~L~~~  439 (484)
                      .||+++..||-.+||+|-+|+.++++|++|+|..+  +++.+.+  |.+.+. ++.++.     ...+.++..|||+
T Consensus         2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~-~~~~~~~~~r~~i~drv~~~lmgw   77 (77)
T cd04898           2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH-DRLKLGGRQRSKVVDRVTKTLMGW   77 (77)
T ss_pred             cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC-CccccchHHHHHHHHHHHHHHhcC
Confidence            38999999999999999999999999999999854  5665554  556554 333552     2446777778775

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.46  E-value=0.0011  Score=53.32  Aligned_cols=63  Identities=17%  Similarity=0.302  Sum_probs=49.3

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063           38 TVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS--DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT  106 (484)
Q Consensus        38 t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt--~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~  106 (484)
                      +.|.|.+.||||++++|+.++++.|+||.+..+.+  .++.+.-.|.|.-      .+.+.++.|.+.|..
T Consensus         7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V------~d~~~L~~ii~~L~~   71 (80)
T PF13291_consen    7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV------KDLEHLNQIIRKLRQ   71 (80)
T ss_dssp             EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE------SSHHHHHHHHHHHCT
T ss_pred             EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE------CCHHHHHHHHHHHHC
Confidence            58899999999999999999999999999999866  4788777777753      334566777777754

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.40  E-value=0.00025  Score=58.23  Aligned_cols=68  Identities=18%  Similarity=0.267  Sum_probs=52.4

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhc
Q 048063          133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLR  206 (484)
Q Consensus       133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~  206 (484)
                      ..+|+|.+.||||+.+.++++|+++|+||++-.-.-..+...-.+.|.-+  ..    ......+++.|.+...
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~--~~----~~d~~~lr~~l~~~~~   70 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS--KE----VVDFAALRDELAAEGK   70 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC--hH----hccHHHHHHHHHHHHH
Confidence            57899999999999999999999999999998766677777777776543  11    2334677777666553

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.39  E-value=0.0016  Score=51.34  Aligned_cols=61  Identities=15%  Similarity=0.218  Sum_probs=46.3

Q ss_pred             EEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063          136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH-NDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT  203 (484)
Q Consensus       136 i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~-~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~  203 (484)
                      |.|.+.||||+|++|+.++++.|+||.+....+. .+.+...|.+.-.       +.++++.+.+.|++
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-------~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-------SEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-------CHHHHHHHHHHHhc
Confidence            6889999999999999999999999999888764 3455555655543       34566776666544

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.26  E-value=0.00036  Score=57.37  Aligned_cols=48  Identities=19%  Similarity=0.304  Sum_probs=42.5

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEe
Q 048063           37 CTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVK   84 (484)
Q Consensus        37 ~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~   84 (484)
                      ..+|||.++||||+.+.++++|+++|.||++-..+--+|++--.+.|.
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~   50 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVD   50 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEc
Confidence            468999999999999999999999999999988777888887666664

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.24  E-value=0.0032  Score=49.57  Aligned_cols=61  Identities=10%  Similarity=0.177  Sum_probs=47.5

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063           40 VKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS-DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT  106 (484)
Q Consensus        40 I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~  106 (484)
                      |.|.++||||+|++|+.++++.|.||.+....+ .+|++...|.+.-      .+.+.++.+.+.|..
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev------~~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA------PSEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc------CCHHHHHHHHHHHhc
Confidence            678999999999999999999999999888754 4677766666642      234566777777754

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.20  E-value=0.011  Score=59.58  Aligned_cols=116  Identities=9%  Similarity=0.013  Sum_probs=67.3

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCcc
Q 048063           37 CTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS--DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSA  114 (484)
Q Consensus        37 ~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt--~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~  114 (484)
                      ...|+|.|+||||+.++++++|+++|+||.+.+.++  .++.+.-.+.+..+.+.  +    .+.|+++|.....  .+ 
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~--~----~~~L~~~L~~l~~--~l-   77 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL--D----EDALRAGFAPIAA--RF-   77 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC--C----HHHHHHHHHHHHH--Hh-
Confidence            468999999999999999999999999999999754  45666655565434332  1    2444444333210  00 


Q ss_pred             ccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063          115 VAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS  168 (484)
Q Consensus       115 ~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T  168 (484)
                          ...+. +.+.....  .|-|.+.-+---|..+........++..-+-+.|
T Consensus        78 ----~l~i~-i~~~~~~~--ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~vis  124 (286)
T PRK13011         78 ----GMQWE-LHDPAARP--KVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS  124 (286)
T ss_pred             ----CcEEE-EeecccCc--eEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEE
Confidence                11122 22222221  2333333345556666666666665555555544

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.18  E-value=0.0095  Score=60.10  Aligned_cols=40  Identities=15%  Similarity=0.192  Sum_probs=37.0

Q ss_pred             ceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEe--cCC
Q 048063          291 GYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGC--HGD  330 (484)
Q Consensus       291 ~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t--~~g  330 (484)
                      .+.+|+|.|+||||++++++++|+++||||.+.+.++  .+|
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g   46 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETG   46 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCC
Confidence            4678999999999999999999999999999999987  556

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.10  E-value=0.011  Score=59.82  Aligned_cols=35  Identities=9%  Similarity=0.175  Sum_probs=33.1

Q ss_pred             eeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEE
Q 048063          292 YSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIG  326 (484)
Q Consensus       292 ~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~  326 (484)
                      ..+|+|.|+||||+++.++..|+++|+||.+.+..
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~   43 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF   43 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence            35899999999999999999999999999999995

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.10  E-value=0.012  Score=59.21  Aligned_cols=101  Identities=13%  Similarity=0.156  Sum_probs=61.0

Q ss_pred             EEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecC--CeEEEEEEEEccCCCCCCChhHHHHHHHHHHH----HHh---
Q 048063          294 IVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHG--DYAFQEYFIRHIDGYALNTEGEKERVIKCLEA----AIE---  364 (484)
Q Consensus       294 ~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~--g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~----~l~---  364 (484)
                      +|+|.|+||||+++.++..|+++|+||.+.+.+...  |+.. +.+..+..+..++    ++++++.|++    .+.   
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~-mr~~v~~~~~~~~----~~~l~~~l~~~~~~~~~l~i   76 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFF-MRVEFQLEGFRLE----ESSLLAAFKSALAEKFEMTW   76 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEE-EEEEEEeCCCCCC----HHHHHHHHHHHHHHHhCCEE
Confidence            589999999999999999999999999999997643  5332 1112222221122    4455555444    331   


Q ss_pred             --hccCCceEEEEEecCCcchHHHHHHHHHhCCceEE
Q 048063          365 --RRVCEGVRLELCAANRVGLLSDITRVLRENGLAVV  399 (484)
Q Consensus       365 --rr~~~~t~leV~a~DRpGLL~~It~~f~~~gi~I~  399 (484)
                        +...+...|=|-+--+..-|.+|-.......++..
T Consensus        77 ~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~  113 (280)
T TIGR00655        77 ELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAE  113 (280)
T ss_pred             EEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcE
Confidence              11112334444444555566777777766655433

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.06  E-value=0.0055  Score=47.26  Aligned_cols=33  Identities=27%  Similarity=0.445  Sum_probs=29.5

Q ss_pred             EEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063          136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWS  168 (484)
Q Consensus       136 i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T  168 (484)
                      +.|..+|+||+|++|+.+|+++|+||.+.....
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~   33 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDR   33 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEe
Confidence            357889999999999999999999999888665

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.05  E-value=0.0032  Score=63.45  Aligned_cols=68  Identities=12%  Similarity=0.243  Sum_probs=49.5

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC--CeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhc
Q 048063          132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN--DRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLR  206 (484)
Q Consensus       132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~--~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~  206 (484)
                      ..++|+|.++||||+.++|+++|+++|+||.+...+|..  +.+.-.+.+..+ .+      ...+.|+++|.+...
T Consensus         6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p-~~------~~~~~L~~~L~~l~~   75 (286)
T PRK13011          6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE-EG------LDEDALRAGFAPIAA   75 (286)
T ss_pred             ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC-CC------CCHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999987533  333334444333 12      125778888777443

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.01  E-value=0.0028  Score=50.38  Aligned_cols=35  Identities=20%  Similarity=0.269  Sum_probs=32.7

Q ss_pred             EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec
Q 048063          135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH  169 (484)
Q Consensus       135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~  169 (484)
                      .|.|.+.||+|+|++|+.+++..|+||.+..+.+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~   36 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK   36 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence            47899999999999999999999999999998775

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.00  E-value=0.0052  Score=49.43  Aligned_cols=64  Identities=8%  Similarity=0.076  Sum_probs=47.7

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEE-ecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHH
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAW-SHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTV  204 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~-T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~  204 (484)
                      ..|.+...|+||+|++|+++|+..|.||.+..+. |......-+..+...       ++...+.|...|.+.
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~-------~~~~i~qi~kQL~KL   67 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC-------TENEATLLVSQLKKL   67 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC-------CHHHHHHHHHHHhCC
Confidence            4689999999999999999999999999999987 444445444333333       245667777776654

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.99  E-value=0.005  Score=47.70  Aligned_cols=45  Identities=11%  Similarity=0.183  Sum_probs=37.4

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEE
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVS  180 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~  180 (484)
                      ..+.|..+|+||.|++|+.+|+++|+||.+..++..++.  -++.+.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~   46 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI   46 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence            467889999999999999999999999999998876554  344443

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.91  E-value=0.0041  Score=60.98  Aligned_cols=47  Identities=17%  Similarity=0.272  Sum_probs=39.7

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEE
Q 048063           36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS--DAGWFMDVFH   82 (484)
Q Consensus        36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt--~~g~~~d~F~   82 (484)
                      ...++++.|+|++||.++|++.|+++||||.++..++  ..|+++-...
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~   54 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVE   54 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEE
Confidence            4579999999999999999999999999999999876  3566654433

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.87  E-value=0.0037  Score=46.63  Aligned_cols=46  Identities=20%  Similarity=0.209  Sum_probs=38.4

Q ss_pred             EEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeeEEEEEEEe
Q 048063          136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN-DRLACVAYVSD  181 (484)
Q Consensus       136 i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~-~~~~dvF~V~~  181 (484)
                      |.|...|+||.|++++.+|.++|+||.+..++..+ +.+.-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            45788999999999999999999999999988755 56666666544

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.85  E-value=0.0083  Score=48.27  Aligned_cols=61  Identities=8%  Similarity=0.095  Sum_probs=44.0

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDISGNEVDMDFVESMKKEI  436 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~g~~l~~~~~~~l~~~L  436 (484)
                      +.+.+...|+||+|+.|+.+|+..|+||.+..+.-..+. ...+..+...     ++...+++..+|
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~-----~~~~i~qi~kQL   64 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC-----TENEATLLVSQL   64 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC-----CHHHHHHHHHHH
Confidence            578999999999999999999999999999998733333 4444344332     233455666655

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.82  E-value=0.0081  Score=50.32  Aligned_cols=67  Identities=15%  Similarity=0.252  Sum_probs=48.8

Q ss_pred             CCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          131 SEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       131 ~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      ....+|.+...|+||+|++|++.|+..|.||.+..+.- ......-+..+...        +..++++...|.+..
T Consensus         6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~--------~~~i~Qi~kQL~KLi   73 (96)
T PRK08178          6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND--------DQRLEQMISQIEKLE   73 (96)
T ss_pred             CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC--------chHHHHHHHHHhCCc
Confidence            34577999999999999999999999999999998774 33333333323221        246778877776644

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.77  E-value=0.0077  Score=46.64  Aligned_cols=45  Identities=24%  Similarity=0.370  Sum_probs=37.6

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEE
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLR  417 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~  417 (484)
                      +.+.|...|+||.|++|+.+|.++|+||.+.-+...+++  -+|.+.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~   46 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI   46 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence            458899999999999999999999999999988766553  455553

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.71  E-value=0.0089  Score=48.84  Aligned_cols=66  Identities=15%  Similarity=0.223  Sum_probs=48.6

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      ..|.+...|+||.|++|+++|+..|+||.+..+.. ....+..+-.+...  |    |+..++++...|.+..
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~--~----d~~~ieqI~kQL~Kli   69 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI--Q----DDTSLHILIKKLKQQI   69 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC--C----CHHHHHHHHHHHhCCc
Confidence            46889999999999999999999999999999885 44444433333331  2    3566778877776644

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.69  E-value=0.012  Score=54.98  Aligned_cols=66  Identities=11%  Similarity=0.136  Sum_probs=47.4

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      ..+.|.+.|+||+|++|+++|+.+|+||.+..+.+....-..-+.+.-+  +    ++..++.|+++|.+..
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~----~~~~ieqL~kQL~KLi   68 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--G----DDRTIEQLTKQLYKLV   68 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--C----CHHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999987522222223333322  2    1234678888887755

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.68  E-value=0.013  Score=46.14  Aligned_cols=62  Identities=13%  Similarity=0.229  Sum_probs=44.6

Q ss_pred             EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeeEEEEEEEeCCCCCCCCChh-HHHHHHHHHHH
Q 048063          135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN-DRLACVAYVSDQSTDTPIDDPG-RLATIEEYITT  203 (484)
Q Consensus       135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~-~~~~dvF~V~~~~~g~~i~d~~-~~~~l~~~L~~  203 (484)
                      .+.|.+.|+||+|++|+.+|+++|+||......+.. +.+.-.|.+...       +.+ .+.+|-+.|++
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHhc
Confidence            578999999999999999999999999998865533 444455555433       223 55666655543

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.66  E-value=0.014  Score=45.27  Aligned_cols=36  Identities=19%  Similarity=0.302  Sum_probs=32.6

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH  169 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~  169 (484)
                      +.+.|..+|+||.|+++++.|+++|+||.+......
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~   37 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI   37 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence            568889999999999999999999999998887764

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.66  E-value=0.012  Score=45.13  Aligned_cols=59  Identities=20%  Similarity=0.351  Sum_probs=42.7

Q ss_pred             EEEEEecCCcchHHHHHHHHHhCCceEEEEEeeec-CCe-eeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063          372 RLELCAANRVGLLSDITRVLRENGLAVVRAHVATK-GEK-SVNAFYLRDISGNEVDMDFVESMKKEI  436 (484)
Q Consensus       372 ~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~-g~~-a~d~F~v~~~~g~~l~~~~~~~l~~~L  436 (484)
                      .+.+.+.|+||+|++|+.+|+++|++|.+....+. ++. +.=.|.+ +..    + +..+.+..+|
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~----~-~~~~~l~~~l   62 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVV-EGD----D-DVIEQIVKQL   62 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEE-ECC----H-HHHHHHHHHH
Confidence            47899999999999999999999999999998775 333 3333334 321    2 4455555655

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=96.63  E-value=0.015  Score=44.76  Aligned_cols=61  Identities=15%  Similarity=0.203  Sum_probs=42.8

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-----CCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063           40 VKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSD-----AGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT  106 (484)
Q Consensus        40 I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~-----~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~  106 (484)
                      +.|..+|+||+|++++.+|+.+|+||.+......     .++..-.|.+...      +.+.++.+.+.|..
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~------~~~~l~~l~~~l~~   66 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR------GAEHIEEIIAALRE   66 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC------CHHHHHHHHHHHHH
Confidence            3578899999999999999999999998776432     4555544555421      23355666666654

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.60  E-value=0.014  Score=47.04  Aligned_cols=51  Identities=18%  Similarity=0.309  Sum_probs=40.2

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCC-eeeeEEEEEcCCCC
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGE-KSVNAFYLRDISGN  422 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~-~a~d~F~v~~~~g~  422 (484)
                      +.+.+...|+||.|++|...|+++|+||.+......+. ...=.|+|.. +|.
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~-~~~   53 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF-EGH   53 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE-ECC
Confidence            45778889999999999999999999999998776654 3445777743 454

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.60  E-value=0.0042  Score=49.22  Aligned_cols=66  Identities=21%  Similarity=0.386  Sum_probs=48.4

Q ss_pred             EEEEEeCCCCchHHHHHHHHhhCCceEEEEEE--EecCCeEEEEEEEEccCCC-CCCChhHHHHHHHHH
Q 048063          294 IVSVDCKDRPRLMFDTVCTLTDMQYVVFHASI--GCHGDYAFQEYFIRHIDGY-ALNTEGEKERVIKCL  359 (484)
Q Consensus       294 ~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i--~t~~g~a~d~f~V~~~~g~-~~~~~~~~e~l~~~L  359 (484)
                      .|++.|+-||..|||+|-+|+.+++.|++|+|  ...++.-+..|-++..++. .+........+...+
T Consensus         2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv   70 (77)
T cd04898           2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRV   70 (77)
T ss_pred             cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHH
Confidence            37889999999999999999999999999999  4455677888777765443 344333344444333

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.59  E-value=0.0067  Score=45.21  Aligned_cols=46  Identities=24%  Similarity=0.431  Sum_probs=38.6

Q ss_pred             EEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC-CeeeeEEEEEc
Q 048063          373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKG-EKSVNAFYLRD  418 (484)
Q Consensus       373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g-~~a~d~F~v~~  418 (484)
                      +++...|+||.|++++..|.++|+||.+..+...+ +.+.-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            46788999999999999999999999999987665 56666676644

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.59  E-value=0.0071  Score=56.45  Aligned_cols=35  Identities=17%  Similarity=0.348  Sum_probs=33.1

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeee
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVAT  405 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T  405 (484)
                      +.+.|.+.|+||+|+.|+.+|+++|+||.+..+..
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~   37 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP   37 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence            57999999999999999999999999999999965

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.58  E-value=0.021  Score=43.76  Aligned_cols=61  Identities=18%  Similarity=0.291  Sum_probs=43.2

Q ss_pred             EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHH
Q 048063          135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH-NDRLACVAYVSDQSTDTPIDDPGRLATIEEYIT  202 (484)
Q Consensus       135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~-~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~  202 (484)
                      .+.+.+.|+||+|++|+.+|+++|+||.+....+. ++.....++..+.      .+ ...+.+.+.|.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~l~~~l~   63 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG------DD-DVIEQIVKQLN   63 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC------CH-HHHHHHHHHHh
Confidence            46788999999999999999999999999998775 4443333333322      12 44556665554

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.57  E-value=0.0074  Score=47.29  Aligned_cols=62  Identities=18%  Similarity=0.269  Sum_probs=43.1

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCC-eeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGE-KSVNAFYLRDISGNEVDMDFVESMKKEI  436 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~-~a~d~F~v~~~~g~~l~~~~~~~l~~~L  436 (484)
                      |.+.|.+.|+||+|.+|+.+|.++|++|.+....+..+ ......+++..    .+.++.+++.+.|
T Consensus         1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~----~~~~~l~~~i~~L   63 (79)
T cd04881           1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE----TSEAALNAALAEI   63 (79)
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc----CCHHHHHHHHHHH
Confidence            45889999999999999999999999999998765432 22223333322    2344555666666

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.55  E-value=0.019  Score=44.92  Aligned_cols=62  Identities=21%  Similarity=0.269  Sum_probs=42.5

Q ss_pred             EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCC-eeEEEEEEEeCCCCCCCCChhHHHHHHHHHH
Q 048063          135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHND-RLACVAYVSDQSTDTPIDDPGRLATIEEYIT  202 (484)
Q Consensus       135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~-~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~  202 (484)
                      -|.|.+.|+||+|++++.+|+.+|+||......+..+ ....+..++..      .+...++.+.+.|.
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~------~~~~~l~~~i~~L~   64 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE------TSEAALNAALAEIE   64 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc------CCHHHHHHHHHHHH
Confidence            4788899999999999999999999999998765432 33333333333      12445555555544

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.53  E-value=0.0069  Score=59.42  Aligned_cols=37  Identities=30%  Similarity=0.619  Sum_probs=35.2

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063          132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS  168 (484)
Q Consensus       132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T  168 (484)
                      ..+++++.|+|+|||.++|++.|+++|+||.++.-++
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~   42 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD   42 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccc
Confidence            5689999999999999999999999999999999886

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.43  E-value=0.0099  Score=46.17  Aligned_cols=47  Identities=11%  Similarity=0.290  Sum_probs=37.6

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC--CeeeeEEEEE
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKG--EKSVNAFYLR  417 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g--~~a~d~F~v~  417 (484)
                      +.+.|...|+||.|++++++|+++|++|.+.......  ....-.|.+.
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~   50 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK   50 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence            5688999999999999999999999999988766652  2344456664

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.43  E-value=0.023  Score=52.20  Aligned_cols=64  Identities=16%  Similarity=0.232  Sum_probs=47.9

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeeE-EEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN-DRLA-CVAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~-~~~~-dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      .+|.|...|+||.|++|+++|+.+|+||.+..+.... .... -+|.|.    +    ++...+.|...|.+..
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~----~----d~~~i~qi~kQl~Kli   67 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV----G----DDKVLEQITKQLNKLV   67 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE----C----CHHHHHHHHHHHhcCc
Confidence            4688999999999999999999999999999887654 3333 334332    2    2456778888877644

acetohydroxyacid synthase is a synonym.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.38  E-value=0.021  Score=46.73  Aligned_cols=63  Identities=16%  Similarity=0.159  Sum_probs=44.6

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI  436 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L  436 (484)
                      ..+.+...|+||+|+.|+..|.+.|+||.+..+...-....-.+-++-..|.   +...+++..+|
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d---~~~ieqI~kQL   65 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD---DTSLHILIKKL   65 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC---HHHHHHHHHHH
Confidence            4688999999999999999999999999999988554443333333221122   33455666666

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.38  E-value=0.026  Score=51.99  Aligned_cols=64  Identities=14%  Similarity=0.233  Sum_probs=48.0

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeeE-EEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN-DRLA-CVAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~-~~~~-dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      ..|.|...|+||.|++|+++|+.+|+||.+..+.... .... -+|.+. .       ++..++++...|.+..
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~-~-------~~~~i~qi~kQl~KLi   68 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS-G-------DEQVIEQITKQLNKLI   68 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE-C-------CHHHHHHHHHHHhccc
Confidence            4688999999999999999999999999999877543 3333 334332 2       2466788888877654

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.34  E-value=0.026  Score=43.37  Aligned_cols=36  Identities=19%  Similarity=0.485  Sum_probs=32.5

Q ss_pred             EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC
Q 048063          135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN  170 (484)
Q Consensus       135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~  170 (484)
                      .+.+.++|+||.|++++..|+++++||.+....+..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~   37 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER   37 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence            578899999999999999999999999998877653

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.30  E-value=0.022  Score=47.73  Aligned_cols=71  Identities=20%  Similarity=0.239  Sum_probs=50.3

Q ss_pred             ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCee-eeEEEEEcCCCCCCChHHHHHHHHHhCCC--ceEEeec
Q 048063          370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKS-VNAFYLRDISGNEVDMDFVESMKKEILGP--IDLAVKN  446 (484)
Q Consensus       370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a-~d~F~v~~~~g~~l~~~~~~~l~~~L~~~--~~~~~~~  446 (484)
                      .+.|.+...|+||+|+.|+..|++.|+||.+..+.-..... ..+..+..  +    ++..+++..+| -.  .++.+..
T Consensus         8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~----~~~i~Qi~kQL-~KLidVikV~~   80 (96)
T PRK08178          8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D----DQRLEQMISQI-EKLEDVLKVRR   80 (96)
T ss_pred             CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C----chHHHHHHHHH-hCCcCEEEEEE
Confidence            57899999999999999999999999999999987555543 44444433  2    23456666666 22  3555544


Q ss_pred             C
Q 048063          447 D  447 (484)
Q Consensus       447 ~  447 (484)
                      -
T Consensus        81 l   81 (96)
T PRK08178         81 N   81 (96)
T ss_pred             C
Confidence            3

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.30  E-value=0.026  Score=43.00  Aligned_cols=44  Identities=16%  Similarity=0.307  Sum_probs=37.0

Q ss_pred             EEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC--CeeeeEEEE
Q 048063          373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKG--EKSVNAFYL  416 (484)
Q Consensus       373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g--~~a~d~F~v  416 (484)
                      +.|.+.|+||+|++|+++|.++|++|.+..+...+  +.+.-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            67899999999999999999999999999987764  344445555

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.28  E-value=0.052  Score=43.67  Aligned_cols=49  Identities=16%  Similarity=0.286  Sum_probs=39.7

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeeEEEEEEEeC
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN-DRLACVAYVSDQ  182 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~-~~~~dvF~V~~~  182 (484)
                      +.+.+..+|+||.|+++..+|+++|+||.+....... +...-+|+|...
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~   51 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE   51 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE
Confidence            4577788999999999999999999999999877643 345567777664

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.23  E-value=0.016  Score=44.24  Aligned_cols=44  Identities=18%  Similarity=0.234  Sum_probs=36.8

Q ss_pred             EEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC--CeeEEEEEE
Q 048063          136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN--DRLACVAYV  179 (484)
Q Consensus       136 i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~--~~~~dvF~V  179 (484)
                      +.|.+.|+||++++|+.+|+++|+||.+..+....  +...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            57889999999999999999999999999988754  444455555

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=96.20  E-value=0.036  Score=43.91  Aligned_cols=59  Identities=12%  Similarity=0.266  Sum_probs=42.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063           39 VVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT  106 (484)
Q Consensus        39 ~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~  106 (484)
                      .+.|.+.||+|++++|+.++++.|.||....+.+. +...  |.+.      +.+...++.+.+.|..
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~--l~i~------v~~~~~L~~li~~L~~   60 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIY--LNFP------TIEFEKLQTLMPEIRR   60 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEE--EEeE------ecCHHHHHHHHHHHhC
Confidence            47899999999999999999999999999998665 5422  3332      1123455666666654

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.18  E-value=0.029  Score=51.50  Aligned_cols=71  Identities=17%  Similarity=0.294  Sum_probs=49.0

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHhCCC--ceEEeec
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEILGP--IDLAVKN  446 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L~~~--~~~~~~~  446 (484)
                      +.++|...|+||.|++|+..|+++|+||.+..+....+...-.+.++- +|   ++...+++..+| -.  .++.+..
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V-~~---d~~~i~qi~kQl-~Kli~V~~V~~   74 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVV-VG---DDKVLEQITKQL-NKLVDVIKVSD   74 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEE-EC---CHHHHHHHHHHH-hcCccEEEEEe
Confidence            578999999999999999999999999999988766533333233221 13   244556666666 22  4556654

acetohydroxyacid synthase is a synonym.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.15  E-value=0.033  Score=42.61  Aligned_cols=33  Identities=18%  Similarity=0.373  Sum_probs=30.5

Q ss_pred             EEEEecCCcchHHHHHHHHHhCCceEEEEEeee
Q 048063          373 LELCAANRVGLLSDITRVLRENGLAVVRAHVAT  405 (484)
Q Consensus       373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T  405 (484)
                      +.+.+.|+||+|++|+.+|.++|++|.+.....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~   34 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR   34 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence            678999999999999999999999999988765

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=96.11  E-value=0.046  Score=48.85  Aligned_cols=42  Identities=24%  Similarity=0.369  Sum_probs=37.3

Q ss_pred             CCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC
Q 048063          129 YPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN  170 (484)
Q Consensus       129 ~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~  170 (484)
                      .....+.|.|.+.|+||+|++|+.+|+++|+||.+....+..
T Consensus        52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~   93 (136)
T PRK08577         52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK   93 (136)
T ss_pred             CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence            444589999999999999999999999999999999887743

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.05  E-value=0.042  Score=44.21  Aligned_cols=36  Identities=25%  Similarity=0.391  Sum_probs=33.5

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeec
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATK  406 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~  406 (484)
                      +.+++...++||.|+.|+..|+..|+||.+..+.-.
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t   39 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQN   39 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeec
Confidence            679999999999999999999999999999998753

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.05  E-value=0.033  Score=42.26  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=31.4

Q ss_pred             EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC
Q 048063          135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN  170 (484)
Q Consensus       135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~  170 (484)
                      ++.|..+|+||-|++++.+|+++|+||.+...+...
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            367888999999999999999999999988876543

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.04  E-value=0.057  Score=42.47  Aligned_cols=62  Identities=6%  Similarity=0.075  Sum_probs=46.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEeeCCCCCCCcHH-HHHHHHHHHcc
Q 048063           39 VVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS-DAGWFMDVFHVKDEHGNKLTDQK-VINYIQQAIGT  106 (484)
Q Consensus        39 ~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g~~~d~F~V~d~~g~~~~~~~-~~~~L~~~L~~  106 (484)
                      .+.|.++|+||++++++++|+++|.||......+ .+|.+--.|.+...      +.+ .++.|.+.|..
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~------~~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS------TMNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC------chHHHHHHHHHHHhc
Confidence            5789999999999999999999999999877644 35665555666421      122 56777777654

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.01  E-value=0.045  Score=50.47  Aligned_cols=70  Identities=19%  Similarity=0.320  Sum_probs=48.0

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeee-EEEEEcCCCCCCChHHHHHHHHHhCCC--ceEEeec
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVN-AFYLRDISGNEVDMDFVESMKKEILGP--IDLAVKN  446 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d-~F~v~~~~g~~l~~~~~~~l~~~L~~~--~~~~~~~  446 (484)
                      +.++|...|+||.|++|+..|+++|+||.+..+....+...- +....+  |   ++...+++..+| -.  .++.+..
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~--~---~~~~i~qi~kQl-~KLidV~~V~~   75 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS--G---DEQVIEQITKQL-NKLIDVLKVVD   75 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE--C---CHHHHHHHHHHH-hccccEEEEEe
Confidence            568999999999999999999999999999987655433222 222223  2   244556666666 22  4556654

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=95.88  E-value=0.054  Score=43.59  Aligned_cols=62  Identities=5%  Similarity=0.100  Sum_probs=45.8

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeE-EEEEEEeCCCCCCCCChhHHHHHHHHHHHH
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLA-CVAYVSDQSTDTPIDDPGRLATIEEYITTV  204 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~-dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~  204 (484)
                      ..|.+...|+||.|++++++|+..|.||.+..+.. .+.... -++.+. .        +..++.|.+.|.+.
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-~--------~~~i~ql~kQL~KL   67 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-S--------ERPIDLLSSQLNKL   67 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-C--------CchHHHHHHHHhcC
Confidence            57899999999999999999999999999999875 343333 334332 1        23456777776653

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.86  E-value=0.077  Score=39.38  Aligned_cols=45  Identities=24%  Similarity=0.468  Sum_probs=35.4

Q ss_pred             EEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCe-eEEEEEEE
Q 048063          136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDR-LACVAYVS  180 (484)
Q Consensus       136 i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~-~~dvF~V~  180 (484)
                      |.|.+.|+||.+.+++..|.+++++|.+..+...++. ..-.|.+.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~   46 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE   46 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence            4678999999999999999999999999998776533 33334443

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK04435 hypothetical protein; Provisional

Probab=95.82  E-value=0.085  Score=47.91  Aligned_cols=73  Identities=15%  Similarity=0.222  Sum_probs=51.6

Q ss_pred             ecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063          125 FGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN-DRLACVAYVSDQSTDTPIDDPGRLATIEEYITT  203 (484)
Q Consensus       125 ~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~-~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~  203 (484)
                      |..........|.+...|+||+|++|..+|+++|+||......+.. +.+.-.|.+...  +  .  ...++.|.+.|+.
T Consensus        61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs--~--~--~~~L~~Li~~L~~  134 (147)
T PRK04435         61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS--S--M--EGDIDELLEKLRN  134 (147)
T ss_pred             ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC--C--h--HHHHHHHHHHHHc
Confidence            3444566789999999999999999999999999999998866543 444555655543  1  1  1255555555443

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=95.81  E-value=0.032  Score=42.35  Aligned_cols=44  Identities=16%  Similarity=0.264  Sum_probs=33.8

Q ss_pred             EEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEE
Q 048063          373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYL  416 (484)
Q Consensus       373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v  416 (484)
                      +.|...|+||-|++++.+|.++|+||.+.............+++
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~   45 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIF   45 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEE
Confidence            67888999999999999999999999988764443223333444

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=95.75  E-value=0.062  Score=41.21  Aligned_cols=35  Identities=26%  Similarity=0.422  Sum_probs=31.9

Q ss_pred             EEEEEecCCcchHHHHHHHHHhCCceEEEEEeeec
Q 048063          372 RLELCAANRVGLLSDITRVLRENGLAVVRAHVATK  406 (484)
Q Consensus       372 ~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~  406 (484)
                      .+.+.+.|+||.|++|+..|.+++++|.+....+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~   36 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE   36 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence            47889999999999999999999999998887665

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.66  E-value=0.075  Score=41.69  Aligned_cols=34  Identities=15%  Similarity=0.299  Sum_probs=30.2

Q ss_pred             EEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec
Q 048063          136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH  169 (484)
Q Consensus       136 i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~  169 (484)
                      +.|..+|+||-|++++..|+++|+||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            5778899999999999999999999998876543

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.66  E-value=0.015  Score=44.85  Aligned_cols=58  Identities=19%  Similarity=0.349  Sum_probs=41.4

Q ss_pred             EEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHH
Q 048063          373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKK  434 (484)
Q Consensus       373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~  434 (484)
                      +-+.+.|+||+|++|+.+|.++|+||.+....+.++.+.-.|.+.   .. ..++..++|++
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~---~~-~l~~li~~l~~   59 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDID---SE-VSEELLEALRA   59 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC---CC-CCHHHHHHHHc
Confidence            456899999999999999999999998887665554454455442   22 22445566664

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=95.63  E-value=0.058  Score=41.93  Aligned_cols=59  Identities=17%  Similarity=0.373  Sum_probs=41.6

Q ss_pred             EEEEecCCcchHHHHHHHHHhCCceEEEEEeeec--CCeeeeEEEEEcCCCCCCChHHHHHHHHH
Q 048063          373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATK--GEKSVNAFYLRDISGNEVDMDFVESMKKE  435 (484)
Q Consensus       373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~--g~~a~d~F~v~~~~g~~l~~~~~~~l~~~  435 (484)
                      +-+...|+||.+++|+..|+++|++|.+......  ++.+.-+|.+   ++ +.+.+..+.|++.
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v---~~-~~~~~~~~~l~~~   62 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV---DE-PVPDEVLEELRAL   62 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe---CC-CCCHHHHHHHHcC
Confidence            3468899999999999999999999998876543  3445444444   33 3344555666553

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=95.49  E-value=0.055  Score=41.31  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=30.5

Q ss_pred             EEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063          136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWS  168 (484)
Q Consensus       136 i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T  168 (484)
                      +.+.+.|+||.|++|+..|+++|+||.+.....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~   34 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR   34 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence            578899999999999999999999999998776

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.44  E-value=0.14  Score=35.86  Aligned_cols=35  Identities=29%  Similarity=0.567  Sum_probs=31.5

Q ss_pred             EEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC
Q 048063          136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN  170 (484)
Q Consensus       136 i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~  170 (484)
                      |.+.++|+||++++++.+|..+|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46789999999999999999999999999987643

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.33  E-value=0.12  Score=40.10  Aligned_cols=35  Identities=34%  Similarity=0.558  Sum_probs=31.3

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS  168 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T  168 (484)
                      +.+.+..+|+||.|.+++.+|+++|+||.+....-
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~   36 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYP   36 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEec
Confidence            56888999999999999999999999999887543

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.22  E-value=0.025  Score=43.65  Aligned_cols=45  Identities=16%  Similarity=0.249  Sum_probs=36.2

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEe
Q 048063           40 VKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVK   84 (484)
Q Consensus        40 I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~   84 (484)
                      +++.+.|+||++++++.+|++.|+||......+.+|.+.-.|.+.
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~   46 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDID   46 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC
Confidence            678999999999999999999999998766554457666555543

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.16  E-value=0.17  Score=37.51  Aligned_cols=59  Identities=22%  Similarity=0.416  Sum_probs=42.5

Q ss_pred             EEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063          373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDISGNEVDMDFVESMKKEI  436 (484)
Q Consensus       373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~g~~l~~~~~~~l~~~L  436 (484)
                      |.|.+.|+||++.+|+.+|.+++++|.+..+...++. +.-.|.+...     +....+.+.++|
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l   60 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-----DLEHLARIMRKL   60 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-----CHHHHHHHHHHH
Confidence            4678999999999999999999999999998776532 3333434322     233456666666

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=95.16  E-value=0.056  Score=42.02  Aligned_cols=45  Identities=22%  Similarity=0.340  Sum_probs=35.7

Q ss_pred             EEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec--CCeeEEEEEEE
Q 048063          136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH--NDRLACVAYVS  180 (484)
Q Consensus       136 i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~--~~~~~dvF~V~  180 (484)
                      +.+...|+||.+++++.+|+++|+||.+......  ++...-+|.+.
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~   48 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD   48 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence            4568999999999999999999999999887653  44555555543

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK08577 hypothetical protein; Provisional

Probab=95.13  E-value=0.3  Score=43.62  Aligned_cols=58  Identities=14%  Similarity=0.167  Sum_probs=43.4

Q ss_pred             EEEEeccC--CCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEec--CCeEEEEEEE
Q 048063          281 AVYIESCE--EKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCH--GDYAFQEYFI  338 (484)
Q Consensus       281 ~V~v~n~~--~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~--~g~a~d~f~V  338 (484)
                      .|.+.+-.  .+....+.|.+.|+||+++++++.|++.++||.+....+.  ++.+.-.|.+
T Consensus        43 ~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~v  104 (136)
T PRK08577         43 EIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIV  104 (136)
T ss_pred             EEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEE
Confidence            55555443  3447889999999999999999999999999999888443  3444333433

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.05  E-value=0.14  Score=35.95  Aligned_cols=35  Identities=31%  Similarity=0.556  Sum_probs=31.5

Q ss_pred             EEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC
Q 048063          373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKG  407 (484)
Q Consensus       373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g  407 (484)
                      |.+.+.|+||++++|+.+|.++|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46889999999999999999999999999987654

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.02  E-value=0.15  Score=39.98  Aligned_cols=61  Identities=16%  Similarity=0.114  Sum_probs=41.9

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe---cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063           40 VKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS---DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT  106 (484)
Q Consensus        40 I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt---~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~  106 (484)
                      +.+..+|+||-+++++.+|+++|.||.+.....   ..+.-.-.+.|.. +.     ++.++.|.++|.+
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~-e~-----~~~~~~i~~~L~~   65 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTP-MD-----RSKENELIEELKA   65 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEE-ec-----chHHHHHHHHHhC
Confidence            678899999999999999999999999876533   2344333444432 11     1235677777643

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=95.01  E-value=0.35  Score=40.21  Aligned_cols=74  Identities=5%  Similarity=0.074  Sum_probs=52.0

Q ss_pred             CCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhc
Q 048063          128 EYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH-NDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLR  206 (484)
Q Consensus       128 ~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~-~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~  206 (484)
                      ......+.|.+..+|+||-|+++-..|+.+|+|+........ +....=.|||.-.  |. . + ..+..+-+.|.+.+.
T Consensus         9 ~~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDie--g~-~-~-~~~~~~l~~L~~~~~   83 (90)
T cd04931           9 SNKNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLD--KK-S-A-PALDPIIKSLRNDIG   83 (90)
T ss_pred             cCCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE--cC-C-C-HHHHHHHHHHHHHhC
Confidence            334455778888899999999999999999999998887653 3445567888765  43 2 2 344445455555443

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=94.96  E-value=0.16  Score=42.24  Aligned_cols=64  Identities=14%  Similarity=0.363  Sum_probs=47.0

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCCCCCCChH---HHHHHHHHh
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDISGNEVDMD---FVESMKKEI  436 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~g~~l~~~---~~~~l~~~L  436 (484)
                      +.|-+...|+||-|+++-..|+++|||+.+..-+-...+ -+=.||| |.+|. .++.   ..+.|++.|
T Consensus        15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV-Dieg~-~~~~~~~~l~~L~~~~   82 (90)
T cd04931          15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI-NLDKK-SAPALDPIIKSLRNDI   82 (90)
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcC-CCHHHHHHHHHHHHHh
Confidence            556677799999999999999999999999998866544 4457777 55675 2332   345555555

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07334 threonine dehydratase; Provisional

Probab=94.94  E-value=0.15  Score=53.84  Aligned_cols=65  Identities=15%  Similarity=0.262  Sum_probs=49.0

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec----C-CeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063          132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH----N-DRLACVAYVSDQSTDTPIDDPGRLATIEEYITT  203 (484)
Q Consensus       132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~----~-~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~  203 (484)
                      -.+.|.|.+.||||+|++|+.+|++.++||.+....+.    . +.+.-.|.|.-.       +.+++++|.+.|++
T Consensus       325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-------d~~~L~~vi~~Lr~  394 (403)
T PRK07334        325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-------DAAHLQEVIAALRA  394 (403)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            34899999999999999999999999999999998764    3 333333444322       35677777777665

>PRK07431 aspartate kinase; Provisional

Probab=94.90  E-value=2.6  Score=46.88  Aligned_cols=100  Identities=17%  Similarity=0.211  Sum_probs=64.5

Q ss_pred             eeEEEEEeC---CCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHh----
Q 048063          292 YSIVSVDCK---DRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIE----  364 (484)
Q Consensus       292 ~t~V~V~~~---DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~----  364 (484)
                      ...|.|.|.   +.+|+.+++..+|.+.+++|....  + .+.. -+|+|..         ...++..+.|.+.+.    
T Consensus       348 ~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s-Se~~-Is~vv~~---------~d~~~av~~Lh~~f~~~~~  414 (587)
T PRK07431        348 VAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T-SEVK-VSCVIDA---------EDGDKALRAVCEAFELEDS  414 (587)
T ss_pred             eEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c-CCCE-EEEEEcH---------HHHHHHHHHHHHHhccCCc
Confidence            356667664   799999999999999999996433  2 2211 1234422         234455555555551    


Q ss_pred             hc--------cCC-----------ceEEEEE-ecCCcchHHHHHHHHHhCCceEEEEEee
Q 048063          365 RR--------VCE-----------GVRLELC-AANRVGLLSDITRVLRENGLAVVRAHVA  404 (484)
Q Consensus       365 rr--------~~~-----------~t~leV~-a~DRpGLL~~It~~f~~~gi~I~~A~i~  404 (484)
                      +.        .+.           -..|+|. ..+.||+++.|...|.++|++|.....+
T Consensus       415 ~~~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~  474 (587)
T PRK07431        415 QIEINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQS  474 (587)
T ss_pred             ccccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEec
Confidence            10        010           1334443 3578999999999999999999998653

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=94.85  E-value=0.11  Score=40.22  Aligned_cols=57  Identities=11%  Similarity=0.258  Sum_probs=38.3

Q ss_pred             CCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          142 DRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       142 DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      |+||.|.+|+++|...|+||.+..+.. ..+....+-.+... +      +...+.|...|.+..
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~-~------~~~i~~l~~Ql~Kli   58 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG-D------DREIEQLVKQLEKLI   58 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES--------CCHHHHHHHHHHCST
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee-C------chhHHHHHHHHhccC
Confidence            789999999999999999999999987 33333333222222 1      234567777776543

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=94.79  E-value=0.13  Score=39.93  Aligned_cols=34  Identities=26%  Similarity=0.544  Sum_probs=30.9

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEee
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVA  404 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~  404 (484)
                      +.+.+...|+||.|..++++|.++|++|.+....
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~   35 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVY   35 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEe
Confidence            5688999999999999999999999999988654

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04435 hypothetical protein; Provisional

Probab=94.68  E-value=0.38  Score=43.69  Aligned_cols=74  Identities=11%  Similarity=0.055  Sum_probs=52.8

Q ss_pred             EEecCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063           28 CIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS-DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT  106 (484)
Q Consensus        28 ~i~~~~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~  106 (484)
                      -++.......+.+.+...|+||++++|..+|+.+|+||.....+. .+|.+--.|.|...+.     ...++.|.+.|..
T Consensus        60 ~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~~  134 (147)
T PRK04435         60 PFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKLRN  134 (147)
T ss_pred             CccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHHHc
Confidence            344444556789999999999999999999999999999877654 4676665666653211     2255666666654

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=94.56  E-value=0.026  Score=46.26  Aligned_cols=62  Identities=16%  Similarity=0.228  Sum_probs=44.6

Q ss_pred             EEEEEecC-CCchHHHHHHHHHhCCCeEEEEEEEec-----C----CeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHH
Q 048063          135 AIEMTGTD-RPGLFSEISAALADLHCNIVEAHAWSH-----N----DRLACVAYVSDQSTDTPIDDPGRLATIEEYITTV  204 (484)
Q Consensus       135 ~i~V~~~D-rpGLL~~Ia~vL~~~glnI~~A~i~T~-----~----~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~  204 (484)
                      +|+|.++| +.|++++++++|+++|+||.+.+-.+.     +    ..+.-.|.|..+    +    ...+.++++|.+.
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~----~----~~~~~lr~~L~~l   72 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ----P----ADLEALRAALLEL   72 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC----C----CCHHHHHHHHHHH
Confidence            47899999 999999999999999999976654321     1    244567777643    1    1346778877753

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.45  E-value=0.22  Score=39.62  Aligned_cols=48  Identities=19%  Similarity=0.308  Sum_probs=38.6

Q ss_pred             EEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCCC
Q 048063          373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDISG  421 (484)
Q Consensus       373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~g  421 (484)
                      |-+...|+||-|+++-..|+.+|||+.+.+-+....+ .+=.||| |-+|
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~~   51 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCEV   51 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEEc
Confidence            4556689999999999999999999999998866544 5557777 5556

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.43  E-value=0.25  Score=56.02  Aligned_cols=72  Identities=17%  Similarity=0.241  Sum_probs=52.3

Q ss_pred             ecCC-CCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC--CeeEEEEEEEeCCCCCCCCChhHHHHHHHHH
Q 048063          125 FGSE-YPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN--DRLACVAYVSDQSTDTPIDDPGRLATIEEYI  201 (484)
Q Consensus       125 ~~~~-~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~--~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L  201 (484)
                      |+.. ...-.+.|.|.+.||+|||++|+.+++..++||.+..+.+..  +.+.-.|.|.-.       +..++.+|-..|
T Consensus       657 W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-------~~~~L~~l~~~L  729 (743)
T PRK10872        657 WGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-------NLQVLGRVLGKL  729 (743)
T ss_pred             ecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-------CHHHHHHHHHHH
Confidence            7643 223456899999999999999999999999999999987753  444455555433       345667766665


Q ss_pred             HH
Q 048063          202 TT  203 (484)
Q Consensus       202 ~~  203 (484)
                      ..
T Consensus       730 ~~  731 (743)
T PRK10872        730 NQ  731 (743)
T ss_pred             hc
Confidence            43

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.40  E-value=0.46  Score=37.46  Aligned_cols=64  Identities=13%  Similarity=0.184  Sum_probs=44.2

Q ss_pred             EEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063          136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH-NDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT  203 (484)
Q Consensus       136 i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~-~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~  203 (484)
                      +.+...|+||-|+++..+|+.+|+||.+...... +....-.|||.-.  |. . +....+.+.+.|.+
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~--~~-~-~~~~~~~~l~~l~~   66 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE--GH-I-DDPDVKEALEELKR   66 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE--CC-C-CCHHHHHHHHHHHH
Confidence            3455689999999999999999999999976653 3355567777764  42 1 12344555555544

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.08  E-value=0.37  Score=38.04  Aligned_cols=49  Identities=18%  Similarity=0.352  Sum_probs=38.1

Q ss_pred             EEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC-CeeeeEEEEEcCCCC
Q 048063          373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKG-EKSVNAFYLRDISGN  422 (484)
Q Consensus       373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g-~~a~d~F~v~~~~g~  422 (484)
                      +-+...|+||-|++|-.+|+++|+||.+....-.. ....-.||+. -+|.
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id-~~~~   51 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVD-FEGH   51 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEE-EECC
Confidence            34556799999999999999999999999766443 4567788884 4453

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=93.78  E-value=2.7  Score=44.26  Aligned_cols=106  Identities=19%  Similarity=0.310  Sum_probs=66.9

Q ss_pred             CeEEEEEE---ecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCC
Q 048063           36 DCTVVKVD---SVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPS  112 (484)
Q Consensus        36 ~~t~I~V~---~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~  112 (484)
                      +...|+|.   ..+++|+++++..+|.++|+||..-.....+.  --.|.|...+.     ++..+.|++.+...    .
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~--~Is~~V~~~d~-----~~a~~~L~~~~~~~----~  327 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSET--SISLTVDETDA-----DEAVRALKDQSGAA----G  327 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCc--eEEEEEeHHHH-----HHHHHHHHHHHHhc----C
Confidence            45677777   67889999999999999999997433211111  12355532100     12233333332111    0


Q ss_pred             ccccccccceeeecCCCCCCeEEEEEEec---CCCchHHHHHHHHHhCCCeEEE
Q 048063          113 SAVAKTYTNKAVFGSEYPSEHTAIEMTGT---DRPGLFSEISAALADLHCNIVE  163 (484)
Q Consensus       113 ~~~~~~~~~v~v~~~~~~~~~t~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~  163 (484)
                      +      ..+.     ...+...|.|.+.   ++||+++++..+|++.|+||..
T Consensus       328 ~------~~i~-----~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       328 L------DRVE-----VEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             C------ceEE-----EeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence            1      1122     2235778888874   7999999999999999999984

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=93.45  E-value=0.48  Score=53.63  Aligned_cols=71  Identities=18%  Similarity=0.229  Sum_probs=51.3

Q ss_pred             ecCCC-CCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCe-eEEEEEEEeCCCCCCCCChhHHHHHHHHHH
Q 048063          125 FGSEY-PSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDR-LACVAYVSDQSTDTPIDDPGRLATIEEYIT  202 (484)
Q Consensus       125 ~~~~~-~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~-~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~  202 (484)
                      |+... ..-.+.|.|.+.||+|+|++|+.+++..++||.++.+.+..+. +.-.|.+.-.       +..++.+|-..|.
T Consensus       617 W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~-------~~~~L~~i~~~Lr  689 (702)
T PRK11092        617 WDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR-------DRVHLANIMRKIR  689 (702)
T ss_pred             ECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence            76432 2345689999999999999999999999999999998776543 3344544432       3456666666554

>PRK07334 threonine dehydratase; Provisional

Probab=93.32  E-value=0.44  Score=50.38  Aligned_cols=63  Identities=13%  Similarity=0.100  Sum_probs=47.9

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-----CCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063           38 TVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSD-----AGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT  106 (484)
Q Consensus        38 t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~-----~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~  106 (484)
                      +.|.|.+.||+|+|++|+.+|++.+.||.+....+.     ++.+.-.|.|.      +.+.+.++.+.+.|..
T Consensus       327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~------V~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE------TRDAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence            689999999999999999999999999999887653     56655555553      2234456666666654

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=93.22  E-value=0.34  Score=37.38  Aligned_cols=31  Identities=29%  Similarity=0.497  Sum_probs=26.0

Q ss_pred             CCcchHHHHHHHHHhCCceEEEEEeeecCCe
Q 048063          379 NRVGLLSDITRVLRENGLAVVRAHVATKGEK  409 (484)
Q Consensus       379 DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~  409 (484)
                      |+||+|..|+.+|...|+||.+..+......
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~   31 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDP   31 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SST
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCC
Confidence            6899999999999999999999999874333

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=93.14  E-value=2.2  Score=44.97  Aligned_cols=102  Identities=14%  Similarity=0.144  Sum_probs=67.6

Q ss_pred             CceeEEEEE---eCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh-
Q 048063          290 KGYSIVSVD---CKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER-  365 (484)
Q Consensus       290 ~~~t~V~V~---~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r-  365 (484)
                      ++...|.|.   ..+++|+++++..+|.+.+++|..-........  -+|+|..         ...++..+.|.+.+.. 
T Consensus       258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~--Is~~V~~---------~d~~~a~~~L~~~~~~~  326 (401)
T TIGR00656       258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETS--ISLTVDE---------TDADEAVRALKDQSGAA  326 (401)
T ss_pred             CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCce--EEEEEeH---------HHHHHHHHHHHHHHHhc
Confidence            345677777   578899999999999999999974332111111  2344422         1234444444444311 


Q ss_pred             -----cc-CCceEEEEEec---CCcchHHHHHHHHHhCCceEEEEE
Q 048063          366 -----RV-CEGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAH  402 (484)
Q Consensus       366 -----r~-~~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~  402 (484)
                           .. .....|.|.+.   ++||+++++.++|.+.||||....
T Consensus       327 ~~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~  372 (401)
T TIGR00656       327 GLDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIG  372 (401)
T ss_pred             CCceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE
Confidence                 11 22467778885   799999999999999999998543

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK11899 prephenate dehydratase; Provisional

Probab=93.10  E-value=0.39  Score=48.35  Aligned_cols=56  Identities=20%  Similarity=0.278  Sum_probs=44.2

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCCCCCCChH
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDISGNEVDMD  427 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~g~~l~~~  427 (484)
                      |.|-+...|+||.|+++-.+|+++|||+.+..-+-.+.+ .+=.||| |.+|..-++.
T Consensus       195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~~d~~  251 (279)
T PRK11899        195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHPEDRN  251 (279)
T ss_pred             EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCCCCHH
Confidence            556666689999999999999999999999998866544 5557888 6678654443

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.97  E-value=0.53  Score=36.56  Aligned_cols=60  Identities=12%  Similarity=0.124  Sum_probs=39.8

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063           40 VKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSD-AGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT  106 (484)
Q Consensus        40 I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~-~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~  106 (484)
                      +.|.-|||||-|.+++.+++. |.||.+-.-... .+.+ .++....-     .+++..+.|.+.|..
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~-~v~v~ie~-----~~~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEA-RVLVGIQV-----PDREDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCce-EEEEEEEe-----CCHHHHHHHHHHHHH
Confidence            357889999999999999999 999998776332 2222 22332221     123466777777765

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06635 aspartate kinase; Reviewed

Probab=92.91  E-value=1.3  Score=46.69  Aligned_cols=103  Identities=14%  Similarity=0.182  Sum_probs=67.6

Q ss_pred             ceeEEEEE-eCCCCchHHHHHHHHhhCCceEEEEEEEe-cCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHH---Hh-
Q 048063          291 GYSIVSVD-CKDRPRLMFDTVCTLTDMQYVVFHASIGC-HGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAA---IE-  364 (484)
Q Consensus       291 ~~t~V~V~-~~DrpgLl~~i~~~L~~~~l~I~~A~i~t-~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~---l~-  364 (484)
                      +...|.|. ..++||+++++..+|.+.|++|.....+. .+|+.--.|.+..         ...+...+.|.+.   +. 
T Consensus       261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~---------~~~~~a~~~L~~~~~~~~~  331 (404)
T PRK06635        261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR---------DDLEKALELLEEVKDEIGA  331 (404)
T ss_pred             CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH---------HHHHHHHHHHHHHHHHcCc
Confidence            33444444 47889999999999999999999654422 2234444555532         1233333334331   11 


Q ss_pred             hc---cCCceEEEEEe---cCCcchHHHHHHHHHhCCceEEEEE
Q 048063          365 RR---VCEGVRLELCA---ANRVGLLSDITRVLRENGLAVVRAH  402 (484)
Q Consensus       365 rr---~~~~t~leV~a---~DRpGLL~~It~~f~~~gi~I~~A~  402 (484)
                      +.   ......++|.+   .++||++++|.++|.++||+|....
T Consensus       332 ~~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        332 ESVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS  375 (404)
T ss_pred             ceEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence            00   11246688876   5899999999999999999998864

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=92.89  E-value=0.65  Score=52.54  Aligned_cols=71  Identities=18%  Similarity=0.194  Sum_probs=50.9

Q ss_pred             ecCC-CCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeeEEEEEEEeCCCCCCCCChhHHHHHHHHHH
Q 048063          125 FGSE-YPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN-DRLACVAYVSDQSTDTPIDDPGRLATIEEYIT  202 (484)
Q Consensus       125 ~~~~-~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~-~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~  202 (484)
                      |+.. ...-.+.|.|.+.||+|+|++|+.+++..++||.+..+.+.. +.+.-.|.|.-.       +..++.+|-..|.
T Consensus       601 W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~-------~~~~L~~ii~~L~  673 (683)
T TIGR00691       601 WNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK-------NYKHLLKIMLKIK  673 (683)
T ss_pred             ecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence            7543 223466899999999999999999999999999999988764 333334444332       3456666666554

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=92.86  E-value=0.46  Score=37.93  Aligned_cols=50  Identities=20%  Similarity=0.328  Sum_probs=39.6

Q ss_pred             EEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCCCCC
Q 048063          373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDISGNE  423 (484)
Q Consensus       373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~g~~  423 (484)
                      +-+...|+||-|+++-..|+.+|||+.+.+.+..... .+=.||| |-+|..
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i-d~e~~~   53 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV-DCECDQ   53 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcCH
Confidence            4455689999999999999999999999998866444 5567887 445654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.74  E-value=0.72  Score=35.80  Aligned_cols=60  Identities=25%  Similarity=0.250  Sum_probs=40.0

Q ss_pred             EEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063          137 EMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT  203 (484)
Q Consensus       137 ~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~  203 (484)
                      .|.-+||||-|.+++.+++. |.||...+=.-.+.....++..-..      .+++..+.+.++|.+
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV------PDREDLAELKERLEA   61 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe------CCHHHHHHHHHHHHH
Confidence            56789999999999999999 9999887644333223333333222      124566777776654

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06635 aspartate kinase; Reviewed

Probab=92.64  E-value=3.6  Score=43.42  Aligned_cols=108  Identities=17%  Similarity=0.266  Sum_probs=66.9

Q ss_pred             EEEEEE-ecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCccc
Q 048063           38 TVVKVD-SVSKQGLLLEMVQVLTDMNLTISKSYISS-DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAV  115 (484)
Q Consensus        38 t~I~V~-~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~  115 (484)
                      ..|++. ..++||.++++..+|++.|+||.-...+. .+|..--.|.|...+.     +...+.|++ +...     +. 
T Consensus       263 ~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~-----~~a~~~L~~-~~~~-----~~-  330 (404)
T PRK06635        263 AKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDL-----EKALELLEE-VKDE-----IG-  330 (404)
T ss_pred             EEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHH-----HHHHHHHHH-HHHH-----cC-
Confidence            344443 57889999999999999999999543322 3334444466542111     112222332 1111     10 


Q ss_pred             cccccceeeecCCCCCCeEEEEEEe---cCCCchHHHHHHHHHhCCCeEEEEE
Q 048063          116 AKTYTNKAVFGSEYPSEHTAIEMTG---TDRPGLFSEISAALADLHCNIVEAH  165 (484)
Q Consensus       116 ~~~~~~v~v~~~~~~~~~t~i~V~~---~DrpGLL~~Ia~vL~~~glnI~~A~  165 (484)
                         ...+. +    ..+...+.|.+   +|+||.++++..+|+++|+||....
T Consensus       331 ---~~~i~-~----~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        331 ---AESVT-Y----DDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS  375 (404)
T ss_pred             ---cceEE-E----cCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence               11232 2    23567788876   6999999999999999999998753

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=92.50  E-value=1  Score=35.70  Aligned_cols=48  Identities=6%  Similarity=0.138  Sum_probs=38.0

Q ss_pred             EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeeEEEEEEEeC
Q 048063          135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH-NDRLACVAYVSDQ  182 (484)
Q Consensus       135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~-~~~~~dvF~V~~~  182 (484)
                      .|.+..+|+||-|+++-..|+.+|+|+..-..... +....=.|||.-.
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~   50 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCE   50 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEE
Confidence            45566689999999999999999999998887653 3445567888765

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=92.46  E-value=0.84  Score=51.87  Aligned_cols=74  Identities=15%  Similarity=0.210  Sum_probs=53.1

Q ss_pred             EEEecC-CCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEeeCCCCCCCcHHHHHHHHHH
Q 048063           27 VCIDNE-SMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSD--AGWFMDVFHVKDEHGNKLTDQKVINYIQQA  103 (484)
Q Consensus        27 V~i~~~-~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~--~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~  103 (484)
                      |.|+.. ...-...|.|.+.||+|||++|+.+++..++||.+..+.+.  ++.+.-.|.|.      +.+-+.+..+...
T Consensus       655 V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie------V~~~~~L~~l~~~  728 (743)
T PRK10872        655 AVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE------IYNLQVLGRVLGK  728 (743)
T ss_pred             eEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE------ECCHHHHHHHHHH
Confidence            456432 11223588899999999999999999999999999998664  57766666654      2234466777666


Q ss_pred             Hcc
Q 048063          104 IGT  106 (484)
Q Consensus       104 L~~  106 (484)
                      |..
T Consensus       729 L~~  731 (743)
T PRK10872        729 LNQ  731 (743)
T ss_pred             Hhc
Confidence            654

>PRK06291 aspartate kinase; Provisional

Probab=92.30  E-value=6.2  Score=42.61  Aligned_cols=111  Identities=15%  Similarity=0.249  Sum_probs=70.6

Q ss_pred             CeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCC
Q 048063           36 DCTVVKVDSV---SKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPS  112 (484)
Q Consensus        36 ~~t~I~V~~~---DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~  112 (484)
                      +...|+|.+.   +.+|+++++.++|+++|+||.-....+..-  --.|.|...+   .  +...+.|.+.+....    
T Consensus       320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~--sIsf~V~~~d---~--~~av~~L~~~~~~~~----  388 (465)
T PRK06291        320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSES--NISLVVDEAD---L--EKALKALRREFGEGL----  388 (465)
T ss_pred             CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCc--eEEEEEeHHH---H--HHHHHHHHHHHHHhc----
Confidence            4567777754   689999999999999999998644333221  1135554211   0  123344444443210    


Q ss_pred             ccccccccceeeecCCCCCCeEEEEEEec---CCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063          113 SAVAKTYTNKAVFGSEYPSEHTAIEMTGT---DRPGLFSEISAALADLHCNIVEAHAWS  168 (484)
Q Consensus       113 ~~~~~~~~~v~v~~~~~~~~~t~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~A~i~T  168 (484)
                            ...++ +    ..+...|.|.+.   +++|+++++..+|...|+||......+
T Consensus       389 ------~~~i~-~----~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgs  436 (465)
T PRK06291        389 ------VRDVT-F----DKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGS  436 (465)
T ss_pred             ------CcceE-E----eCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEecc
Confidence                  11233 2    235677888875   799999999999999999998554333

>PRK08210 aspartate kinase I; Reviewed

Probab=92.09  E-value=5.5  Score=42.03  Aligned_cols=99  Identities=19%  Similarity=0.321  Sum_probs=65.4

Q ss_pred             CeEEEEEEecCC-CcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCcc
Q 048063           36 DCTVVKVDSVSK-QGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSA  114 (484)
Q Consensus        36 ~~t~I~V~~~Dr-pGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~  114 (484)
                      +...|+|...+. +|.++++...|+++|+||.-...+ ...   -.|.+..         +..+.+.+.|....    + 
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~-~~~---is~~v~~---------~~~~~a~~~l~~~~----~-  331 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF-PTE---VVFTVSD---------EDSEKAKEILENLG----L-  331 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec-Cce---EEEEEcH---------HHHHHHHHHHHHhC----C-
Confidence            455677766555 999999999999999999865333 221   2355532         12233344443321    1 


Q ss_pred             ccccccceeeecCCCCCCeEEEEEEec---CCCchHHHHHHHHHhCCCeEEE
Q 048063          115 VAKTYTNKAVFGSEYPSEHTAIEMTGT---DRPGLFSEISAALADLHCNIVE  163 (484)
Q Consensus       115 ~~~~~~~v~v~~~~~~~~~t~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~  163 (484)
                            .+. +    ..+...|.|.+.   ++||+++++..+|++.|+||..
T Consensus       332 ------~v~-~----~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        332 ------KPS-V----RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             ------cEE-E----eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence                  122 2    224677777774   8999999999999999999974

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=92.01  E-value=0.68  Score=51.96  Aligned_cols=71  Identities=24%  Similarity=0.411  Sum_probs=51.7

Q ss_pred             ecCCC-CCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEE-EEEEeCCCCCCCCChhHHHHHHHHHH
Q 048063          125 FGSEY-PSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACV-AYVSDQSTDTPIDDPGRLATIEEYIT  202 (484)
Q Consensus       125 ~~~~~-~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dv-F~V~~~~~g~~i~d~~~~~~l~~~L~  202 (484)
                      |+.+. ..-.+.|.|.+.||+|||++|+.+|+..++||.+....+..++...+ |.+.-       .+...+.+|-..|.
T Consensus       618 W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v-------~n~~~L~~i~~~l~  690 (701)
T COG0317         618 WGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV-------KNLNHLGRVLARLK  690 (701)
T ss_pred             ecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE-------CcHHHHHHHHHHHh
Confidence            77663 45678999999999999999999999999999999988764444433 32322       23456666655544

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=91.85  E-value=0.51  Score=43.34  Aligned_cols=47  Identities=17%  Similarity=0.398  Sum_probs=38.0

Q ss_pred             EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEe
Q 048063          135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSD  181 (484)
Q Consensus       135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~  181 (484)
                      -+.+.+.++||.|.++++.++++|.||..|+.+..++.-....|..-
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi   50 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI   50 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence            46788999999999999999999999999999986654343444443

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=91.84  E-value=0.73  Score=44.27  Aligned_cols=59  Identities=12%  Similarity=0.218  Sum_probs=43.7

Q ss_pred             CceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC--CeeeeEEEEEcCCCCCCChHHHHH
Q 048063          369 EGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKG--EKSVNAFYLRDISGNEVDMDFVES  431 (484)
Q Consensus       369 ~~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g--~~a~d~F~v~~~~g~~l~~~~~~~  431 (484)
                      ..+.+-+.-.||||.+..|+.+|.++||||....+....  +.|--+.-+    .++++++.+++
T Consensus       147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v----D~~v~~~vl~~  207 (208)
T TIGR00719       147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI----DKNIDDHIKDA  207 (208)
T ss_pred             CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe----CCCCCHHHHhh
Confidence            356788888999999999999999999999999998654  334333333    34556665543

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=91.74  E-value=0.64  Score=44.66  Aligned_cols=52  Identities=21%  Similarity=0.278  Sum_probs=42.8

Q ss_pred             CCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec--CCeeEEEEEE
Q 048063          128 EYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH--NDRLACVAYV  179 (484)
Q Consensus       128 ~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~--~~~~~dvF~V  179 (484)
                      +-.+....+.+.-.|+||.+..|+.+|.++|+||...++...  ++.+.-+..+
T Consensus       143 d~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v  196 (208)
T TIGR00719       143 EFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI  196 (208)
T ss_pred             EecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence            445567788888999999999999999999999999999873  4556655554

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=91.49  E-value=0.89  Score=35.16  Aligned_cols=46  Identities=28%  Similarity=0.394  Sum_probs=35.8

Q ss_pred             CeEEEEEEec----CCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeC
Q 048063          132 EHTAIEMTGT----DRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQ  182 (484)
Q Consensus       132 ~~t~i~V~~~----DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~  182 (484)
                      +...|.|.+.    |.||+++++...|++.|+||....  |+.   .|.|.|...
T Consensus         5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S~~---~~~ilV~~~   54 (65)
T PF13840_consen    5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--SEI---SISILVKEE   54 (65)
T ss_dssp             EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--ESS---EEEEEEEGG
T ss_pred             CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--Eee---eEEEEEeHH
Confidence            5677888887    899999999999999999998776  444   566666543

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=91.33  E-value=1.5  Score=49.64  Aligned_cols=74  Identities=16%  Similarity=0.204  Sum_probs=52.7

Q ss_pred             EEEecCCCC-CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEeeCCCCCCCcHHHHHHHHHHH
Q 048063           27 VCIDNESME-DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSD-AGWFMDVFHVKDEHGNKLTDQKVINYIQQAI  104 (484)
Q Consensus        27 V~i~~~~~~-~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~-~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L  104 (484)
                      |.|+..... -.+.|.|.+.||+|++++|+.+++..++||.+....+. ++.+.-.|.+.      +.+-+.+..|...|
T Consensus       615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ie------V~~~~~L~~i~~~L  688 (702)
T PRK11092        615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLT------ARDRVHLANIMRKI  688 (702)
T ss_pred             eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEE------ECCHHHHHHHHHHH
Confidence            456543222 23588899999999999999999999999999998664 46655556554      22345667777666


Q ss_pred             cc
Q 048063          105 GT  106 (484)
Q Consensus       105 ~~  106 (484)
                      ..
T Consensus       689 r~  690 (702)
T PRK11092        689 RV  690 (702)
T ss_pred             hC
Confidence            54

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=90.79  E-value=0.51  Score=36.52  Aligned_cols=43  Identities=12%  Similarity=0.312  Sum_probs=33.5

Q ss_pred             eEEEEEec----CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEc
Q 048063          371 VRLELCAA----NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRD  418 (484)
Q Consensus       371 t~leV~a~----DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~  418 (484)
                      ..|.|.+.    |.||+++.++..|++.||+|....  |+   -.+.|+|..
T Consensus         7 ~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S~---~~~~ilV~~   53 (65)
T PF13840_consen    7 AKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--SE---ISISILVKE   53 (65)
T ss_dssp             EEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--ES---SEEEEEEEG
T ss_pred             EEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--Ee---eeEEEEEeH
Confidence            45677766    799999999999999999999887  33   466777754

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=90.46  E-value=1.8  Score=48.98  Aligned_cols=74  Identities=14%  Similarity=0.144  Sum_probs=52.2

Q ss_pred             EEEecC-CCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEeeCCCCCCCcHHHHHHHHHHH
Q 048063           27 VCIDNE-SMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSD-AGWFMDVFHVKDEHGNKLTDQKVINYIQQAI  104 (484)
Q Consensus        27 V~i~~~-~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~-~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L  104 (484)
                      |.|... +..-.+.|.|.+.||+|+|++|+.+++..+.||.+..+.+. ++.+.-.|.|.      +.+-+.+..|...|
T Consensus       599 v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ie------V~~~~~L~~ii~~L  672 (683)
T TIGR00691       599 VEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVE------IKNYKHLLKIMLKI  672 (683)
T ss_pred             EEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEE------ECCHHHHHHHHHHH
Confidence            456533 22224588899999999999999999999999999998664 56655455553      22344666666666


Q ss_pred             cc
Q 048063          105 GT  106 (484)
Q Consensus       105 ~~  106 (484)
                      ..
T Consensus       673 ~~  674 (683)
T TIGR00691       673 KT  674 (683)
T ss_pred             hC
Confidence            54

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=90.39  E-value=0.56  Score=49.81  Aligned_cols=61  Identities=23%  Similarity=0.397  Sum_probs=50.1

Q ss_pred             ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHH
Q 048063          370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKK  434 (484)
Q Consensus       370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~  434 (484)
                      ++.|-+.-.|+||.++.|+.+|.++||||...+..+.|+.|--+|-+   ++ +++++.+++|++
T Consensus       338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~---D~-~~~~~~~~~i~~  398 (409)
T PRK11790        338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV---DA-DYAEEALDALKA  398 (409)
T ss_pred             CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe---CC-CCcHHHHHHHHc
Confidence            58888999999999999999999999999999998888666655555   44 455667777764

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=90.21  E-value=2.9  Score=33.30  Aligned_cols=48  Identities=10%  Similarity=0.144  Sum_probs=38.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeeEEEEEEEeC
Q 048063          135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH-NDRLACVAYVSDQ  182 (484)
Q Consensus       135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~-~~~~~dvF~V~~~  182 (484)
                      .+.+..+|+||-|+++-..|+.+|+|+........ +....-.|||.-.
T Consensus         2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e   50 (74)
T cd04929           2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCE   50 (74)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE
Confidence            34556689999999999999999999998887763 4445667888765

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=90.10  E-value=1.2  Score=38.72  Aligned_cols=52  Identities=10%  Similarity=0.037  Sum_probs=41.6

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeee-eEEEEEcCCCCC
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSV-NAFYLRDISGNE  423 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~-d~F~v~~~~g~~  423 (484)
                      +.|-+...|+||-|++|-..|+.+|||+.+.+.+.....-+ =.||| |.+|..
T Consensus        42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~~   94 (115)
T cd04930          42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVHR   94 (115)
T ss_pred             EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeCH
Confidence            55667779999999999999999999999999887765544 46666 555653

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=90.08  E-value=0.73  Score=45.07  Aligned_cols=66  Identities=18%  Similarity=0.211  Sum_probs=46.9

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEE--EEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLAC--VAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~d--vF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      ...+|.+.-.|.||.+++|+++|+..|.||.+.-+--....+.-  +..++..        ...+++.++.|++..
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gt--------d~VveQa~rQiedlV  143 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGT--------DGVVEQARRQIEDLV  143 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEecc--------HHHHHHHHHHHHHhh
Confidence            46688889999999999999999999999999887643333332  3333332        245566667666654

>PRK11899 prephenate dehydratase; Provisional

Probab=89.80  E-value=2.6  Score=42.47  Aligned_cols=50  Identities=12%  Similarity=0.092  Sum_probs=42.2

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeeEEEEEEEeC
Q 048063          133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH-NDRLACVAYVSDQ  182 (484)
Q Consensus       133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~-~~~~~dvF~V~~~  182 (484)
                      .|.|-+..+|+||.|+++-.+|+.+|+|+.+...... +....=+|||.-.
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~e  244 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIE  244 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEE
Confidence            5777778899999999999999999999999887764 4446678998875

>PRK06545 prephenate dehydrogenase; Validated

Probab=89.43  E-value=1.3  Score=46.02  Aligned_cols=52  Identities=15%  Similarity=0.201  Sum_probs=42.5

Q ss_pred             CCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEe
Q 048063          130 PSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSD  181 (484)
Q Consensus       130 ~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~  181 (484)
                      -+.++.|.|.-+||||-+++|+..|...|+||.+.+|.-..+...-++.+..
T Consensus       287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~  338 (359)
T PRK06545        287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF  338 (359)
T ss_pred             CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence            4578999999999999999999999999999999999765544444444443

>PRK06382 threonine dehydratase; Provisional

Probab=89.35  E-value=2.1  Score=45.32  Aligned_cols=67  Identities=22%  Similarity=0.163  Sum_probs=47.6

Q ss_pred             CCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEE----e-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063          130 PSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAW----S-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT  203 (484)
Q Consensus       130 ~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~----T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~  203 (484)
                      ....+.+.|.-+|+||-|.+++.+|.++|+||.+....    . ..+...-+|.|...       +++..+.|.+.|.+
T Consensus       327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~  398 (406)
T PRK06382        327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE  398 (406)
T ss_pred             cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999887654    1 12334455555443       23444566666554

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=89.25  E-value=1.5  Score=44.04  Aligned_cols=55  Identities=20%  Similarity=0.318  Sum_probs=44.2

Q ss_pred             ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCCCCCCC
Q 048063          370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDISGNEVD  425 (484)
Q Consensus       370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~g~~l~  425 (484)
                      .|.|=+...|+||-|+++-.+|+.+|||+.+..-+-.+.. .+=+||| |-+|..-+
T Consensus       194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~~  249 (279)
T COG0077         194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHIDD  249 (279)
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcCc
Confidence            4667777789999999999999999999999998865555 5557777 66676644

>PRK08210 aspartate kinase I; Reviewed

Probab=88.73  E-value=4.9  Score=42.47  Aligned_cols=125  Identities=14%  Similarity=0.202  Sum_probs=75.7

Q ss_pred             CceeEEEEEeCCC-CchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh--c
Q 048063          290 KGYSIVSVDCKDR-PRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER--R  366 (484)
Q Consensus       290 ~~~t~V~V~~~Dr-pgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r--r  366 (484)
                      ++...|.|.+.+. ||.++++...|.+.|+||.....+. ..   -+|.+..         ...+++.+.|.+. ..  .
T Consensus       269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~-~~---is~~v~~---------~~~~~a~~~l~~~-~~~v~  334 (403)
T PRK08210        269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP-TE---VVFTVSD---------EDSEKAKEILENL-GLKPS  334 (403)
T ss_pred             CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC-ce---EEEEEcH---------HHHHHHHHHHHHh-CCcEE
Confidence            3455677776555 9999999999999999999764331 11   1344422         1233333333331 10  1


Q ss_pred             c-CCceEEEEEec---CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063          367 V-CEGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI  436 (484)
Q Consensus       367 ~-~~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L  436 (484)
                      . .....|.|.+.   ++||+++++..+|.+.||+|..  +.|  ....-.|.+...+.    ...++.|.+++
T Consensus       335 ~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~--~~~--s~~~is~vv~~~~~----~~a~~~Lh~~f  400 (403)
T PRK08210        335 VRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ--SAD--SHTTIWVLVKEEDM----EKAVNALHDAF  400 (403)
T ss_pred             EeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE--Eec--CCCEEEEEEcHHHH----HHHHHHHHHHh
Confidence            1 22567778885   7999999999999999999975  333  12233455543211    22445566555

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=88.68  E-value=1.5  Score=40.47  Aligned_cols=45  Identities=11%  Similarity=0.146  Sum_probs=36.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCC-eEEEEEEE
Q 048063           39 VVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS-DAG-WFMDVFHV   83 (484)
Q Consensus        39 ~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g-~~~d~F~V   83 (484)
                      -+.+.+.|+||.+.+++++++++|.||.-|+... .+| ..+--|.+
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi   50 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI   50 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence            5788999999999999999999999999999754 555 44433333

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=88.24  E-value=0.31  Score=39.87  Aligned_cols=31  Identities=19%  Similarity=0.266  Sum_probs=28.3

Q ss_pred             EEEEEecC-CCcHHHHHHHHHHhCCceEEEEE
Q 048063           39 VVKVDSVS-KQGLLLEMVQVLTDMNLTISKSY   69 (484)
Q Consensus        39 ~I~V~~~D-rpGLfa~ia~vL~~~glnI~~A~   69 (484)
                      .|||.++| ..|++++++++|+++|+||.+-+
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~   32 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIR   32 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence            48999999 99999999999999999998644

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=87.97  E-value=1  Score=47.85  Aligned_cols=48  Identities=19%  Similarity=0.191  Sum_probs=42.4

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEE
Q 048063          132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYV  179 (484)
Q Consensus       132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V  179 (484)
                      ....|.+.-.|+||.++.|+.+|+++|+||...++.+.++.+.-+|-+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~  384 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV  384 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe
Confidence            567788899999999999999999999999999998888777766654

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=87.84  E-value=2.1  Score=45.16  Aligned_cols=55  Identities=22%  Similarity=0.318  Sum_probs=43.6

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC-CeeeeEEEEEcCCCCCCCh
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKG-EKSVNAFYLRDISGNEVDM  426 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g-~~a~d~F~v~~~~g~~l~~  426 (484)
                      |.|-+...|+||.|+++-..|+.+|||+.+..-+-.+ ...+=.||| |.+|..-++
T Consensus       298 tsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi-d~eg~~~d~  353 (386)
T PRK10622        298 TTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL-DVQANLRSA  353 (386)
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE-EEeCCCCCH
Confidence            4566667899999999999999999999999988544 446668888 667865444

>PRK09034 aspartate kinase; Reviewed

Probab=87.68  E-value=19  Score=38.72  Aligned_cols=138  Identities=15%  Similarity=0.122  Sum_probs=80.3

Q ss_pred             CeEEEEEEe---cCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCC
Q 048063           36 DCTVVKVDS---VSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPS  112 (484)
Q Consensus        36 ~~t~I~V~~---~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~  112 (484)
                      +.+.|++..   .+++|+++++..+|+++|+||.--  ++ +. .--.|.|.+.+-.    ...+..+.+.|...     
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~s-s~-~sis~~v~~~~~~----~a~~~~l~~el~~~-----  373 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--PS-GI-DDLSIIIRERQLT----PKKEDEILAEIKQE-----  373 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--cC-CC-cEEEEEEeHHHhh----HHHHHHHHHHHHHh-----
Confidence            345666664   678999999999999999999864  22 11 2224666532110    00112333223221     


Q ss_pred             ccccccccceeeecCCCCCCeEEEEEEe---cCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCC
Q 048063          113 SAVAKTYTNKAVFGSEYPSEHTAIEMTG---TDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPID  189 (484)
Q Consensus       113 ~~~~~~~~~v~v~~~~~~~~~t~i~V~~---~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~  189 (484)
                      +.    ...+. +    ..+...|.+.+   .++||+++++..+|+++|+||......+..  .--.|.|..        
T Consensus       374 ~~----~~~I~-~----~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se--~~Is~vV~~--------  434 (454)
T PRK09034        374 LN----PDELE-I----EHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSE--ISIMFGVKN--------  434 (454)
T ss_pred             hC----CceEE-E----eCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCc--ceEEEEEcH--------
Confidence            10    11232 2    23567788865   489999999999999999999877543322  222344432        


Q ss_pred             ChhHHHHHHHHHHHHhcc
Q 048063          190 DPGRLATIEEYITTVLRA  207 (484)
Q Consensus       190 d~~~~~~l~~~L~~~L~g  207 (484)
                        ....+..+.|++.+-+
T Consensus       435 --~d~~~av~~LH~~f~~  450 (454)
T PRK09034        435 --EDAEKAVKAIYNAFFK  450 (454)
T ss_pred             --HHHHHHHHHHHHHHhc
Confidence              2234555666666643

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=87.61  E-value=4.3  Score=32.99  Aligned_cols=61  Identities=21%  Similarity=0.235  Sum_probs=36.5

Q ss_pred             EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063          135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT  203 (484)
Q Consensus       135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~  203 (484)
                      ++.|.-+|+||=|++++.+|+  +.||....-.- ..+.+.-.+.+... ++     ++..+.+.+.|.+
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~-~~-----~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA-NG-----AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC-Cc-----HHHHHHHHHHHHH
Confidence            577888999999999999999  55665433222 22333333333333 11     3455666666554

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=86.93  E-value=2.3  Score=39.23  Aligned_cols=67  Identities=15%  Similarity=0.247  Sum_probs=48.0

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhc
Q 048063          133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLR  206 (484)
Q Consensus       133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~  206 (484)
                      ..++.+.-.|.||.|+++++.|+..|+||.+..+.- ......-+-.|..   |    |+...+++...|.+...
T Consensus         4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g----~~~~~EQi~kQL~kLid   71 (163)
T COG0440           4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---G----DEQVLEQIIKQLNKLID   71 (163)
T ss_pred             eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---C----CcchHHHHHHHHHhhcc
Confidence            346777889999999999999999999999998874 4444333333333   2    23566778777777553

>PRK06291 aspartate kinase; Provisional

Probab=86.74  E-value=16  Score=39.55  Aligned_cols=129  Identities=16%  Similarity=0.238  Sum_probs=79.6

Q ss_pred             CceeEEEEEeC---CCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh-
Q 048063          290 KGYSIVSVDCK---DRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER-  365 (484)
Q Consensus       290 ~~~t~V~V~~~---DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r-  365 (484)
                      ++...|.|.+.   +.+|+++++..+|.+.|++|......+....  -+|.|..         ...+...+.|.+.+.. 
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~s--Isf~V~~---------~d~~~av~~L~~~~~~~  387 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESN--ISLVVDE---------ADLEKALKALRREFGEG  387 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCce--EEEEEeH---------HHHHHHHHHHHHHHHHh
Confidence            35567788764   7899999999999999999986543322211  1244432         1233333444444321 


Q ss_pred             c------cCCceEEEEEec---CCcchHHHHHHHHHhCCceEEEEEeeecCCeeee-EEEEEcCCCCCCChHHHHHHHHH
Q 048063          366 R------VCEGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVN-AFYLRDISGNEVDMDFVESMKKE  435 (484)
Q Consensus       366 r------~~~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d-~F~v~~~~g~~l~~~~~~~l~~~  435 (484)
                      .      ......|.|.+.   +++|+++++..+|.+.||+|....   +|..... .|.|...+    .+..++.|..+
T Consensus       388 ~~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is---qgsSe~~Is~vV~~~d----~~~av~~Lh~~  460 (465)
T PRK06291        388 LVRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS---QGSSEVNISFVVDEED----GERAVKVLHDE  460 (465)
T ss_pred             cCcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE---eccccCeEEEEEeHHH----HHHHHHHHHHH
Confidence            1      122577888886   799999999999999999998655   3333333 35553221    12344556555


Q ss_pred             h
Q 048063          436 I  436 (484)
Q Consensus       436 L  436 (484)
                      +
T Consensus       461 f  461 (465)
T PRK06291        461 F  461 (465)
T ss_pred             h
Confidence            5

>PRK09034 aspartate kinase; Reviewed

Probab=86.72  E-value=14  Score=39.74  Aligned_cols=132  Identities=12%  Similarity=0.164  Sum_probs=78.6

Q ss_pred             ceeEEEEEe---CCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHh-h-
Q 048063          291 GYSIVSVDC---KDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIE-R-  365 (484)
Q Consensus       291 ~~t~V~V~~---~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~-r-  365 (484)
                      +.+.|.+.+   .+++|+++++...|++.|++|.--  . .+. .--+|++...+-.    ...+..+.+.|...+. . 
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~-ss~-~sis~~v~~~~~~----~a~~~~l~~el~~~~~~~~  378 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--P-SGI-DDLSIIIRERQLT----PKKEDEILAEIKQELNPDE  378 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--c-CCC-cEEEEEEeHHHhh----HHHHHHHHHHHHHhhCCce
Confidence            445666664   678999999999999999999874  2 211 2124555442210    0011333333433321 0 


Q ss_pred             -cc-CCceEEEEEec---CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063          366 -RV-CEGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI  436 (484)
Q Consensus       366 -r~-~~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L  436 (484)
                       .. ..-..|.+.+.   ++||+++++-.+|.++||+|....-.+. + ..=.|.|.+.+.    ....+.|.+++
T Consensus       379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~S-e-~~Is~vV~~~d~----~~av~~LH~~f  448 (454)
T PRK09034        379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSS-E-ISIMFGVKNEDA----EKAVKAIYNAF  448 (454)
T ss_pred             EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCC-c-ceEEEEEcHHHH----HHHHHHHHHHH
Confidence             01 12467888654   7899999999999999999998864332 1 222455643211    22455666666

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=86.52  E-value=4.9  Score=32.64  Aligned_cols=62  Identities=10%  Similarity=0.103  Sum_probs=39.8

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccC
Q 048063           39 VVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS-DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTT  107 (484)
Q Consensus        39 ~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~  107 (484)
                      .+.|.-||+||-|++++.+|+  +.||.+..... ..+.+--.+.+...++     ++..+.+.+.|.+.
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~-----~~~~~~i~~~L~~~   65 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG-----AEELAELLEDLKSA   65 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc-----HHHHHHHHHHHHHC
Confidence            578889999999999999999  77888655422 2233332233332211     34567777777654

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=86.50  E-value=25  Score=40.87  Aligned_cols=115  Identities=16%  Similarity=0.183  Sum_probs=72.0

Q ss_pred             CeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCC
Q 048063           36 DCTVVKVDSV---SKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPS  112 (484)
Q Consensus        36 ~~t~I~V~~~---DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~  112 (484)
                      +.+.|+|.+.   +++|+++++..+|+++|+||.-...++. .. --.|.|...+.     +...+.|.+.+........
T Consensus       314 dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssS-e~-sIsf~V~~~d~-----~~av~~L~~~f~~el~~~~  386 (819)
T PRK09436        314 NMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSS-EY-SISFCVPQSDA-----AKAKRALEEEFALELKEGL  386 (819)
T ss_pred             CEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCC-Cc-eEEEEEeHHHH-----HHHHHHHHHHHHHHhccCC
Confidence            5667888754   6899999999999999999975443332 22 12355543111     1233444444322110001


Q ss_pred             ccccccccceeeecCCCCCCeEEEEEEec---CCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063          113 SAVAKTYTNKAVFGSEYPSEHTAIEMTGT---DRPGLFSEISAALADLHCNIVEAHAWS  168 (484)
Q Consensus       113 ~~~~~~~~~v~v~~~~~~~~~t~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~A~i~T  168 (484)
                            ...++ +    ..+...|.|.+.   ++||+++++..+|.+.|+||....-.+
T Consensus       387 ------~~~i~-~----~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isqgs  434 (819)
T PRK09436        387 ------LEPLE-V----EENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGS  434 (819)
T ss_pred             ------cceEE-E----eCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEecc
Confidence                  11233 2    235778888875   789999999999999999998765333

>PRK06349 homoserine dehydrogenase; Provisional

Probab=86.40  E-value=2.8  Score=44.76  Aligned_cols=63  Identities=17%  Similarity=0.275  Sum_probs=45.9

Q ss_pred             ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063          370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI  436 (484)
Q Consensus       370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L  436 (484)
                      .|.|.+...|+||.|+.|+.+|.+++++|.+..-.........++++++.-    +....+++..+|
T Consensus       348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~----~e~~l~~~i~~L  410 (426)
T PRK06349        348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHET----SEAALRAALAAI  410 (426)
T ss_pred             eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeC----CHHHHHHHHHHH
Confidence            588999999999999999999999999999886554333455667776531    233444444555

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=86.34  E-value=4.2  Score=45.87  Aligned_cols=76  Identities=13%  Similarity=0.181  Sum_probs=52.2

Q ss_pred             EEEEecCC-CCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHH
Q 048063           26 RVCIDNES-MEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS-DAGWFMDVFHVKDEHGNKLTDQKVINYIQQA  103 (484)
Q Consensus        26 ~V~i~~~~-~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~  103 (484)
                      .|.+.... ..-.+.|.|.+.||+|+|++++.+|+..+.||......+ .++.+.-.|.+.      +.+-..+..|...
T Consensus       615 ~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~------v~n~~~L~~i~~~  688 (701)
T COG0317         615 DVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE------VKNLNHLGRVLAR  688 (701)
T ss_pred             EEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE------ECcHHHHHHHHHH
Confidence            34555553 234469999999999999999999999999999988755 444444334443      2223456666666


Q ss_pred             HccC
Q 048063          104 IGTT  107 (484)
Q Consensus       104 L~~~  107 (484)
                      |...
T Consensus       689 l~~~  692 (701)
T COG0317         689 LKQL  692 (701)
T ss_pred             HhcC
Confidence            6543

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=86.08  E-value=4.7  Score=40.51  Aligned_cols=51  Identities=12%  Similarity=0.214  Sum_probs=43.1

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeC
Q 048063          132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQ  182 (484)
Q Consensus       132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~  182 (484)
                      ..|.|-+..+|+||-|+++-++|+.+|||........ .+....=.|||.-.
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~e  244 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIE  244 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEe
Confidence            5888888999999999999999999999999888765 44556678888765

>PRK08818 prephenate dehydrogenase; Provisional

Probab=85.98  E-value=1.6  Score=45.77  Aligned_cols=47  Identities=17%  Similarity=0.325  Sum_probs=38.1

Q ss_pred             ceEEEEEec-CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEE
Q 048063          370 GVRLELCAA-NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLR  417 (484)
Q Consensus       370 ~t~leV~a~-DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~  417 (484)
                      .+.+.+.-. |+||.|++|+.+|+++||||.+..+ ......+-.|+|.
T Consensus       295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~  342 (370)
T PRK08818        295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIG  342 (370)
T ss_pred             ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEE
Confidence            577788885 9999999999999999999999998 3333344458884

>PRK08818 prephenate dehydrogenase; Provisional

Probab=85.52  E-value=1.9  Score=45.15  Aligned_cols=50  Identities=16%  Similarity=0.174  Sum_probs=39.7

Q ss_pred             CeEEEEEEec-CCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeC
Q 048063          132 EHTAIEMTGT-DRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQ  182 (484)
Q Consensus       132 ~~t~i~V~~~-DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~  182 (484)
                      ..+.|.+.-+ |+||-|++|+.+|+.+|+||.+-.+ .......-.|+|.-.
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~  344 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFE  344 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEe
Confidence            5778888886 9999999999999999999999998 333223333888765

>PLN02551 aspartokinase

Probab=85.49  E-value=46  Score=36.59  Aligned_cols=139  Identities=7%  Similarity=0.138  Sum_probs=80.0

Q ss_pred             CeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHH-HHHHHHccCCCCC
Q 048063           36 DCTVVKVDSV---SKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVIN-YIQQAIGTTGEIP  111 (484)
Q Consensus        36 ~~t~I~V~~~---DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~-~L~~~L~~~~~~~  111 (484)
                      +.+.|+|.+.   +.+|.++++...|.++|++|.--  ++..  .--.|.|...+-.   ..+.++ .+++.+.+..   
T Consensus       365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe--~sIs~~v~~~~~~---~~~~i~~~l~~l~~el~---  434 (521)
T PLN02551        365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE--VSISLTLDPSKLW---SRELIQQELDHLVEELE---  434 (521)
T ss_pred             CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC--CEEEEEEehhHhh---hhhhHHHHHHHHHHHhh---
Confidence            4567777655   68999999999999999999854  2222  1223565432111   011111 1222221110   


Q ss_pred             CccccccccceeeecCCCCCCeEEEEEEec--CCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCC
Q 048063          112 SSAVAKTYTNKAVFGSEYPSEHTAIEMTGT--DRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPID  189 (484)
Q Consensus       112 ~~~~~~~~~~v~v~~~~~~~~~t~i~V~~~--DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~  189 (484)
                      .+      ..+. +.    .+...|.|.+.  ..||+++++..+|+..|+||......+..   ..+-.|.+.       
T Consensus       435 ~~------~~V~-v~----~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSe---inIS~vV~~-------  493 (521)
T PLN02551        435 KI------AVVN-LL----QGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASK---VNISLIVND-------  493 (521)
T ss_pred             cC------CeEE-Ee----CCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCC---cEEEEEEeH-------
Confidence            11      1233 22    35667777754  68999999999999999999877644322   333333332       


Q ss_pred             ChhHHHHHHHHHHHHhcc
Q 048063          190 DPGRLATIEEYITTVLRA  207 (484)
Q Consensus       190 d~~~~~~l~~~L~~~L~g  207 (484)
                        ...++.-++|++.+-+
T Consensus       494 --~d~~~Av~aLH~~Ff~  509 (521)
T PLN02551        494 --DEAEQCVRALHSAFFE  509 (521)
T ss_pred             --HHHHHHHHHHHHHHhc
Confidence              2345556667766643

>PRK06349 homoserine dehydrogenase; Provisional

Probab=85.12  E-value=4  Score=43.57  Aligned_cols=53  Identities=17%  Similarity=0.216  Sum_probs=42.7

Q ss_pred             CCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeC
Q 048063          130 PSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQ  182 (484)
Q Consensus       130 ~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~  182 (484)
                      ....+.|.+...|+||.|++|+++|.++++||.+.......+....++++++.
T Consensus       345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~  397 (426)
T PRK06349        345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE  397 (426)
T ss_pred             hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe
Confidence            34567889999999999999999999999999988765444455677777775

>PRK12483 threonine dehydratase; Reviewed

Probab=85.01  E-value=45  Score=36.69  Aligned_cols=134  Identities=14%  Similarity=0.137  Sum_probs=74.3

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEeeCCCCCCCcHHHH-HHHHHHHccCC-CCCC
Q 048063           36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS-DAGWFMDVFHVKDEHGNKLTDQKVI-NYIQQAIGTTG-EIPS  112 (484)
Q Consensus        36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g~~~d~F~V~d~~g~~~~~~~~~-~~L~~~L~~~~-~~~~  112 (484)
                      ....+.|.-+||||-|.+++.+|...  ||.+-.... ..+. ..++....-.+     .+.. +.|.+.|.... ....
T Consensus       344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~-~~v~v~ie~~~-----~~~~~~~i~~~l~~~g~~~~d  415 (521)
T PRK12483        344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADARE-AHLFVGVQTHP-----RHDPRAQLLASLRAQGFPVLD  415 (521)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCe-eEEEEEEEeCC-----hhhhHHHHHHHHHHCCCCeEE
Confidence            44678899999999999999999988  898777643 2233 33343333222     2333 67777775532 0000


Q ss_pred             ccccc-ccccee-eecCC--CCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEE
Q 048063          113 SAVAK-TYTNKA-VFGSE--YPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAY  178 (484)
Q Consensus       113 ~~~~~-~~~~v~-v~~~~--~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~  178 (484)
                      +.... .+..+. .+.-.  ....--.+.|.-+.|||-|.+.+..|... .||..-+=.-.+.....+|.
T Consensus       416 lsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~-~niTeF~YR~~~~~~a~v~v  484 (521)
T PRK12483        416 LTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPR-WNISLFHYRNHGAADGRVLA  484 (521)
T ss_pred             CCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCC-cceeeeeecCCCCCceEEEE
Confidence            00000 000000 01101  12245678888899999999999999852 34433332223444445554

>PRK08198 threonine dehydratase; Provisional

Probab=84.88  E-value=6.9  Score=41.30  Aligned_cols=38  Identities=18%  Similarity=0.378  Sum_probs=33.8

Q ss_pred             CCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEE
Q 048063          130 PSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAW  167 (484)
Q Consensus       130 ~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~  167 (484)
                      ......+.|.-+|+||-|+++..+++.+|.||.+....
T Consensus       324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            44566899999999999999999999999999988765

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=84.35  E-value=3.9  Score=35.57  Aligned_cols=50  Identities=8%  Similarity=0.040  Sum_probs=39.7

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeeEEEEEEEeC
Q 048063          133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN-DRLACVAYVSDQ  182 (484)
Q Consensus       133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~-~~~~dvF~V~~~  182 (484)
                      .+.+.+..+|+||-|+++-..|+.+|+|+......... ....=.|||.-.
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdie   91 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCE   91 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEE
Confidence            46777777999999999999999999999988876643 334456777654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=83.74  E-value=7.8  Score=40.52  Aligned_cols=65  Identities=18%  Similarity=0.210  Sum_probs=44.4

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-----cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063          132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-----HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT  203 (484)
Q Consensus       132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-----~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~  203 (484)
                      ....+.|.-+||||.|++++..++++|.||.+..-..     ..+.+.-.+.+...       +++..+.|.+.|.+
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-------~~~~~~~i~~~L~~  373 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-------GKEHLDEILKILRD  373 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            4458999999999999999999999999998885431     12333334444332       13455566666544

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK09181 aspartate kinase; Validated

Probab=83.64  E-value=40  Score=36.64  Aligned_cols=105  Identities=15%  Similarity=0.220  Sum_probs=67.5

Q ss_pred             CeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCC
Q 048063           36 DCTVVKVDSV---SKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPS  112 (484)
Q Consensus        36 ~~t~I~V~~~---DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~  112 (484)
                      +.+.|+|.+.   +.+|+.+++.++|.++|++|.  -+.+..  .--.|.|.+.  .     ...+.+.+.|...     
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~--~-----~~~~~~~~~L~~~-----  391 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS--L-----KTLKRVIAELEKR-----  391 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC--h-----HHHHHHHHHHHHh-----
Confidence            4567777543   689999999999999999997  333322  1223555431  1     1223333334321     


Q ss_pred             ccccccccceeeecCCCCCCeEEEEEEecC--CCchHHHHHHHHHhCCCeEEEEEE
Q 048063          113 SAVAKTYTNKAVFGSEYPSEHTAIEMTGTD--RPGLFSEISAALADLHCNIVEAHA  166 (484)
Q Consensus       113 ~~~~~~~~~v~v~~~~~~~~~t~i~V~~~D--rpGLL~~Ia~vL~~~glnI~~A~i  166 (484)
                      +.    ...+.      ..+...|.|.+..  +||+.+++..+|++.|+||..-..
T Consensus       392 ~~----~~~i~------~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q  437 (475)
T PRK09181        392 YP----NAEVT------VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ  437 (475)
T ss_pred             cC----CceEE------ECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence            21    01121      1457788888754  899999999999999999987653

>PRK06545 prephenate dehydrogenase; Validated

Probab=82.89  E-value=4.2  Score=42.32  Aligned_cols=47  Identities=15%  Similarity=0.270  Sum_probs=39.9

Q ss_pred             ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEE
Q 048063          370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYL  416 (484)
Q Consensus       370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v  416 (484)
                      .|.|.|.-.||||-|+.|+..+.+.||||.+.+|.-..+...-++.+
T Consensus       290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~  336 (359)
T PRK06545        290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQI  336 (359)
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEE
Confidence            59999999999999999999999999999999997555554444554

>TIGR00657 asp_kinases aspartate kinase

Probab=82.85  E-value=67  Score=34.34  Aligned_cols=108  Identities=19%  Similarity=0.218  Sum_probs=64.9

Q ss_pred             CeEEEEEEecCC--CcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCc
Q 048063           36 DCTVVKVDSVSK--QGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSS  113 (484)
Q Consensus        36 ~~t~I~V~~~Dr--pGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~  113 (484)
                      +...|+|.+.+-  +|.++++...|.++|++|.-....+.. .. -.|.|...+.     +...+.|.. +....   . 
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se-~s-Is~~I~~~~~-----~~a~~~L~~-~~~~~---~-  368 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE-TS-ISFTVDKEDA-----DQAKTLLKS-ELNLS---A-  368 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC-ce-EEEEEEHHHH-----HHHHHHHHH-HHHhc---C-
Confidence            345666664332  799999999999999999855432322 11 2355542110     112222211 11110   0 


Q ss_pred             cccccccceeeecCCCCCCeEEEEEEe---cCCCchHHHHHHHHHhCCCeEEEEE
Q 048063          114 AVAKTYTNKAVFGSEYPSEHTAIEMTG---TDRPGLFSEISAALADLHCNIVEAH  165 (484)
Q Consensus       114 ~~~~~~~~v~v~~~~~~~~~t~i~V~~---~DrpGLL~~Ia~vL~~~glnI~~A~  165 (484)
                           ...+. +    ..+.+.|.|.+   .++||+++++...|+.+|+||....
T Consensus       369 -----~~~I~-~----~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       369 -----LSSVE-V----EKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             -----cceEE-E----cCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence                 12233 2    23567888865   4889999999999999999997765

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK06382 threonine dehydratase; Provisional

Probab=82.59  E-value=6.6  Score=41.58  Aligned_cols=65  Identities=15%  Similarity=0.251  Sum_probs=47.0

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-----ecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063           36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYIS-----SDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT  106 (484)
Q Consensus        36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~It-----t~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~  106 (484)
                      ..+.+.|..+|+||-|++++.+|.++|+||.+-...     ...+...-+|.|... +     ++..+.|.+.|.+
T Consensus       329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-~-----~~~~~~v~~~L~~  398 (406)
T PRK06382        329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-G-----QDHLDRILNALRE  398 (406)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-C-----HHHHHHHHHHHHH
Confidence            457899999999999999999999999999977653     234555555666432 1     2344566666654

>PRK09181 aspartate kinase; Validated

Probab=82.06  E-value=16  Score=39.65  Aligned_cols=102  Identities=18%  Similarity=0.141  Sum_probs=69.5

Q ss_pred             ceeEEEEEeC---CCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh--
Q 048063          291 GYSIVSVDCK---DRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER--  365 (484)
Q Consensus       291 ~~t~V~V~~~---DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r--  365 (484)
                      +.+.|.|.+.   +.+|+.+++..+|.+.+++|.  -+.+..  .--+|.|...  .     ...+++.+.|.+.+..  
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~--~-----~~~~~~~~~L~~~~~~~~  396 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS--L-----KTLKRVIAELEKRYPNAE  396 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC--h-----HHHHHHHHHHHHhcCCce
Confidence            5667777554   789999999999999999997  233322  1123555332  1     2345555555554410  


Q ss_pred             -ccCCceEEEEEecC--CcchHHHHHHHHHhCCceEEEEEe
Q 048063          366 -RVCEGVRLELCAAN--RVGLLSDITRVLRENGLAVVRAHV  403 (484)
Q Consensus       366 -r~~~~t~leV~a~D--RpGLL~~It~~f~~~gi~I~~A~i  403 (484)
                       .......|.|++..  +||+.+.+..+|.+.||||....-
T Consensus       397 i~~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q  437 (475)
T PRK09181        397 VTVRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ  437 (475)
T ss_pred             EEECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence             12335778888864  899999999999999999987664

>PLN02317 arogenate dehydratase

Probab=81.28  E-value=5.9  Score=41.61  Aligned_cols=54  Identities=13%  Similarity=0.233  Sum_probs=41.8

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe---------------eeeEEEEEcCCCCCCC
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK---------------SVNAFYLRDISGNEVD  425 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~---------------a~d~F~v~~~~g~~l~  425 (484)
                      |.|-+.-.|+||.|+++-.+|+.+|||+.+.+-+-...+               -+=.||| |-+|..-+
T Consensus       284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~~d  352 (382)
T PLN02317        284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASMAD  352 (382)
T ss_pred             EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEEcCcCC
Confidence            567777789999999999999999999999997765433               3447888 55675433

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=81.19  E-value=26  Score=32.40  Aligned_cols=110  Identities=13%  Similarity=0.169  Sum_probs=62.9

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEE-EecCCe-EEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCccc
Q 048063           38 TVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYI-SSDAGW-FMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAV  115 (484)
Q Consensus        38 t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~I-tt~~g~-~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~  115 (484)
                      -.+.+.-.|.||.+.++++.|+..|+||.+--+ .|++.. .--++.+.   |.    +...++|.+-|....+      
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g~----~~~~EQi~kQL~kLid------   71 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---GD----EQVLEQIIKQLNKLID------   71 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---CC----cchHHHHHHHHHhhcc------
Confidence            467888999999999999999999999998876 564333 33223332   21    2355666655544321      


Q ss_pred             cccccceeeecCC--CCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEE
Q 048063          116 AKTYTNKAVFGSE--YPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAH  165 (484)
Q Consensus       116 ~~~~~~v~v~~~~--~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~  165 (484)
                        ++.-+. +..+  -...-..+.+.+.--  ...++.+.-...+.+|.+..
T Consensus        72 --V~kV~d-~~~~~~veRel~LiKv~~~~~--~R~ei~~~~~ifr~~vvDvs  118 (163)
T COG0440          72 --VLKVLD-LTSEPHVERELALIKVSAEGS--ERGEIARITEIFRASVVDVS  118 (163)
T ss_pred             --ceeEEE-cCCcchhheeeEEEEEecCcc--chHHHHHHHHHhCceEEecC
Confidence              111111 1111  112233444444222  25567777777777776654

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=81.16  E-value=18  Score=41.94  Aligned_cols=102  Identities=9%  Similarity=0.158  Sum_probs=68.4

Q ss_pred             CceeEEEEEeC---CCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHH---
Q 048063          290 KGYSIVSVDCK---DRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAI---  363 (484)
Q Consensus       290 ~~~t~V~V~~~---DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l---  363 (484)
                      ++.+.|.|.+.   ++||+++++..+|.+.|++|.-...++.. .. -+|.|...         ..+...+.|.+.+   
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe-~s-Isf~V~~~---------d~~~av~~L~~~f~~e  381 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE-YS-ISFCVPQS---------DAAKAKRALEEEFALE  381 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC-ce-EEEEEeHH---------HHHHHHHHHHHHHHHH
Confidence            45678888764   78999999999999999999655433222 11 13444332         2233333344333   


Q ss_pred             -hh-cc------CCceEEEEEec---CCcchHHHHHHHHHhCCceEEEEE
Q 048063          364 -ER-RV------CEGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAH  402 (484)
Q Consensus       364 -~r-r~------~~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~  402 (484)
                       .. ..      .....|.|.+.   ++||+++++..+|.+.||+|....
T Consensus       382 l~~~~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is  431 (819)
T PRK09436        382 LKEGLLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA  431 (819)
T ss_pred             hccCCcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence             21 11      22577888886   789999999999999999998665

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=80.93  E-value=3.7  Score=45.11  Aligned_cols=61  Identities=15%  Similarity=0.361  Sum_probs=45.8

Q ss_pred             ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC--CeeeeEEEEEcCCCCCCChHHHHHHHH
Q 048063          370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKG--EKSVNAFYLRDISGNEVDMDFVESMKK  434 (484)
Q Consensus       370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g--~~a~d~F~v~~~~g~~l~~~~~~~l~~  434 (484)
                      .+.+=+.-.|+||.+..|+..|.+++|||...++....  +.+--+|-+    .++++++.+++|++
T Consensus       452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~----D~~v~~~~l~~i~~  514 (526)
T PRK13581        452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV----DDPVPEEVLEELRA  514 (526)
T ss_pred             ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC----CCCCCHHHHHHHhc
Confidence            45566677999999999999999999999999987643  333333333    44667788888875

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=80.83  E-value=3.2  Score=45.56  Aligned_cols=52  Identities=19%  Similarity=0.266  Sum_probs=40.9

Q ss_pred             CCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe--cCCeeEEEEEE
Q 048063          128 EYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS--HNDRLACVAYV  179 (484)
Q Consensus       128 ~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T--~~~~~~dvF~V  179 (484)
                      +-.+....+.+...|+||.+..|+.+|.++++||...++.-  .++.+.-++.+
T Consensus       447 ~~~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~  500 (526)
T PRK13581        447 DAKPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV  500 (526)
T ss_pred             EeeCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence            34456677777889999999999999999999999999876  34455555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	484
1u8s_A	192	Glycine cleavage system transcriptional repressor,	4e-07
1u8s_A	192	Glycine cleavage system transcriptional repressor,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	8e-05
2nyi_A	195	Unknown protein; protein structure initiative, PSI	2e-04
2nyi_A	195	Unknown protein; protein structure initiative, PSI	4e-04
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	3e-04

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 49.7 bits (118), Expect = 4e-07
 Identities = 17/140 (12%), Positives = 43/140 (30%), Gaps = 9/140 (6%)

Query: 33  SMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLT 92
           S+    V+      + G+  E+V+++T     I  S I+     F  +  +     N   
Sbjct: 2   SLTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITR 61

Query: 93  DQKVINYIQQAIGTTGEIPSSAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISA 152
            +  +  + Q            +       +    +  +    + +   D+ GL  + + 
Sbjct: 62  VETTLPLLGQQHD---------LITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQ 112

Query: 153 ALADLHCNIVEAHAWSHNDR 172
             A     +    A + +  
Sbjct: 113 FFAQRQIGMASLSAQTISKD 132

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 131 SEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVS 180
           ++H  I   GTDRPG+ +E+   +    CNI+++           +  +S
Sbjct: 4   TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS 53

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 61/371 (16%), Positives = 107/371 (28%), Gaps = 106/371 (28%)

Query: 154 LADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATAERSP 213
           + +  C  V+       D    +  +S +  D  I     ++     +   L +  E   
Sbjct: 30  VDNFDCKDVQ-------DMPKSI--LSKEEIDHIIMSKDAVSGTL-RLFWTLLSKQEE-- 77

Query: 214 SETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGD 273
                    V+   F   + ++ N +     LM  ++    Q         PS       
Sbjct: 78  --------MVQK--F-VEEVLRINYK----FLMSPIKTEQRQ---------PS------- 106

Query: 274 EEGMRRTAVYIESCEEKGYSIVSVDCKD---RPRLMF---DTVCTLTDMQYVVFHASIGC 327
                 T +YIE   ++ Y+   V  K    R +        +  L   + V+    +G 
Sbjct: 107 ----MMTRMYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161

Query: 328 HG----------DYAFQEYFIRHIDGYALN--TEGEKERVIKCLEAAIERRVCEGVRLEL 375
            G           Y  Q      I  + LN       E V++ L+  + +          
Sbjct: 162 -GKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 376 CAANRVGLLSDITRVLR--------ENGLAVVRAHVATKGEKSVNAFYL--------RD- 418
            ++N    +  I   LR        EN L V+  +V     K+ NAF L        R  
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQNA--KAWNAFNLSCKILLTTRFK 275

Query: 419 -------------ISGNEVDMDFVESMKKEILGPIDLAVKNDSRSTSPSPPDRSPTRFSL 465
                        IS +   M       K +L      +    +         +P R S+
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL---KYLDCRPQDLPREVLTTNPRRLSI 332

Query: 466 -GDLLRSQLER 475
             + +R  L  
Sbjct: 333 IAESIRDGLAT 343

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 8e-05
 Identities = 87/468 (18%), Positives = 138/468 (29%), Gaps = 132/468 (28%)

Query: 22  GPTC---RVCIDN--ESMEDCTV--VKVDSVSKQGLLLEMVQVL---TDMNLTISKSY-- 69
           G T     VC+    +   D  +  + + + +    +LEM+Q L    D N T    +  
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 70  -----ISSDAGWFMDVFHVKDEHGNKLT------DQKVINY--IQ-QAIGTT--GEIPSS 113
                I S       +   K  + N L       + K  N   +  + + TT   ++   
Sbjct: 222 NIKLRIHSIQAELRRLLKSKP-YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 114 AVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSE-ISAALADL----------HCNIV 162
             A T T           +H ++ +T  +   L  + +     DL            +I+
Sbjct: 281 LSAATTT-------HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 163 EAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATAERS--------PS 214
                             D       D   +L TI E    VL     R         P 
Sbjct: 334 AESIRDGLATW-------DNWKHVNCD---KLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 215 ETHINPLQVKANGFPC---GDCIKTNVER---RLHQLMLSVRDFDGQCGPNMSRSTPS-- 266
             HI P  +           D IK++V     +LH+  L  +          + S PS  
Sbjct: 384 SAHI-PTILL-----SLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-----ESTISIPSIY 432

Query: 267 --SAVGFGDEEGMRRTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDM---QYVVF 321
               V   +E  + R+   ++      Y+I      D      D +    D     ++  
Sbjct: 433 LELKVKLENEYALHRSI--VDH-----YNIPKTFDSD------DLIPPYLDQYFYSHIGH 479

Query: 322 HASIGCHG-----------DYAFQEYFIRHIDGYALNTEGEK----------ERVIKCLE 360
           H     H            D+ F E  IRH D  A N  G            +  I   +
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRH-DSTAWNASGSILNTLQQLKFYKPYICDND 538

Query: 361 AAIERRVCEGVR-LELCAANRVGLLSDITRVLR-----ENGLAVVRAH 402
              ER V   +  L     N +   S  T +LR     E+      AH
Sbjct: 539 PKYERLVNAILDFLPKIEENLI--CSKYTDLLRIALMAEDEAIFEEAH 584

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 40.3 bits (95), Expect = 8e-05
 Identities = 7/44 (15%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 127 SEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN 170
           +++ +    I + G D+ G+ ++I+  ++    NI      + +
Sbjct: 2   TDFLAG---IRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKD 42

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Length = 195

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 12/55 (21%), Positives = 25/55 (45%)

Query: 131 SEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTD 185
           ++   + + G+DR G+  + S AL ++  N+  +         A +  VS  + D
Sbjct: 3   TQSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKD 57

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Length = 195

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 8/134 (5%)

Query: 33  SMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLT 92
           S     VV V    + G++ +    L +++  +  S ++   G F  +  V     +   
Sbjct: 1   SETQSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKL 60

Query: 93  DQKVINYIQQAIGTTGEIPSSAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISA 152
            Q  +         +         +  ++ A       +    + + G D  G+   ++A
Sbjct: 61  IQSALESALPGFQIS--------TRRASSVAERHVSPDTREYELYVEGPDSEGIVEAVTA 112

Query: 153 ALADLHCNIVEAHA 166
            LA    NIVE   
Sbjct: 113 VLAKKGANIVELET 126

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Length = 91

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 136 IEMTGTDRPGLFSEISAALADLHCNIVE 163
           I + G D+ G+ + +S  +A+L  NI +
Sbjct: 8   ITVVGKDKSGIVAGVSGKIAELGLNIDD 35

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	484
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.74
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.72
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.66
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.64
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.84
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.67
2f06_A	144	Conserved hypothetical protein; structural genomic	98.45
2f06_A	144	Conserved hypothetical protein; structural genomic	98.27
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.09
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	97.92
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.84
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.74
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.72
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.46
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.42
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.33
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.32
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.23
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.22
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.16
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.08
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	96.94
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	96.93
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	96.88
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	96.85
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	96.84
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.83
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	96.82
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	96.78
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.64
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	96.6
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.51
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.21
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.15
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.09
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.06
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.02
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	95.76
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	95.73
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	95.6
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.46
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.35
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.34
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.01
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	94.92
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	94.74
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	93.21
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	91.08
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	90.59
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	90.09
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	89.97
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	89.7
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	88.9
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	88.77
3luy_A	329	Probable chorismate mutase; structural genomics, A	88.54
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	87.99
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	87.01
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	86.07
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	84.97
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	83.38
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	83.36
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	82.97
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	82.08
3luy_A	329	Probable chorismate mutase; structural genomics, A	81.67
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	80.13

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.74  E-value=4.2e-17  Score=153.55  Aligned_cols=157  Identities=15%  Similarity=0.146  Sum_probs=114.9

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCccc
Q 048063           36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAV  115 (484)
Q Consensus        36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~  115 (484)
                      ..++|+|+|+||||||++++++|+++|+||++|++++..|.+.-.|.|..+..   ....+++.|++.|.....  .+..
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~---~~~~~~~~l~~~L~~~~~--~~~~   78 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAK---DGKLIQSALESALPGFQI--STRR   78 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSS---SSHHHHHHHHHHSTTCEE--EEEE
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCc---cchhHHHHHHHHHHHHHH--hcCC
Confidence            35799999999999999999999999999999999665454444788865421   223467888888864321  1100


Q ss_pred             cccccce--eeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC--CeeEEEEEEEeCCCCCCCCCh
Q 048063          116 AKTYTNK--AVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN--DRLACVAYVSDQSTDTPIDDP  191 (484)
Q Consensus       116 ~~~~~~v--~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~--~~~~dvF~V~~~~~g~~i~d~  191 (484)
                         ...+  . -. ......++|+|.|+|||||+++|+++|+++|+||.+++.+|.+  ++..+.|+++.. .+.+  +.
T Consensus        79 ---~~~~~~~-~~-~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~-~~~~--~~  150 (195)
T 2nyi_A           79 ---ASSVAER-HV-SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSR-VAFP--FP  150 (195)
T ss_dssp             ---CCCC-----C-CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEE-EEEE--GG
T ss_pred             ---eEEEEeC-Cc-CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEE-EEcC--CC
Confidence               0000  0 01 2344678999999999999999999999999999999999977  666789998776 3433  23


Q ss_pred             hHHHHHHHHHHHHhc
Q 048063          192 GRLATIEEYITTVLR  206 (484)
Q Consensus       192 ~~~~~l~~~L~~~L~  206 (484)
                      .. +.|+++|.....
T Consensus       151 ~~-~~l~~~l~~~a~  164 (195)
T 2nyi_A          151 LY-QEVVTALSRVEE  164 (195)
T ss_dssp             GH-HHHHHHHHHHHH
T ss_pred             cc-HHHHHHHHHHHH
Confidence            45 888888886553

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.72  E-value=2.2e-17  Score=155.48  Aligned_cols=127  Identities=17%  Similarity=0.191  Sum_probs=101.0

Q ss_pred             ceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecC-CeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh----
Q 048063          291 GYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHG-DYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER----  365 (484)
Q Consensus       291 ~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~-g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r----  365 (484)
                      ..++|+|+|+||||||++++.+|+++||||.+|++.+.+ ++++ .|.+.... .  ....+.+.|++.|......    
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m-~~~v~~~~-~--~~~~~~~~l~~~L~~~~~~~~~~   79 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVSLNA-K--DGKLIQSALESALPGFQISTRRA   79 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEESS-S--SSHHHHHHHHHHSTTCEEEEEEC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEE-EEEEEecC-c--cchhHHHHHHHHHHHHHHhcCCe
Confidence            457899999999999999999999999999999996554 5776 66665432 1  2223567777777654311    


Q ss_pred             --------c-cCCceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC--CeeeeEEEEEcCCC
Q 048063          366 --------R-VCEGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKG--EKSVNAFYLRDISG  421 (484)
Q Consensus       366 --------r-~~~~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g--~~a~d~F~v~~~~g  421 (484)
                              . ....+.|+|.|.|||||++.||++|+++|+||..+++.|.+  +++++.|++...-+
T Consensus        80 ~~~~~~~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~  146 (195)
T 2nyi_A           80 SSVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVA  146 (195)
T ss_dssp             CCC----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEE
T ss_pred             EEEEeCCcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEE
Confidence                    0 11269999999999999999999999999999999999998  77899999876543

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.66  E-value=1.6e-15  Score=142.03  Aligned_cols=156  Identities=12%  Similarity=0.122  Sum_probs=109.4

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCC--CCCcc
Q 048063           37 CTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGE--IPSSA  114 (484)
Q Consensus        37 ~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~--~~~~~  114 (484)
                      ..+|+|+|+||||+|++++++|+++|+||+++++++..|.+.-.|.|..+       +..++.|++.|.....  .-.+.
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~~~~~~~~~~~   78 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-------PSNITRVETTLPLLGQQHDLITM   78 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-------HHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC-------CCCHHHHHHHHHHHHHhcCCEEE
Confidence            47899999999999999999999999999999997766766668888643       1245556655543110  00000


Q ss_pred             ccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCC----eeEEEEEEEeCCCCCCCCC
Q 048063          115 VAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHND----RLACVAYVSDQSTDTPIDD  190 (484)
Q Consensus       115 ~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~----~~~dvF~V~~~~~g~~i~d  190 (484)
                      ....+.    -.+......++|+|.++||||++++|+++|+++|+||.+++.+|.+.    +..+.|+++.. .+.+  +
T Consensus        79 ~~~~~~----~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~-~~~~--~  151 (192)
T 1u8s_A           79 MKRTSP----HDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAIS-ARVD--S  151 (192)
T ss_dssp             EEEECC----CCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEE-EEEC--T
T ss_pred             EEeCCC----CCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEE-EeCC--C
Confidence            000000    01133446789999999999999999999999999999999999874    56788988775 3332  2


Q ss_pred             hhHHHHHHHHHHHHhc
Q 048063          191 PGRLATIEEYITTVLR  206 (484)
Q Consensus       191 ~~~~~~l~~~L~~~L~  206 (484)
                      +...+.|+++|.....
T Consensus       152 ~~~~~~l~~~l~~~~~  167 (192)
T 1u8s_A          152 GCNLMQLQEEFDALCT  167 (192)
T ss_dssp             TSCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            3356788888886543

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.64  E-value=3.9e-15  Score=139.42  Aligned_cols=121  Identities=16%  Similarity=0.224  Sum_probs=95.3

Q ss_pred             ceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHh-----
Q 048063          291 GYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGD-YAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIE-----  364 (484)
Q Consensus       291 ~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g-~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~-----  364 (484)
                      ...+|+|+|+||||++++++.+|+++|+||.++++.+..| +++ .|.+...       ....+.|++.|.+...     
T Consensus         5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~-~~~v~~~-------~~~~~~l~~~L~~~~~~~~~~   76 (192)
T 1u8s_A            5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTL-LMLISGS-------PSNITRVETTLPLLGQQHDLI   76 (192)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEEC-------HHHHHHHHHHHHHHHHHHTCE
T ss_pred             cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEE-EEEEecC-------CCCHHHHHHHHHHHHHhcCCE
Confidence            3578999999999999999999999999999999966665 444 6666432       1356777777766442     


Q ss_pred             ---hccC--------CceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCC----eeeeEEEEEcC
Q 048063          365 ---RRVC--------EGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGE----KSVNAFYLRDI  419 (484)
Q Consensus       365 ---rr~~--------~~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~----~a~d~F~v~~~  419 (484)
                         ++.+        ..++|+|.+.||||++++|+++|+++|+||.+++..|.++    ++++.|+++..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~  146 (192)
T 1u8s_A           77 TMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAIS  146 (192)
T ss_dssp             EEEEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEE
T ss_pred             EEEEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEE
Confidence               1111        2589999999999999999999999999999999999985    58999998664

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.84  E-value=8.2e-08  Score=99.65  Aligned_cols=154  Identities=12%  Similarity=0.052  Sum_probs=100.7

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCC--CCCc
Q 048063           36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGE--IPSS  113 (484)
Q Consensus        36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~--~~~~  113 (484)
                      ...+|+|.|+|||||.+.++++|+++|+||++++.+..+|++.-...+.-+... .    ..+.|++.|.....  .-.+
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-~----~~~~l~~~l~~~~~~~~~~~   85 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-A----DGPALRHDVEAAIRKVGLDV   85 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-H----TSHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-C----CHHHHHHHHHHHHHHcCeEE
Confidence            457899999999999999999999999999999998888887666555432110 0    12444444432100  0001


Q ss_pred             cccccccceeeecCCCCCCeEEEEEEecC-CCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChh
Q 048063          114 AVAKTYTNKAVFGSEYPSEHTAIEMTGTD-RPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPG  192 (484)
Q Consensus       114 ~~~~~~~~v~v~~~~~~~~~t~i~V~~~D-rpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~  192 (484)
                      ..........    .....+..+++.++| ++|++.+|+.+|+.+|+||.+.+..+....+.-.|++..+    +    .
T Consensus        86 ~~~~~~~~~~----~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~----~----~  153 (415)
T 3p96_A           86 SIERSDDVPI----IREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVP----P----G  153 (415)
T ss_dssp             EEEECSSSCS----SCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECC----T----T
T ss_pred             EEEECCcccc----cCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCC----C----C
Confidence            0000001011    133468899999999 9999999999999999999999887743333333666433    1    1


Q ss_pred             HHHHHHHHHHHHhc
Q 048063          193 RLATIEEYITTVLR  206 (484)
Q Consensus       193 ~~~~l~~~L~~~L~  206 (484)
                      ..+.+++.|.+.+.
T Consensus       154 ~~~~l~~~l~~l~~  167 (415)
T 3p96_A          154 ADEALRTALNRVSS  167 (415)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhh
Confidence            23566777666543

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.67  E-value=3.9e-07  Score=94.56  Aligned_cols=123  Identities=7%  Similarity=-0.047  Sum_probs=86.5

Q ss_pred             ceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHH---HHh---
Q 048063          291 GYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEA---AIE---  364 (484)
Q Consensus       291 ~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~---~l~---  364 (484)
                      ...+|+|.|+||||+++.+++.|+++||||.+++..+.+|+.   |+.+..+....  ...++.|++.|..   .+.   
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f---~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~   85 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRL---TLGVLVCCPAD--VADGPALRHDVEAAIRKVGLDV   85 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEE---EEEEEEEECHH--HHTSHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEe---EEEEEEEecCC--cCCHHHHHHHHHHHHHHcCeEE
Confidence            456899999999999999999999999999999997777743   22222221100  0012455555543   231   


Q ss_pred             ------h--ccC--CceEEEEEecC-CcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEc
Q 048063          365 ------R--RVC--EGVRLELCAAN-RVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRD  418 (484)
Q Consensus       365 ------r--r~~--~~t~leV~a~D-RpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~  418 (484)
                            .  +.+  .++.+++.+.| +||++.+|+.+|.++|+||...+.-+......=.|++.-
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~  150 (415)
T 3p96_A           86 SIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSV  150 (415)
T ss_dssp             EEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEEC
T ss_pred             EEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeC
Confidence                  0  111  26899999999 999999999999999999999887773333333366643

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.45  E-value=1.1e-05  Score=71.29  Aligned_cols=110  Identities=17%  Similarity=0.164  Sum_probs=74.6

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCcccc
Q 048063           38 TVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYIS-SDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVA  116 (484)
Q Consensus        38 t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~It-t~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~~  116 (484)
                      ..|+|..+|+||.+++++++|++.|+||..-.+. +.+ ..+-.|.+.+        .   +..++.|...    .+.  
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~-~~~~~~~~~d--------~---~~a~~~L~~~----G~~--   68 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENAD-FGILRGIVSD--------P---DKAYKALKDN----HFA--   68 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSS-CEEEEEEESC--------H---HHHHHHHHHT----TCC--
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEeCC--------H---HHHHHHHHHc----CCe--
Confidence            5889999999999999999999999999977664 333 1122344321        2   2223334322    121  


Q ss_pred             ccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEE
Q 048063          117 KTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAY  178 (484)
Q Consensus       117 ~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~  178 (484)
                           +.        ...++.+..+|+||.+++++++|+++|+||.....+..+....-+|.
T Consensus        69 -----v~--------~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~  117 (144)
T 2f06_A           69 -----VN--------ITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIR  117 (144)
T ss_dssp             -----EE--------EEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEE
T ss_pred             -----Ee--------eeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEE
Confidence                 11        12467778899999999999999999999988776633344444443

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.27  E-value=2.6e-05  Score=68.87  Aligned_cols=112  Identities=11%  Similarity=0.099  Sum_probs=72.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhhccCCceE
Q 048063          293 SIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERRVCEGVR  372 (484)
Q Consensus       293 t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~rr~~~~t~  372 (484)
                      ..+.|..+|+||.+++++..|++.|+||..-.+....++..-.|.+        ++   .+..++.|++. .-......+
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~--------~d---~~~a~~~L~~~-G~~v~~~sv   74 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV--------SD---PDKAYKALKDN-HFAVNITDV   74 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE--------SC---HHHHHHHHHHT-TCCEEEEEE
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEe--------CC---HHHHHHHHHHc-CCeEeeeeE
Confidence            4678899999999999999999999999987774322222112321        12   22333333331 000111245


Q ss_pred             EEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEE
Q 048063          373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYL  416 (484)
Q Consensus       373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v  416 (484)
                      +-+.-.|+||.+++++++|+++||||.+......+.++.=.|-.
T Consensus        75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~  118 (144)
T 2f06_A           75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP  118 (144)
T ss_dssp             EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence            66677899999999999999999999876654233444444444

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.09  E-value=2e-05  Score=63.76  Aligned_cols=67  Identities=18%  Similarity=0.287  Sum_probs=52.6

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      ..+.|+|.++||||++++|+++|+++|+||.+....+..+.+.-.+.+.-+  +     ...++.|.+.|.+..
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~-----~~~l~~l~~~L~~~~   70 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--E-----KQDFTYLRNEFEAFG   70 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--S-----CCCHHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--C-----CCCHHHHHHHHHHHH
Confidence            357899999999999999999999999999999998876666666666443  2     124577888877643

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=97.92  E-value=8.3e-05  Score=60.01  Aligned_cols=50  Identities=14%  Similarity=0.231  Sum_probs=43.4

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeC
Q 048063           37 CTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDE   86 (484)
Q Consensus        37 ~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~   86 (484)
                      ...|+|.++||||++++++++|+++|+||.+....+.+|.+.-.+.+.-+
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~   54 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD   54 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC
Confidence            46899999999999999999999999999999987766887777777433

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.84  E-value=7.9e-05  Score=59.48  Aligned_cols=63  Identities=16%  Similarity=0.334  Sum_probs=47.3

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHH
Q 048063          132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYI  201 (484)
Q Consensus       132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L  201 (484)
                      -.+.|.|.+.||||+|++|+++|++.|+||.+..+.+.++.+...|.+...       +...++++.+.|
T Consensus         4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~L   66 (88)
T 2ko1_A            4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-------NTDKLTTLMDKL   66 (88)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-------SHHHHHHHHHHH
T ss_pred             EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-------CHHHHHHHHHHH
Confidence            357889999999999999999999999999999998866544455555443       234455554443

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.74  E-value=0.00013  Score=58.22  Aligned_cols=62  Identities=10%  Similarity=0.142  Sum_probs=48.2

Q ss_pred             ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063          370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI  436 (484)
Q Consensus       370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L  436 (484)
                      .+.|.|.+.||||+|++|+.+|+++|+||.++++.+.++.+...|.+.-.     +.+..+++.++|
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~L   66 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-----NTDKLTTLMDKL   66 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-----SHHHHHHHHHHH
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-----CHHHHHHHHHHH
Confidence            46789999999999999999999999999999998876655556655432     234556666666

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.72  E-value=0.025  Score=61.43  Aligned_cols=296  Identities=11%  Similarity=0.117  Sum_probs=168.0

Q ss_pred             eEEEEEE-ecCCCcHHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCcc
Q 048063           37 CTVVKVD-SVSKQGLLLEMVQVLTDMNLTISKSYIS-SDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSA  114 (484)
Q Consensus        37 ~t~I~V~-~~DrpGLfa~ia~vL~~~glnI~~A~It-t~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~  114 (484)
                      .+.|++. .++.||..+++-..|+++|+||.--..+ +.+|..--.|.|...+-     +...+.+++ +..... .+. 
T Consensus       270 ~~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~-----~~a~~~l~~-~~~el~-~~~-  341 (600)
T 3l76_A          270 QAKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLL-----NTAEAVTSA-IAPALR-SYP-  341 (600)
T ss_dssp             CEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGH-----HHHHHHHHH-HGGGGS-SST-
T ss_pred             EEEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHH-----HHHHHHHHH-HHHHhh-ccc-
Confidence            3455554 5799999999999999999999532221 24565555677753211     111122222 222110 000 


Q ss_pred             ccccccceeeecCCCCCCeEEEEEEec---CCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCCh
Q 048063          115 VAKTYTNKAVFGSEYPSEHTAIEMTGT---DRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDP  191 (484)
Q Consensus       115 ~~~~~~~v~v~~~~~~~~~t~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~  191 (484)
                      +......+. +    ..+...|.|.+.   .+||+.+++..+|+++|+||....  |..  .--.|.|...         
T Consensus       342 ~~~~~~~v~-~----~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tSe--~~Is~vI~~~---------  403 (600)
T 3l76_A          342 EADQEAEII-V----EKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TSE--VKVSCVIDQR---------  403 (600)
T ss_dssp             TCSSSSEEE-E----ECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--ECS--SEEEEEEEGG---------
T ss_pred             cccCcceeE-e----cCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cCC--CEEEEEEcHH---------
Confidence            000012333 2    236788999886   799999999999999999997765  322  2333444432         


Q ss_pred             hHHHHHHHHHHHHhcccccCCCCcccccccccccCCCCCCCCccchhhhhhhhhhhcccccCCCCCCCCCCCCCCCCCCC
Q 048063          192 GRLATIEEYITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGF  271 (484)
Q Consensus       192 ~~~~~l~~~L~~~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (484)
                       ..++..++|++.+.....                +++.++        .+   +                         
T Consensus       404 -d~~~Av~aLh~~f~~~~t----------------~~~~~~--------~~---~-------------------------  430 (600)
T 3l76_A          404 -DADRAIAALSNAFGVTLS----------------PPKNQT--------DT---S-------------------------  430 (600)
T ss_dssp             -GHHHHHHHHHHHTTCCBC----------------CCCCCC--------C------------------------------
T ss_pred             -HHHHHHHHHHHhhcccCC----------------Cccccc--------cc---c-------------------------
Confidence             335555666666643210                000000        00   0                         


Q ss_pred             CCCCCCcceEEEEeccCCCceeEEEE-EeCCCCchHHHHHHHHhhCCceEEEEEEEe----cCC--eEEEEEEEEccCCC
Q 048063          272 GDEEGMRRTAVYIESCEEKGYSIVSV-DCKDRPRLMFDTVCTLTDMQYVVFHASIGC----HGD--YAFQEYFIRHIDGY  344 (484)
Q Consensus       272 ~~~~~~~~p~V~v~n~~~~~~t~V~V-~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t----~~g--~a~d~f~V~~~~g~  344 (484)
                         ....-..|..+    .+...|.+ ..+|+||+.+++...|++.|+||---..+.    +.|  ..--+|.+..    
T Consensus       431 ---~~~~v~Gia~~----~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~----  499 (600)
T 3l76_A          431 ---HLPAVRGVALD----QDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE----  499 (600)
T ss_dssp             ----CCSCCEEEEE----CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH----
T ss_pred             ---ccCceEEEEee----CCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH----
Confidence               00111233332    34455555 459999999999999999999994322221    124  2333465533    


Q ss_pred             CCCChhHHHHHHHHHHHHHhhcc--------CCceEEEEEec---CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeE
Q 048063          345 ALNTEGEKERVIKCLEAAIERRV--------CEGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNA  413 (484)
Q Consensus       345 ~~~~~~~~e~l~~~L~~~l~rr~--------~~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~  413 (484)
                           ..++...+.|++ ++...        +....|.|.+.   .+||+.+.+-++|.+.||||....  |.  ...=.
T Consensus       500 -----~d~~~a~~~l~~-~~~~~~~~~v~~~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis--tS--Ei~Is  569 (600)
T 3l76_A          500 -----GDSSQAEAILQP-LIKDWLDAAIVVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA--TS--EIKIS  569 (600)
T ss_dssp             -----HHHHHHHHHHHH-HTTTSTTCEEEEECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE--EC--SSEEE
T ss_pred             -----HHHHHHHHHHHH-HHHhcCCceEEEeCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE--cC--CceEE
Confidence                 233344444443 22111        22578888874   899999999999999999998877  22  12334


Q ss_pred             EEEEcCCCCCCChHHHHHHHHHh
Q 048063          414 FYLRDISGNEVDMDFVESMKKEI  436 (484)
Q Consensus       414 F~v~~~~g~~l~~~~~~~l~~~L  436 (484)
                      +.|...+.    +..+..|.+++
T Consensus       570 ~vV~~~~~----~~Av~alh~~F  588 (600)
T 3l76_A          570 CVVPQDRG----VDALKAAHSAF  588 (600)
T ss_dssp             EEEEGGGH----HHHHHHHHHHT
T ss_pred             EEEeHHHH----HHHHHHHHHHh
Confidence            55643311    23567777777

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.46  E-value=0.0012  Score=59.73  Aligned_cols=130  Identities=13%  Similarity=0.126  Sum_probs=83.0

Q ss_pred             CceeEEEEE-eCCCCchHHHHHHHHhhCCceEEEEEE-EecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHH---Hh
Q 048063          290 KGYSIVSVD-CKDRPRLMFDTVCTLTDMQYVVFHASI-GCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAA---IE  364 (484)
Q Consensus       290 ~~~t~V~V~-~~DrpgLl~~i~~~L~~~~l~I~~A~i-~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~---l~  364 (484)
                      .+...|.|. .+|+||.++++...|++.|+||..-.. .+.+|...-+|+|...         ..++..+.|++.   +.
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~---------~~~~a~~~l~~~~~~l~   93 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRG---------DYKQTLEILSERQDSIG   93 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGG---------GHHHHHHHHHHSSTTTT
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEech---------HHHHHHHHHHHHHHHcC
Confidence            356778888 499999999999999999999987665 2334543445666431         122333333331   21


Q ss_pred             h----ccCCceEEEEEecC---CcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063          365 R----RVCEGVRLELCAAN---RVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI  436 (484)
Q Consensus       365 r----r~~~~t~leV~a~D---RpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L  436 (484)
                      -    -....+.+.|.+.+   +||+++.+.++|.++||||....  |.  ...-.|++...+.    ...++.|.+++
T Consensus        94 ~~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--ts--e~~is~vv~~~d~----~~av~~Lh~~f  164 (167)
T 2re1_A           94 AASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TS--EIKVSVLIDEKYM----ELATRVLHKAF  164 (167)
T ss_dssp             CSEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--EC--SSEEEEEEEGGGH----HHHHHHHHHHT
T ss_pred             CceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--cc--cCEEEEEEeHHHH----HHHHHHHHHHh
Confidence            1    01125889999987   99999999999999999999953  42  2233455533211    23456666665

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.42  E-value=0.0017  Score=58.65  Aligned_cols=109  Identities=16%  Similarity=0.156  Sum_probs=73.7

Q ss_pred             CeEEEEEE-ecCCCcHHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCc
Q 048063           36 DCTVVKVD-SVSKQGLLLEMVQVLTDMNLTISKSYIS-SDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSS  113 (484)
Q Consensus        36 ~~t~I~V~-~~DrpGLfa~ia~vL~~~glnI~~A~It-t~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~  113 (484)
                      +.+.|+|. .+|+||.++++..+|+++|+||.--..+ +.+|...-.|.|...      +.   +...+.|.....  .+
T Consensus        24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~------~~---~~a~~~l~~~~~--~l   92 (167)
T 2re1_A           24 NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRG------DY---KQTLEILSERQD--SI   92 (167)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGG------GH---HHHHHHHHHSST--TT
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEech------HH---HHHHHHHHHHHH--Hc
Confidence            56788888 5999999999999999999999865442 234644455777531      11   222233332210  11


Q ss_pred             cccccccceeeecCCCCCCeEEEEEEecC---CCchHHHHHHHHHhCCCeEEEE
Q 048063          114 AVAKTYTNKAVFGSEYPSEHTAIEMTGTD---RPGLFSEISAALADLHCNIVEA  164 (484)
Q Consensus       114 ~~~~~~~~v~v~~~~~~~~~t~i~V~~~D---rpGLL~~Ia~vL~~~glnI~~A  164 (484)
                      .    ...+. +    ..+...+.|.+.+   +||.++++..+|+++|+||...
T Consensus        93 ~----~~~i~-~----~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i  137 (167)
T 2re1_A           93 G----AASID-G----DDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI  137 (167)
T ss_dssp             T----CSEEE-E----ESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE
T ss_pred             C----CceEE-e----cCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE
Confidence            0    11233 2    2368899999987   9999999999999999999884

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.33  E-value=0.0034  Score=62.36  Aligned_cols=49  Identities=18%  Similarity=0.356  Sum_probs=41.9

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEe
Q 048063           36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSD--AGWFMDVFHVK   84 (484)
Q Consensus        36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~--~g~~~d~F~V~   84 (484)
                      ....++|.|+|||||.++++++|+++|+||.+++.+++  .|++.-...+.
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~   71 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIR   71 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEe
Confidence            34789999999999999999999999999999998764  78776555553

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.32  E-value=0.0068  Score=59.77  Aligned_cols=118  Identities=8%  Similarity=0.081  Sum_probs=72.1

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCcc
Q 048063           37 CTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS--DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSA  114 (484)
Q Consensus        37 ~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt--~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~  114 (484)
                      ...++|.|+|||||.++++++|+++|+||.+.+.++  ..|++.-...+.-+.+. ..    .+.|++.|....  ..+ 
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~-~~----~~~L~~~f~~la--~~~-   77 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKV-IP----LASLRTGFGVIA--AKF-   77 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCC-CC----HHHHHHHHHHHH--HHT-
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCC-CC----HHHHHHHHHHHH--HHc-
Confidence            468999999999999999999999999999999754  57777655555433221 22    244444443211  011 


Q ss_pred             ccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec
Q 048063          115 VAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH  169 (484)
Q Consensus       115 ~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~  169 (484)
                          ..++. +.....  ...|-|...-+---|.+|......-.+++.-+-+.+.
T Consensus        78 ----~m~~~-l~~~~~--~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Visn  125 (288)
T 3obi_A           78 ----TMGWH-MRDRET--RRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSN  125 (288)
T ss_dssp             ----TCEEE-EEETTS--CEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEES
T ss_pred             ----CCEEE-eeccCC--CcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEcC
Confidence                11222 222222  3334444444455777777777776676665555553

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.23  E-value=0.0084  Score=59.09  Aligned_cols=117  Identities=12%  Similarity=0.048  Sum_probs=69.9

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCc
Q 048063           36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS--DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSS  113 (484)
Q Consensus        36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt--~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~  113 (484)
                      ....+++.|+|||||.++++++|+++|+||.+++.++  ..|++.-...+.. ++..      .+.|++.|....  ..+
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~~~~------~~~L~~~f~~la--~~~   76 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEI-PVAG------VNDFNSAFGKVV--EKY   76 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC-CC---------CHHHHHHHHHH--GGG
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEc-CCCC------HHHHHHHHHHHH--HHc
Confidence            4578999999999999999999999999999999864  5777765444432 2211      224444443211  012


Q ss_pred             cccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec
Q 048063          114 AVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH  169 (484)
Q Consensus       114 ~~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~  169 (484)
                           ..++. +.....+....|-+++  +---|.+|......-.+++.-+-+.+.
T Consensus        77 -----~m~~~-l~~~~~~~ri~vl~Sg--~g~nl~~ll~~~~~g~l~~~i~~Visn  124 (287)
T 3nrb_A           77 -----NAEWW-FRPRTDRKKVVIMVSK--FDHCLGDLLYRHRLGELDMEVVGIISN  124 (287)
T ss_dssp             -----TCEEE-EEETTCCCEEEEEECS--CCHHHHHHHHHHHHTSSCCEEEEEEES
T ss_pred             -----CCeeE-eeccCCCcEEEEEEeC--CCcCHHHHHHHHHCCCCCeEEEEEEeC
Confidence                 12233 3322223333444444  345677777777766666655555553

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.22  E-value=0.0076  Score=59.36  Aligned_cols=48  Identities=13%  Similarity=0.136  Sum_probs=40.9

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEe
Q 048063           37 CTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS--DAGWFMDVFHVK   84 (484)
Q Consensus        37 ~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt--~~g~~~d~F~V~   84 (484)
                      ...++|.|+|||||.++++++|+++|+||.+.+.++  ..|++.-...+.
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~   57 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFR   57 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEE
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEe
Confidence            478999999999999999999999999999999875  567776554443

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.16  E-value=0.008  Score=59.38  Aligned_cols=48  Identities=13%  Similarity=0.090  Sum_probs=40.9

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEE
Q 048063           36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS--DAGWFMDVFHV   83 (484)
Q Consensus        36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt--~~g~~~d~F~V   83 (484)
                      ....+++.|+|||||.++++++|+++|+||.+++.++  ..|++.-...+
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~   58 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVF   58 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEE
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEE
Confidence            3578999999999999999999999999999999875  56777644444

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.08  E-value=0.026  Score=51.36  Aligned_cols=139  Identities=15%  Similarity=0.203  Sum_probs=86.6

Q ss_pred             CCeEEEEE-EecCCCcHHHHHHHHHHhCCceEEEEEEEec---CCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCC
Q 048063           35 EDCTVVKV-DSVSKQGLLLEMVQVLTDMNLTISKSYISSD---AGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEI  110 (484)
Q Consensus        35 ~~~t~I~V-~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~---~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~  110 (484)
                      .+.+.|+| ..+|+||.++++...|++.|+||.--..++.   +|..--.|.|..         +..+...+.|..... 
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~---------~d~~~a~~~l~~~~~-   82 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR---------SDGRRAMEILKKLQV-   82 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH---------HHHHHHHHHHHTTTT-
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc---------ccHHHHHHHHHHHHH-
Confidence            35678888 4799999999999999999999985544332   332222366642         122333444443211 


Q ss_pred             CCccccccccceeeecCCCCCCeEEEEEEec---CCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCC
Q 048063          111 PSSAVAKTYTNKAVFGSEYPSEHTAIEMTGT---DRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTP  187 (484)
Q Consensus       111 ~~~~~~~~~~~v~v~~~~~~~~~t~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~  187 (484)
                       ...    ...+. +    ..+...|.|.+.   ++||+++++..+|++.|+||....  |..  .--.|.|..      
T Consensus        83 -~~~----~~~v~-~----~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe--~~Is~vV~~------  142 (178)
T 2dtj_A           83 -QGN----WTNVL-Y----DDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSE--IRISVLIRE------  142 (178)
T ss_dssp             -TTT----CSEEE-E----ESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EET--TEEEEEEEG------
T ss_pred             -hcC----CCeEE-E----eCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCC--CeEEEEEeH------
Confidence             110    12233 2    235788888886   899999999999999999998843  432  122344422      


Q ss_pred             CCChhHHHHHHHHHHHHhcc
Q 048063          188 IDDPGRLATIEEYITTVLRA  207 (484)
Q Consensus       188 i~d~~~~~~l~~~L~~~L~g  207 (484)
                          +..++..+.|.+.+.-
T Consensus       143 ----~d~~~Av~~Lh~~F~l  158 (178)
T 2dtj_A          143 ----DDLDAAARALHEQFQL  158 (178)
T ss_dssp             ----GGHHHHHHHHHHHHTC
T ss_pred             ----HHHHHHHHHHHHHHcc
Confidence                2345555667776643

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=96.94  E-value=0.0027  Score=62.62  Aligned_cols=65  Identities=22%  Similarity=0.291  Sum_probs=45.7

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHH
Q 048063          132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS--HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTV  204 (484)
Q Consensus       132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T--~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~  204 (484)
                      ..++|+|.|+|||||.++|+++|+++|+||.+..-++  ..+.+.-...+..+  +  .    .++.|+++|...
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~--~--~----~~~~L~~~f~~l   72 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIP--V--A----GVNDFNSAFGKV   72 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC--C---------CHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcC--C--C----CHHHHHHHHHHH
Confidence            4679999999999999999999999999999999875  33443332222211  1  1    234777777653

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=96.93  E-value=0.016  Score=57.53  Aligned_cols=40  Identities=15%  Similarity=0.143  Sum_probs=35.6

Q ss_pred             eeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEec--CCe
Q 048063          292 YSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCH--GDY  331 (484)
Q Consensus       292 ~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~--~g~  331 (484)
                      ..+++|.|+||||+++.++..|+++||||.+++.++.  .|+
T Consensus        22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~   63 (302)
T 3o1l_A           22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGW   63 (302)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCe
Confidence            3579999999999999999999999999999999654  454

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=96.88  E-value=0.022  Score=56.04  Aligned_cols=103  Identities=14%  Similarity=0.126  Sum_probs=63.9

Q ss_pred             eeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEe--cCCeEEEEEEEEccCCCCCCChhHHHHHHHHHH---HHHh--
Q 048063          292 YSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGC--HGDYAFQEYFIRHIDGYALNTEGEKERVIKCLE---AAIE--  364 (484)
Q Consensus       292 ~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t--~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~---~~l~--  364 (484)
                      ..+++|.|+||||+++.++..|+++||||.+.+..+  ..|+..-...+.-+++ .+    .+++|++.|+   +.+.  
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~~----~~~~L~~~f~~la~~~~m~   80 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-VI----PLASLRTGFGVIAAKFTMG   80 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-CC----CHHHHHHHHHHHHHHTTCE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-CC----CHHHHHHHHHHHHHHcCCE
Confidence            368999999999999999999999999999999953  3454321111211221 11    2455555544   3331  


Q ss_pred             ---hccCCceEEEEEecCCcchHHHHHHHHHhCCceEE
Q 048063          365 ---RRVCEGVRLELCAANRVGLLSDITRVLRENGLAVV  399 (484)
Q Consensus       365 ---rr~~~~t~leV~a~DRpGLL~~It~~f~~~gi~I~  399 (484)
                         +...+...|=|-+-.+---|.+|-....+-.++.+
T Consensus        81 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~  118 (288)
T 3obi_A           81 WHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMI  118 (288)
T ss_dssp             EEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEE
T ss_pred             EEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeE
Confidence               11222444555555555677788888777666543

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=96.85  E-value=0.0052  Score=55.42  Aligned_cols=133  Identities=8%  Similarity=0.041  Sum_probs=84.2

Q ss_pred             CceeEEEEEe-CCCCchHHHHHHHHhhCCceEEEEEEEec---CCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh
Q 048063          290 KGYSIVSVDC-KDRPRLMFDTVCTLTDMQYVVFHASIGCH---GDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER  365 (484)
Q Consensus       290 ~~~t~V~V~~-~DrpgLl~~i~~~L~~~~l~I~~A~i~t~---~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r  365 (484)
                      ++.+.|.|.+ +|+||.++++..+|++.|+||.--.....   .|..--+|.|...+.      .+..++.+.+...+.-
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~------~~a~~~L~~~~~~~~~   87 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFA------QEALEALEPVLAEIGG   87 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGH------HHHHHHHHHHHHHHCC
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHH------HHHHHHHHHHHHHhCC
Confidence            3556777766 89999999999999999999987544222   234444566654222      1222222233333321


Q ss_pred             c---cCCceEEEEEecC---CcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063          366 R---VCEGVRLELCAAN---RVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI  436 (484)
Q Consensus       366 r---~~~~t~leV~a~D---RpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L  436 (484)
                      .   .+....+.|.+.+   +||+++.+.++|.+.||||....  |. +. .-.|.|...+.    ++.++.|.+++
T Consensus        88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~S-e~-~is~vv~~~d~----~~Av~~Lh~~f  156 (167)
T 2dt9_A           88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TS-EV-RISVIIPAEYA----EAALRAVHQAF  156 (167)
T ss_dssp             EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--EC-SS-EEEEEEEGGGH----HHHHHHHHHHT
T ss_pred             cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--cc-CC-EEEEEEeHHHH----HHHHHHHHHHH
Confidence            1   1225778899986   99999999999999999996654  22 22 44566643211    23556676666

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=96.84  E-value=0.018  Score=56.76  Aligned_cols=36  Identities=11%  Similarity=0.080  Sum_probs=33.8

Q ss_pred             eeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEe
Q 048063          292 YSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGC  327 (484)
Q Consensus       292 ~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t  327 (484)
                      ..+++|.|+||||+++++++.|+++|+||.+++.++
T Consensus        10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~   45 (292)
T 3lou_A           10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFD   45 (292)
T ss_dssp             EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEe
Confidence            468999999999999999999999999999999974

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.83  E-value=0.0042  Score=56.18  Aligned_cols=65  Identities=12%  Similarity=0.122  Sum_probs=50.2

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC--CeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN--DRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~--~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      ...|.|...|+||+|++|+++|++.|+||.+..+.+..  +...-+|.+. .       +...++.|.+.|.+..
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~-------d~~~leqI~kqL~Kl~   69 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G-------DEKVLEQIEKQLHKLV   69 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S-------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-c-------cHHHHHHHHHHHcCCC
Confidence            36789999999999999999999999999999987533  3344555554 3       2567788888877643

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=96.82  E-value=0.018  Score=56.76  Aligned_cols=36  Identities=14%  Similarity=-0.035  Sum_probs=33.8

Q ss_pred             eeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEe
Q 048063          292 YSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGC  327 (484)
Q Consensus       292 ~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t  327 (484)
                      ..+++|.|+||||+++++++.|+++|+||.+.+.++
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~   43 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFD   43 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeec
Confidence            468999999999999999999999999999999974

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=96.78  E-value=0.011  Score=54.03  Aligned_cols=130  Identities=12%  Similarity=0.097  Sum_probs=84.0

Q ss_pred             CceeEEEE-EeCCCCchHHHHHHHHhhCCceEEEEEEEec---CCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHH---
Q 048063          290 KGYSIVSV-DCKDRPRLMFDTVCTLTDMQYVVFHASIGCH---GDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAA---  362 (484)
Q Consensus       290 ~~~t~V~V-~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~---~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~---  362 (484)
                      ++.+.|.| ..+|+||.++++...|++.|+||..-..++.   ++...-+|.+...         ..++..+.|++.   
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~---------d~~~a~~~l~~~~~~   83 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS---------DGRRAMEILKKLQVQ   83 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH---------HHHHHHHHHHTTTTT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc---------cHHHHHHHHHHHHHh
Confidence            35567777 4699999999999999999999987655433   3333234666431         223333334331   


Q ss_pred             Hhh----ccCCceEEEEEec---CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHH
Q 048063          363 IER----RVCEGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKE  435 (484)
Q Consensus       363 l~r----r~~~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~  435 (484)
                      +.-    -.+....|.|.+.   ++||+++.+.++|.+.||||....  |..  ..-.|.|...+.    +..++.|.++
T Consensus        84 ~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe--~~Is~vV~~~d~----~~Av~~Lh~~  155 (178)
T 2dtj_A           84 GNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSE--IRISVLIREDDL----DAAARALHEQ  155 (178)
T ss_dssp             TTCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EET--TEEEEEEEGGGH----HHHHHHHHHH
T ss_pred             cCCCeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCC--CeEEEEEeHHHH----HHHHHHHHHH
Confidence            110    0122577888887   899999999999999999999853  321  334566633211    2355677777


Q ss_pred             h
Q 048063          436 I  436 (484)
Q Consensus       436 L  436 (484)
                      +
T Consensus       156 F  156 (178)
T 2dtj_A          156 F  156 (178)
T ss_dssp             H
T ss_pred             H
Confidence            7

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.64  E-value=0.0068  Score=54.84  Aligned_cols=65  Identities=9%  Similarity=0.120  Sum_probs=50.0

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cC-CeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HN-DRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~-~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      ...|.|...|+||+|++|+++|++.|+||.+..+.+ .+ +...-+|.|...        ...++.|.++|.+..
T Consensus         4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d--------~~~leql~kQL~Kl~   70 (165)
T 2pc6_A            4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP--------DEIVEQITKQLNKLI   70 (165)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC--------HHHHHHHHHHHHHST
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc--------HHHHHHHHHHhcCCC
Confidence            367899999999999999999999999999999875 43 334455555422        467788888877643

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=96.60  E-value=0.0093  Score=53.73  Aligned_cols=109  Identities=14%  Similarity=0.233  Sum_probs=72.8

Q ss_pred             CCeEEEEEEe-cCCCcHHHHHHHHHHhCCceEEEEEEEe---cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCC
Q 048063           35 EDCTVVKVDS-VSKQGLLLEMVQVLTDMNLTISKSYISS---DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEI  110 (484)
Q Consensus        35 ~~~t~I~V~~-~DrpGLfa~ia~vL~~~glnI~~A~Itt---~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~  110 (484)
                      .+.+.|+|.+ +|+||..+++..+|++.|+||.--..+.   +.|..--.|.|...+.     ++..+.|++...+.   
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~-----~~a~~~L~~~~~~~---   85 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFA-----QEALEALEPVLAEI---   85 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGH-----HHHHHHHHHHHHHH---
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHH-----HHHHHHHHHHHHHh---
Confidence            3567788775 8999999999999999999998543321   1344445577753211     12223333321111   


Q ss_pred             CCccccccccceeeecCCCCCCeEEEEEEecC---CCchHHHHHHHHHhCCCeEEEE
Q 048063          111 PSSAVAKTYTNKAVFGSEYPSEHTAIEMTGTD---RPGLFSEISAALADLHCNIVEA  164 (484)
Q Consensus       111 ~~~~~~~~~~~v~v~~~~~~~~~t~i~V~~~D---rpGLL~~Ia~vL~~~glnI~~A  164 (484)
                       .+       .+. +    ..+...+.|.+.+   +||.++++..+|++.|+||...
T Consensus        86 -~~-------~v~-~----~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  129 (167)
T 2dt9_A           86 -GG-------EAI-L----RPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI  129 (167)
T ss_dssp             -CC-------EEE-E----ECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE
T ss_pred             -CC-------cEE-E----eCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence             01       233 2    2367889999876   9999999999999999999544

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.51  E-value=0.0056  Score=55.37  Aligned_cols=70  Identities=20%  Similarity=0.207  Sum_probs=48.7

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC--CeeeeEEEEEcCCCCCCChHHHHHHHHHhCC--CceEEeec
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKG--EKSVNAFYLRDISGNEVDMDFVESMKKEILG--PIDLAVKN  446 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g--~~a~d~F~v~~~~g~~l~~~~~~~l~~~L~~--~~~~~~~~  446 (484)
                      +.|+|.+.||||+|++|+.+|+++|+||.++.+.+..  +.+.-+|.+.   |.   ++..+++..+| -  ..|..++.
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~---~d---~~~leqI~kqL-~Kl~dV~~V~r   76 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---GD---EKVLEQIEKQL-HKLVDVLRVSE   76 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---SC---HHHHHHHHHHH-HHSTTEEEEEE
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe---cc---HHHHHHHHHHH-cCCCCEEEEEE
Confidence            5799999999999999999999999999999987543  2344455553   22   33444444444 1  14666644


Q ss_pred             C
Q 048063          447 D  447 (484)
Q Consensus       447 ~  447 (484)
                      -
T Consensus        77 ~   77 (164)
T 2f1f_A           77 L   77 (164)
T ss_dssp             G
T ss_pred             c
Confidence            3

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.21  E-value=0.066  Score=48.93  Aligned_cols=137  Identities=13%  Similarity=0.178  Sum_probs=84.3

Q ss_pred             CeEEEEE-EecCCCcHHHHHHHHHHhCCceEEEEEEE-ec--CCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCC
Q 048063           36 DCTVVKV-DSVSKQGLLLEMVQVLTDMNLTISKSYIS-SD--AGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIP  111 (484)
Q Consensus        36 ~~t~I~V-~~~DrpGLfa~ia~vL~~~glnI~~A~It-t~--~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~  111 (484)
                      +.+.|+| ..+|+||.++++..+|++.|+||.--..+ +.  +|..--.|.|...+.     +...+.|++ +....   
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~-----~~a~~~L~~-~~~el---   85 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVG-----PAAVEKLDS-LRNEI---   85 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTH-----HHHHHHHHH-THHHH---
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHH-----HHHHHHHHH-HHHhc---
Confidence            4556665 47899999999999999999999743332 22  565555677753211     112122222 11100   


Q ss_pred             CccccccccceeeecCCCCCCeEEEEEEec---CCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCC
Q 048063          112 SSAVAKTYTNKAVFGSEYPSEHTAIEMTGT---DRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPI  188 (484)
Q Consensus       112 ~~~~~~~~~~v~v~~~~~~~~~t~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i  188 (484)
                      .+      ..+. ++    .+...|.|.+.   ++||+.+++..+|++.|+||....  |..-  --.|.|...      
T Consensus        86 ~~------~~v~-~~----~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is--tSei--~Is~vV~~~------  144 (181)
T 3s1t_A           86 GF------SQLL-YD----DHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEI--RISVLCRDT------  144 (181)
T ss_dssp             CC------SEEE-EE----SCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETT--EEEEEEEGG------
T ss_pred             Cc------ceEE-Ee----CCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE--cCCC--EEEEEEeHH------
Confidence            01      1233 32    35778888875   899999999999999999998876  3321  223434332      


Q ss_pred             CChhHHHHHHHHHHHHhc
Q 048063          189 DDPGRLATIEEYITTVLR  206 (484)
Q Consensus       189 ~d~~~~~~l~~~L~~~L~  206 (484)
                          ..++..++|.+++.
T Consensus       145 ----d~~~Av~aLH~~f~  158 (181)
T 3s1t_A          145 ----ELDKAVVALHEAFG  158 (181)
T ss_dssp             ----GHHHHHHHHHHHHT
T ss_pred             ----HHHHHHHHHHHHHc
Confidence                33555567777764

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.15  E-value=0.013  Score=52.87  Aligned_cols=70  Identities=19%  Similarity=0.218  Sum_probs=48.6

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC--CeeeeEEEEEcCCCCCCChHHHHHHHHHhCC--CceEEeec
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKG--EKSVNAFYLRDISGNEVDMDFVESMKKEILG--PIDLAVKN  446 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g--~~a~d~F~v~~~~g~~l~~~~~~~l~~~L~~--~~~~~~~~  446 (484)
                      +.++|.+.|+||+|++|+.+|+++|+||.++.+.+..  +...-+|.+.   |.   +...+++..+| -  ..|..++.
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~---~d---~~~leql~kQL-~Kl~dV~~V~~   77 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN---GP---DEIVEQITKQL-NKLIEVVKLID   77 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE---EC---HHHHHHHHHHH-HHSTTEEEEEE
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe---cc---HHHHHHHHHHh-cCCCCEEEEEE
Confidence            5799999999999999999999999999999987443  2344455553   22   33445555444 1  14666654


Q ss_pred             C
Q 048063          447 D  447 (484)
Q Consensus       447 ~  447 (484)
                      -
T Consensus        78 ~   78 (165)
T 2pc6_A           78 L   78 (165)
T ss_dssp             G
T ss_pred             c
Confidence            3

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.09  E-value=0.02  Score=51.11  Aligned_cols=59  Identities=17%  Similarity=0.105  Sum_probs=45.1

Q ss_pred             EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063          135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT  203 (484)
Q Consensus       135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~  203 (484)
                      .|+|.+.||+|||++|+.+|+.+++||..+.+.+.+ .    +++.-+     ..+...+..|...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g-~----i~~~~~-----~~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG-R----IYLNFA-----ELEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTT-E----EEEEEC-----CCCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCC-E----EEEEEE-----eCCHHHHHHHHHHHHc
Confidence            588999999999999999999999999999997663 1    444433     1234566777766655

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.06  E-value=0.019  Score=51.27  Aligned_cols=36  Identities=25%  Similarity=0.480  Sum_probs=33.4

Q ss_pred             EEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC
Q 048063          372 RLELCAANRVGLLSDITRVLRENGLAVVRAHVATKG  407 (484)
Q Consensus       372 ~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g  407 (484)
                      .|+|.|.||+|||++|+++|.++++||..+.+.+.|
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g   37 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG   37 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCC
Confidence            489999999999999999999999999999997663

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.02  E-value=0.02  Score=52.94  Aligned_cols=65  Identities=18%  Similarity=0.260  Sum_probs=48.9

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEE-ecCCeeE-EEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAW-SHNDRLA-CVAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~-T~~~~~~-dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      ...|.|...|+||.|++|+++|+..|+||.+..+. |.+.... -++.|...        +..++.|.++|.+..
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--------e~~ieqL~kQL~KLi   95 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--------DKTIEQIEKQAYKLV   95 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--------TTHHHHHHHHHTTST
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--------HHHHHHHHHHhcCcC
Confidence            47899999999999999999999999999998887 4553444 44555432        245677777776644

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=95.76  E-value=0.63  Score=50.34  Aligned_cols=139  Identities=15%  Similarity=0.201  Sum_probs=84.7

Q ss_pred             ceeEEEEEeC---CCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhhc-
Q 048063          291 GYSIVSVDCK---DRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERR-  366 (484)
Q Consensus       291 ~~t~V~V~~~---DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~rr-  366 (484)
                      +...|.|.|.   .+||+.+++..+|.+.++||.--.  +. ... -+|.|..         ...+...+.|-+.+... 
T Consensus       354 ~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS-e~~-Is~vI~~---------~d~~~Av~aLh~~f~~~~  420 (600)
T 3l76_A          354 GIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS-EVK-VSCVIDQ---------RDADRAIAALSNAFGVTL  420 (600)
T ss_dssp             SEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC-SSE-EEEEEEG---------GGHHHHHHHHHHHTTCCB
T ss_pred             CeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC-CCE-EEEEEcH---------HHHHHHHHHHHHhhcccC
Confidence            5567888874   799999999999999999996543  22 221 1244433         24455556666665211 


Q ss_pred             cC--------------------CceEEEEE-ecCCcchHHHHHHHHHhCCceEEEEEeeecC----C--eeeeEEEEEcC
Q 048063          367 VC--------------------EGVRLELC-AANRVGLLSDITRVLRENGLAVVRAHVATKG----E--KSVNAFYLRDI  419 (484)
Q Consensus       367 ~~--------------------~~t~leV~-a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g----~--~a~d~F~v~~~  419 (484)
                      .|                    .-..|.|. ..|+||+.++|-..|+++||++....-+...    +  ...=.|.+...
T Consensus       421 t~~~~~~~~~~~~~v~Gia~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~  500 (600)
T 3l76_A          421 SPPKNQTDTSHLPAVRGVALDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEG  500 (600)
T ss_dssp             CCCCCCCC---CCSCCEEEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHH
T ss_pred             CCccccccccccCceEEEEeeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHH
Confidence            11                    02456554 4799999999999999999999766554321    1  23446777543


Q ss_pred             CCCCCChHHHHHHHHHhCCCceEEe
Q 048063          420 SGNEVDMDFVESMKKEILGPIDLAV  444 (484)
Q Consensus       420 ~g~~l~~~~~~~l~~~L~~~~~~~~  444 (484)
                      +... ..+.++.++.++ |...+.+
T Consensus       501 d~~~-a~~~l~~~~~~~-~~~~v~~  523 (600)
T 3l76_A          501 DSSQ-AEAILQPLIKDW-LDAAIVV  523 (600)
T ss_dssp             HHHH-HHHHHHHHTTTS-TTCEEEE
T ss_pred             HHHH-HHHHHHHHHHhc-CCceEEE
Confidence            2221 112344555556 5333333

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=95.73  E-value=0.072  Score=48.69  Aligned_cols=132  Identities=12%  Similarity=0.049  Sum_probs=84.1

Q ss_pred             ceeEEEE-EeCCCCchHHHHHHHHhhCCceEEEEEEE-ec--CCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHh--
Q 048063          291 GYSIVSV-DCKDRPRLMFDTVCTLTDMQYVVFHASIG-CH--GDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIE--  364 (484)
Q Consensus       291 ~~t~V~V-~~~DrpgLl~~i~~~L~~~~l~I~~A~i~-t~--~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~--  364 (484)
                      +.+.|.| ..+|+||.++++...|++.|+||.--... ..  .|..--+|+|...+..      +..++.+.+...+.  
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~------~a~~~L~~~~~el~~~   88 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGP------AAVEKLDSLRNEIGFS   88 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHH------HHHHHHHHTHHHHCCS
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHH------HHHHHHHHHHHhcCcc
Confidence            3444544 36899999999999999999999754442 22  4555556777542221      22232233333331  


Q ss_pred             --hccCCceEEEEEec---CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063          365 --RRVCEGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI  436 (484)
Q Consensus       365 --rr~~~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L  436 (484)
                        .-.+....|.|.+.   ++||+++.+.++|.+.||||....  |.  ...=.|.|...+.    +..++.|.+++
T Consensus        89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is--tS--ei~Is~vV~~~d~----~~Av~aLH~~f  157 (181)
T 3s1t_A           89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TS--EIRISVLCRDTEL----DKAVVALHEAF  157 (181)
T ss_dssp             EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EE--TTEEEEEEEGGGH----HHHHHHHHHHH
T ss_pred             eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE--cC--CCEEEEEEeHHHH----HHHHHHHHHHH
Confidence              01123578888886   899999999999999999999877  22  2333466644311    23567777777

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=95.60  E-value=0.22  Score=45.94  Aligned_cols=110  Identities=17%  Similarity=0.180  Sum_probs=73.2

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEE-Eec-CCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCcc
Q 048063           37 CTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYI-SSD-AGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSA  114 (484)
Q Consensus        37 ~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~I-tt~-~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~  114 (484)
                      ...|+|...|+||.|++++++|+..|+||.+-.+ .|. .|..--++.|...       +..++.|.+.|.....  .. 
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~-------e~~ieqL~kQL~KLid--Vi-   98 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD-------DKTIEQIEKQAYKLVE--VV-   98 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC-------TTHHHHHHHHHTTSTT--EE-
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC-------HHHHHHHHHHhcCcCc--eE-
Confidence            4689999999999999999999999999998776 454 4666555666532       3467788877765321  00 


Q ss_pred             ccccccceeeecC----CCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEE
Q 048063          115 VAKTYTNKAVFGS----EYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAH  165 (484)
Q Consensus       115 ~~~~~~~v~v~~~----~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~  165 (484)
                            +|..+.+    .-...-..|.|.+...   -.+|.++...++.+|.+..
T Consensus        99 ------kV~dl~~~~~~~v~REl~LiKV~~~~~---r~ei~~i~~~fra~ivDv~  144 (193)
T 2fgc_A           99 ------KVTPIDPLPENRVEREMALIKVRFDED---KQEIFQLVEIFRGKIIDVS  144 (193)
T ss_dssp             ------EEEECCSSGGGEEEEEEEEEEEECSSC---HHHHHHHHHHTTCEEEEEC
T ss_pred             ------EEEEecCCCCccceeEEEEEEEeCCcC---HHHHHHHHHHcCCEEEEEc
Confidence                  1110111    0112455677766443   7788888888888887763

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.46  E-value=0.45  Score=49.09  Aligned_cols=137  Identities=17%  Similarity=0.243  Sum_probs=86.2

Q ss_pred             CeEEEEEE-ecCCCcHHHHHHHHHHhCCceEEEEEEEec---CCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCC
Q 048063           36 DCTVVKVD-SVSKQGLLLEMVQVLTDMNLTISKSYISSD---AGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIP  111 (484)
Q Consensus        36 ~~t~I~V~-~~DrpGLfa~ia~vL~~~glnI~~A~Itt~---~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~  111 (484)
                      +.+.|+|. .+|+||.++++...|+++|+||.--..++.   +|...-.|.|...  .   .++..+.|++ +..+.   
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~--~---~~~a~~~l~~-~~~~~---  333 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS--D---GRRAMEILKK-LQVQG---  333 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT--T---HHHHHHHHHH-HHTTT---
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech--h---HHHHHHHHHH-HHHHc---
Confidence            45677777 699999999999999999999986544332   4544555777531  1   1222333333 22221   


Q ss_pred             CccccccccceeeecCCCCCCeEEEEEEec---CCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCC
Q 048063          112 SSAVAKTYTNKAVFGSEYPSEHTAIEMTGT---DRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPI  188 (484)
Q Consensus       112 ~~~~~~~~~~v~v~~~~~~~~~t~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i  188 (484)
                      .+      ..+. +    ..+...+.|.+.   ++||.++++..+|++.|+||...  .|..-.  -.|.|..       
T Consensus       334 ~~------~~v~-~----~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i--s~Se~~--is~vV~~-------  391 (421)
T 3ab4_A          334 NW------TNVL-Y----DDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI--STSEIR--ISVLIRE-------  391 (421)
T ss_dssp             TC------SEEE-E----ECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEE--EEETTE--EEEEEEG-------
T ss_pred             CC------ceEE-E----eCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEE--EcCCCe--EEEEEeH-------
Confidence            11      1233 3    235788888885   89999999999999999999843  233222  2233332       


Q ss_pred             CChhHHHHHHHHHHHHhc
Q 048063          189 DDPGRLATIEEYITTVLR  206 (484)
Q Consensus       189 ~d~~~~~~l~~~L~~~L~  206 (484)
                         +..++..+.|++.+-
T Consensus       392 ---~d~~~Av~~Lh~~f~  406 (421)
T 3ab4_A          392 ---DDLDAAARALHEQFQ  406 (421)
T ss_dssp             ---GGHHHHHHHHHHHTT
T ss_pred             ---HHHHHHHHHHHHHHh
Confidence               234555667777664

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.35  E-value=0.023  Score=53.38  Aligned_cols=69  Identities=22%  Similarity=0.263  Sum_probs=44.7

Q ss_pred             ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC--C---eeeeEEEEEcCCCCCCChHHHHHHHHHhCCCceEEe
Q 048063          370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKG--E---KSVNAFYLRDISGNEVDMDFVESMKKEILGPIDLAV  444 (484)
Q Consensus       370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g--~---~a~d~F~v~~~~g~~l~~~~~~~l~~~L~~~~~~~~  444 (484)
                      ...|+|.+.||||+|++|+.+|+++++||...+..+..  +   .|.-.+-+.+.    .-++..++|++ +  .-+..+
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~----~Le~LL~kLrk-I--~gV~~V   76 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG----DFEKILERVKT-F--DYIIEI   76 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS----CHHHHHHHHHT-C--TTEEEE
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC----CHHHHHHHHhC-C--CCeeEE
Confidence            35799999999999999999999999999999998853  2   34444555332    11345566644 4  335555


Q ss_pred             e
Q 048063          445 K  445 (484)
Q Consensus       445 ~  445 (484)
                      +
T Consensus        77 ~   77 (223)
T 1y7p_A           77 E   77 (223)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.34  E-value=0.029  Score=52.62  Aligned_cols=38  Identities=13%  Similarity=0.292  Sum_probs=31.4

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC
Q 048063          133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN  170 (484)
Q Consensus       133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~  170 (484)
                      ...|.|.+.||||+|++|+.+|+++++||...+..+..
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~   41 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK   41 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence            56899999999999999999999999999999999854

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.01  E-value=0.092  Score=48.84  Aligned_cols=133  Identities=12%  Similarity=0.048  Sum_probs=84.4

Q ss_pred             CceeEEEEE-eCCCCchHHHHHHHHhhCCceEEEEEEEe---cCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh
Q 048063          290 KGYSIVSVD-CKDRPRLMFDTVCTLTDMQYVVFHASIGC---HGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER  365 (484)
Q Consensus       290 ~~~t~V~V~-~~DrpgLl~~i~~~L~~~~l~I~~A~i~t---~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r  365 (484)
                      ++.+.|.|. .+|+||+.+++..+|++.|+||----.+.   ..+....+|.+...+.      .+..++...+...+.-
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~------~~~~~~l~~~~~~~~~  106 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVG------PAAVEKLDSLRNEIGF  106 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGH------HHHHHHHHTTHHHHCC
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhH------HHHHHHHHHHHhhhce
Confidence            355667665 59999999999999999999997643322   1345555676644222      1233333333333311


Q ss_pred             ----ccCCceEEEEEec---CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063          366 ----RVCEGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI  436 (484)
Q Consensus       366 ----r~~~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L  436 (484)
                          -.+....|.|.+.   .+||+.+.+-++|++.||||....  |-  ...=.|.|...+.    +..+..|.++.
T Consensus       107 ~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs--tS--Ei~IS~vV~~~d~----~~Av~aLH~~F  176 (200)
T 4go7_X          107 SQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TS--EIRISVLCRDTEL----DKAVVALHEAF  176 (200)
T ss_dssp             SEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE--EC--SSEEEEEEEGGGH----HHHHHHHHHHH
T ss_pred             eeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE--cc--CCEEEEEEeHHHH----HHHHHHHHHHh
Confidence                1122567778775   699999999999999999999886  21  1233466643321    23566777776

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=94.92  E-value=0.09  Score=48.91  Aligned_cols=111  Identities=14%  Similarity=0.187  Sum_probs=71.3

Q ss_pred             CCeEEEEEE-ecCCCcHHHHHHHHHHhCCceEEEEEEEe---cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCC
Q 048063           35 EDCTVVKVD-SVSKQGLLLEMVQVLTDMNLTISKSYISS---DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEI  110 (484)
Q Consensus        35 ~~~t~I~V~-~~DrpGLfa~ia~vL~~~glnI~~A~Itt---~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~  110 (484)
                      .+.+.|+|. .+|+||..+++.+.|++.|+||----.+.   .++.....|.+...         ..+...+.|..... 
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~---------d~~~~~~~l~~~~~-  102 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD---------VGPAAVEKLDSLRN-  102 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG---------GHHHHHHHHHTTHH-
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh---------hHHHHHHHHHHHHh-
Confidence            356778876 69999999999999999999997543221   34555556777532         11222222222100 


Q ss_pred             CCccccccccceeeecCCCCCCeEEEEEEe---cCCCchHHHHHHHHHhCCCeEEEEE
Q 048063          111 PSSAVAKTYTNKAVFGSEYPSEHTAIEMTG---TDRPGLFSEISAALADLHCNIVEAH  165 (484)
Q Consensus       111 ~~~~~~~~~~~v~v~~~~~~~~~t~i~V~~---~DrpGLL~~Ia~vL~~~glnI~~A~  165 (484)
                       ..    ....+. ++    .+...|.|.+   +.+||+.+++..+|++.|+||..-.
T Consensus       103 -~~----~~~~v~-~~----~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs  150 (200)
T 4go7_X          103 -EI----GFSQLL-YD----DHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  150 (200)
T ss_dssp             -HH----CCSEEE-EE----CCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             -hh----ceeeEE-Ee----cCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE
Confidence             00    011233 22    2456666665   6899999999999999999998775

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=94.74  E-value=0.17  Score=52.34  Aligned_cols=133  Identities=13%  Similarity=0.090  Sum_probs=84.8

Q ss_pred             CceeEEEEE-eCCCCchHHHHHHHHhhCCceEEEEEEEec---CCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh
Q 048063          290 KGYSIVSVD-CKDRPRLMFDTVCTLTDMQYVVFHASIGCH---GDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER  365 (484)
Q Consensus       290 ~~~t~V~V~-~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~---~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r  365 (484)
                      .+.+.|.|. .+|+||.++++...|++.|+||..-...+.   .|...-+|+|-..+      ..+..++.+.+...+.-
T Consensus       262 ~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~------~~~a~~~l~~~~~~~~~  335 (421)
T 3ab4_A          262 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSD------GRRAMEILKKLQVQGNW  335 (421)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTT------HHHHHHHHHHHHTTTTC
T ss_pred             CCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechh------HHHHHHHHHHHHHHcCC
Confidence            356677887 699999999999999999999987655343   34444456664311      11222222222222221


Q ss_pred             ----ccCCceEEEEEec---CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063          366 ----RVCEGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI  436 (484)
Q Consensus       366 ----r~~~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L  436 (484)
                          -......+.|.+.   ++||+++.+.++|.+.||||....  |.  ...-.|.|...+.    ++.++.|.+++
T Consensus       336 ~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~S--e~~is~vV~~~d~----~~Av~~Lh~~f  405 (421)
T 3ab4_A          336 TNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TS--EIRISVLIREDDL----DAAARALHEQF  405 (421)
T ss_dssp             SEEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE--EE--TTEEEEEEEGGGH----HHHHHHHHHHT
T ss_pred             ceEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE--cC--CCeEEEEEeHHHH----HHHHHHHHHHH
Confidence                0112466888886   799999999999999999999654  22  2333466643311    23567788887

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=91.08  E-value=0.52  Score=46.11  Aligned_cols=56  Identities=18%  Similarity=0.265  Sum_probs=44.3

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCCCCCCChH
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDISGNEVDMD  427 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~g~~l~~~  427 (484)
                      |.|-+...|+||-|+++-..|+.+|||+.+.+-+-...+ .+=.||| |.+|..-++.
T Consensus       201 tsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffv-D~eg~~~d~~  257 (283)
T 2qmx_A          201 TSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYA-DFIGHREDQN  257 (283)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEE-EEESCTTSHH
T ss_pred             EEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEE-EEecCCCcHH
Confidence            556666679999999999999999999999998866555 5567777 6678764443

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=90.59  E-value=0.51  Score=48.53  Aligned_cols=62  Identities=21%  Similarity=0.382  Sum_probs=48.6

Q ss_pred             ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCC-CCChHHHHHHHH
Q 048063          370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGN-EVDMDFVESMKK  434 (484)
Q Consensus       370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~-~l~~~~~~~l~~  434 (484)
                      ...|-+.-.|+||.+..|+.+|.++||||......+.|+.+--++-+.   +. +++++.+++|++
T Consensus       331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD---~~~~~~~~~l~~l~~  393 (404)
T 1sc6_A          331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIE---ADEDVAEKALQAMKA  393 (404)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEE---CCHHHHHHHHHHHHT
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcC---CCCCCCHHHHHHHhc
Confidence            356778889999999999999999999999999999777776666663   22 144556677754

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=89.97  E-value=1.1  Score=47.66  Aligned_cols=64  Identities=16%  Similarity=0.201  Sum_probs=48.7

Q ss_pred             CCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec--CCeeEEEEEEEeCCCCCCCCChhHHHHHH
Q 048063          129 YPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH--NDRLACVAYVSDQSTDTPIDDPGRLATIE  198 (484)
Q Consensus       129 ~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~--~~~~~dvF~V~~~~~g~~i~d~~~~~~l~  198 (484)
                      ..+.+..+.+.-.|+||.+.+|+..|.++|+||.+.++...  ++.+.-++.+...     +. ++.+++|+
T Consensus       450 ~~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~-----~~-~~~l~~l~  515 (529)
T 1ygy_A          450 LRAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD-----VP-DDVRTAIA  515 (529)
T ss_dssp             EESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC-----CC-HHHHHHHH
T ss_pred             ecCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC-----CC-HHHHHHHh
Confidence            34567888999999999999999999999999999999863  4556666655433     32 45555554

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=89.70  E-value=0.85  Score=46.82  Aligned_cols=50  Identities=14%  Similarity=0.171  Sum_probs=43.1

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEe
Q 048063          132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSD  181 (484)
Q Consensus       132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~  181 (484)
                      +...|.+.-.|+||.+..|+.+|.++|+||....+.+.++.+.-++.+..
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~  379 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEA  379 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEEC
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCC
Confidence            45668889999999999999999999999999999997777777666543

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=88.90  E-value=0.86  Score=45.18  Aligned_cols=66  Identities=15%  Similarity=0.245  Sum_probs=48.5

Q ss_pred             ceEEEEEec-CCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCCCCCCChH---HHHHHHHHh
Q 048063          370 GVRLELCAA-NRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDISGNEVDMD---FVESMKKEI  436 (484)
Q Consensus       370 ~t~leV~a~-DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~g~~l~~~---~~~~l~~~L  436 (484)
                      .|.|-+... |+||-|+++-..|+.+|||+.+.+-+-...+ .+=.||| |.+|..-++.   .++.|+...
T Consensus       201 kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d~~v~~aL~~L~~~~  271 (313)
T 3mwb_A          201 KTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSI-DADGHATDSRVADALAGLHRIS  271 (313)
T ss_dssp             EEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEE-EEESCTTSHHHHHHHHHHHHHC
T ss_pred             eEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEE-EEeCCCCcHHHHHHHHHHHHhc
Confidence            366767775 9999999999999999999999998865554 4557787 6677664443   334555543

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=88.77  E-value=5.4  Score=41.39  Aligned_cols=108  Identities=16%  Similarity=0.216  Sum_probs=69.0

Q ss_pred             CeEEEEEEe---cCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCC
Q 048063           36 DCTVVKVDS---VSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPS  112 (484)
Q Consensus        36 ~~t~I~V~~---~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~  112 (484)
                      +.+.|+|.+   ++.||..+++..+|+++|+||.-  |++...  --.|.|...+-..     ....+.+.|...     
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~--i~~~~~--~is~~V~~~d~~~-----~~~~~~~el~~~-----  362 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEH--MPSGVD--SVSLVIEDCKLDG-----KCDKIIEEIKKQ-----  362 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEE--BCEETT--EEEEEEEHHHHTT-----THHHHHHHHHHH-----
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEE--EecCCC--EEEEEEecchHHH-----HHHHHHHHHHHh-----
Confidence            345677775   68999999999999999999973  222221  2236665321110     122222223221     


Q ss_pred             ccccccccceeeecCCCCCCeEEEEEEec---CCCchHHHHHHHHHhCCCeEEEEEE
Q 048063          113 SAVAKTYTNKAVFGSEYPSEHTAIEMTGT---DRPGLFSEISAALADLHCNIVEAHA  166 (484)
Q Consensus       113 ~~~~~~~~~v~v~~~~~~~~~t~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~A~i  166 (484)
                      +.    +..+. ++    .+...|.|.+.   .+||+.+++..+|++.|+||....-
T Consensus       363 ~~----~~~v~-v~----~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsq  410 (446)
T 3tvi_A          363 CN----PDSIE-IH----PNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQ  410 (446)
T ss_dssp             SC----CSEEE-EE----EEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred             cC----CCcEE-Ee----CCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEe
Confidence            10    11233 22    25788888875   5999999999999999999987653

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=88.54  E-value=1.9  Score=43.07  Aligned_cols=48  Identities=15%  Similarity=0.290  Sum_probs=38.9

Q ss_pred             CCcchHHHHHHHHHhCCceEEEEEeeecCCee-eeEEEEEcCCCCCCChH
Q 048063          379 NRVGLLSDITRVLRENGLAVVRAHVATKGEKS-VNAFYLRDISGNEVDMD  427 (484)
Q Consensus       379 DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a-~d~F~v~~~~g~~l~~~  427 (484)
                      |+||-|+++-..|+.+|||+.+.+-+-...+- +=.||| |.+|..-++.
T Consensus       217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d~~  265 (329)
T 3luy_A          217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIV-TLDAAPWEER  265 (329)
T ss_dssp             CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEE-EESSCTTSHH
T ss_pred             CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEE-EEeCCcCCHH
Confidence            79999999999999999999999988666554 557776 7778764543

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=87.99  E-value=1.6  Score=46.28  Aligned_cols=61  Identities=21%  Similarity=0.352  Sum_probs=49.1

Q ss_pred             ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeec--CCeeeeEEEEEcCCCCCCChHHHHHHHH
Q 048063          370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATK--GEKSVNAFYLRDISGNEVDMDFVESMKK  434 (484)
Q Consensus       370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~--g~~a~d~F~v~~~~g~~l~~~~~~~l~~  434 (484)
                      .+.+-+.-.|+||.+..|+..|.++||||.+.++...  |+.+.-.+.+    ..+++++..++|++
T Consensus       454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v----d~~~~~~~l~~l~~  516 (529)
T 1ygy_A          454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL----DQDVPDDVRTAIAA  516 (529)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE----SSCCCHHHHHHHHH
T ss_pred             ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE----CCCCCHHHHHHHhc
Confidence            6888899999999999999999999999999999765  3445545555    34567778788875

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=87.01  E-value=1.7  Score=42.10  Aligned_cols=50  Identities=10%  Similarity=0.209  Sum_probs=41.0

Q ss_pred             ceEEEEEe---cCCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCC
Q 048063          370 GVRLELCA---ANRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDIS  420 (484)
Q Consensus       370 ~t~leV~a---~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~  420 (484)
                      .|.|-+..   .|+||-|+++-..|+.+|||+.+.+-+-...+ .+=.||| |.+
T Consensus       186 ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~e  239 (267)
T 2qmw_A          186 ATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFV-QAD  239 (267)
T ss_dssp             CSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEE-EES
T ss_pred             eEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEE-EEe
Confidence            35577777   89999999999999999999999998866554 5668888 555

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=86.07  E-value=3.1  Score=40.52  Aligned_cols=51  Identities=12%  Similarity=0.116  Sum_probs=42.5

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeeEEEEEEEeC
Q 048063          132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH-NDRLACVAYVSDQ  182 (484)
Q Consensus       132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~-~~~~~dvF~V~~~  182 (484)
                      ..|.|.+..+|+||-|+++-+.|+.+|+|+........ +....-.|||.-.
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~e  250 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFI  250 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEE
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEe
Confidence            45777777889999999999999999999999887764 4446678998765

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=84.97  E-value=1.6  Score=44.96  Aligned_cols=48  Identities=15%  Similarity=0.229  Sum_probs=40.9

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEE
Q 048063           36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHV   83 (484)
Q Consensus        36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V   83 (484)
                      +...|++.=.|+||.+.+|..+|+++|+||.+-...|.++++.-+.-|
T Consensus       342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~  389 (416)
T 3k5p_A          342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEA  389 (416)
T ss_dssp             SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEe
Confidence            568999999999999999999999999999987778888877533333

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=83.38  E-value=3.9  Score=42.44  Aligned_cols=131  Identities=10%  Similarity=0.103  Sum_probs=81.7

Q ss_pred             CceeEEEEEe---CCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHh-h
Q 048063          290 KGYSIVSVDC---KDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIE-R  365 (484)
Q Consensus       290 ~~~t~V~V~~---~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~-r  365 (484)
                      .+.+.|.|.+   ++.||..+++...|++.+++|..-  ++...  --+|.|...+-.     ...+.+.+.|...+. .
T Consensus       296 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i--~~~~~--~is~~V~~~d~~-----~~~~~~~~el~~~~~~~  366 (446)
T 3tvi_A          296 KNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM--PSGVD--SVSLVIEDCKLD-----GKCDKIIEEIKKQCNPD  366 (446)
T ss_dssp             EEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB--CEETT--EEEEEEEHHHHT-----TTHHHHHHHHHHHSCCS
T ss_pred             CCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE--ecCCC--EEEEEEecchHH-----HHHHHHHHHHHHhcCCC
Confidence            3566788886   699999999999999999999742  22211  223555442211     023444444444331 0


Q ss_pred             c---cCCceEEEEEec---CCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063          366 R---VCEGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDISGNEVDMDFVESMKKEI  436 (484)
Q Consensus       366 r---~~~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~g~~l~~~~~~~l~~~L  436 (484)
                      .   ......|.|++.   .+||+.+.+.++|.+.||||....   +|.. ..=.|.|...+.    +..+..|.+++
T Consensus       367 ~v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIs---qgtSei~Is~vV~~~d~----~~Av~aLH~~f  437 (446)
T 3tvi_A          367 SIEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMID---QGSSEINVIVGVETVDF----EKAVKSIYNAF  437 (446)
T ss_dssp             EEEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEE---ECSCTTEEEEEEEGGGH----HHHHHHHHHHH
T ss_pred             cEEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEE---ecCCCceEEEEEcHHHH----HHHHHHHHHHH
Confidence            0   112577888886   589999999999999999998876   3333 233466643311    22455666655

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=83.36  E-value=5.8  Score=40.75  Aligned_cols=50  Identities=16%  Similarity=0.209  Sum_probs=43.0

Q ss_pred             CCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEE
Q 048063          131 SEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVS  180 (484)
Q Consensus       131 ~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~  180 (484)
                      .....|.+.-.|+||.|..|..+|+++|+||..-...|.++.+.-+.-|.
T Consensus       341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~  390 (416)
T 3k5p_A          341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEAD  390 (416)
T ss_dssp             SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEEC
T ss_pred             CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEec
Confidence            35689999999999999999999999999999999999887765554443

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=82.97  E-value=0.99  Score=46.96  Aligned_cols=34  Identities=32%  Similarity=0.473  Sum_probs=30.4

Q ss_pred             ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEe
Q 048063          370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHV  403 (484)
Q Consensus       370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i  403 (484)
                      .|-+.+...|+||.|++|+.+|.++||+|.+..=
T Consensus       359 ~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q  392 (444)
T 3mtj_A          359 AYYLRLRAFDRPGVLADITRILADSSISIDAMVQ  392 (444)
T ss_dssp             EEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             eeEEEEEecCcccHHHHHHHHHHhcCCceeEEee
Confidence            5889999999999999999999999999988753

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=82.08  E-value=3.2  Score=43.10  Aligned_cols=52  Identities=17%  Similarity=0.257  Sum_probs=37.4

Q ss_pred             CCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec--CCeeEEEEEEEeC
Q 048063          131 SEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH--NDRLACVAYVSDQ  182 (484)
Q Consensus       131 ~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~--~~~~~dvF~V~~~  182 (484)
                      ...+-+.+...|+||.|++|+++|.++|++|.+..-.-.  ++....+..+|..
T Consensus       357 ~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~  410 (444)
T 3mtj_A          357 RTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHV  410 (444)
T ss_dssp             EEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECS
T ss_pred             ceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEecc
Confidence            356788888999999999999999999999988764322  1223456666664

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=81.67  E-value=9  Score=38.09  Aligned_cols=50  Identities=10%  Similarity=0.054  Sum_probs=38.4

Q ss_pred             eEEEEEEec--CCCchHHHHHHHHHhCCCeEEEEEEEecC-CeeEEEEEEEeC
Q 048063          133 HTAIEMTGT--DRPGLFSEISAALADLHCNIVEAHAWSHN-DRLACVAYVSDQ  182 (484)
Q Consensus       133 ~t~i~V~~~--DrpGLL~~Ia~vL~~~glnI~~A~i~T~~-~~~~dvF~V~~~  182 (484)
                      .+.+.+...  |+||-|+++-+.|+.+|+|+......... ....=.|||.-.
T Consensus       206 kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e  258 (329)
T 3luy_A          206 YESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLD  258 (329)
T ss_dssp             EEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEES
T ss_pred             ceEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEe
Confidence            344444444  79999999999999999999988877644 445678888765

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=80.13  E-value=23  Score=37.21  Aligned_cols=137  Identities=8%  Similarity=0.119  Sum_probs=84.3

Q ss_pred             CeEEEEEEe---cCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCC-cHHHHHHHHHHHccCCCCC
Q 048063           36 DCTVVKVDS---VSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLT-DQKVINYIQQAIGTTGEIP  111 (484)
Q Consensus        36 ~~t~I~V~~---~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~-~~~~~~~L~~~L~~~~~~~  111 (484)
                      +.+.|+|.+   .+++|..+++-.+|+++|+||.-- .++...   -+|.|...+..... ..+.++.+.+.|..     
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I-~sse~s---is~~v~~~~~~~~~~~~~~l~~~~~el~~-----  410 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVV-ATSEVS---ISLTLDPSKLWSRELIQQELDHVVEELEK-----  410 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEE-EEETTE---EEEEECCGGGSSSCCCHHHHHHHHHHHTT-----
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEE-EeCCCe---EEEEEechHhhhhhHHHHHHHHHHHHhCC-----
Confidence            456788875   789999999999999999999854 233322   23666432211100 12334444444432     


Q ss_pred             CccccccccceeeecCCCCCCeEEEEEEec--CCCchHHHHHHHHHhCCCeEEEEEEEecCCeeE-EEEEEEeCCCCCCC
Q 048063          112 SSAVAKTYTNKAVFGSEYPSEHTAIEMTGT--DRPGLFSEISAALADLHCNIVEAHAWSHNDRLA-CVAYVSDQSTDTPI  188 (484)
Q Consensus       112 ~~~~~~~~~~v~v~~~~~~~~~t~i~V~~~--DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~-dvF~V~~~~~g~~i  188 (484)
                       +      ..+. ++    .+...|.|.+.  ..||+.+++..+|++.|+||....   .|..-. -.|.|..       
T Consensus       411 -~------~~v~-~~----~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIs---qGsSei~Is~vV~~-------  468 (510)
T 2cdq_A          411 -I------AVVN-LL----KGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMIS---QGASKVNISFIVNE-------  468 (510)
T ss_dssp             -T------SEEE-EE----EEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEE---ECTTCSEEEEEEEH-------
T ss_pred             -C------CeEE-Ee----CCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEE---ecCCcceEEEEEeH-------
Confidence             1      1233 22    25677888876  788999999999999999998764   332222 2344433       


Q ss_pred             CChhHHHHHHHHHHHHhc
Q 048063          189 DDPGRLATIEEYITTVLR  206 (484)
Q Consensus       189 ~d~~~~~~l~~~L~~~L~  206 (484)
                         +..++.-++|++++-
T Consensus       469 ---~d~~~Av~aLH~~f~  483 (510)
T 2cdq_A          469 ---AEAEGCVQALHKSFF  483 (510)
T ss_dssp             ---HHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHh
Confidence               334566667777664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	484
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	1e-05
d1zpva1	83	d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Strepto	5e-05
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	7e-05
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	0.003
d1u8sa2	93	d.58.18.5 (A:88-180) putative transcriptional repr	0.002

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 131 SEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVS 180
           ++H  I   GTDRPG+ +E+   +    CNI+++           +  +S
Sbjct: 3   TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS 52

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 39.4 bits (92), Expect = 5e-05
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVS 180
           I + G D+ G+ + +S  +A+L  NI +      ++    +A VS
Sbjct: 5   ITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVS 49

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 39.0 bits (91), Expect = 7e-05
 Identities = 5/41 (12%), Positives = 16/41 (39%)

Query: 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLA 174
             + +   ++ G+  +++  +A+   NI  A  +       
Sbjct: 2   RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEH 42

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 10/73 (13%)

Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVD------- 425
           L + A N++G+L D+T ++ E G  +  A              L        D       
Sbjct: 4   LRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILER 63

Query: 426 ---MDFVESMKKE 435
               D++  +++E
Sbjct: 64  VKTFDYIIEIEEE 76

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 35.3 bits (81), Expect = 0.002
 Identities = 5/36 (13%), Positives = 13/36 (36%)

Query: 136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHND 171
           + +   D+ GL  + +   A     +    A + + 
Sbjct: 9   VYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISK 44

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	484
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.57
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.55
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.37
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.37
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.07
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.06
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.66
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.48
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.48
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.46
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.43
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.42
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.37
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.34
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.17
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.16
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.13
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.08
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	96.66
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	96.55
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.5
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.29
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	95.02
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	94.09
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	93.73
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	92.88
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	80.46

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.57  E-value=2.1e-07  Score=73.66  Aligned_cols=64  Identities=23%  Similarity=0.510  Sum_probs=55.7

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063          132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT  203 (484)
Q Consensus       132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~  203 (484)
                      .+.+|++.++||||++++++++|+++|+||.+++.++.++...-.+.|.-+        +..+++|+..|.+
T Consensus         4 ~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~--------~~~~~~l~~~L~~   67 (86)
T d1u8sa1           4 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPL   67 (86)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHH
T ss_pred             cEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC--------cccHHHHHHHHHH
Confidence            578999999999999999999999999999999999999988888877654        3456788877766

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.55  E-value=2.1e-07  Score=73.54  Aligned_cols=64  Identities=16%  Similarity=0.193  Sum_probs=52.8

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063           36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT  106 (484)
Q Consensus        36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~  106 (484)
                      .+++|++.|+||||++++++++|+++|+||.+++.++.+|.+.-.+.|.-+       +...+.+++.|..
T Consensus         4 ~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~-------~~~~~~l~~~L~~   67 (86)
T d1u8sa1           4 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-------PSNITRVETTLPL   67 (86)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-------HHHHHHHHHHHHH
T ss_pred             cEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC-------cccHHHHHHHHHH
Confidence            568999999999999999999999999999999999988988777766531       3455667766654

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.37  E-value=1.2e-06  Score=68.52  Aligned_cols=49  Identities=14%  Similarity=0.255  Sum_probs=43.7

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeC
Q 048063           38 TVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDE   86 (484)
Q Consensus        38 t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~   86 (484)
                      ++|+|.|+||||++++++++|+++|+||.+...++.++.+.-.+.+.-+
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~   51 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD   51 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEe
Confidence            5799999999999999999999999999999998888888777776644

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.37  E-value=1.2e-06  Score=68.61  Aligned_cols=64  Identities=19%  Similarity=0.317  Sum_probs=51.8

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHH
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTV  204 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~  204 (484)
                      ++|+|.|+||||++++|+++|+++|+||.+..-++.++.+.-.+.+..+ .+  .    ..++|+++|...
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~-~~--~----~~~~l~~~l~~l   66 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD-EK--Q----DFTYLRNEFEAF   66 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-SC--C----CHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEe-cC--C----CHHHHHHHHHHH
Confidence            6899999999999999999999999999999999888877777777654 22  1    236677777653

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.07  E-value=7.5e-06  Score=65.31  Aligned_cols=66  Identities=14%  Similarity=0.236  Sum_probs=46.9

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe----eeeEEEEE----cCCCCCCCh--HHHHHHHHHh
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK----SVNAFYLR----DISGNEVDM--DFVESMKKEI  436 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~----a~d~F~v~----~~~g~~l~~--~~~~~l~~~L  436 (484)
                      ..|+|.|.|||||+++||++|+++|+||..++..|+..+    ..+.|.+.    -+.+..+..  +..+.|.++|
T Consensus         7 v~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~~~~~l~~~l~~l~~~l   82 (93)
T d1u8sa2           7 VEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCTAL   82 (93)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCccccHHHHHHHHHHHHHHc
Confidence            456788999999999999999999999999998887543    34456642    233333222  3557788888

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.06  E-value=5.7e-06  Score=66.03  Aligned_cols=71  Identities=10%  Similarity=0.069  Sum_probs=47.5

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCe----eEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDR----LACVAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~----~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      ....|+|.|+|||||+++|+++|+++|+||.+.+..|....    ..+.|..+-. ...|-  ....+.|+++|....
T Consensus         5 ~tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~-~~~p~--~~~~~~l~~~l~~l~   79 (93)
T d1u8sa2           5 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAIS-ARVDS--GCNLMQLQEEFDALC   79 (93)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEE-EEECT--TSCHHHHHHHHHHHH
T ss_pred             eEEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEE-EEcCc--cccHHHHHHHHHHHH
Confidence            35678899999999999999999999999999998875432    2334543322 11111  123567888876533

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.66  E-value=8.1e-05  Score=56.11  Aligned_cols=48  Identities=15%  Similarity=0.190  Sum_probs=43.2

Q ss_pred             EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeC
Q 048063          135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQ  182 (484)
Q Consensus       135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~  182 (484)
                      +|.|..+|+||-|++++++|.+.|+||++..++..++.+.-+|.+.++
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd~   48 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNM   48 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECCH
Confidence            578889999999999999999999999999999988888888877543

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.48  E-value=0.00042  Score=52.99  Aligned_cols=63  Identities=19%  Similarity=0.325  Sum_probs=49.7

Q ss_pred             ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC--CeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063          370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKG--EKSVNAFYLRDISGNEVDMDFVESMKKEI  436 (484)
Q Consensus       370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g--~~a~d~F~v~~~~g~~l~~~~~~~l~~~L  436 (484)
                      ++.+-+.-.|+||+|+.|+.+|.++|+||....+.+..  +.|.-++.+    .++++++.+++|++--
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v----D~~~~~~vl~~I~~~~   67 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL----DQDVPDDVRTAIAAAV   67 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE----SSCCCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc----CCCccHHHHHHHHcCC
Confidence            46788999999999999999999999999999987654  444444443    3356778888888766

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.48  E-value=9.4e-05  Score=56.64  Aligned_cols=49  Identities=12%  Similarity=0.279  Sum_probs=35.6

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC-Cee--EEEEEEEeC
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN-DRL--ACVAYVSDQ  182 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~-~~~--~dvF~V~~~  182 (484)
                      .-|.|.+.||||+|++|+.+|+++|+||.+....+.. +.+  .-.|++.+.
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~   53 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   53 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcC
Confidence            4588999999999999999999999999999988733 333  345666554

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.46  E-value=0.00039  Score=53.13  Aligned_cols=48  Identities=19%  Similarity=0.231  Sum_probs=39.6

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe--cCCeeEEEEEE
Q 048063          132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS--HNDRLACVAYV  179 (484)
Q Consensus       132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T--~~~~~~dvF~V  179 (484)
                      ..+.+.+...|+||.+++|+.+|+++|+||...++.+  .++.+.-++.+
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v   51 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL   51 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc
Confidence            4577889999999999999999999999999999987  34445555544

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.43  E-value=0.00012  Score=56.07  Aligned_cols=69  Identities=20%  Similarity=0.332  Sum_probs=43.7

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC-Ce--eeeEEEEEcCCCCCCChHHHHHHHHHhCCCceEEe
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKG-EK--SVNAFYLRDISGNEVDMDFVESMKKEILGPIDLAV  444 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g-~~--a~d~F~v~~~~g~~l~~~~~~~l~~~L~~~~~~~~  444 (484)
                      ..|+|.+.||||+|++|+.+|+++++||.+....+.. +.  ..-.|++.+.+++ + ...+++|+. +  ..|..|
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~-l-~~ll~kL~~-l--~~V~~V   73 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGD-F-EKILERVKT-F--DYIIEI   73 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSC-H-HHHHHHHHT-C--TTEEEE
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCccc-H-HHHHHHHHc-C--CCeeEE
Confidence            3589999999999999999999999999999877643 23  4446666554333 2 334555543 3  235555

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.42  E-value=0.00032  Score=52.71  Aligned_cols=47  Identities=17%  Similarity=0.176  Sum_probs=41.7

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEee
Q 048063           39 VVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKD   85 (484)
Q Consensus        39 ~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d   85 (484)
                      +|.|..+|+||-|++++++|.+.|+||...+.+...++.+-+|.|.|
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            47888999999999999999999999999998766788888888854

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.37  E-value=0.00028  Score=52.87  Aligned_cols=45  Identities=18%  Similarity=0.313  Sum_probs=40.0

Q ss_pred             EEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEE
Q 048063          372 RLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYL  416 (484)
Q Consensus       372 ~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v  416 (484)
                      .+.|...||||.|++|+.+|.++||||.+..+....+.+.-.|.+
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv   49 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV   49 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEE
Confidence            488999999999999999999999999999998777777666655

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.34  E-value=0.00048  Score=51.55  Aligned_cols=47  Identities=26%  Similarity=0.247  Sum_probs=39.4

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEee
Q 048063           39 VVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKD   85 (484)
Q Consensus        39 ~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d   85 (484)
                      ++.|+..||||.+++++++|+..|+||.+-.+....++.+-.|.|.+
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~~   51 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSD   51 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESC
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEECC
Confidence            68999999999999999999999999998888555555566676643

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.0009  Score=50.75  Aligned_cols=65  Identities=14%  Similarity=0.173  Sum_probs=49.3

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      ..|.+...|+||+|++|+++|+..|+||.+..+.- .......+-.+...       +++.++++...|.+..
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~-------~~~~i~qi~kQL~Kli   67 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG-------DEKVLEQIEKQLHKLV   67 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES-------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEEC-------CHHHHHHHHHHHhCCC
Confidence            46788899999999999999999999999999884 55444433333332       3567788888887754

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.0019  Score=49.84  Aligned_cols=43  Identities=14%  Similarity=0.177  Sum_probs=37.4

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeE
Q 048063          132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLA  174 (484)
Q Consensus       132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~  174 (484)
                      ....|.+.-.|+||.+++|+.+|+++|+||.+....+.++...
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~   52 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGY   52 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcE
Confidence            4467888899999999999999999999999999888765544

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.13  E-value=0.00086  Score=51.00  Aligned_cols=65  Identities=12%  Similarity=0.208  Sum_probs=49.6

Q ss_pred             EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEE-ecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063          134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAW-SHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL  205 (484)
Q Consensus       134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~-T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L  205 (484)
                      ..|.+...|+||+|++|++.|+..|+||.+..+. |.......+-.+...       +++.++++...|.+..
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~-------~~~~i~qi~kQL~Klv   68 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG-------PDEIVEQITKQLNKLI   68 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE-------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC-------CHHHHHHHHHHHhCCc
Confidence            4678999999999999999999999999999988 455555533333332       2567788888887754

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.08  E-value=0.0012  Score=50.30  Aligned_cols=65  Identities=15%  Similarity=0.232  Sum_probs=47.5

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHH
Q 048063          133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTV  204 (484)
Q Consensus       133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~  204 (484)
                      ...|.+...|+||+|++|++.|+..|+||.+..+.. .......+-.+...       +++..+++...|.+.
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g-------~~~~i~qi~kQl~Kl   68 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG-------DDKTIEQIEKQAYKL   68 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE-------CTTHHHHHHHHHTTS
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEc-------CHHHHHHHHHHHhCC
Confidence            367899999999999999999999999999999876 44444433333332       134567777776553

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=96.66  E-value=0.0036  Score=47.57  Aligned_cols=63  Identities=11%  Similarity=0.286  Sum_probs=44.8

Q ss_pred             ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063          370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI  436 (484)
Q Consensus       370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L  436 (484)
                      .+.+.+...|+||+|+.|+..|.+.|+||.+..+........-.+-++- +|.   ++..+++..+|
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv-~g~---~~~i~qi~kQl   65 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMV-KGD---DKTIEQIEKQA   65 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEE-EEC---TTHHHHHHHHH
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEE-EcC---HHHHHHHHHHH
Confidence            3679999999999999999999999999999998865544433333322 132   22345555555

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.0046  Score=46.68  Aligned_cols=46  Identities=17%  Similarity=0.296  Sum_probs=37.1

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEE
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYL  416 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v  416 (484)
                      ..+.+...|+||+|+.|+..|++.|+||.+..+.-......-.|-+
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~ti   47 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTI   47 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEE
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEE
Confidence            4688999999999999999999999999999998443443333433

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.50  E-value=0.0035  Score=47.46  Aligned_cols=39  Identities=21%  Similarity=0.307  Sum_probs=34.4

Q ss_pred             eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe
Q 048063          371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK  409 (484)
Q Consensus       371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~  409 (484)
                      +.+.+...|+||+|+.|+..|++.|+||.+..+.-....
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~   41 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDP   41 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSST
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCC
Confidence            468899999999999999999999999999999844333

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.021  Score=43.65  Aligned_cols=41  Identities=12%  Similarity=0.272  Sum_probs=34.8

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCe
Q 048063           36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGW   76 (484)
Q Consensus        36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~   76 (484)
                      +...+++.-.|+||.+++++++|++.|+||.+-...+.++.
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~   50 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQM   50 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCC
Confidence            34678888999999999999999999999999887665443

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.02  E-value=0.042  Score=41.55  Aligned_cols=49  Identities=8%  Similarity=0.152  Sum_probs=38.4

Q ss_pred             EecCCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCCCCCCCh
Q 048063          376 CAANRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDISGNEVDM  426 (484)
Q Consensus       376 ~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~g~~l~~  426 (484)
                      ...|+||-|+++-..|+++|||+.+..-+-...+ -+=.||| |-+|.. .+
T Consensus         8 ~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~i-d~~g~~-~~   57 (80)
T d2qmwa2           8 PMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFV-QADSAI-TT   57 (80)
T ss_dssp             ESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEE-EESCCS-CH
T ss_pred             eCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEE-EEecCC-cH
Confidence            3469999999999999999999999998755544 5557888 446753 44

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.09  E-value=0.031  Score=43.94  Aligned_cols=65  Identities=15%  Similarity=0.322  Sum_probs=48.9

Q ss_pred             ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCCCCCCChH---HHHHHHHHh
Q 048063          370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDISGNEVDMD---FVESMKKEI  436 (484)
Q Consensus       370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~g~~l~~~---~~~~l~~~L  436 (484)
                      .|.|-+...|+||-|+++-..|+++|||+.+..-+-.... .+=.||| |.+|.. ++.   .++.|++.+
T Consensus        16 ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~i-d~eg~~-~~~i~~~l~~L~~~~   84 (97)
T d1phza1          16 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT-YLDKRT-KPVLGSIIKSLRNDI   84 (97)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE-CBCGGG-HHHHHHHHHHHHHTT
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEE-EcccCC-hHHHHHHHHHHHHhh
Confidence            4778888899999999999999999999999988765544 4447888 667763 232   335555555

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.73  E-value=0.084  Score=41.33  Aligned_cols=55  Identities=4%  Similarity=0.056  Sum_probs=44.0

Q ss_pred             CCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeC
Q 048063          128 EYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQ  182 (484)
Q Consensus       128 ~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~  182 (484)
                      ....+.|.|.+..+|+||-|+++-..|+.+|+|+....... .+....=.|||.-.
T Consensus        11 ~~~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~e   66 (97)
T d1phza1          11 SNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD   66 (97)
T ss_dssp             CCSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC
T ss_pred             CCCCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEcc
Confidence            34456788888899999999999999999999998887765 44445567988654

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.88  E-value=0.35  Score=36.17  Aligned_cols=47  Identities=15%  Similarity=0.204  Sum_probs=37.4

Q ss_pred             EEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeC
Q 048063          136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQ  182 (484)
Q Consensus       136 i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~  182 (484)
                      +.+...|+||-|+++-..|+.+|+|+..-.... .+....=.|||.-.
T Consensus         5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~   52 (80)
T d2qmwa2           5 LITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD   52 (80)
T ss_dssp             EEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES
T ss_pred             EEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEe
Confidence            333456999999999999999999999988775 34445677988875

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.46  E-value=0.85  Score=34.76  Aligned_cols=34  Identities=12%  Similarity=0.298  Sum_probs=30.8

Q ss_pred             CeEEEEEEec---CCCchHHHHHHHHHhCCCeEEEEE
Q 048063          132 EHTAIEMTGT---DRPGLFSEISAALADLHCNIVEAH  165 (484)
Q Consensus       132 ~~t~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~A~  165 (484)
                      +.+.|.|.+.   ++||++++|..+|+++|+||....
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            5788999874   999999999999999999999876