Citrus Sinensis ID: 048080

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGGSRKSKFSILIKVVIQVIVLCLILVVFFIVVYGRRRRSTQKSSNKLSMEQQYPM
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHccccccccccccccccccHHHHccccccccccccccccccccccHHccccccEEEcccccccccccHHHHccccccEEcccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHccccccEEEEcccccccccccHHHHcccHHcEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccccccccHHHHHHHHcccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
nrppslgncqnlillttcknklsgtvprQLLRIITRSVLLDLFDnllsghfpaevgnlKHLVSldissnmfsgeipttlggctslehlsmqdnsftgsipstlsslKSITEldlsrnnlsghipqylenlSFLSFLNLSynhfegkvpIEAIfnstkgislvgnenlcggsrksKFSILIKVVIQVIVLCLILVVFFIVVYgrrrrstqkssnklsmeqqypm
Flexible Loop (DISEMBL)
nrppslgncQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGGSRKSKFSILIKVVIQVIVLCLILVVFFIVVYgrrrrstqkssnklsmeqqypm
Low Complexity Region (SEG)
NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYlenlsflsflnlsynhfEGKVPIEAIFNSTKGISLVGNENLCGGSRKSKFSilikvviqvivlclilvvffivvYGRRRRSTQKSSNKLSMEQQYPM
Disordered region (IsUnstruct)
*******NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHL*********************TELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGGSRKSKFSILIKVVIQVIVLCLILVVFFIVVYGR********************
Disordered Region (DISOPRED)
NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGGSRKSKFSILIKVVIQVIVLCLILVVFFIVVY*******************YPM
Disordered Region (DISEMBL)
NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGGSRKSKFSILIKVVIQVIVLCLILVVFFIVVYGRR*******************
Disordered Region (DISPRO)
NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGGSRKSKFSILIKVVIQVIVLCLILVVFFIVVYGRRRRST***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGGSRKSKFSILIKVVIQVIVLCLILVVFFIVVYGRRRRSTQKSSNKLSMEQQYPM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
C0LGT6	1031	LRR receptor-like serine/	yes	no	0.928	0.200	0.412	1e-39
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.937	0.206	0.386	4e-37
Q9SD62	1025	Putative receptor-like pr	no	no	0.744	0.161	0.482	4e-31
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.910	0.207	0.350	3e-25
O49318	1124	Probable leucine-rich rep	no	no	0.766	0.152	0.381	1e-23
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.928	0.173	0.349	4e-23
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.860	0.153	0.323	7e-23
Q9LHP4	1141	Receptor-like protein kin	no	no	0.650	0.127	0.397	8e-23
Q9LP24	1120	Probable leucine-rich rep	no	no	0.771	0.153	0.385	1e-22
Q9FL28	1173	LRR receptor-like serine/	no	no	0.775	0.147	0.336	2e-22

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  162 bits (411), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/228 (41%), Positives = 135/228 (59%), Gaps = 21/228 (9%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P SLG C+ L+ L    N+L+GT+P+++L+I + + + DL +N L+GHFP EVG L+ LV
Sbjct: 458 PQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAYI-DLSNNFLTGHFPEEVGKLELLV 516

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            L  S N  SG++P  +GGC S+E L MQ NSF G+IP  +S L S+  +D S NNLSG 
Sbjct: 517 GLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIPD-ISRLVSLKNVDFSNNNLSGR 575

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGGSR---------- 172
           IP+YL +L  L  LNLS N FEG+VP   +F +   +S+ GN N+CGG R          
Sbjct: 576 IPRYLASLPSLRNLNLSMNKFEGRVPTTGVFRNATAVSVFGNTNICGGVREMQLKPCIVQ 635

Query: 173 -----KSKFSILIKVV----IQVIVLCLILVVFFIVVYGRRRRSTQKS 211
                +   S+  KVV    I +  L LI++V  +  + +R++    S
Sbjct: 636 ASPRKRKPLSVRKKVVSGICIGIASLLLIIIVASLCWFMKRKKKNNAS 683

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  154 bits (390), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 89/230 (38%), Positives = 139/230 (60%), Gaps = 21/230 (9%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P SLGNC +L+ L    NKL+GT+P ++++I  + + LD+  N L G  P ++G L++L 
Sbjct: 450 PTSLGNCSHLLELWIGDNKLNGTIPLEIMKI-QQLLRLDMSGNSLIGSLPQDIGALQNLG 508

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
           +L +  N  SG++P TLG C ++E L ++ N F G IP  L  L  + E+DLS N+LSG 
Sbjct: 509 TLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPD-LKGLVGVKEVDLSNNDLSGS 567

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGGSR---------- 172
           IP+Y  + S L +LNLS+N+ EGKVP++ IF +   +S+VGN +LCGG            
Sbjct: 568 IPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCGGIMGFQLKPCLSQ 627

Query: 173 -----KSKFSILIKVVIQVIVLCLILVVFFI----VVYGRRRRSTQKSSN 213
                K   S L KVVI V V   +L++ F+    +++ R+R+  ++++N
Sbjct: 628 APSVVKKHSSRLKKVVIGVSVGITLLLLLFMASVTLIWLRKRKKNKETNN 677

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  134 bits (337), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/168 (48%), Positives = 111/168 (66%), Gaps = 2/168 (1%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P SLG+C  L+ L    NKL+G++P +L+ + +  V+L++  NLL G    ++G LK L+
Sbjct: 466 PSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSL-VVLNVSFNLLVGPLRQDIGKLKFLL 524

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
           +LD+S N  SG+IP TL  C SLE L +Q NSF G IP  +  L  +  LDLS+NNLSG 
Sbjct: 525 ALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPD-IRGLTGLRFLDLSKNNLSGT 583

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG 170
           IP+Y+ N S L  LNLS N+F+G VP E +F +T  +S+ GN NLCGG
Sbjct: 584 IPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLCGG 631

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score =  115 bits (287), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 115/211 (54%), Gaps = 8/211 (3%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITR-SVLLDLFDNLLSGHFPAEVGNLKHL 61
           P SLG C NL +L    N L+GT+P +++  +    + L+L  N LSG  P E+  +  +
Sbjct: 410 PQSLGKCINLEILDLSHNNLTGTIPVEVVSNLRNLKLYLNLSSNHLSGPIPLELSKMDMV 469

Query: 62  VSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 121
           +S+D+SSN  SG+IP  LG C +LEHL++  N F+ ++PS+L  L  + ELD+S N L+G
Sbjct: 470 LSVDLSSNELSGKIPPQLGSCIALEHLNLSRNGFSSTLPSSLGQLPYLKELDVSFNRLTG 529

Query: 122 HIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG-------SRKS 174
            IP   +  S L  LN S+N   G V  +  F+     S +G+  LCG         +K 
Sbjct: 530 AIPPSFQQSSTLKHLNFSFNLLSGNVSDKGSFSKLTIESFLGDSLLCGSIKGMQACKKKH 589

Query: 175 KFSILIKVVIQVIVLCLILVVFFIVVYGRRR 205
           K+  ++  V+  ++   +L VF   +  R R
Sbjct: 590 KYPSVLLPVLLSLIATPVLCVFGYPLVQRSR 620

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  109 bits (273), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 97/173 (56%), Gaps = 2/173 (1%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P  + NC+ L  L   +N   G++P +L  +    +L  L +N  SG+ P  +GNL HL 
Sbjct: 558 PSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEIL-RLSENRFSGNIPFTIGNLTHLT 616

Query: 63  SLDISSNMFSGEIPTTLGGCTSLE-HLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 121
            L +  N+FSG IP  LG  +SL+  +++  N F+G IP  + +L  +  L L+ N+LSG
Sbjct: 617 ELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSG 676

Query: 122 HIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGGSRKS 174
            IP   ENLS L   N SYN+  G++P   IF +    S +GN+ LCGG  +S
Sbjct: 677 EIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGGHLRS 729

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  108 bits (269), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 106/212 (50%), Gaps = 5/212 (2%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P  +GN   L  L    N+L+G +P     ++   V L+L  N L G  PA +GNLK L 
Sbjct: 645 PKEMGNSLKLQGLNLANNQLNGHIPESF-GLLGSLVKLNLTKNKLDGPVPASLGNLKELT 703

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            +D+S N  SGE+ + L     L  L ++ N FTG IPS L +L  +  LD+S N LSG 
Sbjct: 704 HMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGE 763

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCG---GSRKSKFSIL 179
           IP  +  L  L FLNL+ N+  G+VP + +        L GN+ LCG   GS        
Sbjct: 764 IPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRVVGSDCKIEGTK 823

Query: 180 IKVVIQVIVLCL-ILVVFFIVVYGRRRRSTQK 210
           ++    +  L L   ++ F+ V+  RR +  K
Sbjct: 824 LRSAWGIAGLMLGFTIIVFVFVFSLRRWAMTK 855

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  107 bits (267), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 116/213 (54%), Gaps = 21/213 (9%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P  + +  N++ L    N L+G++P+++  +   + L +L +N LSG  P+ +G L  L 
Sbjct: 689 PTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNAL-NLEENQLSGPLPSTIGKLSKLF 747

Query: 63  SLDISSNMFSGEIPTTLGGCTSLE-HLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 121
            L +S N  +GEIP  +G    L+  L +  N+FTG IPST+S+L  +  LDLS N L G
Sbjct: 748 ELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVG 807

Query: 122 HIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCG--------GSRK 173
            +P  + ++  L +LNLSYN+ EGK+  +  F+  +  + VGN  LCG           K
Sbjct: 808 EVPGQIGDMKSLGYLNLSYNNLEGKLKKQ--FSRWQADAFVGNAGLCGSPLSHCNRAGSK 865

Query: 174 SKFSILIKVVI---------QVIVLCLILVVFF 197
           ++ S+  K V+          + ++ L++++FF
Sbjct: 866 NQRSLSPKTVVIISAISSLAAIALMVLVIILFF 898

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  107 bits (266), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 89/146 (60%), Gaps = 1/146 (0%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P  LGNC  L+ L   +N LSG++PR++ ++ T+   L L+ N L G  P E+GN  +L 
Sbjct: 267 PSDLGNCSELVDLFLYENSLSGSIPREIGQL-TKLEQLFLWQNSLVGGIPEEIGNCSNLK 325

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            +D+S N+ SG IP+++G  + LE   + DN F+GSIP+T+S+  S+ +L L +N +SG 
Sbjct: 326 MIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGL 385

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVP 148
           IP  L  L+ L+      N  EG +P
Sbjct: 386 IPSELGTLTKLTLFFAWSNQLEGSIP 411

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  106 bits (264), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/174 (38%), Positives = 100/174 (57%), Gaps = 2/174 (1%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           PP LGN +++  L   +NKL+G++P  L  +    VL  L++N L+G  P E+GN++ + 
Sbjct: 215 PPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLY-LYENYLTGVIPPEIGNMESMT 273

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
           +L +S N  +G IP++LG   +L  LS+  N  TG IP  L +++S+ +L+LS N L+G 
Sbjct: 274 NLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGS 333

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGGSRKSKF 176
           IP  L NL  L+ L L  N+  G +P E + N    I L  N N   GS  S F
Sbjct: 334 IPSSLGNLKNLTILYLYENYLTGVIPPE-LGNMESMIDLQLNNNKLTGSIPSSF 386

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  105 bits (262), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 102/199 (51%), Gaps = 26/199 (13%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVL-LDLFDNLLSGHFPAEVGNLKHL 61
           P SL +   L       N L+GT+P +LL  +    L L+  +NLL+G  P E+G L+ +
Sbjct: 592 PASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMV 651

Query: 62  VSLDISSNMFSGEIPTTLGGCTS-------------------------LEHLSMQDNSFT 96
             +D+S+N+FSG IP +L  C +                         +  L++  NSF+
Sbjct: 652 QEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFS 711

Query: 97  GSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNST 156
           G IP +  ++  +  LDLS NNL+G IP+ L NLS L  L L+ N+ +G VP   +F + 
Sbjct: 712 GEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNI 771

Query: 157 KGISLVGNENLCGGSRKSK 175
               L+GN +LCG  +  K
Sbjct: 772 NASDLMGNTDLCGSKKPLK 790

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
357497599	1002	CCP [Medicago truncatula] gi|355494103|g	0.964	0.214	0.450	2e-48
357484501	1006	Kinase-like protein [Medicago truncatula	0.973	0.215	0.438	3e-47
357497603	1027	CCP [Medicago truncatula] gi|355494105|g	0.964	0.209	0.442	3e-46
224115346	1017	predicted protein [Populus trichocarpa]	0.977	0.214	0.448	1e-44
449441592	1023	PREDICTED: probable LRR receptor-like se	0.973	0.212	0.429	2e-44
449499190	1023	PREDICTED: LOW QUALITY PROTEIN: probable	0.959	0.209	0.439	5e-44
224121660	774	predicted protein [Populus trichocarpa]	0.941	0.271	0.453	3e-43
224127492	1022	predicted protein [Populus trichocarpa]	0.986	0.215	0.417	4e-43
255581223	1015	receptor-kinase, putative [Ricinus commu	0.946	0.207	0.428	6e-43
357497597	1023	Receptor-like protein kinase [Medicago t	0.964	0.210	0.416	8e-43

>gi|357497599|ref|XP_003619088.1| CCP [Medicago truncatula] gi|355494103|gb|AES75306.1| CCP [Medicago truncatula]

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 105/233 (45%), Positives = 152/233 (65%), Gaps = 18/233 (7%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           PPSLGNCQNL  L    NKL GT+P ++L + + S+LL+L  N LSG  P EVG LK++ 
Sbjct: 444 PPSLGNCQNLQYLDLSHNKLRGTIPVEVLNLFSLSILLNLSHNSLSGTLPREVGMLKNIA 503

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            LD+S N  SG+IP  +G CTSLE++ +Q NSF G+IPS+L+SLK +  LDLSRN LSG 
Sbjct: 504 ELDVSENHLSGDIPREIGECTSLEYIHLQRNSFNGTIPSSLASLKGLRYLDLSRNQLSGS 563

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG------------ 170
           IP  ++N+SFL + N+S+N  EG+VP + +F ++  I L+GN+ LCGG            
Sbjct: 564 IPDGMQNISFLEYFNVSFNMLEGEVPTKGLFGNSTQIELIGNKKLCGGISHLHLPPCSIK 623

Query: 171 ----SRKSKFSILIKVVIQVIVLCLILVVFFIVVYGRRRRSTQKSSNKLSMEQ 219
               +++ KF  LI V++ V+   LIL  F I +Y  R+R+ ++S +  +++Q
Sbjct: 624 GRKHAKQHKFR-LIAVIVSVVSFILIL-SFIITIYMMRKRNQKRSFDSPTIDQ 674

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484501|ref|XP_003612538.1| Kinase-like protein [Medicago truncatula] gi|355513873|gb|AES95496.1| Kinase-like protein [Medicago truncatula]

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 103/235 (43%), Positives = 149/235 (63%), Gaps = 18/235 (7%)

Query: 1   NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKH 60
           N PPS+ NCQ L  L    NKLSGT+P ++  I + S LL+L  N LSG  P EVG LK+
Sbjct: 442 NIPPSIENCQKLQYLDLSHNKLSGTIPSEIFHIFSLSNLLNLSHNFLSGSLPREVGLLKN 501

Query: 61  LVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
           +  LD+S N  SG+IPTT+G CT+LE+L +Q NSF G+IPS+L+SL+ +  LDLSRN LS
Sbjct: 502 IDWLDVSENHLSGDIPTTIGDCTALEYLHLQGNSFNGTIPSSLASLEGLQHLDLSRNRLS 561

Query: 121 GHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG---------- 170
           G IP  ++N+S L +LN+S+N  EG+VP   +F +   + L+GN  LCGG          
Sbjct: 562 GSIPDVMQNISVLEYLNVSFNMLEGEVPKNGVFGNVTKVELIGNNKLCGGILLLHLPPCP 621

Query: 171 ------SRKSKFSILIKVVIQVIVLCLILVVFFIVVYGRRRRSTQKSSNKLSMEQ 219
                 ++  KF +L+ V++ V+   LIL  F I +Y  R+R+ ++S +  +++Q
Sbjct: 622 IKGRKDTKHHKF-MLVAVIVSVVFFLLIL-SFIITIYWVRKRNNKRSIDSPTIDQ 674

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357497603|ref|XP_003619090.1| CCP [Medicago truncatula] gi|355494105|gb|AES75308.1| CCP [Medicago truncatula]

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 103/233 (44%), Positives = 150/233 (64%), Gaps = 18/233 (7%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           PPS+GNCQNL  L    NKL GT+P ++L + + S+LL+L  N LSG  P EVG LK++ 
Sbjct: 469 PPSIGNCQNLQSLDLSHNKLRGTIPVEVLNLFSLSILLNLSHNSLSGSLPREVGMLKNIE 528

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
           +LD+S N  SG+IP  +G CTSLE++ +Q NSF G+IPS+L+ LK +  LDLSRN LSG 
Sbjct: 529 ALDVSENHLSGDIPREIGECTSLEYIHLQRNSFNGTIPSSLTFLKGLRYLDLSRNQLSGS 588

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG------------ 170
           IP  ++N+S L +LN+S+N  EG+VP   +F +   I L+GN+ LCGG            
Sbjct: 589 IPDGMQNISVLEYLNVSFNMLEGEVPTNGVFGNATQIDLIGNKKLCGGISHLHLPPCPIK 648

Query: 171 ----SRKSKFSILIKVVIQVIVLCLILVVFFIVVYGRRRRSTQKSSNKLSMEQ 219
               +++ KF  LI V++ V+   LIL  F I +Y  R+R+ ++S +  +++Q
Sbjct: 649 GRKHAKQHKFR-LIAVLVSVVSFILIL-SFIITIYMMRKRNQKRSFDSPTIDQ 699

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115346|ref|XP_002317009.1| predicted protein [Populus trichocarpa] gi|222860074|gb|EEE97621.1| predicted protein [Populus trichocarpa]

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 105/234 (44%), Positives = 152/234 (64%), Gaps = 16/234 (6%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P S+GNCQ L+LL   +N LSG  P++L  I + SV LDL  N  +G  P+E+G+LK L 
Sbjct: 465 PSSIGNCQKLLLLHLSRNNLSGNAPKELFAISSLSVSLDLSQNYFNGSLPSEIGSLKSLA 524

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            L++S N FSGEIP+TL  CTSLE+L MQ N F GSIPS+ S+L+ I +LDLS NNLSG 
Sbjct: 525 KLNVSYNEFSGEIPSTLASCTSLEYLYMQHNFFQGSIPSSFSTLRGIQKLDLSHNNLSGQ 584

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG-----------S 171
           IP++L+  + L+ LNLS+N FEG+VP +  F +   IS+ GN+ LCGG            
Sbjct: 585 IPKFLDTFALLT-LNLSFNDFEGEVPTKGAFGNATAISVDGNKKLCGGISELKLPKCNFK 643

Query: 172 RKSKFSILIKVVIQVIVLCLIL---VVFFIVVYGRRRRSTQKSSNKLSMEQQYP 222
           +  K+ I + +++ + + C  L   VV F+++Y  RR+  ++SS +LS+++  P
Sbjct: 644 KSKKWKIPLWLILLLTIACGFLGVAVVSFVLLYLSRRKRKEQSS-ELSLKEPLP 696

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441592|ref|XP_004138566.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/235 (42%), Positives = 146/235 (62%), Gaps = 18/235 (7%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           PPSLG  Q+L++L   +N+LSG +P++LL I + S+ LDL +N L+G  P EVG L +L 
Sbjct: 464 PPSLGESQSLLMLALSQNQLSGAIPKELLSISSLSIALDLSENYLTGSIPLEVGKLVNLG 523

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            L IS NM +G IP+TL  CTSLE L +  N   G IP +LSSL+ I ELDLSRNNLSG 
Sbjct: 524 YLHISDNMLTGVIPSTLSACTSLEDLYLDGNFLEGPIPESLSSLRGIEELDLSRNNLSGK 583

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG------------ 170
           IP YL+    LS+LNLS+N+ EG+VP + +F +T   S++GN+ LC G            
Sbjct: 584 IPTYLQEFEVLSYLNLSFNNLEGEVPTQGVFKNTTAFSILGNKKLCNGINELNLPRCRLD 643

Query: 171 -SRKSKFSILIKVVIQVI---VLCLILVVFFIVVYGRRRRSTQKSSNKLSMEQQY 221
             RK K +  +K++I V+   V  L+++   +  + R++++  KS    S++  Y
Sbjct: 644 YPRKQKLTTKLKIIISVVSGLVGALLIICCLLFFWSRKKKN--KSDLSPSLKASY 696

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499190|ref|XP_004160745.1| PREDICTED: LOW QUALITY PROTEIN: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 102/232 (43%), Positives = 141/232 (60%), Gaps = 18/232 (7%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           PPSLG  Q+L++L   +N+LSG +P++LL I + S+ LDL +N L+G  P EVG L +L 
Sbjct: 464 PPSLGESQSLLMLALSQNQLSGAIPKELLSISSLSIALDLSENYLTGSIPLEVGKLVNLG 523

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            L IS NM +G IP+TL  CTSLE L +  N   G IP +LSSL+ I ELDLSRNNLSG 
Sbjct: 524 YLHISDNMLTGVIPSTLSACTSLEDLYLDGNFLEGPIPESLSSLRGIEELDLSRNNLSGK 583

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG------------ 170
           IP YL+    LS+LNLS+N+ EG+VP + +F +T   S++GN+ LC G            
Sbjct: 584 IPTYLQEFEVLSYLNLSFNNLEGEVPTQGVFKNTTAFSILGNKKLCNGINELNLPRCRLD 643

Query: 171 -SRKSKFSILIKVVIQVI-----VLCLILVVFFIVVYGRRRRSTQKSSNKLS 216
             RK K +  +K++I V+      L +I  + F +V   + +S    S K S
Sbjct: 644 YPRKQKLTTKLKIIISVVSGLVGALLIICCLLFXLVKEEKNKSDLSPSLKAS 695

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121660|ref|XP_002330621.1| predicted protein [Populus trichocarpa] gi|222872225|gb|EEF09356.1| predicted protein [Populus trichocarpa]

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/225 (45%), Positives = 142/225 (63%), Gaps = 15/225 (6%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P +LGNCQNL+ L    N LSG +P++LL I   +V L+L +N L+G  P EVGNL HL 
Sbjct: 197 PSNLGNCQNLLELGLSNNNLSGPIPKELLSIPLGTVSLNLSENHLTGSLPLEVGNLVHLG 256

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            +D+S N  SGEIP +LG C SLE LS++ N F GSIP +LSSL+++  LDLS NNLSG 
Sbjct: 257 EIDVSKNRLSGEIPRSLGSCASLELLSLKGNFFKGSIPESLSSLRALKVLDLSYNNLSGQ 316

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG------SR---- 172
           IP++L +L  L  L+LS+N  EG+VP++ +F +T  IS+ GN+ LCGG      SR    
Sbjct: 317 IPKFLGDLKLLESLDLSFNDLEGQVPVQGVFGNTSVISIAGNKKLCGGIPQLNLSRCTTN 376

Query: 173 -----KSKFSILIKVVIQVIVLCLILVVFFIVVYGRRRRSTQKSS 212
                KS   ILI  +   +++ ++LV   +  + R+ +  Q SS
Sbjct: 377 ESAKLKSSTKILIVAMSGGLLVVILLVSSMLFYFFRKTKDMQASS 421

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127492|ref|XP_002329291.1| predicted protein [Populus trichocarpa] gi|222870745|gb|EEF07876.1| predicted protein [Populus trichocarpa]

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 98/235 (41%), Positives = 147/235 (62%), Gaps = 15/235 (6%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           PPSLGN Q L+ L   +N LSG +P++L+ I + S+ L L +N L+G  P E+  L +L 
Sbjct: 461 PPSLGNWQKLLSLALSQNNLSGPIPKELVSIPSLSMYLVLSENELTGSLPIEMEKLVNLG 520

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            LD+S N FSGEIP +LG C SLE L +++N   G IP TLSSL++I EL+LS NNL+G 
Sbjct: 521 YLDVSKNRFSGEIPKSLGSCVSLESLHLEENFLQGPIPITLSSLRAIQELNLSYNNLTGQ 580

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG------------ 170
           IP++LE+   L  LNLS+N FEG+VP++  F +T  IS+ GN+ LCGG            
Sbjct: 581 IPEFLEDFKLLESLNLSFNDFEGEVPVQGAFQNTSAISIFGNKKLCGGIPQLNLTRCPSS 640

Query: 171 --SRKSKFSILIKVVIQVI-VLCLILVVFFIVVYGRRRRSTQKSSNKLSMEQQYP 222
             +     + LI ++  V   L +IL++ F++ Y  R++  + ++++ S+E  +P
Sbjct: 641 EPTNSKSPTKLIWIIGSVCGFLGVILIISFLLFYCFRKKKDKPAASQPSLETSFP 695

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581223|ref|XP_002531424.1| receptor-kinase, putative [Ricinus communis] gi|223528974|gb|EEF30966.1| receptor-kinase, putative [Ricinus communis]

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 96/224 (42%), Positives = 138/224 (61%), Gaps = 13/224 (5%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P SL  C+NL++L   KN LSG++P Q+  + + S+ LDL  N  +G  P EVGNLK L 
Sbjct: 458 PSSLAECENLMVLDLAKNNLSGSIPLQVFGLSSLSIALDLSANHFTGVIPMEVGNLKDLE 517

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            L IS NM SG IP +LG C  LE L++Q N F G +PS+LSSL+ +  LD S NNLSG 
Sbjct: 518 QLGISDNMLSGRIPDSLGSCIKLEVLALQGNFFDGLVPSSLSSLRGLRVLDFSSNNLSGE 577

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG-----------S 171
           IP++L++   L  LNLSYN+FEG+VP+E IF +     ++GN+ LCGG            
Sbjct: 578 IPEFLQSFDLLESLNLSYNNFEGRVPVEGIFRNASTTLVMGNDKLCGGIPEFHLAKCNAK 637

Query: 172 RKSKFSILIKVVIQVI--VLCLILVVFFIVVYGRRRRSTQKSSN 213
              K ++L+K+VI  I  +L L  ++ F + +  R++  + +S+
Sbjct: 638 SPKKLTLLLKIVISTICSLLGLSFILIFALTFWLRKKKEEPTSD 681

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357497597|ref|XP_003619087.1| Receptor-like protein kinase [Medicago truncatula] gi|355494102|gb|AES75305.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  179 bits (454), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 97/233 (41%), Positives = 145/233 (62%), Gaps = 18/233 (7%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           PPS+GNC +L  L    NKL GT+P ++L + + S+LL+L  N LSG  P EVG LK++ 
Sbjct: 431 PPSIGNCLHLQYLDLSHNKLRGTIPAEVLNLFSLSMLLNLSHNSLSGTLPREVGMLKNIK 490

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            LD+S N  SG+IP  +G CTS+E++ +Q NSF G+IPS+L+SLK +  LD SRN LSG 
Sbjct: 491 GLDVSGNHLSGDIPIEIGECTSIEYILLQRNSFNGTIPSSLASLKGLQYLDFSRNQLSGS 550

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG------------ 170
           IP  ++N+SFL + N+S+N  EG+VP   +F +   I ++GN+ LCGG            
Sbjct: 551 IPDGMQNISFLEYFNVSFNMLEGEVPTNGVFGNATQIEVIGNKKLCGGISHLHLPPCPIK 610

Query: 171 ----SRKSKFSILIKVVIQVIVLCLILVVFFIVVYGRRRRSTQKSSNKLSMEQ 219
                ++ KF  LI V++ V+   LIL  F I +Y   + + ++S +  +++Q
Sbjct: 611 GRKHVKQHKFR-LIAVIVSVVSFILIL-SFIITIYMMSKINQKRSFDSPAIDQ 661

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.757	0.163	0.432	2.5e-32
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.766	0.169	0.398	8.9e-30
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.744	0.164	0.404	1.1e-29
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.744	0.161	0.428	1.5e-29
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.766	0.169	0.398	1.9e-29
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.753	0.163	0.422	5.1e-29
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.753	0.206	0.375	1.9e-25
TAIR|locus:2047525	980	AT2G24130 [Arabidopsis thalian	0.748	0.170	0.363	4.3e-22
TAIR|locus:2124147	431	RLP51 "receptor like protein 5	0.717	0.371	0.347	6.3e-22
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.650	0.127	0.369	1.1e-21

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 2.5e-32, P = 2.5e-32
 Identities = 74/171 (43%), Positives = 105/171 (61%)

Query:     3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             P SLG C+ L+ L    N+L+GT+P+++L+I + + + DL +N L+GHFP EVG L+ LV
Sbjct:   458 PQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAYI-DLSNNFLTGHFPEEVGKLELLV 516

Query:    63 SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
              L  S N  SG++P  +GGC S+E L MQ NSF G+IP  +S L S+  +D S NNLSG 
Sbjct:   517 GLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIPD-ISRLVSLKNVDFSNNNLSGR 575

Query:   123 IPQYXXXXXXXXXXXXXXXXXEGKVPIEAIFNSTKGISLVGNENLCGGSRK 173
             IP+Y                 EG+VP   +F +   +S+ GN N+CGG R+
Sbjct:   576 IPRYLASLPSLRNLNLSMNKFEGRVPTTGVFRNATAVSVFGNTNICGGVRE 626

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 8.9e-30, P = 8.9e-30
 Identities = 69/173 (39%), Positives = 105/173 (60%)

Query:     3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             PPSLG C +++ L    NKL+GT+P+++++I T  V L +  N LSG  P ++G+L++LV
Sbjct:   451 PPSLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTL-VNLSMEGNSLSGSLPNDIGSLQNLV 509

Query:    63 SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
              L + +N FSG +P TLG C ++E L +Q NSF G+IP+ +  L  +  +DLS N+LSG 
Sbjct:   510 KLSLENNKFSGHLPQTLGNCLAMEQLFLQGNSFDGAIPN-IRGLMGVRRVDLSNNDLSGS 568

Query:   123 IPQYXXXXXXXXXXXXXXXXXEGKVPIEAIFNSTKGISLVGNENLCGGSRKSK 175
             IP+Y                  GKVP +  F ++  + + GN+NLCGG +  K
Sbjct:   569 IPEYFANFSKLEYLNLSINNFTGKVPSKGNFQNSTIVFVFGNKNLCGGIKDLK 621

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 1.1e-29, P = 1.1e-29
 Identities = 68/168 (40%), Positives = 101/168 (60%)

Query:     3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             P SLGNC +L+ L    NKL+GT+P ++++I  + + LD+  N L G  P ++G L++L 
Sbjct:   450 PTSLGNCSHLLELWIGDNKLNGTIPLEIMKI-QQLLRLDMSGNSLIGSLPQDIGALQNLG 508

Query:    63 SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
             +L +  N  SG++P TLG C ++E L ++ N F G IP  L  L  + E+DLS N+LSG 
Sbjct:   509 TLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPD-LKGLVGVKEVDLSNNDLSGS 567

Query:   123 IPQYXXXXXXXXXXXXXXXXXEGKVPIEAIFNSTKGISLVGNENLCGG 170
             IP+Y                 EGKVP++ IF +   +S+VGN +LCGG
Sbjct:   568 IPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCGG 615

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 1.5e-29, P = 1.5e-29
 Identities = 72/168 (42%), Positives = 100/168 (59%)

Query:     3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             P SLG+C  L+ L    NKL+G++P +L+ + +  V+L++  NLL G    ++G LK L+
Sbjct:   466 PSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSL-VVLNVSFNLLVGPLRQDIGKLKFLL 524

Query:    63 SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
             +LD+S N  SG+IP TL  C SLE L +Q NSF G IP  +  L  +  LDLS+NNLSG 
Sbjct:   525 ALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPD-IRGLTGLRFLDLSKNNLSGT 583

Query:   123 IPQYXXXXXXXXXXXXXXXXXEGKVPIEAIFNSTKGISLVGNENLCGG 170
             IP+Y                 +G VP E +F +T  +S+ GN NLCGG
Sbjct:   584 IPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLCGG 631

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.9e-29, P = 1.9e-29
 Identities = 69/173 (39%), Positives = 105/173 (60%)

Query:     3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             PPSLG+C +++ L    NKL+GT+P+++++I T  V L++  N LSG  P ++G L++LV
Sbjct:   451 PPSLGDCSHMLDLQIGYNKLNGTIPKEIMQIPTL-VHLNMESNSLSGSLPNDIGRLQNLV 509

Query:    63 SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
              L + +N  SG +P TLG C S+E + +Q+N F G+IP  +  L  +  +DLS NNLSG 
Sbjct:   510 ELLLGNNNLSGHLPQTLGKCLSMEVIYLQENHFDGTIPD-IKGLMGVKNVDLSNNNLSGS 568

Query:   123 IPQYXXXXXXXXXXXXXXXXXEGKVPIEAIFNSTKGISLVGNENLCGGSRKSK 175
             I +Y                 EG+VP E IF +   +S+ GN+NLCG  ++ K
Sbjct:   569 ISEYFENFSKLEYLNLSDNNFEGRVPTEGIFQNATLVSVFGNKNLCGSIKELK 621

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 334 (122.6 bits), Expect = 5.1e-29, P = 5.1e-29
 Identities = 71/168 (42%), Positives = 92/168 (54%)

Query:     3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             P +L N  NL+ L    N LSG +P +L  I T S+++++  N L G  P E+G+LK+LV
Sbjct:   465 PYTLSNLTNLLSLGLSTNNLSGPIPSELFNIQTLSIMINVSKNNLEGSIPQEIGHLKNLV 524

Query:    63 SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
                  SN  SG+IP TLG C  L +L +Q+N  +GSIPS L  LK +  LDLS NNLSG 
Sbjct:   525 EFHAESNRLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPSALGQLKGLETLDLSSNNLSGQ 584

Query:   123 IPQYXXXXXXXXXXXXXXXXXEGKVPIEAIFNSTKGISLVGNENLCGG 170
             IP                    G+VP    F +  GIS+ GN  LCGG
Sbjct:   585 IPTSLADITMLHSLNLSFNSFVGEVPTIGAFAAASGISIQGNAKLCGG 632

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 299 (110.3 bits), Expect = 1.9e-25, P = 1.9e-25
 Identities = 63/168 (37%), Positives = 86/168 (51%)

Query:     3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             P +LGN   L  +    N   G +P ++  I   S +LD+  N L G  P E+G LK++V
Sbjct:   439 PSTLGNLTKLFQINLGHNNFIGQIPIEIFSIPALSEILDVSHNNLEGSIPKEIGKLKNIV 498

Query:    63 SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
                  SN  SGE P+T+G C  L+HL +Q+N   GSIP  L+ LK +  LDLS NNLSG 
Sbjct:   499 EFHADSNKLSGENPSTIGECQLLQHLFLQNNFLNGSIPIALTQLKGLDTLDLSGNNLSGQ 558

Query:   123 IPQYXXXXXXXXXXXXXXXXXEGKVPIEAIFNSTKGISLVGNENLCGG 170
             IP                    G+VP   +F +   I + GN ++CGG
Sbjct:   559 IPMSLGDMPLLHSLNLSFNSFHGEVPTNGVFANASEIYIQGNAHICGG 606

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 61/168 (36%), Positives = 90/168 (53%)

Query:     3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVL-LDLFDNLLSGHFPAEVGNLKHL 61
             P SLG C NL +L    N L+GT+P +++  +    L L+L  N LSG  P E+  +  +
Sbjct:   410 PQSLGKCINLEILDLSHNNLTGTIPVEVVSNLRNLKLYLNLSSNHLSGPIPLELSKMDMV 469

Query:    62 VSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 121
             +S+D+SSN  SG+IP  LG C +LEHL++  N F+ ++PS+L  L  + ELD+S N L+G
Sbjct:   470 LSVDLSSNELSGKIPPQLGSCIALEHLNLSRNGFSSTLPSSLGQLPYLKELDVSFNRLTG 529

Query:   122 HIPQYXXXXXXXXXXXXXXXXXEGKVPIEAIFNSTKGISLVGNENLCG 169
              IP                    G V  +  F+     S +G+  LCG
Sbjct:   530 AIPPSFQQSSTLKHLNFSFNLLSGNVSDKGSFSKLTIESFLGDSLLCG 577

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2124147 RLP51 "receptor like protein 51" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 6.3e-22, P = 6.3e-22
 Identities = 57/164 (34%), Positives = 86/164 (52%)

Query:     6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLD 65
             LGN   ++ LT     LSG +P+     +T    +DL DNLL G  P  +  L +L SL+
Sbjct:   186 LGNMHEIVSLTISHANLSGNIPKSFHSNLT---FIDLSDNLLKGSIPTSITLLSNLKSLN 242

Query:    66 ISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ 125
             +S N  SG+IP ++G   SL++LS+  N  +G IP ++SS+  +T LDLS N L+G IP+
Sbjct:   243 LSKNTISGDIPDSIGDLISLKNLSLSSNKLSGPIPDSISSIPELTHLDLSGNQLNGTIPR 302

Query:   126 YXXXXXXXXXXXXXXXXXEGKVPIEAIF-NSTKGISLVGNENLC 168
             +                  G +P  A F  + +   + GN +LC
Sbjct:   303 FISKMKYLTHLNLANNAFHGVLPFNASFIKNLEVFKIGGNSDLC 346

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 54/146 (36%), Positives = 83/146 (56%)

Query:     3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             P  LGNC  L+ L   +N LSG++PR++ ++ T+   L L+ N L G  P E+GN  +L 
Sbjct:   267 PSDLGNCSELVDLFLYENSLSGSIPREIGQL-TKLEQLFLWQNSLVGGIPEEIGNCSNLK 325

Query:    63 SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
              +D+S N+ SG IP+++G  + LE   + DN F+GSIP+T+S+  S+ +L L +N +SG 
Sbjct:   326 MIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGL 385

Query:   123 IPQYXXXXXXXXXXXXXXXXXEGKVP 148
             IP                   EG +P
Sbjct:   386 IPSELGTLTKLTLFFAWSNQLEGSIP 411

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XI.617.1 hypothetical protein (973 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-29
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-26
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-23
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-14
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  113 bits (284), Expect = 7e-29
 Identities = 67/209 (32%), Positives = 104/209 (49%), Gaps = 14/209 (6%)

Query: 12  LILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMF 71
           L +L+  +NK  G +P        R   LDL  N  SG  P ++G+L  L+ L +S N  
Sbjct: 454 LQMLSLARNKFFGGLPDSFGS--KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511

Query: 72  SGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLS 131
           SGEIP  L  C  L  L +  N  +G IP++ S +  +++LDLS+N LSG IP+ L N+ 
Sbjct: 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE 571

Query: 132 FLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGGS-----------RKSKFSILI 180
            L  +N+S+NH  G +P    F +    ++ GN +LCGG            RK+      
Sbjct: 572 SLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFY 631

Query: 181 KVVIQVIVLCLILVVFFIVVYGRRRRSTQ 209
            +   +    ++ +V F  V+ R R + +
Sbjct: 632 -ITCTLGAFLVLALVAFGFVFIRGRNNLE 659

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  104 bits (261), Expect = 9e-26
 Identities = 59/148 (39%), Positives = 89/148 (60%), Gaps = 3/148 (2%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSV-LLDLFDNLLSGHFPAEVGNLKHL 61
           P SL N  +L  LT   N+L G +PR+L ++  +S+  + L  N LSG  P E+G L  L
Sbjct: 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQM--KSLKWIYLGYNNLSGEIPYEIGGLTSL 238

Query: 62  VSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 121
             LD+  N  +G IP++LG   +L++L +  N  +G IP ++ SL+ +  LDLS N+LSG
Sbjct: 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298

Query: 122 HIPQYLENLSFLSFLNLSYNHFEGKVPI 149
            IP+ +  L  L  L+L  N+F GK+P+
Sbjct: 299 EIPELVIQLQNLEILHLFSNNFTGKIPV 326

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 95.7 bits (238), Expect = 8e-23
 Identities = 61/146 (41%), Positives = 83/146 (56%), Gaps = 1/146 (0%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P SLGN +NL  L   +NKLSG +P  +  +  + + LDL DN LSG  P  V  L++L 
Sbjct: 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL-QKLISLDLSDNSLSGEIPELVIQLQNLE 311

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            L + SN F+G+IP  L     L+ L +  N F+G IP  L    ++T LDLS NNL+G 
Sbjct: 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVP 148
           IP+ L +   L  L L  N  EG++P
Sbjct: 372 IPEGLCSSGNLFKLILFSNSLEGEIP 397

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 94.9 bits (236), Expect = 2e-22
 Identities = 61/168 (36%), Positives = 85/168 (50%), Gaps = 2/168 (1%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
               G+  NL  L    N LSG +P  +    +   +LDL  N+L G  P  + NL  L 
Sbjct: 133 SIPRGSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            L ++SN   G+IP  LG   SL+ + +  N+ +G IP  +  L S+  LDL  NNL+G 
Sbjct: 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG 170
           IP  L NL  L +L L  N   G +P  +IF+  K ISL  ++N   G
Sbjct: 252 IPSSLGNLKNLQYLFLYQNKLSGPIP-PSIFSLQKLISLDLSDNSLSG 298

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 92.6 bits (230), Expect = 9e-22
 Identities = 51/140 (36%), Positives = 77/140 (55%), Gaps = 3/140 (2%)

Query: 9   CQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISS 68
             +L  L    N  +G++PR  +  +     LDL +N+LSG  P ++G+   L  LD+  
Sbjct: 117 SSSLRYLNLSNNNFTGSIPRGSIPNLET---LDLSNNMLSGEIPNDIGSFSSLKVLDLGG 173

Query: 69  NMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLE 128
           N+  G+IP +L   TSLE L++  N   G IP  L  +KS+  + L  NNLSG IP  + 
Sbjct: 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG 233

Query: 129 NLSFLSFLNLSYNHFEGKVP 148
            L+ L+ L+L YN+  G +P
Sbjct: 234 GLTSLNHLDLVYNNLTGPIP 253

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 89.5 bits (222), Expect = 1e-20
 Identities = 55/146 (37%), Positives = 80/146 (54%), Gaps = 1/146 (0%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P +L +   L +L    NK SG +P+ L +    +VL DL  N L+G  P  + +  +L 
Sbjct: 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL-DLSTNNLTGEIPEGLCSSGNLF 383

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            L + SN   GEIP +LG C SL  + +QDNSF+G +PS  + L  +  LD+S NNL G 
Sbjct: 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVP 148
           I     ++  L  L+L+ N F G +P
Sbjct: 444 INSRKWDMPSLQMLSLARNKFFGGLP 469

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 88.0 bits (218), Expect = 4e-20
 Identities = 55/146 (37%), Positives = 79/146 (54%), Gaps = 1/146 (0%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P  +G   +L  L    N L+G +P  L  +     L  L+ N LSG  P  + +L+ L+
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF-LYQNKLSGPIPPSIFSLQKLI 287

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
           SLD+S N  SGEIP  +    +LE L +  N+FTG IP  L+SL  +  L L  N  SG 
Sbjct: 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVP 148
           IP+ L   + L+ L+LS N+  G++P
Sbjct: 348 IPKNLGKHNNLTVLDLSTNNLTGEIP 373

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 87.6 bits (217), Expect = 6e-20
 Identities = 55/148 (37%), Positives = 78/148 (52%), Gaps = 1/148 (0%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           PPS+ + Q LI L    N LSG +P  ++++    +L  LF N  +G  P  + +L  L 
Sbjct: 277 PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL-HLFSNNFTGKIPVALTSLPRLQ 335

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            L + SN FSGEIP  LG   +L  L +  N+ TG IP  L S  ++ +L L  N+L G 
Sbjct: 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIE 150
           IP+ L     L  + L  N F G++P E
Sbjct: 396 IPKSLGACRSLRRVRLQDNSFSGELPSE 423

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 81.0 bits (200), Expect = 1e-17
 Identities = 48/131 (36%), Positives = 78/131 (59%), Gaps = 2/131 (1%)

Query: 20  NKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTL 79
           N+LSG +P  +    +    L+L +N  +G  P   G++ +L +LD+S+NM SGEIP  +
Sbjct: 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI 160

Query: 80  GGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLS 139
           G  +SL+ L +  N   G IP++L++L S+  L L+ N L G IP+ L  +  L ++ L 
Sbjct: 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220

Query: 140 YNHFEGKVPIE 150
           YN+  G++P E
Sbjct: 221 YNNLSGEIPYE 231

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 79.1 bits (195), Expect = 4e-17
 Identities = 57/168 (33%), Positives = 77/168 (45%), Gaps = 22/168 (13%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           L L +  L G  P ++  L+HL S+++S N   G IP +LG  TSLE L +  NSF GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 100 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKG 158
           P +L  L S+  L+L+ N+LSG +P  L                 G   +  A FN T  
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL-----------------GGRLLHRASFNFTDN 525

Query: 159 ISLVGNENL--CGGSRKSKFSILIKVVIQVIVLCLILVVFFIVVYGRR 204
             L G   L  CG          I +   V V  L LV+  +  + RR
Sbjct: 526 AGLCGIPGLRACGPHLSV--GAKIGIAFGVSVAFLFLVICAMCWWKRR 571

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.4 bits (175), Expect = 2e-14
 Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 3/117 (2%)

Query: 34  ITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTL-GGCTSLEHLSMQD 92
            +R V +DL    +SG   + +  L ++ ++++S+N  SG IP  +    +SL +L++ +
Sbjct: 68  SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127

Query: 93  NSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI 149
           N+FTGSIP    S+ ++  LDLS N LSG IP  + + S L  L+L  N   GK+P 
Sbjct: 128 NNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 5e-05
 Identities = 22/60 (36%), Positives = 31/60 (51%)

Query: 60  HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNL 119
           +L SLD+S+N  +        G  +L+ L +  N+ T   P   S L S+  LDLS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 4   PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVS 63
             L + Q++ L     N + G +P  L   IT   +LDL  N  +G  P  +G L  L  
Sbjct: 439 SKLRHLQSINLSG---NSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494

Query: 64  LDISSNMFSGEIPTTLGG 81
           L+++ N  SG +P  LGG
Sbjct: 495 LNLNGNSLSGRVPAALGG 512

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 84  SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 143
           +L+ L + +N  T         L ++  LDLS NNL+   P+    L  L  L+LS N+ 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 4/127 (3%)

Query: 39  LLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGS 98
            LDL DN +    P+ + NL +L +LD+S N  S ++P  L   ++L +L +  N  +  
Sbjct: 144 ELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-D 200

Query: 99  IPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKG 158
           +P  +  L ++ ELDLS N++   +   L NL  LS L LS N  E         ++ + 
Sbjct: 201 LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLET 259

Query: 159 ISLVGNE 165
           + L  N+
Sbjct: 260 LDLSNNQ 266

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGN-LKHL 61
           PPSLG+  +L +L    N  +G++P  L + +T   +L+L  N LSG  PA +G  L H 
Sbjct: 459 PPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNSLSGRVPAALGGRLLHR 517

Query: 62  VSLDISSN 69
            S + + N
Sbjct: 518 ASFNFTDN 525

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 13/97 (13%)

Query: 61  LVSLDISSNMFSGE-IPTTLGG---CTSLEHLSMQDNSFT----GSIPSTLSSLKSITEL 112
           L  L++++N      I     G     +LE L + +N  T     ++  TL+SLKS+  L
Sbjct: 167 LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL 226

Query: 113 DLSRNNLSGHI-----PQYLENLSFLSFLNLSYNHFE 144
           +L  NNL+           L     L  L+LS N   
Sbjct: 227 NLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.87
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.82
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.78
PLN03150	623	hypothetical protein; Provisional	99.77
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.75
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.73
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
PLN03150	623	hypothetical protein; Provisional	99.65
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.58
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.58
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.57
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.57
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.49
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.45
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.41
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.38
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.37
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.35
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.34
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.34
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.33
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.32
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.29
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.29
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.27
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.26
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.25
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.25
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.23
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.06
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.06
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.01
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.97
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.87
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.74
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.69
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.62
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.55
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.51
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.51
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.48
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.44
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.42
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.41
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.37
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.28
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.22
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.2
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.19
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.98
PRK15386	426	type III secretion protein GogB; Provisional	97.96
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.81
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.69
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.55
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.5
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.45
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.36
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.33
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.29
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.24
PRK15386	426	type III secretion protein GogB; Provisional	97.17
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.94
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.9
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.46
smart00370	26	LRR Leucine-rich repeats, outliers.	96.36
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.36
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.26
PF15102	146	TMEM154: TMEM154 protein family	95.86
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.63
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.48
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.37
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.17
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	95.14
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	95.1
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	94.93
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.58
smart00370	26	LRR Leucine-rich repeats, outliers.	94.58
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	94.18
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	94.02
TIGR01478	295	STEVOR variant surface antigen, stevor family. Thi	94.0
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	93.62
PTZ00370	296	STEVOR; Provisional	93.1
PF02009	299	Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00	92.9
PF05454	290	DAG1: Dystroglycan (Dystrophin-associated glycopro	92.05
PF05393	94	Hum_adeno_E3A: Human adenovirus early E3A glycopro	91.74
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.59
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	91.31
PF01299	306	Lamp: Lysosome-associated membrane glycoprotein (L	91.16
PTZ00046	358	rifin; Provisional	89.78
TIGR01477	353	RIFIN variant surface antigen, rifin family. This	89.61
PF14991	118	MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P	88.96
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	88.86
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.66
PF15330	107	SIT: SHP2-interacting transmembrane adaptor protei	87.72
PF15050	133	SCIMP: SCIMP protein	87.37
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	87.31
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	87.0
KOG1947	482	consensus Leucine rich repeat proteins, some prote	86.38
KOG4308	478	consensus LRR-containing protein [Function unknown	85.68
PF05961	68	Chordopox_A13L: Chordopoxvirus A13L protein; Inter	85.66
PHA03265	402	envelope glycoprotein D; Provisional	84.99
KOG1947	482	consensus Leucine rich repeat proteins, some prote	84.66
KOG4308	478	consensus LRR-containing protein [Function unknown	83.91
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	82.99
PF12768	281	Rax2: Cortical protein marker for cell polarity	82.78
KOG3864	221	consensus Uncharacterized conserved protein [Funct	82.34
PF14575	75	EphA2_TM: Ephrin type-A receptor 2 transmembrane d	81.92
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	81.51
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	81.07
PHA03049	68	IMV membrane protein; Provisional	81.06
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	81.05

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=7.6e-26  Score=208.93  Aligned_cols=162  Identities=37%  Similarity=0.641  Sum_probs=132.6

Q ss_pred             CCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCc
Q 048080            7 GNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLE   86 (223)
Q Consensus         7 ~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~   86 (223)
                      ..+++|+.|++++|++.+.+|...  ....|+.|++++|.+++..|..|..+++|+.|++++|.+.+..|+.+..+++|+
T Consensus       449 ~~l~~L~~L~L~~n~~~~~~p~~~--~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  526 (968)
T PLN00113        449 WDMPSLQMLSLARNKFFGGLPDSF--GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLV  526 (968)
T ss_pred             ccCCCCcEEECcCceeeeecCccc--ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCC
Confidence            334444444444444444444322  224567888888888888888888899999999999999999999999999999


Q ss_pred             EEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCCC
Q 048080           87 HLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNEN  166 (223)
Q Consensus        87 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~~  166 (223)
                      .|++++|.+++.+|..|..+++|+.|+|++|++++.+|..+..+++|+.+++++|++.+.+|....+..+....+.+|+.
T Consensus       527 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~  606 (968)
T PLN00113        527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNID  606 (968)
T ss_pred             EEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999777777777778889999


Q ss_pred             CCCC
Q 048080          167 LCGG  170 (223)
Q Consensus       167 ~C~~  170 (223)
                      .|+.
T Consensus       607 lc~~  610 (968)
T PLN00113        607 LCGG  610 (968)
T ss_pred             ccCC
Confidence            9974

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.87  E-value=1.3e-21  Score=180.89  Aligned_cols=165  Identities=32%  Similarity=0.498  Sum_probs=125.7

Q ss_pred             CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCC
Q 048080            3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC   82 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l   82 (223)
                      |+.|.++++|+.|++++|.+.+.+|... ...+.|+.|++++|.+.+..|..+ .+++|+.|++++|.+++..|..|..+
T Consensus       421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l  498 (968)
T PLN00113        421 PSEFTKLPLVYFLDISNNNLQGRINSRK-WDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL  498 (968)
T ss_pred             ChhHhcCCCCCEEECcCCcccCccChhh-ccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh
Confidence            4444444555555555555544333322 233445666666666665555544 34677888888888888888888999


Q ss_pred             CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCcceee
Q 048080           83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGISL  161 (223)
Q Consensus        83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l~~  161 (223)
                      ++|+.|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|.. .....+..+++
T Consensus       499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l  578 (968)
T PLN00113        499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI  578 (968)
T ss_pred             hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999988854 44667888999


Q ss_pred             cCCCCCCC
Q 048080          162 VGNENLCG  169 (223)
Q Consensus       162 ~~n~~~C~  169 (223)
                      ++|+..+.
T Consensus       579 s~N~l~~~  586 (968)
T PLN00113        579 SHNHLHGS  586 (968)
T ss_pred             cCCcceee
Confidence            99987653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.82  E-value=2.1e-22  Score=168.42  Aligned_cols=169  Identities=21%  Similarity=0.193  Sum_probs=125.8

Q ss_pred             CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCC
Q 048080            5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTS   84 (223)
Q Consensus         5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   84 (223)
                      ++.+++.|+.|++++|.|. .+..+.+...+.|++|+|++|.|+...+..|..+..|++|+|++|.++.+....|.++++
T Consensus       288 ~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lss  366 (873)
T KOG4194|consen  288 WLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSS  366 (873)
T ss_pred             cccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhh
Confidence            4566777777777777777 666666677777777888888777777777777777888888888777777777888888


Q ss_pred             CcEEEcccCcccccCCc---cccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceee
Q 048080           85 LEHLSMQDNSFTGSIPS---TLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISL  161 (223)
Q Consensus        85 L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~  161 (223)
                      |+.|||++|.+++.+.+   .|.+|++|+.|++.+|++..+...+|.+++.|+.||+.+|.+...-+.....-.++.+.+
T Consensus       367 L~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~  446 (873)
T KOG4194|consen  367 LHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVM  446 (873)
T ss_pred             hhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhh
Confidence            88888888888776654   467788888888888888866667888888888888888888765554422235666777


Q ss_pred             cCCCCCCCCCCCC
Q 048080          162 VGNENLCGGSRKS  174 (223)
Q Consensus       162 ~~n~~~C~~~~~~  174 (223)
                      .....+|||.-++
T Consensus       447 nSssflCDCql~W  459 (873)
T KOG4194|consen  447 NSSSFLCDCQLKW  459 (873)
T ss_pred             cccceEEeccHHH
Confidence            7777889995443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.78  E-value=2.7e-20  Score=149.42  Aligned_cols=94  Identities=22%  Similarity=0.231  Sum_probs=84.0

Q ss_pred             ccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCc
Q 048080           79 LGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTK  157 (223)
Q Consensus        79 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~  157 (223)
                      |..|++|+.|+|++|+++.+-+.+|.++..++.|.|..|++.......|.++..|++|++.+|++++..|.. .....+.
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            555899999999999999999999999999999999999999888889999999999999999999877743 4556778


Q ss_pred             ceeecCCCCCCCCCC
Q 048080          158 GISLVGNENLCGGSR  172 (223)
Q Consensus       158 ~l~~~~n~~~C~~~~  172 (223)
                      .+.+.+|||.|+|.-
T Consensus       350 ~l~l~~Np~~CnC~l  364 (498)
T KOG4237|consen  350 TLNLLSNPFNCNCRL  364 (498)
T ss_pred             eeehccCcccCccch
Confidence            899999999999943

>PLN03150 hypothetical protein; Provisional

Probab=99.77  E-value=2.8e-18  Score=151.21  Aligned_cols=111  Identities=32%  Similarity=0.542  Sum_probs=91.7

Q ss_pred             CCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccC
Q 048080           61 LVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSY  140 (223)
Q Consensus        61 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~  140 (223)
                      ++.|+|++|.+.+..|..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            67788888888888888888888899999999988888888888888899999999999888888888888899999999


Q ss_pred             CcCcccCCchh--hhcCCcceeecCCCCCCCCC
Q 048080          141 NHFEGKVPIEA--IFNSTKGISLVGNENLCGGS  171 (223)
Q Consensus       141 N~l~~~~~~~~--~~~~l~~l~~~~n~~~C~~~  171 (223)
                      |.++|.+|..-  .......+++.+|+..|+.+
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCC
Confidence            98888887542  12334567888888888753

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.75  E-value=2e-20  Score=135.10  Aligned_cols=143  Identities=24%  Similarity=0.405  Sum_probs=110.7

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccc-cCCcccc
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSG-EIPTTLG   80 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~   80 (223)
                      +|+.++++.+|+.|++.+|+|. ++|.++.+. +.|+.|+++-|.+. ..|..|+.++.|+.||+++|++.. ..|+.|.
T Consensus        48 vppnia~l~nlevln~~nnqie-~lp~~issl-~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff  124 (264)
T KOG0617|consen   48 VPPNIAELKNLEVLNLSNNQIE-ELPTSISSL-PKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFF  124 (264)
T ss_pred             cCCcHHHhhhhhhhhcccchhh-hcChhhhhc-hhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchh
Confidence            6777788888888888888887 777776554 44477888878777 777778888888888888877753 4677777


Q ss_pred             CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc
Q 048080           81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI  149 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~  149 (223)
                      .+..|+.|+|++|.+. .+|...+.+++|+.|.+++|.+- ..|..++.+..|+.|.+.+|.++-..|.
T Consensus       125 ~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  125 YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh
Confidence            7778888888888877 66767888888888888888887 6788888888888888888888855443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.73  E-value=1.3e-18  Score=145.94  Aligned_cols=141  Identities=23%  Similarity=0.237  Sum_probs=83.1

Q ss_pred             CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCC
Q 048080            5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTS   84 (223)
Q Consensus         5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   84 (223)
                      .|.++.+|..|.|+.|+++ .+|...|+.++.|+.|+|..|.|.-...-.|.++++|+.|.|..|.+.....+.|.+|.+
T Consensus       192 ~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~k  270 (873)
T KOG4194|consen  192 HFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEK  270 (873)
T ss_pred             cccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecc
Confidence            3445555555555555555 555555555555555555555555333344555555555555555555444555666666


Q ss_pred             CcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCccc
Q 048080           85 LEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGK  146 (223)
Q Consensus        85 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~  146 (223)
                      +++|+|+.|+++..-.+.+.++++|++|+|+.|.+..+.++.+...++|+.|++++|.++..
T Consensus       271 me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l  332 (873)
T KOG4194|consen  271 MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL  332 (873)
T ss_pred             cceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence            66666666666655555566666666667777766666666666667777777777766643

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.69  E-value=3.7e-18  Score=144.61  Aligned_cols=161  Identities=27%  Similarity=0.375  Sum_probs=133.6

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG   81 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   81 (223)
                      ||+.+..|..|+.||+++|+++ ++|..+-..... ..|+|++|+|..++..-|.+++.|-.|||++|++. ..|.....
T Consensus        95 iP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~-iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR  171 (1255)
T KOG0444|consen   95 IPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNS-IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR  171 (1255)
T ss_pred             CCchhcccccceeeecchhhhh-hcchhhhhhcCc-EEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHH
Confidence            7999999999999999999998 999987655444 78999999999666667788999999999999998 56667788


Q ss_pred             CCCCcEEEcccCcccc-------------------------cCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEE
Q 048080           82 CTSLEHLSMQDNSFTG-------------------------SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFL  136 (223)
Q Consensus        82 l~~L~~L~L~~N~l~~-------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l  136 (223)
                      +..|++|+|++|.+..                         -+|.++..+.+|..+|+++|.+. ..|+.+..+++|+.|
T Consensus       172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrL  250 (1255)
T KOG0444|consen  172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRL  250 (1255)
T ss_pred             HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhhee
Confidence            8888889998886642                         24566677778889999999998 889999999999999


Q ss_pred             eccCCcCcccCCchhhhcCCcceeecCCCC
Q 048080          137 NLSYNHFEGKVPIEAIFNSTKGISLVGNEN  166 (223)
Q Consensus       137 ~l~~N~l~~~~~~~~~~~~l~~l~~~~n~~  166 (223)
                      ++++|+++..--....+..+.+++++.|..
T Consensus       251 NLS~N~iteL~~~~~~W~~lEtLNlSrNQL  280 (1255)
T KOG0444|consen  251 NLSGNKITELNMTEGEWENLETLNLSRNQL  280 (1255)
T ss_pred             ccCcCceeeeeccHHHHhhhhhhccccchh
Confidence            999999986555556677788888887754

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=9.9e-19  Score=126.41  Aligned_cols=156  Identities=24%  Similarity=0.370  Sum_probs=133.4

Q ss_pred             CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCC
Q 048080            6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSL   85 (223)
Q Consensus         6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   85 (223)
                      +.++++.+.|.+++|+++ .+|+.+.... +|+.|++.+|++. ..|..++.|++|+.|+++.|++. +.|..|+.++.|
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~-nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELK-NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhh-hhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            346778889999999999 8998886654 4599999999999 78889999999999999999998 889999999999


Q ss_pred             cEEEcccCcccc-cCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCC
Q 048080           86 EHLSMQDNSFTG-SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN  164 (223)
Q Consensus        86 ~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n  164 (223)
                      +.|||++|++.. ..|+.|..++.|+.|+|++|.+. .+|..++.+.+|+.|.+.+|.+-...........++.+.+.||
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence            999999999873 67888999999999999999999 8888899999999999999998744333355555666666666


Q ss_pred             CC
Q 048080          165 EN  166 (223)
Q Consensus       165 ~~  166 (223)
                      ..
T Consensus       184 rl  185 (264)
T KOG0617|consen  184 RL  185 (264)
T ss_pred             ee
Confidence            43

>PLN03150 hypothetical protein; Provisional

Probab=99.65  E-value=1e-15  Score=135.00  Aligned_cols=112  Identities=38%  Similarity=0.544  Sum_probs=104.4

Q ss_pred             ceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCC
Q 048080           37 SVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR  116 (223)
Q Consensus        37 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  116 (223)
                      ++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.++.+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccchhhhCC-CCCCEEeccCCcCcccCC
Q 048080          117 NNLSGHIPQYLENL-SFLSFLNLSYNHFEGKVP  148 (223)
Q Consensus       117 N~l~~~~p~~~~~l-~~L~~l~l~~N~l~~~~~  148 (223)
                      |.++|.+|..+... .++..+++.+|+..|..|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCC
Confidence            99999999988764 467889999998877554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.58  E-value=1.3e-16  Score=139.80  Aligned_cols=162  Identities=28%  Similarity=0.354  Sum_probs=120.3

Q ss_pred             CCCCCCCCCCCCCeeecccCccccCCChhhhhccC-------------------------CceEEEccCCcccccCCcCC
Q 048080            1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIIT-------------------------RSVLLDLFDNLLSGHFPAEV   55 (223)
Q Consensus         1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~-------------------------~l~~L~L~~n~l~~~~~~~~   55 (223)
                      .||+...+++.|+.|++..|.+. .+|+..+.-..                         .|+.|++.+|.++...-..+
T Consensus       301 yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l  379 (1081)
T KOG0618|consen  301 YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL  379 (1081)
T ss_pred             hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh
Confidence            37888888999999999999998 88876554333                         24455666666665555666


Q ss_pred             CCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCE
Q 048080           56 GNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSF  135 (223)
Q Consensus        56 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  135 (223)
                      .++++|+.|+|++|++.......+..++.|+.|+||+|+++ .+|++...+..|++|...+|++. ..| .+..++.|+.
T Consensus       380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~  456 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV  456 (1081)
T ss_pred             ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence            77788888888888887554556777888888888888888 66677777777777777777777 556 6788888889


Q ss_pred             EeccCCcCcccC-CchhhhcCCcceeecCCCC
Q 048080          136 LNLSYNHFEGKV-PIEAIFNSTKGISLVGNEN  166 (223)
Q Consensus       136 l~l~~N~l~~~~-~~~~~~~~l~~l~~~~n~~  166 (223)
                      +|++.|.++... +....++.++.++++||.+
T Consensus       457 lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  457 LDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             EecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            999988887533 3223337888899999886

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.58  E-value=7.2e-17  Score=136.95  Aligned_cols=166  Identities=25%  Similarity=0.305  Sum_probs=142.8

Q ss_pred             CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080            1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG   80 (223)
Q Consensus         1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   80 (223)
                      .||.++..|.+|..+|++.|.+. .+|+.++...+ |+.|+|++|.|+ .+.-......+|++|++++|+++ ..|+++.
T Consensus       213 N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~-LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avc  288 (1255)
T KOG0444|consen  213 NIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRN-LRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVC  288 (1255)
T ss_pred             cCCCchhhhhhhhhccccccCCC-cchHHHhhhhh-hheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHh
Confidence            37999999999999999999998 99998877655 499999999998 55555566789999999999999 7899999


Q ss_pred             CCCCCcEEEcccCcccc-cCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcce
Q 048080           81 GCTSLEHLSMQDNSFTG-SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGI  159 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l  159 (223)
                      .++.|+.|++.+|+++- -+|..++.+.+|+++..++|.+. ..|..+..+++|+.|.++.|.+-......-.+..+..+
T Consensus       289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vL  367 (1255)
T KOG0444|consen  289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVL  367 (1255)
T ss_pred             hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCccee
Confidence            99999999999998873 46788999999999999999998 88999999999999999999988544445667888889


Q ss_pred             eecCCCCCCCCC
Q 048080          160 SLVGNENLCGGS  171 (223)
Q Consensus       160 ~~~~n~~~C~~~  171 (223)
                      ++..||.+--.+
T Consensus       368 DlreNpnLVMPP  379 (1255)
T KOG0444|consen  368 DLRENPNLVMPP  379 (1255)
T ss_pred             eccCCcCccCCC
Confidence            999998876543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.57  E-value=3.8e-17  Score=131.89  Aligned_cols=159  Identities=28%  Similarity=0.401  Sum_probs=85.4

Q ss_pred             CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccc----------------------cCCcCCCCC
Q 048080            1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSG----------------------HFPAEVGNL   58 (223)
Q Consensus         1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~----------------------~~~~~~~~l   58 (223)
                      ++|++++.+..|+.++..+|++. .+|++++..... ..+++.+|.+..                      .+|..+++|
T Consensus       128 el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l-~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l  205 (565)
T KOG0472|consen  128 ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKL-SKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGL  205 (565)
T ss_pred             ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHH-HHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcch
Confidence            35666666666666666666666 666665554433 445555555553                      333444444


Q ss_pred             CCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccc-cCCCCCCEEECCCCccccccchhhhCCCCCCEEe
Q 048080           59 KHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTL-SSLKSITELDLSRNNLSGHIPQYLENLSFLSFLN  137 (223)
Q Consensus        59 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~  137 (223)
                      .+|.-|++.+|.+. ..| .|.+++.|..++++.|.+. .+|... .+++++.+|||++|+++ ..|+.+.-+++|..||
T Consensus       206 ~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLD  281 (565)
T KOG0472|consen  206 ESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLD  281 (565)
T ss_pred             hhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhc
Confidence            44444444444444 223 3444444444555544444 333322 35566666666666666 5566666666666666


Q ss_pred             ccCCcCcccCCchhhhcCCcceeecCCCC
Q 048080          138 LSYNHFEGKVPIEAIFNSTKGISLVGNEN  166 (223)
Q Consensus       138 l~~N~l~~~~~~~~~~~~l~~l~~~~n~~  166 (223)
                      +++|.+++..+..... .+..+.+.|||.
T Consensus       282 lSNN~is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  282 LSNNDISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             ccCCccccCCcccccc-eeeehhhcCCch
Confidence            6666666544443333 455555556653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.57  E-value=1e-16  Score=128.99  Aligned_cols=157  Identities=25%  Similarity=0.255  Sum_probs=133.9

Q ss_pred             ecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcc-cCc
Q 048080           16 TTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQ-DNS   94 (223)
Q Consensus        16 ~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~-~N~   94 (223)
                      +=++-+++ ++|.++   ++..+.++|..|.|+.+++++|..+++|+.|||++|.|+.+.|++|.++.++..|-+- +|+
T Consensus        52 dCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk  127 (498)
T KOG4237|consen   52 DCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK  127 (498)
T ss_pred             EccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence            34555566 888764   5555889999999999999999999999999999999999999999999998665554 599


Q ss_pred             ccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCC-chhhhcCCcceeecCCCCCCCCCCC
Q 048080           95 FTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP-IEAIFNSTKGISLVGNENLCGGSRK  173 (223)
Q Consensus        95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~-~~~~~~~l~~l~~~~n~~~C~~~~~  173 (223)
                      |+...-++|.++.+|+.|.+.-|++.-...++|..++++..|.+-+|.+...+- .......++.+.+..||+.|+|.-.
T Consensus       128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~  207 (498)
T KOG4237|consen  128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP  207 (498)
T ss_pred             hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence            998888899999999999999999998888999999999999999999985544 2344667778889999999999776


Q ss_pred             CCc
Q 048080          174 SKF  176 (223)
Q Consensus       174 ~~~  176 (223)
                      +..
T Consensus       208 wla  210 (498)
T KOG4237|consen  208 WLA  210 (498)
T ss_pred             hhh
Confidence            553

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.49  E-value=6.5e-16  Score=124.86  Aligned_cols=152  Identities=27%  Similarity=0.419  Sum_probs=101.1

Q ss_pred             CCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcc
Q 048080           12 LILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQ   91 (223)
Q Consensus        12 L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~   91 (223)
                      ...++++.|++. ++|..+......++.+.+++|.++ ..|..++.+++|..|+|++|-+. ..|..++.+..|+.||++
T Consensus       390 Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS  466 (565)
T KOG0472|consen  390 VTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLS  466 (565)
T ss_pred             eEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccc
Confidence            344555555555 555555544444444555555555 55556667777888888777776 566777777778888888


Q ss_pred             cCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCCCC
Q 048080           92 DNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENL  167 (223)
Q Consensus        92 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~~~  167 (223)
                      .|++. .+|.....+..++.+-.++|++....|+.+..+.+|++||+.+|.+....|......++.++.+.|||+.
T Consensus       467 ~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  467 FNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            88777 6666555555555555566666655666677777788888888887766666667777777888888763

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.45  E-value=7.1e-14  Score=103.60  Aligned_cols=104  Identities=29%  Similarity=0.309  Sum_probs=29.7

Q ss_pred             ceEEEccCCcccccCCcCCC-CCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccc-cCCCCCCEEEC
Q 048080           37 SVLLDLFDNLLSGHFPAEVG-NLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTL-SSLKSITELDL  114 (223)
Q Consensus        37 l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L  114 (223)
                      +++|+|.+|.|+.+.  .+. .+.+|+.|++++|.|+.+  +.+..++.|++|++++|+++.. .+.+ ..+++|++|++
T Consensus        21 ~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   21 LRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYL   95 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccccc--chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEEC
Confidence            356666666666322  222 355666666666666643  2355566666666666666632 2223 34566666666


Q ss_pred             CCCcccccc-chhhhCCCCCCEEeccCCcCcc
Q 048080          115 SRNNLSGHI-PQYLENLSFLSFLNLSYNHFEG  145 (223)
Q Consensus       115 ~~N~l~~~~-p~~~~~l~~L~~l~l~~N~l~~  145 (223)
                      ++|++.... -..+..+++|+.|++.+|+++.
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            666665321 1345556666666666666653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.41  E-value=2.1e-14  Score=120.58  Aligned_cols=137  Identities=31%  Similarity=0.494  Sum_probs=122.9

Q ss_pred             CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080            1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG   80 (223)
Q Consensus         1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   80 (223)
                      .||++++++..|++++|+.|++. .+|..++.+.  |+.|.+++|+++ ..|..++.+..|..|+.+.|.+. ..|..++
T Consensus       112 ~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~  186 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP--LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG  186 (722)
T ss_pred             ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc--ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh
Confidence            38999999999999999999998 9999887654  488999999999 77777888899999999999998 6777889


Q ss_pred             CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcc
Q 048080           81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG  145 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~  145 (223)
                      ++.+|+.|++..|++. .+|..+..++ |..||+++|+++ .+|-.|.++..|++|-|.+|++..
T Consensus       187 ~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  187 YLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            9999999999999999 6666677765 999999999999 889999999999999999999985

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.38  E-value=4.2e-13  Score=99.52  Aligned_cols=127  Identities=25%  Similarity=0.247  Sum_probs=53.0

Q ss_pred             CCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccc-cCCCCC
Q 048080            7 GNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTL-GGCTSL   85 (223)
Q Consensus         7 ~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L   85 (223)
                      .+...+++|++.+|.|. .+. .+...+..|+.|++++|.|+...  .+..+++|++|++++|.|+.+. +.+ ..+++|
T Consensus        16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L   90 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNL   90 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-C-HHHHHH-TT-
T ss_pred             ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccc-cchHHhCCcC
Confidence            34557899999999998 664 45545677899999999999543  4788999999999999999653 334 468999


Q ss_pred             cEEEcccCcccccCC-ccccCCCCCCEEECCCCccccc---cchhhhCCCCCCEEec
Q 048080           86 EHLSMQDNSFTGSIP-STLSSLKSITELDLSRNNLSGH---IPQYLENLSFLSFLNL  138 (223)
Q Consensus        86 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~---~p~~~~~l~~L~~l~l  138 (223)
                      +.|++++|++..... ..+..+++|+.|++.+|.++..   ....+..+|+|+.||-
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            999999999985322 4577889999999999999843   1235677899999874

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.37  E-value=9.6e-14  Score=113.13  Aligned_cols=162  Identities=22%  Similarity=0.228  Sum_probs=99.8

Q ss_pred             CCCCCCCCCCeeecccCccccCCChhhhhccC--CceEEEccCCcccc----cCCcCCCCC-CCCCeEeccCcccccc--
Q 048080            4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIIT--RSVLLDLFDNLLSG----HFPAEVGNL-KHLVSLDISSNMFSGE--   74 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~--~l~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~--   74 (223)
                      .++..+++|+.|++++|.+.+..+..+.....  .|+.|++++|.++.    .....+..+ ++|+.|++++|.+++.  
T Consensus        75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  154 (319)
T cd00116          75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC  154 (319)
T ss_pred             HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence            45566778888888888876434433322222  36888888887762    222334455 7788888888887732  


Q ss_pred             --CCccccCCCCCcEEEcccCccccc----CCccccCCCCCCEEECCCCcccccc----chhhhCCCCCCEEeccCCcCc
Q 048080           75 --IPTTLGGCTSLEHLSMQDNSFTGS----IPSTLSSLKSITELDLSRNNLSGHI----PQYLENLSFLSFLNLSYNHFE  144 (223)
Q Consensus        75 --~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~l~l~~N~l~  144 (223)
                        .+..+..+.+|++|++++|.+++.    ++..+..+++|++|++++|.+++..    ...+..+++|+.|++++|++.
T Consensus       155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence              233456667788888888877732    2333455567888888888776432    334556677888888888776


Q ss_pred             ccCCc--hhh----hcCCcceeecCCC
Q 048080          145 GKVPI--EAI----FNSTKGISLVGNE  165 (223)
Q Consensus       145 ~~~~~--~~~----~~~l~~l~~~~n~  165 (223)
                      +....  ...    ...++.+++.+|.
T Consensus       235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         235 DAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             hHHHHHHHHHHhccCCCceEEEccCCC
Confidence            42111  111    1466667776664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.35  E-value=7.3e-12  Score=117.86  Aligned_cols=157  Identities=19%  Similarity=0.239  Sum_probs=104.9

Q ss_pred             CCCCCCCCCCeeecccCc------cccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCc
Q 048080            4 PSLGNCQNLILLTTCKNK------LSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT   77 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~------i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~   77 (223)
                      .+|.+|++|+.|.+..+.      +...+|+++...+..|+.|++.++.+. .+|..| .+.+|+.|++++|.+. ..+.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence            467888888888886553      223567666666667788888887776 556555 4677888888887776 4555


Q ss_pred             cccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCc
Q 048080           78 TLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTK  157 (223)
Q Consensus        78 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~  157 (223)
                      .+..+++|+.++|+++.....+|+ +..+++|+.|+|++|.....+|..+..+++|+.|++++|.....+|......+++
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~  707 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLY  707 (1153)
T ss_pred             ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCC
Confidence            667777788888877654445554 6667777777777766555677777777777777777765444455433344555


Q ss_pred             ceeecCC
Q 048080          158 GISLVGN  164 (223)
Q Consensus       158 ~l~~~~n  164 (223)
                      .+++.++
T Consensus       708 ~L~Lsgc  714 (1153)
T PLN03210        708 RLNLSGC  714 (1153)
T ss_pred             EEeCCCC
Confidence            5555544

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.34  E-value=1.1e-11  Score=116.77  Aligned_cols=157  Identities=23%  Similarity=0.220  Sum_probs=82.3

Q ss_pred             CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCC
Q 048080            3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC   82 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l   82 (223)
                      |..+..+++|+.|+++++.....+|.  +...+.|++|++++|.....+|..+..+++|+.|++++|..-...|..+ ++
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            44455566666666655443335553  2334555666666655444556666666666666666653222333322 33


Q ss_pred             CCCcEEEccc---------------------CcccccCCccc------------------------------cCCCCCCE
Q 048080           83 TSLEHLSMQD---------------------NSFTGSIPSTL------------------------------SSLKSITE  111 (223)
Q Consensus        83 ~~L~~L~L~~---------------------N~l~~~~~~~~------------------------------~~l~~L~~  111 (223)
                      ++|+.|++++                     |.+. .+|..+                              ...++|+.
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~  782 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR  782 (1153)
T ss_pred             CCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence            4444444433                     3332 122111                              01235666


Q ss_pred             EECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecC
Q 048080          112 LDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVG  163 (223)
Q Consensus       112 L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~  163 (223)
                      |++++|...+.+|..+..+++|+.|++++|.....+|.......++.+++++
T Consensus       783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~  834 (1153)
T PLN03210        783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSG  834 (1153)
T ss_pred             eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCC
Confidence            6777666665677777788888888887765444444332334444444444

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.34  E-value=5.6e-14  Score=123.59  Aligned_cols=104  Identities=26%  Similarity=0.290  Sum_probs=79.9

Q ss_pred             CCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccC
Q 048080           61 LVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSY  140 (223)
Q Consensus        61 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~  140 (223)
                      |+.|++.+|.++...-..+.+..+|+.|+|++|++.......+.++..|+.|+|++|+++ .+|+++..++.|++|...+
T Consensus       361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahs  439 (1081)
T KOG0618|consen  361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHS  439 (1081)
T ss_pred             HHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcC
Confidence            444455555555444455666788999999999998444456788899999999999999 6788899999999999999


Q ss_pred             CcCcccCCchhhhcCCcceeecCCCC
Q 048080          141 NHFEGKVPIEAIFNSTKGISLVGNEN  166 (223)
Q Consensus       141 N~l~~~~~~~~~~~~l~~l~~~~n~~  166 (223)
                      |.+.+ .|.....+.++.+|++.|..
T Consensus       440 N~l~~-fPe~~~l~qL~~lDlS~N~L  464 (1081)
T KOG0618|consen  440 NQLLS-FPELAQLPQLKVLDLSCNNL  464 (1081)
T ss_pred             Cceee-chhhhhcCcceEEecccchh
Confidence            99884 45667788888888888744

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.33  E-value=4.5e-12  Score=113.31  Aligned_cols=35  Identities=23%  Similarity=0.285  Sum_probs=17.4

Q ss_pred             CCCCeeecccCccccCCChhhhhccCCceEEEccCCccc
Q 048080           10 QNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLS   48 (223)
Q Consensus        10 ~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~   48 (223)
                      ++|+.|++++|.+. .+|..++   ..|+.|++++|.+.
T Consensus       220 ~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~  254 (754)
T PRK15370        220 GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRIT  254 (754)
T ss_pred             cCCCEEECCCCccc-cCChhhh---ccccEEECcCCccC
Confidence            35666666666665 5554332   22344444444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.32  E-value=4.9e-12  Score=113.07  Aligned_cols=147  Identities=20%  Similarity=0.324  Sum_probs=99.1

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG   81 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   81 (223)
                      +|..+.  ++|+.|++++|+++ .+|..++   ..|++|++++|.++ .+|..+.  .+|+.|++++|.+. .+|..+. 
T Consensus       193 LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~-  261 (754)
T PRK15370        193 IPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP-  261 (754)
T ss_pred             CCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh-
Confidence            455443  57899999999998 8898765   46799999999998 4555443  46888888888887 4555543 


Q ss_pred             CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhh-------------------CCCCCCEEeccCCc
Q 048080           82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLE-------------------NLSFLSFLNLSYNH  142 (223)
Q Consensus        82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-------------------~l~~L~~l~l~~N~  142 (223)
                       .+|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+.                   -.++|+.|++++|.
T Consensus       262 -s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~  336 (754)
T PRK15370        262 -SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA  336 (754)
T ss_pred             -CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCc
Confidence             47888888888888 4565443  478888888888774 332221                   11346666666666


Q ss_pred             CcccCCchhhhcCCcceeecCCCC
Q 048080          143 FEGKVPIEAIFNSTKGISLVGNEN  166 (223)
Q Consensus       143 l~~~~~~~~~~~~l~~l~~~~n~~  166 (223)
                      +++ +|. .....+..+++++|..
T Consensus       337 Lt~-LP~-~l~~sL~~L~Ls~N~L  358 (754)
T PRK15370        337 LTS-LPA-SLPPELQVLDVSKNQI  358 (754)
T ss_pred             ccc-CCh-hhcCcccEEECCCCCC
Confidence            664 332 2235667777777754

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.29  E-value=4.5e-13  Score=109.18  Aligned_cols=157  Identities=26%  Similarity=0.272  Sum_probs=99.4

Q ss_pred             CCCCeeecccCccccC----CChhhhhccCCceEEEccCCccccc----CCcCCCCCCCCCeEeccCcccccc----CCc
Q 048080           10 QNLILLTTCKNKLSGT----VPRQLLRIITRSVLLDLFDNLLSGH----FPAEVGNLKHLVSLDISSNMFSGE----IPT   77 (223)
Q Consensus        10 ~~L~~L~l~~n~i~~~----~p~~~~~~~~~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~   77 (223)
                      ++|++|++++|.+.+.    +...+....+.|+.|++++|.+++.    .+..+..+++|++|++++|.+++.    .+.
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  187 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE  187 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence            3488888888887631    2222222226678888888888732    233456677888888888887742    223


Q ss_pred             cccCCCCCcEEEcccCccccc----CCccccCCCCCCEEECCCCccccccchhhhC-----CCCCCEEeccCCcCcc--c
Q 048080           78 TLGGCTSLEHLSMQDNSFTGS----IPSTLSSLKSITELDLSRNNLSGHIPQYLEN-----LSFLSFLNLSYNHFEG--K  146 (223)
Q Consensus        78 ~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~l~l~~N~l~~--~  146 (223)
                      .+..+++|+.|++++|.+++.    +...+..+++|++|++++|.+++.....+..     .+.|+.+++++|.++.  .
T Consensus       188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~  267 (319)
T cd00116         188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA  267 (319)
T ss_pred             HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence            345556888888888887643    2334566778888888888887533332221     3678888888888762  1


Q ss_pred             CCch---hhhcCCcceeecCCCC
Q 048080          147 VPIE---AIFNSTKGISLVGNEN  166 (223)
Q Consensus       147 ~~~~---~~~~~l~~l~~~~n~~  166 (223)
                      .+..   .....+..+++++|..
T Consensus       268 ~~l~~~~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         268 KDLAEVLAEKESLLELDLRGNKF  290 (319)
T ss_pred             HHHHHHHhcCCCccEEECCCCCC
Confidence            1111   2234566777777654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.29  E-value=8.1e-14  Score=117.10  Aligned_cols=160  Identities=28%  Similarity=0.369  Sum_probs=122.8

Q ss_pred             CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080            1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG   80 (223)
Q Consensus         1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   80 (223)
                      ++|.+++.+..|+.+.+..|.+. .+|+.+.. +..|+.+||+.|+++ ..|..++.++ |+.|.+++|+++ ..|..++
T Consensus        89 elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~-L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig  163 (722)
T KOG0532|consen   89 ELPEEACAFVSLESLILYHNCIR-TIPEAICN-LEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIG  163 (722)
T ss_pred             cCchHHHHHHHHHHHHHHhccce-ecchhhhh-hhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccc
Confidence            46777777777777888888887 77776544 344588888888888 5565555554 788888888887 6677777


Q ss_pred             CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCccee
Q 048080           81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGIS  160 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~  160 (223)
                      .+..|..||.+.|.+. ..|..++++.+|+.|++..|++. ..|..+..++ |..||++.|++....-....+..++.+.
T Consensus       164 ~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~  240 (722)
T KOG0532|consen  164 LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQ  240 (722)
T ss_pred             cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeee
Confidence            8888888888888888 66777888888999999999988 5566677555 8999999999994333446677888899


Q ss_pred             ecCCCCCC
Q 048080          161 LVGNENLC  168 (223)
Q Consensus       161 ~~~n~~~C  168 (223)
                      +..||...
T Consensus       241 LenNPLqS  248 (722)
T KOG0532|consen  241 LENNPLQS  248 (722)
T ss_pred             eccCCCCC
Confidence            99998753

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.27  E-value=9.7e-12  Score=110.98  Aligned_cols=80  Identities=26%  Similarity=0.374  Sum_probs=52.2

Q ss_pred             CCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEecc
Q 048080           60 HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLS  139 (223)
Q Consensus        60 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~  139 (223)
                      +|+.|++++|.+++ .|..   .++|+.|++++|++++ +|..+   .+|+.|++++|+++ .+|..+..+++|+.++++
T Consensus       383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  453 (788)
T ss_pred             ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence            46666666666663 3322   2456677777777763 44422   35677777777777 567777778888888888


Q ss_pred             CCcCcccCC
Q 048080          140 YNHFEGKVP  148 (223)
Q Consensus       140 ~N~l~~~~~  148 (223)
                      +|++++..+
T Consensus       454 ~N~Ls~~~~  462 (788)
T PRK15387        454 GNPLSERTL  462 (788)
T ss_pred             CCCCCchHH
Confidence            888876554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.26  E-value=5.2e-12  Score=77.65  Aligned_cols=56  Identities=34%  Similarity=0.508  Sum_probs=20.3

Q ss_pred             CeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCC
Q 048080           62 VSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRN  117 (223)
Q Consensus        62 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  117 (223)
                      ++|++++|.++.+.++.|.++++|++|++++|+++...+++|.++++|++|++++|
T Consensus         4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             SEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            33333333333333333333333333333333333333333333333333333333

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.25  E-value=2.7e-11  Score=108.16  Aligned_cols=76  Identities=26%  Similarity=0.338  Sum_probs=42.9

Q ss_pred             CCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCcceeec
Q 048080           84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGISLV  162 (223)
Q Consensus        84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l~~~  162 (223)
                      +|+.|++++|.+++ +|..   .++|+.|++++|.+++ +|...   .+|+.|++++|+++ .+|.. ..+..+..+++.
T Consensus       383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  453 (788)
T ss_pred             ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence            45555555555552 3321   2345666666666653 34322   34566777777776 34432 345677788999


Q ss_pred             CCCCCC
Q 048080          163 GNENLC  168 (223)
Q Consensus       163 ~n~~~C  168 (223)
                      +|+...
T Consensus       454 ~N~Ls~  459 (788)
T PRK15387        454 GNPLSE  459 (788)
T ss_pred             CCCCCc
Confidence            998754

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.25  E-value=7.4e-13  Score=103.97  Aligned_cols=133  Identities=25%  Similarity=0.283  Sum_probs=105.4

Q ss_pred             CCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEE
Q 048080            9 CQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHL   88 (223)
Q Consensus         9 l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   88 (223)
                      ...|+.+|+++|.|+ .+.++. ...+.++.|++++|.+. .... +..+++|+.|||++|.++ .+.++-..+.++++|
T Consensus       283 Wq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL  357 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhh-hhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence            356888999999998 888765 56677799999999988 3333 788999999999999988 455566678899999


Q ss_pred             EcccCcccccCCccccCCCCCCEEECCCCccccccc-hhhhCCCCCCEEeccCCcCcccCC
Q 048080           89 SMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFEGKVP  148 (223)
Q Consensus        89 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~~~  148 (223)
                      .|+.|.+...  ..+..+-+|..||+++|++..... ..++.+|-|+++.+.+|++.+.+.
T Consensus       358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            9999988633  346777789999999999974322 357788889999999999986554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.23  E-value=8.8e-12  Score=76.61  Aligned_cols=61  Identities=38%  Similarity=0.587  Sum_probs=57.4

Q ss_pred             CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcC
Q 048080           83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF  143 (223)
Q Consensus        83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l  143 (223)
                      ++|++|++++|+++...++.|.++++|++|++++|.+++..+.+|..+++|+.+++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999999988888999999999999999999988889999999999999999975

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.06  E-value=1e-10  Score=98.33  Aligned_cols=18  Identities=44%  Similarity=0.521  Sum_probs=8.1

Q ss_pred             hhCCCCCCEEeccCCcCc
Q 048080          127 LENLSFLSFLNLSYNHFE  144 (223)
Q Consensus       127 ~~~l~~L~~l~l~~N~l~  144 (223)
                      +..++.++++++++|.++
T Consensus       251 ~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         251 IGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             hccccccceecccccccc
Confidence            334444444444444444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.06  E-value=2.1e-11  Score=95.86  Aligned_cols=125  Identities=25%  Similarity=0.220  Sum_probs=96.0

Q ss_pred             ceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCC
Q 048080           37 SVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR  116 (223)
Q Consensus        37 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  116 (223)
                      |+++||++|.|+ .++.+..-++.++.|++++|.+..+  +.+..+++|+.||||+|.++ ...+.-..+.+.+.|.|+.
T Consensus       286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence            478999999998 6777777889999999999999855  33788999999999999988 4445455677889999999


Q ss_pred             CccccccchhhhCCCCCCEEeccCCcCccc--CCchhhhcCCcceeecCCCCC
Q 048080          117 NNLSGHIPQYLENLSFLSFLNLSYNHFEGK--VPIEAIFNSTKGISLVGNENL  167 (223)
Q Consensus       117 N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~--~~~~~~~~~l~~l~~~~n~~~  167 (223)
                      |.+...  +.+..+-+|..||+++|++...  +......+.+..+.+.+||..
T Consensus       362 N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  362 NKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            998733  3466777889999999998742  122234555667778888763

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.01  E-value=2.7e-10  Score=95.79  Aligned_cols=139  Identities=32%  Similarity=0.457  Sum_probs=95.1

Q ss_pred             CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCC
Q 048080            3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC   82 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l   82 (223)
                      |..+.++++|+.|++++|++. ++|.... ..+.|+.|++++|.+. .+|.....+..|+++++++|.+. ..+..+..+
T Consensus       156 ~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~  231 (394)
T COG4886         156 PSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNL  231 (394)
T ss_pred             hhhhhccccccccccCCchhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhc
Confidence            345566666666666666666 6664322 3444566677777666 44443334445777777777433 344556667


Q ss_pred             CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCC
Q 048080           83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP  148 (223)
Q Consensus        83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~  148 (223)
                      .++..+.+.+|++. ..+..+..+++++.|++++|.++...+  +..+.+++.+++++|.+....+
T Consensus       232 ~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         232 KNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence            77777778888777 436678888899999999999995543  8889999999999999876544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.97  E-value=1.5e-11  Score=106.40  Aligned_cols=160  Identities=24%  Similarity=0.185  Sum_probs=117.0

Q ss_pred             CCCCCCCCCCCeeecccCccccC--------------------------------CChhhhhccCCceEEEccCCccccc
Q 048080            3 PPSLGNCQNLILLTTCKNKLSGT--------------------------------VPRQLLRIITRSVLLDLFDNLLSGH   50 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~i~~~--------------------------------~p~~~~~~~~~l~~L~L~~n~l~~~   50 (223)
                      |-.+..+.+|++|.+.++.+...                                +-. .+.|.. |.+.+.++|.+. .
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~n-s~~Wn~-L~~a~fsyN~L~-~  178 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISN-SPVWNK-LATASFSYNRLV-L  178 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhcccccc-chhhhh-HhhhhcchhhHH-h
Confidence            44567778899998888776520                                000 112222 244567777777 6


Q ss_pred             CCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCC
Q 048080           51 FPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENL  130 (223)
Q Consensus        51 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  130 (223)
                      .+.++.-++.|+.|+|++|.++...  .+..|+.|++|||++|.++ .+|..-..-.+|+.|.+++|.++...  .+.++
T Consensus       179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~--gie~L  253 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLR--GIENL  253 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhhh--hHHhh
Confidence            6677777889999999999998553  7788999999999999999 55543222245999999999998543  47788


Q ss_pred             CCCCEEeccCCcCcccCC--chhhhcCCcceeecCCCCCCCC
Q 048080          131 SFLSFLNLSYNHFEGKVP--IEAIFNSTKGISLVGNENLCGG  170 (223)
Q Consensus       131 ~~L~~l~l~~N~l~~~~~--~~~~~~~l~~l~~~~n~~~C~~  170 (223)
                      .+|+.||+++|-+.+-..  ..+.+..+..+.+.|||.-|..
T Consensus       254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            999999999999886433  3366777888999999988864

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=4.1e-10  Score=92.39  Aligned_cols=87  Identities=20%  Similarity=0.259  Sum_probs=48.8

Q ss_pred             CCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCC-ccccCCCCCCEEECCCCccccc-cchh-----hhCC
Q 048080           58 LKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIP-STLSSLKSITELDLSRNNLSGH-IPQY-----LENL  130 (223)
Q Consensus        58 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~p~~-----~~~l  130 (223)
                      +++|+.|+|..|...........-+..|+.|||++|++-.... ...+.++.|..|+++.+.++.+ .|+.     ....
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f  300 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF  300 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence            3445555555553222223333445667777777776652211 2345667777777777766643 2222     3456


Q ss_pred             CCCCEEeccCCcCc
Q 048080          131 SFLSFLNLSYNHFE  144 (223)
Q Consensus       131 ~~L~~l~l~~N~l~  144 (223)
                      ++|++|++..|++.
T Consensus       301 ~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  301 PKLEYLNISENNIR  314 (505)
T ss_pred             ccceeeecccCccc
Confidence            77788888888775

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.74  E-value=1.3e-10  Score=100.64  Aligned_cols=129  Identities=29%  Similarity=0.296  Sum_probs=100.4

Q ss_pred             CCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEc
Q 048080           11 NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSM   90 (223)
Q Consensus        11 ~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L   90 (223)
                      .|...++++|.+. .+.+.+ +.++.++.|+|++|++....  .+..++.|++||+++|.+..+.--...++. |+.|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SL-qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESL-QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHH-HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence            4677788999997 666654 66677799999999998543  678899999999999999844322344444 999999


Q ss_pred             ccCcccccCCccccCCCCCCEEECCCCccccccc-hhhhCCCCCCEEeccCCcCccc
Q 048080           91 QDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFEGK  146 (223)
Q Consensus        91 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~  146 (223)
                      .+|.++...  .+.++.+|+.||++.|-+.+... ..+..+..|+.|.+.||++.|.
T Consensus       240 rnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  240 RNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             cccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            999998442  36788999999999999875422 2355677889999999999863

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.69  E-value=6.9e-10  Score=77.82  Aligned_cols=80  Identities=23%  Similarity=0.412  Sum_probs=36.3

Q ss_pred             eEEEccCCcccccCCcCCC-CCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCC
Q 048080           38 VLLDLFDNLLSGHFPAEVG-NLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR  116 (223)
Q Consensus        38 ~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  116 (223)
                      +..+|++|.+. ..|..|. ..+.+++++|++|.++ ..|..+..++.|+.|+++.|.+. ..|..+..+.++..|+..+
T Consensus        56 ~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen   56 TKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             EEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCC
Confidence            33455555555 2222222 2234455555555554 33333555555555555555554 3343344444444555444


Q ss_pred             Cccc
Q 048080          117 NNLS  120 (223)
Q Consensus       117 N~l~  120 (223)
                      |.+.
T Consensus       133 na~~  136 (177)
T KOG4579|consen  133 NARA  136 (177)
T ss_pred             Cccc
Confidence            4444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=6.1e-09  Score=85.64  Aligned_cols=159  Identities=24%  Similarity=0.158  Sum_probs=97.5

Q ss_pred             CCCCCCCeeecccCccccCCCh--hhhhccCCceEEEccCCcccccCCcC-CCCCCCCCeEeccCccccccCCc-cccCC
Q 048080            7 GNCQNLILLTTCKNKLSGTVPR--QLLRIITRSVLLDLFDNLLSGHFPAE-VGNLKHLVSLDISSNMFSGEIPT-TLGGC   82 (223)
Q Consensus         7 ~~l~~L~~L~l~~n~i~~~~p~--~~~~~~~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~-~~~~l   82 (223)
                      ..|++++.||++.|-+. ....  .+..-++.|+.|+++.|.+....... -..++.|+.|.++.|.++...-. ....+
T Consensus       143 k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f  221 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF  221 (505)
T ss_pred             hhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence            45667777777777665 3222  23344566677777777665322211 12456677777777776632222 23456


Q ss_pred             CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccc-hhhhCCCCCCEEeccCCcCccc-CCch------hhhc
Q 048080           83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFEGK-VPIE------AIFN  154 (223)
Q Consensus        83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~-~~~~------~~~~  154 (223)
                      ++|..|+|..|...........-+..|+.|||++|++-.... .....++.|+.|+++.+.+... .|+.      ..+.
T Consensus       222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~  301 (505)
T KOG3207|consen  222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP  301 (505)
T ss_pred             CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence            778888888885332333344556788999999988874431 3466788888888888887652 1221      4466


Q ss_pred             CCcceeecCCCC
Q 048080          155 STKGISLVGNEN  166 (223)
Q Consensus       155 ~l~~l~~~~n~~  166 (223)
                      .++.+.+..|+.
T Consensus       302 kL~~L~i~~N~I  313 (505)
T KOG3207|consen  302 KLEYLNISENNI  313 (505)
T ss_pred             cceeeecccCcc
Confidence            777777777765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.55  E-value=1.2e-08  Score=86.48  Aligned_cols=104  Identities=31%  Similarity=0.286  Sum_probs=46.0

Q ss_pred             CCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEEC
Q 048080           35 TRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDL  114 (223)
Q Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  114 (223)
                      ..++.|++.+|.|..+. ..+..+++|++|++++|.|+.+.  .+..++.|+.|++++|.++.. . .+..++.|+.+++
T Consensus        95 ~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~-~-~~~~l~~L~~l~l  169 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI-S-GLESLKSLKLLDL  169 (414)
T ss_pred             cceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc-c-CCccchhhhcccC
Confidence            33355555555554222 22344555555555555554332  233344455555555555422 1 2333445555555


Q ss_pred             CCCccccccchhhhCCCCCCEEeccCCcC
Q 048080          115 SRNNLSGHIPQYLENLSFLSFLNLSYNHF  143 (223)
Q Consensus       115 ~~N~l~~~~p~~~~~l~~L~~l~l~~N~l  143 (223)
                      ++|.+....+.....+.+++.+++++|.+
T Consensus       170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  170 SYNRIVDIENDELSELISLEELDLGGNSI  198 (414)
T ss_pred             CcchhhhhhhhhhhhccchHHHhccCCch
Confidence            55555433220023444444444444444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.51  E-value=2e-07  Score=69.60  Aligned_cols=126  Identities=21%  Similarity=0.118  Sum_probs=92.9

Q ss_pred             CCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcc
Q 048080           12 LILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQ   91 (223)
Q Consensus        12 L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~   91 (223)
                      =+.+++.+.++. .+ +.+..+......+||++|.+..  -..|..++.|.+|.+++|+|+.+.|.--..+++|+.|.|.
T Consensus        21 e~e~~LR~lkip-~i-enlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   21 ERELDLRGLKIP-VI-ENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             cccccccccccc-ch-hhccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence            456778887775 33 3355666666889999998862  2457888999999999999998877766667889999999


Q ss_pred             cCcccccCC-ccccCCCCCCEEECCCCcccccc---chhhhCCCCCCEEeccCC
Q 048080           92 DNSFTGSIP-STLSSLKSITELDLSRNNLSGHI---PQYLENLSFLSFLNLSYN  141 (223)
Q Consensus        92 ~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~l~l~~N  141 (223)
                      +|++..... +-+..+++|++|.+-+|.++..-   --.+..+|+|+.||+.+=
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            998873211 23677889999999999887431   134567888999987653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.51  E-value=1.6e-08  Score=85.67  Aligned_cols=109  Identities=28%  Similarity=0.309  Sum_probs=85.5

Q ss_pred             CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCC
Q 048080            6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSL   85 (223)
Q Consensus         6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   85 (223)
                      +..+.+|+.|++.+|+|. .+... ......|++|++++|.|+...+  +..++.|+.|++++|.|+.+  ..+..+..|
T Consensus        91 l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L  164 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSL  164 (414)
T ss_pred             cccccceeeeeccccchh-hcccc-hhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhh
Confidence            567889999999999998 55542 3456677999999999986544  45677799999999999854  456668999


Q ss_pred             cEEEcccCcccccCC-ccccCCCCCCEEECCCCcccc
Q 048080           86 EHLSMQDNSFTGSIP-STLSSLKSITELDLSRNNLSG  121 (223)
Q Consensus        86 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~  121 (223)
                      +.+++++|.+....+ . ...+.+++.+++.+|.+..
T Consensus       165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            999999999985544 2 4677888888888888763

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.48  E-value=6.2e-07  Score=63.21  Aligned_cols=123  Identities=19%  Similarity=0.254  Sum_probs=66.4

Q ss_pred             CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCC
Q 048080            4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCT   83 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~   83 (223)
                      .+|.++++|+.+.+.. .+. .+++..|.....++.+.+.++ +.......|.++++++.+.+.. .+.......|..+.
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence            4677777888888774 565 777777877767788888775 6656667788877788888865 44445556777788


Q ss_pred             CCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCC
Q 048080           84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFL  133 (223)
Q Consensus        84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  133 (223)
                      +|+.+++..+ +.......|.+. .++.+.+.. .++.+....|.++++|
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            8888888665 554555667776 778777765 4444555666666655

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.44  E-value=7.2e-09  Score=72.76  Aligned_cols=111  Identities=18%  Similarity=0.240  Sum_probs=84.5

Q ss_pred             CCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEE
Q 048080           10 QNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLS   89 (223)
Q Consensus        10 ~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   89 (223)
                      ..|...++++|.+. .+|+.+....+.+++|++++|.++ ..|..+..|+.|+.|+++.|.+. ..|..+..|.++..|+
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            34566799999998 999988887778899999999999 67777999999999999999998 6677777799999999


Q ss_pred             cccCcccccCCccccCCCCCCEEECCCCccccccc
Q 048080           90 MQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP  124 (223)
Q Consensus        90 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p  124 (223)
                      ..+|.+.....+.|.. +..-..+++++.+.+..+
T Consensus       130 s~~na~~eid~dl~~s-~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  130 SPENARAEIDVDLFYS-SLPALIKLGNEPLGDETK  163 (177)
T ss_pred             CCCCccccCcHHHhcc-ccHHHHHhcCCcccccCc
Confidence            9999887333332221 222233445555554444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.42  E-value=1.7e-07  Score=85.60  Aligned_cols=107  Identities=30%  Similarity=0.407  Sum_probs=69.0

Q ss_pred             CCCCeeecccCc--cccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcE
Q 048080           10 QNLILLTTCKNK--LSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEH   87 (223)
Q Consensus        10 ~~L~~L~l~~n~--i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   87 (223)
                      +.|+.|-+..|.  +. .++..+|..++.|+.|||++|.=-+.+|..++.+-+|++|++++..+. ..|..+.++..|.+
T Consensus       545 ~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            356666666665  44 666666666677777777766555566666667777777777777666 56666677777777


Q ss_pred             EEcccCcccccCCccccCCCCCCEEECCCCc
Q 048080           88 LSMQDNSFTGSIPSTLSSLKSITELDLSRNN  118 (223)
Q Consensus        88 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  118 (223)
                      ||+..+.-...+|.....+++|++|.+....
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeeccc
Confidence            7777665444445555556677777665543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.41  E-value=1.6e-07  Score=85.87  Aligned_cols=129  Identities=24%  Similarity=0.267  Sum_probs=99.2

Q ss_pred             CCCCeeecccCccccCCChhhhhccCCceEEEccCCc--ccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcE
Q 048080           10 QNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNL--LSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEH   87 (223)
Q Consensus        10 ~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   87 (223)
                      ...+.+.+.+|.+. .++...-  .+.|++|-+..|.  +.......|..|+.|+.|||++|.=-+..|..+++|-+|++
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~~~--~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGSSE--NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchh-hccCCCC--CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            45677777777776 5554332  2246788888885  55455556888999999999988766688888899999999


Q ss_pred             EEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCc
Q 048080           88 LSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH  142 (223)
Q Consensus        88 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~  142 (223)
                      |++++..+. .+|..+..+..|.+||+..+.-...+|.....+++|++|.+-.-.
T Consensus       600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            999999888 778888999999999998887665667777778888888776544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.37  E-value=8.2e-08  Score=77.02  Aligned_cols=141  Identities=19%  Similarity=0.161  Sum_probs=88.6

Q ss_pred             CCCCCCCCCCeeecccCccccCCChhhh---hccCCceEEEccCCcccccCC-------------cCCCCCCCCCeEecc
Q 048080            4 PSLGNCQNLILLTTCKNKLSGTVPRQLL---RIITRSVLLDLFDNLLSGHFP-------------AEVGNLKHLVSLDIS   67 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~---~~~~~l~~L~L~~n~l~~~~~-------------~~~~~l~~L~~L~l~   67 (223)
                      +++..++.|++|+||+|.+....++.+.   +....|+.|+|.+|.+...-.             ...+.-+.|+.+...
T Consensus        86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG  165 (382)
T ss_pred             HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence            3455667899999999988755554433   335667888888887762211             122344678888888


Q ss_pred             CccccccC----CccccCCCCCcEEEcccCccccc----CCccccCCCCCCEEECCCCccccc----cchhhhCCCCCCE
Q 048080           68 SNMFSGEI----PTTLGGCTSLEHLSMQDNSFTGS----IPSTLSSLKSITELDLSRNNLSGH----IPQYLENLSFLSF  135 (223)
Q Consensus        68 ~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~  135 (223)
                      +|++....    ...|...+.|+.+.++.|.+...    .-.+|..++.|++|||.+|-++..    +..++..++.|+.
T Consensus       166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE  245 (382)
T ss_pred             ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence            88776322    22355566777777777766521    113456667777777777777632    3345666677777


Q ss_pred             EeccCCcCc
Q 048080          136 LNLSYNHFE  144 (223)
Q Consensus       136 l~l~~N~l~  144 (223)
                      ++++++.+.
T Consensus       246 l~l~dcll~  254 (382)
T KOG1909|consen  246 LNLGDCLLE  254 (382)
T ss_pred             ecccccccc
Confidence            777776665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.28  E-value=8.1e-07  Score=50.41  Aligned_cols=15  Identities=53%  Similarity=0.503  Sum_probs=5.6

Q ss_pred             hCCCCCCEEeccCCc
Q 048080          128 ENLSFLSFLNLSYNH  142 (223)
Q Consensus       128 ~~l~~L~~l~l~~N~  142 (223)
                      ..+++|+.|++++|+
T Consensus        21 ~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen   21 SNLPNLETLNLSNNP   35 (44)
T ss_dssp             TTCTTSSEEEETSSC
T ss_pred             hCCCCCCEEEecCCC
Confidence            333333333333333

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.22  E-value=2.6e-06  Score=63.77  Aligned_cols=105  Identities=21%  Similarity=0.158  Sum_probs=80.0

Q ss_pred             eEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCC
Q 048080           38 VLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRN  117 (223)
Q Consensus        38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  117 (223)
                      +.++|.+..+... ..--..+.....+||+.|.+...  +.|..+++|.+|.+++|+|+.+-|.--.-++.|+.|.|.+|
T Consensus        22 ~e~~LR~lkip~i-enlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   22 RELDLRGLKIPVI-ENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             cccccccccccch-hhccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            6688888877632 22112345678899999998633  56889999999999999999777765555688999999999


Q ss_pred             ccccc-cchhhhCCCCCCEEeccCCcCcc
Q 048080          118 NLSGH-IPQYLENLSFLSFLNLSYNHFEG  145 (223)
Q Consensus       118 ~l~~~-~p~~~~~l~~L~~l~l~~N~l~~  145 (223)
                      ++... .-+.+..+|+|+.|.+-+|+.+.
T Consensus        99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~  127 (233)
T KOG1644|consen   99 SIQELGDLDPLASCPKLEYLTLLGNPVEH  127 (233)
T ss_pred             chhhhhhcchhccCCccceeeecCCchhc
Confidence            98743 12347788999999999998864

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.20  E-value=2.1e-06  Score=48.71  Aligned_cols=39  Identities=36%  Similarity=0.598  Sum_probs=32.5

Q ss_pred             CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccc
Q 048080           83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH  122 (223)
Q Consensus        83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  122 (223)
                      ++|++|++++|+++ .+|..+.++++|+.|++++|+++..
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence            47999999999999 5566699999999999999999843

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.19  E-value=4.5e-07  Score=72.85  Aligned_cols=160  Identities=22%  Similarity=0.205  Sum_probs=83.5

Q ss_pred             CCCCCCCeeecccCccccCCChh------------hhhccCCceEEEccCCcccccC----CcCCCCCCCCCeEeccCcc
Q 048080            7 GNCQNLILLTTCKNKLSGTVPRQ------------LLRIITRSVLLDLFDNLLSGHF----PAEVGNLKHLVSLDISSNM   70 (223)
Q Consensus         7 ~~l~~L~~L~l~~n~i~~~~p~~------------~~~~~~~l~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~   70 (223)
                      ..++.|++|.|.+|.+...--..            .....+.|+.++..+|.+....    ...|...+.|+.+.++.|.
T Consensus       117 ~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~  196 (382)
T KOG1909|consen  117 SSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNG  196 (382)
T ss_pred             HhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccc
Confidence            34566677777776664211111            1122345566666666655221    1234555666777777666


Q ss_pred             cccc----CCccccCCCCCcEEEcccCccccc----CCccccCCCCCCEEECCCCccccccchh----hh-CCCCCCEEe
Q 048080           71 FSGE----IPTTLGGCTSLEHLSMQDNSFTGS----IPSTLSSLKSITELDLSRNNLSGHIPQY----LE-NLSFLSFLN  137 (223)
Q Consensus        71 l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p~~----~~-~l~~L~~l~  137 (223)
                      |...    ....|..+++|+.|||.+|-++..    ...++..++.|+.++++++.+...-..+    +. ..|+|..+.
T Consensus       197 I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~  276 (382)
T KOG1909|consen  197 IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLE  276 (382)
T ss_pred             ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceec
Confidence            5421    122455666777777777766532    2234555666777777776665432222    21 245667777


Q ss_pred             ccCCcCcccCCc-----hhhhcCCcceeecCCCC
Q 048080          138 LSYNHFEGKVPI-----EAIFNSTKGISLVGNEN  166 (223)
Q Consensus       138 l~~N~l~~~~~~-----~~~~~~l~~l~~~~n~~  166 (223)
                      +.+|.++..-..     ..-.+.+..+.+++|..
T Consensus       277 l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  277 LAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            777766532110     01134455566666654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.98  E-value=3.2e-05  Score=54.37  Aligned_cols=111  Identities=13%  Similarity=0.192  Sum_probs=72.8

Q ss_pred             CCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCcccc
Q 048080           25 TVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLS  104 (223)
Q Consensus        25 ~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  104 (223)
                      .+++..|.....|+.+.+.+ .+..+....|.++++|+.+.+..+ +..+....|.++.+++.+.+.+ .+.......|.
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~   78 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS   78 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred             EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence            46777788887889999885 567678889999999999999885 7767777899998999999976 55546667788


Q ss_pred             CCCCCCEEECCCCccccccchhhhCCCCCCEEeccC
Q 048080          105 SLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSY  140 (223)
Q Consensus       105 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~  140 (223)
                      .+++++.+++..+ +.......|... .++.+.+..
T Consensus        79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            8999999999876 665666677777 888888765

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.96  E-value=2.5e-05  Score=65.35  Aligned_cols=117  Identities=17%  Similarity=0.232  Sum_probs=71.4

Q ss_pred             CCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCc-cccccCCccccCCCCCc
Q 048080            8 NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSN-MFSGEIPTTLGGCTSLE   86 (223)
Q Consensus         8 ~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~   86 (223)
                      .+.+++.|++++|.++ .+|    ..+..|+.|.++++.--...|+.+  ..+|+.|++++| .+. ..|.      +|+
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe  115 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVR  115 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccc
Confidence            4678899999999888 888    356678999998854333566554  257889999887 444 3332      355


Q ss_pred             EEEcccCccc--ccCCccccCC------------------CCCCEEECCCCccccccchhhhCCCCCCEEeccCC
Q 048080           87 HLSMQDNSFT--GSIPSTLSSL------------------KSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN  141 (223)
Q Consensus        87 ~L~L~~N~l~--~~~~~~~~~l------------------~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N  141 (223)
                      .|+++.+...  +.+|..+..|                  ++|++|++++|... ..|..+.  .+|+.|+++.|
T Consensus       116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            5555554421  1233222211                  36777777777655 3333222  36777777655

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.81  E-value=9.4e-06  Score=72.70  Aligned_cols=135  Identities=23%  Similarity=0.225  Sum_probs=92.7

Q ss_pred             CCCCeeecccCccc-cCCChhhhhccCCceEEEccCCcccccC-CcCCCCCCCCCeEeccCccccccCCccccCCCCCcE
Q 048080           10 QNLILLTTCKNKLS-GTVPRQLLRIITRSVLLDLFDNLLSGHF-PAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEH   87 (223)
Q Consensus        10 ~~L~~L~l~~n~i~-~~~p~~~~~~~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   87 (223)
                      .+|++|++++...- ..-|..++..+|.|+.|.+.+-.+.... ..-..++++|..||+++.+++..  ..++.|++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            46888888876543 1344566777888899998887665221 23345778999999999988855  56778888888


Q ss_pred             EEcccCcccc-cCCccccCCCCCCEEECCCCcccccc--c----hhhhCCCCCCEEeccCCcCccc
Q 048080           88 LSMQDNSFTG-SIPSTLSSLKSITELDLSRNNLSGHI--P----QYLENLSFLSFLNLSYNHFEGK  146 (223)
Q Consensus        88 L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~--p----~~~~~l~~L~~l~l~~N~l~~~  146 (223)
                      |.+.+=.+.. ..-..+.++++|++||+|........  .    +.-..+|.|+.||.+++.+...
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            8877766552 11124667889999999876554221  1    1233578999999998877653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.69  E-value=2.5e-05  Score=61.34  Aligned_cols=141  Identities=20%  Similarity=0.180  Sum_probs=98.4

Q ss_pred             CCCCCCCCCCeeecccCccccCCChhhhh---ccCCceEEEccCCcccccCCcCC-------------CCCCCCCeEecc
Q 048080            4 PSLGNCQNLILLTTCKNKLSGTVPRQLLR---IITRSVLLDLFDNLLSGHFPAEV-------------GNLKHLVSLDIS   67 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~---~~~~l~~L~L~~n~l~~~~~~~~-------------~~l~~L~~L~l~   67 (223)
                      +++..|+.|+.++++.|.+..+.|+.+..   ....|..|.+++|.+..+-...+             .+-+.|++....
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            35678899999999999998777875543   34567889999998763322222             345778999999


Q ss_pred             CccccccCCc-----cccCCCCCcEEEcccCcccccCCc-----cccCCCCCCEEECCCCccccc----cchhhhCCCCC
Q 048080           68 SNMFSGEIPT-----TLGGCTSLEHLSMQDNSFTGSIPS-----TLSSLKSITELDLSRNNLSGH----IPQYLENLSFL  133 (223)
Q Consensus        68 ~n~l~~~~~~-----~~~~l~~L~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L  133 (223)
                      .|++.. .+.     .+..-..|+.+.+..|.+.-.-..     .+..+.+|++|||.+|-++..    ...++..++.|
T Consensus       166 rNRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l  244 (388)
T COG5238         166 RNRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL  244 (388)
T ss_pred             cchhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence            998873 222     233346788999998887622111     234457899999999988743    34566778888


Q ss_pred             CEEeccCCcCcc
Q 048080          134 SFLNLSYNHFEG  145 (223)
Q Consensus       134 ~~l~l~~N~l~~  145 (223)
                      +.|.+.++-++.
T Consensus       245 rEL~lnDClls~  256 (388)
T COG5238         245 RELRLNDCLLSN  256 (388)
T ss_pred             hhccccchhhcc
Confidence            999888887764

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.55  E-value=5e-05  Score=68.15  Aligned_cols=116  Identities=17%  Similarity=0.121  Sum_probs=86.1

Q ss_pred             CCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccc-cCCccccCCCCCc
Q 048080            8 NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSG-EIPTTLGGCTSLE   86 (223)
Q Consensus         8 ~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~   86 (223)
                      -+|+|+.|.+++-.+...--..++...++|..||+++.+++..  ..++.+++|+.|.+.+=.+.. ..-..+.+|++|+
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            4689999999998875322235667788999999999999844  556789999999888777653 1222567899999


Q ss_pred             EEEcccCcccccC------CccccCCCCCCEEECCCCccccccch
Q 048080           87 HLSMQDNSFTGSI------PSTLSSLKSITELDLSRNNLSGHIPQ  125 (223)
Q Consensus        87 ~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~~N~l~~~~p~  125 (223)
                      .||+|..+.....      -+.-..+|.|+.||.+++.+.+..-+
T Consensus       224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le  268 (699)
T KOG3665|consen  224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE  268 (699)
T ss_pred             eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence            9999988655221      12234589999999999988755433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.50  E-value=7.8e-05  Score=57.99  Aligned_cols=60  Identities=20%  Similarity=0.270  Sum_probs=25.3

Q ss_pred             CCCCeEeccCccccccCCccccCCCCCcEEEcccC--cccccCCccccCCCCCCEEECCCCccc
Q 048080           59 KHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDN--SFTGSIPSTLSSLKSITELDLSRNNLS  120 (223)
Q Consensus        59 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~  120 (223)
                      ..|+.+.+.+..++..  ..|..|++|+.|.+|.|  +..+..+.....+++|+++++++|++.
T Consensus        43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            3444444444443322  23344445555555555  333222222223345555555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.45  E-value=9.4e-05  Score=58.89  Aligned_cols=85  Identities=25%  Similarity=0.213  Sum_probs=48.5

Q ss_pred             CCCCeeecccCccccCCCh--hhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCc-cccCCCCCc
Q 048080           10 QNLILLTTCKNKLSGTVPR--QLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT-TLGGCTSLE   86 (223)
Q Consensus        10 ~~L~~L~l~~n~i~~~~p~--~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~   86 (223)
                      +.++.+|+.+|.|+ .-.+  .+...++.|++|+++.|.+...+..--..+.+|++|.|.+..+.-.... .+..++.++
T Consensus        71 ~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   71 TDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            45667777777776 3322  2334456667777777777633322113556677777766655432222 245566666


Q ss_pred             EEEcccCcc
Q 048080           87 HLSMQDNSF   95 (223)
Q Consensus        87 ~L~L~~N~l   95 (223)
                      .|++|.|++
T Consensus       150 elHmS~N~~  158 (418)
T KOG2982|consen  150 ELHMSDNSL  158 (418)
T ss_pred             hhhhccchh
Confidence            777776643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=3.9e-06  Score=66.51  Aligned_cols=87  Identities=17%  Similarity=0.181  Sum_probs=60.3

Q ss_pred             CCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcc-ccccCC-ccccCCCCCcEE
Q 048080           11 NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNM-FSGEIP-TTLGGCTSLEHL   88 (223)
Q Consensus        11 ~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L   88 (223)
                      .|+++|+++..|+..--..+......|+.|.+.++.+..-+...++.-.+|+.|+++++. ++.... -.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            488888888888744334555556667888888888876666667777788888888763 332211 135677888888


Q ss_pred             EcccCcccc
Q 048080           89 SMQDNSFTG   97 (223)
Q Consensus        89 ~L~~N~l~~   97 (223)
                      +++.+.++.
T Consensus       266 NlsWc~l~~  274 (419)
T KOG2120|consen  266 NLSWCFLFT  274 (419)
T ss_pred             CchHhhccc
Confidence            888887653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=4.7e-05  Score=60.54  Aligned_cols=88  Identities=28%  Similarity=0.358  Sum_probs=48.9

Q ss_pred             hccCCceEEEccCCcccc--cCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCc-cccCCCC
Q 048080           32 RIITRSVLLDLFDNLLSG--HFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPS-TLSSLKS  108 (223)
Q Consensus        32 ~~~~~l~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~  108 (223)
                      ...+.++++||.+|.|+.  .+...+.+|+.|++|+++.|.+...+..--..+.+|++|-|.+..+.+.-.. .+..+|.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            334555667777777662  2223345667777777777776643322112445667777666655533222 3455666


Q ss_pred             CCEEECCCCcc
Q 048080          109 ITELDLSRNNL  119 (223)
Q Consensus       109 L~~L~L~~N~l  119 (223)
                      ++.|.++.|.+
T Consensus       148 vtelHmS~N~~  158 (418)
T KOG2982|consen  148 VTELHMSDNSL  158 (418)
T ss_pred             hhhhhhccchh
Confidence            66666666633

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.29  E-value=0.0001  Score=57.28  Aligned_cols=100  Identities=23%  Similarity=0.283  Sum_probs=66.7

Q ss_pred             CCceEEEccCCcccccCCcCCCCCCCCCeEeccCc--cccccCCccccCCCCCcEEEcccCcccccCCcc---ccCCCCC
Q 048080           35 TRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSN--MFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPST---LSSLKSI  109 (223)
Q Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L  109 (223)
                      ..++.|.+.+..++..  ..|..|++|++|.++.|  .+.+-.+-....+++|+++++++|++..  +.+   +..+.+|
T Consensus        43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL  118 (260)
T KOG2739|consen   43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENL  118 (260)
T ss_pred             cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcch
Confidence            3445666666666522  34667888999999999  5554444444556899999999998872  333   3456678


Q ss_pred             CEEECCCCccccc---cchhhhCCCCCCEEec
Q 048080          110 TELDLSRNNLSGH---IPQYLENLSFLSFLNL  138 (223)
Q Consensus       110 ~~L~L~~N~l~~~---~p~~~~~l~~L~~l~l  138 (223)
                      ..|++.+|..+..   .-..|.-+++|++||-
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            8889988877642   2245667788877754

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.24  E-value=7.9e-06  Score=64.22  Aligned_cols=99  Identities=21%  Similarity=0.224  Sum_probs=56.5

Q ss_pred             CCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCC-ccccCCCCCcEE
Q 048080           10 QNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIP-TTLGGCTSLEHL   88 (223)
Q Consensus        10 ~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L   88 (223)
                      .+.+.|+..++.+. +|.  +...++.|+.|.|+-|.|+..-|  |..+++|++|+|..|.|..+.. ..+.++++|+.|
T Consensus        19 ~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34555666666665 442  45556666777777777764332  4566677777777776664322 134566666666


Q ss_pred             EcccCcccccCCc-----cccCCCCCCEEE
Q 048080           89 SMQDNSFTGSIPS-----TLSSLKSITELD  113 (223)
Q Consensus        89 ~L~~N~l~~~~~~-----~~~~l~~L~~L~  113 (223)
                      .|..|.-.+.-+.     .+.-+|+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            6666665544332     133445555554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.17  E-value=0.0021  Score=54.08  Aligned_cols=116  Identities=20%  Similarity=0.222  Sum_probs=72.9

Q ss_pred             cCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccC-cccccCCccccCCCCCCEE
Q 048080           34 ITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDN-SFTGSIPSTLSSLKSITEL  112 (223)
Q Consensus        34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  112 (223)
                      ...++.|++++|.+. .+| .  -..+|++|.++++.--...|+.+.  .+|+.|++++| .+. .+|.      +|+.|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP-~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L  117 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLP-V--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSL  117 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccC-C--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceE
Confidence            366799999999888 445 2  235799999988543336666553  68999999998 555 4554      46666


Q ss_pred             ECCCCccc--cccchhhhCC------------------CCCCEEeccCCcCcccCCchhhhcCCcceeecCC
Q 048080          113 DLSRNNLS--GHIPQYLENL------------------SFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN  164 (223)
Q Consensus       113 ~L~~N~l~--~~~p~~~~~l------------------~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n  164 (223)
                      ++.+|...  +.+|..+..+                  ++|+.|++++|.... .|. ....+++.+.+..+
T Consensus       118 ~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~-~LP~SLk~L~ls~n  187 (426)
T PRK15386        118 EIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPE-KLPESLQSITLHIE  187 (426)
T ss_pred             EeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Ccc-cccccCcEEEeccc
Confidence            67665532  2344433332                  368888888877542 221 23355666665443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=5.9e-05  Score=60.00  Aligned_cols=134  Identities=20%  Similarity=0.175  Sum_probs=69.9

Q ss_pred             CCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCC--cCCCCCCCCCeEeccCccccccCCcc-ccCC-
Q 048080            7 GNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFP--AEVGNLKHLVSLDISSNMFSGEIPTT-LGGC-   82 (223)
Q Consensus         7 ~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l-   82 (223)
                      ..+.+|+.|.+.++++.+.+-..+... ..|+.|+++.+.--....  -.+..++.|+.|+++.+.+....-.. ..+. 
T Consensus       207 s~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his  285 (419)
T KOG2120|consen  207 SQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS  285 (419)
T ss_pred             HHHHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence            456788899999998876555555443 445889988864221221  13567788888888888765322111 1111 


Q ss_pred             CCCcEEEcccCc--ccccCCcc-ccCCCCCCEEECCCCc-cccccchhhhCCCCCCEEeccCC
Q 048080           83 TSLEHLSMQDNS--FTGSIPST-LSSLKSITELDLSRNN-LSGHIPQYLENLSFLSFLNLSYN  141 (223)
Q Consensus        83 ~~L~~L~L~~N~--l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~l~l~~N  141 (223)
                      +.|..|++++..  +....-++ -...++|.+|||++|. ++...-..|..++.|+++.++.+
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC  348 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC  348 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence            345555555432  11111111 1234555555555432 33222233444555555555444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=3.7e-05  Score=60.59  Aligned_cols=100  Identities=24%  Similarity=0.236  Sum_probs=76.1

Q ss_pred             cCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCC-ccccCCCCCCEE
Q 048080           34 ITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIP-STLSSLKSITEL  112 (223)
Q Consensus        34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L  112 (223)
                      +.+...|+.-++.++.+-  ....|+.|+.|.|+-|.|+..  ..|..+.+|+.|+|..|.|...-. ..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            445577888888877432  235789999999999999866  347889999999999999873311 246789999999


Q ss_pred             ECCCCccccccc-----hhhhCCCCCCEEe
Q 048080          113 DLSRNNLSGHIP-----QYLENLSFLSFLN  137 (223)
Q Consensus       113 ~L~~N~l~~~~p-----~~~~~l~~L~~l~  137 (223)
                      .|..|.-.|.-+     ..+..+|+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            999998876644     3466788888876

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.46  E-value=0.0016  Score=30.84  Aligned_cols=18  Identities=50%  Similarity=0.717  Sum_probs=8.7

Q ss_pred             CCEEECCCCccccccchhh
Q 048080          109 ITELDLSRNNLSGHIPQYL  127 (223)
Q Consensus       109 L~~L~L~~N~l~~~~p~~~  127 (223)
                      |++||+++|+++ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            445555555555 344333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.36  E-value=0.0033  Score=30.99  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=18.7

Q ss_pred             CCCCCeeecccCccccCCChhhhh
Q 048080            9 CQNLILLTTCKNKLSGTVPRQLLR   32 (223)
Q Consensus         9 l~~L~~L~l~~n~i~~~~p~~~~~   32 (223)
                      +++|+.|++++|++. .+|++.|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            467888999999988 88887765

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.36  E-value=0.0033  Score=30.99  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=18.7

Q ss_pred             CCCCCeeecccCccccCCChhhhh
Q 048080            9 CQNLILLTTCKNKLSGTVPRQLLR   32 (223)
Q Consensus         9 l~~L~~L~l~~n~i~~~~p~~~~~   32 (223)
                      +++|+.|++++|++. .+|++.|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            467888999999988 88887765

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.26  E-value=0.002  Score=30.51  Aligned_cols=19  Identities=53%  Similarity=0.770  Sum_probs=9.4

Q ss_pred             CcEEEcccCcccccCCcccc
Q 048080           85 LEHLSMQDNSFTGSIPSTLS  104 (223)
Q Consensus        85 L~~L~L~~N~l~~~~~~~~~  104 (223)
                      |++||+++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 3343343

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF15102 TMEM154: TMEM154 protein family

Probab=95.86  E-value=0.01  Score=42.13  Aligned_cols=32  Identities=31%  Similarity=0.708  Sum_probs=15.2

Q ss_pred             eeehhHHHHHH-HHHHHHHHHHHHHHhccCccc
Q 048080          179 LIKVVIQVIVL-CLILVVFFIVVYGRRRRSTQK  210 (223)
Q Consensus       179 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  210 (223)
                      ++.++|+.+++ ++++++++++.++||||.+++
T Consensus        58 iLmIlIP~VLLvlLLl~vV~lv~~~kRkr~K~~   90 (146)
T PF15102_consen   58 ILMILIPLVLLVLLLLSVVCLVIYYKRKRTKQE   90 (146)
T ss_pred             EEEEeHHHHHHHHHHHHHHHheeEEeecccCCC
Confidence            55555553333 334444444444455555444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.63  E-value=0.00016  Score=55.71  Aligned_cols=81  Identities=19%  Similarity=0.220  Sum_probs=50.0

Q ss_pred             ceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCC
Q 048080           37 SVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR  116 (223)
Q Consensus        37 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  116 (223)
                      .+.||++.|.+. .....|.-++.+..|+++.|.+. ..|..+..+..+..+++..|.++ ..|.+++..+.++++++-+
T Consensus        44 ~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~  120 (326)
T KOG0473|consen   44 VTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK  120 (326)
T ss_pred             eeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence            356666666655 34445555666666666666665 55666666666666666666666 5566666666666666666


Q ss_pred             Cccc
Q 048080          117 NNLS  120 (223)
Q Consensus       117 N~l~  120 (223)
                      |.+.
T Consensus       121 ~~~~  124 (326)
T KOG0473|consen  121 TEFF  124 (326)
T ss_pred             Ccch
Confidence            6654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.48  E-value=0.0087  Score=26.33  Aligned_cols=17  Identities=35%  Similarity=0.597  Sum_probs=8.1

Q ss_pred             CCCCeeecccCccccCCC
Q 048080           10 QNLILLTTCKNKLSGTVP   27 (223)
Q Consensus        10 ~~L~~L~l~~n~i~~~~p   27 (223)
                      ++|+.|++++|+++ ++|
T Consensus         1 ~~L~~L~l~~n~L~-~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT-SLP   17 (17)
T ss_dssp             TT-SEEEETSS--S-SE-
T ss_pred             CccCEEECCCCCCC-CCc
Confidence            35666777777665 544

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.37  E-value=0.016  Score=46.04  Aligned_cols=110  Identities=23%  Similarity=0.247  Sum_probs=56.9

Q ss_pred             CCceEEEccCCcccccCCcC----CCCCCCCCeEeccCccccccCCccc-------------cCCCCCcEEEcccCcccc
Q 048080           35 TRSVLLDLFDNLLSGHFPAE----VGNLKHLVSLDISSNMFSGEIPTTL-------------GGCTSLEHLSMQDNSFTG   97 (223)
Q Consensus        35 ~~l~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~-------------~~l~~L~~L~L~~N~l~~   97 (223)
                      +.++..+||+|.+....|..    ++.-+.|.+|.|++|.+.-+....+             .+-+.|++.....|++..
T Consensus        92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen  171 (388)
T COG5238          92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN  171 (388)
T ss_pred             CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence            44566666666665444432    2344556666666665542211111             123456666666666542


Q ss_pred             cCCc-----cccCCCCCCEEECCCCccccc-----cchhhhCCCCCCEEeccCCcCcc
Q 048080           98 SIPS-----TLSSLKSITELDLSRNNLSGH-----IPQYLENLSFLSFLNLSYNHFEG  145 (223)
Q Consensus        98 ~~~~-----~~~~l~~L~~L~L~~N~l~~~-----~p~~~~~l~~L~~l~l~~N~l~~  145 (223)
                       .+.     .|..-..|+.+.+..|.+...     .--.+..+.+|+.||+.+|-++-
T Consensus       172 -gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~  228 (388)
T COG5238         172 -GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             -CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence             111     122223566666666666522     11123456788888888888764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.17  E-value=0.00039  Score=53.59  Aligned_cols=89  Identities=19%  Similarity=0.237  Sum_probs=55.8

Q ss_pred             cCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCC
Q 048080           53 AEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF  132 (223)
Q Consensus        53 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  132 (223)
                      ..+......+.||++.|++. .....|+-+..+..||++.|.+. ..|..++....+..+++..|..+ ..|.++...+.
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence            33445556666677766665 34445666666666777766666 55555666666666666666666 55666666666


Q ss_pred             CCEEeccCCcCc
Q 048080          133 LSFLNLSYNHFE  144 (223)
Q Consensus       133 L~~l~l~~N~l~  144 (223)
                      ++.++..+|++.
T Consensus       113 ~k~~e~k~~~~~  124 (326)
T KOG0473|consen  113 PKKNEQKKTEFF  124 (326)
T ss_pred             cchhhhccCcch
Confidence            776666666653

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=95.14  E-value=0.011  Score=32.22  Aligned_cols=12  Identities=33%  Similarity=0.515  Sum_probs=4.8

Q ss_pred             eehhHHHHHHHH
Q 048080          180 IKVVIQVIVLCL  191 (223)
Q Consensus       180 ~~~~~~~~~~~~  191 (223)
                      .+++++++++++
T Consensus        15 ~~VvVPV~vI~~   26 (40)
T PF08693_consen   15 VGVVVPVGVIII   26 (40)
T ss_pred             EEEEechHHHHH
Confidence            334444444333

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=95.10  E-value=0.019  Score=39.84  Aligned_cols=28  Identities=14%  Similarity=0.300  Sum_probs=9.9

Q ss_pred             eehhHHHHHHHHHHHHHHHHHHHHhccC
Q 048080          180 IKVVIQVIVLCLILVVFFIVVYGRRRRS  207 (223)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (223)
                      .++++++++.+++++++++++.+|+||+
T Consensus        67 ~~Ii~gv~aGvIg~Illi~y~irR~~Kk   94 (122)
T PF01102_consen   67 IGIIFGVMAGVIGIILLISYCIRRLRKK   94 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             eehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3344444444333333333333333333

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=94.93  E-value=0.05  Score=29.15  Aligned_cols=15  Identities=20%  Similarity=0.558  Sum_probs=6.0

Q ss_pred             ehhHHHHHHHHHHHH
Q 048080          181 KVVIQVIVLCLILVV  195 (223)
Q Consensus       181 ~~~~~~~~~~~~~~~  195 (223)
                      ++++++++.++++++
T Consensus         7 aIIv~V~vg~~iiii   21 (38)
T PF02439_consen    7 AIIVAVVVGMAIIII   21 (38)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            344444443333333

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.58  E-value=0.034  Score=27.20  Aligned_cols=16  Identities=50%  Similarity=0.644  Sum_probs=9.4

Q ss_pred             CCCCEEECCCCccccc
Q 048080          107 KSITELDLSRNNLSGH  122 (223)
Q Consensus       107 ~~L~~L~L~~N~l~~~  122 (223)
                      ++|++|+|++|+++..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566666666666643

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.58  E-value=0.034  Score=27.20  Aligned_cols=16  Identities=50%  Similarity=0.644  Sum_probs=9.4

Q ss_pred             CCCCEEECCCCccccc
Q 048080          107 KSITELDLSRNNLSGH  122 (223)
Q Consensus       107 ~~L~~L~L~~N~l~~~  122 (223)
                      ++|++|+|++|+++..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566666666666643

>TIGR00864 PCC polycystin cation channel protein

Probab=94.18  E-value=0.031  Score=56.61  Aligned_cols=39  Identities=33%  Similarity=0.314  Sum_probs=27.0

Q ss_pred             ECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchh
Q 048080          113 DLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEA  151 (223)
Q Consensus       113 ~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~  151 (223)
                      ||++|+|+.+.+..|..+++|+.|+|++|++.|.|...+
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~W   39 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLAR   39 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHH
Confidence            466777776666667777777777777777777776554

Note: this model has been restricted to the amino half because for technical reasons.

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=94.02  E-value=0.07  Score=40.43  Aligned_cols=27  Identities=26%  Similarity=0.611  Sum_probs=11.6

Q ss_pred             ceeeehhHHHHHHHHHHHHHHHHHHHH
Q 048080          177 SILIKVVIQVIVLCLILVVFFIVVYGR  203 (223)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (223)
                      .++++++.++++++++++++.++.+||
T Consensus        38 ~I~iaiVAG~~tVILVI~i~v~vR~CR   64 (221)
T PF08374_consen   38 KIMIAIVAGIMTVILVIFIVVLVRYCR   64 (221)
T ss_pred             eeeeeeecchhhhHHHHHHHHHHHHHh
Confidence            344444444444444444444443344

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>TIGR01478 STEVOR variant surface antigen, stevor family

Probab=94.00  E-value=0.07  Score=42.22  Aligned_cols=29  Identities=17%  Similarity=0.397  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCccccc
Q 048080          184 IQVIVLCLILVVFFIVVYGRRRRSTQKSS  212 (223)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (223)
                      +.|..+++++++++.+|.+||||+..+..
T Consensus       265 alvllil~vvliiLYiWlyrrRK~swkhe  293 (295)
T TIGR01478       265 ALVLIILTVVLIILYIWLYRRRKKSWKHE  293 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            33333444444455566666666666543

This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=93.62  E-value=0.026  Score=40.40  Aligned_cols=31  Identities=26%  Similarity=0.398  Sum_probs=16.2

Q ss_pred             ceeeehhHHHHHHHHHHHHHHHHHHHHhccC
Q 048080          177 SILIKVVIQVIVLCLILVVFFIVVYGRRRRS  207 (223)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (223)
                      ..++++++++.+.++++++++++++++|+|+
T Consensus        49 nIVIGvVVGVGg~ill~il~lvf~~c~r~kk   79 (154)
T PF04478_consen   49 NIVIGVVVGVGGPILLGILALVFIFCIRRKK   79 (154)
T ss_pred             cEEEEEEecccHHHHHHHHHhheeEEEeccc
Confidence            4566777766555554444444444444443

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PTZ00370 STEVOR; Provisional

Probab=93.10  E-value=0.075  Score=42.15  Aligned_cols=26  Identities=19%  Similarity=0.465  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCcccc
Q 048080          186 VIVLCLILVVFFIVVYGRRRRSTQKS  211 (223)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (223)
                      |..+++++++++.+|.+||||+..+.
T Consensus       263 vllil~vvliilYiwlyrrRK~swkh  288 (296)
T PTZ00370        263 VLLILAVVLIILYIWLYRRRKNSWKH  288 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHH
Confidence            33334444445555666666666554

>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world

Probab=92.90  E-value=0.068  Score=43.21  Aligned_cols=17  Identities=18%  Similarity=0.516  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHhccCc
Q 048080          192 ILVVFFIVVYGRRRRST  208 (223)
Q Consensus       192 ~~~~~~~~~~~~~~~~~  208 (223)
                      ++++++++++|+|||++
T Consensus       270 LIMvIIYLILRYRRKKK  286 (299)
T PF02009_consen  270 LIMVIIYLILRYRRKKK  286 (299)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            33334444444444333

Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].

>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5

Probab=92.05  E-value=0.044  Score=43.98  Aligned_cols=27  Identities=19%  Similarity=0.418  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCcc
Q 048080          183 VIQVIVLCLILVVFFIVVYGRRRRSTQ  209 (223)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (223)
                      +++++++++++++++++||+|||+-+.
T Consensus       152 aVVI~~iLLIA~iIa~icyrrkR~GK~  178 (290)
T PF05454_consen  152 AVVIAAILLIAGIIACICYRRKRKGKM  178 (290)
T ss_dssp             ---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence            333344444444455555554444433

5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.

>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2

Probab=91.74  E-value=0.29  Score=31.46  Aligned_cols=29  Identities=24%  Similarity=0.410  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCccccc
Q 048080          184 IQVIVLCLILVVFFIVVYGRRRRSTQKSS  212 (223)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (223)
                      ..++++++++++++++.++++||+.+++-
T Consensus        37 ~lvI~~iFil~VilwfvCC~kRkrsRrPI   65 (94)
T PF05393_consen   37 FLVICGIFILLVILWFVCCKKRKRSRRPI   65 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCc
Confidence            33444444555555555555555555443

; GO: 0016021 integral to membrane

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.59  E-value=0.073  Score=25.45  Aligned_cols=14  Identities=36%  Similarity=0.657  Sum_probs=6.1

Q ss_pred             CCCEEECCCCcccc
Q 048080          108 SITELDLSRNNLSG  121 (223)
Q Consensus       108 ~L~~L~L~~N~l~~  121 (223)
                      +|++|+|++|.++.
T Consensus         3 ~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    3 NLETLDLSNNQITD   16 (24)
T ss_dssp             T-SEEE-TSSBEHH
T ss_pred             CCCEEEccCCcCCH
Confidence            45555555555543

...

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=91.31  E-value=0.11  Score=34.67  Aligned_cols=11  Identities=9%  Similarity=0.356  Sum_probs=4.8

Q ss_pred             eeeehhHHHHH
Q 048080          178 ILIKVVIQVIV  188 (223)
Q Consensus       178 ~~~~~~~~~~~  188 (223)
                      .+.++++++++
T Consensus        67 aiagi~vg~~~   77 (96)
T PTZ00382         67 AIAGISVAVVA   77 (96)
T ss_pred             cEEEEEeehhh
Confidence            34444444443

>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear

Probab=91.16  E-value=0.14  Score=41.75  Aligned_cols=38  Identities=24%  Similarity=0.484  Sum_probs=17.0

Q ss_pred             CCCCCCCCCCCCcceeeehhHHHHHHHHHHHHHHHHHHHHh
Q 048080          164 NENLCGGSRKSKFSILIKVVIQVIVLCLILVVFFIVVYGRR  204 (223)
Q Consensus       164 n~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (223)
                      ....|.....   ..++.+++|++.+++++++++++++.||
T Consensus       260 ~a~~C~~D~~---~~~vPIaVG~~La~lvlivLiaYli~Rr  297 (306)
T PF01299_consen  260 TAEECSSDDT---SDLVPIAVGAALAGLVLIVLIAYLIGRR  297 (306)
T ss_pred             ChhcCCcCCc---cchHHHHHHHHHHHHHHHHHHhheeEec
Confidence            3445554332   3455555555544444444444333333

Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane

>PTZ00046 rifin; Provisional

Probab=89.78  E-value=0.24  Score=40.80  Aligned_cols=18  Identities=22%  Similarity=0.477  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHhccCccc
Q 048080          193 LVVFFIVVYGRRRRSTQK  210 (223)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~  210 (223)
                      +++++++..|+|||++.+
T Consensus       330 IMvIIYLILRYRRKKKMk  347 (358)
T PTZ00046        330 IMVIIYLILRYRRKKKMK  347 (358)
T ss_pred             HHHHHHHHHHhhhcchhH
Confidence            334444444555554433

>TIGR01477 RIFIN variant surface antigen, rifin family

Probab=89.61  E-value=0.25  Score=40.57  Aligned_cols=17  Identities=18%  Similarity=0.442  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHhccCcc
Q 048080          193 LVVFFIVVYGRRRRSTQ  209 (223)
Q Consensus       193 ~~~~~~~~~~~~~~~~~  209 (223)
                      +++++++..|+|||++.
T Consensus       325 IMvIIYLILRYRRKKKM  341 (353)
T TIGR01477       325 IMVIIYLILRYRRKKKM  341 (353)
T ss_pred             HHHHHHHHHHhhhcchh
Confidence            33444444455554443

This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.

>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P

Probab=88.96  E-value=0.089  Score=35.57  Aligned_cols=23  Identities=22%  Similarity=0.468  Sum_probs=0.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Q 048080          184 IQVIVLCLILVVFFIVVYGRRRR  206 (223)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~  206 (223)
                      |+++++++.+++++-+||+|||.
T Consensus        29 IGiL~VILgiLLliGCWYckRRS   51 (118)
T PF14991_consen   29 IGILIVILGILLLIGCWYCKRRS   51 (118)
T ss_dssp             SS---------------------
T ss_pred             ceeHHHHHHHHHHHhheeeeecc
Confidence            44444445555566666666653

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=88.86  E-value=0.33  Score=23.87  Aligned_cols=14  Identities=36%  Similarity=0.394  Sum_probs=9.1

Q ss_pred             CCCCeeecccCccc
Q 048080           10 QNLILLTTCKNKLS   23 (223)
Q Consensus        10 ~~L~~L~l~~n~i~   23 (223)
                      ++|+.|++++|+|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            45666666666665

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.66  E-value=0.033  Score=42.13  Aligned_cols=83  Identities=22%  Similarity=0.155  Sum_probs=50.0

Q ss_pred             CCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccC-Ccccc-CCCCCCEEECCCC-ccccccchhhhCCCCCCE
Q 048080           59 KHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI-PSTLS-SLKSITELDLSRN-NLSGHIPQYLENLSFLSF  135 (223)
Q Consensus        59 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~-~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~  135 (223)
                      ..++.++-++..|..+.-+.+.++++++.|.+.++.--+-. -+.++ ..++|+.|++++| +||..--..+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            34667777777777666666777777777777666432110 01111 2367888888865 455444445666777777


Q ss_pred             EeccCC
Q 048080          136 LNLSYN  141 (223)
Q Consensus       136 l~l~~N  141 (223)
                      |.+.+=
T Consensus       181 L~l~~l  186 (221)
T KOG3864|consen  181 LHLYDL  186 (221)
T ss_pred             HHhcCc
Confidence            766553

>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT

Probab=87.72  E-value=1.2  Score=30.21  Aligned_cols=8  Identities=38%  Similarity=0.592  Sum_probs=2.8

Q ss_pred             HHHHHHHH
Q 048080          188 VLCLILVV  195 (223)
Q Consensus       188 ~~~~~~~~  195 (223)
                      ++++++.+
T Consensus         8 ~llLll~l   15 (107)
T PF15330_consen    8 ALLLLLSL   15 (107)
T ss_pred             HHHHHHHH
Confidence            33333333

>PF15050 SCIMP: SCIMP protein

Probab=87.37  E-value=0.72  Score=31.58  Aligned_cols=13  Identities=15%  Similarity=0.526  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHHHH
Q 048080          186 VIVLCLILVVFFI  198 (223)
Q Consensus       186 ~~~~~~~~~~~~~  198 (223)
                      ++++.+++.++++
T Consensus        16 II~vS~~lglIly   28 (133)
T PF15050_consen   16 IILVSVVLGLILY   28 (133)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=87.31  E-value=0.22  Score=30.16  Aligned_cols=7  Identities=29%  Similarity=0.748  Sum_probs=0.4

Q ss_pred             HHHHHHh
Q 048080          198 IVVYGRR  204 (223)
Q Consensus       198 ~~~~~~~  204 (223)
                      +++|+.|
T Consensus        31 f~iyR~r   37 (64)
T PF01034_consen   31 FLIYRMR   37 (64)
T ss_dssp             ------S
T ss_pred             HHHHHHH
Confidence            3333333

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=87.00  E-value=0.42  Score=23.49  Aligned_cols=18  Identities=28%  Similarity=0.506  Sum_probs=12.9

Q ss_pred             CCCCeeecccCccccCCCh
Q 048080           10 QNLILLTTCKNKLSGTVPR   28 (223)
Q Consensus        10 ~~L~~L~l~~n~i~~~~p~   28 (223)
                      ++|+.|+.++|+++ ++|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            35677777777777 7775

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=86.38  E-value=0.21  Score=42.77  Aligned_cols=129  Identities=26%  Similarity=0.177  Sum_probs=63.3

Q ss_pred             CCCCCeeecccCccccCCC-hhhhhccCCceEEEccCC-cccccCC----cCCCCCCCCCeEeccCcc-ccccCCcccc-
Q 048080            9 CQNLILLTTCKNKLSGTVP-RQLLRIITRSVLLDLFDN-LLSGHFP----AEVGNLKHLVSLDISSNM-FSGEIPTTLG-   80 (223)
Q Consensus         9 l~~L~~L~l~~n~i~~~~p-~~~~~~~~~l~~L~L~~n-~l~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-   80 (223)
                      ++.|+.+.+....-..... ..+....+.|++|+++++ ......+    .....+.+|+.|+++++. ++...-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            4566666666553221211 123444566677777763 1111111    122345677777777776 4433222222 


Q ss_pred             CCCCCcEEEcccCc-ccccCCc-cccCCCCCCEEECCCCccccc--cchhhhCCCCCCEEe
Q 048080           81 GCTSLEHLSMQDNS-FTGSIPS-TLSSLKSITELDLSRNNLSGH--IPQYLENLSFLSFLN  137 (223)
Q Consensus        81 ~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~l~  137 (223)
                      .+++|+.|.+.++. ++..--. ....++.|++|+++++...+.  +......+++++.+.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~  327 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK  327 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence            26677777766555 4422111 123456678888776654311  222233455554443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=85.68  E-value=0.0057  Score=52.84  Aligned_cols=141  Identities=29%  Similarity=0.282  Sum_probs=69.8

Q ss_pred             CCCCCCCCCeeecccCccccCCChhhh---hc-cCCceEEEccCCcccccC----CcCCCCCCCCCeEeccCccccc---
Q 048080            5 SLGNCQNLILLTTCKNKLSGTVPRQLL---RI-ITRSVLLDLFDNLLSGHF----PAEVGNLKHLVSLDISSNMFSG---   73 (223)
Q Consensus         5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~---~~-~~~l~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~---   73 (223)
                      ++.....|+.|++++|.+.+.--..+.   .. ...+++|++..|.++..-    ...+.....++.++++.|.+..   
T Consensus       110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~  189 (478)
T KOG4308|consen  110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL  189 (478)
T ss_pred             HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence            445566677777777777531111111   11 133455666666555322    2233445667777777776631   


Q ss_pred             -cCCccc----cCCCCCcEEEcccCcccccCC----ccccCCCC-CCEEECCCCccccc----cchhhhCC-CCCCEEec
Q 048080           74 -EIPTTL----GGCTSLEHLSMQDNSFTGSIP----STLSSLKS-ITELDLSRNNLSGH----IPQYLENL-SFLSFLNL  138 (223)
Q Consensus        74 -~~~~~~----~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~-L~~L~L~~N~l~~~----~p~~~~~l-~~L~~l~l  138 (223)
                       ..+..+    ....++++|.++++.++....    ..+...++ +..+++.+|++...    ....+..+ ..++.+++
T Consensus       190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l  269 (478)
T KOG4308|consen  190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL  269 (478)
T ss_pred             HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence             111222    235567777777776652111    12233333 45566666666532    12223333 45566666


Q ss_pred             cCCcCcc
Q 048080          139 SYNHFEG  145 (223)
Q Consensus       139 ~~N~l~~  145 (223)
                      +.|.+..
T Consensus       270 ~~nsi~~  276 (478)
T KOG4308|consen  270 SRNSITE  276 (478)
T ss_pred             hcCCccc
Confidence            6666654

>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses

Probab=85.66  E-value=2.7  Score=25.63  Aligned_cols=14  Identities=21%  Similarity=0.456  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHHH
Q 048080          190 CLILVVFFIVVYGR  203 (223)
Q Consensus       190 ~~~~~~~~~~~~~~  203 (223)
                      ++++++++..+|.|
T Consensus        12 Vaii~lIlY~iYnr   25 (68)
T PF05961_consen   12 VAIIGLILYGIYNR   25 (68)
T ss_pred             HHHHHHHHHHHHhc
Confidence            33333344444433

A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].

>PHA03265 envelope glycoprotein D; Provisional

Probab=84.99  E-value=0.51  Score=38.56  Aligned_cols=27  Identities=11%  Similarity=0.298  Sum_probs=10.5

Q ss_pred             eeehhHHHHH-HHHHHHHHHHHHHHHhc
Q 048080          179 LIKVVIQVIV-LCLILVVFFIVVYGRRR  205 (223)
Q Consensus       179 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~  205 (223)
                      .++++++..+ .++++.++++++|+||+
T Consensus       349 ~~g~~ig~~i~glv~vg~il~~~~rr~k  376 (402)
T PHA03265        349 FVGISVGLGIAGLVLVGVILYVCLRRKK  376 (402)
T ss_pred             ccceEEccchhhhhhhhHHHHHHhhhhh
Confidence            3344443333 33333344444444433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=84.66  E-value=0.26  Score=42.24  Aligned_cols=111  Identities=23%  Similarity=0.151  Sum_probs=65.9

Q ss_pred             cCCceEEEccCCccccc--CCcCCCCCCCCCeEeccCc-cccccCC----ccccCCCCCcEEEcccCc-ccccCCccccC
Q 048080           34 ITRSVLLDLFDNLLSGH--FPAEVGNLKHLVSLDISSN-MFSGEIP----TTLGGCTSLEHLSMQDNS-FTGSIPSTLSS  105 (223)
Q Consensus        34 ~~~l~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~~----~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~  105 (223)
                      .+.++.+.+.++.--..  ........+.|+.|+++++ ......+    .....+.+|+.+++++.. ++...-..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45566676666532212  1233456788999998873 1111111    233456788889998887 55332223332


Q ss_pred             -CCCCCEEECCCCc-cccc-cchhhhCCCCCCEEeccCCcCc
Q 048080          106 -LKSITELDLSRNN-LSGH-IPQYLENLSFLSFLNLSYNHFE  144 (223)
Q Consensus       106 -l~~L~~L~L~~N~-l~~~-~p~~~~~l~~L~~l~l~~N~l~  144 (223)
                       +++|+.|.+.++. ++.. +-.....++.|++|+++++...
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence             6789999877766 5533 2233456788999999876653

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=83.91  E-value=0.012  Score=50.89  Aligned_cols=134  Identities=25%  Similarity=0.228  Sum_probs=78.2

Q ss_pred             CCCeeecccCcccc----CCChhhhhccCCceEEEccCCcccc--------cCCcCCCCCCCCCeEeccCccccccCC--
Q 048080           11 NLILLTTCKNKLSG----TVPRQLLRIITRSVLLDLFDNLLSG--------HFPAEVGNLKHLVSLDISSNMFSGEIP--   76 (223)
Q Consensus        11 ~L~~L~l~~n~i~~----~~p~~~~~~~~~l~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~--   76 (223)
                      .+++|++..+.+++    .+.+.+.. ...++.++++.|.+..        ..+..+....++++|.++++.++...-  
T Consensus       145 ~l~~L~l~~c~l~~~g~~~l~~~L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~  223 (478)
T KOG4308|consen  145 LLQTLELVSCSLTSEGAAPLAAVLEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL  223 (478)
T ss_pred             HHHHHHhhcccccccchHHHHHHHhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence            34556666666553    23333444 4555677777776631        111223346778888888887763211  


Q ss_pred             --ccccCCCC-CcEEEcccCccccc----CCccccCC-CCCCEEECCCCcccccc----chhhhCCCCCCEEeccCCcCc
Q 048080           77 --TTLGGCTS-LEHLSMQDNSFTGS----IPSTLSSL-KSITELDLSRNNLSGHI----PQYLENLSFLSFLNLSYNHFE  144 (223)
Q Consensus        77 --~~~~~l~~-L~~L~L~~N~l~~~----~~~~~~~l-~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~l~l~~N~l~  144 (223)
                        ..+...+. +..+++..|.+...    ....+..+ ..+++++++.|.++..-    ...+..++.++.+.++.|++.
T Consensus       224 l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  224 LDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence              12333444 66688888877633    11224444 56788888888887543    344556677888888888876


Q ss_pred             c
Q 048080          145 G  145 (223)
Q Consensus       145 ~  145 (223)
                      .
T Consensus       304 ~  304 (478)
T KOG4308|consen  304 D  304 (478)
T ss_pred             c
Confidence            4

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=82.99  E-value=0.96  Score=34.46  Aligned_cols=34  Identities=24%  Similarity=0.291  Sum_probs=25.6

Q ss_pred             cceeeehhHHHHHHHHHHHHHHHHHHHHhccCcc
Q 048080          176 FSILIKVVIQVIVLCLILVVFFIVVYGRRRRSTQ  209 (223)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (223)
                      ...+.+++.++++++.+++++++++++|++|.+.
T Consensus        34 ~d~~~I~iaiVAG~~tVILVI~i~v~vR~CRq~~   67 (221)
T PF08374_consen   34 KDYVKIMIAIVAGIMTVILVIFIVVLVRYCRQSP   67 (221)
T ss_pred             ccceeeeeeeecchhhhHHHHHHHHHHHHHhhcc
Confidence            4577777777777788888888888887788544

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=82.78  E-value=3.2  Score=33.51  Aligned_cols=12  Identities=33%  Similarity=0.545  Sum_probs=5.1

Q ss_pred             CCCCCeeecccC
Q 048080            9 CQNLILLTTCKN   20 (223)
Q Consensus         9 l~~L~~L~l~~n   20 (223)
                      |+.+-..+....
T Consensus        15 C~~lC~yd~~~~   26 (281)
T PF12768_consen   15 CPGLCLYDTDNS   26 (281)
T ss_pred             CCEEEEEECCCC
Confidence            444444444333

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.34  E-value=0.21  Score=37.91  Aligned_cols=81  Identities=20%  Similarity=0.190  Sum_probs=51.6

Q ss_pred             CceEEEccCCcccccCCcCCCCCCCCCeEeccCccccc-cCCcccc-CCCCCcEEEcccC-cccccCCccccCCCCCCEE
Q 048080           36 RSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSG-EIPTTLG-GCTSLEHLSMQDN-SFTGSIPSTLSSLKSITEL  112 (223)
Q Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  112 (223)
                      .++.+|-++..|..+--..+.+++.++.|.+.++.--+ -.-+.++ -.++|+.|++++| +||..--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            34778888888776555566777788888777764221 1011111 2468899999977 5664444456667777777


Q ss_pred             ECCC
Q 048080          113 DLSR  116 (223)
Q Consensus       113 ~L~~  116 (223)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            7765

>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A

Probab=81.92  E-value=0.42  Score=30.24  Aligned_cols=10  Identities=0%  Similarity=0.009  Sum_probs=2.8

Q ss_pred             HHHHHHHHhc
Q 048080          196 FFIVVYGRRR  205 (223)
Q Consensus       196 ~~~~~~~~~~  205 (223)
                      ++++..++++
T Consensus        20 ~~~~~rr~~~   29 (75)
T PF14575_consen   20 VIVCFRRCKY   29 (75)
T ss_dssp             HHCCCTT---
T ss_pred             EEEEEeeEcC
Confidence            3333344443

...

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=81.51  E-value=0.78  Score=40.03  Aligned_cols=61  Identities=25%  Similarity=0.228  Sum_probs=31.9

Q ss_pred             CCCcEEEcccCcccccCCccc----cCCCCCCEEECCCC--ccccccc-hhhhCCCCCCEEeccCCcCccc
Q 048080           83 TSLEHLSMQDNSFTGSIPSTL----SSLKSITELDLSRN--NLSGHIP-QYLENLSFLSFLNLSYNHFEGK  146 (223)
Q Consensus        83 ~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~L~~N--~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~  146 (223)
                      +.+..++|++|++...  +.+    ...|+|+.|+|++|  .+..... +-++. ..|++|-+.||+++..
T Consensus       218 p~i~sl~lsnNrL~~L--d~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~t  285 (585)
T KOG3763|consen  218 PEILSLSLSNNRLYHL--DALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTT  285 (585)
T ss_pred             cceeeeecccchhhch--hhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccc
Confidence            4566666777766532  112    22366777777777  3331100 11222 2366777777777653

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=81.07  E-value=1.9  Score=30.08  Aligned_cols=27  Identities=19%  Similarity=0.135  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHhccCcccccc
Q 048080          187 IVLCLILVVFFIVVYGRRRRSTQKSSN  213 (223)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (223)
                      +++++.++.+++++++.-||++++...
T Consensus        71 ~gv~aGvIg~Illi~y~irR~~Kk~~~   97 (122)
T PF01102_consen   71 FGVMAGVIGIILLISYCIRRLRKKSSS   97 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            333334444555566777777777543

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PHA03049 IMV membrane protein; Provisional

Probab=81.06  E-value=2.9  Score=25.42  Aligned_cols=11  Identities=18%  Similarity=0.416  Sum_probs=4.2

Q ss_pred             HHHHHHHHHHH
Q 048080          192 ILVVFFIVVYG  202 (223)
Q Consensus       192 ~~~~~~~~~~~  202 (223)
                      ++++++..+|.
T Consensus        14 Ii~lIvYgiYn   24 (68)
T PHA03049         14 IIGLIVYGIYN   24 (68)
T ss_pred             HHHHHHHHHHh
Confidence            33333333433

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=81.05  E-value=1.4  Score=21.93  Aligned_cols=14  Identities=57%  Similarity=0.762  Sum_probs=8.9

Q ss_pred             CCCCEEECCCCccc
Q 048080          107 KSITELDLSRNNLS  120 (223)
Q Consensus       107 ~~L~~L~L~~N~l~  120 (223)
                      ++|++|||++|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            35666666666665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	223
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-16
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-16
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-08

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 78/215 (36%), Gaps = 47/215 (21%)
Query: 1   NRPPSLGNCQNLILLTTCKNKLSGTVP--------------------------------- 27
           N P  LG+C++LI L    N  +GT+P                                 
Sbjct: 526 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 585
Query: 28  -------------RQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGE 74
                         QL R+ TR+   ++   +  GH      N   ++ LD+S NM SG 
Sbjct: 586 GAGNLLEFQGIRSEQLNRLSTRNPC-NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 644
Query: 75  IPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYXXXXXXXX 134
           IP  +G    L  L++  N  +GSIP  +  L+ +  LDLS N L G IPQ         
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 135 XXXXXXXXXEGKVPIEAIFNSTKGISLVGNENLCG 169
                     G +P    F +      + N  LCG
Sbjct: 705 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 78/215 (36%), Gaps = 47/215 (21%)
Query: 1   NRPPSLGNCQNLILLTTCKNKLSGTVP--------------------------------- 27
           N P  LG+C++LI L    N  +GT+P                                 
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588
Query: 28  -------------RQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGE 74
                         QL R+ TR+   ++   +  GH      N   ++ LD+S NM SG 
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPC-NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647
Query: 75  IPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYXXXXXXXX 134
           IP  +G    L  L++  N  +GSIP  +  L+ +  LDLS N L G IPQ         
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 135 XXXXXXXXXEGKVPIEAIFNSTKGISLVGNENLCG 169
                     G +P    F +      + N  LCG
Sbjct: 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 3   PPSLGNCQNL-ILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHL 61
           P SL N   L  L     N L G +P  + ++     L     N+ SG  P  +  +K L
Sbjct: 69  PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV-SGAIPDFLSQIKTL 127
Query: 62  VSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSL-KSITELDLSRNNLS 120
           V+LD S N  SG +P ++    +L  ++   N  +G+IP +  S  K  T + +SRN L+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 121 GHIP 124
           G IP
Sbjct: 188 GKIP 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	223
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-38
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-30
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-30
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  185 bits (472), Expect = 3e-58
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 2/168 (1%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           PPS+ +  NL+ +T   N++SG +P            + +  N L+G  P    NL  L 
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA 200

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            +D+S NM  G+     G   + + + +  NS    +   +   K++  LDL  N + G 
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGT 259

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG 170
           +PQ L  L FL  LN+S+N+  G++P           +   N+ LCG 
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  133 bits (336), Expect = 6e-38
 Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 5/152 (3%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGT--VPRQLLRIITRSVLLDLFD-NLLSGHFPAEVGNLK 59
             +      +  L      L     +P  L  +      L +   N L G  P  +  L 
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 60  HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNL 119
            L  L I+    SG IP  L    +L  L    N+ +G++P ++SSL ++  +    N +
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 120 SGHIPQYLENLSFLS-FLNLSYNHFEGKVPIE 150
           SG IP    + S L   + +S N   GK+P  
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  101 bits (254), Expect = 6e-26
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 4/121 (3%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGE--IPTTLGGCTSLEHLSMQD-NSFT 96
            D  +    G           + +LD+S         IP++L     L  L +   N+  
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 97  GSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNST 156
           G IP  ++ L  +  L ++  N+SG IP +L  +  L  L+ SYN   G +P   I +  
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLP 149

Query: 157 K 157
            
Sbjct: 150 N 150

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 78.7 bits (195), Expect = 1e-17
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 9/112 (8%)

Query: 46  LLSGHFPAEVGNLKHLVS----LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGS--I 99
           LL      ++GN   L S     D  +  + G +  T      + +L +   +      I
Sbjct: 11  LLQ--IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI 68

Query: 100 PSTLSSLKSITELDLS-RNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE 150
           PS+L++L  +  L +   NNL G IP  +  L+ L +L +++ +  G +P  
Sbjct: 69  PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  168 bits (429), Expect = 1e-48
 Identities = 50/172 (29%), Positives = 76/172 (44%), Gaps = 3/172 (1%)

Query: 1   NRPPSLGNCQNLILLTTCKN--KLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNL 58
            R   + N           N  +  G    QL R+ +     ++   +  GH      N 
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL-STRNPCNITSRVYGGHTSPTFDNN 631

Query: 59  KHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNN 118
             ++ LD+S NM SG IP  +G    L  L++  N  +GSIP  +  L+ +  LDLS N 
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691

Query: 119 LSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG 170
           L G IPQ +  L+ L+ ++LS N+  G +P    F +      + N  LCG 
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  145 bits (368), Expect = 2e-40
 Identities = 58/159 (36%), Positives = 90/159 (56%), Gaps = 2/159 (1%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           PP+L NC  L+ L    N LSGT+P  L  + ++   L L+ N+L G  P E+  +K L 
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLE 469

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
           +L +  N  +GEIP+ L  CT+L  +S+ +N  TG IP  +  L+++  L LS N+ SG+
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISL 161
           IP  L +   L +L+L+ N F G +P   +F  +  I+ 
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAA-MFKQSGKIAA 567

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  141 bits (359), Expect = 4e-39
 Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 2/148 (1%)

Query: 3   PPSLGNC-QNLILLTTCKNKLSGTVPRQLLRIITRSV-LLDLFDNLLSGHFPAEVGNLKH 60
           P SL N   +L+ L    N  SG +   L +    ++  L L +N  +G  P  + N   
Sbjct: 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419

Query: 61  LVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
           LVSL +S N  SG IP++LG  + L  L +  N   G IP  L  +K++  L L  N+L+
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479

Query: 121 GHIPQYLENLSFLSFLNLSYNHFEGKVP 148
           G IP  L N + L++++LS N   G++P
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIP 507

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  135 bits (341), Expect = 1e-36
 Identities = 55/150 (36%), Positives = 75/150 (50%), Gaps = 3/150 (2%)

Query: 3   PPSLGNCQ--NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKH 60
            P+L       L  L    N  +G +P  L    +  V L L  N LSG  P+ +G+L  
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSK 443

Query: 61  LVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
           L  L +  NM  GEIP  L    +LE L +  N  TG IPS LS+  ++  + LS N L+
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503

Query: 121 GHIPQYLENLSFLSFLNLSYNHFEGKVPIE 150
           G IP+++  L  L+ L LS N F G +P E
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAE 533

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  128 bits (323), Expect = 3e-34
 Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 6/183 (3%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P SLG+   L  L    N L G +P++L+ +      L L  N L+G  P+ + N  +L 
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLETLILDFNDLTGEIPSGLSNCTNLN 493

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            + +S+N  +GEIP  +G   +L  L + +NSF+G+IP+ L   +S+  LDL+ N  +G 
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNST-KGISLVGNENLCGGSRKSKFSILIK 181
           IP  +   S      ++ N   GK  +    +   K     GN     G R  + + L  
Sbjct: 554 IPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609

Query: 182 VVI 184
              
Sbjct: 610 RNP 612

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  124 bits (314), Expect = 5e-33
 Identities = 45/149 (30%), Positives = 64/149 (42%), Gaps = 6/149 (4%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV---GNLK 59
             SLG+C  L  L    N L           +    +LDL  N +SG             
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178

Query: 60  HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNL 119
            L  L IS N  SG++   +  C +LE L +  N+F+  IP  L    ++  LD+S N L
Sbjct: 179 ELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235

Query: 120 SGHIPQYLENLSFLSFLNLSYNHFEGKVP 148
           SG   + +   + L  LN+S N F G +P
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIP 264

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  124 bits (313), Expect = 7e-33
 Identities = 55/154 (35%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 8   NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDIS 67
             ++L  L+  +NK +G +P  L         LDL  N   G  P   G+   L SL +S
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326

Query: 68  SNMFSGEIPT-TLGGCTSLEHLSMQDNSFTGSIPSTLSSLK-SITELDLSRNNLSGHIPQ 125
           SN FSGE+P  TL     L+ L +  N F+G +P +L++L  S+  LDLS NN SG I  
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386

Query: 126 YLEN--LSFLSFLNLSYNHFEGKVPIEAIFNSTK 157
            L     + L  L L  N F GK+P   + N ++
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIP-PTLSNCSE 419

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  120 bits (304), Expect = 1e-31
 Identities = 51/144 (35%), Positives = 67/144 (46%), Gaps = 7/144 (4%)

Query: 6   LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLD 65
              C  L  L    NK+SG V       +     LD+  N  S   P  +G+   L  LD
Sbjct: 174 SDGCGELKHLAISGNKISGDVDVSRCVNLEF---LDVSSNNFSTGIP-FLGDCSALQHLD 229

Query: 66  ISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ 125
           IS N  SG+    +  CT L+ L++  N F G IP     LKS+  L L+ N  +G IP 
Sbjct: 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPD 287

Query: 126 YLE-NLSFLSFLNLSYNHFEGKVP 148
           +L      L+ L+LS NHF G VP
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVP 311

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  117 bits (296), Expect = 1e-30
 Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 12/161 (7%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPA--EVGNLKH 60
             SL +   L  L    + ++G+V     +       LDL  N LSG       +G+   
Sbjct: 70  SSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127

Query: 61  LVSLDISSNMFSGEIPTTLG-GCTSLEHLSMQDNSFTGSIPSTL---SSLKSITELDLSR 116
           L  L++SSN        + G    SLE L +  NS +G+             +  L +S 
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187

Query: 117 NNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTK 157
           N +SG +   +     L FL++S N+F   +P   + + + 
Sbjct: 188 NKISGDVD--VSRCVNLEFLDVSSNNFSTGIP--FLGDCSA 224

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  116 bits (293), Expect = 3e-30
 Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 7/150 (4%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P  L NC NL  ++   N+L+G +P+ +   +    +L L +N  SG+ PAE+G+ + L+
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELGDCRSLI 541

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRN--NLS 120
            LD+++N+F+G IP  +   +      +  N   G     + +     E   + N     
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597

Query: 121 GHIPQYLENLSFLSFLNLSYNHFEGKVPIE 150
           G   + L  LS  +  N++   + G     
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.9 bits (242), Expect = 2e-23
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 4/115 (3%)

Query: 39  LLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGS 98
           L     N+      + + +L  L SL +S++  +G +        SL  L +  NS +G 
Sbjct: 57  LSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGP 115

Query: 99  IPS--TLSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFEGKVPIE 150
           + +  +L S   +  L++S N L           L+ L  L+LS N   G   + 
Sbjct: 116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.5 bits (215), Expect = 7e-20
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 57  NLKHLVSLDISSNMFS---GEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELD 113
               + S+D+SS   +     + ++L   T LE L + ++   GS+        S+T LD
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLD 106

Query: 114 LSRNNLSGHIPQYLE--NLSFLSFLNLSYNHFEGKVPIEAIFNSTK 157
           LSRN+LSG +       + S L FLN+S N  +    +        
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 108 SITELDLSRNNLS---GHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN 164
            +T +DLS   L+     +   L +L+ L  L LS +H  G V       S   + L  N
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  103 bits (259), Expect = 9e-26
 Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 1/147 (0%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             +    + L  L    + L       +   +   + LD+        F      L  L 
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 63  SLDISSNMFSGEI-PTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 121
            L ++ N F     P       +L  L +         P+  +SL S+  L++S NN   
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508

Query: 122 HIPQYLENLSFLSFLNLSYNHFEGKVP 148
                 + L+ L  L+ S NH      
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 96.3 bits (240), Expect = 3e-23
 Identities = 31/154 (20%), Positives = 47/154 (30%), Gaps = 5/154 (3%)

Query: 4   PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVS 63
           P +    N+     C       +P  L         LDL  N L         +   L  
Sbjct: 2   PCVEVVPNITYQ--CMELNFYKIPDNLPFSTKN---LDLSFNPLRHLGSYSFFSFPELQV 56

Query: 64  LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 123
           LD+S               + L  L +  N          S L S+ +L     NL+   
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 124 PQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTK 157
              + +L  L  LN+++N  +     E   N T 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 94.3 bits (235), Expect = 1e-22
 Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 3/145 (2%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHL 61
                + +NLI L              +   ++   +L +  N    +F  ++   L++L
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 62  VSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 121
             LD+S        PT     +SL+ L+M  N+F          L S+  LD S N++  
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532

Query: 122 HIPQYLENL-SFLSFLNLSYNHFEG 145
              Q L++  S L+FLNL+ N F  
Sbjct: 533 SKKQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.1 bits (211), Expect = 2e-19
 Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 6/151 (3%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             S  +   L +L   + ++         + ++    L L  N +          L  L 
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTG-SIPSTLSSLKSITELDLSRNNLSG 121
            L       +      +G   +L+ L++  N      +P   S+L ++  LDLS N +  
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 122 HIPQYLENLSFLSF----LNLSYNHFEGKVP 148
                L  L  +      L+LS N      P
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 82.4 bits (204), Expect = 2e-18
 Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 8/160 (5%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLL-SGHFPAEVGNLKHL 61
             +     +L  L   +  L+       +  +     L++  NL+ S   P    NL +L
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 62  VSLDISSNMFSGEIPTTLGGCTSLE----HLSMQDNSFTGSIPSTLSSLKSITELDLSRN 117
             LD+SSN       T L     +      L +  N      P     +  + +L L  N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNN 210

Query: 118 NLSGHIPQY-LENLSFLSFLNLSYNHFEGKVPIEAIFNST 156
             S ++ +  ++ L+ L    L    F  +  +E    S 
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.8 bits (179), Expect = 4e-15
 Identities = 27/160 (16%), Positives = 43/160 (26%), Gaps = 27/160 (16%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
                   +L +L    N         +   +     LDL    L    P    +L  L 
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSL-KSITELDLSRNNLSG 121
            L++S N F            SL+ L    N    S    L     S+  L+L++N+ + 
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

Query: 122 --------------------------HIPQYLENLSFLSF 135
                                       P   + +  LS 
Sbjct: 558 TCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.9 bits (169), Expect = 8e-14
 Identities = 23/157 (14%), Positives = 43/157 (27%), Gaps = 11/157 (7%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
                   N+   +     +                 L+L +         ++ +LK L 
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH---LELVNCKFGQFPTLKLKSLKRLT 331

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDN--SFTGSIPSTLSSLKSITELDLSRNNLS 120
                          +     SLE L +  N  SF G    +     S+  LDLS N + 
Sbjct: 332 FTSNKGG-----NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 121 GHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTK 157
             +      L  L  L+  +++ +         +   
Sbjct: 387 T-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 31/158 (19%), Positives = 51/158 (32%), Gaps = 14/158 (8%)

Query: 1   NRPPSLGNCQNLILLTTCKNKLSGTVP---RQLLRIITRSVLLDLFDNLLSGHFPAEVGN 57
             P    N  NL  L    NK+        R L ++   ++ LDL  N ++         
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFK 198

Query: 58  LKHLVSLDISSNMFSGEIP-TTLGGCTSLEHLSMQDNSFTGSI---PSTLSSLKSITELD 113
              L  L + +N  S  +  T + G   LE   +    F           S+L+ +  L 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 114 LSRNNLS------GHIPQYLENLSFLSFLNLSYNHFEG 145
           +    L+        I      L+ +S  +L     E 
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  101 bits (253), Expect = 6e-25
 Identities = 19/170 (11%), Positives = 50/170 (29%), Gaps = 28/170 (16%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVL------------------LDLFD 44
             ++     L       +        +                            +++++
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258

Query: 45  NLLSGHFPAEVGNLKHLVSLDISSNMF--------SGEIPTTLGGCTSLEHLSMQDNSF- 95
                  P  +  L  +  ++++ N            +          ++ + +  N+  
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318

Query: 96  TGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 145
           T  + ++L  +K +  L+   N L G +P    +   L+ LNL+YN    
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE 367

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 89.3 bits (222), Expect = 7e-21
 Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 16/157 (10%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSG-------HFPAEV 55
            P+     N+  +    N++S   P++L    +    ++L  N+L+              
Sbjct: 426 DPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 56  GNLKHLVSLDISSNMFSGEIPT-TLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITEL-- 112
            N   L S+D+  N  +             L  + +  NSF+   P+   +  ++     
Sbjct: 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI 543

Query: 113 ----DLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 145
               D   N      P+ +     L+ L +  N    
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 89.3 bits (222), Expect = 7e-21
 Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 22/157 (14%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVP-----RQLLRIITRSVLLDLFDNLLSGHFPAEVGN 57
             SL   + L +L    N+L G +P      +L         L+L  N ++       G 
Sbjct: 323 ETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLAS-------LNLAYNQITEIPANFCGF 375

Query: 58  LKHLVSLDISSNMFSGEIPTTL--GGCTSLEHLSMQDNSFTG-------SIPSTLSSLKS 108
            + + +L  + N     IP        + +  +    N            +  T     +
Sbjct: 376 TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434

Query: 109 ITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 145
           ++ ++LS N +S    +     S LS +NL  N    
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 88.2 bits (219), Expect = 2e-20
 Identities = 19/160 (11%), Positives = 53/160 (33%), Gaps = 7/160 (4%)

Query: 5   SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSL 64
              +  +LI      +    ++  +  RI  +   +    N ++      V  L  L   
Sbjct: 154 PREDFSDLIKDCINSDPQQKSIK-KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQF 211

Query: 65  DISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP 124
            + ++ F  E         + E+          +      +LK +T++++        +P
Sbjct: 212 YMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP 266

Query: 125 QYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN 164
            +L+ L  +  +N++ N       ++  + +     +   
Sbjct: 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 85.9 bits (213), Expect = 1e-19
 Identities = 29/146 (19%), Positives = 43/146 (29%), Gaps = 10/146 (6%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             +  N   L  +    NKL+          +   V +DL  N  S  FP +  N   L 
Sbjct: 481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539

Query: 63  SLDI------SSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR 116
              I        N    E P  +  C SL  L +  N           ++   + LD+  
Sbjct: 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKD 596

Query: 117 NNLSGHIPQYLENLSFLSFLNLSYNH 142
           N        Y+          L Y+ 
Sbjct: 597 NPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 83.6 bits (207), Expect = 7e-19
 Identities = 32/167 (19%), Positives = 59/167 (35%), Gaps = 14/167 (8%)

Query: 1   NRPPSLGNCQNLILLTTCKNKL-SGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLK 59
                    + + ++    N L +  V   L + + +  +L+   N L G  P   G+  
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQK-MKKLGMLECLYNQLEGKLP-AFGSEI 353

Query: 60  HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLS--SLKSITELDLSRN 117
            L SL+++ N  +       G    +E+LS   N     IP+     S+  ++ +D S N
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYN 412

Query: 118 NLSG-------HIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTK 157
            +          +         +S +NLS N      P E     + 
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSP 458

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.8 bits (187), Expect = 4e-16
 Identities = 15/112 (13%), Positives = 30/112 (26%), Gaps = 6/112 (5%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSG----EIPTTLGGCTSLEHLSMQDNSF 95
           L L     SG  P  +G L  L  L + S+          P  +    S E        +
Sbjct: 86  LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHY 145

Query: 96  TGSIPSTLSSLK--SITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 145
             +            + +  ++ +     I +        + +    N+   
Sbjct: 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.1 bits (185), Expect = 5e-16
 Identities = 13/142 (9%), Positives = 31/142 (21%), Gaps = 6/142 (4%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRII---TRSVLLDLFDNLLSGHFPAEVGNLK 59
           P ++G    L +L    +           + I                   F        
Sbjct: 98  PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED 157

Query: 60  --HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRN 117
              L+   I+S+     I  +         +    N+ T  +   +  L  + +  +  +
Sbjct: 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNS 216

Query: 118 NLSGHIPQYLENLSFLSFLNLS 139
                            +    
Sbjct: 217 PFVAENICEAWENENSEYAQQY 238

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.5 bits (173), Expect = 2e-14
 Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 5/127 (3%)

Query: 45  NLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTG----SIP 100
           ++        + +   +  L +     SG +P  +G  T LE L++  +          P
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 101 STLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI-EAIFNSTKGI 159
             +S+  S  +    R +       Y     F   +    N    +  I ++   + K  
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

Query: 160 SLVGNEN 166
            +    N
Sbjct: 187 QIGQLSN 193

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 19/121 (15%), Positives = 32/121 (26%), Gaps = 9/121 (7%)

Query: 5   SLGNCQNLILLTTCKNKLSGTVPRQL-----LRIITRSVLLDLFDNLLSGHFPAEVGNLK 59
                  L+ +    N  S   P Q      L+        D   N     +P  +    
Sbjct: 508 RATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566

Query: 60  HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNL 119
            L  L I SN     +   +    ++  L ++DN       S +          L  +  
Sbjct: 567 SLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

Query: 120 S 120
            
Sbjct: 624 Q 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 11/90 (12%), Positives = 29/90 (32%), Gaps = 4/90 (4%)

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG- 121
           + +   +M+  +   +L     +  LS++    +G +P  +  L  +  L L  +     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 122 ---HIPQYLENLSFLSFLNLSYNHFEGKVP 148
                P+ +              H++    
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFV 150

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 14/89 (15%), Positives = 32/89 (35%)

Query: 93  NSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAI 152
           + +      +L+S   +T L L     SG +P  +  L+ L  L L  +  +    +   
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 153 FNSTKGISLVGNENLCGGSRKSKFSILIK 181
              +  +S    + +    +K+      +
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPR 155

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 94.9 bits (236), Expect = 9e-23
 Identities = 18/152 (11%), Positives = 42/152 (27%), Gaps = 16/152 (10%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             ++     L ++    +  +                 +        +      NLK L 
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWE------DANSDYAKQYENEELSWSNLKDLT 494

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTG---------SIPSTLSSLKSITELD 113
            +++ +     ++P  L     L+ L++  N              +     +   I    
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 114 LSRNNLSG-HIPQYLENLSFLSFLNLSYNHFE 144
           +  NNL        L+ +  L  L+  +N   
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.2 bits (208), Expect = 4e-19
 Identities = 23/157 (14%), Positives = 47/157 (29%), Gaps = 16/157 (10%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFP--AEVGNLKH 60
             + G    L  L    N++   +P        +   L    N L    P      ++  
Sbjct: 588 LEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYV 645

Query: 61  LVSLDISSNMFSGEIPTTLGG-----CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLS 115
           + S+D S N    E              +   +++  N          ++   I+ + LS
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 116 RNNLS-------GHIPQYLENLSFLSFLNLSYNHFEG 145
            N ++              +N   L+ ++L +N    
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 81.5 bits (201), Expect = 4e-18
 Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 10/155 (6%)

Query: 5   SLGNCQNLILLTTCKNKLSG----TVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKH 60
            L   Q L L    ++ ++        ++  RI  +   +    N ++      +  L  
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTK 449

Query: 61  LVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
           L  +  +++ F+ +           E  +        +   + S+LK +T+++L      
Sbjct: 450 LQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504

Query: 121 GHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNS 155
             +P +L +L  L  LN++ N       ++A +  
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 81.5 bits (201), Expect = 4e-18
 Identities = 20/155 (12%), Positives = 39/155 (25%), Gaps = 13/155 (8%)

Query: 1   NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSG---------HF 51
           N   S  N ++L  +          +P  L   +     L++  N               
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRL 540

Query: 52  PAEVGNLKHLVSLDISSNMFSG-EIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSIT 110
             +      +    +  N         +L     L  L    N           +   +T
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLT 598

Query: 111 ELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 145
           +L L  N +      +      +  L  S+N  + 
Sbjct: 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY 633

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 79.1 bits (195), Expect = 3e-17
 Identities = 27/155 (17%), Positives = 41/155 (26%), Gaps = 16/155 (10%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVL--------LDLFDNLLSGHFPAE 54
           P  L +   L  L    N+       +                    +  N L   FPA 
Sbjct: 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPAS 566

Query: 55  V--GNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITEL 112
                +  L  LD   N     +    G    L  L +  N          +    +  L
Sbjct: 567 ASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624

Query: 113 DLSRNNLSGHIPQYLE--NLSFLSFLNLSYNHFEG 145
             S N L   IP      ++  +  ++ SYN    
Sbjct: 625 GFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGS 658

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.4 bits (193), Expect = 5e-17
 Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 20/182 (10%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLS-------GHFPAEV 55
                   N   +T   N++    P +L    +    + L +NL++              
Sbjct: 666 SMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724

Query: 56  GNLKHLVSLDISSNMFSGEIPTTL--GGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELD 113
            N   L ++D+  N  +  +           L ++ +  N F+ S P+   +   +    
Sbjct: 725 KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFG 782

Query: 114 LSR------NNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENL 167
           +        N +    P  +     L  L +  N    KV  E +      + +  N N+
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVD-EKLTPQLYILDIADNPNI 840

Query: 168 CG 169
             
Sbjct: 841 SI 842

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 72.2 bits (177), Expect = 7e-15
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 12/147 (8%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             +  N   L  +    NKL+          +     +D+  N  S  FP +  N   L 
Sbjct: 721 DGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLK 779

Query: 63  SLDI------SSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR 116
           +  I        N    + PT +  C SL  L +  N     +   L     +  LD++ 
Sbjct: 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIAD 836

Query: 117 NNL-SGHIPQYLENLSFLSFLNLSYNH 142
           N   S  +      +       L Y+ 
Sbjct: 837 NPNISIDVTSVCPYIE-AGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.7 bits (155), Expect = 5e-12
 Identities = 17/183 (9%), Positives = 51/183 (27%), Gaps = 34/183 (18%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P ++G    L +L+   +  + +        +T  +  +    +   +    +   + L 
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399

Query: 63  SLDISSNMFSG----------------------------EIPTTLGGCTSLEHLSMQDNS 94
             D+  +  +                              I   +   T L+ +   ++ 
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP 459

Query: 95  FTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFN 154
           FT    +           +        +      NL  L+ + L       ++P + +++
Sbjct: 460 FTYDNIAVDWED-----ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYD 513

Query: 155 STK 157
             +
Sbjct: 514 LPE 516

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.7 bits (155), Expect = 5e-12
 Identities = 17/113 (15%), Positives = 42/113 (37%), Gaps = 1/113 (0%)

Query: 45  NLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLS 104
           ++       ++ N   +  L ++     G +P  +G  T L+ LS   +S T S      
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 105 SLKSITELDLSRNNLSGHIPQ-YLENLSFLSFLNLSYNHFEGKVPIEAIFNST 156
              +    +  ++ +  H  + +L+    L+  +L  +       ++ I   +
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 15/135 (11%), Positives = 37/135 (27%), Gaps = 29/135 (21%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           L L      G  P  +G L  L  L   ++  +           + +    + +      
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387

Query: 100 PS-TLSSLKSITELDLSRNNLSGH----------------------------IPQYLENL 130
               L   + +   DL ++ ++ +                            I + ++ L
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRL 447

Query: 131 SFLSFLNLSYNHFEG 145
           + L  +  + + F  
Sbjct: 448 TKLQIIYFANSPFTY 462

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 9e-09
 Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 11/122 (9%)

Query: 5   SLGNCQNLILLTTCKNKLSGTVPRQL-----LRIITRSVLLDLFDNLLSGHFPAEVGNLK 59
                  L  +    N  S + P Q      L+        D   N +   +P  +    
Sbjct: 748 RATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806

Query: 60  HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFT-GSIPSTLSSLKSITE-LDLSRN 117
            L+ L I SN    ++   L     L  L + DN      + S    +++    L   + 
Sbjct: 807 SLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

Query: 118 NL 119
             
Sbjct: 864 QD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 8/105 (7%), Positives = 28/105 (26%)

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
           + +   +M+  +    L     +  LS+      G +P  +  L  +  L    ++ +  
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENL 167
              + +            +          +    +       ++ 
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 92.4 bits (230), Expect = 6e-22
 Identities = 31/106 (29%), Positives = 41/106 (38%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           LD+  N +S   P     L  L  L++  N  S     T   CT+L  L +  NS     
Sbjct: 54  LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113

Query: 100 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 145
            +     K++  LDLS N LS         L  L  L LS N  + 
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 92.4 bits (230), Expect = 7e-22
 Identities = 34/138 (24%), Positives = 49/138 (35%), Gaps = 5/138 (3%)

Query: 20  NKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTL 79
            KL+  VP  L   IT    L+L  N L     A       L SLD+  N  S   P   
Sbjct: 14  LKLT-QVPDDLPTNITV---LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC 69

Query: 80  GGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLS 139
                L+ L++Q N  +     T +   ++TEL L  N++             L  L+LS
Sbjct: 70  QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129

Query: 140 YNHFEGKVPIEAIFNSTK 157
           +N       +        
Sbjct: 130 HNGLSS-TKLGTQVQLEN 146

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 89.7 bits (223), Expect = 5e-21
 Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 10/154 (6%)

Query: 1   NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLS--------GHFP 52
           + P      +NL +L    N ++  +   +L  + +  +LDL  N L+        G   
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 53  AEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITEL 112
             +  L HL  L++ SN F             L+ + +  N+      S  ++  S+  L
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589

Query: 113 DLSRNNLSGHIPQYLE-NLSFLSFLNLSYNHFEG 145
           +L +N ++    +        L+ L++ +N F+ 
Sbjct: 590 NLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.9 bits (221), Expect = 1e-20
 Identities = 31/157 (19%), Positives = 53/157 (33%), Gaps = 4/157 (2%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             +      L  L    N +S  +  +L + +    +L+L  N LS           +L 
Sbjct: 42  AANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            L + SN              +L  L +  N  + +   T   L+++ EL LS N +   
Sbjct: 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160

Query: 123 IPQYLE--NLSFLSFLNLSYNHFEGKVPIEAIFNSTK 157
             + L+    S L  L LS N  +            +
Sbjct: 161 KSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGR 196

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.1 bits (219), Expect = 2e-20
 Identities = 31/153 (20%), Positives = 52/153 (33%), Gaps = 10/153 (6%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             +     +L +L    N++   +  Q  R +     + L  N            +  L 
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 63  SLDISSNMFSG--EIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
            L +           P+      +L  L + +N+        L  L+ +  LDL  NNL+
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

Query: 121 --------GHIPQYLENLSFLSFLNLSYNHFEG 145
                   G    +L+ LS L  LNL  N F+ 
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.1 bits (211), Expect = 2e-19
 Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 13/156 (8%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVL--LDLFDNLLSGHFPAEVGNLK- 59
           P        L  L     +L  ++  +L   +  + +  L L ++ LS         LK 
Sbjct: 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247

Query: 60  -HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRN- 117
            +L  LD+S N  +     +      LE+  ++ N+       +L  L ++  L+L R+ 
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307

Query: 118 --------NLSGHIPQYLENLSFLSFLNLSYNHFEG 145
                   +L        + L  L  LN+  N   G
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.4 bits (204), Expect = 2e-18
 Identities = 28/167 (16%), Positives = 49/167 (29%), Gaps = 12/167 (7%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPR--------QLLRIITRSVLLDLFDNLLSGHFPAE 54
             S      L       N +              + L +        +    L       
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324

Query: 55  VGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDN--SFTGSIPSTLSSL--KSIT 110
              LK L  L++  N   G       G  +L++LS+ ++  S       T  SL    + 
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384

Query: 111 ELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTK 157
            L+L++N +S         L  L  L+L  N    ++  +       
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN 431

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 11/151 (7%)

Query: 3   PPSLGNCQNLILLTTCKNKLS-------GTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV 55
              L   + L +L    N L+          P   L+ ++   +L+L  N          
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556

Query: 56  GNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLS-SLKSITELDL 114
            +L  L  +D+  N  +    +      SL+ L++Q N  T         + +++TELD+
Sbjct: 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616

Query: 115 SRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 145
             N              F++++N ++ +   
Sbjct: 617 RFNPFDCTCESIAW---FVNWINETHTNIPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 7e-10
 Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 6/149 (4%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
              L    +L +L    N     +P ++ + +    ++DL  N L+    +   N   L 
Sbjct: 529 IYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587

Query: 63  SLDISSNMFSGEIPTTLGGC-TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 121
           SL++  N+ +       G    +L  L M+ N F  +  S    +  I E   +   LS 
Sbjct: 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647

Query: 122 HI----PQYLENLSFLSFLNLSYNHFEGK 146
           H     P +        F   S       
Sbjct: 648 HYLCNTPPHYHGFPVRLFDTSSCKDSAHH 676

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 85.9 bits (213), Expect = 1e-19
 Identities = 31/153 (20%), Positives = 50/153 (32%), Gaps = 6/153 (3%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
            P +    N+     C ++    VP  +         +DL  N L         N   L 
Sbjct: 5   NPCIEVVPNITYQ--CMDQKLSKVPDDIPSSTKN---IDLSFNPLKILKSYSFSNFSELQ 59

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            LD+S             G   L +L +  N      P + S L S+  L      L+  
Sbjct: 60  WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL 119

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNS 155
               +  L  L  LN+++N       + A F++
Sbjct: 120 ESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSN 151

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 81.6 bits (202), Expect = 3e-18
 Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 1/105 (0%)

Query: 40  LDLFDNLLSGHFPAEV-GNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGS 98
           L +  N    +  + V  N  +L  LD+S                 L+ L+M  N+    
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512

Query: 99  IPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 143
             S  + L S++ LD S N +             L+F NL+ N  
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 74.3 bits (183), Expect = 9e-16
 Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             S  N   L  L   + ++   +  +    +     L L  N +    P     L  L 
Sbjct: 49  SYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTG-SIPSTLSSLKSITELDLSRNNLSG 121
           +L       +      +G   +L+ L++  N      +P+  S+L ++  +DLS N +  
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

Query: 122 HIPQYLENLSFLSF----LNLSYNHFE 144
                L+ L         L++S N  +
Sbjct: 168 ITVNDLQFLRENPQVNLSLDMSLNPID 194

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.7 bits (171), Expect = 4e-14
 Identities = 26/143 (18%), Positives = 40/143 (27%), Gaps = 4/143 (2%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
                   +L  L    N         +    T    LDL    L          L  L 
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            L++S N       +      SL  L    N    S        KS+   +L+ N+++  
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA-C 559

Query: 123 IPQYLENLSFLSFLNLSYNHFEG 145
           I    E+  FL ++         
Sbjct: 560 IC---EHQKFLQWVKEQKQFLVN 579

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.9 bits (169), Expect = 7e-14
 Identities = 38/154 (24%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 7   GNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLS--GHFPAEVGNLKHLVSL 64
            +   L  LT   NK S +  +  L  ++    LDL  N LS  G           L  L
Sbjct: 325 LDLPFLKSLTLTMNKGSISFKKVALPSLS---YLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 65  DISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIP-STLSSLKSITELDLSRNNLSGHI 123
           D+S N     +     G   L+HL  Q ++       S   SL+ +  LD+S  N     
Sbjct: 382 DLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440

Query: 124 PQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTK 157
                 L+ L+ L ++ N F+         N+T 
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 28/156 (17%), Positives = 48/156 (30%), Gaps = 13/156 (8%)

Query: 1   NRPPSLGNCQNLILLTTCKNKLSGTVP---RQLLRIITRSVLLDLFDNLLSGHFPAEVGN 57
             P    N  NL+ +    N +        + L      ++ LD+  N +      +   
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQ 202

Query: 58  LKHLVSLDISSNMFSGEIP-TTLGGCTSLEHLSMQDNSFTGSI------PSTLSSLK--S 108
              L  L +  N  S  I  T L     L    +    F          PS +  L   +
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 109 ITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 144
           I E  L+  N           L+ +S ++L+    +
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.7 bits (132), Expect = 5e-09
 Identities = 23/150 (15%), Positives = 40/150 (26%), Gaps = 14/150 (9%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVL-------LDLFDNLLSGHFPAEV 55
              L N   L +      +       ++        L         L           + 
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281

Query: 56  GNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLS 115
             L ++ ++ ++           +      + LS+            L  LK    L L+
Sbjct: 282 HCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLK---SLTLT 336

Query: 116 RNNLSGHIPQYLENLSFLSFLNLSYNHFEG 145
            N  S  I      L  LS+L+LS N    
Sbjct: 337 MNKGS--ISFKKVALPSLSYLDLSRNALSF 364

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.5 bits (212), Expect = 2e-19
 Identities = 29/149 (19%), Positives = 48/149 (32%), Gaps = 4/149 (2%)

Query: 9   CQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISS 68
            + +     C+N     +P  L         L+   N+L          L +L  LD++ 
Sbjct: 10  EKEVNKTYNCENLGLNEIPGTLPNSTEC---LEFSFNVLPTIQNTTFSRLINLTFLDLTR 66

Query: 69  NMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLE 128
                    T      L+ L +  N       + LS  K++  L   +  +S      L 
Sbjct: 67  CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126

Query: 129 NLSFLSFLNLSYNHFEGKVPIEAIFNSTK 157
           N   L  L L  NH    + +   F + K
Sbjct: 127 NQKTLESLYLGSNHISS-IKLPKGFPTEK 154

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.1 bits (198), Expect = 1e-17
 Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 4/149 (2%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             +   C  L LL     +L     +   + +    +L+L  +LL          L  L 
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452

Query: 63  SLDISSNMFSGEI---PTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNL 119
            L++  N F         +L     LE L +     +       +SLK +  +DLS N L
Sbjct: 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512

Query: 120 SGHIPQYLENLSFLSFLNLSYNHFEGKVP 148
           +    + L +L  + +LNL+ NH    +P
Sbjct: 513 TSSSIEALSHLKGI-YLNLASNHISIILP 540

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.5 bits (194), Expect = 4e-17
 Identities = 21/106 (19%), Positives = 36/106 (33%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           LDL    +         +   L +L +++N       T L G  +L+HL       +   
Sbjct: 62  LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121

Query: 100 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 145
              L + K++  L L  N++S            L  L+   N    
Sbjct: 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.4 bits (191), Expect = 9e-17
 Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 3/167 (1%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             +     NL  L   + ++   +     +   R   L L  N L       +   K L 
Sbjct: 50  NTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            L       S      L    +LE L +  N  +          + +  LD   N +   
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168

Query: 123 IPQYLENLSFLS--FLNLSYNHFEGKVPIEAIFNSTKGISLVGNENL 167
             + + +L   +   LNL+ N   G  P        + ++  G +NL
Sbjct: 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.4 bits (191), Expect = 9e-17
 Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 4/152 (2%)

Query: 5   SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSL 64
           ++ +             +S  V   L  +   S  ++L  +               L  L
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES--INLQKHYFFNISSNTFHCFSGLQEL 283

Query: 65  DISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI- 123
           D+++   S E+P+ L G ++L+ L +  N F      + S+  S+T L +  N     + 
Sbjct: 284 DLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342

Query: 124 PQYLENLSFLSFLNLSYNHFEGKVPIEAIFNS 155
              LENL  L  L+LS++  E          +
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.0 bits (190), Expect = 1e-16
 Identities = 31/147 (21%), Positives = 49/147 (33%), Gaps = 5/147 (3%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDN-LLSGHFPAEVGNLKHL 61
           P  L     L  L    NK    + +           L +  N          + NL++L
Sbjct: 294 PSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 62  VSLDISSNM--FSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNL 119
             LD+S +    S      L   + L+ L++  N               +  LDL+   L
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

Query: 120 SGHIPQY-LENLSFLSFLNLSYNHFEG 145
                Q   +NL  L  LNLS++  + 
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDI 439

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.4 bits (186), Expect = 4e-16
 Identities = 34/146 (23%), Positives = 50/146 (34%), Gaps = 5/146 (3%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVG---NLK 59
                N   L +L    + L      QL   +     L+L  N        +      L 
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476

Query: 60  HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNL 119
            L  L +S    S            + H+ +  N  T S    LS LK I  L+L+ N++
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHI 535

Query: 120 SGHIPQYLENLSFLSFLNLSYNHFEG 145
           S  +P  L  LS    +NL  N  + 
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 31/158 (19%), Positives = 49/158 (31%), Gaps = 5/158 (3%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             +      L  L      LS  +P  L+ + +    L L  N           N   L 
Sbjct: 271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGL-STLKKLVLSANKFENLCQISASNFPSLT 328

Query: 63  SLDISSNMFSGEIPT-TLGGCTSLEHLSMQDNSFTGS--IPSTLSSLKSITELDLSRNNL 119
            L I  N    E+ T  L    +L  L +  +    S      L +L  +  L+LS N  
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388

Query: 120 SGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTK 157
                +  +    L  L+L++   + K       N   
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.1 bits (154), Expect = 6e-12
 Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 4/161 (2%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             +L   + L  L   +  +S  +    L        L L  N +S     +    + L 
Sbjct: 98  ETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK 156

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEH--LSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
            LD  +N         +       +  L++  N     I            L+       
Sbjct: 157 VLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNL 215

Query: 121 GHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISL 161
             I + L+N +  S    ++   + +    A+F     +S+
Sbjct: 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 2/96 (2%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             SL     L +L      LS  + +     +     +DL  N L+      + +LK + 
Sbjct: 469 TNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY 527

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGS 98
            L+++SN  S  +P+ L   +    ++++ N    +
Sbjct: 528 -LNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 81.5 bits (202), Expect = 1e-18
 Identities = 29/156 (18%), Positives = 53/156 (33%), Gaps = 10/156 (6%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVL--------LDLFDNLLSGHFPAE 54
           P S+ +   L  L+         +P  L                 L L    +    PA 
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS 201

Query: 55  VGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDL 114
           + NL++L SL I ++  S  +   +     LE L ++  +   + P        +  L L
Sbjct: 202 IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260

Query: 115 SRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE 150
              +    +P  +  L+ L  L+L       ++P  
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.1 bits (188), Expect = 1e-16
 Identities = 31/154 (20%), Positives = 54/154 (35%), Gaps = 14/154 (9%)

Query: 1   NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVL-LDLFDNLLSGHFPAEVGNLK 59
           +      N  N  + T     L       L        + L+L    L   FP +   L 
Sbjct: 47  HSAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLS 104

Query: 60  HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNL 119
           HL  + I +     E+P T+     LE L++  N    ++P++++SL  + EL +     
Sbjct: 105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE 162

Query: 120 SGHIPQYLENLSF---------LSFLNLSYNHFE 144
              +P+ L +            L  L L +    
Sbjct: 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 74.2 bits (183), Expect = 6e-16
 Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 3/139 (2%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
                   NL  L      +  ++P  +  +      L + ++ LS      + +L  L 
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIR-SLPASIANL-QNLKSLKIRNSPLS-ALGPAIHHLPKLE 232

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            LD+         P   GG   L+ L ++D S   ++P  +  L  + +LDL        
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292

Query: 123 IPQYLENLSFLSFLNLSYN 141
           +P  +  L     + +  +
Sbjct: 293 LPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 3/125 (2%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P S+ N QNL  L    + LS  +   +  +  +   LDL       ++P   G    L 
Sbjct: 199 PASIANLQNLKSLKIRNSPLS-ALGPAIHHL-PKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            L +        +P  +   T LE L ++       +PS ++ L +   + +   +L   
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQ 315

Query: 123 IPQYL 127
           + Q+ 
Sbjct: 316 LDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 13/104 (12%), Positives = 28/104 (26%), Gaps = 1/104 (0%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
            P++ +   L  L           P            L L D       P ++  L  L 
Sbjct: 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGR-APLKRLILKDCSNLLTLPLDIHRLTQLE 280

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSL 106
            LD+   +    +P+ +    +   + +  +           + 
Sbjct: 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 13/126 (10%), Positives = 30/126 (23%), Gaps = 23/126 (18%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSG-------------------EIPTTLG 80
           L    +     +   +   +   + D +    +                         L 
Sbjct: 17  LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLE 76

Query: 81  GCTS--LEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNL 138
             T      L ++        P     L  +  + +    L   +P  ++  + L  L L
Sbjct: 77  DATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL 134

Query: 139 SYNHFE 144
           + N   
Sbjct: 135 ARNPLR 140

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 72.2 bits (178), Expect = 3e-15
 Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 9/139 (6%)

Query: 4   PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVS 63
             + N   L  L    NK++   P   L  +T    L++  N +S      V +L  L  
Sbjct: 215 TPVANMTRLNSLKIGNNKITDLSPLANLSQLTW---LEIGTNQISD--INAVKDLTKLKM 269

Query: 64  LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 123
           L++ SN  S    + L   + L  L + +N         +  L ++T L LS+N+++   
Sbjct: 270 LNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327

Query: 124 PQYLENLSFLSFLNLSYNH 142
           P  L +LS +   + +   
Sbjct: 328 P--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.1 bits (170), Expect = 4e-14
 Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 13/154 (8%)

Query: 4   PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVS 63
             +    NL  L    N+++   P   L  +T    L +  N ++    + + NL +L  
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTN---LYIGTNKITD--ISALQNLTNLRE 114

Query: 64  LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 123
           L ++ +  S   P  L   T +  L++  N    S  S LS++  +  L ++ + +    
Sbjct: 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVT 171

Query: 124 PQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTK 157
           P  + NL+ L  L+L+YN  E    I  + + T 
Sbjct: 172 P--IANLTDLYSLSLNYNQIED---ISPLASLTS 200

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.7 bits (169), Expect = 5e-14
 Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 9/147 (6%)

Query: 4   PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVS 63
             L +  +L   T   N+++   P   +  +     L + +N ++   P  + NL  L  
Sbjct: 193 SPLASLTSLHYFTAYVNQITDITPVANMTRLNS---LKIGNNKITDLSP--LANLSQLTW 247

Query: 64  LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 123
           L+I +N  S      +   T L+ L++  N  +    S L++L  +  L L+ N L    
Sbjct: 248 LEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNED 303

Query: 124 PQYLENLSFLSFLNLSYNHFEGKVPIE 150
            + +  L+ L+ L LS NH     P+ 
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRPLA 330

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.3 bits (168), Expect = 7e-14
 Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 13/153 (8%)

Query: 5   SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSL 64
              +    I     K  ++  V ++ L  IT+   L +    ++      +  L +L  L
Sbjct: 17  PDADLAEGIRAVLQKASVTDVVTQEELESITK---LVVAGEKVAS--IQGIEYLTNLEYL 71

Query: 65  DISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP 124
           +++ N  +   P  L     L +L +  N  T    S L +L ++ EL L+ +N+S   P
Sbjct: 72  NLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP 127

Query: 125 QYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTK 157
             L NL+ +  LNL  NH      +  + N T 
Sbjct: 128 --LANLTKMYSLNLGANHNLSD--LSPLSNMTG 156

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.8 bits (164), Expect = 3e-13
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 10/148 (6%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             +L N  NL  L   ++ +S   P   L  +T+   L+L  N       + + N+  L 
Sbjct: 103 ISALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSD-LSPLSNMTGLN 158

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            L ++ +      P  +   T L  LS+  N      P  L+SL S+       N ++  
Sbjct: 159 YLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDI 214

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIE 150
            P  + N++ L+ L +  N      P+ 
Sbjct: 215 TP--VANMTRLNSLKIGNNKITDLSPLA 240

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.4 bits (163), Expect = 4e-13
 Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 11/143 (7%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
              L N   L  LT  ++K+    P   L  +     L L  N +     + + +L  L 
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYS---LSLNYNQIED--ISPLASLTSLH 202

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
                 N  +   P  +   T L  L + +N  T   P  L++L  +T L++  N +S  
Sbjct: 203 YFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD- 257

Query: 123 IPQYLENLSFLSFLNLSYNHFEG 145
               +++L+ L  LN+  N    
Sbjct: 258 -INAVKDLTKLKMLNVGSNQISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.2 bits (147), Expect = 4e-11
 Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 7/117 (5%)

Query: 4   PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVS 63
             L N   L  L    N++S     + L  +     L++  N +S    + + NL  L S
Sbjct: 237 SPLANLSQLTWLEIGTNQISDINAVKDLTKLKM---LNVGSNQISD--ISVLNNLSQLNS 291

Query: 64  LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
           L +++N    E    +GG T+L  L +  N  T   P  L+SL  +   D +   + 
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.9 bits (174), Expect = 2e-14
 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 1/116 (0%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           LDL  N L         +   L  LD+S               + L  L +  N      
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 100 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNS 155
               S L S+ +L     NL+      + +L  L  LN+++N  +    +   F++
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSN 147

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.3 bits (162), Expect = 6e-13
 Identities = 24/142 (16%), Positives = 45/142 (31%), Gaps = 1/142 (0%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             +    + L  L    + L       +   +   + LD+        F      L  L 
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 63  SLDISSNMFSGEIPT-TLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 121
            L ++ N F             +L  L +         P+  +SL S+  L+++ N L  
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508

Query: 122 HIPQYLENLSFLSFLNLSYNHF 143
                 + L+ L  + L  N +
Sbjct: 509 VPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 4/112 (3%)

Query: 40  LDLFDNLLS--GHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTG 97
           LDL  N LS  G           L  LD+S N     + +   G   LEHL  Q ++   
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 98  SIP-STLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP 148
               S   SL+++  LD+S  +           LS L  L ++ N F+    
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.0 bits (156), Expect = 4e-12
 Identities = 29/144 (20%), Positives = 48/144 (33%), Gaps = 4/144 (2%)

Query: 4   PSLGNCQNLILLTTCKNKLSG-TVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
            S  +  +L  L   +N LS      Q     T    LDL  N +     +    L+ L 
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 399

Query: 63  SLDISSNMFSGEIPT-TLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 121
            LD   +               +L +L +       +     + L S+  L ++ N+   
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 122 HIPQY-LENLSFLSFLNLSYNHFE 144
           +        L  L+FL+LS    E
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.8 bits (153), Expect = 9e-12
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 6/147 (4%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             S  +   L +L   + ++  T+     + ++    L L  N +          L  L 
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFT-GSIPSTLSSLKSITELDLSRNNLSG 121
            L       +      +G   +L+ L++  N      +P   S+L ++  LDLS N +  
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 122 HIPQYLENLSFLSF----LNLSYNHFE 144
                L  L  +      L+LS N   
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 31/183 (16%), Positives = 62/183 (33%), Gaps = 30/183 (16%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             +  +  +L  L    N +  ++       ++    L   +  L+      +G+LK L 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 63  SLDISSNMF-SGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLK-------------- 107
            L+++ N+  S ++P      T+LEHL +  N       + L  L               
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 108 -------------SITELDLSRNNLSGHIPQ-YLENLSFLSFLNLSYNHFEGKVPIEAIF 153
                         + +L L  N  S ++ +  ++ L+ L    L    F  +  +E   
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 154 NST 156
            S 
Sbjct: 248 KSA 250

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.4 bits (139), Expect = 7e-10
 Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 2/116 (1%)

Query: 6   LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHLVSL 64
             + +NLI L              +   ++   +L +  N    +F  ++   L++L  L
Sbjct: 417 FLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 65  DISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
           D+S        PT     +SL+ L+M  N            L S+ ++ L  N   
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 19/99 (19%), Positives = 31/99 (31%)

Query: 5   SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSL 64
                 +L +L    N         +   +     LDL    L    P    +L  L  L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 65  DISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTL 103
           +++SN             TSL+ + +  N +  S P   
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.9 bits (91), Expect = 9e-04
 Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 11/105 (10%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           LD + + +   F      L ++ S  + S                 +HL + +  F    
Sbjct: 267 LDYYLDDIIDLFN----CLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFP 320

Query: 100 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 144
              L SLK    L  + N           +L  L FL+LS N   
Sbjct: 321 TLKLKSLK---RLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLS 360

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.6 bits (171), Expect = 3e-14
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 11/147 (7%)

Query: 4   PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVS 63
            +       +     K  ++ TV +  L  +T    L      +       V  L +L  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTT---LQADRLGIKS--IDGVEYLNNLTQ 72

Query: 64  LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 123
           ++ S+N  +   P  L   T L  + M +N      P  L++L ++T L L  N ++   
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128

Query: 124 PQYLENLSFLSFLNLSYNHFEGKVPIE 150
           P  L+NL+ L+ L LS N       + 
Sbjct: 129 P--LKNLTNLNRLELSSNTISDISALS 153

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 12/150 (8%)

Query: 1   NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKH 60
           +   +L    +L  L+   N+++   P   L  + R   LD+  N +S    + +  L +
Sbjct: 147 SDISALSGLTSLQQLS-FGNQVTDLKPLANLTTLER---LDISSNKVSD--ISVLAKLTN 200

Query: 61  LVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
           L SL  ++N  S   P  LG  T+L+ LS+  N        TL+SL ++T+LDL+ N +S
Sbjct: 201 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 256

Query: 121 GHIPQYLENLSFLSFLNLSYNHFEGKVPIE 150
              P  L  L+ L+ L L  N      P+ 
Sbjct: 257 NLAP--LSGLTKLTELKLGANQISNISPLA 284

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 38/164 (23%), Positives = 60/164 (36%), Gaps = 12/164 (7%)

Query: 4   PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVS 63
             L     L  L   +N+L    P   L+ +T    L L+ N +S    + V +L  L  
Sbjct: 281 SPLAGLTALTNLELNENQLEDISPISNLKNLTY---LTLYFNNISD--ISPVSSLTKLQR 335

Query: 64  LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 123
           L   +N  S    ++L   T++  LS   N  +   P  L++L  IT+L L+    +   
Sbjct: 336 LFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391

Query: 124 PQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENL 167
             Y  N   +S  N   N     +    I +           NL
Sbjct: 392 VNYKAN---VSIPNTVKNVTGALIAPATISDGGSYTEPDITWNL 432

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.1 bits (154), Expect = 7e-12
 Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 12/150 (8%)

Query: 1   NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKH 60
                +    NL  +    N+L+   P   L+ +T+ V + + +N ++      + NL +
Sbjct: 59  KSIDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIAD--ITPLANLTN 113

Query: 61  LVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
           L  L + +N  +   P  L   T+L  L +  N+ +    S LS L S+ +L    N ++
Sbjct: 114 LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVT 168

Query: 121 GHIPQYLENLSFLSFLNLSYNHFEGKVPIE 150
              P  L NL+ L  L++S N       + 
Sbjct: 169 DLKP--LANLTTLERLDISSNKVSDISVLA 196

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 9/161 (5%)

Query: 4   PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVS 63
             + N +NL  LT   N +S   P   L  + R   L  ++N +S    + + NL ++  
Sbjct: 303 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQR---LFFYNNKVSD--VSSLANLTNINW 357

Query: 64  LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 123
           L    N  S   P  L   T +  L + D ++T +  +  +++ SI     +        
Sbjct: 358 LSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANV-SIPNTVKNVTGAL-IA 413

Query: 124 PQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN 164
           P  + +    +  ++++N       +   F+    I     
Sbjct: 414 PATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT 454

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 8/112 (7%)

Query: 39  LLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGS 98
                D  ++  F      L   +   +     +  +         +  L          
Sbjct: 6   ATITQDTPINQIFTDT--ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-- 59

Query: 99  IPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE 150
               +  L ++T+++ S N L+   P  L+NL+ L  + ++ N      P+ 
Sbjct: 60  SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA 109

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.8 bits (130), Expect = 8e-09
 Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 10/150 (6%)

Query: 4   PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVS 63
             + +   L  L    NK+S       L  I     L    N +S   P  + NL  +  
Sbjct: 325 SPVSSLTKLQRLFFYNNKVSDVSSLANLTNINW---LSAGHNQISDLTP--LANLTRITQ 379

Query: 64  LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 123
           L ++   ++          +    +     +     P+T+S   S TE D++ N  S   
Sbjct: 380 LGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSY-T 436

Query: 124 PQYLENLSFLSFLNLSYNHFEGKV--PIEA 151
            +     S    +      F G V  P++A
Sbjct: 437 NEVSYTFSQPVTIGKGTTTFSGTVTQPLKA 466

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 6/137 (4%)

Query: 6   LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLD 65
           +    N+  LT      +   P   L  + R   L +    ++      +  L  L  LD
Sbjct: 62  IEYAHNIKDLTINNIHATNYNPISGLSNLER---LRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 66  ISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ 125
           IS +     I T +     +  + +  N     I   L +L  +  L++  + +  +   
Sbjct: 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG- 176

Query: 126 YLENLSFLSFLNLSYNH 142
            +E+   L+ L      
Sbjct: 177 -IEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 5e-08
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 20/106 (18%)

Query: 56  GNLKHLVSLDISSNMFSGEIP--------------------TTLGGCTSLEHLSMQDNSF 95
             +  L  + +++   +                          + G ++LE L +     
Sbjct: 41  AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDV 100

Query: 96  TGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 141
           T      LS L S+T LD+S +     I   +  L  ++ ++LSYN
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 4/116 (3%)

Query: 6   LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLD 65
           +    NL  L      ++      L  + T   LLD+  +        ++  L  + S+D
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGL-TSLTLLDISHSAHDDSILTKINTLPKVNSID 142

Query: 66  ISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 121
           +S N    +I   L     L+ L++Q +         +     + +L      + G
Sbjct: 143 LSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 67.8 bits (166), Expect = 1e-13
 Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 10/164 (6%)

Query: 1   NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKH 60
           N   +L     +  L    N ++  V   +   +T    L L  N L+    A + N   
Sbjct: 196 NLLSTLAIPIAVEELDASHNSIN-VVRGPVNVELTI---LKLQHNNLTD--TAWLLNYPG 249

Query: 61  LVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
           LV +D+S N     +         LE L + +N    ++      + ++  LDLS N+L 
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

Query: 121 GHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN 164
            H+ +       L  L L +N     + +    ++ K ++L  N
Sbjct: 309 -HVERNQPQFDRLENLYLDHNSIV-TLKLST-HHTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.1 bits (146), Expect = 7e-11
 Identities = 26/143 (18%), Positives = 44/143 (30%), Gaps = 3/143 (2%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHL 61
                   N  ++T   + +   +P  LL    +  LL+L D  +              +
Sbjct: 38  GFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTI 95

Query: 62  VSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 121
             L +  N      P        L  L ++ N  +        +   +T L +S NNL  
Sbjct: 96  QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155

Query: 122 HIPQYLENLSFLSFLNLSYNHFE 144
                 +  + L  L LS N   
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 6/118 (5%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
              L N   L+ +    N+L   +       + R   L + +N L          +  L 
Sbjct: 241 TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 298

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
            LD+S N     +         LE+L +  NS   ++   LS+  ++  L LS N+  
Sbjct: 299 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 4e-09
 Identities = 16/105 (15%), Positives = 34/105 (32%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           + +       +F  E   L +   +   ++         L     +E L++ D       
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 85

Query: 100 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 144
               +   +I +L +  N +    P   +N+  L+ L L  N   
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 14/142 (9%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             +     +L  L    N+L+  V   L+  +      ++  NLLS      +     + 
Sbjct: 158 DDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFH---ANVSYNLLS-----TLAIPIAVE 208

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            LD S N  +  +         L  L +Q N+ T    + L +   + E+DLS N L   
Sbjct: 209 ELDASHNSIN-VVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI 263

Query: 123 IPQYLENLSFLSFLNLSYNHFE 144
           +      +  L  L +S N   
Sbjct: 264 MYHPFVKMQRLERLYISNNRLV 285

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 7/91 (7%), Positives = 27/91 (29%)

Query: 52  PAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITE 111
            + +        + I                 + + ++ ++++      + L S + +  
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 112 LDLSRNNLSGHIPQYLENLSFLSFLNLSYNH 142
           L+L+   +             +  L + +N 
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 104

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 8/70 (11%), Positives = 21/70 (30%)

Query: 75  IPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLS 134
           I + L        + +   +          +L +   +    + +       L++   + 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 135 FLNLSYNHFE 144
            LNL+    E
Sbjct: 73  LLNLNDLQIE 82

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.4 bits (162), Expect = 6e-13
 Identities = 33/167 (19%), Positives = 56/167 (33%), Gaps = 9/167 (5%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHL 61
             S    + L LL         T+ ++  R +    +LDL  + +      +    L HL
Sbjct: 41  ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHL 99

Query: 62  VSLDISSNMFSGEI--PTTLGGCTSLEHLSMQDNSFTG-SIPSTLSSLKSITELDLSRNN 118
             L +     S  +          +L  L +  N      +  +   L S+  +D S N 
Sbjct: 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159

Query: 119 LSGHIPQYLENLSF--LSFLNLSYNHFEGKVP--IEAIFNSTKGISL 161
           +       LE L    LSF +L+ N    +V        N  + + L
Sbjct: 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 3/144 (2%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVL--LDLFDNLLSGHFPAEVGNLKH 60
             SL    +++      + +     +     + RS +  LDL    +          LK 
Sbjct: 233 AFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD 291

Query: 61  LVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
           L  L+++ N  +        G  +L+ L++  N       S    L  +  +DL +N+++
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

Query: 121 GHIPQYLENLSFLSFLNLSYNHFE 144
               Q  + L  L  L+L  N   
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.4 bits (157), Expect = 3e-12
 Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 11/170 (6%)

Query: 1   NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKH 60
           N   ++    ++  +    NKL  T+P+  L      +  +  +NL   +F      + H
Sbjct: 372 NALTTIHFIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLL---RVPH 427

Query: 61  LVSLDISSNMFSG-EIPTTLGGCTSLEHLSMQDNSFTGSI-----PSTLSSLKSITELDL 114
           L  L ++ N FS      T     SLE L + +N    +            L  +  L L
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487

Query: 115 SRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN 164
           + N L+   P    +L+ L  L+L+ N     +    +  + + + +  N
Sbjct: 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDISRN 536

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.6 bits (147), Expect = 6e-11
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 1/102 (0%)

Query: 57  NLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI-PSTLSSLKSITELDLS 115
            L     L +S N       ++      L+ L +       +I      +L ++  LDL 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 116 RNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTK 157
            + +    P   + L  L  L L +      V  +  F + K
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.5 bits (139), Expect = 6e-10
 Identities = 43/220 (19%), Positives = 81/220 (36%), Gaps = 28/220 (12%)

Query: 5   SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-----GNLK 59
            L    +L +L   +N+ S     Q          L L +N+L   +  E+       L 
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480

Query: 60  HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNL 119
           HL  L ++ N  +   P      T+L  LS+  N  T    + L +  ++  LD+SRN L
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILDISRNQL 538

Query: 120 SGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFN--STKGISLVGNENLCGGSRKSKFS 177
               P    +   LS L++++N F  +  +    N  +   +++ G            FS
Sbjct: 539 LAPNPDVFVS---LSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFS 595

Query: 178 ----------------ILIKVVIQVIVLCLILVVFFIVVY 201
                           +L  +   + ++C + +  F++  
Sbjct: 596 GVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTI 635

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 28/153 (18%), Positives = 46/153 (30%), Gaps = 23/153 (15%)

Query: 1   NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVL--LDLFDNLLSGHFPAEVGNL 58
              PS G   +L  +    N++   V    L  +    L    L  N L      + G  
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

Query: 59  ------KHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITEL 112
                   L  LD+S N ++ +I                 N+ + S   +L     I   
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNF------------SNAISKSQAFSLILAHHIMGA 245

Query: 113 DLSRNNLSGHIPQYLENL--SFLSFLNLSYNHF 143
               +N+          L  S +  L+LS+   
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 66.1 bits (161), Expect = 6e-13
 Identities = 32/141 (22%), Positives = 47/141 (33%), Gaps = 21/141 (14%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P        L + +     L   +P  L +       L +F N L+   P     L+   
Sbjct: 97  PVLPPGLLELSIFSNPLTHLP-ALPSGLCK-------LWIFGNQLT-SLPVLPPGLQ--- 144

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            L +S N  +  +P        L  L   +N  T S+P   S L    EL +S N L+  
Sbjct: 145 ELSVSDNQLA-SLPALPS---ELCKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-S 195

Query: 123 IPQYLENLSFLSFLNLSYNHF 143
           +P     L  L   N      
Sbjct: 196 LPTLPSELYKLWAYNNRLTSL 216

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.4 bits (154), Expect = 6e-12
 Identities = 34/159 (21%), Positives = 54/159 (33%), Gaps = 35/159 (22%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P        L       N+L+      L  + +    L + DN L+   P     L    
Sbjct: 157 PALPSELCKLWAY---NNQLT-----SLPMLPSGLQELSVSDNQLA-SLPTLPSELY--- 204

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSI------------- 109
            L   +N  +  +P        L+ L +  N  T S+P   S LK +             
Sbjct: 205 KLWAYNNRLT-SLPALPS---GLKELIVSGNRLT-SLPVLPSELKELMVSGNRLTSLPML 259

Query: 110 ----TELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 144
                 L + RN L+  +P+ L +LS  + +NL  N   
Sbjct: 260 PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.1 bits (148), Expect = 4e-11
 Identities = 32/142 (22%), Positives = 50/142 (35%), Gaps = 17/142 (11%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P        L       N+L+      L  + +    L +  N L+   P     LK   
Sbjct: 197 PTLPSELYKLWAY---NNRLT-----SLPALPSGLKELIVSGNRLT-SLPVLPSELK--- 244

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            L +S N  +  +P        L  LS+  N  T  +P +L  L S T ++L  N LS  
Sbjct: 245 ELMVSGNRLT-SLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299

Query: 123 IPQYLENLSFLSFLNLSYNHFE 144
             Q L  ++     +     F+
Sbjct: 300 TLQALREITSAPGYSGPIIRFD 321

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.9 bits (132), Expect = 4e-09
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 15/105 (14%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           L++ ++ L+   P  +    H+ +L I  N  +  +P        L  L +  N  T S+
Sbjct: 45  LNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQLT-SL 96

Query: 100 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 144
           P     L  ++       +L           S L  L +  N   
Sbjct: 97  PVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQLT 134

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 13/138 (9%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P      + LI+     N+L+ ++P     +      L +  N L+   P     L  L 
Sbjct: 217 PALPSGLKELIVS---GNRLT-SLPVLPSELKE----LMVSGNRLT-SLPMLPSGLLSL- 266

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
              +  N  +  +P +L   +S   ++++ N  +      L  + S              
Sbjct: 267 --SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMA 323

Query: 123 IPQYLENLSFLSFLNLSY 140
                     L      +
Sbjct: 324 GASAPRETRALHLAAADW 341

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.4 bits (160), Expect = 7e-13
 Identities = 26/180 (14%), Positives = 52/180 (28%), Gaps = 6/180 (3%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
               G    +  L    N++      +L         L+L  N +      +V     L 
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLK 194

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
           +LD+SSN  +  +         +  +S+++N     I   L   +++   DL  N     
Sbjct: 195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGGSRKSKFSILIKV 182
             +            ++    + K+  +     T           C          LI +
Sbjct: 253 TLRDF-FSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 9/126 (7%)

Query: 39  LLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGS 98
           +  + D+ L     +   +  ++  LD+S N  S      L   T LE L++  N     
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-E 72

Query: 99  IPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKG 158
               L SL ++  LDL+ N +       L     +  L+ + N+   +V         K 
Sbjct: 73  TLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCS-RGQGKKN 124

Query: 159 ISLVGN 164
           I L  N
Sbjct: 125 IYLANN 130

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 29/141 (20%), Positives = 51/141 (36%), Gaps = 12/141 (8%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
              L     L LL    N L  T+  + L  +     LDL +N +      E+     + 
Sbjct: 51  AADLAPFTKLELLNLSSNVLYETLDLESLSTLRT---LDLNNNYVQ-----ELLVGPSIE 102

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG- 121
           +L  ++N  S  +  + G     +++ + +N  T            +  LDL  N +   
Sbjct: 103 TLHAANNNIS-RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159

Query: 122 HIPQYLENLSFLSFLNLSYNH 142
           +  +   +   L  LNL YN 
Sbjct: 160 NFAELAASSDTLEHLNLQYNF 180

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 57  NLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR 116
           N        ++ +     + +      +++ L +  N  +    + L+    +  L+LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 117 NNLSGHIPQYLENLSFLSFLNLSYNHFE 144
           N L       LE+LS L  L+L+ N+ +
Sbjct: 68  NVLY-ETLD-LESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 8/60 (13%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 98  SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTK 157
           +I     +        ++ ++L   +    ++   +  L+LS N    ++    +   TK
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTK 59

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 5/144 (3%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHL 61
                +  NL  L    N L   +  +    +     L L    L+   P E   +L  L
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGL 178

Query: 62  VSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 121
           + L +     +     +      L+ L +    +  ++        ++T L ++  NL+ 
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT- 237

Query: 122 HIPQY-LENLSFLSFLNLSYNHFE 144
            +P   + +L +L FLNLSYN   
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 3/139 (2%)

Query: 4   PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVS 63
           P    C        C  K    VP  +         LDL  N +      E  +  HL  
Sbjct: 4   PPRCECSAQDRAVLCHRKRFVAVPEGIPTETRL---LDLGKNRIKTLNQDEFASFPHLEE 60

Query: 64  LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 123
           L+++ N+ S   P       +L  L ++ N          + L ++T+LD+S N +   +
Sbjct: 61  LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL 120

Query: 124 PQYLENLSFLSFLNLSYNH 142
               ++L  L  L +  N 
Sbjct: 121 DYMFQDLYNLKSLEVGDND 139

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.3 bits (149), Expect = 3e-11
 Identities = 20/140 (14%), Positives = 45/140 (32%), Gaps = 3/140 (2%)

Query: 6   LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHLVSL 64
                NL  L   +NK+   +   + + +     L++ DN L  +        L  L  L
Sbjct: 100 FTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQL 157

Query: 65  DISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP 124
            +     +      L     L  L ++  +       +   L  +  L++S       + 
Sbjct: 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217

Query: 125 QYLENLSFLSFLNLSYNHFE 144
                   L+ L++++ +  
Sbjct: 218 PNCLYGLNLTSLSITHCNLT 237

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 5/144 (3%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             +L +   LI+L      ++  +     + + R  +L++                 +L 
Sbjct: 169 TEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227

Query: 63  SLDISSNMFSGEIPT-TLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 121
           SL I+    +  +P   +     L  L++  N  +    S L  L  + E+ L    L+ 
Sbjct: 228 SLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA- 285

Query: 122 HIPQY-LENLSFLSFLNLSYNHFE 144
            +  Y    L++L  LN+S N   
Sbjct: 286 VVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 5/144 (3%)

Query: 2   RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKH 60
           R  S      L +L         T+    L  +  + L  +    L+   P     +L +
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL-SITHCNLT-AVPYLAVRHLVY 249

Query: 61  LVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
           L  L++S N  S    + L     L+ + +         P     L  +  L++S N L+
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

Query: 121 GHIPQYL-ENLSFLSFLNLSYNHF 143
             + + +  ++  L  L L  N  
Sbjct: 310 -TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 5/124 (4%)

Query: 20  NKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT-T 78
           N++  T+ +           L+L +N++S   P    NL +L +L + SN     IP   
Sbjct: 42  NRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGV 99

Query: 79  LGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQY-LENLSFLSFLN 137
             G ++L  L + +N     +      L ++  L++  N+L  +I       L+ L  L 
Sbjct: 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLT 158

Query: 138 LSYN 141
           L   
Sbjct: 159 LEKC 162

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 19/85 (22%), Positives = 30/85 (35%)

Query: 60  HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNL 119
               LD+  N               LE L + +N  +   P   ++L ++  L L  N L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 120 SGHIPQYLENLSFLSFLNLSYNHFE 144
                     LS L+ L++S N   
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIV 117

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 3/119 (2%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHL 61
            P+     NL  L+     L+  VP   +R +     L+L  N +S      +   L  L
Sbjct: 217 TPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRL 274

Query: 62  VSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
             + +     +   P    G   L  L++  N  T    S   S+ ++  L L  N L+
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.2 bits (159), Expect = 1e-12
 Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 6/145 (4%)

Query: 2   RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKH 60
           +  +  +  +L +L   +N +   +       +     L+LFDN L+   P+     L  
Sbjct: 91  QADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSK 148

Query: 61  LVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPS-TLSSLKSITELDLSRNNL 119
           L  L + +N              SL  L + +      I       L ++  L+L   N+
Sbjct: 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208

Query: 120 SGHIPQYLENLSFLSFLNLSYNHFE 144
              +P  L  L  L  L +S NHF 
Sbjct: 209 K-DMP-NLTPLVGLEELEMSGNHFP 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.8 bits (145), Expect = 9e-11
 Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 5   SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHLVS 63
           +     +L  L    N L+  +P      +++   L L +N +    P+     +  L+ 
Sbjct: 118 AFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMR 175

Query: 64  LDISSNMFSGEIPT-TLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
           LD+        I      G  +L++L++   +    +P  L+ L  + EL++S N+    
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEI 233

Query: 123 IPQYLENLSFLSFLNLSYNH 142
            P     LS L  L +  + 
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQ 253

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 12/131 (9%)

Query: 19  KNKLSGTVPRQLLRIITRSVLLDLFDNLLS----GHFPAEVGNLKHLVSLDISSNMFSGE 74
           +N +   +     R +    +L L  N +     G F      L  L +L++  N  +  
Sbjct: 84  ENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAF----NGLASLNTLELFDNWLT-V 137

Query: 75  IPT-TLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQY-LENLSF 132
           IP+      + L  L +++N          + + S+  LDL       +I +   E L  
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197

Query: 133 LSFLNLSYNHF 143
           L +LNL   + 
Sbjct: 198 LKYLNLGMCNI 208

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.7 bits (137), Expect = 8e-10
 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 4/140 (2%)

Query: 3   PPSLGNCQNLILLT-TCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHL 61
             +     +L+ L      KL   +       +     L+L    +    P  +  L  L
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGL 220

Query: 62  VSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 121
             L++S N F    P +  G +SL+ L + ++  +    +    L S+ EL+L+ NNLS 
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280

Query: 122 HIPQYLENLSFLSFLNLSYN 141
                   L +L  L+L +N
Sbjct: 281 LPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 40  LDLFDNLLSGHFPAEV-GNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGS 98
           L++  N             L  L  L + ++  S        G  SL  L++  N+ +  
Sbjct: 223 LEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281

Query: 99  IPSTLSSLKSITELDLSRNNL 119
                + L+ + EL L  N  
Sbjct: 282 PHDLFTPLRYLVELHLHHNPW 302

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.9 bits (158), Expect = 2e-12
 Identities = 25/179 (13%), Positives = 50/179 (27%), Gaps = 6/179 (3%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
               G    +  L    N++      +L         L+L  N +      +V     L 
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLK 194

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
           +LD+SSN  +  +         +  +S+++N     I   L   +++   DL  N     
Sbjct: 195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGGSRKSKFSILIK 181
             +            ++    +  +  +     T           C          LI 
Sbjct: 253 TLRDF-FSKNQRVQTVAKQTVKK-LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 7/106 (6%)

Query: 39  LLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGS 98
           +  + D+ L     +   +  ++  LD+S N  S      L   T LE L++  N     
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE- 72

Query: 99  IPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 144
               L SL ++  LDL+ N +       L     +  L+ + N+  
Sbjct: 73  -TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.2 bits (146), Expect = 5e-11
 Identities = 29/141 (20%), Positives = 51/141 (36%), Gaps = 12/141 (8%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
              L     L LL    N L  T+  + L  +     LDL +N +      E+     + 
Sbjct: 51  AADLAPFTKLELLNLSSNVLYETLDLESLSTLRT---LDLNNNYVQ-----ELLVGPSIE 102

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG- 121
           +L  ++N  S  +  + G     +++ + +N  T            +  LDL  N +   
Sbjct: 103 TLHAANNNIS-RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159

Query: 122 HIPQYLENLSFLSFLNLSYNH 142
           +  +   +   L  LNL YN 
Sbjct: 160 NFAELAASSDTLEHLNLQYNF 180

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.2 bits (146), Expect = 6e-11
 Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 56  GNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLS 115
            N        ++ +     + +      +++ L +  N  +    + L+    +  L+LS
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 116 RNNLSGHIPQYLENLSFLSFLNLSYNHFE 144
            N L   +   LE+LS L  L+L+ N+ +
Sbjct: 67  SNVLYETLD--LESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.2 bits (125), Expect = 4e-08
 Identities = 20/71 (28%), Positives = 28/71 (39%)

Query: 75  IPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLS 134
           I          +   + D+S   ++ S   S  ++ ELDLS N LS      L   + L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 135 FLNLSYNHFEG 145
            LNLS N    
Sbjct: 62  LLNLSSNVLYE 72

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.0 bits (156), Expect = 4e-12
 Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 8/146 (5%)

Query: 2   RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKH 60
           +  S  + ++L +L   +N +  T+       +     L+LFDN L+   P      L  
Sbjct: 80  KVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSK 137

Query: 61  LVSLDISSNMFSGEIPT-TLGGCTSLEHLSMQDNSFTGSIPS-TLSSLKSITELDLSRNN 118
           L  L + +N     IP+       SL  L + +      I       L ++  L+L+  N
Sbjct: 138 LKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196

Query: 119 LSGHIPQYLENLSFLSFLNLSYNHFE 144
           L   IP  L  L  L  L+LS NH  
Sbjct: 197 LR-EIP-NLTPLIKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 36/140 (25%), Positives = 53/140 (37%), Gaps = 7/140 (5%)

Query: 4   PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVS 63
           PS+ +C N      C  K    VP  +         L+L +N +         +L+HL  
Sbjct: 36  PSVCSCSNQFSKVICVRKNLREVPDGISTNTRL---LNLHENQIQIIKVNSFKHLRHLEI 92

Query: 64  LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPS-TLSSLKSITELDLSRNNLSGH 122
           L +S N           G  +L  L + DN  T +IP+     L  + EL L  N +   
Sbjct: 93  LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-S 150

Query: 123 IPQYL-ENLSFLSFLNLSYN 141
           IP Y    +  L  L+L   
Sbjct: 151 IPSYAFNRIPSLRRLDLGEL 170

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.7 bits (137), Expect = 8e-10
 Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 10/129 (7%)

Query: 20  NKLSGTVPRQLLRIITRSVLLDLFDNLLS----GHFPAEVGNLKHLVSLDISSNMFSGEI 75
           N++   +     + +    +L L  N +     G F      L +L +L++  N  +   
Sbjct: 74  NQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAF----NGLANLNTLELFDNRLTTIP 128

Query: 76  PTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQY-LENLSFLS 134
                  + L+ L +++N          + + S+  LDL       +I +   E LS L 
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188

Query: 135 FLNLSYNHF 143
           +LNL+  + 
Sbjct: 189 YLNLAMCNL 197

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 2/102 (1%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           L+L    L    P  +  L  L  LD+S N  S   P +  G   L+ L M  +      
Sbjct: 190 LNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

Query: 100 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 141
            +   +L+S+ E++L+ NNL+         L  L  ++L +N
Sbjct: 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 2/81 (2%)

Query: 40  LDLFDNLLSGHFPAEV-GNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGS 98
           LDL  N LS          L HL  L +  +              SL  +++  N+ T  
Sbjct: 212 LDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270

Query: 99  IPSTLSSLKSITELDLSRNNL 119
                + L  +  + L  N  
Sbjct: 271 PHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 83  TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH 142
           T+   L++ +N       ++   L+ +  L LSRN++          L+ L+ L L  N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.7 bits (153), Expect = 5e-12
 Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 3/144 (2%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHL 61
             +    + L  L    + L       +   +   + LD+            +   L  L
Sbjct: 94  SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSL 152

Query: 62  VSLDISSNMFSGEI-PTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
             L ++ N F     P       +L  L +         P+  +SL S+  L++S NN  
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212

Query: 121 GHIPQYLENLSFLSFLNLSYNHFE 144
                  + L+ L  L+ S NH  
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 3/138 (2%)

Query: 8   NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHLVSLDI 66
           + +NLI L              +   ++   +L +  N    +F  ++   L++L  LD+
Sbjct: 124 SLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 67  SSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQY 126
           S        PT     +SL+ L+M  N+F          L S+  LD S N++     Q 
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

Query: 127 LENL-SFLSFLNLSYNHF 143
           L++  S L+FLNL+ N F
Sbjct: 243 LQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIP--TTLGGCTSLEHLSMQDNSFTG 97
           LDL  N +     +    L+ L  LD   +    ++   +      +L +L +       
Sbjct: 83  LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRV 140

Query: 98  SIPSTLSSLKSITELDLSRNNLSGHIPQY-LENLSFLSFLNLSYNHFE 144
           +     + L S+  L ++ N+   +        L  L+FL+LS    E
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 60  HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDN--SFTGSIPSTLSSLKSITELDLSRN 117
               L++ SN             T L  LS+  N  SF G    +     S+  LDLS N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 118 NLSGHIPQYLENLSFLSFLNLSYNH 142
            +   +      L  L  L+  +++
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSN 112

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 3/117 (2%)

Query: 6   LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHLVSL 64
                +L +L    N         +   +     LDL    L          +L  L  L
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVL 204

Query: 65  DISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSL-KSITELDLSRNNLS 120
           ++S N F            SL+ L    N    S    L     S+  L+L++N+ +
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            +  +S   +  +PT +   +S   L ++ N            L  +T+L LS N LS  
Sbjct: 11  EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 123 --IPQYLENLSFLSFLNLSYNH 142
               Q     + L +L+LS+N 
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNG 89

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 8/145 (5%)

Query: 2   RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKH 60
              S   C+NL +L    N L+  +       +     LDL DN             L  
Sbjct: 48  PAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106

Query: 61  LVSLDISSNMFSGEIPT-TLGGCTSLEHLSMQDNSFTGSIPS-TLSSLKSITELDLSRNN 118
           L +L +       E+      G  +L++L +QDN+   ++P  T   L ++T L L  N 
Sbjct: 107 LHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNR 164

Query: 119 LSGHIPQY-LENLSFLSFLNLSYNH 142
           +S  +P+     L  L  L L  N 
Sbjct: 165 IS-SVPERAFRGLHSLDRLLLHQNR 188

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 35/142 (24%), Positives = 52/142 (36%), Gaps = 7/142 (4%)

Query: 4   PSLGNCQNLILLTT-CKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P    C N   +TT C  +    VP  +     R   + L  N +S    A     ++L 
Sbjct: 3   PGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQR---IFLHGNRISHVPAASFRACRNLT 59

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPS-TLSSLKSITELDLSRNNLSG 121
            L + SN+ +        G   LE L + DN+   S+   T   L  +  L L R  L  
Sbjct: 60  ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ- 118

Query: 122 HIPQY-LENLSFLSFLNLSYNH 142
            +       L+ L +L L  N 
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNA 140

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 31/128 (24%), Positives = 45/128 (35%), Gaps = 6/128 (4%)

Query: 20  NKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIP-TT 78
           N++S  VP    R      +L L  N+L+    A    L  L  LD+S N     +   T
Sbjct: 42  NRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100

Query: 79  LGGCTSLEHLSMQDNSFTGSIPS-TLSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFL 136
             G   L  L +        +       L ++  L L  N L   +P     +L  L+ L
Sbjct: 101 FHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHL 158

Query: 137 NLSYNHFE 144
            L  N   
Sbjct: 159 FLHGNRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 35/135 (25%), Positives = 48/135 (35%), Gaps = 3/135 (2%)

Query: 8   NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHLVSLDI 66
               L  L   +  L   +   L R +     L L DN L    P +   +L +L  L +
Sbjct: 103 GLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFL 160

Query: 67  SSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQY 126
             N  S        G  SL+ L +  N      P     L  +  L L  NNLS    + 
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220

Query: 127 LENLSFLSFLNLSYN 141
           L  L  L +L L+ N
Sbjct: 221 LAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.4 bits (121), Expect = 8e-08
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 1/85 (1%)

Query: 61  LVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
              + +  N  S     +   C +L  L +  N       +  + L  + +LDLS N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 121 GHIPQY-LENLSFLSFLNLSYNHFE 144
             +       L  L  L+L     +
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQ 118

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 5/102 (4%)

Query: 20  NKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHLVSLDISSNMFSGEIPTT 78
           N L   +P    R +     L L  N +S   P      L  L  L +  N  +   P  
Sbjct: 139 NALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 79  LGGCTSLEHLSMQDNSFTGSIPS-TLSSLKSITELDLSRNNL 119
                 L  L +  N+ + ++P+  L+ L+++  L L+ N  
Sbjct: 197 FRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.9 bits (150), Expect = 2e-11
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 18/135 (13%)

Query: 10  QNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSN 69
           +   L    +N+    +   L+   +    L L    LS   P  +     +  L+I+ N
Sbjct: 37  EKQALPGENRNEAVSLLKECLINQFSE---LQLNRLNLS-SLPDNLP--PQITVLEITQN 90

Query: 70  MFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLEN 129
                +P       SLE+L   DN  + ++P   +SLK    LD+  N L+  +P   E 
Sbjct: 91  ALI-SLPELPA---SLEYLDACDNRLS-TLPELPASLK---HLDVDNNQLT-MLP---EL 138

Query: 130 LSFLSFLNLSYNHFE 144
            + L ++N   N   
Sbjct: 139 PALLEYINADNNQLT 153

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 60.0 bits (145), Expect = 9e-11
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 18/146 (12%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P      + +       N+L+      L  + T   +L + +N L+   P    +L+ L 
Sbjct: 136 PELPALLEYINA---DNNQLT-----MLPELPTSLEVLSVRNNQLT-FLPELPESLEAL- 185

Query: 63  SLDISSNMFSGEIPTTLGGCTSLE----HLSMQDNSFTGSIPSTLSSLKSITELDLSRNN 118
             D+S+N+    +P         E        ++N  T  IP  + SL     + L  N 
Sbjct: 186 --DVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241

Query: 119 LSGHIPQYLENLSFLSFLNLSYNHFE 144
           LS  I + L   +     +    +F 
Sbjct: 242 LSSRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 8/130 (6%)

Query: 3   PPSLGNCQNLILLTTCKNKLSG--TVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKH 60
           P    + + L +     N L     VP +        +     +N ++ H P  + +L  
Sbjct: 176 PELPESLEALDV---STNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDP 231

Query: 61  LVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
             ++ +  N  S  I  +L   T+          F+ S      +       D       
Sbjct: 232 TCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ--NTLHRPLADAVTAWFP 289

Query: 121 GHIPQYLENL 130
            +    +  +
Sbjct: 290 ENKQSDVSQI 299

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 14/140 (10%)

Query: 4   PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVS 63
           P L N   L ++    N L   +P     +      +   +N L    P E+ NL  L +
Sbjct: 147 PELQNSSFLKIIDVDNNSLK-KLPDLPPSLEF----IAAGNNQLE-ELP-ELQNLPFLTA 199

Query: 64  LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 123
           +   +N    ++P       SLE +   +N         L +L  +T +    N L   +
Sbjct: 200 IYADNNSLK-KLPDLPL---SLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TL 252

Query: 124 PQYLENLSFLSFLNLSYNHF 143
           P    +L  L+  +      
Sbjct: 253 PDLPPSLEALNVRDNYLTDL 272

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 20/142 (14%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P    + ++L++       LS  +P  L         L + +N L    P E+ N   L 
Sbjct: 107 PELPQSLKSLLVDNNNLKALSD-LPPLL-------EYLGVSNNQLE-KLP-ELQNSSFLK 156

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            +D+ +N    ++P       SLE ++  +N     +P  L +L  +T +    N+L   
Sbjct: 157 IIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-K 209

Query: 123 IPQYLENLSFLSFLNLSYNHFE 144
           +P    +L  +       N  E
Sbjct: 210 LPDLPLSLESI---VAGNNILE 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 29/189 (15%), Positives = 52/189 (27%), Gaps = 54/189 (28%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVL----------------------- 39
           P    N ++        ++     P         +V                        
Sbjct: 27  PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86

Query: 40  ---------LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT------------- 77
                    L    N L+   P    +LK L+  + +    S   P              
Sbjct: 87  PELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK 145

Query: 78  --TLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSF 135
              L   + L+ + + +NS    +P    SL     +    N L   +P+ L+NL FL+ 
Sbjct: 146 LPELQNSSFLKIIDVDNNSLK-KLPDLPPSL---EFIAAGNNQLE-ELPE-LQNLPFLTA 199

Query: 136 LNLSYNHFE 144
           +    N  +
Sbjct: 200 IYADNNSLK 208

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 34/142 (23%), Positives = 51/142 (35%), Gaps = 21/142 (14%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
            P L N   L  +    N L  T+P     +      L++ DN L+   P    +L  L 
Sbjct: 230 LPELQNLPFLTTIYADNNLLK-TLPDLPPSLEA----LNVRDNYLT-DLPELPQSLTFLD 283

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
             +   +  S   P       +L +L+   N    S+     SL    EL++S N L   
Sbjct: 284 VSENIFSGLSELPP-------NLYYLNASSNEIR-SLCDLPPSL---EELNVSNNKLI-E 331

Query: 123 IPQYLENLSFLSFLNLSYNHFE 144
           +P        L  L  S+NH  
Sbjct: 332 LPALPPR---LERLIASFNHLA 350

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 19/126 (15%)

Query: 32  RIITRSVLLDLFDNLLS-GHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG---------- 80
           R ++ + L +   +  +    P E  N+K       + + +    P   G          
Sbjct: 6   RNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 81  ---GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLN 137
                     L + +   + S+P     L     L  S N+L+  +P+  ++L  L   N
Sbjct: 66  RDCLDRQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDN 120

Query: 138 LSYNHF 143
            +    
Sbjct: 121 NNLKAL 126

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 29/154 (18%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVP------------RQLLRIITRSVLLDLFDNLLSGH 50
           P    +   L +     + LS   P            R L  +      L++ +N L   
Sbjct: 273 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-E 331

Query: 51  FPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSIT 110
            PA    L+ L     S N  + E+P       +L+ L ++ N      P    S++   
Sbjct: 332 LPALPPRLERL---IASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDIPESVED-- 381

Query: 111 ELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 144
              L  N+    +P+  +NL  L   ++  N   
Sbjct: 382 ---LRMNSHLAEVPELPQNLKQL---HVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 25/140 (17%), Positives = 44/140 (31%), Gaps = 21/140 (15%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P      + LI      N L+  VP     +      L +  N L   FP    +++ L 
Sbjct: 333 PALPPRLERLIAS---FNHLA-EVPELPQNLKQ----LHVEYNPLR-EFPDIPESVEDL- 382

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
                 N    E+P       +L+ L ++ N      P    S+    +L ++   +   
Sbjct: 383 ----RMNSHLAEVPELPQ---NLKQLHVETNPLR-EFPDIPESV---EDLRMNSERVVDP 431

Query: 123 IPQYLENLSFLSFLNLSYNH 142
                E    L      ++H
Sbjct: 432 YEFAHETTDKLEDDVFEHHH 451

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 13/142 (9%)

Query: 8   NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHLVSLDI 66
             + L  +      ++ T+P+ L   +T    L L  N ++    A     L +L  L +
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQGLPPSLTE---LHLDGNKIT-KVDAASLKGLNNLAKLGL 223

Query: 67  SSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG----- 121
           S N  S     +L     L  L + +N     +P  L+  K I  + L  NN+S      
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 282

Query: 122 -HIPQYLENLSFLSFLNLSYNH 142
              P Y    +  S ++L  N 
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 26/142 (18%), Positives = 56/142 (39%), Gaps = 7/142 (4%)

Query: 5   SLGNCQNLILLTTCKNKL-SGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVS 63
                  +I++    N L S  +     + + +   + + D  ++   P   G    L  
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTE 196

Query: 64  LDISSNMFSGEIPT-TLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
           L +  N  + ++   +L G  +L  L +  NS +     +L++   + EL L+ N L   
Sbjct: 197 LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 123 IPQYLENLSFLSFLNLSYNHFE 144
           +P  L +  ++  + L  N+  
Sbjct: 255 VPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 8/135 (5%)

Query: 10  QNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLL-SGHFPAEV-GNLKHLVSLDIS 67
           + L  L   +N+++  V + +   + + ++++L  N L S          +K L  + I+
Sbjct: 121 KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 68  SNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPS-TLSSLKSITELDLSRNNLSGHIPQY 126
               +  IP  L    SL  L +  N  T  + + +L  L ++ +L LS N++S      
Sbjct: 180 DTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 127 LENLSFLSFLNLSYN 141
           L N   L  L+L+ N
Sbjct: 236 LANTPHLRELHLNNN 250

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 39  LLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGS 98
           LLDL +N ++     +  NLK+L +L + +N  S   P        LE L +  N     
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114

Query: 99  IPSTLSSLKSITELDLSRNNLSGHIPQY-LENLSFLSFLNLSYNH 142
           +P  +   K++ EL +  N ++  + +     L+ +  + L  N 
Sbjct: 115 LPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNP 156

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 59  KHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNN 118
                LD+ +N  +           +L  L + +N  +   P   + L  +  L LS+N 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 119 LSGHIPQYLENLSFLSFLNLSYNH 142
           L   +P+ +     L  L +  N 
Sbjct: 112 LK-ELPEKM--PKTLQELRVHENE 132

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 3/145 (2%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSG-HFPAEVGNLKHL 61
             +  +  +L  L    N LS ++       ++    L+L  N        +   NL +L
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125

Query: 62  VSLDISSNMFSGEIP-TTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
            +L I +     EI      G TSL  L ++  S       +L S++ I  L L  +  +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 121 GHIPQYLENLSFLSFLNLSYNHFEG 145
             +  + + LS + +L L   +   
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.3 bits (149), Expect = 3e-11
 Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 4/134 (2%)

Query: 25  TVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTS 84
           ++P  L   +     LDL  N ++     ++    +L  L + S+  +           S
Sbjct: 19  SIPSGLTAAMKS---LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75

Query: 85  LEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG-HIPQYLENLSFLSFLNLSYNHF 143
           LEHL + DN  +    S    L S+  L+L  N      +     NL+ L  L +     
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 144 EGKVPIEAIFNSTK 157
             ++        T 
Sbjct: 136 FSEIRRIDFAGLTS 149

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 22/138 (15%), Positives = 38/138 (27%), Gaps = 1/138 (0%)

Query: 6   LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHLVSL 64
            G   +L  L    N         L   +T    L + +              L  L  L
Sbjct: 94  FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153

Query: 65  DISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP 124
           +I +         +L     + HL++  +     +      L S+  L+L   NL+    
Sbjct: 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213

Query: 125 QYLENLSFLSFLNLSYNH 142
             L      S +      
Sbjct: 214 SPLPVDEVSSPMKKLAFR 231

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 3/91 (3%)

Query: 57  NLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR 116
               +  L I       ++ T       ++ ++++++       S    LKS+  LDLS 
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343

Query: 117 NNLS---GHIPQYLENLSFLSFLNLSYNHFE 144
           N +                L  L LS NH  
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 28/147 (19%), Positives = 55/147 (37%), Gaps = 10/147 (6%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLS---GHFPAEVGNLK 59
                  + +  +T   +K+   VP    + +     LDL +NL+        A  G   
Sbjct: 303 STVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361

Query: 60  HLVSLDISSNMFS--GEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRN 117
            L +L +S N      +    L    +L  L +  N+F   +P +    + +  L+LS  
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSST 420

Query: 118 NLSGHIPQYLENLSFLSFLNLSYNHFE 144
            +   +   +     L  L++S N+ +
Sbjct: 421 GIR-VVKTCI--PQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 5/110 (4%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           L +    L          L+ +  + + ++       +      SLE L + +N      
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350

Query: 100 PST---LSSLKSITELDLSRNNLS--GHIPQYLENLSFLSFLNLSYNHFE 144
                   +  S+  L LS+N+L       + L  L  L+ L++S N F 
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           LD+  N      P      + +  L++SS      + T      +LE L + +N+   S 
Sbjct: 392 LDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLD-SF 446

Query: 100 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 144
              L  L    EL +SRN L   +P        L  + +S N  +
Sbjct: 447 SLFLPRL---QELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 1/118 (0%)

Query: 39  LLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGS 98
           LL L   +L      E  +       D + +              ++  L +        
Sbjct: 243 LLKLLRYILE-LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301

Query: 99  IPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNST 156
           + +  S L+ +  + +  + +      + ++L  L FL+LS N    +    +     
Sbjct: 302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 20/151 (13%), Positives = 50/151 (33%), Gaps = 10/151 (6%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
                N  NL  L     +    + R     +T    L++    L  +    + +++ + 
Sbjct: 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG- 121
            L +  +  +  +       +S+ +L ++D +      S L   +  + +       S  
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235

Query: 122 ---------HIPQYLENLSFLSFLNLSYNHF 143
                     + +Y+  LS + F + + N  
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGL 266

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 10/117 (8%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P S    + +  L      +   V   + + +    +LD+ +N L   F      L  L 
Sbjct: 403 PDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLE---VLDVSNNNLD-SFSL---FLPRLQ 454

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNL 119
            L IS N     +P        L  + +  N            L S+ ++ L  N  
Sbjct: 455 ELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 21/157 (13%), Positives = 41/157 (26%), Gaps = 14/157 (8%)

Query: 2   RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHL 61
           R        +L  L      L      Q L+ I     L L  +  +         L  +
Sbjct: 140 RRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198

Query: 62  VSLDISSNMFSGEIPTTLGGCTSLEHL--------SMQDNSFTG--SIPSTLSSLKSITE 111
             L++     +    + L        +         + D SF     +   +  L  +  
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258

Query: 112 LDLSRNNL---SGHIPQYLENLSFLSFLNLSYNHFEG 145
            D + N L   +      +  L  +  + +   H   
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.1 bits (148), Expect = 2e-11
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 8/113 (7%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC----TSLEHLSMQDNSF 95
           L +           +V     L +LD+S N   GE       C     +L+ L++++   
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 96  T---GSIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFE 144
               G   +  ++   +  LDLS N+L         +  S L+ LNLS+   +
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.4 bits (136), Expect = 8e-10
 Identities = 29/150 (19%), Positives = 45/150 (30%), Gaps = 12/150 (8%)

Query: 3   PPSLGNCQNLILLTTCKNKLSG------TVPRQLLRIITRSVLLDLFDNLLSGHFPAEVG 56
              +     L  L    N   G       +       +    L +      SG   A   
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 57  NLKHLVSLDISSNMFSGEIP-TTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLS 115
               L  LD+S N         +    + L  L++        +P  L +   ++ LDLS
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLS 282

Query: 116 RNNLSGHIPQYLENLSFLSFLNLSYNHFEG 145
            N L    P   + L  +  L+L  N F  
Sbjct: 283 YNRLD-RNPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.5 bits (131), Expect = 4e-09
 Identities = 27/156 (17%), Positives = 50/156 (32%), Gaps = 12/156 (7%)

Query: 1   NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVL--LDLFDNLLSGHFPAEVGNL 58
            +   +    +L  LT    ++   +    LR++  S L  L L +  ++G  P  +   
Sbjct: 59  GQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118

Query: 59  KH--LVSLDISSNMFSGE--IPTTLGGC--TSLEHLSMQDNSFTGSIPSTLSSLKSITEL 112
               L  L++ +  ++        L       L+ LS+            +    +++ L
Sbjct: 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178

Query: 113 DLSRNNLSGHIPQY----LENLSFLSFLNLSYNHFE 144
           DLS N   G               L  L L     E
Sbjct: 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.1 bits (130), Expect = 5e-09
 Identities = 31/157 (19%), Positives = 50/157 (31%), Gaps = 15/157 (9%)

Query: 1   NRPPSLGNCQNLILLTTCKNKLSG----TVPRQLLRIITRSVLLDLFDNLLSGHFP---- 52
            R   L   Q  +        ++         + +R+      LDL DN   G       
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194

Query: 53  AEVGNLKHLVSLDISSNMF---SGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSS-LKS 108
                   L  L + +      SG           L+ L +  NS   +  +        
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254

Query: 109 ITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 145
           +  L+LS   L   +P+ L   + LS L+LSYN  + 
Sbjct: 255 LNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.1 bits (122), Expect = 5e-08
 Identities = 29/153 (18%), Positives = 48/153 (31%), Gaps = 12/153 (7%)

Query: 5   SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVL-LDLFDNLLSGH--FPAEVGNL--K 59
            +     L  LT    +++GT P  LL      +  L+L +   +    + AE+      
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 60  HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLS----SLKSITELDLS 115
            L  L I+           +    +L  L + DN   G      +       ++  L L 
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 116 RNN---LSGHIPQYLENLSFLSFLNLSYNHFEG 145
                  SG           L  L+LS+N    
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 6/114 (5%)

Query: 54  EVGNLKHLVSLDISSNMFSGEIPTTLGGCT--SLEHLSMQDNSFTGSIPSTLS----SLK 107
            V  +  L  L + +   +G  P  L   T   L  L++++ S+                
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 108 SITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISL 161
            +  L +++ +      + +     LS L+LS N   G+  + +     K  +L
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 59.6 bits (145), Expect = 7e-11
 Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 7/129 (5%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT-TLGGCTSLEHLSMQDNSFTGS 98
           L + +  L+   P      + L  L +  N     I    L   + L  L +  N     
Sbjct: 177 LRISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMI 232

Query: 99  IPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKG 158
              +LS L ++ EL L  N LS  +P  L +L  L  + L  N+   KV +        G
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFG 290

Query: 159 ISLVGNENL 167
           +       +
Sbjct: 291 VKRAYYNGI 299

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 18/132 (13%), Positives = 38/132 (28%), Gaps = 14/132 (10%)

Query: 20  NKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHLVSLDISSNMFSGEIPTT 78
           NK+   +  + L   ++   L L  N +           L  L  L + +N  S  +P  
Sbjct: 203 NKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAG 259

Query: 79  LGGCTSLEHLSMQDNSFTGSIPST-------LSSLKSITELDLSRNNLS-GHIPQYL-EN 129
           L     L+ + +  N+ T  +                   + L  N +    +       
Sbjct: 260 LPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318

Query: 130 LSFLSFLNLSYN 141
           ++    +     
Sbjct: 319 VTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 6/106 (5%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           L L +N +S         L+ L  L IS N    EIP  L   +SL  L + DN      
Sbjct: 83  LVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVP 139

Query: 100 PSTLSSLKSITELDLSRNNLSGHI--PQYLENLSFLSFLNLSYNHF 143
               S L+++  +++  N L      P   + L  L++L +S    
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKL 184

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 59  KHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNN 118
                LD+ +N  S        G   L  L + +N  +       S L+ + +L +S+N+
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 119 LSGHIPQYLENLSFLSFLNLSYNH 142
           L   IP  L   S L  L +  N 
Sbjct: 114 LV-EIPPNL--PSSLVELRIHDNR 134

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.0 bits (140), Expect = 4e-10
 Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 8/141 (5%)

Query: 40  LDLFDNLLSGHFPAEV-GNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGS 98
           +DL  N L           ++ L  L IS+N     +        +L+ L +  N     
Sbjct: 259 VDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-H 315

Query: 99  IPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKG 158
           +         +  L L  N++   +   L     L  L LS+N ++    + A+F +   
Sbjct: 316 VERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDC-NSLRALFRNVAR 371

Query: 159 ISLVGNENLCGGSRKSKFSIL 179
            ++   +  C    + +  + 
Sbjct: 372 PAVDDADQHCKIDYQLEHGLC 392

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.9 bits (137), Expect = 8e-10
 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 6/105 (5%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           LD   N ++      V     L  L +  N  + +    L     L  + +  N     +
Sbjct: 216 LDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIM 270

Query: 100 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 144
                 ++ +  L +S N L   +  Y + +  L  L+LS+NH  
Sbjct: 271 YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 6/141 (4%)

Query: 5   SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHLVS 63
            L + + + LL     ++   +             L +  N +  + P  V  N+  L  
Sbjct: 70  LLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 127

Query: 64  LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 123
           L +  N  S            L  LSM +N+       T  +  S+  L LS N L+ H+
Sbjct: 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HV 186

Query: 124 PQYLENLSFLSFLNLSYNHFE 144
              L  +  L   N+SYN   
Sbjct: 187 D--LSLIPSLFHANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 1e-08
 Identities = 16/105 (15%), Positives = 34/105 (32%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           + +       +F  E   L +   +   ++         L     +E L++ D       
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 91

Query: 100 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 144
               +   +I +L +  N +    P   +N+  L+ L L  N   
Sbjct: 92  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 5e-08
 Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 14/140 (10%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
             +     +L  L    N+L+  V   L+  +      ++  NLLS      +     + 
Sbjct: 164 DDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFH---ANVSYNLLS-----TLAIPIAVE 214

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
            LD S N  +  +   +     L  L +Q N+ T    + L +   + E+DLS N L   
Sbjct: 215 ELDASHNSIN-VVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI 269

Query: 123 IPQYLENLSFLSFLNLSYNH 142
           +      +  L  L +S N 
Sbjct: 270 MYHPFVKMQRLERLYISNNR 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 5/138 (3%)

Query: 11  NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHLVSLDISSN 69
           +L  L    N LS  +     + ++    L+L  N         +  +L  L  L + + 
Sbjct: 101 SLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159

Query: 70  MFSGEIPT-TLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYL- 127
               +I      G T LE L +  +      P +L S+++++ L L        + +   
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFV 218

Query: 128 ENLSFLSFLNLSYNHFEG 145
           +  S +  L L     + 
Sbjct: 219 DVTSSVECLELRDTDLDT 236

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.7 bits (132), Expect = 4e-09
 Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 5/145 (3%)

Query: 2   RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKH 60
               L  C NL  L    N ++ T+       +     LDL  N LS +  +     L  
Sbjct: 68  SNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSS 125

Query: 61  LVSLDISSNMFSGEIPTTL-GGCTSLEHLSMQDNSFTGSIPS-TLSSLKSITELDLSRNN 118
           L  L++  N +     T+L    T L+ L + +      I     + L  + EL++  ++
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185

Query: 119 LSGHIPQYLENLSFLSFLNLSYNHF 143
           L  + P+ L+++  +S L L     
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQH 210

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.9 bits (122), Expect = 8e-08
 Identities = 20/134 (14%), Positives = 40/134 (29%), Gaps = 3/134 (2%)

Query: 11  NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHLVSLDISSN 69
           +L  L    N         L   +T+  +L + +         +    L  L  L+I ++
Sbjct: 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184

Query: 70  MFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPS-TLSSLKSITELDLSRNNLSGHIPQYLE 128
                 P +L    ++ HL +        +    +    S+  L+L   +L       L 
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

Query: 129 NLSFLSFLNLSYNH 142
                S +      
Sbjct: 244 TGETNSLIKKFTFR 257

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 12/126 (9%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV------- 55
           P SL + QN+  L     +    +    + + +    L+L D  L     +E+       
Sbjct: 191 PKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249

Query: 56  -GNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIP-STLSSLKSITELD 113
                   ++ I+      ++   L   + L  L    N    S+P      L S+ ++ 
Sbjct: 250 LIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIW 307

Query: 114 LSRNNL 119
           L  N  
Sbjct: 308 LHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 61  LVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPS-TLSSLKSITELDLSRNNL 119
           + SLD+S+N  +    + L  C +L+ L +  N    +I   + SSL S+  LDLS N L
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL 112

Query: 120 SGHIPQYLENLSFLSFLNLSYNHFE 144
           S     + + LS L+FLNL  N ++
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYK 137

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 14/148 (9%)

Query: 6   LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHLVSL 64
                 L  L    + L  +   + L+ I     L L                   +  L
Sbjct: 170 FAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECL 227

Query: 65  DISSNMFSG----EIPT----TLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR 116
           ++           E+ T    +L    +  ++ + D S    +   L+ +  + EL+ SR
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286

Query: 117 NNLSGHIPQY-LENLSFLSFLNLSYNHF 143
           N L   +P    + L+ L  + L  N +
Sbjct: 287 NQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
               SS   +  IP+ L    +++ L + +N  T    S L    ++  L L+ N ++  
Sbjct: 35  ICKGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91

Query: 123 IPQYLENLSFLSFLNLSYNH 142
                 +L  L  L+LSYN+
Sbjct: 92  EEDSFSSLGSLEHLDLSYNY 111

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.3 bits (133), Expect = 3e-09
 Identities = 36/173 (20%), Positives = 60/173 (34%), Gaps = 7/173 (4%)

Query: 18  CKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT 77
                   VP+ L +  T    L++  N +S  + +++ +L  L  L IS N       +
Sbjct: 7   RSKNGLIHVPKDLSQKTTI---LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS 63

Query: 78  TLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNL-SGHIPQYLENLSFLSFL 136
                  LE+L +  N     I        ++  LDLS N   +  I +   N+S L FL
Sbjct: 64  VFKFNQELEYLDLSHNKLV-KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120

Query: 137 NLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGGSRKSKFSILIKVVIQVIVL 189
            LS  H E    +     +   + LV  E                  + ++  
Sbjct: 121 GLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 25/145 (17%), Positives = 53/145 (36%), Gaps = 6/145 (4%)

Query: 8   NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDIS 67
           + + L +     +         +  I +   + +   +            +   + LD S
Sbjct: 274 SLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332

Query: 68  SNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPST---LSSLKSITELDLSRNNLSGHIP 124
           +N+ +  +    G  T LE L +Q N     +       + +KS+ +LD+S+N++S    
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391

Query: 125 Q-YLENLSFLSFLNLSYNHFEGKVP 148
           +        L  LN+S N     + 
Sbjct: 392 KGDCSWTKSLLSLNMSSNILTDTIF 416

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 5e-07
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 40  LDLFDNLLSGHFPAEV-GNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGS 98
           LD+  N +S           K L+SL++SSN+ +  I   L     ++ L +  N    S
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-S 435

Query: 99  IPSTLSSLKSITELDLSRNNLSGHIPQY-LENLSFLSFLNLSYNHF 143
           IP  +  L+++ EL+++ N L   +P    + L+ L  + L  N +
Sbjct: 436 IPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 24/151 (15%), Positives = 51/151 (33%), Gaps = 7/151 (4%)

Query: 1   NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVL-------LDLFDNLLSGHFPA 53
           +    L     L  LT    + +     ++L+++  + +       + L   L    F  
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270

Query: 54  EVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELD 113
              +LK L    + S++F           +++   +   +          S +     LD
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330

Query: 114 LSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 144
            S N L+  + +   +L+ L  L L  N  +
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.1 bits (132), Expect = 4e-09
 Identities = 45/175 (25%), Positives = 66/175 (37%), Gaps = 14/175 (8%)

Query: 6   LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLD 65
           +    N+  L    NKL+   P   L+ +     L L +N +       + +LK L SL 
Sbjct: 61  IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGW---LFLDENKIKDLSS--LKDLKKLKSLS 115

Query: 66  ISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ 125
           +  N  S +I   L     LE L + +N  T    + LS L  +  L L  N +S  I  
Sbjct: 116 LEHNGIS-DI-NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIVP 170

Query: 126 YLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGGSRKSKFSILI 180
            L  L+ L  L LS NH      + A+        L      C     +  S L+
Sbjct: 171 -LAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLV 221

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.4 bits (125), Expect = 3e-08
 Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 8/103 (7%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
                  +   FP +       +  ++     +  +        S++ +   ++    S+
Sbjct: 4   TITVSTPIKQIFPDD--AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV 58

Query: 100 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH 142
              +  L ++T+L L+ N L+  I   L NL  L +L L  N 
Sbjct: 59  -QGIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENK 98

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.8 bits (131), Expect = 5e-09
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 7/134 (5%)

Query: 34  ITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDN 93
             R+  LD   +               +  L ++    +  +   L     + HL +  N
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHN 473

Query: 94  SFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIF 153
               ++P  L++L+ +  L  S N L  ++   + NL  L  L L  N  +    I+ + 
Sbjct: 474 RLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLV 530

Query: 154 NST--KGISLVGNE 165
           +      ++L GN 
Sbjct: 531 SCPRLVLLNLQGNS 544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.8 bits (126), Expect = 2e-08
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTG-S 98
           LDL  N L    P  +  L+ L  L  S N     +   +     L+ L + +N     +
Sbjct: 468 LDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSA 524

Query: 99  IPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFL 133
               L S   +  L+L  N+L        E L+ +
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.6 bits (129), Expect = 7e-09
 Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 8/136 (5%)

Query: 9   CQNLILLTT--CKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDI 66
              +       C  +    +P  L +  T    L L +NLL     A +     L  L++
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLPKDTTI---LHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 67  SSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQY 126
                + ++    G    L  L +  N    S+P    +L ++T LD+S N L+      
Sbjct: 63  DRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 127 LENLSFLSFLNLSYNH 142
           L  L  L  L L  N 
Sbjct: 120 LRGLGELQELYLKGNE 135

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           LDL  N L    P     L  L  LD+S N  +      L G   L+ L ++ N    ++
Sbjct: 82  LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 139

Query: 100 PS-TLSSLKSITELDLSRNNLSGHIPQYL-ENLSFLSFLNLSYN 141
           P   L+    + +L L+ NNL+  +P  L   L  L  L L  N
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQEN 182

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 36/155 (23%), Positives = 58/155 (37%), Gaps = 14/155 (9%)

Query: 20  NKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHLVSLDISSNMFSGEIPTT 78
           N LS          +T    L L  N L+    +E    + +L  LD+SSN         
Sbjct: 49  NNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFL 107

Query: 79  LGGCTSLEHLSMQDNSFTGSIPS-TLSSLKSITELDLSRNNLSGHIP----QYLENLSFL 133
                +LE L + +N     +       +  + +L LS+N +S   P    +    L  L
Sbjct: 108 FSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKL 165

Query: 134 SFLNLSYNHFEGKVPIEAIFNSTK----GISLVGN 164
             L+LS N  + K+P+  +         G+ L  N
Sbjct: 166 MLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 28/137 (20%), Positives = 45/137 (32%), Gaps = 8/137 (5%)

Query: 11  NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHLVSLDISSN 69
           NL  L    N L+  +  +    +     LDL  N L       +  +L+ L  L + +N
Sbjct: 65  NLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNN 122

Query: 70  MFSGEIPTTLGGCTSLEHLSMQDNSFTGSIP----STLSSLKSITELDLSRNNLSGHIPQ 125
                          L+ L +  N  +   P       + L  +  LDLS N L      
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181

Query: 126 YLENLSFLSFLNLSYNH 142
            L+ L       L  ++
Sbjct: 182 DLQKLPAWVKNGLYLHN 198

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT-TLGGCTSLEHLSMQDNSFTGS 98
           +DL  N ++         L+ L  L +        I   T  G +SL  L +  N F   
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-Q 93

Query: 99  IPS-TLSSLKSITELDLSRNNL-SGHIPQ-YLENLSFLSFLNLSYNH 142
           + +   + L ++  L L++ NL    +   + + L+ L  L L  N+
Sbjct: 94  LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 9/147 (6%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHL 61
             S    Q+L  L   +      +     R ++  ++L L  N             L +L
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANL 105

Query: 62  VSLDISSNMFSGEI--PTTLGGCTSLEHLSMQDNSFTGSIPSTL-SSLKSITELDLSRNN 118
             L ++     G +         TSLE L ++DN+     P++   +++    LDL+ N 
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165

Query: 119 LSGHIPQ---YLENLSFLSFLNLSYNH 142
           +   I +           + L LS   
Sbjct: 166 VK-SICEEDLLNFQGKHFTLLRLSSIT 191

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 29/153 (18%), Positives = 53/153 (34%), Gaps = 18/153 (11%)

Query: 8   NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGN---------- 57
              ++  L    N    ++ ++    I  + +  L  +       +              
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 58  ----LKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPS-TLSSLKSITEL 112
                  + + D+S +     + +     T LE L++  N     I       L  + +L
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKL 328

Query: 113 DLSRNNLSGHIPQYL-ENLSFLSFLNLSYNHFE 144
           +LS+N L   I   + ENL  L  L+LSYNH  
Sbjct: 329 NLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 5/126 (3%)

Query: 20  NKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHLVSLDISSNMFSGEIPTT 78
           +K+   + + +    T    L L  N ++          L HL+ L++S N         
Sbjct: 285 SKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRM 342

Query: 79  LGGCTSLEHLSMQDNSFTGSIPS-TLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLN 137
                 LE L +  N    ++   +   L ++ EL L  N L        + L+ L  + 
Sbjct: 343 FENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW 401

Query: 138 LSYNHF 143
           L  N +
Sbjct: 402 LHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 60  HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPS-TLSSLKSITELDLSRNN 118
           H+  +D+S N  +    T+      L+ L ++  +    I + T   L S+  L L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 119 LSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIF 153
                      L+ L  L L+  + +G V     F
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF 125

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 83  TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYL-ENLSFLSFLNLSYN 141
             + ++ +  NS      ++ S L+ +  L + +      I       LS L  L L YN
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 142 HFE 144
            F 
Sbjct: 90  QFL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 8e-08
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 4/103 (3%)

Query: 42  LFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT-TLGGCTSLEHLSMQDNSFTGSIP 100
             D  L       +   ++L  L I +      +    L G   L +L++  +      P
Sbjct: 16  TRDGALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73

Query: 101 STLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 143
                   ++ L+LS N L     + ++ LS L  L LS N  
Sbjct: 74  DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 1/48 (2%)

Query: 98  SIPSTLSSLKSITELDLSRNNLSGHIPQY-LENLSFLSFLNLSYNHFE 144
                L   +++TEL +       H+    L  L  L  L +  +   
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 11/136 (8%)

Query: 6   LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLD 65
                N I +   K+ ++ TV +  L  IT    L  F   ++      V  L +L+ L+
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLDGITT---LSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 66  ISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ 125
           +  N  +   P  L   T +  L +  N       S ++ L+SI  LDL+   ++     
Sbjct: 70  LKDNQITDLAP--LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITD--VT 123

Query: 126 YLENLSFLSFLNLSYN 141
            L  LS L  L L  N
Sbjct: 124 PLAGLSNLQVLYLDLN 139

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 8/111 (7%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           +    + ++        +L  + +L       +  I   +    +L  L ++DN  T  +
Sbjct: 24  IAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQIT-DL 78

Query: 100 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE 150
              L +L  ITEL+LS N L       +  L  +  L+L+        P+ 
Sbjct: 79  AP-LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTPLA 126

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 12/152 (7%)

Query: 4   PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVS 63
             L    NL +L    N+++   P   L  +     L + +  +S   P  + NL  L +
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQY---LSIGNAQVSDLTP--LANLSKLTT 177

Query: 64  LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 123
           L    N  S   P  L    +L  + +++N  +   P  L++  ++  + L+   ++   
Sbjct: 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233

Query: 124 PQYLENLSFLSFLNLSYNHFEGKVPIEAIFNS 155
             Y  N   L   N+        +    I ++
Sbjct: 234 VFYNNN---LVVPNVVKGPSGAPIAPATISDN 262

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT-TLGGCTSLEHLSMQDNSFTGS 98
           L L +  L         NL ++  + +S ++   ++ + +    + + H+ +++      
Sbjct: 36  LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95

Query: 99  IPS-TLSSLKSITELDLSRNNLSGHIPQY--LENLSFLSFLNLSYN 141
           I    L  L  +  L +    L    P    + +      L ++ N
Sbjct: 96  IDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDN 140

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 8/137 (5%)

Query: 11  NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAE--VGNLKHLVSLDISS 68
            +  +     +    +    L+ +     L +F+  L   FP    V +      L+I+ 
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITD 139

Query: 69  NMFSGEIPTTL--GGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQY 126
           N +   IP     G C     L + +N FT S+     +   +  + L++N     I + 
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198

Query: 127 -LENL-SFLSFLNLSYN 141
               + S  S L++S  
Sbjct: 199 AFGGVYSGPSLLDVSQT 215

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 7/136 (5%)

Query: 8   NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV--GNLKHLVSLD 65
               L  L      L        +       +L++ DN      P     G     ++L 
Sbjct: 103 ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162

Query: 66  ISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPS-TLSSLKS-ITELDLSRNNLSGHI 123
           + +N F+  +       T L+ + +  N +   I       + S  + LD+S+ +++  +
Sbjct: 163 LYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-AL 220

Query: 124 PQY-LENLSFLSFLNL 138
           P   LE+L  L   N 
Sbjct: 221 PSKGLEHLKELIARNT 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 29/137 (21%), Positives = 43/137 (31%), Gaps = 5/137 (3%)

Query: 8   NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV--GNLKHLVSLD 65
           N  NL  L      +   +P        + VLLD+ DN+           G     V L 
Sbjct: 102 NLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160

Query: 66  ISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ 125
           ++ N       +   G    E     +N+                 LD+SR  +   +P 
Sbjct: 161 LNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS 219

Query: 126 Y-LENLSFLSFLNLSYN 141
           Y LENL  L   +    
Sbjct: 220 YGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 9/142 (6%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
              + +C N +    C+      +P  L R       L      L             L 
Sbjct: 3   HHRICHCSNRVF--LCQESKVTEIPSDLPRNAIE---LRFVLTKLRVIQKGAFSGFGDLE 57

Query: 63  SLDISSNMFSGEIPT-TLGGCTSLEHLSMQDNSFTGSIPS-TLSSLKSITELDLSRNNLS 120
            ++IS N     I          L  + ++  +    I      +L ++  L +S   + 
Sbjct: 58  KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117

Query: 121 GHIPQYL-ENLSFLSFLNLSYN 141
            H+P     +      L++  N
Sbjct: 118 -HLPDVHKIHSLQKVLLDIQDN 138

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 3/111 (2%)

Query: 59  KHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPS-TLSSLKSITELDLSRN 117
           ++ + L                G   LE + +  N     I +   S+L  + E+ + + 
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 118 NLSGHIP-QYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENL 167
           N   +I  +  +NL  L +L +S    +  +P     +S + + L   +N+
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNI 139

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 57  NLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR 116
           ++K LV LD S +   G++         LE LS  +   T SI + L  L  + +L+LS 
Sbjct: 18  DVKELV-LDNSRSN-EGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSD 73

Query: 117 NNLSGHIPQYLENLSFLSFLNLSYNHFE 144
           N +SG +    E    L+ LNLS N  +
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 27/167 (16%), Positives = 46/167 (27%), Gaps = 29/167 (17%)

Query: 5   SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSV---LLDLFDN-------------LLS 48
           +L  C  L  +    N    T    L+  +++      L L +N             L  
Sbjct: 89  ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148

Query: 49  GHFPAEVGNLKHLVSLDISSNMFSGE----IPTTLGGCTSLEHLSMQDNSFT-----GSI 99
                +  N   L S+    N            T      L  + M  N          +
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208

Query: 100 PSTLSSLKSITELDLSRNNLSG----HIPQYLENLSFLSFLNLSYNH 142
              L+  + +  LDL  N  +      +   L++   L  L L+   
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 15/102 (14%)

Query: 57  NLKHLVSLDISSNMFSGE-----IPTTLGGCTSLEHLSMQDNSFTG----SIPSTLSSLK 107
           + + L ++ +  N    E     +   L  C  L+ L +QDN+FT     ++   L S  
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244

Query: 108 SITELDLSRNNLSG----HIPQYLENLSF--LSFLNLSYNHF 143
           ++ EL L+   LS      +      L    L  L L YN  
Sbjct: 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 20/153 (13%), Positives = 37/153 (24%), Gaps = 25/153 (16%)

Query: 40  LDLFDNLLSG----HFPAEVGNLKHLVSLDISSNMFSGE----IPTTLGGCTSLEHLSMQ 91
             L  + ++        A +     +  + +S N    E    +   +     LE     
Sbjct: 9   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 68

Query: 92  DNSF----------TGSIPSTLSSLKSITELDLSRNNLSG----HIPQYLENLSFLSFLN 137
           D                +   L     +  + LS N         +  +L   + L  L 
Sbjct: 69  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 128

Query: 138 LSYNHF--EGKVPI-EAIFNSTKGISLVGNENL 167
           L  N    +    I  A+              L
Sbjct: 129 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPL 161

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 15/100 (15%)

Query: 59  KHLVSLDISSNMFSGE----IPTTLGGCTSLEHLSMQDNSFTG----SIPSTLSSL--KS 108
           + L  LD+  N F+      +   L    +L  L + D   +     ++    S L    
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG 275

Query: 109 ITELDLSRNNLSG----HIPQYL-ENLSFLSFLNLSYNHF 143
           +  L L  N +       +   + E +  L FL L+ N F
Sbjct: 276 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 22/115 (19%), Positives = 33/115 (28%), Gaps = 27/115 (23%)

Query: 57  NLKHLVSLDISSNM---FSGEIPTT-------LGGCTSLEHLSMQDNSFTG----SIPST 102
           + K L   + S         EIP         L  C  L  + + DN+F       +   
Sbjct: 58  SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF 117

Query: 103 LSSLKSITELDLSRNNLS-------------GHIPQYLENLSFLSFLNLSYNHFE 144
           LS    +  L L  N L                + +  +N   L  +    N  E
Sbjct: 118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.2 bits (116), Expect = 3e-07
 Identities = 21/127 (16%), Positives = 48/127 (37%), Gaps = 19/127 (14%)

Query: 31  LRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTL-------GGCT 83
           L II+  +   + +++L    P    NL+ L  L +    +  +    +           
Sbjct: 198 LEIISGGLPDSVVEDILGSDLP----NLEKL-VLYVGVEDYGFDGDMNVFRPLFSKDRFP 252

Query: 84  SLEHLSMQDNSFTGSIPSTLSS---LKSITELDLSRNNLSG----HIPQYLENLSFLSFL 136
           +L+ L + D      +         L  +  +D+S   L+      +  +++ +  L F+
Sbjct: 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312

Query: 137 NLSYNHF 143
           N+ YN+ 
Sbjct: 313 NMKYNYL 319

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 18/152 (11%)

Query: 10  QNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLS----GHFPAEVGNLKHLVSLD 65
            ++  L     +LS     +LL ++ +  ++ L D  L+        + +     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 66  ISSNMFSGEIPTTLGGC-----TSLEHLSMQDNSFT----GSIPSTLSSLKSITELDLSR 116
           + SN         +          ++ LS+Q+   T    G + STL +L ++ EL LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 117 NNLSGHIPQYL-----ENLSFLSFLNLSYNHF 143
           N L     Q L     +    L  L L Y   
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 22/160 (13%)

Query: 6   LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVL----LDLFDNLLS----GHFPAEVGN 57
           L    +   LT   N ++    R L + +  S      L L    ++          V +
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225

Query: 58  LKHLVSLDISSNMFSGE-----IPTTLGGCTSLEHLSMQDNSFT----GSIPSTLSSLKS 108
              L  L + SN           P  L   + L  L + +   T    G +   L + +S
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285

Query: 109 ITELDLSRNNLSGHIPQYL-----ENLSFLSFLNLSYNHF 143
           + EL L+ N L     + L     E    L  L +    F
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 22/160 (13%)

Query: 6   LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVL----LDLFDNLLS----GHFPAEVGN 57
           L     L  L    N+L       +L+ +         L L +  L+    G   + +  
Sbjct: 52  LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT 111

Query: 58  LKHLVSLDISSNMFSGE-----IPTTLGGCTSLEHLSMQDNSFT----GSIPSTLSSLKS 108
           L  L  L +S N+             L     LE L ++  S +      + S L +   
Sbjct: 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD 171

Query: 109 ITELDLSRNNLSG----HIPQYLE-NLSFLSFLNLSYNHF 143
             EL +S N+++      + Q L+ +   L  L L     
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.9 bits (114), Expect = 8e-07
 Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 9/138 (6%)

Query: 10  QNLILLTTCKNKLSGTVPRQ--LLRIITRSVLLDLFDNLL-SGHFPAEVGNLKHLVSLDI 66
           + L  L   +N L     +   + + ++    LD+  N L S  +       + ++ L++
Sbjct: 377 KRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435

Query: 67  SSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ- 125
           SSNM +G +   L     ++ L + +N    SIP  ++ L+++ EL+++ N L   +P  
Sbjct: 436 SSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDG 491

Query: 126 YLENLSFLSFLNLSYNHF 143
             + L+ L ++ L  N +
Sbjct: 492 VFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 7/115 (6%)

Query: 6   LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDN-LLSGHFPAEVGNLKHLVSL 64
             N  +L  L    N L+     +        ++L+L  N L    F      +K L   
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVL--- 455

Query: 65  DISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIP-STLSSLKSITELDLSRNN 118
           D+ +N     IP  +    +L+ L++  N    S+P      L S+  + L  N 
Sbjct: 456 DLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
           +L +S N  S      +   + L  L +  N             + +  LD+S N L  +
Sbjct: 56  ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-N 114

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNS 155
           I      ++ L  L+LS+N F+  +P+   F +
Sbjct: 115 IS--CCPMASLRHLDLSFNDFD-VLPVCKEFGN 144

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 11/137 (8%)

Query: 6   LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLD 65
                  I     K  ++  V +  L  I +   +   ++ +       +  L ++  L 
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQNELNSIDQ---IIANNSDIKSVQG--IQYLPNVTKLF 74

Query: 66  ISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ 125
           ++ N  +   P  L    +L  L + +N     + S+L  LK +  L L  N +S     
Sbjct: 75  LNGNKLTDIKP--LANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS--DIN 128

Query: 126 YLENLSFLSFLNLSYNH 142
            L +L  L  L L  N 
Sbjct: 129 GLVHLPQLESLYLGNNK 145

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 12/150 (8%)

Query: 5   SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSL 64
           SL + + L  L+   N +S       L  +     L L +N ++      +  L  L +L
Sbjct: 107 SLKDLKKLKSLSLEHNGISDINGLVHLPQLES---LYLGNNKITD--ITVLSRLTKLDTL 161

Query: 65  DISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP 124
            +  N  S  +P  L G T L++L +  N  +  +   L+ LK++  L+L          
Sbjct: 162 SLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPI 217

Query: 125 QYLENLSFLSFLNLSYNHFEGKVPIEAIFN 154
            +  NL   + +  +       V  E I +
Sbjct: 218 NHQSNLVVPNTVKNTDGSL---VTPEIISD 244

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 3/117 (2%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           LDL  N L         +   L  LD+S               + L  L +  N    S+
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SL 91

Query: 100 PS-TLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNS 155
                S L S+ +L     NL+      + +L  L  LN+++N  +    +   F++
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSN 147

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 34/166 (20%), Positives = 57/166 (34%), Gaps = 34/166 (20%)

Query: 5   SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSL 64
           SL +   LIL     N +  ++       ++    L   +  L+      +G+LK L  L
Sbjct: 74  SLSHLSTLIL---TGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 65  DISSN-MFSGEIPTTLGGCTSLEHLSMQDNSFTGSIP----STLSSLKSI---------- 109
           +++ N + S ++P      T+LEHL +  N    SI       L  +  +          
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 110 --------------TELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 141
                          EL L  N L        + L+ L  + L  N
Sbjct: 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 4/110 (3%)

Query: 35  TRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNS 94
           + S  +D+   +           ++ LV LD   +   G+I        +LE LS+ +  
Sbjct: 3   SGSSGMDMKRRIHLELRNRTPAAVRELV-LDNCKSN-DGKIEGLTAEFVNLEFLSLINVG 60

Query: 95  FTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 144
              S+ S L  L  + +L+LS N + G +    E L  L+ LNLS N  +
Sbjct: 61  LI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 56  GNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLS 115
               +L  L + +      + + L     L+ L + +N   G +      L ++T L+LS
Sbjct: 46  AEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103

Query: 116 RNNLS--GHIPQYLENLSFLSFLNLSYN 141
            N L     + + L+ L  L  L+L   
Sbjct: 104 GNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 9/117 (7%)

Query: 6   LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLD 65
                NL  L+     L        L  + +   L+L +N + G        L +L  L+
Sbjct: 45  TAEFVNLEFLSLINVGLISVSNLPKLPKLKK---LELSENRIFGGLDMLAEKLPNLTHLN 101

Query: 66  ISSNMFS--GEIPTTLGGCTSLEHLSMQDNSFTGSI---PSTLSSLKSITELDLSRN 117
           +S N       +   L     L+ L + +   T       S    L  +T LD    
Sbjct: 102 LSGNKLKDISTL-EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 15/140 (10%)

Query: 5   SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSL 64
            + +   L  L    NK    +       +T    LD   N ++     +V   K L  L
Sbjct: 143 DVSHNTQLTELDCHLNKKITKLDVTPQTQLTT---LDCSFNKITE---LDVSQNKLLNRL 196

Query: 65  DISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP 124
           +  +N  + ++   L     L  L    N  T  I   ++ L  +T  D S N L+  + 
Sbjct: 197 NCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELD 249

Query: 125 QYLENLSFLSFLNLSYNHFE 144
             +  LS L+ L+       
Sbjct: 250 --VSTLSKLTTLHCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 31/146 (21%), Positives = 53/146 (36%), Gaps = 19/146 (13%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
              +     L  L    NK++     Q   +      L+   N ++     ++     L 
Sbjct: 163 KLDVTPQTQLTTLDCSFNKITELDVSQNKLLNR----LNCDTNNITK---LDLNQNIQLT 215

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKS-------ITELDLS 115
            LD SSN  + EI   +   T L +     N  T    STLS L +       + E+DL+
Sbjct: 216 FLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLT 272

Query: 116 RNNLSGHIPQYLENLSFLSFLNLSYN 141
            N    +     E    +  L++++N
Sbjct: 273 HNTQLIYF--QAEGCRKIKELDVTHN 296

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 14/130 (10%)

Query: 13  ILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFS 72
            +    + + + T+  + L  +T    LD  ++ ++      +  L  L  L  +SN  +
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTS---LDCHNSSITD--MTGIEKLTGLTKLICTSNNIT 77

Query: 73  GEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF 132
             +   L   T+L +L+   N  T ++   ++ L  +T L+   N L+  +   +     
Sbjct: 78  -TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLD--VSQNPL 128

Query: 133 LSFLNLSYNH 142
           L++LN + N 
Sbjct: 129 LTYLNCARNT 138

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 15/140 (10%)

Query: 5   SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSL 64
            +     L       N L+  +    L  +T    L      L      ++ +   L+  
Sbjct: 228 DVTPLTQLTYFDCSVNPLT-ELDVSTLSKLTT---LHCIQTDLLE---IDLTHNTQLIYF 280

Query: 65  DISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP 124
                    E+   +   T L  L  Q    T  +   LS    +  L L+   L+  + 
Sbjct: 281 QAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD 334

Query: 125 QYLENLSFLSFLNLSYNHFE 144
             + + + L  L+    H +
Sbjct: 335 --VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 55  VGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDL 114
              L  L SLD  ++  +    T +   T L  L    N+ T ++   LS   ++T L  
Sbjct: 38  EEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLAC 92

Query: 115 SRNNLSGHIPQYLENLSFLSFLNLSYNHFE 144
             N L+ ++   +  L+ L++LN   N   
Sbjct: 93  DSNKLT-NLD--VTPLTKLTYLNCDTNKLT 119

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 12/110 (10%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           L    N ++     ++    +L  L   SN  +  +   +   T L +L+   N  T   
Sbjct: 69  LICTSNNITT---LDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT--- 119

Query: 100 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI 149
              +S    +T L+ +RN L+  I   + + + L+ L+   N    K+ +
Sbjct: 120 KLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLDV 166

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 11/136 (8%)

Query: 5   SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSL 64
            L +   LI       +    +    +   T+  LLD     ++     ++     LV L
Sbjct: 270 DLTHNTQLIYFQAEGCRKIKELD---VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYL 323

Query: 65  DISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP 124
            +++   + E+   +   T L+ LS  +        S +  + ++     +         
Sbjct: 324 YLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPK 378

Query: 125 QYLENLSFLSFLNLSY 140
           + L N S    ++   
Sbjct: 379 ETLTNNSLTIAVSPDL 394

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 3/88 (3%)

Query: 57  NLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR 116
           N      LD+        I          + +   DN     +      L+ +  L ++ 
Sbjct: 17  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNN 73

Query: 117 NNLSGHIPQYLENLSFLSFLNLSYNHFE 144
           N +        + L  L+ L L+ N   
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLV 101

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           LDL  N LS         L  L  L ++ N              +LE L + DN    ++
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-AL 100

Query: 100 PS-TLSSLKSITELDLSRNNLSGHIPQYL-ENLSFLSFLNLSYN 141
           P      L ++ EL L RN L   +P  + ++L+ L++L+L YN
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYN 143

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTL-SSLKSITELDLSRNNLSG 121
            LD+ SN  S          T L  L + DN    ++P+ +   LK++  L ++ N L  
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99

Query: 122 HIPQYLENLSFLSFLNLSYNHFE 144
                 + L  L+ L L  N  +
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLK 122

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 74  EIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFL 133
           ++  TL    + +HL++  N+    I S+LS ++++  L L RN +   I         L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 134 SFLNLSYNHFE 144
             L +SYN   
Sbjct: 96  EELWISYNQIA 106

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 56  GNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLS 115
             +++L  L +  N+   +I        +LE L +  N    S+ S +  L ++  L +S
Sbjct: 67  SGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMS 123

Query: 116 RNNLS--GHIPQYLENLSFLSFLNLSYN 141
            N ++  G I   L  L  L  L L+ N
Sbjct: 124 NNKITNWGEI-DKLAALDKLEDLLLAGN 150

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 4/107 (3%)

Query: 40  LDLFDNLLSGHFPAEV-GNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGS 98
           +DL +N +S     +    L+ L SL +  N  +    +   G  SL+ L +  N     
Sbjct: 61  IDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-C 118

Query: 99  IPS-TLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 144
           +       L ++  L L  N L          L  +  ++L+ N F 
Sbjct: 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 2/80 (2%)

Query: 64  LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPS-TLSSLKSITELDLSRNNLSGH 122
           + +  N      P        L  + + +N  +  +       L+S+  L L  N ++  
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 123 IPQYLENLSFLSFLNLSYNH 142
                E L  L  L L+ N 
Sbjct: 96  PKSLFEGLFSLQLLLLNANK 115

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 2/103 (1%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           + L  N +    P      K L  +D+S+N  S   P    G  SL  L +  N  T  +
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95

Query: 100 PS-TLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 141
           P      L S+  L L+ N ++       ++L  L+ L+L  N
Sbjct: 96  PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 138

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 16/86 (18%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 57  NLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR 116
            L + V  ++     S     +    + +++ +  +++   S+ + +    ++ EL LS 
Sbjct: 17  GLANAVKQNLGKQ--SVTDLVSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSH 72

Query: 117 NNLSGHIPQYLENLSFLSFLNLSYNH 142
           N +S   P  L++L+ L  L+++ N 
Sbjct: 73  NQISDLSP--LKDLTKLEELSVNRNR 96

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 33/162 (20%), Positives = 56/162 (34%), Gaps = 13/162 (8%)

Query: 6   LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLD 65
           L +   L  L+  +N+L          +      L L +N L       + +LK+L  L 
Sbjct: 81  LKDLTKLEELSVNRNRLKNLNGIPSACLSR----LFLDNNELRD--TDSLIHLKNLEILS 134

Query: 66  ISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ 125
           I +N     I   LG  + LE L +  N  T +    L+ LK +  +DL+         +
Sbjct: 135 IRNNKLK-SIVM-LGFLSKLEVLDLHGNEIT-NT-GGLTRLKKVNWIDLTGQKCV---NE 187

Query: 126 YLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENL 167
            ++    L   N   +     +    I N    +       L
Sbjct: 188 PVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWEL 229

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 38.5 bits (90), Expect = 9e-04
 Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 13/104 (12%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
            +L    ++         L  + + +  ++     +   +   T+L+ L +  N  +  +
Sbjct: 24  QNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSHNQIS-DL 78

Query: 100 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLS--FLNLSYN 141
            S L  L  + EL ++RN L       L  +       L L  N
Sbjct: 79  -SPLKDLTKLEELSVNRNRLKN-----LNGIPSACLSRLFLDNN 116

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 5/105 (4%)

Query: 40  LDLFDNLLSGHFP-AEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGS 98
           L L +N  +          L  L  ++ S+N  +        G + +  + +  N    +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 99  IPS-TLSSLKSITELDLSRNNLSGHIPQYL-ENLSFLSFLNLSYN 141
           +       L+S+  L L  N ++  +       LS +  L+L  N
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDN 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.93
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.91
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.91
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.9
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.89
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.89
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.89
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.87
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.85
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.85
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.85
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.85
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.85
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.85
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.85
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.84
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.84
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.84
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.84
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.84
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.84
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.84
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.83
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.83
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.83
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.82
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.82
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.82
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.82
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.81
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.81
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.81
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.81
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.8
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.8
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.79
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.79
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.79
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.76
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.75
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.75
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.74
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.73
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.71
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.71
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.7
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.7
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.69
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.69
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.69
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.68
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.68
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.67
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.66
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.66
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.65
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.65
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.64
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.64
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.62
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.6
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.57
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.57
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.57
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.56
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.51
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.51
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.42
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.38
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.28
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.2
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.19
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.17
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.01
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.94
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.88
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.84
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.8
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.79
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.75
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.71
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.61
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.55
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.51
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.49
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.42
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.36
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.34
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.33
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.12
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.65
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.64
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	97.24
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.13
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	96.77
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	96.41
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	95.23
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	86.96

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=1.3e-25  Score=178.11  Aligned_cols=168  Identities=23%  Similarity=0.210  Sum_probs=151.6

Q ss_pred             CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCC
Q 048080            4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCT   83 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~   83 (223)
                      .+|+++++|++|++++|.+. .+|...|...+.|++|++++|.+....+..|..+++|++|++++|.+++..+..|..++
T Consensus        55 ~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  133 (270)
T 2o6q_A           55 KAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT  133 (270)
T ss_dssp             TSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             HHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc
Confidence            47999999999999999998 89988888888999999999999988888899999999999999999988888899999


Q ss_pred             CCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc-hhhhcCCcceeec
Q 048080           84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI-EAIFNSTKGISLV  162 (223)
Q Consensus        84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~l~~l~~~  162 (223)
                      +|++|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+. ......++.+++.
T Consensus       134 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  213 (270)
T 2o6q_A          134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ  213 (270)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence            999999999999977777799999999999999999988888899999999999999999865443 2446778899999


Q ss_pred             CCCCCCCCCC
Q 048080          163 GNENLCGGSR  172 (223)
Q Consensus       163 ~n~~~C~~~~  172 (223)
                      +|++.|+|..
T Consensus       214 ~N~~~c~c~~  223 (270)
T 2o6q_A          214 ENPWDCTCNG  223 (270)
T ss_dssp             SSCBCCSSSS
T ss_pred             CCCeeCCCcc
Confidence            9999999953

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=3.1e-26  Score=185.44  Aligned_cols=168  Identities=28%  Similarity=0.469  Sum_probs=123.9

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG   81 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   81 (223)
                      +|..|+++++|++|++++|++.+.+|..+....+.|++|++++|.+++..|..|..++ |++|++++|.+++..|..|..
T Consensus       141 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~  219 (313)
T 1ogq_A          141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS  219 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT
T ss_pred             CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc
Confidence            4555555555666666555555555555544443556666666666655565555554 666666666666666667777


Q ss_pred             CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceee
Q 048080           82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISL  161 (223)
Q Consensus        82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~  161 (223)
                      +++|+.|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|....+..++.+++
T Consensus       220 l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l  298 (313)
T 1ogq_A          220 DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY  298 (313)
T ss_dssp             TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGT
T ss_pred             CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHh
Confidence            77888888888887766555 77788899999999999988999999999999999999999998888777888899999


Q ss_pred             cCCCCCCCCC
Q 048080          162 VGNENLCGGS  171 (223)
Q Consensus       162 ~~n~~~C~~~  171 (223)
                      .+|++.|+.+
T Consensus       299 ~~N~~lc~~p  308 (313)
T 1ogq_A          299 ANNKCLCGSP  308 (313)
T ss_dssp             CSSSEEESTT
T ss_pred             cCCCCccCCC
Confidence            9999999854

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.93  E-value=4.6e-25  Score=173.12  Aligned_cols=167  Identities=21%  Similarity=0.233  Sum_probs=147.8

Q ss_pred             CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080            1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG   80 (223)
Q Consensus         1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   80 (223)
                      +||..+.  ++++.|++++|.+. .++...+...+.|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.
T Consensus        28 ~~p~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  104 (251)
T 3m19_A           28 SVPSGIP--ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD  104 (251)
T ss_dssp             SCCSCCC--TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             ccCCCCC--CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhc
Confidence            3676665  68999999999998 67766677788889999999999988888899999999999999999988888899


Q ss_pred             CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc-hhhhcCCcce
Q 048080           81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI-EAIFNSTKGI  159 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~l~~l  159 (223)
                      .+++|++|++++|++++..+..|..+++|++|+|++|.+++..+..|..+++|+.|++++|++.+..+. ......++.+
T Consensus       105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  184 (251)
T 3m19_A          105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI  184 (251)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence            999999999999999988777889999999999999999988777899999999999999999976553 3456788899


Q ss_pred             eecCCCCCCCC
Q 048080          160 SLVGNENLCGG  170 (223)
Q Consensus       160 ~~~~n~~~C~~  170 (223)
                      ++.+|++.|++
T Consensus       185 ~l~~N~~~c~~  195 (251)
T 3m19_A          185 TLFGNQFDCSR  195 (251)
T ss_dssp             ECCSCCBCTTS
T ss_pred             EeeCCceeCCc
Confidence            99999999983

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.93  E-value=1.3e-25  Score=173.02  Aligned_cols=153  Identities=22%  Similarity=0.244  Sum_probs=71.0

Q ss_pred             eeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccC
Q 048080           14 LLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDN   93 (223)
Q Consensus        14 ~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N   93 (223)
                      .++.++++++ .+|..+.   +.++.|++++|.+++..+..|..+++|++|++++|.++++.|+.|.++++|++|+|++|
T Consensus        15 ~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           15 IVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             EEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             EEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            3444444444 4444322   33344555555544444444444445555555555544444444444555555555555


Q ss_pred             cccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc-hhhhcCCcceeecCCCCCCCC
Q 048080           94 SFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI-EAIFNSTKGISLVGNENLCGG  170 (223)
Q Consensus        94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~l~~l~~~~n~~~C~~  170 (223)
                      +++...+..|..+++|++|+|++|.+++..|..|..+++|+.|++++|.+++..+. ......++.+++.+|++.|+|
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence            54433333444444555555555555444444444444555555555544433321 122334444445555554444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=9.7e-26  Score=202.45  Aligned_cols=168  Identities=35%  Similarity=0.570  Sum_probs=137.1

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCc----------------------------
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPA----------------------------   53 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~----------------------------   53 (223)
                      +|.+|+++++|++|++++|++.+.+|..+. ..+.|++|++++|.+.+.+|.                            
T Consensus       506 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  584 (768)
T 3rgz_A          506 IPKWIGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK  584 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCEEECCGGGG-GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred             CChHHhcCCCCCEEECCCCcccCcCCHHHc-CCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence            566666666777777777776666665543 345557777777766655443                            


Q ss_pred             ------------------------------------------CCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcc
Q 048080           54 ------------------------------------------EVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQ   91 (223)
Q Consensus        54 ------------------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~   91 (223)
                                                                .|..+++|+.|++++|.+++.+|..++.+++|+.|+|+
T Consensus       585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls  664 (768)
T 3rgz_A          585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG  664 (768)
T ss_dssp             TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECC
T ss_pred             ccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCc
Confidence                                                      23345678888888888888999999999999999999


Q ss_pred             cCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCCCCCCC
Q 048080           92 DNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG  170 (223)
Q Consensus        92 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~~~C~~  170 (223)
                      +|+++|.+|..++.+++|+.|||++|+++|.+|..+..++.|+.|++++|+++|.+|....+..+....+.||+..|+.
T Consensus       665 ~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred             CCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCC
Confidence            9999999999999999999999999999999999999999999999999999999998777778888889999999975

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=6.1e-25  Score=176.09  Aligned_cols=165  Identities=24%  Similarity=0.182  Sum_probs=138.0

Q ss_pred             CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCC
Q 048080            3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC   82 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l   82 (223)
                      |.+|.++++|++|++++|.+. .++..  ...+.|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+
T Consensus        48 ~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l  123 (290)
T 1p9a_G           48 LATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL  123 (290)
T ss_dssp             GGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC
T ss_pred             HHHhhcCCCCCEEECCCCccC-cccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCC
Confidence            456777778888888888877 55543  45667788888888888 667778899999999999999998888889999


Q ss_pred             CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeec
Q 048080           83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLV  162 (223)
Q Consensus        83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~  162 (223)
                      ++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|+++...+.......++.+++.
T Consensus       124 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~  203 (290)
T 1p9a_G          124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH  203 (290)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred             CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence            99999999999999888888899999999999999999777777888999999999999999544433445678899999


Q ss_pred             CCCCCCCCC
Q 048080          163 GNENLCGGS  171 (223)
Q Consensus       163 ~n~~~C~~~  171 (223)
                      +|||.|+|.
T Consensus       204 ~Np~~C~c~  212 (290)
T 1p9a_G          204 GNPWLCNCE  212 (290)
T ss_dssp             SCCBCCSGG
T ss_pred             CCCccCcCc
Confidence            999999983

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.93  E-value=3.9e-25  Score=170.38  Aligned_cols=150  Identities=18%  Similarity=0.181  Sum_probs=109.8

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG   81 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   81 (223)
                      ||..+.  ..+++|++++|.+.+..|...+...+.|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..
T Consensus        26 iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  103 (220)
T 2v70_A           26 IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG  103 (220)
T ss_dssp             CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT
T ss_pred             CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC
Confidence            555554  345777777777773334555666677777788777777777777777777888888877777776777777


Q ss_pred             CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhh
Q 048080           82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIF  153 (223)
Q Consensus        82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~  153 (223)
                      +++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++.|.++..+..
T Consensus       104 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~  175 (220)
T 2v70_A          104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLG  175 (220)
T ss_dssp             CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHH
T ss_pred             CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHH
Confidence            777888888888777777777777777788888877777777777777777777888888777777655443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=7.8e-25  Score=174.71  Aligned_cols=169  Identities=20%  Similarity=0.163  Sum_probs=135.1

Q ss_pred             CCCCCCCCCCCeeecccCc-cccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080            3 PPSLGNCQNLILLTTCKNK-LSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG   81 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~-i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   81 (223)
                      |.+|+++++|++|++++|. +. .++...+...+.|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..
T Consensus        73 ~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  151 (285)
T 1ozn_A           73 AAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD  151 (285)
T ss_dssp             TTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             HhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc
Confidence            5677777888888888876 65 665555666677788888888888777777888888888888888888777777888


Q ss_pred             CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc-hhhhcCCccee
Q 048080           82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI-EAIFNSTKGIS  160 (223)
Q Consensus        82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~l~~l~  160 (223)
                      +++|+.|++++|++++..+..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+. ......++.++
T Consensus       152 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  231 (285)
T 1ozn_A          152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR  231 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred             CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence            88888888888888877666788888899999999988888888888889999999999988864433 24467788899


Q ss_pred             ecCCCCCCCCCC
Q 048080          161 LVGNENLCGGSR  172 (223)
Q Consensus       161 ~~~n~~~C~~~~  172 (223)
                      +.+|++.|+|..
T Consensus       232 l~~N~~~c~~~~  243 (285)
T 1ozn_A          232 LNDNPWVCDCRA  243 (285)
T ss_dssp             CCSSCEECSGGG
T ss_pred             ccCCCccCCCCc
Confidence            999999998844

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.92  E-value=2.4e-24  Score=165.96  Aligned_cols=168  Identities=17%  Similarity=0.204  Sum_probs=146.4

Q ss_pred             CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080            1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG   80 (223)
Q Consensus         1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   80 (223)
                      +||..+.  ++|+.|++++|++. .++...+...+.|++|++++|.+++..|..|.++++|++|++++|.++.+.+..|.
T Consensus        25 ~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~  101 (220)
T 2v9t_B           25 EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE  101 (220)
T ss_dssp             SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTT
T ss_pred             cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHcc
Confidence            4676665  68999999999998 78887788888999999999999999999999999999999999999988777899


Q ss_pred             CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCccee
Q 048080           81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGIS  160 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~  160 (223)
                      ++++|+.|+|++|++++..|..|..+++|++|+|++|.+++..+..|..+++|+.+++++|++.|.+...+....+....
T Consensus       102 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~  181 (220)
T 2v9t_B          102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNP  181 (220)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCC
T ss_pred             CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHhCC
Confidence            99999999999999999989999999999999999999998888889999999999999999999988765544443333


Q ss_pred             ecCCCCCCCCC
Q 048080          161 LVGNENLCGGS  171 (223)
Q Consensus       161 ~~~n~~~C~~~  171 (223)
                      .......|..+
T Consensus       182 ~~~~~~~C~~P  192 (220)
T 2v9t_B          182 IETSGARCTSP  192 (220)
T ss_dssp             CBCSCCBEEES
T ss_pred             CCccCCCcCCc
Confidence            33444456554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=7.2e-24  Score=168.23  Aligned_cols=166  Identities=23%  Similarity=0.192  Sum_probs=148.6

Q ss_pred             CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCC
Q 048080            4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCT   83 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~   83 (223)
                      ++++.+++|++|++++|.+. .++  .+...+.|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..++
T Consensus        57 ~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  133 (272)
T 3rfs_A           57 QGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT  133 (272)
T ss_dssp             TTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             cccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC
Confidence            46888999999999999998 554  355677889999999999988888899999999999999999988888899999


Q ss_pred             CCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCcceeec
Q 048080           84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGISLV  162 (223)
Q Consensus        84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l~~~  162 (223)
                      +|++|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+.. .....++.+++.
T Consensus       134 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  213 (272)
T 3rfs_A          134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH  213 (272)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEcc
Confidence            9999999999999888888899999999999999999888888899999999999999999866643 557789999999


Q ss_pred             CCCCCCCCCC
Q 048080          163 GNENLCGGSR  172 (223)
Q Consensus       163 ~n~~~C~~~~  172 (223)
                      +|++.|+|+.
T Consensus       214 ~N~~~~~~~~  223 (272)
T 3rfs_A          214 DNPWDCTCPG  223 (272)
T ss_dssp             SSCBCCCTTT
T ss_pred             CCCccccCcH
Confidence            9999999863

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.91  E-value=3.3e-24  Score=176.82  Aligned_cols=167  Identities=24%  Similarity=0.244  Sum_probs=142.8

Q ss_pred             CCCCCCCCCCCCCeeecccCccccCCChhhhh-ccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccc
Q 048080            1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLR-IITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTL   79 (223)
Q Consensus         1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~   79 (223)
                      +||..+.  +.++.|++++|.+. .++...+. ..+.|++|+|++|.+++..+..|..+++|++|+|++|.++++.+..|
T Consensus        32 ~iP~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  108 (361)
T 2xot_A           32 NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLF  108 (361)
T ss_dssp             SCCSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             ccCccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHh
Confidence            3676665  46899999999998 78877776 78888999999999998888999999999999999999998888899


Q ss_pred             cCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhh---hCCCCCCEEeccCCcCcccCCch--hhhc
Q 048080           80 GGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYL---ENLSFLSFLNLSYNHFEGKVPIE--AIFN  154 (223)
Q Consensus        80 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~l~l~~N~l~~~~~~~--~~~~  154 (223)
                      ..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+++..+..|   ..+++|+.|++++|+++. ++..  ..+.
T Consensus       109 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~  187 (361)
T 2xot_A          109 SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLP  187 (361)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC-CCHHHHHHSC
T ss_pred             CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc-cCHHHhhhcc
Confidence            999999999999999998889999999999999999999997666666   568999999999999995 4422  1222


Q ss_pred             C--CcceeecCCCCCCCCC
Q 048080          155 S--TKGISLVGNENLCGGS  171 (223)
Q Consensus       155 ~--l~~l~~~~n~~~C~~~  171 (223)
                      .  +..+++.+|++.|+|.
T Consensus       188 ~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          188 AWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             HHHHTTEECCSSCEECCHH
T ss_pred             HhhcceEEecCCCccCCcC
Confidence            2  3668999999999984

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.91  E-value=3.6e-24  Score=172.47  Aligned_cols=170  Identities=20%  Similarity=0.242  Sum_probs=147.1

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCCh-hhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccc-cCCccc
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPR-QLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSG-EIPTTL   79 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~-~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~   79 (223)
                      +|+.+.++++|++|++++|.+. .++. ..+...+.|++|++++|.+.+..+..|..+++|++|++++|.+++ ..|..+
T Consensus        93 l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  171 (306)
T 2z66_A           93 MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF  171 (306)
T ss_dssp             EEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred             ChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH
Confidence            4666888899999999999998 5654 566777888999999999998888889999999999999999986 578889


Q ss_pred             cCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhh-cCCc
Q 048080           80 GGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIF-NSTK  157 (223)
Q Consensus        80 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~-~~l~  157 (223)
                      ..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..+.. ... ..++
T Consensus       172 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~  251 (306)
T 2z66_A          172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA  251 (306)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCC
T ss_pred             hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCC
Confidence            99999999999999999888889999999999999999999887778999999999999999999876643 223 4788


Q ss_pred             ceeecCCCCCCCCCC
Q 048080          158 GISLVGNENLCGGSR  172 (223)
Q Consensus       158 ~l~~~~n~~~C~~~~  172 (223)
                      .+++++|++.|+|..
T Consensus       252 ~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          252 FLNLTQNDFACTCEH  266 (306)
T ss_dssp             EEECTTCCEECSGGG
T ss_pred             EEEccCCCeecccCh
Confidence            999999999999853

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.91  E-value=3.4e-24  Score=161.74  Aligned_cols=157  Identities=25%  Similarity=0.352  Sum_probs=137.7

Q ss_pred             CCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCc-CCCCCCCCCeEeccCccccccCCccccCCCCCcEEEc
Q 048080           12 LILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPA-EVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSM   90 (223)
Q Consensus        12 L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L   90 (223)
                      -+.+++++|++. ++|..++.   .+++|++++|.+.+..+. .|..+++|++|++++|.+++..|..|.++++|+.|+|
T Consensus        10 ~~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           10 GTTVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEcCCCCcC-cCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            378999999997 99986644   679999999999977764 5899999999999999999999999999999999999


Q ss_pred             ccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCCCCCCC
Q 048080           91 QDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG  170 (223)
Q Consensus        91 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~~~C~~  170 (223)
                      ++|++++..+..|..+++|++|+|++|++++..|..+..+++|+.|++++|++.|.++..+....+....+.++...|..
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~  165 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCS
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCC
Confidence            99999999998999999999999999999999999999999999999999999999987665554544455566666765


Q ss_pred             CC
Q 048080          171 SR  172 (223)
Q Consensus       171 ~~  172 (223)
                      +.
T Consensus       166 P~  167 (192)
T 1w8a_A          166 PS  167 (192)
T ss_dssp             ST
T ss_pred             Ch
Confidence            44

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=6.4e-24  Score=169.38  Aligned_cols=169  Identities=22%  Similarity=0.226  Sum_probs=152.2

Q ss_pred             CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCC
Q 048080            3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC   82 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l   82 (223)
                      |..|.++++|++|++++|.+. .++...+...+.|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+
T Consensus        98 ~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  176 (285)
T 1ozn_A           98 PATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL  176 (285)
T ss_dssp             TTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             HHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCc
Confidence            678999999999999999998 6766667778888999999999998877889999999999999999998877789999


Q ss_pred             CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeec
Q 048080           83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLV  162 (223)
Q Consensus        83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~  162 (223)
                      ++|+.|++++|.+++..|..|..+++|+.|++++|.+++..+..+..+++|+.+++++|++.|.++..+....++.....
T Consensus       177 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~  256 (285)
T 1ozn_A          177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGS  256 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSE
T ss_pred             cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccc
Confidence            99999999999999998999999999999999999999888888999999999999999999999887766667777777


Q ss_pred             CCCCCCCCCC
Q 048080          163 GNENLCGGSR  172 (223)
Q Consensus       163 ~n~~~C~~~~  172 (223)
                      .+...|..+.
T Consensus       257 ~~~~~c~~p~  266 (285)
T 1ozn_A          257 SSEVPCSLPQ  266 (285)
T ss_dssp             ECCCBEEESG
T ss_pred             cCccccCCch
Confidence            7777776544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.91  E-value=1.2e-23  Score=183.84  Aligned_cols=171  Identities=19%  Similarity=0.178  Sum_probs=152.3

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccc-cCCcccc
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSG-EIPTTLG   80 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~   80 (223)
                      +|..|.++++|+.|++++|.+.+..|...+...+.|++|++++|.+.+..|..|..+++|++|++++|.+++ ..|..|.
T Consensus       391 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  470 (606)
T 3vq2_A          391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA  470 (606)
T ss_dssp             ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred             chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc
Confidence            577889999999999999999855554667778888999999999999899999999999999999999997 4788999


Q ss_pred             CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhc-CCcce
Q 048080           81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFN-STKGI  159 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~-~l~~l  159 (223)
                      .+++|+.|++++|++++..|..|..+++|++|++++|++++..|..+..+++|+.|++++|+++...+...... .++.+
T Consensus       471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l  550 (606)
T 3vq2_A          471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFF  550 (606)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEE
T ss_pred             cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEE
Confidence            99999999999999999999999999999999999999999999999999999999999999995443333343 58999


Q ss_pred             eecCCCCCCCCCC
Q 048080          160 SLVGNENLCGGSR  172 (223)
Q Consensus       160 ~~~~n~~~C~~~~  172 (223)
                      ++.+|++.|+|..
T Consensus       551 ~l~~N~~~c~c~~  563 (606)
T 3vq2_A          551 NLTNNSVACICEH  563 (606)
T ss_dssp             ECCSCCCCCSSTT
T ss_pred             EccCCCcccCCcc
Confidence            9999999999964

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=2.6e-23  Score=163.11  Aligned_cols=144  Identities=20%  Similarity=0.212  Sum_probs=133.9

Q ss_pred             CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCC
Q 048080            3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC   82 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l   82 (223)
                      |.+|.++++|++|++++|.+. .++...+...+.|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+
T Consensus        52 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  130 (251)
T 3m19_A           52 DATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL  130 (251)
T ss_dssp             TTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             HhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccC
Confidence            457999999999999999998 6777777888899999999999998888899999999999999999998888889999


Q ss_pred             CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccC
Q 048080           83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKV  147 (223)
Q Consensus        83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~  147 (223)
                      ++|+.|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.|..
T Consensus       131 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred             CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence            99999999999999887878999999999999999999888889999999999999999999873

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.91  E-value=1e-23  Score=162.40  Aligned_cols=156  Identities=17%  Similarity=0.211  Sum_probs=140.3

Q ss_pred             CCeeecccCccccCCChhhhhccCCceEEEccCCcccccCC-cCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEc
Q 048080           12 LILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFP-AEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSM   90 (223)
Q Consensus        12 L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L   90 (223)
                      -+.+++++|.++ .+|..+.   ..+++|++++|.+++..+ ..|..+++|++|++++|.++++.+..|..+++|++|++
T Consensus        13 ~~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           13 GTTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             TTEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            468999999998 8997653   445899999999998755 56899999999999999999988889999999999999


Q ss_pred             ccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCcceeecCCCCCCC
Q 048080           91 QDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGISLVGNENLCG  169 (223)
Q Consensus        91 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l~~~~n~~~C~  169 (223)
                      ++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|+.|++++|.+++..|.. .....++.+++.+|++.|+
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            999999888888999999999999999999998999999999999999999999876533 4567888999999999999


Q ss_pred             CC
Q 048080          170 GS  171 (223)
Q Consensus       170 ~~  171 (223)
                      |.
T Consensus       169 c~  170 (220)
T 2v70_A          169 CY  170 (220)
T ss_dssp             GG
T ss_pred             Cc
Confidence            85

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=6.3e-24  Score=171.87  Aligned_cols=142  Identities=34%  Similarity=0.558  Sum_probs=76.3

Q ss_pred             CCCCCCCCCCCCeeeccc-CccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080            2 RPPSLGNCQNLILLTTCK-NKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG   80 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~-n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   80 (223)
                      +|++|+++++|++|++++ |.+.+.+|..+ ..++.|++|++++|.+++..|..|..+++|++|++++|.+++..|..|.
T Consensus        68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  146 (313)
T 1ogq_A           68 IPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             cChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence            455555666666666653 55554555443 2334445555555555555555555555555555555555555555555


Q ss_pred             CCCCCcEEEcccCcccccCCccccCCC-CCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcc
Q 048080           81 GCTSLEHLSMQDNSFTGSIPSTLSSLK-SITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG  145 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~  145 (223)
                      .+++|++|++++|++++.+|..+..++ +|++|++++|.+++.+|..+..++ |+.|++++|.+.+
T Consensus       147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~  211 (313)
T 1ogq_A          147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG  211 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred             cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence            555555555555555555555555554 555555555555544444444443 4444444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.90  E-value=2.1e-23  Score=176.08  Aligned_cols=168  Identities=19%  Similarity=0.195  Sum_probs=106.1

Q ss_pred             CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCc------
Q 048080            4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT------   77 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------   77 (223)
                      .+|.++++|++|++++|.+. .++...|..++.|++|+|++|.++...+..|..+++|++|++++|.++.+.+.      
T Consensus        82 ~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~  160 (440)
T 3zyj_A           82 NSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP  160 (440)
T ss_dssp             TTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCT
T ss_pred             HHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCc
Confidence            45555666666666666655 45544455555555555555555544444555555555555555554433221      


Q ss_pred             -------------------cccC----------------------CCCCcEEEcccCcccccCCccccCCCCCCEEECCC
Q 048080           78 -------------------TLGG----------------------CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR  116 (223)
Q Consensus        78 -------------------~~~~----------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  116 (223)
                                         .|.+                      +++|+.|++++|.+++..|..|.++++|+.|++++
T Consensus       161 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  240 (440)
T 3zyj_A          161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ  240 (440)
T ss_dssp             TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence                               2333                      33455555555566655566677777777777777


Q ss_pred             CccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCcceeecCCCCCCCCCC
Q 048080          117 NNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGISLVGNENLCGGSR  172 (223)
Q Consensus       117 N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l~~~~n~~~C~~~~  172 (223)
                      |++++..+..|..+++|+.|++++|+++...+.. .....++.+++.+||+.|+|..
T Consensus       241 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             CceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            7777777777788888888888888888544432 3457788899999999999954

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.90  E-value=6.2e-23  Score=158.96  Aligned_cols=137  Identities=21%  Similarity=0.222  Sum_probs=68.7

Q ss_pred             CCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEE
Q 048080           10 QNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLS   89 (223)
Q Consensus        10 ~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   89 (223)
                      ++|++|++++|.+. .++...+..++.|++|++++|.+....+..|..+++|++|++++|.+++..+..|..+++|+.|+
T Consensus        40 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            44555555555554 33333334444445555555555444444445555555555555555544444455555555555


Q ss_pred             cccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCC
Q 048080           90 MQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP  148 (223)
Q Consensus        90 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~  148 (223)
                      +++|+++ .+|..+..+++|++|+|++|++++..+..|..+++|+.|++++|++.|.++
T Consensus       119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            5555555 344444555555555555555554444445555555555555555555443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=2.7e-23  Score=165.07  Aligned_cols=168  Identities=20%  Similarity=0.178  Sum_probs=119.7

Q ss_pred             CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCC
Q 048080            4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCT   83 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~   83 (223)
                      .+|+++++|++|++++|.+. .++...+...+.|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..++
T Consensus        46 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  124 (276)
T 2z62_A           46 YSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK  124 (276)
T ss_dssp             TTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred             hHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCC
Confidence            36777778888888888777 66665666667778888888888777777777778888888888877766666677778


Q ss_pred             CCcEEEcccCccccc-CCccccCCCCCCEEECCCCccccccchhhhCCC---------------------------CCCE
Q 048080           84 SLEHLSMQDNSFTGS-IPSTLSSLKSITELDLSRNNLSGHIPQYLENLS---------------------------FLSF  135 (223)
Q Consensus        84 ~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~---------------------------~L~~  135 (223)
                      +|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..++                           +|+.
T Consensus       125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~  204 (276)
T 2z62_A          125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE  204 (276)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEE
T ss_pred             CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccE
Confidence            888888888887753 477777778888888888877765554443332                           4555


Q ss_pred             EeccCCcCcccCCch-hhhcCCcceeecCCCCCCCCCC
Q 048080          136 LNLSYNHFEGKVPIE-AIFNSTKGISLVGNENLCGGSR  172 (223)
Q Consensus       136 l~l~~N~l~~~~~~~-~~~~~l~~l~~~~n~~~C~~~~  172 (223)
                      |++++|.+++..+.. .....++.+++.+|++.|+|+.
T Consensus       205 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          205 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             EECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             EECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            566666665433322 3456777889999999999854

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.90  E-value=6e-23  Score=159.05  Aligned_cols=156  Identities=22%  Similarity=0.245  Sum_probs=140.0

Q ss_pred             CCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEc
Q 048080           11 NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSM   90 (223)
Q Consensus        11 ~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L   90 (223)
                      ..+.++.+++++. .+|..+.   +.|++|++++|.+++..+..|..+++|++|++++|.++.+.+..|..+++|+.|+|
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             eCCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            4577999999998 9997653   67799999999999988999999999999999999999887788999999999999


Q ss_pred             ccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc-hhhhcCCcceeecCCCCCCC
Q 048080           91 QDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI-EAIFNSTKGISLVGNENLCG  169 (223)
Q Consensus        91 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~l~~l~~~~n~~~C~  169 (223)
                      ++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|++++|++.+..+. ......++.+++.+|++.|+
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            999999888888999999999999999999 7788899999999999999999965543 24567888999999999999


Q ss_pred             CC
Q 048080          170 GS  171 (223)
Q Consensus       170 ~~  171 (223)
                      |.
T Consensus       175 c~  176 (229)
T 3e6j_A          175 CR  176 (229)
T ss_dssp             BG
T ss_pred             cc
Confidence            85

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.90  E-value=3.8e-23  Score=175.12  Aligned_cols=167  Identities=20%  Similarity=0.169  Sum_probs=126.9

Q ss_pred             CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcC-------------------------CCC
Q 048080            3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAE-------------------------VGN   57 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~-------------------------~~~   57 (223)
                      |.+|.++++|++|++++|.+. .+|...+..++.|++|++++|.+....+..                         |.+
T Consensus       116 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~  194 (452)
T 3zyi_A          116 VGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG  194 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT
T ss_pred             hhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC
Confidence            467777788888888888877 677766666777777777777777555444                         445


Q ss_pred             CCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEe
Q 048080           58 LKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLN  137 (223)
Q Consensus        58 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~  137 (223)
                      +++|++|++++|.+++. | .+..+++|+.|++++|.+++..|..|.++++|+.|++++|++++..+..|..+++|+.|+
T Consensus       195 l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  272 (452)
T 3zyi_A          195 LFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN  272 (452)
T ss_dssp             CTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence            55566666666666543 2 356677788888888888877788888889999999999999888888899999999999


Q ss_pred             ccCCcCcccCCch-hhhcCCcceeecCCCCCCCCCC
Q 048080          138 LSYNHFEGKVPIE-AIFNSTKGISLVGNENLCGGSR  172 (223)
Q Consensus       138 l~~N~l~~~~~~~-~~~~~l~~l~~~~n~~~C~~~~  172 (223)
                      +++|++++..+.. .....++.+++.+||+.|+|..
T Consensus       273 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             CCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             CCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            9999998654432 4467788999999999999954

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=4e-23  Score=185.50  Aligned_cols=164  Identities=32%  Similarity=0.589  Sum_probs=126.3

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcc---
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTT---   78 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---   78 (223)
                      +|.+++++++|++|++++|++.+.+|..+. ..+.|++|++++|.+.+..|..+..+++|++|++++|.+++.+|..   
T Consensus       482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~  560 (768)
T 3rgz_A          482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK  560 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred             CCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence            566777777777777777777766666543 3555677788888777777777777888888888887777655543   


Q ss_pred             -------------------------------------------------------------------ccCCCCCcEEEcc
Q 048080           79 -------------------------------------------------------------------LGGCTSLEHLSMQ   91 (223)
Q Consensus        79 -------------------------------------------------------------------~~~l~~L~~L~L~   91 (223)
                                                                                         +..+++|+.||++
T Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs  640 (768)
T 3rgz_A          561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS  640 (768)
T ss_dssp             TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred             ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence                                                                               2334667888888


Q ss_pred             cCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCcceeecCCCC
Q 048080           92 DNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGISLVGNEN  166 (223)
Q Consensus        92 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l~~~~n~~  166 (223)
                      +|+++|.+|..++.+++|+.|+|++|.++|.+|..+..+++|+.||+++|+++|.+|.. .....++.+++++|+.
T Consensus       641 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             SSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred             CCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence            88888888888888888888888888888888888888888888999888888888754 5566788888888864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.2e-22  Score=161.16  Aligned_cols=146  Identities=21%  Similarity=0.263  Sum_probs=135.6

Q ss_pred             CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCC
Q 048080            4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCT   83 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~   83 (223)
                      +++.++++|++|++++|.+. .++...+...+.|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..++
T Consensus        79 ~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  157 (272)
T 3rfs_A           79 SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT  157 (272)
T ss_dssp             GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc
Confidence            46889999999999999998 78877778888899999999999988888899999999999999999988888899999


Q ss_pred             CCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch
Q 048080           84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE  150 (223)
Q Consensus        84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~  150 (223)
                      +|+.|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++.|.+|..
T Consensus       158 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l  224 (272)
T 3rfs_A          158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI  224 (272)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHH
Confidence            9999999999999888888899999999999999999988888999999999999999999988843

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.89  E-value=7.8e-23  Score=178.74  Aligned_cols=169  Identities=24%  Similarity=0.277  Sum_probs=140.2

Q ss_pred             CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcccccc---CCccc
Q 048080            3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGE---IPTTL   79 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~   79 (223)
                      |.+|.++++|++|++++|++.+..|...+...+.|++|++++|.+.+..+..|..+++|++|++++|.+++.   .+..+
T Consensus       393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  472 (606)
T 3t6q_A          393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL  472 (606)
T ss_dssp             TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG
T ss_pred             HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhh
Confidence            567777788888888888877555555566677778888888888877788888888888888888888762   33568


Q ss_pred             cCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCcc
Q 048080           80 GGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKG  158 (223)
Q Consensus        80 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~  158 (223)
                      ..+++|+.|++++|++++..|..|..+++|++|++++|++++..|..+..++.| .|++++|++++..|.. .....++.
T Consensus       473 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~  551 (606)
T 3t6q_A          473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRT  551 (606)
T ss_dssp             GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSE
T ss_pred             ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCE
Confidence            888999999999999998888889999999999999999999899999999999 9999999999766643 56788999


Q ss_pred             eeecCCCCCCCCCC
Q 048080          159 ISLVGNENLCGGSR  172 (223)
Q Consensus       159 l~~~~n~~~C~~~~  172 (223)
                      +++.+||+.|+|..
T Consensus       552 L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          552 INLRQNPLDCTCSN  565 (606)
T ss_dssp             EECTTCCEECSGGG
T ss_pred             EeCCCCCccccCCc
Confidence            99999999999854

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.89  E-value=2.5e-22  Score=153.10  Aligned_cols=145  Identities=20%  Similarity=0.252  Sum_probs=120.0

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG   81 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   81 (223)
                      +|..+.  ++|++|++++|++. .++...+...+.|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..
T Consensus        22 ~p~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   98 (208)
T 2o6s_A           22 VPTGIP--AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK   98 (208)
T ss_dssp             CCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCCC--CCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC
Confidence            555443  57888999999888 777777777788889999999888777777888889999999999888777777888


Q ss_pred             CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc
Q 048080           82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI  149 (223)
Q Consensus        82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~  149 (223)
                      +++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++.+.++.
T Consensus        99 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  166 (208)
T 2o6s_A           99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  166 (208)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTT
T ss_pred             ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCC
Confidence            88999999999988877777788888899999999988877777788888899999999988887763

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=2.9e-22  Score=158.71  Aligned_cols=147  Identities=22%  Similarity=0.240  Sum_probs=135.4

Q ss_pred             CCC-CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080            2 RPP-SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG   80 (223)
Q Consensus         2 ip~-~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   80 (223)
                      +|+ .|.++++|++|++++|.+. .+|...+...+.|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.
T Consensus        76 i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  154 (270)
T 2o6q_A           76 LPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD  154 (270)
T ss_dssp             CCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             eChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence            444 4688999999999999998 88888888888999999999999988888999999999999999999988777899


Q ss_pred             CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc
Q 048080           81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI  149 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~  149 (223)
                      .+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++.|.++.
T Consensus       155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence            999999999999999988888899999999999999999987777899999999999999999998873

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.89  E-value=1e-22  Score=172.19  Aligned_cols=166  Identities=18%  Similarity=0.153  Sum_probs=145.8

Q ss_pred             CCCCCCCeeecccCccccCCChhhhhc--------------------------------------cCCceEEEccCCccc
Q 048080            7 GNCQNLILLTTCKNKLSGTVPRQLLRI--------------------------------------ITRSVLLDLFDNLLS   48 (223)
Q Consensus         7 ~~l~~L~~L~l~~n~i~~~~p~~~~~~--------------------------------------~~~l~~L~L~~n~l~   48 (223)
                      ..+++|++|++++|++.+.+|..++..                                      .+.|++|++++|.+.
T Consensus       209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  288 (455)
T 3v47_A          209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF  288 (455)
T ss_dssp             TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC
T ss_pred             cccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccc
Confidence            355789999999999876666554432                                      146799999999999


Q ss_pred             ccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhh
Q 048080           49 GHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLE  128 (223)
Q Consensus        49 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~  128 (223)
                      +..|..|..+++|++|++++|.+++..|..|.++++|+.|++++|.+++..|..|..+++|++|++++|.+++..|..|.
T Consensus       289 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  368 (455)
T 3v47_A          289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL  368 (455)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc
Confidence            99999999999999999999999999899999999999999999999988899999999999999999999988899999


Q ss_pred             CCCCCCEEeccCCcCcccCCch-hhhcCCcceeecCCCCCCCCCC
Q 048080          129 NLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGISLVGNENLCGGSR  172 (223)
Q Consensus       129 ~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l~~~~n~~~C~~~~  172 (223)
                      .+++|+.|++++|++++..+.. .....++.+++++|++.|+|+.
T Consensus       369 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          369 GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            9999999999999999754432 4567889999999999999865

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.89  E-value=1.6e-22  Score=176.84  Aligned_cols=171  Identities=19%  Similarity=0.211  Sum_probs=147.9

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccc-cccCCcccc
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMF-SGEIPTTLG   80 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~   80 (223)
                      ++..+..+++|+.+++..+......+...+.....++.+++++|.+.+..+..+..+++|+.|++++|.+ .+..|+.|.
T Consensus       412 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~  491 (635)
T 4g8a_A          412 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT  491 (635)
T ss_dssp             ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred             ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhh
Confidence            3567788889999999888887666667778888889999999999988889999999999999999974 456788899


Q ss_pred             CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-h-hhcCCcc
Q 048080           81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-A-IFNSTKG  158 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~-~~~~l~~  158 (223)
                      .+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|++++|++++..|.. . ....++.
T Consensus       492 ~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~  571 (635)
T 4g8a_A          492 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF  571 (635)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCE
T ss_pred             hccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCE
Confidence            9999999999999999988999999999999999999999888889999999999999999999876643 2 2357888


Q ss_pred             eeecCCCCCCCCCC
Q 048080          159 ISLVGNENLCGGSR  172 (223)
Q Consensus       159 l~~~~n~~~C~~~~  172 (223)
                      +++++|||.|+|..
T Consensus       572 L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          572 LNLTQNDFACTCEH  585 (635)
T ss_dssp             EECTTCCBCCSGGG
T ss_pred             EEeeCCCCcccCCc
Confidence            99999999999953

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.89  E-value=4.7e-23  Score=155.62  Aligned_cols=156  Identities=24%  Similarity=0.253  Sum_probs=133.2

Q ss_pred             CCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcc
Q 048080           12 LILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQ   91 (223)
Q Consensus        12 L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~   91 (223)
                      -+.+++++|++. ++|..++   +.+++|++++|.++ .+|..|..+++|++|++++|.++++.+..|.++++|+.|+|+
T Consensus        12 ~~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           12 DTVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence            367999999998 9997654   56799999999999 677899999999999999999999988999999999999999


Q ss_pred             cCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCCCCCCCC
Q 048080           92 DNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGGS  171 (223)
Q Consensus        92 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~~~C~~~  171 (223)
                      +|++++..+.+|..+++|++|+|++|.+++..+..|..+++|+.+++++|++.|.+...+....+.......+...|..+
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P  166 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGP  166 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEES
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCc
Confidence            99999988889999999999999999999877778999999999999999999998876554444332223334456554


Q ss_pred             C
Q 048080          172 R  172 (223)
Q Consensus       172 ~  172 (223)
                      .
T Consensus       167 ~  167 (193)
T 2wfh_A          167 G  167 (193)
T ss_dssp             G
T ss_pred             h
Confidence            3

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=2.1e-22  Score=163.94  Aligned_cols=161  Identities=19%  Similarity=0.265  Sum_probs=97.6

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCC---------CCCCCeEeccCcccc
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGN---------LKHLVSLDISSNMFS   72 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~---------l~~L~~L~l~~n~l~   72 (223)
                      ||++|+++++|++|++++|.+. .+|..+ ..++.|++|++++|.+.+..|..+..         +++|++|++++|.++
T Consensus       119 lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  196 (328)
T 4fcg_A          119 LPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR  196 (328)
T ss_dssp             CCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC
T ss_pred             hhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC
Confidence            4555555555555555555555 555443 23344455555555555555544432         556666666666665


Q ss_pred             ccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-h
Q 048080           73 GEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-A  151 (223)
Q Consensus        73 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~  151 (223)
                       .+|..+..+++|+.|++++|.+++ +|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|.. .
T Consensus       197 -~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~  274 (328)
T 4fcg_A          197 -SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH  274 (328)
T ss_dssp             -CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred             -cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh
Confidence             455556666667777777776663 4445666677777777777776677766777777777777777666666633 4


Q ss_pred             hhcCCcceeecCCCC
Q 048080          152 IFNSTKGISLVGNEN  166 (223)
Q Consensus       152 ~~~~l~~l~~~~n~~  166 (223)
                      ....++.+++++|+.
T Consensus       275 ~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          275 RLTQLEKLDLRGCVN  289 (328)
T ss_dssp             GCTTCCEEECTTCTT
T ss_pred             cCCCCCEEeCCCCCc
Confidence            455666677777654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.88  E-value=6.9e-23  Score=185.64  Aligned_cols=66  Identities=24%  Similarity=0.342  Sum_probs=40.7

Q ss_pred             ccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCc----------------------ccCCchhhhcCCccee
Q 048080          103 LSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE----------------------GKVPIEAIFNSTKGIS  160 (223)
Q Consensus       103 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~----------------------~~~~~~~~~~~l~~l~  160 (223)
                      |.++++|+.|+|++|.+++..|..|..+++|+.|++++|.++                      +..|.  .+..+..++
T Consensus       476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~  553 (844)
T 3j0a_A          476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPD--VFVSLSVLD  553 (844)
T ss_dssp             SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSC--CCSSCCEEE
T ss_pred             hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChh--HhCCcCEEE
Confidence            444455555555555555555555555555555555555554                      33332  245677899


Q ss_pred             ecCCCCCCCC
Q 048080          161 LVGNENLCGG  170 (223)
Q Consensus       161 ~~~n~~~C~~  170 (223)
                      +.+||+.|+|
T Consensus       554 l~~Np~~C~c  563 (844)
T 3j0a_A          554 ITHNKFICEC  563 (844)
T ss_dssp             EEEECCCCSS
T ss_pred             ecCCCccccc
Confidence            9999999988

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=2.3e-22  Score=163.70  Aligned_cols=162  Identities=19%  Similarity=0.173  Sum_probs=143.1

Q ss_pred             CCCCCCCCCCCCCeeecccCccccCCChhhh--------hccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcccc
Q 048080            1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLL--------RIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFS   72 (223)
Q Consensus         1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~--------~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~   72 (223)
                      .||+.|+++++|++|++++|.+.+.+|..+.        ...+.|++|++++|.++ .+|..+..+++|++|++++|.++
T Consensus       141 ~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred             cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence            4799999999999999999888889998763        34778899999999999 78888999999999999999999


Q ss_pred             ccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-h
Q 048080           73 GEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-A  151 (223)
Q Consensus        73 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~  151 (223)
                      + .|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|.. .
T Consensus       220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~  298 (328)
T 4fcg_A          220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA  298 (328)
T ss_dssp             C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred             c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence            5 5667999999999999999999999999999999999999999999999999999999999999999999988854 4


Q ss_pred             hhcCCcceeecCC
Q 048080          152 IFNSTKGISLVGN  164 (223)
Q Consensus       152 ~~~~l~~l~~~~n  164 (223)
                      ....+..+.+..+
T Consensus       299 ~L~~L~~l~l~~~  311 (328)
T 4fcg_A          299 QLPANCIILVPPH  311 (328)
T ss_dssp             GSCTTCEEECCGG
T ss_pred             hccCceEEeCCHH
Confidence            4455555555444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.88  E-value=1.3e-21  Score=173.30  Aligned_cols=172  Identities=20%  Similarity=0.182  Sum_probs=128.2

Q ss_pred             CCCCCCCCeeecccCccc--cCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCc------
Q 048080            6 LGNCQNLILLTTCKNKLS--GTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT------   77 (223)
Q Consensus         6 ~~~l~~L~~L~l~~n~i~--~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------   77 (223)
                      |..+++|+.|++++|.+.  +.+|. .+...+.|++|++++|.+++..+..|.++++|++|++++|.+++..+.      
T Consensus       450 ~~~~~~L~~L~l~~n~l~~~~~~p~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  528 (680)
T 1ziw_A          450 FALVPSLQRLMLRRVALKNVDSSPS-PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP  528 (680)
T ss_dssp             TTTCTTCCEEECTTSCCBCTTCSSC-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC
T ss_pred             hhcCcccccchhccccccccccCCc-ccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc
Confidence            333444444444444432  12333 234556678888888888877777788888888888888888765322      


Q ss_pred             --cccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-h-hh
Q 048080           78 --TLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-A-IF  153 (223)
Q Consensus        78 --~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~-~~  153 (223)
                        .|.++++|+.|++++|+++...+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++++..+.. . .+
T Consensus       529 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  608 (680)
T 1ziw_A          529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF  608 (680)
T ss_dssp             CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHH
T ss_pred             chhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccc
Confidence              3678888999999999888665567899999999999999999877778889999999999999999765543 2 57


Q ss_pred             cCCcceeecCCCCCCCCCC-CCCcce
Q 048080          154 NSTKGISLVGNENLCGGSR-KSKFSI  178 (223)
Q Consensus       154 ~~l~~l~~~~n~~~C~~~~-~~~~~~  178 (223)
                      ..++.+++.+|||.|+|.. .+...|
T Consensus       609 ~~L~~l~l~~N~~~c~c~~~~~~~~~  634 (680)
T 1ziw_A          609 RNLTELDMRFNPFDCTCESIAWFVNW  634 (680)
T ss_dssp             TTCSEEECTTCCCCBCCCCCSSEECC
T ss_pred             cccCEEEccCCCcccCCccHHHHHHH
Confidence            8899999999999999975 443333

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=2.4e-21  Score=147.67  Aligned_cols=156  Identities=21%  Similarity=0.173  Sum_probs=138.1

Q ss_pred             CCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcc
Q 048080           12 LILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQ   91 (223)
Q Consensus        12 L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~   91 (223)
                      -+.++.+++.+. .+|..+   .+.+++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus         9 ~~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A            9 GTTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             TTEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            467889999998 888654   4567999999999998888889999999999999999998877789999999999999


Q ss_pred             cCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc-hhhhcCCcceeecCCCCCCCC
Q 048080           92 DNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI-EAIFNSTKGISLVGNENLCGG  170 (223)
Q Consensus        92 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~l~~l~~~~n~~~C~~  170 (223)
                      +|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+. ......++.+++.+|++.|++
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  164 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  164 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC
Confidence            9999987777889999999999999999988888899999999999999999965553 245678899999999999987


Q ss_pred             C
Q 048080          171 S  171 (223)
Q Consensus       171 ~  171 (223)
                      +
T Consensus       165 ~  165 (208)
T 2o6s_A          165 P  165 (208)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=6.2e-22  Score=159.33  Aligned_cols=169  Identities=21%  Similarity=0.283  Sum_probs=145.3

Q ss_pred             CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccc-cCCcCCCCCCCCCeEeccCccccccCCccccCC
Q 048080            4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSG-HFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC   82 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l   82 (223)
                      ..+.++++|++|++++|.+. .++...+...+.|++|++++|.+.+ ..|..|..+++|++|++++|.+++..|..|..+
T Consensus       120 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  198 (306)
T 2z66_A          120 SVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL  198 (306)
T ss_dssp             TTTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             hhhhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCC
Confidence            47899999999999999998 5555566777888999999999986 678899999999999999999999889999999


Q ss_pred             CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCC-CCCEEeccCCcCcccCCchhh---hcCCcc
Q 048080           83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLS-FLSFLNLSYNHFEGKVPIEAI---FNSTKG  158 (223)
Q Consensus        83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~l~l~~N~l~~~~~~~~~---~~~l~~  158 (223)
                      ++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+..++ +|+.|++++|++.|.++..++   ....+.
T Consensus       199 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~  278 (306)
T 2z66_A          199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ  278 (306)
T ss_dssp             TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGG
T ss_pred             CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhh
Confidence            9999999999999988787899999999999999999999999999985 899999999999998875433   333444


Q ss_pred             eeecCCCCCCCCCCC
Q 048080          159 ISLVGNENLCGGSRK  173 (223)
Q Consensus       159 l~~~~n~~~C~~~~~  173 (223)
                      +....+...|..+..
T Consensus       279 ~~~~~~~~~C~~p~~  293 (306)
T 2z66_A          279 LLVEVERMECATPSD  293 (306)
T ss_dssp             GBSCGGGCBEEESGG
T ss_pred             hhccccccccCCchh
Confidence            555566677765443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.87  E-value=8.4e-22  Score=172.35  Aligned_cols=146  Identities=21%  Similarity=0.247  Sum_probs=132.4

Q ss_pred             CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080            1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG   80 (223)
Q Consensus         1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   80 (223)
                      +||+.+.  +++++|++++|+|+ .+|+..|..++.|++|+|++|.|+++.+++|.++++|++|+|++|.+++..++.|.
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~  121 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS  121 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred             ccCCCCC--cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence            4776664  57999999999999 89988888899999999999999988899999999999999999999988888999


Q ss_pred             CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccc-cchhhhCCCCCCEEeccCCcCcccCCc
Q 048080           81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH-IPQYLENLSFLSFLNLSYNHFEGKVPI  149 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~l~l~~N~l~~~~~~  149 (223)
                      ++++|++|++++|++++..+..|+++++|++|++++|.+++. .|..+..+++|+.|++++|++++..+.
T Consensus       122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            999999999999999988888899999999999999999864 578889999999999999999876553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.87  E-value=8.1e-22  Score=167.83  Aligned_cols=168  Identities=20%  Similarity=0.179  Sum_probs=131.6

Q ss_pred             CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccC--------------
Q 048080            3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISS--------------   68 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~--------------   68 (223)
                      |.+|.++++|+.|++++|.+. .+|...+...+.|+.|++++|.+.+..+..|..+++|+.|++++              
T Consensus       145 ~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  223 (477)
T 2id5_A          145 HRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG  223 (477)
T ss_dssp             TTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred             hhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC
Confidence            456777788888888888877 67777677777778888888888777666666666555555444              


Q ss_pred             ----------ccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEec
Q 048080           69 ----------NMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNL  138 (223)
Q Consensus        69 ----------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l  138 (223)
                                |.++...+..|..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..|..|..+++|+.|++
T Consensus       224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  303 (477)
T 2id5_A          224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV  303 (477)
T ss_dssp             CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred             ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence                      4555433346778889999999999999888888899999999999999999888889999999999999


Q ss_pred             cCCcCcccCCch-hhhcCCcceeecCCCCCCCCC
Q 048080          139 SYNHFEGKVPIE-AIFNSTKGISLVGNENLCGGS  171 (223)
Q Consensus       139 ~~N~l~~~~~~~-~~~~~l~~l~~~~n~~~C~~~  171 (223)
                      ++|.+++..+.. .....++.+++.+|++.|+|.
T Consensus       304 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          304 SGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             CSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             CCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            999998644432 345678889999999999984

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=3e-21  Score=153.21  Aligned_cols=145  Identities=21%  Similarity=0.250  Sum_probs=130.8

Q ss_pred             CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080            1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG   80 (223)
Q Consensus         1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   80 (223)
                      +||+.+.  ++|++|++++|.+. .++...+...+.|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|.
T Consensus        21 ~ip~~l~--~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (276)
T 2z62_A           21 KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS   97 (276)
T ss_dssp             SCCSSSC--TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             ccCCCCC--CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence            3677665  57999999999998 77776677788889999999999988888999999999999999999988889999


Q ss_pred             CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccc-cchhhhCCCCCCEEeccCCcCcccCC
Q 048080           81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH-IPQYLENLSFLSFLNLSYNHFEGKVP  148 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~l~l~~N~l~~~~~  148 (223)
                      ++++|++|++++|.+++..+..+..+++|++|++++|.+++. +|..+..+++|+.|++++|.+++..+
T Consensus        98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A           98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            999999999999999988777899999999999999999974 58999999999999999999986543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.87  E-value=9.7e-22  Score=161.35  Aligned_cols=167  Identities=22%  Similarity=0.245  Sum_probs=124.8

Q ss_pred             CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCC-cCCCCCCCCCeEeccCc-cccccCCcccc
Q 048080            3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFP-AEVGNLKHLVSLDISSN-MFSGEIPTTLG   80 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~   80 (223)
                      |.+|+++++|++|++++|++. .+|...+...+.|++|++++|.+....+ ..|..+++|++|++++| .+....+..|.
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  171 (353)
T 2z80_A           93 EDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA  171 (353)
T ss_dssp             TTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred             HhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc
Confidence            466888888888888888887 7887777777788888888888885544 47888888888888888 46666677788


Q ss_pred             CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCcc------------------------ccc--------------
Q 048080           81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNL------------------------SGH--------------  122 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l------------------------~~~--------------  122 (223)
                      .+++|+.|++++|.+++..|..+..+++|++|++++|.+                        ++.              
T Consensus       172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l  251 (353)
T 2z80_A          172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI  251 (353)
T ss_dssp             TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCC
T ss_pred             CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchh
Confidence            888888888888888877777777766665555555544                        321              


Q ss_pred             -----------------cchhhhCCCCCCEEeccCCcCcccCCch--hhhcCCcceeecCCCCCCCCC
Q 048080          123 -----------------IPQYLENLSFLSFLNLSYNHFEGKVPIE--AIFNSTKGISLVGNENLCGGS  171 (223)
Q Consensus       123 -----------------~p~~~~~l~~L~~l~l~~N~l~~~~~~~--~~~~~l~~l~~~~n~~~C~~~  171 (223)
                                       +|..+..+++|+.|++++|+++. +|..  .....++.+++.+|++.|+|+
T Consensus       252 ~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence                             23345667788888888888874 4432  446678888999999888874

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.86  E-value=6.7e-22  Score=171.42  Aligned_cols=169  Identities=26%  Similarity=0.250  Sum_probs=140.6

Q ss_pred             CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCC-cCCCCCCCCCeEeccCccccccCCccccC
Q 048080            3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFP-AEVGNLKHLVSLDISSNMFSGEIPTTLGG   81 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   81 (223)
                      |..+.++++|++|++++|.+. .+|.. +...+.|++|++++|.+.+..+ ..|..+++|++|++++|.+.+..|..|.+
T Consensus       366 ~~~~~~~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  443 (570)
T 2z63_A          366 SQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG  443 (570)
T ss_dssp             EHHHHTCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred             cccccccCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc
Confidence            345666777778888877777 55555 5556777888888888886655 56888999999999999999888888999


Q ss_pred             CCCCcEEEcccCccc-ccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCcce
Q 048080           82 CTSLEHLSMQDNSFT-GSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGI  159 (223)
Q Consensus        82 l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l  159 (223)
                      +++|+.|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+.. .....++.+
T Consensus       444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  523 (570)
T 2z63_A          444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI  523 (570)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence            999999999999987 578888999999999999999999888999999999999999999998766542 456778899


Q ss_pred             eecCCCCCCCCCCC
Q 048080          160 SLVGNENLCGGSRK  173 (223)
Q Consensus       160 ~~~~n~~~C~~~~~  173 (223)
                      ++.+|++.|+|+..
T Consensus       524 ~l~~N~~~~~~~~~  537 (570)
T 2z63_A          524 WLHTNPWDCSCPRI  537 (570)
T ss_dssp             ECCSSCBCCCTTTT
T ss_pred             EecCCcccCCCcch
Confidence            99999999998753

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=8.4e-21  Score=151.99  Aligned_cols=160  Identities=25%  Similarity=0.207  Sum_probs=129.3

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG   81 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   81 (223)
                      ||..+.  ++++.|++++|.+. .++...+...+.|++|++++|.+++..+.  ..+++|++|++++|.++ ..|..+..
T Consensus        25 ip~~~~--~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~   98 (290)
T 1p9a_G           25 LPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQT   98 (290)
T ss_dssp             CCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTT
T ss_pred             CCCCCC--CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhcc
Confidence            565554  57888888888887 56555666677778888888888865443  67888888888888888 56777888


Q ss_pred             CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCccee
Q 048080           82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGIS  160 (223)
Q Consensus        82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l~  160 (223)
                      +++|+.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|+++...+.. .....++.++
T Consensus        99 l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  178 (290)
T 1p9a_G           99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL  178 (290)
T ss_dssp             CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence            999999999999999887788999999999999999999888888889999999999999998544432 3467788899


Q ss_pred             ecCCCCC
Q 048080          161 LVGNENL  167 (223)
Q Consensus       161 ~~~n~~~  167 (223)
                      +++|...
T Consensus       179 L~~N~l~  185 (290)
T 1p9a_G          179 LQENSLY  185 (290)
T ss_dssp             CCSSCCC
T ss_pred             CCCCcCC
Confidence            9988764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.86  E-value=2.4e-21  Score=167.91  Aligned_cols=170  Identities=18%  Similarity=0.237  Sum_probs=146.5

Q ss_pred             CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcccc-ccCCccccC
Q 048080            3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFS-GEIPTTLGG   81 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~   81 (223)
                      |+.+.++++|+.|++++|.+.+..|...+...+.|++|++++|.+.+..+..|..+++|++|++++|.++ +..|..+..
T Consensus       389 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~  468 (570)
T 2z63_A          389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE  468 (570)
T ss_dssp             EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred             cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence            4558899999999999999985556566777888999999999999999999999999999999999997 578899999


Q ss_pred             CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhh-cCCc--c
Q 048080           82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIF-NSTK--G  158 (223)
Q Consensus        82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~-~~l~--~  158 (223)
                      +++|+.|++++|++++..|..|..+++|++|++++|++++..+..+..+++|+.+++++|+++|.+|..+.. .++.  .
T Consensus       469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~  548 (570)
T 2z63_A          469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS  548 (570)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTG
T ss_pred             ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhcc
Confidence            999999999999999988999999999999999999999988888999999999999999999999965443 2222  1


Q ss_pred             eeecCCCCCCCCCCC
Q 048080          159 ISLVGNENLCGGSRK  173 (223)
Q Consensus       159 l~~~~n~~~C~~~~~  173 (223)
                      ..+.+.+ .|..+..
T Consensus       549 ~~~~~~~-~C~~~~~  562 (570)
T 2z63_A          549 QKEQGSA-KCSGSGK  562 (570)
T ss_dssp             GGEESCC-BBTTTCC
T ss_pred             ccCCCch-hhCCCCC
Confidence            2344555 7876543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.85  E-value=6e-21  Score=168.96  Aligned_cols=171  Identities=19%  Similarity=0.266  Sum_probs=137.5

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCC--------cCCCCCCCCCeEeccCccccc
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFP--------AEVGNLKHLVSLDISSNMFSG   73 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~   73 (223)
                      +|.+|.++++|++|++++|++. .+|...+...+.|++|++++|.+++..+        ..|.++++|++|++++|.++.
T Consensus       472 ~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~  550 (680)
T 1ziw_A          472 SPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE  550 (680)
T ss_dssp             SSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC
T ss_pred             CCcccccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC
Confidence            5889999999999999999999 7888888888999999999999986533        237889999999999999997


Q ss_pred             cCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhh-CCCCCCEEeccCCcCcccCCc-hh
Q 048080           74 EIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLE-NLSFLSFLNLSYNHFEGKVPI-EA  151 (223)
Q Consensus        74 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~l~l~~N~l~~~~~~-~~  151 (223)
                      +.+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+. .+++|+.+++++|++.|.|+. .+
T Consensus       551 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~  630 (680)
T 1ziw_A          551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAW  630 (680)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSS
T ss_pred             CCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHH
Confidence            7667899999999999999999988888899999999999999999998888887 789999999999999999985 44


Q ss_pred             hhcCCcce--eec--CCCCCCCCCCC
Q 048080          152 IFNSTKGI--SLV--GNENLCGGSRK  173 (223)
Q Consensus       152 ~~~~l~~l--~~~--~n~~~C~~~~~  173 (223)
                      +...+...  .+.  .....|.++..
T Consensus       631 ~~~~~~~~~~~~~~~~~~~~C~~p~~  656 (680)
T 1ziw_A          631 FVNWINETHTNIPELSSHYLCNTPPH  656 (680)
T ss_dssp             EECCSSCC------------------
T ss_pred             HHHHHHhcCcccccccCCcEECCchH
Confidence            43333221  111  13346766543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.85  E-value=7.2e-21  Score=161.97  Aligned_cols=141  Identities=23%  Similarity=0.176  Sum_probs=64.8

Q ss_pred             CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCC
Q 048080            4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCT   83 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~   83 (223)
                      .+|.++++|++|++++|.+. .++...+..++.|++|++++|.++...+..|.++++|++|++++|.+.+..+..|..++
T Consensus        50 ~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  128 (477)
T 2id5_A           50 DEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY  128 (477)
T ss_dssp             TTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence            34444444444444444444 23222333334444444444444433333444444444444444444444444444444


Q ss_pred             CCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcc
Q 048080           84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG  145 (223)
Q Consensus        84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~  145 (223)
                      +|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus       129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            44444444444444444444444445555554444444444444444444455444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.85  E-value=1.9e-21  Score=160.26  Aligned_cols=147  Identities=20%  Similarity=0.130  Sum_probs=130.8

Q ss_pred             CCCCC-CCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080            3 PPSLG-NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG   81 (223)
Q Consensus         3 p~~~~-~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   81 (223)
                      +..|. ++++|++|++++|++. .++...|..++.|++|+|++|.++...+..|..+++|++|+|++|.++++.+..|.+
T Consensus        56 ~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~  134 (361)
T 2xot_A           56 AEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED  134 (361)
T ss_dssp             TTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             hhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC
Confidence            34566 8999999999999998 788777888889999999999999888889999999999999999999998999999


Q ss_pred             CCCCcEEEcccCcccccCCccc---cCCCCCCEEECCCCccccccchhhhCCCC--CCEEeccCCcCcccCCch
Q 048080           82 CTSLEHLSMQDNSFTGSIPSTL---SSLKSITELDLSRNNLSGHIPQYLENLSF--LSFLNLSYNHFEGKVPIE  150 (223)
Q Consensus        82 l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~--L~~l~l~~N~l~~~~~~~  150 (223)
                      +++|+.|+|++|++++..+..|   ..+++|+.|+|++|.+++..+..+..++.  ++.|++++|++.|.|...
T Consensus       135 l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~  208 (361)
T 2xot_A          135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLY  208 (361)
T ss_dssp             CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHH
T ss_pred             cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcH
Confidence            9999999999999997666666   56899999999999999877788888887  489999999999988643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.85  E-value=1.6e-20  Score=158.96  Aligned_cols=160  Identities=20%  Similarity=0.205  Sum_probs=81.2

Q ss_pred             CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCC
Q 048080            4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCT   83 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~   83 (223)
                      .+|+++++|++|++++|.+. .++...+..++.|++|+|++|.++...+..|..+++|++|++++|.++.+.+..|..++
T Consensus        93 ~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  171 (452)
T 3zyi_A           93 DTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP  171 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred             HHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC
Confidence            34444445555555555444 33333344444445555555554444444444455555555555554444444444455


Q ss_pred             CCcEEEccc-CcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCcceee
Q 048080           84 SLEHLSMQD-NSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGISL  161 (223)
Q Consensus        84 ~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l~~  161 (223)
                      +|+.|++++ |.+....+..|..+++|++|++++|.+++. | .+..+++|+.|++++|.+.+..+.. .....++.+++
T Consensus       172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  249 (452)
T 3zyi_A          172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV  249 (452)
T ss_dssp             TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEEC
T ss_pred             cccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEe
Confidence            555555554 233333333455556666666666666533 3 3556666666666666666544422 33456666777


Q ss_pred             cCCCC
Q 048080          162 VGNEN  166 (223)
Q Consensus       162 ~~n~~  166 (223)
                      .+|..
T Consensus       250 ~~n~l  254 (452)
T 3zyi_A          250 MNSQV  254 (452)
T ss_dssp             TTSCC
T ss_pred             CCCcC
Confidence            66644

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.85  E-value=7.9e-21  Score=160.58  Aligned_cols=140  Identities=19%  Similarity=0.201  Sum_probs=129.5

Q ss_pred             CCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEE
Q 048080           10 QNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLS   89 (223)
Q Consensus        10 ~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   89 (223)
                      ++|+.|++++|.+. .++...+...+.|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus       275 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          275 SGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             SCCCEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             cCceEEEecCcccc-ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence            68999999999999 45545567778889999999999999999999999999999999999988899999999999999


Q ss_pred             cccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch
Q 048080           90 MQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE  150 (223)
Q Consensus        90 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~  150 (223)
                      +++|++++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|+++|.+|..
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  414 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  414 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence            9999999998999999999999999999999877778899999999999999999999853

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.85  E-value=1.5e-20  Score=164.36  Aligned_cols=163  Identities=19%  Similarity=0.244  Sum_probs=137.5

Q ss_pred             CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080            1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG   80 (223)
Q Consensus         1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   80 (223)
                      +||..+.  +++++|++++|.+. .++...+...+.|++|++++|.+++..|..|.++++|++|++++|.+++..|+.|.
T Consensus        25 ~ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  101 (606)
T 3vq2_A           25 KVPDDIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS  101 (606)
T ss_dssp             SCCTTSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred             cCCCCCC--CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC
Confidence            3677665  78999999999998 67776677788889999999999988889999999999999999999988899999


Q ss_pred             CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCcccc-ccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCC--
Q 048080           81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG-HIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNST--  156 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l--  156 (223)
                      ++++|++|++++|.+++..+..++.+++|++|++++|.+++ .+|..+..+++|+.|++++|.+++..+.. .....+  
T Consensus       102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  181 (606)
T 3vq2_A          102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ  181 (606)
T ss_dssp             TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred             CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence            99999999999999997777889999999999999999986 46889999999999999999998765532 223323  


Q ss_pred             --cceeecCCCC
Q 048080          157 --KGISLVGNEN  166 (223)
Q Consensus       157 --~~l~~~~n~~  166 (223)
                        ..+++.+|..
T Consensus       182 ~l~~L~l~~n~l  193 (606)
T 3vq2_A          182 VNLSLDMSLNPI  193 (606)
T ss_dssp             CCCEEECTTCCC
T ss_pred             ccceeeccCCCc
Confidence              3577777654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.85  E-value=1.1e-20  Score=163.95  Aligned_cols=161  Identities=24%  Similarity=0.241  Sum_probs=133.4

Q ss_pred             CCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccC--CcCCCCCCCCCeEeccCccccc-cCCccccCCC
Q 048080            7 GNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHF--PAEVGNLKHLVSLDISSNMFSG-EIPTTLGGCT   83 (223)
Q Consensus         7 ~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~   83 (223)
                      ..+++|++|++++|.+.+.+|.. +...+.|++|++++|.+++..  |..|..+++|++|++++|.+++ ..+..+..++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTT-CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccchhhh-hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            67889999999999998656654 455677899999999998643  4678899999999999999998 4444688899


Q ss_pred             CCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc-hhhhcCCcceeec
Q 048080           84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI-EAIFNSTKGISLV  162 (223)
Q Consensus        84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~l~~l~~~  162 (223)
                      +|+.|++++|++++..|..+.  ++|+.|++++|+++ .+|..+..+++|+.|++++|+++...+. ......++.++++
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~  505 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH  505 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECC
T ss_pred             cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEec
Confidence            999999999999877766554  68999999999999 6676677999999999999999953333 3556778899999


Q ss_pred             CCCCCCCCC
Q 048080          163 GNENLCGGS  171 (223)
Q Consensus       163 ~n~~~C~~~  171 (223)
                      +|++.|+|+
T Consensus       506 ~N~~~c~c~  514 (562)
T 3a79_B          506 DNPWDCTCP  514 (562)
T ss_dssp             SCCBCCCHH
T ss_pred             CCCcCCCcc
Confidence            999999984

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.85  E-value=1.9e-20  Score=158.10  Aligned_cols=160  Identities=20%  Similarity=0.254  Sum_probs=126.9

Q ss_pred             CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080            1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG   80 (223)
Q Consensus         1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   80 (223)
                      +||+.+.  ++++.|++++|++. .++...+...+.|++|+|++|.+....+..|.++++|++|++++|.++.+.+..|.
T Consensus        57 ~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  133 (440)
T 3zyj_A           57 EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV  133 (440)
T ss_dssp             SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC
T ss_pred             cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh
Confidence            4677666  68999999999998 77777778888999999999999988889999999999999999999988888899


Q ss_pred             CCCCCcEEEcccCcccccCCccccCCCCCCEEECCC-CccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcce
Q 048080           81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR-NNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGI  159 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l  159 (223)
                      .+++|+.|++++|.++...+..|..+++|++|++++ |.+....+..|..+++|+.|++++|.++ .+|.......++.+
T Consensus       134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L  212 (440)
T 3zyj_A          134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDEL  212 (440)
T ss_dssp             SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEE
T ss_pred             ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEE
Confidence            999999999999999977777788888888888887 4444444446777777777777777666 33333344445555


Q ss_pred             eecCC
Q 048080          160 SLVGN  164 (223)
Q Consensus       160 ~~~~n  164 (223)
                      ++++|
T Consensus       213 ~Ls~N  217 (440)
T 3zyj_A          213 DLSGN  217 (440)
T ss_dssp             ECTTS
T ss_pred             ECCCC
Confidence            55554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.85  E-value=1.4e-20  Score=139.85  Aligned_cols=135  Identities=20%  Similarity=0.230  Sum_probs=122.3

Q ss_pred             CCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEc
Q 048080           11 NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSM   90 (223)
Q Consensus        11 ~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L   90 (223)
                      ..+.+++++|++. .+|..++   +.++.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++
T Consensus         8 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            8 SGTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             ETTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence            4578999999998 8886553   57799999999999888888999999999999999999888888999999999999


Q ss_pred             ccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc
Q 048080           91 QDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI  149 (223)
Q Consensus        91 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~  149 (223)
                      ++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.+++++|++.|.++.
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  142 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  142 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence            99999988888889999999999999999977777788999999999999999998874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.85  E-value=3e-20  Score=154.36  Aligned_cols=66  Identities=24%  Similarity=0.293  Sum_probs=31.1

Q ss_pred             CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcccc
Q 048080            6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFS   72 (223)
Q Consensus         6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~   72 (223)
                      |+++++|++|++++|++. .+|..++...+.|++|++++|.+.+..+..|..+++|++|++++|.++
T Consensus       113 ~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          113 FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             TTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             hcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            444444444444444444 444444444444444444444444444444444444555555444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.84  E-value=1.6e-20  Score=152.80  Aligned_cols=160  Identities=19%  Similarity=0.185  Sum_probs=86.9

Q ss_pred             CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccc--cCCcccc
Q 048080            3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSG--EIPTTLG   80 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~   80 (223)
                      |.+|+++++|++|++++|.+. .+|..++   +.|++|++++|.+....+..|..+++|++|++++|.++.  ..+..|.
T Consensus        95 ~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  170 (332)
T 2ft3_A           95 EKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD  170 (332)
T ss_dssp             GGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC
T ss_pred             HhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccccc
Confidence            445566666666666666665 5554433   344555555555554444556666666666666666532  3333333


Q ss_pred             CC--------------------CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccC
Q 048080           81 GC--------------------TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSY  140 (223)
Q Consensus        81 ~l--------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~  140 (223)
                      .+                    ++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus       171 ~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  250 (332)
T 2ft3_A          171 GLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN  250 (332)
T ss_dssp             SCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred             CCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence            22                    2344444444444444445555666666666666666655555566666666666666


Q ss_pred             CcCcccCCchhhhcCCcceeecCCCC
Q 048080          141 NHFEGKVPIEAIFNSTKGISLVGNEN  166 (223)
Q Consensus       141 N~l~~~~~~~~~~~~l~~l~~~~n~~  166 (223)
                      |+++...+.......++.+++.+|..
T Consensus       251 N~l~~lp~~l~~l~~L~~L~l~~N~l  276 (332)
T 2ft3_A          251 NKLSRVPAGLPDLKLLQVVYLHTNNI  276 (332)
T ss_dssp             SCCCBCCTTGGGCTTCCEEECCSSCC
T ss_pred             CcCeecChhhhcCccCCEEECCCCCC
Confidence            66663222233444555566665544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=2.5e-20  Score=162.96  Aligned_cols=91  Identities=22%  Similarity=0.219  Sum_probs=44.2

Q ss_pred             CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCC
Q 048080            5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTS   84 (223)
Q Consensus         5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   84 (223)
                      +|+++++|++|++++|.+. .+|...+..++.|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++
T Consensus        94 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  172 (597)
T 3oja_B           94 AFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS  172 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred             HhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCc
Confidence            4555555555555555554 344444444444455555555555443344445555555555555555444444444444


Q ss_pred             CcEEEcccCccc
Q 048080           85 LEHLSMQDNSFT   96 (223)
Q Consensus        85 L~~L~L~~N~l~   96 (223)
                      |+.|++++|.++
T Consensus       173 L~~L~L~~N~l~  184 (597)
T 3oja_B          173 LQNLQLSSNRLT  184 (597)
T ss_dssp             CCEEECTTSCCS
T ss_pred             CcEEECcCCCCC
Confidence            444444444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.84  E-value=1.8e-20  Score=165.10  Aligned_cols=163  Identities=17%  Similarity=0.226  Sum_probs=139.7

Q ss_pred             CCCCCC-------CCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCC-------CCCeEecc
Q 048080            2 RPPSLG-------NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLK-------HLVSLDIS   67 (223)
Q Consensus         2 ip~~~~-------~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~-------~L~~L~l~   67 (223)
                      +|..|.       .+++|++|++++|.+. .+|..++...+.|++|++++|.++...+..+..+.       +|++|+++
T Consensus       418 ~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls  496 (636)
T 4eco_A          418 DGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR  496 (636)
T ss_dssp             TTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECC
T ss_pred             chhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECc
Confidence            466666       7789999999999998 89999888888889999999999954444554433       99999999


Q ss_pred             CccccccCCcccc--CCCCCcEEEcccCcccccCCccccCCCCCCEEEC------CCCccccccchhhhCCCCCCEEecc
Q 048080           68 SNMFSGEIPTTLG--GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDL------SRNNLSGHIPQYLENLSFLSFLNLS  139 (223)
Q Consensus        68 ~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L------~~N~l~~~~p~~~~~l~~L~~l~l~  139 (223)
                      +|.++ .+|..+.  .+++|+.|++++|++++ +|..+..+++|++|++      ++|++.+.+|..+..+++|+.|+++
T Consensus       497 ~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls  574 (636)
T 4eco_A          497 FNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG  574 (636)
T ss_dssp             SSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred             CCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence            99999 6777776  99999999999999997 7888999999999999      5688888999999999999999999


Q ss_pred             CCcCcccCCchhhhcCCcceeecCCCCCCC
Q 048080          140 YNHFEGKVPIEAIFNSTKGISLVGNENLCG  169 (223)
Q Consensus       140 ~N~l~~~~~~~~~~~~l~~l~~~~n~~~C~  169 (223)
                      +|++ +.+|.. ....++.+++++|+..|-
T Consensus       575 ~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          575 SNDI-RKVNEK-ITPNISVLDIKDNPNISI  602 (636)
T ss_dssp             SSCC-CBCCSC-CCTTCCEEECCSCTTCEE
T ss_pred             CCcC-CccCHh-HhCcCCEEECcCCCCccc
Confidence            9999 566754 347899999999998774

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.84  E-value=1.3e-21  Score=158.11  Aligned_cols=162  Identities=21%  Similarity=0.192  Sum_probs=85.4

Q ss_pred             CCCCC--CCCCCCCeeecccCccccCCChhhhhc----cCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcccccc-
Q 048080            2 RPPSL--GNCQNLILLTTCKNKLSGTVPRQLLRI----ITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGE-   74 (223)
Q Consensus         2 ip~~~--~~l~~L~~L~l~~n~i~~~~p~~~~~~----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-   74 (223)
                      +|..+  +++++|++|++++|++. .+|..+...    .+.|++|++++|.+.+..+..|..+++|++|++++|.+.+. 
T Consensus       111 ~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  189 (312)
T 1wwl_A          111 APPPLLEATGPDLNILNLRNVSWA-TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER  189 (312)
T ss_dssp             CCCCSSSCCSCCCSEEEEESCBCS-SSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH
T ss_pred             hHHHHHHhcCCCccEEEccCCCCc-chhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch
Confidence            34443  55666666666666665 334333222    14556666666666655555666666666666666655432 


Q ss_pred             -CCcc--ccCCCCCcEEEcccCcccc---cCCccccCCCCCCEEECCCCccccccc-hhhhCCCCCCEEeccCCcCcccC
Q 048080           75 -IPTT--LGGCTSLEHLSMQDNSFTG---SIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFEGKV  147 (223)
Q Consensus        75 -~~~~--~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~~  147 (223)
                       .+..  +..+++|++|++++|++++   .....+..+++|++|++++|.+++..| ..+..+++|+.|++++|.++ .+
T Consensus       190 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~i  268 (312)
T 1wwl_A          190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QV  268 (312)
T ss_dssp             HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SC
T ss_pred             HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hh
Confidence             1222  2555666666666666552   111223455566666666666665443 33444556666666666665 33


Q ss_pred             CchhhhcCCcceeecCCCC
Q 048080          148 PIEAIFNSTKGISLVGNEN  166 (223)
Q Consensus       148 ~~~~~~~~l~~l~~~~n~~  166 (223)
                      |.... ..++.+++++|..
T Consensus       269 p~~~~-~~L~~L~Ls~N~l  286 (312)
T 1wwl_A          269 PKGLP-AKLSVLDLSYNRL  286 (312)
T ss_dssp             CSSCC-SEEEEEECCSSCC
T ss_pred             hhhcc-CCceEEECCCCCC
Confidence            33222 4555566666543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.84  E-value=2.6e-21  Score=170.43  Aligned_cols=97  Identities=25%  Similarity=0.422  Sum_probs=51.7

Q ss_pred             CCcCCC--CCCCCCeEeccCccccccCCccccCCCCCcEEEcccCc-ccc-cCCccccCC------CCCCEEECCCCccc
Q 048080           51 FPAEVG--NLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNS-FTG-SIPSTLSSL------KSITELDLSRNNLS  120 (223)
Q Consensus        51 ~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~-~~~~~~~~l------~~L~~L~L~~N~l~  120 (223)
                      +|..+.  .+++|++|++++|.+.+..|..|.++++|++|++++|+ +++ .+|..+..+      ++|++|++++|.++
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            555555  55555555555555555555555555555555555555 554 444444443      55555555555555


Q ss_pred             cccch--hhhCCCCCCEEeccCCcCcccCC
Q 048080          121 GHIPQ--YLENLSFLSFLNLSYNHFEGKVP  148 (223)
Q Consensus       121 ~~~p~--~~~~l~~L~~l~l~~N~l~~~~~  148 (223)
                       .+|.  .+..+++|+.|++++|.+.|.+|
T Consensus       319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP  347 (636)
T ss_dssp             -SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred             -ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence             4444  45555555555555555554444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.84  E-value=1.4e-20  Score=141.84  Aligned_cols=166  Identities=20%  Similarity=0.257  Sum_probs=130.9

Q ss_pred             CCCCCCCCCCCCCeeecccCccccCCCh-hhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccc
Q 048080            1 NRPPSLGNCQNLILLTTCKNKLSGTVPR-QLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTL   79 (223)
Q Consensus         1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~-~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~   79 (223)
                      +||..+..  +|++|++++|.+. .++. ..+..++.|++|++++|.+++..|..|..+++|++|++++|.+++..+..|
T Consensus        22 ~ip~~~~~--~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~   98 (192)
T 1w8a_A           22 EIPRDIPL--HTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF   98 (192)
T ss_dssp             SCCSCCCT--TCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSS
T ss_pred             cCccCCCC--CCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHh
Confidence            46776654  8999999999998 6664 467788889999999999999989999999999999999999999999999


Q ss_pred             cCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchh-hhCCCCCCEEeccCCcCcccCCchhhhcCCcc
Q 048080           80 GGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQY-LENLSFLSFLNLSYNHFEGKVPIEAIFNSTKG  158 (223)
Q Consensus        80 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~  158 (223)
                      .++++|++|++++|++++..|..|..+++|++|++++|.+++..+-. +..  .++...+..+...|..|..  +....-
T Consensus        99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~P~~--l~~~~l  174 (192)
T 1w8a_A           99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGAPSK--VRDVQI  174 (192)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCSSTT--TTTSBG
T ss_pred             cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCCCChH--HcCCCh
Confidence            99999999999999999999999999999999999999999765522 111  1122234455566555532  334444


Q ss_pred             eeecCCCCCCCCCCC
Q 048080          159 ISLVGNENLCGGSRK  173 (223)
Q Consensus       159 l~~~~n~~~C~~~~~  173 (223)
                      .++..+...|..+..
T Consensus       175 ~~l~~~~~~C~~~~~  189 (192)
T 1w8a_A          175 KDLPHSEFKCSSENS  189 (192)
T ss_dssp             GGSCTTTCCCCCC--
T ss_pred             hhCcHhhcCcCCCCC
Confidence            566677777876543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=6.7e-21  Score=148.15  Aligned_cols=158  Identities=15%  Similarity=0.114  Sum_probs=73.5

Q ss_pred             CCCCCCCCCeeecccCc-cccCCChhhhhccCCceEEEccC-CcccccCCcCCCCCCCCCeEeccCccccccCCccccCC
Q 048080            5 SLGNCQNLILLTTCKNK-LSGTVPRQLLRIITRSVLLDLFD-NLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC   82 (223)
Q Consensus         5 ~~~~l~~L~~L~l~~n~-i~~~~p~~~~~~~~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l   82 (223)
                      +|+++++|++|++++|+ +. .++...|...+.|++|++++ |.++...+..|.++++|++|++++|.+++ .|. |..+
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l  126 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKV  126 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTC
T ss_pred             HccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccc
Confidence            44445555555555554 43 44444444444445555554 55554444444555555555555555543 232 4444


Q ss_pred             CCCc---EEEcccC-cccccCCccccCCCCCC-EEECCCCccccccchhhhCCCCCCEEeccCCc-CcccCCch-hhh-c
Q 048080           83 TSLE---HLSMQDN-SFTGSIPSTLSSLKSIT-ELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH-FEGKVPIE-AIF-N  154 (223)
Q Consensus        83 ~~L~---~L~L~~N-~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~-l~~~~~~~-~~~-~  154 (223)
                      ++|+   .|++++| .+++..+..|..+++|+ .|++++|.++...+..|.. ++|+.|++++|+ ++...+.. ... .
T Consensus       127 ~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~  205 (239)
T 2xwt_C          127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYS  205 (239)
T ss_dssp             CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSB
T ss_pred             cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhcccc
Confidence            4444   5555555 55544444455555555 5555555555222222322 455555555553 44322211 122 3


Q ss_pred             CCcceeecCCCC
Q 048080          155 STKGISLVGNEN  166 (223)
Q Consensus       155 ~l~~l~~~~n~~  166 (223)
                      .++.+++++|..
T Consensus       206 ~L~~L~l~~N~l  217 (239)
T 2xwt_C          206 GPSLLDVSQTSV  217 (239)
T ss_dssp             CCSEEECTTCCC
T ss_pred             CCcEEECCCCcc
Confidence            455555555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.84  E-value=4.2e-20  Score=153.47  Aligned_cols=154  Identities=18%  Similarity=0.154  Sum_probs=130.1

Q ss_pred             CCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcE
Q 048080            8 NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEH   87 (223)
Q Consensus         8 ~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   87 (223)
                      .++++++|++++|.+. .+|..++...+.|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            4578999999999998 899988888888999999999999888889999999999999999999888888999999999


Q ss_pred             EEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCC
Q 048080           88 LSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN  164 (223)
Q Consensus        88 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n  164 (223)
                      |++++|.++...+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++. + ...+..+..+++.+|
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~-~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D-LSLIPSLFHANVSYN  196 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C-GGGCTTCSEEECCSS
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c-cccccccceeecccc
Confidence            99999999966666678999999999999999988888899999999999999998853 2 223344444444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=7.7e-21  Score=155.97  Aligned_cols=142  Identities=19%  Similarity=0.198  Sum_probs=87.5

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG   81 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   81 (223)
                      ||..+.  ++|++|++++|.+. .+|...+...+.|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..
T Consensus        46 iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  122 (353)
T 2z80_A           46 IPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP  122 (353)
T ss_dssp             CCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTT
T ss_pred             cccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCC
Confidence            455444  36666777776666 555555555566666777666666666666666666666666666666544444666


Q ss_pred             CCCCcEEEcccCcccccCC-ccccCCCCCCEEECCCC-ccccccchhhhCCCCCCEEeccCCcCccc
Q 048080           82 CTSLEHLSMQDNSFTGSIP-STLSSLKSITELDLSRN-NLSGHIPQYLENLSFLSFLNLSYNHFEGK  146 (223)
Q Consensus        82 l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~l~l~~N~l~~~  146 (223)
                      +++|++|++++|++++..+ ..|..+++|++|++++| .+.+..+..+..+++|+.|++++|.+.+.
T Consensus       123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  189 (353)
T 2z80_A          123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY  189 (353)
T ss_dssp             CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence            6666666666666664333 35666666666666666 35544455566666666666666666544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.84  E-value=2.5e-20  Score=162.84  Aligned_cols=161  Identities=19%  Similarity=0.144  Sum_probs=102.7

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG   81 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   81 (223)
                      ||..+.  .++++|++++|.++ .+++..+...+.|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|.+
T Consensus        27 iP~~l~--~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  103 (606)
T 3t6q_A           27 IPGTLP--NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG  103 (606)
T ss_dssp             CCTTSC--TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred             CcCCCC--CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence            555554  35677777777776 554445555666677777777777666677777777777777777777666667777


Q ss_pred             CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCc--c
Q 048080           82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTK--G  158 (223)
Q Consensus        82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~--~  158 (223)
                      +++|++|++++|.+++..+..+..+++|++|++++|.+++.....+..+++|+.|++++|.+++..+.. .....++  .
T Consensus       104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~  183 (606)
T 3t6q_A          104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS  183 (606)
T ss_dssp             CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEE
T ss_pred             cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeE
Confidence            777777777777777655666677777777777777776544334444667777777777766543321 2334444  4


Q ss_pred             eeecCCC
Q 048080          159 ISLVGNE  165 (223)
Q Consensus       159 l~~~~n~  165 (223)
                      +++.+|.
T Consensus       184 L~l~~n~  190 (606)
T 3t6q_A          184 LNLNGND  190 (606)
T ss_dssp             EECTTCC
T ss_pred             EecCCCc
Confidence            5555554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.84  E-value=3.4e-20  Score=150.75  Aligned_cols=160  Identities=20%  Similarity=0.212  Sum_probs=80.6

Q ss_pred             CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccc--cCCcccc
Q 048080            3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSG--EIPTTLG   80 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~   80 (223)
                      |.+|+++++|++|++++|.+. .+|..++   +.|++|++++|.+.+..+..|..+++|++|++++|.+..  ..+..|.
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  168 (330)
T 1xku_A           93 PGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ  168 (330)
T ss_dssp             TTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG
T ss_pred             HHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc
Confidence            455666666666666666555 4544332   233444444444443333334445555555555555432  3333344


Q ss_pred             CCCC---------------------CcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEecc
Q 048080           81 GCTS---------------------LEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLS  139 (223)
Q Consensus        81 ~l~~---------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~  139 (223)
                      .+++                     |+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|+++
T Consensus       169 ~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  248 (330)
T 1xku_A          169 GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN  248 (330)
T ss_dssp             GCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred             CCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECC
Confidence            4333                     4444444444444444555555666666666666665555555566666666666


Q ss_pred             CCcCcccCCchhhhcCCcceeecCCCC
Q 048080          140 YNHFEGKVPIEAIFNSTKGISLVGNEN  166 (223)
Q Consensus       140 ~N~l~~~~~~~~~~~~l~~l~~~~n~~  166 (223)
                      +|++............++.+++.+|..
T Consensus       249 ~N~l~~lp~~l~~l~~L~~L~l~~N~i  275 (330)
T 1xku_A          249 NNKLVKVPGGLADHKYIQVVYLHNNNI  275 (330)
T ss_dssp             SSCCSSCCTTTTTCSSCCEEECCSSCC
T ss_pred             CCcCccCChhhccCCCcCEEECCCCcC
Confidence            666552222223344455555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.84  E-value=8.9e-21  Score=153.21  Aligned_cols=159  Identities=19%  Similarity=0.112  Sum_probs=134.6

Q ss_pred             CCCCCCeeecccCccccCCChhhh-hccCCceEEEccCCcccccCCcCCCCC-----CCCCeEeccCccccccCCccccC
Q 048080            8 NCQNLILLTTCKNKLSGTVPRQLL-RIITRSVLLDLFDNLLSGHFPAEVGNL-----KHLVSLDISSNMFSGEIPTTLGG   81 (223)
Q Consensus         8 ~l~~L~~L~l~~n~i~~~~p~~~~-~~~~~l~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~   81 (223)
                      ++++|++|++++|++.+.+|..++ ...+.|++|++++|.+++. |..+..+     ++|++|++++|.+++..+..|..
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            789999999999999988898764 6788889999999999977 7777766     99999999999999988899999


Q ss_pred             CCCCcEEEcccCccccc--CCccc--cCCCCCCEEECCCCcccc---ccchhhhCCCCCCEEeccCCcCcccCCc--hhh
Q 048080           82 CTSLEHLSMQDNSFTGS--IPSTL--SSLKSITELDLSRNNLSG---HIPQYLENLSFLSFLNLSYNHFEGKVPI--EAI  152 (223)
Q Consensus        82 l~~L~~L~L~~N~l~~~--~~~~~--~~l~~L~~L~L~~N~l~~---~~p~~~~~l~~L~~l~l~~N~l~~~~~~--~~~  152 (223)
                      +++|++|++++|++.+.  .+..+  ..+++|++|++++|.+++   .....+..+++|+.|++++|.+.+..|.  ...
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence            99999999999998765  23334  889999999999999983   2234556889999999999999986643  234


Q ss_pred             hcCCcceeecCCCCC
Q 048080          153 FNSTKGISLVGNENL  167 (223)
Q Consensus       153 ~~~l~~l~~~~n~~~  167 (223)
                      ...++.+++++|...
T Consensus       252 l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLK  266 (312)
T ss_dssp             CTTCCEEECTTSCCS
T ss_pred             cCCCCEEECCCCccC
Confidence            578899999998754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=1.1e-20  Score=146.84  Aligned_cols=158  Identities=17%  Similarity=0.164  Sum_probs=134.1

Q ss_pred             CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCc-ccccCCcCCCCCCCCCeEeccC-ccccccCCcc
Q 048080            1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNL-LSGHFPAEVGNLKHLVSLDISS-NMFSGEIPTT   78 (223)
Q Consensus         1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~   78 (223)
                      +||. +.  ++|++|++++|+++ .+|...+...+.|++|++++|. ++...+..|.++++|++|++++ |.++++.+..
T Consensus        25 ~ip~-~~--~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~  100 (239)
T 2xwt_C           25 RIPS-LP--PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA  100 (239)
T ss_dssp             SCCC-CC--TTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred             ccCC-CC--CcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence            3666 44  48999999999998 8888778888889999999997 8878888899999999999998 9999888888


Q ss_pred             ccCCCCCcEEEcccCcccccCCccccCCCCCC---EEECCCC-ccccccchhhhCCCCCC-EEeccCCcCcccCCch-hh
Q 048080           79 LGGCTSLEHLSMQDNSFTGSIPSTLSSLKSIT---ELDLSRN-NLSGHIPQYLENLSFLS-FLNLSYNHFEGKVPIE-AI  152 (223)
Q Consensus        79 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~p~~~~~l~~L~-~l~l~~N~l~~~~~~~-~~  152 (223)
                      |.++++|+.|++++|.+++ +|+ |..+++|+   +|++++| .+++..+..|..+++|+ .+++++|.++ .+|.. ..
T Consensus       101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~  177 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN  177 (239)
T ss_dssp             EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTT
T ss_pred             hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcC
Confidence            9999999999999999995 666 88888888   9999999 99988778899999999 9999999998 44432 22


Q ss_pred             hcCCcceeecCCC
Q 048080          153 FNSTKGISLVGNE  165 (223)
Q Consensus       153 ~~~l~~l~~~~n~  165 (223)
                      ...++.+++.+|+
T Consensus       178 ~~~L~~L~L~~n~  190 (239)
T 2xwt_C          178 GTKLDAVYLNKNK  190 (239)
T ss_dssp             TCEEEEEECTTCT
T ss_pred             CCCCCEEEcCCCC
Confidence            2567788888885

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.83  E-value=3.2e-20  Score=159.47  Aligned_cols=160  Identities=28%  Similarity=0.258  Sum_probs=134.5

Q ss_pred             CCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccc--cCCcCCCCCCCCCeEeccCccccccCCc-cccCCC
Q 048080            7 GNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSG--HFPAEVGNLKHLVSLDISSNMFSGEIPT-TLGGCT   83 (223)
Q Consensus         7 ~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~   83 (223)
                      ..+++|++|++++|++.+.+|..+ ...+.|++|++++|.+.+  ..|..+..+++|++|++++|.+++..|. .+..++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence            688999999999999986667654 556778999999999986  4456788999999999999999984554 588899


Q ss_pred             CCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc--hhhhcCCcceee
Q 048080           84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI--EAIFNSTKGISL  161 (223)
Q Consensus        84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~--~~~~~~l~~l~~  161 (223)
                      +|+.|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|+++. +|.  ......++.+++
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l  475 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWL  475 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred             cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEEC
Confidence            999999999999887776664  68999999999999 777777799999999999999995 443  345677889999


Q ss_pred             cCCCCCCCCC
Q 048080          162 VGNENLCGGS  171 (223)
Q Consensus       162 ~~n~~~C~~~  171 (223)
                      ++|++.|+|.
T Consensus       476 ~~N~~~c~c~  485 (520)
T 2z7x_B          476 HTNPWDCSCP  485 (520)
T ss_dssp             CSSCBCCCHH
T ss_pred             cCCCCcccCC
Confidence            9999999874

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.83  E-value=4e-20  Score=139.79  Aligned_cols=153  Identities=18%  Similarity=0.209  Sum_probs=131.4

Q ss_pred             CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCC
Q 048080            6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSL   85 (223)
Q Consensus         6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   85 (223)
                      .+.+++|+.|++++|.+. .+| . +...+.|++|++++|.+..  +..+..+++|++|++++|.+++..+..+..+++|
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             hhhcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence            356789999999999998 888 3 4566788999999997763  3478899999999999999998888999999999


Q ss_pred             cEEEcccCcccccCCccccCCCCCCEEECCCCc-cccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCC
Q 048080           86 EHLSMQDNSFTGSIPSTLSSLKSITELDLSRNN-LSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN  164 (223)
Q Consensus        86 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n  164 (223)
                      ++|++++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|++++. +....+..++.+++.+|
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-TTGGGCSSCCEEEECBC
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-HHhccCCCCCEEEeeCc
Confidence            999999999998788889999999999999998 66 555 689999999999999999864 34566788999999998


Q ss_pred             CC
Q 048080          165 EN  166 (223)
Q Consensus       165 ~~  166 (223)
                      +.
T Consensus       192 ~i  193 (197)
T 4ezg_A          192 TI  193 (197)
T ss_dssp             --
T ss_pred             cc
Confidence            74

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=7.7e-21  Score=162.49  Aligned_cols=130  Identities=21%  Similarity=0.182  Sum_probs=74.8

Q ss_pred             eEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc-CCCCCcEEEcccCcccccCCccccCCCCCCEEECCC
Q 048080           38 VLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG-GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR  116 (223)
Q Consensus        38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  116 (223)
                      +.|++++|.+++..|..|..+++|++|++++|.+++..|..+. .+++|+.|+|++|.+++..+  +..+++|+.|+|++
T Consensus       123 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~  200 (487)
T 3oja_A          123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSS  200 (487)
T ss_dssp             EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCS
T ss_pred             CEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCC
Confidence            3334444444444444555555556666666655555555543 45556666666665554422  23466677777777


Q ss_pred             CccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCCCCCCC
Q 048080          117 NNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG  170 (223)
Q Consensus       117 N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~~~C~~  170 (223)
                      |.+++..| .+..+++|+.|++++|.+++..+.......+..+++++|++.|++
T Consensus       201 N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          201 NKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             SCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             CCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence            77775444 366777777777777777753333334456667777777777653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=9.9e-20  Score=159.22  Aligned_cols=154  Identities=18%  Similarity=0.149  Sum_probs=129.8

Q ss_pred             CCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcE
Q 048080            8 NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEH   87 (223)
Q Consensus         8 ~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   87 (223)
                      .+++++.+++++|.+. .+|..++...+.|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++
T Consensus        49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            4578899999999997 899888888888899999999999888889999999999999999999888888999999999


Q ss_pred             EEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCC
Q 048080           88 LSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN  164 (223)
Q Consensus        88 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n  164 (223)
                      |+|++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|+.|++++|.+++..  ...+..+..+++.+|
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN  202 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSS
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccC
Confidence            999999999777777889999999999999999888888999999999999999988642  223344444444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.82  E-value=1.4e-19  Score=147.32  Aligned_cols=163  Identities=24%  Similarity=0.280  Sum_probs=127.7

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccc--cCCcCCCCC--------------------C
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSG--HFPAEVGNL--------------------K   59 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~--~~~~~~~~l--------------------~   59 (223)
                      +|..+.  ++|++|++++|.+. .+|...+...+.|++|++++|.+..  ..+..|..+                    +
T Consensus       117 l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~  193 (332)
T 2ft3_A          117 IPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE  193 (332)
T ss_dssp             CCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCS
T ss_pred             cCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccC
Confidence            455544  67777777777776 6666666666777777777777742  444444433                    5


Q ss_pred             CCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEecc
Q 048080           60 HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLS  139 (223)
Q Consensus        60 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~  139 (223)
                      +|++|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus       194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence            7888888888888887888999999999999999999888888999999999999999999 778889999999999999


Q ss_pred             CCcCcccCCchh-------hhcCCcceeecCCCCCC
Q 048080          140 YNHFEGKVPIEA-------IFNSTKGISLVGNENLC  168 (223)
Q Consensus       140 ~N~l~~~~~~~~-------~~~~l~~l~~~~n~~~C  168 (223)
                      +|++++..+...       ....+..+++.+|++.+
T Consensus       273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~  308 (332)
T 2ft3_A          273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY  308 (332)
T ss_dssp             SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred             CCCCCccChhHccccccccccccccceEeecCcccc
Confidence            999986443221       13456789999999864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.82  E-value=8.1e-21  Score=171.66  Aligned_cols=160  Identities=18%  Similarity=0.278  Sum_probs=100.0

Q ss_pred             CCCCCCCCCCCCeeecccCcccc-----------------CCChhh-hhccCCceEEEccCCcccccCCcCCCCCCCCCe
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSG-----------------TVPRQL-LRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVS   63 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~-----------------~~p~~~-~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~   63 (223)
                      ||++|+++++|++|++++|.+.+                 .+|+.+ |..++.|++|+|++|.+.+..|..|..+++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            67777777777777777777775                 266665 345566677777777777777777777777777


Q ss_pred             EeccCcc-ccc-cCCccccCC-------CCCcEEEcccCcccccCCc--cccCCCCCCEEECCCCccccccchhhhCCCC
Q 048080           64 LDISSNM-FSG-EIPTTLGGC-------TSLEHLSMQDNSFTGSIPS--TLSSLKSITELDLSRNNLSGHIPQYLENLSF  132 (223)
Q Consensus        64 L~l~~n~-l~~-~~~~~~~~l-------~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  132 (223)
                      |++++|. +++ .+|..+..+       ++|+.|++++|.++ .+|.  .+..+++|+.|+|++|.++ .+| .|..+++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~  596 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK  596 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence            7777776 665 455444333       36666666666666 5555  5666666666666666666 455 5556666


Q ss_pred             CCEEeccCCcCcccCCc-hhhhcC-CcceeecCCC
Q 048080          133 LSFLNLSYNHFEGKVPI-EAIFNS-TKGISLVGNE  165 (223)
Q Consensus       133 L~~l~l~~N~l~~~~~~-~~~~~~-l~~l~~~~n~  165 (223)
                      |+.|++++|.+. .+|. ...... ++.+++++|.
T Consensus       597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred             ceEEECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence            666666666655 3332 122333 5555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.82  E-value=1.2e-19  Score=137.21  Aligned_cols=136  Identities=16%  Similarity=0.187  Sum_probs=117.7

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG   81 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   81 (223)
                      +| .+..+++|++|++++|.+. .++  .+...+.|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..
T Consensus        59 l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~  134 (197)
T 4ezg_A           59 LT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT  134 (197)
T ss_dssp             CT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT
T ss_pred             hH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh
Confidence            46 6889999999999999886 554  3556788899999999999888889999999999999999999888889999


Q ss_pred             CCCCcEEEcccCc-ccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcc
Q 048080           82 CTSLEHLSMQDNS-FTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG  145 (223)
Q Consensus        82 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~  145 (223)
                      +++|+.|++++|. ++ .++ .+..+++|++|++++|.+++. + .+..+++|+.|++++|++.+
T Consensus       135 l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          135 LPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             CCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            9999999999998 66 555 589999999999999999964 3 68999999999999999864

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.82  E-value=1.8e-19  Score=146.47  Aligned_cols=162  Identities=18%  Similarity=0.254  Sum_probs=134.3

Q ss_pred             CCCCCCCCCCeeecccCcccc-CCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCC
Q 048080            4 PSLGNCQNLILLTTCKNKLSG-TVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC   82 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~-~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l   82 (223)
                      ..|.++++|++|++++|.+.. .+....+...+.|++|++++|.+.. .|..+.  ++|++|++++|.+++..+..|..+
T Consensus       139 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l  215 (330)
T 1xku_A          139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGL  215 (330)
T ss_dssp             HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTC
T ss_pred             hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCC
Confidence            357889999999999999962 1444556777888999999999984 454443  799999999999998888999999


Q ss_pred             CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchh-------hhcC
Q 048080           83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEA-------IFNS  155 (223)
Q Consensus        83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~-------~~~~  155 (223)
                      ++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++..+...       ....
T Consensus       216 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~  294 (330)
T 1xku_A          216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS  294 (330)
T ss_dssp             TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred             CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccc
Confidence            99999999999999888888999999999999999999 778889999999999999999986443221       1345


Q ss_pred             CcceeecCCCCCCC
Q 048080          156 TKGISLVGNENLCG  169 (223)
Q Consensus       156 l~~l~~~~n~~~C~  169 (223)
                      +..+++.+||..+.
T Consensus       295 l~~l~l~~N~~~~~  308 (330)
T 1xku_A          295 YSGVSLFSNPVQYW  308 (330)
T ss_dssp             CSEEECCSSSSCGG
T ss_pred             ccceEeecCccccc
Confidence            67789999988653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.81  E-value=3.8e-20  Score=159.89  Aligned_cols=145  Identities=19%  Similarity=0.187  Sum_probs=108.6

Q ss_pred             CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080            1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG   80 (223)
Q Consensus         1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   80 (223)
                      +||+.+.  ++|++|++++|.+. .++...+...+.|++|++++|.+.+..|..|..+++|++|++++|.+++..+..|.
T Consensus        19 ~ip~~~~--~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~   95 (549)
T 2z81_A           19 SIPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG   95 (549)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred             cccccCC--CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence            3666654  67888888888887 55444556667778888888888877778888888888888888888877776788


Q ss_pred             CCCCCcEEEcccCccccc-CCccccCCCCCCEEECCCCcccccc-chhhhCCCCCCEEeccCCcCcccCC
Q 048080           81 GCTSLEHLSMQDNSFTGS-IPSTLSSLKSITELDLSRNNLSGHI-PQYLENLSFLSFLNLSYNHFEGKVP  148 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~l~l~~N~l~~~~~  148 (223)
                      .+++|++|++++|.+++. .|..+..+++|++|++++|.+.+.+ +..+..+++|+.|++++|.+.+..|
T Consensus        96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  165 (549)
T 2z81_A           96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS  165 (549)
T ss_dssp             TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence            888888888888888753 4566778888888888888743344 3567778888888888888776544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.81  E-value=1.2e-19  Score=155.95  Aligned_cols=168  Identities=22%  Similarity=0.263  Sum_probs=134.4

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCCh--hhhhccCCceEEEccCCcccccCC-cCCCCCCCCCeEeccCccccccCCcc
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPR--QLLRIITRSVLLDLFDNLLSGHFP-AEVGNLKHLVSLDISSNMFSGEIPTT   78 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~--~~~~~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~   78 (223)
                      +|.+++++++|++|++++|++. .++.  ..+...+.|++|++++|.+.+..| ..|..+++|++|++++|.+++..|..
T Consensus       340 ~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  418 (520)
T 2z7x_B          340 VFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC  418 (520)
T ss_dssp             TTTTCCCCSSCCEEECCSSCCC-BHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS
T ss_pred             hhhhhccCCCCCEEEccCCccC-ccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh
Confidence            6889999999999999999998 5443  345667888999999999998444 56889999999999999998877766


Q ss_pred             ccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhh-hcCCc
Q 048080           79 LGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAI-FNSTK  157 (223)
Q Consensus        79 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~-~~~l~  157 (223)
                      +.  ++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.+++++|++.|.|+..+. ...+.
T Consensus       419 l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~  495 (520)
T 2z7x_B          419 LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN  495 (520)
T ss_dssp             CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHH
T ss_pred             hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHHH
Confidence            54  79999999999999 7787777999999999999999954444589999999999999999999886544 22221


Q ss_pred             ce-eecCCCCCCCCCCC
Q 048080          158 GI-SLVGNENLCGGSRK  173 (223)
Q Consensus       158 ~l-~~~~n~~~C~~~~~  173 (223)
                      .. ........|..+..
T Consensus       496 ~~~~~~~~~~~C~~p~~  512 (520)
T 2z7x_B          496 KNSQKEQGSAKCSGSGK  512 (520)
T ss_dssp             HTTTTEESCCBBTTTCC
T ss_pred             hccccCCCCCCcCCccc
Confidence            10 11234457876643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.81  E-value=3.1e-20  Score=167.84  Aligned_cols=139  Identities=17%  Similarity=0.213  Sum_probs=119.9

Q ss_pred             CChhhhhccCCceEEEccCCcccc-----------------cCCcCCC--CCCCCCeEeccCccccccCCccccCCCCCc
Q 048080           26 VPRQLLRIITRSVLLDLFDNLLSG-----------------HFPAEVG--NLKHLVSLDISSNMFSGEIPTTLGGCTSLE   86 (223)
Q Consensus        26 ~p~~~~~~~~~l~~L~L~~n~l~~-----------------~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~   86 (223)
                      +|..+ ..++.|++|+|++|.+++                 .+|..+.  .+++|++|++++|.+.+..|..|.++++|+
T Consensus       440 IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~  518 (876)
T 4ecn_A          440 ISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ  518 (876)
T ss_dssp             ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred             hhHHH-hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence            66654 456777999999999998                 3888877  999999999999999999999999999999


Q ss_pred             EEEcccCc-ccc-cCCccccCCC-------CCCEEECCCCccccccch--hhhCCCCCCEEeccCCcCcccCCchhhhcC
Q 048080           87 HLSMQDNS-FTG-SIPSTLSSLK-------SITELDLSRNNLSGHIPQ--YLENLSFLSFLNLSYNHFEGKVPIEAIFNS  155 (223)
Q Consensus        87 ~L~L~~N~-l~~-~~~~~~~~l~-------~L~~L~L~~N~l~~~~p~--~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~  155 (223)
                      .|++++|+ +++ .+|..+..++       +|++|++++|.++ .+|.  .+..+++|+.|++++|.+. .+|.......
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~  596 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVK  596 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSE
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCc
Confidence            99999998 988 7787665554       9999999999999 7887  8999999999999999999 7775566677


Q ss_pred             CcceeecCCCCC
Q 048080          156 TKGISLVGNENL  167 (223)
Q Consensus       156 l~~l~~~~n~~~  167 (223)
                      ++.+++++|...
T Consensus       597 L~~L~Ls~N~l~  608 (876)
T 4ecn_A          597 LTDLKLDYNQIE  608 (876)
T ss_dssp             ESEEECCSSCCS
T ss_pred             ceEEECcCCccc
Confidence            888999888654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=1.7e-19  Score=145.52  Aligned_cols=151  Identities=25%  Similarity=0.315  Sum_probs=75.2

Q ss_pred             CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCC
Q 048080            5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTS   84 (223)
Q Consensus         5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   84 (223)
                      ++..+++|++|++++|.+. .++.  +...+.|++|++++|.+.+.  ..+..+++|++|++++|.+++..  .+..+++
T Consensus        58 ~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~  130 (308)
T 1h6u_A           58 GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSN  130 (308)
T ss_dssp             TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTT
T ss_pred             hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCch--hhcCCCC
Confidence            4555666666666666665 4444  34445556666666655532  23455555555555555554321  1444455


Q ss_pred             CcEEEcccCcccccCC---------------------ccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcC
Q 048080           85 LEHLSMQDNSFTGSIP---------------------STLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF  143 (223)
Q Consensus        85 L~~L~L~~N~l~~~~~---------------------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l  143 (223)
                      |+.|++++|.+++..+                     . +..+++|+.|++++|.+++..+  +..+++|+.|++++|++
T Consensus       131 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l  207 (308)
T 1h6u_A          131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI  207 (308)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCC
T ss_pred             CCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCcc
Confidence            5555555554443222                     1 4444555555555555543322  44555555555555555


Q ss_pred             cccCCchhhhcCCcceeecCCCC
Q 048080          144 EGKVPIEAIFNSTKGISLVGNEN  166 (223)
Q Consensus       144 ~~~~~~~~~~~~l~~l~~~~n~~  166 (223)
                      .+..+ ......++.+++.+|+.
T Consensus       208 ~~~~~-l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          208 SDVSP-LANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             CBCGG-GTTCTTCCEEEEEEEEE
T ss_pred             Ccccc-ccCCCCCCEEEccCCee
Confidence            54332 23344455555555554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.81  E-value=1.9e-19  Score=132.55  Aligned_cols=135  Identities=18%  Similarity=0.180  Sum_probs=115.1

Q ss_pred             CCCCCCeeecccCccc-cCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCc
Q 048080            8 NCQNLILLTTCKNKLS-GTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLE   86 (223)
Q Consensus         8 ~l~~L~~L~l~~n~i~-~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~   86 (223)
                      ..++|+.|++++|.+. +.+|.. +...+.|++|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            3478999999999997 677765 45567789999999999865  7788999999999999999987888888899999


Q ss_pred             EEEcccCcccccCC-ccccCCCCCCEEECCCCccccccc---hhhhCCCCCCEEeccCCcCcc
Q 048080           87 HLSMQDNSFTGSIP-STLSSLKSITELDLSRNNLSGHIP---QYLENLSFLSFLNLSYNHFEG  145 (223)
Q Consensus        87 ~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~l~l~~N~l~~  145 (223)
                      .|++++|.+++... ..+..+++|++|++++|.+++..+   ..+..+++|+.|++++|.+..
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            99999999986432 678899999999999999996655   478899999999999998874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.81  E-value=2.1e-19  Score=155.97  Aligned_cols=147  Identities=20%  Similarity=0.293  Sum_probs=126.2

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCCh--hhhhccCCceEEEccCCcccc-cCCcCCCCCCCCCeEeccCccccccCCcc
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPR--QLLRIITRSVLLDLFDNLLSG-HFPAEVGNLKHLVSLDISSNMFSGEIPTT   78 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~--~~~~~~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~   78 (223)
                      +|.+++++++|++|++++|++. .++.  ..+...+.|++|++++|.+.+ ..+..|..+++|++|++++|.+++..|..
T Consensus       369 ~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  447 (562)
T 3a79_B          369 VFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC  447 (562)
T ss_dssp             TTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS
T ss_pred             hhhhhcccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh
Confidence            6889999999999999999998 6664  335667888999999999998 44456889999999999999998776665


Q ss_pred             ccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhh
Q 048080           79 LGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAI  152 (223)
Q Consensus        79 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~  152 (223)
                      +.  ++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.+++++|++.|.|+..+.
T Consensus       448 l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~  518 (562)
T 3a79_B          448 LP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY  518 (562)
T ss_dssp             CC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred             hc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence            54  79999999999999 6666666999999999999999954444489999999999999999999986544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.81  E-value=2.7e-19  Score=134.92  Aligned_cols=130  Identities=18%  Similarity=0.249  Sum_probs=115.4

Q ss_pred             eEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCC
Q 048080           38 VLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRN  117 (223)
Q Consensus        38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  117 (223)
                      +.+++++|.+. .+|..+.  ++|++|++++|.++ .+|..|..+++|+.|++++|.+++..+.+|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            67999999999 5555443  68999999999998 66789999999999999999999888889999999999999999


Q ss_pred             ccccccchhhhCCCCCCEEeccCCcCcccCCc-hhhhcCCcceeecCCCCCCCCC
Q 048080          118 NLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI-EAIFNSTKGISLVGNENLCGGS  171 (223)
Q Consensus       118 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~l~~l~~~~n~~~C~~~  171 (223)
                      .+++..|..|..+++|+.|++++|.++...+. ......++.+++.+|++.|+|.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence            99998888999999999999999999965543 3456788999999999999985

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=6.7e-20  Score=147.89  Aligned_cols=162  Identities=19%  Similarity=0.158  Sum_probs=115.2

Q ss_pred             CCCCC--CCCCCCCeeecccCccccCCCh---hhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccc---
Q 048080            2 RPPSL--GNCQNLILLTTCKNKLSGTVPR---QLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSG---   73 (223)
Q Consensus         2 ip~~~--~~l~~L~~L~l~~n~i~~~~p~---~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---   73 (223)
                      +|..+  +++++|++|++++|.+.+..+.   ..+...+.|++|++++|.+.+..+..|..+++|++|++++|.+.+   
T Consensus       107 ~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  186 (310)
T 4glp_A          107 MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG  186 (310)
T ss_dssp             CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH
T ss_pred             hhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh
Confidence            46666  8888999999999998854441   222356778999999999988888888899999999999998754   


Q ss_pred             cC-CccccCCCCCcEEEcccCcccccCCc----cccCCCCCCEEECCCCccccccchhhhCC---CCCCEEeccCCcCcc
Q 048080           74 EI-PTTLGGCTSLEHLSMQDNSFTGSIPS----TLSSLKSITELDLSRNNLSGHIPQYLENL---SFLSFLNLSYNHFEG  145 (223)
Q Consensus        74 ~~-~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~p~~~~~l---~~L~~l~l~~N~l~~  145 (223)
                      .. +..+..+++|++|++++|+++. ++.    .+..+++|++|+|++|.+++..|..+..+   ++|+.|++++|+++ 
T Consensus       187 ~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-  264 (310)
T 4glp_A          187 LMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-  264 (310)
T ss_dssp             HHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-
T ss_pred             hhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-
Confidence            22 2234667788888888887762 222    24566778888888888877766666665   57788888888777 


Q ss_pred             cCCchhhhcCCcceeecCCCC
Q 048080          146 KVPIEAIFNSTKGISLVGNEN  166 (223)
Q Consensus       146 ~~~~~~~~~~l~~l~~~~n~~  166 (223)
                      .+|.. ....++.+++++|..
T Consensus       265 ~lp~~-~~~~L~~L~Ls~N~l  284 (310)
T 4glp_A          265 QVPKG-LPAKLRVLDLSSNRL  284 (310)
T ss_dssp             SCCSC-CCSCCSCEECCSCCC
T ss_pred             chhhh-hcCCCCEEECCCCcC
Confidence            44432 235677777777754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=6.8e-19  Score=141.98  Aligned_cols=149  Identities=19%  Similarity=0.332  Sum_probs=119.8

Q ss_pred             CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCC
Q 048080            6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSL   85 (223)
Q Consensus         6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   85 (223)
                      ++++++|+.|++++|.+. .+|.  +...+.|++|++++|.+.+..+  +..+++|++|++++|.+++.  ..+..+++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L  109 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSI  109 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred             HHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCC
Confidence            345789999999999998 7773  4567788999999999996555  89999999999999999865  468999999


Q ss_pred             cEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCC
Q 048080           86 EHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNE  165 (223)
Q Consensus        86 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~  165 (223)
                      +.|++++|.+++. +. +..+++|++|++++|.+++..+  +..+++|+.|++++|.+++..+ ......++.+++++|.
T Consensus       110 ~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          110 KTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK  184 (308)
T ss_dssp             CEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             CEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc
Confidence            9999999999964 43 8889999999999999986544  7788888888888888775333 3344556666666654


Q ss_pred             C
Q 048080          166 N  166 (223)
Q Consensus       166 ~  166 (223)
                      .
T Consensus       185 l  185 (308)
T 1h6u_A          185 I  185 (308)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=4.7e-19  Score=141.83  Aligned_cols=151  Identities=28%  Similarity=0.282  Sum_probs=122.6

Q ss_pred             CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCC
Q 048080            5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTS   84 (223)
Q Consensus         5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   84 (223)
                      .+..+++|++|++++|++. .++.  +...+.|++|++++|.+++. + .+..+++|++|++++|.+++.  ..+..+++
T Consensus        63 ~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~  135 (291)
T 1h6t_A           63 GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQ  135 (291)
T ss_dssp             TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECTTSCCCCC--GGGGGCTT
T ss_pred             hHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCCEEECCCCcCCCC--hhhcCCCC
Confidence            4778889999999999988 6665  56677789999999988853 3 378889999999999998864  56888899


Q ss_pred             CcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCC
Q 048080           85 LEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN  164 (223)
Q Consensus        85 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n  164 (223)
                      |+.|++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|+.|++++|.+++. +.......++.+++.+|
T Consensus       136 L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEE
T ss_pred             CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCC
Confidence            99999999999865  568888999999999999986655  88899999999999998853 44555677888888888


Q ss_pred             CCC
Q 048080          165 ENL  167 (223)
Q Consensus       165 ~~~  167 (223)
                      +..
T Consensus       211 ~i~  213 (291)
T 1h6t_A          211 ECL  213 (291)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.80  E-value=2.2e-19  Score=141.82  Aligned_cols=152  Identities=20%  Similarity=0.230  Sum_probs=121.7

Q ss_pred             CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCC
Q 048080            5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTS   84 (223)
Q Consensus         5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   84 (223)
                      .+..+++|++|++++|.+. .+| . +...+.|++|++++|.+++..+  +..+++|++|++++|.+++..+  +.. ++
T Consensus        36 ~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~--~~~-~~  107 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG--IPS-AC  107 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT--CCC-SS
T ss_pred             chhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc--ccc-Cc
Confidence            4667889999999999998 777 2 4556778999999999986555  8889999999999999986433  233 88


Q ss_pred             CcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCC
Q 048080           85 LEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN  164 (223)
Q Consensus        85 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n  164 (223)
                      |+.|++++|.+++. + .+..+++|+.|++++|++++. + .+..+++|+.|++++|++++. +.......++.+++.+|
T Consensus       108 L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          108 LSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEE
T ss_pred             ccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCC
Confidence            99999999999854 3 488889999999999999865 3 688899999999999999876 44455677888888888


Q ss_pred             CCCCC
Q 048080          165 ENLCG  169 (223)
Q Consensus       165 ~~~C~  169 (223)
                      +..|.
T Consensus       183 ~~~~~  187 (263)
T 1xeu_A          183 KCVNE  187 (263)
T ss_dssp             EEECC
T ss_pred             cccCC
Confidence            76554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.80  E-value=2.4e-19  Score=162.54  Aligned_cols=138  Identities=21%  Similarity=0.180  Sum_probs=78.0

Q ss_pred             CCCCeeecccCccccCCChhhhhccCCceEEEccCCccccc-CCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEE
Q 048080           10 QNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGH-FPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHL   88 (223)
Q Consensus        10 ~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   88 (223)
                      ++|++|++++|.++ .++...+..++.|++|++++|...+. .|..|.++++|++|++++|.+++..|+.|.++++|++|
T Consensus        24 ~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           24 NTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             TTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            55666666666665 33333344455556666666633322 25556666666666666666665556666666666666


Q ss_pred             EcccCcccccCCcc--ccCCCCCCEEECCCCccccccc-hhhhCCCCCCEEeccCCcCcccCC
Q 048080           89 SMQDNSFTGSIPST--LSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFEGKVP  148 (223)
Q Consensus        89 ~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~~~  148 (223)
                      +|++|.+++..|..  |..+++|++|+|++|.+++..+ ..|..+++|+.|++++|.+.+..+
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~  165 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE  165 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence            66666665544333  5566666666666666655433 345566666666666666554443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.79  E-value=1.1e-18  Score=142.51  Aligned_cols=148  Identities=24%  Similarity=0.299  Sum_probs=94.9

Q ss_pred             CCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcE
Q 048080            8 NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEH   87 (223)
Q Consensus         8 ~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   87 (223)
                      .+++|+.|++++|.+. .++.  +...+.|++|++++|.+++..+  +..+++|++|++++|.+++.  +.+..+++|+.
T Consensus       197 ~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~  269 (347)
T 4fmz_A          197 SLTSLHYFTAYVNQIT-DITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKM  269 (347)
T ss_dssp             GCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred             CCCccceeecccCCCC-CCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCE
Confidence            3344444444444443 2222  3445556667777776664333  66677777777777776653  45667777777


Q ss_pred             EEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCC
Q 048080           88 LSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNE  165 (223)
Q Consensus        88 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~  165 (223)
                      |++++|.+++.  ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..| ...+..++.+++.+|+
T Consensus       270 L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          270 LNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV  344 (347)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred             EEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence            77777777743  346677777777777777777777777777777777777777776555 4456667777777765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=1.9e-19  Score=145.20  Aligned_cols=157  Identities=18%  Similarity=0.213  Sum_probs=129.0

Q ss_pred             CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCccccc---C-CcCCCCCCCCCeEeccCccccccCCc---c
Q 048080            6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGH---F-PAEVGNLKHLVSLDISSNMFSGEIPT---T   78 (223)
Q Consensus         6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~---~-~~~~~~l~~L~~L~l~~n~l~~~~~~---~   78 (223)
                      +..+++|++|++++|++. .++...+...+.|++|++++|.+.+.   . +..+..+++|++|++++|.++...+.   .
T Consensus       141 ~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l  219 (310)
T 4glp_A          141 QWLKPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL  219 (310)
T ss_dssp             TTBCSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred             hhhccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence            456899999999999998 77766777788899999999997642   2 23457899999999999999743221   3


Q ss_pred             ccCCCCCcEEEcccCcccccCCccccCC---CCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcC
Q 048080           79 LGGCTSLEHLSMQDNSFTGSIPSTLSSL---KSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNS  155 (223)
Q Consensus        79 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~  155 (223)
                      +..+++|++|++++|++++..|..+..+   ++|++|++++|+++ .+|..+.  ++|+.|++++|++++. |....+..
T Consensus       220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~  295 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPE  295 (310)
T ss_dssp             HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCC
T ss_pred             HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCC
Confidence            5788999999999999998878777776   69999999999999 6676654  7999999999999964 43456788


Q ss_pred             CcceeecCCCCC
Q 048080          156 TKGISLVGNENL  167 (223)
Q Consensus       156 l~~l~~~~n~~~  167 (223)
                      ++.+++++|+..
T Consensus       296 L~~L~L~~N~l~  307 (310)
T 4glp_A          296 VDNLTLDGNPFL  307 (310)
T ss_dssp             CSCEECSSTTTS
T ss_pred             ccEEECcCCCCC
Confidence            899999999864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=1.2e-19  Score=146.80  Aligned_cols=161  Identities=19%  Similarity=0.126  Sum_probs=114.3

Q ss_pred             CCCCCCCCeeecccCccccCCChh----------------hhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCc
Q 048080            6 LGNCQNLILLTTCKNKLSGTVPRQ----------------LLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSN   69 (223)
Q Consensus         6 ~~~l~~L~~L~l~~n~i~~~~p~~----------------~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n   69 (223)
                      |..+++|++|++++|.+. .++..                .....+.|++|++++|.+++..+..|..+++|++|++++|
T Consensus        76 ~~~l~~L~~L~Ls~n~l~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N  154 (317)
T 3o53_A           76 LESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN  154 (317)
T ss_dssp             ETTCTTCCEEECCSSEEE-EEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS
T ss_pred             hhhcCCCCEEECcCCccc-cccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC
Confidence            566677777777777665 33311                0112345677777777777766777777888888888888


Q ss_pred             cccccCCccc-cCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCC
Q 048080           70 MFSGEIPTTL-GGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP  148 (223)
Q Consensus        70 ~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~  148 (223)
                      .+++..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|.+++.. ..+..+++|+.|++++|+++...+
T Consensus       155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~~l~~  231 (317)
T 3o53_A          155 EIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEK  231 (317)
T ss_dssp             CCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCEECT
T ss_pred             CCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCcccchhh
Confidence            8887766665 3678888888888888855 22 334788888888888888554 448888888999999888885433


Q ss_pred             chhhhcCCcceeecCCCCCCCC
Q 048080          149 IEAIFNSTKGISLVGNENLCGG  170 (223)
Q Consensus       149 ~~~~~~~l~~l~~~~n~~~C~~  170 (223)
                      .......++.+++++|++.|++
T Consensus       232 ~~~~l~~L~~L~l~~N~~~~~~  253 (317)
T 3o53_A          232 ALRFSQNLEHFDLRGNGFHCGT  253 (317)
T ss_dssp             TCCCCTTCCEEECTTCCCBHHH
T ss_pred             HhhcCCCCCEEEccCCCccCcC
Confidence            3345567888888888887753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.79  E-value=9.7e-20  Score=157.34  Aligned_cols=162  Identities=21%  Similarity=0.242  Sum_probs=133.6

Q ss_pred             CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcccccc-CCccccC
Q 048080            3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGE-IPTTLGG   81 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~   81 (223)
                      |.+|+++++|++|++++|++. .++...+..++.|++|++++|.+++..+..|..+++|++|++++|.+++. .|..|..
T Consensus        43 ~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  121 (549)
T 2z81_A           43 HGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN  121 (549)
T ss_dssp             SSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTT
T ss_pred             hhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhc
Confidence            678999999999999999998 66666677788889999999999987777799999999999999999864 4678999


Q ss_pred             CCCCcEEEcccCc-ccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch--hhhcCCcc
Q 048080           82 CTSLEHLSMQDNS-FTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE--AIFNSTKG  158 (223)
Q Consensus        82 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~--~~~~~l~~  158 (223)
                      +++|++|++++|. +....+..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+.. .+..  .....++.
T Consensus       122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~  200 (549)
T 2z81_A          122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRY  200 (549)
T ss_dssp             CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSE
T ss_pred             cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccE
Confidence            9999999999998 454444689999999999999999999889888888888888888887653 2221  22566777


Q ss_pred             eeecCCCC
Q 048080          159 ISLVGNEN  166 (223)
Q Consensus       159 l~~~~n~~  166 (223)
                      +++++|..
T Consensus       201 L~L~~n~l  208 (549)
T 2z81_A          201 LELRDTNL  208 (549)
T ss_dssp             EEEESCBC
T ss_pred             EEccCCcc
Confidence            77777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.79  E-value=1.4e-19  Score=134.45  Aligned_cols=136  Identities=18%  Similarity=0.165  Sum_probs=117.3

Q ss_pred             CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCC
Q 048080            4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCT   83 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~   83 (223)
                      +.+.++++|+.|++++|++. .+|. +....+.|++|++++|.+++.  ..|..+++|++|++++|.+++..+..|..++
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   88 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             HhcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence            35677899999999999998 7764 556666889999999999976  6789999999999999999977666679999


Q ss_pred             CCcEEEcccCcccccCCc--cccCCCCCCEEECCCCccccccch----hhhCCCCCCEEeccCCcCcc
Q 048080           84 SLEHLSMQDNSFTGSIPS--TLSSLKSITELDLSRNNLSGHIPQ----YLENLSFLSFLNLSYNHFEG  145 (223)
Q Consensus        84 ~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~l~l~~N~l~~  145 (223)
                      +|+.|++++|.++ .+|.  .+..+++|+.|++++|.++ ..|.    .+..+++|+.+|+++|....
T Consensus        89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            9999999999997 4555  7889999999999999998 4455    48899999999999998764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.79  E-value=3e-19  Score=128.91  Aligned_cols=127  Identities=20%  Similarity=0.269  Sum_probs=70.4

Q ss_pred             CCCCeeecccCccc-cCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEE
Q 048080           10 QNLILLTTCKNKLS-GTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHL   88 (223)
Q Consensus        10 ~~L~~L~l~~n~i~-~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   88 (223)
                      ++|+.|++++|.+. +.+|.. +...+.|++|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            45666666666655 445542 23344456666666665543  445556666666666666655455555555666666


Q ss_pred             EcccCccccc-CCccccCCCCCCEEECCCCccccccc---hhhhCCCCCCEEecc
Q 048080           89 SMQDNSFTGS-IPSTLSSLKSITELDLSRNNLSGHIP---QYLENLSFLSFLNLS  139 (223)
Q Consensus        89 ~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~l~l~  139 (223)
                      ++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            6666665542 22445556666666666666654433   345556666665554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=1.7e-19  Score=154.11  Aligned_cols=159  Identities=19%  Similarity=0.122  Sum_probs=92.7

Q ss_pred             CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCc----------------CCCCCCCCCeEecc
Q 048080            4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPA----------------EVGNLKHLVSLDIS   67 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~----------------~~~~l~~L~~L~l~   67 (223)
                      .+|+++++|++|++++|.+.+..|   +..++.|++|++++|.+++..+.                ....+++|++|+++
T Consensus        52 ~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~  128 (487)
T 3oja_A           52 ADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA  128 (487)
T ss_dssp             GGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECC
T ss_pred             HHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECC
Confidence            445555555555555555552222   33444455555555555432211                00113344555555


Q ss_pred             CccccccCCccccCCCCCcEEEcccCcccccCCcccc-CCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCccc
Q 048080           68 SNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLS-SLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGK  146 (223)
Q Consensus        68 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~  146 (223)
                      +|.+++..|..|..+++|+.|++++|.+++..|..+. .+++|++|+|++|.+++..+  +..+++|+.|++++|.+++.
T Consensus       129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~  206 (487)
T 3oja_A          129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM  206 (487)
T ss_dssp             SSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE
T ss_pred             CCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC
Confidence            5555555555666666777777777777666666554 56677777777777765522  33477777888888887776


Q ss_pred             CCchhhhcCCcceeecCCCCC
Q 048080          147 VPIEAIFNSTKGISLVGNENL  167 (223)
Q Consensus       147 ~~~~~~~~~l~~l~~~~n~~~  167 (223)
                      .+.......+..+++++|...
T Consensus       207 ~~~~~~l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          207 GPEFQSAAGVTWISLRNNKLV  227 (487)
T ss_dssp             CGGGGGGTTCSEEECTTSCCC
T ss_pred             CHhHcCCCCccEEEecCCcCc
Confidence            555556677888888887653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=2.8e-18  Score=149.98  Aligned_cols=150  Identities=27%  Similarity=0.278  Sum_probs=123.2

Q ss_pred             CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCC
Q 048080            5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTS   84 (223)
Q Consensus         5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   84 (223)
                      .++.+++|+.|+|++|.+. .++.  +..++.|+.|+|++|.+.+. + .+..+++|+.|+|++|.+.+.  ..+..+++
T Consensus        60 ~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~  132 (605)
T 1m9s_A           60 GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQ  132 (605)
T ss_dssp             TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEECTTSCCCCC--GGGGGCTT
T ss_pred             HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEecCCCCCCC--ccccCCCc
Confidence            6888999999999999998 6665  56677889999999999853 3 688899999999999999864  45888999


Q ss_pred             CcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCC
Q 048080           85 LEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN  164 (223)
Q Consensus        85 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n  164 (223)
                      |+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|++++|.+++. +....+..++.+++.+|
T Consensus       133 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          133 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             CSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSE
T ss_pred             cCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCC
Confidence            99999999999865  568889999999999999987766  88899999999999998864 44455667777777776


Q ss_pred             CC
Q 048080          165 EN  166 (223)
Q Consensus       165 ~~  166 (223)
                      +.
T Consensus       208 ~l  209 (605)
T 1m9s_A          208 EC  209 (605)
T ss_dssp             EE
T ss_pred             cC
Confidence            43

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.77  E-value=4.9e-18  Score=126.06  Aligned_cols=120  Identities=19%  Similarity=0.233  Sum_probs=107.8

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG   81 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   81 (223)
                      +|..+.  ++|+.|++++|++. .+|...+...+.|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..
T Consensus        22 ~p~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~   98 (177)
T 2o6r_A           22 VPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK   98 (177)
T ss_dssp             CCTTCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCCC--CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhC
Confidence            565444  78999999999998 788877788888999999999999888888999999999999999999888888999


Q ss_pred             CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccc
Q 048080           82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP  124 (223)
Q Consensus        82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p  124 (223)
                      +++|++|++++|.+++..+..|..+++|++|++++|.+++..|
T Consensus        99 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999999999999997777778999999999999999997655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=1.7e-18  Score=140.10  Aligned_cols=154  Identities=23%  Similarity=0.170  Sum_probs=85.7

Q ss_pred             CCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccc-----------------
Q 048080            9 CQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMF-----------------   71 (223)
Q Consensus         9 l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-----------------   71 (223)
                      +++|++|++++|.+. .++...+...+.|++|++++|.+++..+  |..+++|++|++++|.+                 
T Consensus        33 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n  109 (317)
T 3o53_A           33 AWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANN  109 (317)
T ss_dssp             GGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred             CCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCC
Confidence            345555555555555 4443344444455555555555553332  44445555554444444                 


Q ss_pred             -----------------------cccCCccccCCCCCcEEEcccCcccccCCccc-cCCCCCCEEECCCCccccccchhh
Q 048080           72 -----------------------SGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTL-SSLKSITELDLSRNNLSGHIPQYL  127 (223)
Q Consensus        72 -----------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~p~~~  127 (223)
                                             ++..+..+..+++|+.|++++|.+++..+..+ ..+++|++|++++|.+++. +. .
T Consensus       110 ~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~  187 (317)
T 3o53_A          110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-Q  187 (317)
T ss_dssp             CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-C
T ss_pred             ccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-c
Confidence                                   43334455555666666666666665554444 2456666666666666644 22 2


Q ss_pred             hCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCCCC
Q 048080          128 ENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENL  167 (223)
Q Consensus       128 ~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~~~  167 (223)
                      ..+++|+.|++++|.+++..+.......++.+++++|...
T Consensus       188 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          188 VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred             cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc
Confidence            2366777777777777755444455667777888887653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=4.4e-18  Score=136.21  Aligned_cols=149  Identities=22%  Similarity=0.259  Sum_probs=128.8

Q ss_pred             CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCC
Q 048080            6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSL   85 (223)
Q Consensus         6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   85 (223)
                      ++.+++|+.|++++|.+. .++.  +...+.|++|++++|.+++..+  +..+++|++|++++|.+++.  ..+..+++|
T Consensus        42 ~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L  114 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKL  114 (291)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTC
T ss_pred             hhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCC
Confidence            346788999999999998 7764  5667888999999999996655  89999999999999999864  348999999


Q ss_pred             cEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCC
Q 048080           86 EHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNE  165 (223)
Q Consensus        86 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~  165 (223)
                      +.|++++|.+++.  ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..+ ......++.+++++|.
T Consensus       115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc
Confidence            9999999999964  4688999999999999999966  578999999999999999997655 5567788899999986


Q ss_pred             C
Q 048080          166 N  166 (223)
Q Consensus       166 ~  166 (223)
                      .
T Consensus       190 i  190 (291)
T 1h6t_A          190 I  190 (291)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.76  E-value=6.5e-18  Score=124.78  Aligned_cols=108  Identities=20%  Similarity=0.251  Sum_probs=75.0

Q ss_pred             eEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCC
Q 048080           38 VLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRN  117 (223)
Q Consensus        38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  117 (223)
                      +.+++++|.++. +|..+  .++|++|++++|.++++.|..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus        12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            456666666663 34333  256677777777777666667777777777777777777666666677777777777777


Q ss_pred             ccccccchhhhCCCCCCEEeccCCcCcccCC
Q 048080          118 NLSGHIPQYLENLSFLSFLNLSYNHFEGKVP  148 (223)
Q Consensus       118 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~  148 (223)
                      ++++..+..|..+++|+.|++++|++.|.++
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            7776666667777777777777777777765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.76  E-value=2.2e-19  Score=160.14  Aligned_cols=141  Identities=26%  Similarity=0.307  Sum_probs=106.0

Q ss_pred             CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCC
Q 048080            3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC   82 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l   82 (223)
                      |+.|..++.|+.|+|++|.+. .+|..++. ++.|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|..|
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            567888888889999998888 88888774 556688899999888 77788888888999999999888 568888888


Q ss_pred             CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCC-CCEEeccCCcCcccCC
Q 048080           83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF-LSFLNLSYNHFEGKVP  148 (223)
Q Consensus        83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~l~l~~N~l~~~~~  148 (223)
                      ++|++|+|++|.++ .+|..|..+++|++|+|++|.+++.+|..+..+.. +..+++++|.+++.+|
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            88999999998887 66777888888999999999888887776644321 1224455555555444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.76  E-value=4.4e-18  Score=122.75  Aligned_cols=127  Identities=17%  Similarity=0.143  Sum_probs=109.4

Q ss_pred             cCCceEEEccCCccc-ccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEE
Q 048080           34 ITRSVLLDLFDNLLS-GHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITEL  112 (223)
Q Consensus        34 ~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  112 (223)
                      .+.++.|++++|.++ +..|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            466799999999998 77888889999999999999999976  778999999999999999998788888889999999


Q ss_pred             ECCCCccccc-cchhhhCCCCCCEEeccCCcCcccCC----chhhhcCCcceeec
Q 048080          113 DLSRNNLSGH-IPQYLENLSFLSFLNLSYNHFEGKVP----IEAIFNSTKGISLV  162 (223)
Q Consensus       113 ~L~~N~l~~~-~p~~~~~l~~L~~l~l~~N~l~~~~~----~~~~~~~l~~l~~~  162 (223)
                      ++++|.+++. .+..+..+++|+.|++++|++++..+    ....+..++.++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            9999999974 44789999999999999999997655    23445566666543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.76  E-value=9.6e-18  Score=132.34  Aligned_cols=132  Identities=21%  Similarity=0.231  Sum_probs=115.3

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG   81 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   81 (223)
                      +| .++.+++|++|++++|++. .++.  +..++.|++|++++|.+++..+  +.. ++|++|++++|.+++.  ..+..
T Consensus        56 l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~  126 (263)
T 1xeu_A           56 LA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIH  126 (263)
T ss_dssp             CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTT
T ss_pred             ch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEECCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcC
Confidence            45 6889999999999999998 7776  6677888999999999996443  233 8999999999999975  46899


Q ss_pred             CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCccc
Q 048080           82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGK  146 (223)
Q Consensus        82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~  146 (223)
                      +++|+.|++++|++++. + .+..+++|+.|++++|.+++.  ..+..+++|+.|++++|++.+.
T Consensus       127 l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          127 LKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            99999999999999965 4 689999999999999999976  6789999999999999999865

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.75  E-value=4.4e-18  Score=125.17  Aligned_cols=131  Identities=18%  Similarity=0.147  Sum_probs=113.8

Q ss_pred             cCCceEEEccCCccc-ccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEE
Q 048080           34 ITRSVLLDLFDNLLS-GHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITEL  112 (223)
Q Consensus        34 ~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  112 (223)
                      ++.++.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            466799999999998 67788889999999999999999976  788999999999999999998788888889999999


Q ss_pred             ECCCCcccccc-chhhhCCCCCCEEeccCCcCcccCC----chhhhcCCcceeecCCCC
Q 048080          113 DLSRNNLSGHI-PQYLENLSFLSFLNLSYNHFEGKVP----IEAIFNSTKGISLVGNEN  166 (223)
Q Consensus       113 ~L~~N~l~~~~-p~~~~~l~~L~~l~l~~N~l~~~~~----~~~~~~~l~~l~~~~n~~  166 (223)
                      ++++|.+++.. +..+..+++|+.|++++|++++..+    ....+..++.+++.+|..
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            99999999653 2789999999999999999997655    334567788888887754

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.75  E-value=7.2e-18  Score=143.23  Aligned_cols=152  Identities=24%  Similarity=0.296  Sum_probs=94.5

Q ss_pred             CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCC
Q 048080            5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTS   84 (223)
Q Consensus         5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   84 (223)
                      .+..+++|+.|++++|.+. .++.  +...+.|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++
T Consensus       238 ~l~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~  310 (466)
T 1o6v_A          238 TLASLTNLTDLDLANNQIS-NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN  310 (466)
T ss_dssp             GGGGCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred             hhhcCCCCCEEECCCCccc-cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCC
Confidence            3445555666666666555 3332  3444555666666666654333  5566666666666666665433  566677


Q ss_pred             CcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCC
Q 048080           85 LEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN  164 (223)
Q Consensus        85 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n  164 (223)
                      |+.|++++|++++..|  +..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++..| ......++.+++.+|
T Consensus       311 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  385 (466)
T ss_dssp             CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCE
T ss_pred             CCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCC
Confidence            7777777777765544  56667777777777777654  356777777777777777776655 445566667777776


Q ss_pred             CCCC
Q 048080          165 ENLC  168 (223)
Q Consensus       165 ~~~C  168 (223)
                      ++..
T Consensus       386 ~~~~  389 (466)
T 1o6v_A          386 AWTN  389 (466)
T ss_dssp             EEEC
T ss_pred             cccC
Confidence            5543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.74  E-value=2.5e-17  Score=122.13  Aligned_cols=108  Identities=21%  Similarity=0.284  Sum_probs=69.9

Q ss_pred             eEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCC
Q 048080           38 VLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRN  117 (223)
Q Consensus        38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  117 (223)
                      +.+++++|.+. .+|..+.  ++|++|++++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            45666666665 3443332  56666666666666666666666667777777777776555555666677777777777


Q ss_pred             ccccccchhhhCCCCCCEEeccCCcCcccCC
Q 048080          118 NLSGHIPQYLENLSFLSFLNLSYNHFEGKVP  148 (223)
Q Consensus       118 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~  148 (223)
                      ++++..+..|..+++|+.|++++|++.|.++
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            7775555556677777777777777776655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.73  E-value=2e-17  Score=122.11  Aligned_cols=109  Identities=24%  Similarity=0.301  Sum_probs=99.9

Q ss_pred             CCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEc
Q 048080           11 NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSM   90 (223)
Q Consensus        11 ~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L   90 (223)
                      ..+.+++++|++. .+|..++   +.+++|++++|.+++..|..|..+++|++|++++|.++++.+..|..+++|++|+|
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            4688999999998 8997663   67799999999999988999999999999999999999888888999999999999


Q ss_pred             ccCcccccCCccccCCCCCCEEECCCCcccccc
Q 048080           91 QDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI  123 (223)
Q Consensus        91 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  123 (223)
                      ++|++++..++.|..+++|++|+|++|.++...
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            999999888888999999999999999998554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.73  E-value=4.2e-17  Score=133.10  Aligned_cols=152  Identities=22%  Similarity=0.273  Sum_probs=92.1

Q ss_pred             CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCC
Q 048080            6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSL   85 (223)
Q Consensus         6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   85 (223)
                      +..+++|+.|++++|.+. .++.  +...+.|+.|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|
T Consensus       173 ~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L  245 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQL  245 (347)
T ss_dssp             GGGCTTCSEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred             hccCCCCCEEEccCCccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCC
Confidence            334444444444444444 3332  3334444555555555443322  5566677777777777765433  6677777


Q ss_pred             cEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCcceeecCC
Q 048080           86 EHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGISLVGN  164 (223)
Q Consensus        86 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l~~~~n  164 (223)
                      +.|++++|.+++.  ..+..+++|++|++++|.+++.  +.+..+++|+.|++++|++.+..+.. .....++.+++++|
T Consensus       246 ~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  321 (347)
T 4fmz_A          246 TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN  321 (347)
T ss_dssp             CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred             CEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence            7777777777643  3467777777777777777754  34677777788888877777554432 34566777778777


Q ss_pred             CCCC
Q 048080          165 ENLC  168 (223)
Q Consensus       165 ~~~C  168 (223)
                      +...
T Consensus       322 ~l~~  325 (347)
T 4fmz_A          322 HITD  325 (347)
T ss_dssp             SCCC
T ss_pred             cccc
Confidence            6543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=1.4e-18  Score=150.98  Aligned_cols=109  Identities=27%  Similarity=0.295  Sum_probs=99.2

Q ss_pred             CceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECC
Q 048080           36 RSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLS  115 (223)
Q Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  115 (223)
                      .|+.|++++|.+++ +|. |..+++|+.|++++|.++ .+|..++.+++|+.|+|++|.+++ +| .+..+++|+.|+|+
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            46899999999996 565 899999999999999999 778899999999999999999996 56 79999999999999


Q ss_pred             CCcccccc-chhhhCCCCCCEEeccCCcCcccCCc
Q 048080          116 RNNLSGHI-PQYLENLSFLSFLNLSYNHFEGKVPI  149 (223)
Q Consensus       116 ~N~l~~~~-p~~~~~l~~L~~l~l~~N~l~~~~~~  149 (223)
                      +|.+++.. |..+..+++|+.|++++|++++..+.
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            99999887 99999999999999999999987664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=3.9e-17  Score=142.77  Aligned_cols=149  Identities=22%  Similarity=0.257  Sum_probs=129.7

Q ss_pred             CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCC
Q 048080            6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSL   85 (223)
Q Consensus         6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   85 (223)
                      +..+++|+.|++++|.+. .+|.  +..++.|+.|+|++|.+.+..+  +..+++|+.|+|++|.+++.  ..+..+++|
T Consensus        39 ~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L  111 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKL  111 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTC
T ss_pred             hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCC
Confidence            346789999999999998 7774  5667888999999999997655  88999999999999999864  368999999


Q ss_pred             cEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCC
Q 048080           86 EHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNE  165 (223)
Q Consensus        86 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~  165 (223)
                      +.|+|++|.+++.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|++++|.+.+..| ...+..++.+++++|.
T Consensus       112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC
Confidence            9999999999954  4589999999999999999966  578999999999999999998766 5567788999999986


Q ss_pred             C
Q 048080          166 N  166 (223)
Q Consensus       166 ~  166 (223)
                      .
T Consensus       187 i  187 (605)
T 1m9s_A          187 I  187 (605)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.71  E-value=1.2e-16  Score=135.63  Aligned_cols=103  Identities=29%  Similarity=0.507  Sum_probs=46.1

Q ss_pred             CCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCC
Q 048080           55 VGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLS  134 (223)
Q Consensus        55 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  134 (223)
                      +..+++|++|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+
T Consensus       239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  312 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT  312 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred             hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence            3344444444444444443322  4444445555555554443322  4444455555555555543322  44445555


Q ss_pred             EEeccCCcCcccCCchhhhcCCcceeecCC
Q 048080          135 FLNLSYNHFEGKVPIEAIFNSTKGISLVGN  164 (223)
Q Consensus       135 ~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n  164 (223)
                      .|++++|++++..+ ......++.+++.+|
T Consensus       313 ~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          313 YLTLYFNNISDISP-VSSLTKLQRLFFYNN  341 (466)
T ss_dssp             EEECCSSCCSCCGG-GGGCTTCCEEECCSS
T ss_pred             EEECcCCcCCCchh-hccCccCCEeECCCC
Confidence            55555555544333 223334444444444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.71  E-value=7.2e-17  Score=119.63  Aligned_cols=107  Identities=23%  Similarity=0.256  Sum_probs=97.7

Q ss_pred             CCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcc
Q 048080           12 LILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQ   91 (223)
Q Consensus        12 L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~   91 (223)
                      -+.+++++|++. ++|..++   +.|++|++++|.+++..|..|..+++|++|+|++|.++++.+..|..+++|+.|+|+
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            478999999997 9998664   677999999999999889999999999999999999998877788999999999999


Q ss_pred             cCcccccCCccccCCCCCCEEECCCCccccc
Q 048080           92 DNSFTGSIPSTLSSLKSITELDLSRNNLSGH  122 (223)
Q Consensus        92 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  122 (223)
                      +|++++..+..|..+++|++|+|++|.+...
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            9999977777799999999999999999844

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.70  E-value=1.5e-18  Score=144.02  Aligned_cols=110  Identities=25%  Similarity=0.282  Sum_probs=53.7

Q ss_pred             CCCCCCeEeccCccccc-----cCCccccCCCCCcEEEcccCccc----ccCCccccCCCCCCEEECCCCccccc----c
Q 048080           57 NLKHLVSLDISSNMFSG-----EIPTTLGGCTSLEHLSMQDNSFT----GSIPSTLSSLKSITELDLSRNNLSGH----I  123 (223)
Q Consensus        57 ~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~----~  123 (223)
                      .+++|++|++++|.++.     ..+..+..+++|+.|+|++|.++    ..+|..+..+++|++|+|++|.+++.    +
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence            34445555555554441     22224445555555555555553    34444555555555555555555543    3


Q ss_pred             chhhhC--CCCCCEEeccCCcCcc----cCCch--hhhcCCcceeecCCCC
Q 048080          124 PQYLEN--LSFLSFLNLSYNHFEG----KVPIE--AIFNSTKGISLVGNEN  166 (223)
Q Consensus       124 p~~~~~--l~~L~~l~l~~N~l~~----~~~~~--~~~~~l~~l~~~~n~~  166 (223)
                      +..+..  +++|+.|++++|.++.    .++..  ..++.++.+++.+|+.
T Consensus       265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence            344422  5555556665555554    12221  1135555555555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.70  E-value=6.3e-17  Score=132.65  Aligned_cols=163  Identities=17%  Similarity=0.072  Sum_probs=101.5

Q ss_pred             CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccC-CcCCCCCCCCCe-EeccCccccccCCcc
Q 048080            1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHF-PAEVGNLKHLVS-LDISSNMFSGEIPTT   78 (223)
Q Consensus         1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~-L~l~~n~l~~~~~~~   78 (223)
                      +||..+.  +++++|++++|+|+ .+|++.|..++.|++|+|++|.+.+.+ +.+|.+++++++ +.+..|.++.+.|+.
T Consensus        23 ~iP~~l~--~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~   99 (350)
T 4ay9_X           23 EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA   99 (350)
T ss_dssp             SCCTTCC--TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred             ccCcCcC--CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence            3565553  56777777777776 777766777777777777777764433 356667766654 445556777666667


Q ss_pred             ccCCCCCcEEEcccCcccccCCc-------------------------cccCC-CCCCEEECCCCccccccchhhhCCCC
Q 048080           79 LGGCTSLEHLSMQDNSFTGSIPS-------------------------TLSSL-KSITELDLSRNNLSGHIPQYLENLSF  132 (223)
Q Consensus        79 ~~~l~~L~~L~L~~N~l~~~~~~-------------------------~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~  132 (223)
                      |..+++|++|++++|+++...+.                         .|..+ ..++.|++++|+++.+.+.. ....+
T Consensus       100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~-f~~~~  178 (350)
T 4ay9_X          100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA-FNGTQ  178 (350)
T ss_dssp             BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS-STTEE
T ss_pred             hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh-ccccc
Confidence            77777777777777766643332                         33333 24666777777777443333 34456


Q ss_pred             CCEEeccCCcCcccCCch--hhhcCCcceeecCCCCC
Q 048080          133 LSFLNLSYNHFEGKVPIE--AIFNSTKGISLVGNENL  167 (223)
Q Consensus       133 L~~l~l~~N~l~~~~~~~--~~~~~l~~l~~~~n~~~  167 (223)
                      |+.+++.+|.....+|..  .....++.+++++|...
T Consensus       179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence            777777653333344432  44677888888888654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.69  E-value=7.6e-18  Score=136.88  Aligned_cols=162  Identities=20%  Similarity=0.193  Sum_probs=124.6

Q ss_pred             CCCCCCCCCCCeeecccCccccC-CChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCc-ccccc-CCccc
Q 048080            3 PPSLGNCQNLILLTTCKNKLSGT-VPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSN-MFSGE-IPTTL   79 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~i~~~-~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~   79 (223)
                      ++.+..+++|++|++++|.+.+. +|. .+...+.|++|++++|.+++..+..+..+++|++|++++| .+++. .+..+
T Consensus        86 ~~~~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~  164 (336)
T 2ast_B           86 LAEHFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL  164 (336)
T ss_dssp             CCSCCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred             chhhccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence            44566789999999999988744 444 4556677899999999988777778888999999999998 57653 45567


Q ss_pred             cCCCCCcEEEcccC-ccccc-CCccccCCC-CCCEEECCCC--ccc-cccchhhhCCCCCCEEeccCCc-CcccCC-chh
Q 048080           80 GGCTSLEHLSMQDN-SFTGS-IPSTLSSLK-SITELDLSRN--NLS-GHIPQYLENLSFLSFLNLSYNH-FEGKVP-IEA  151 (223)
Q Consensus        80 ~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~-~L~~L~L~~N--~l~-~~~p~~~~~l~~L~~l~l~~N~-l~~~~~-~~~  151 (223)
                      ..+++|++|++++| .+++. ++..+..++ +|++|++++|  .++ +.+|..+..+++|+.|++++|. +++..+ ...
T Consensus       165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~  244 (336)
T 2ast_B          165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  244 (336)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred             hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence            78899999999999 88754 466677888 8999999998  455 4567777888999999999988 554333 334


Q ss_pred             hhcCCcceeecCCC
Q 048080          152 IFNSTKGISLVGNE  165 (223)
Q Consensus       152 ~~~~l~~l~~~~n~  165 (223)
                      ....++.+++.+|.
T Consensus       245 ~l~~L~~L~l~~~~  258 (336)
T 2ast_B          245 QLNYLQHLSLSRCY  258 (336)
T ss_dssp             GCTTCCEEECTTCT
T ss_pred             CCCCCCEeeCCCCC
Confidence            55778888888875

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.69  E-value=2.3e-16  Score=136.78  Aligned_cols=14  Identities=57%  Similarity=0.721  Sum_probs=5.8

Q ss_pred             CCCcEEEcccCccc
Q 048080           83 TSLEHLSMQDNSFT   96 (223)
Q Consensus        83 ~~L~~L~L~~N~l~   96 (223)
                      ++|+.|++++|.++
T Consensus       160 ~~L~~L~Ls~N~L~  173 (571)
T 3cvr_A          160 TSLEVLSVRNNQLT  173 (571)
T ss_dssp             TTCCEEECCSSCCS
T ss_pred             CCcCEEECCCCCCC
Confidence            34444444444444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.69  E-value=1.3e-16  Score=118.34  Aligned_cols=129  Identities=19%  Similarity=0.146  Sum_probs=106.6

Q ss_pred             hccCCceEEEccCCcccccCCcCCCCCC-CCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCC
Q 048080           32 RIITRSVLLDLFDNLLSGHFPAEVGNLK-HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSIT  110 (223)
Q Consensus        32 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  110 (223)
                      .....|++|++++|.++. ++. +..+. +|++|++++|.+++.  ..|..+++|++|++++|.+++..+..|..+++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            446677999999999995 454 44444 999999999999976  6789999999999999999977666679999999


Q ss_pred             EEECCCCccccccch--hhhCCCCCCEEeccCCcCcccCCc----hhhhcCCcceeecCCC
Q 048080          111 ELDLSRNNLSGHIPQ--YLENLSFLSFLNLSYNHFEGKVPI----EAIFNSTKGISLVGNE  165 (223)
Q Consensus       111 ~L~L~~N~l~~~~p~--~~~~l~~L~~l~l~~N~l~~~~~~----~~~~~~l~~l~~~~n~  165 (223)
                      +|++++|.++ .+|.  .+..+++|+.|++++|+++...+.    ...++.++.+++.+|.
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            9999999997 4555  789999999999999999854442    4556777778777664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.69  E-value=4.9e-16  Score=131.73  Aligned_cols=83  Identities=22%  Similarity=0.201  Sum_probs=38.7

Q ss_pred             CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCC
Q 048080            5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTS   84 (223)
Q Consensus         5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   84 (223)
                      +++.+++|++|++++|.+. .+|   +...+.|++|++++|.+++. +  +..+++|++|++++|.+++. +  +..+++
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~  128 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPL  128 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTT
T ss_pred             hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCc
Confidence            3444455555555555544 333   23334445555555554432 1  44455555555555555432 1  444455


Q ss_pred             CcEEEcccCcccc
Q 048080           85 LEHLSMQDNSFTG   97 (223)
Q Consensus        85 L~~L~L~~N~l~~   97 (223)
                      |+.|++++|++++
T Consensus       129 L~~L~l~~N~l~~  141 (457)
T 3bz5_A          129 LTYLNCARNTLTE  141 (457)
T ss_dssp             CCEEECTTSCCSC
T ss_pred             CCEEECCCCccce
Confidence            5555555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.68  E-value=4.8e-16  Score=134.83  Aligned_cols=120  Identities=28%  Similarity=0.403  Sum_probs=91.6

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG   81 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   81 (223)
                      ||..+.  ++|++|++++|.+. .+|    ..++.|++|++++|.+++ +|. +..  +|++|++++|.+++ +|.   .
T Consensus        74 lp~~l~--~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~  138 (571)
T 3cvr_A           74 LPDNLP--PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---L  138 (571)
T ss_dssp             CCSCCC--TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---C
T ss_pred             cCHhHc--CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---c
Confidence            566553  67888888888888 788    335677889999998886 555 554  89999999999886 444   5


Q ss_pred             CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCc
Q 048080           82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE  144 (223)
Q Consensus        82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~  144 (223)
                      +++|+.|++++|.+++ +|.   .+++|++|+|++|.+++ +|. +.  ++|+.|++++|.++
T Consensus       139 l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          139 PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred             CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence            7889999999999985 554   46778888888888885 555 44  67777777777776

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=4.7e-17  Score=145.20  Aligned_cols=121  Identities=22%  Similarity=0.273  Sum_probs=104.3

Q ss_pred             CChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccC
Q 048080           26 VPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSS  105 (223)
Q Consensus        26 ~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  105 (223)
                      ++.+.+.....|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|+++ .+|..|..
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            44566777888899999999999 66666669999999999999999 78889999999999999999999 77999999


Q ss_pred             CCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch
Q 048080          106 LKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE  150 (223)
Q Consensus       106 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~  150 (223)
                      +++|++|+|++|.++ .+|..|..+++|+.|++++|++++..|..
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred             CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence            999999999999998 77888999999999999999999876643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=2.5e-16  Score=136.79  Aligned_cols=122  Identities=22%  Similarity=0.248  Sum_probs=108.4

Q ss_pred             CCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEc
Q 048080           11 NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSM   90 (223)
Q Consensus        11 ~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L   90 (223)
                      .|+.|++++|.++ .+|.  +..++.|+.|++++|.++ .+|..|..+++|+.|++++|.+++ +| .+..+++|+.|+|
T Consensus       442 ~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence            5899999999998 7886  566778899999999999 778899999999999999999997 45 8999999999999


Q ss_pred             ccCcccccC-CccccCCCCCCEEECCCCccccccch---hhhCCCCCCEEec
Q 048080           91 QDNSFTGSI-PSTLSSLKSITELDLSRNNLSGHIPQ---YLENLSFLSFLNL  138 (223)
Q Consensus        91 ~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~l~l  138 (223)
                      ++|++++.. |..+..+++|+.|+|++|.+++..|.   .+..+++|+.|++
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999876 99999999999999999999977553   3445889998864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.68  E-value=2e-16  Score=129.29  Aligned_cols=108  Identities=20%  Similarity=0.203  Sum_probs=66.4

Q ss_pred             EEccCC-cccccCCcCCCCCCCCCeEeccC-ccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCC
Q 048080           40 LDLFDN-LLSGHFPAEVGNLKHLVSLDISS-NMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRN  117 (223)
Q Consensus        40 L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  117 (223)
                      ++++++ .++ .+|. +..+++|++|+|++ |.++++.+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++|
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            455555 555 3444 66666666666664 6666555566666666666666666666666666666666666666666


Q ss_pred             ccccccchhhhCCCCCCEEeccCCcCcccCCch
Q 048080          118 NLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE  150 (223)
Q Consensus       118 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~  150 (223)
                      +|++..+..|..++ |+.|++.+|++.|.+...
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~  122 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLHCSCALR  122 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGH
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCccCCCccH
Confidence            66655544454444 666666666666665543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.68  E-value=1e-15  Score=129.73  Aligned_cols=145  Identities=22%  Similarity=0.190  Sum_probs=72.5

Q ss_pred             CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCC---------
Q 048080            6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIP---------   76 (223)
Q Consensus         6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------   76 (223)
                      ++.+++|++|++++|.+. .+|   +..++.|++|++++|.+++. +  +..+++|++|++++|.+++...         
T Consensus        81 ~~~l~~L~~L~Ls~N~l~-~~~---~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L  153 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEIDVSHNTQLTEL  153 (457)
T ss_dssp             CTTCTTCSEEECCSSCCS-CCC---CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEE
T ss_pred             cccCCCCCEEECcCCCCc-eee---cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccceeccccCCcCCEE
Confidence            555566666666666665 333   33444555566666655542 2  4555555555555555543210         


Q ss_pred             ----------ccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCccc
Q 048080           77 ----------TTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGK  146 (223)
Q Consensus        77 ----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~  146 (223)
                                -.+..+++|+.|++++|++++ +|  +..+++|+.|++++|.+++.   .+..+++|+.|++++|++++ 
T Consensus       154 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-  226 (457)
T 3bz5_A          154 DCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-  226 (457)
T ss_dssp             ECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-
T ss_pred             ECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-
Confidence                      023344555555555555553 22  44445555555555555533   14455555555555555554 


Q ss_pred             CCchhhhcCCcceeecCCC
Q 048080          147 VPIEAIFNSTKGISLVGNE  165 (223)
Q Consensus       147 ~~~~~~~~~l~~l~~~~n~  165 (223)
                      +| ......++.+++++|.
T Consensus       227 ip-~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          227 ID-VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             CC-CTTCTTCSEEECCSSC
T ss_pred             cC-ccccCCCCEEEeeCCc
Confidence            33 2334445555555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.67  E-value=2.2e-16  Score=129.40  Aligned_cols=161  Identities=17%  Similarity=0.099  Sum_probs=124.5

Q ss_pred             CC-CCCCCCCCCCeeecccCccccCCChhhhhccCCce-EEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCc--
Q 048080            2 RP-PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSV-LLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT--   77 (223)
Q Consensus         2 ip-~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--   77 (223)
                      || .+|+++++|++|++++|++.+.+|.+.|..++.+. .+.+.+|.+....|..|..+++|++|++++|.+....+.  
T Consensus        45 i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~  124 (350)
T 4ay9_X           45 IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK  124 (350)
T ss_dssp             ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT
T ss_pred             cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhh
Confidence            55 47999999999999999997678888887766544 577788999988899999999999999999988754332  


Q ss_pred             -----------------------cccCCC-CCcEEEcccCcccccCCccccCCCCCCEEECCC-CccccccchhhhCCCC
Q 048080           78 -----------------------TLGGCT-SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR-NNLSGHIPQYLENLSF  132 (223)
Q Consensus        78 -----------------------~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~  132 (223)
                                             .|..+. .++.|++++|+++...+..| ...+|+.+++++ |.++.+.+++|..+++
T Consensus       125 ~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~  203 (350)
T 4ay9_X          125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASG  203 (350)
T ss_dssp             CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEEC
T ss_pred             cccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcc
Confidence                                   223332 57889999999996655555 456899999975 7777666678899999


Q ss_pred             CCEEeccCCcCcccCCchhhhcCCcceeecCCC
Q 048080          133 LSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNE  165 (223)
Q Consensus       133 L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~  165 (223)
                      |+.|++++|+++.. |. ..+..+..+...++.
T Consensus       204 L~~LdLs~N~l~~l-p~-~~~~~L~~L~~l~~~  234 (350)
T 4ay9_X          204 PVILDISRTRIHSL-PS-YGLENLKKLRARSTY  234 (350)
T ss_dssp             CSEEECTTSCCCCC-CS-SSCTTCCEEECTTCT
T ss_pred             cchhhcCCCCcCcc-Ch-hhhccchHhhhccCC
Confidence            99999999999954 43 235666666655543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.67  E-value=1.6e-17  Score=136.76  Aligned_cols=162  Identities=22%  Similarity=0.219  Sum_probs=85.1

Q ss_pred             CCCCC-CCCeeecccCccccCCChhhhhc----cCCceEEEccCCcccccCCcC----CCCC-CCCCeEeccCccccccC
Q 048080            6 LGNCQ-NLILLTTCKNKLSGTVPRQLLRI----ITRSVLLDLFDNLLSGHFPAE----VGNL-KHLVSLDISSNMFSGEI   75 (223)
Q Consensus         6 ~~~l~-~L~~L~l~~n~i~~~~p~~~~~~----~~~l~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~l~~~~   75 (223)
                      |.+++ +|++|++++|.+.+..+..+...    .+.|++|++++|.+++..+..    +..+ ++|++|++++|.+++..
T Consensus        46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  125 (362)
T 3goz_A           46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS  125 (362)
T ss_dssp             HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence            34444 55556666655553323322222    144556666666555443332    2222 56666666666665444


Q ss_pred             Cccc----cC-CCCCcEEEcccCcccccCC----ccccCCC-CCCEEECCCCccccccchhh----hCC-CCCCEEeccC
Q 048080           76 PTTL----GG-CTSLEHLSMQDNSFTGSIP----STLSSLK-SITELDLSRNNLSGHIPQYL----ENL-SFLSFLNLSY  140 (223)
Q Consensus        76 ~~~~----~~-l~~L~~L~L~~N~l~~~~~----~~~~~l~-~L~~L~L~~N~l~~~~p~~~----~~l-~~L~~l~l~~  140 (223)
                      +..+    .. ..+|++|++++|.+++..+    ..+..++ +|++|+|++|.+++..+..+    ... ++|+.|++++
T Consensus       126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  205 (362)
T 3goz_A          126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA  205 (362)
T ss_dssp             HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence            4332    22 2466666666666664222    2233443 67777777777765555433    334 4777777777


Q ss_pred             CcCcccCCc----h-hh-hcCCcceeecCCCCC
Q 048080          141 NHFEGKVPI----E-AI-FNSTKGISLVGNENL  167 (223)
Q Consensus       141 N~l~~~~~~----~-~~-~~~l~~l~~~~n~~~  167 (223)
                      |.+......    . .. ...++.+++++|...
T Consensus       206 N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          206 NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             SCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             CCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence            777652211    1 11 236777888877653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.66  E-value=1.3e-17  Score=135.57  Aligned_cols=161  Identities=18%  Similarity=0.217  Sum_probs=108.6

Q ss_pred             CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCC-ccccc-CCcCCCCCCCCCeEeccCc-ccccc-CCcc
Q 048080            3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDN-LLSGH-FPAEVGNLKHLVSLDISSN-MFSGE-IPTT   78 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~   78 (223)
                      |..+..+++|++|++++|.+.+..+..+.. .+.|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..
T Consensus       111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  189 (336)
T 2ast_B          111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA  189 (336)
T ss_dssp             HHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred             HHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence            445677888888888888877555554443 667788888888 56642 4455667788888888888 77653 3555


Q ss_pred             ccCCC-CCcEEEcccC--ccc-ccCCccccCCCCCCEEECCCCc-cccccchhhhCCCCCCEEeccCCc-Cccc-CCchh
Q 048080           79 LGGCT-SLEHLSMQDN--SFT-GSIPSTLSSLKSITELDLSRNN-LSGHIPQYLENLSFLSFLNLSYNH-FEGK-VPIEA  151 (223)
Q Consensus        79 ~~~l~-~L~~L~L~~N--~l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~l~l~~N~-l~~~-~~~~~  151 (223)
                      +..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +... .....
T Consensus       190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~  269 (336)
T 2ast_B          190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG  269 (336)
T ss_dssp             HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred             HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh
Confidence            67777 8888888888  444 3455566677788888888887 666666677777888888888874 2211 00123


Q ss_pred             hhcCCcceeecCC
Q 048080          152 IFNSTKGISLVGN  164 (223)
Q Consensus       152 ~~~~l~~l~~~~n  164 (223)
                      ....++.+++.++
T Consensus       270 ~~~~L~~L~l~~~  282 (336)
T 2ast_B          270 EIPTLKTLQVFGI  282 (336)
T ss_dssp             GCTTCCEEECTTS
T ss_pred             cCCCCCEEeccCc
Confidence            3556666666655

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.66  E-value=6.9e-19  Score=133.07  Aligned_cols=139  Identities=19%  Similarity=0.226  Sum_probs=113.9

Q ss_pred             CCCCCCCCeeecccCccccCCCh-----hhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080            6 LGNCQNLILLTTCKNKLSGTVPR-----QLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG   80 (223)
Q Consensus         6 ~~~l~~L~~L~l~~n~i~~~~p~-----~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   80 (223)
                      +.....++.++++.+.+.+.+|.     ..+...+.|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            34456777888888888777665     234556777999999999996 55 8888999999999999998 5677777


Q ss_pred             CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccc-hhhhCCCCCCEEeccCCcCcccCCc
Q 048080           81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFEGKVPI  149 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~~~~  149 (223)
                      .+++|+.|++++|++++ +| .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|++.+.+|.
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            78999999999999996 44 58888999999999999996443 5788999999999999999887654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.65  E-value=2.1e-16  Score=133.87  Aligned_cols=97  Identities=25%  Similarity=0.338  Sum_probs=59.7

Q ss_pred             CCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEec
Q 048080           59 KHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNL  138 (223)
Q Consensus        59 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l  138 (223)
                      ++|++|++++|.+++ .| .|..+++|++|++++|++++ +|..+   ++|++|++++|.+++ +| .+..+++|+.|++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            456666666666664 34 36666667777777776663 34322   366777777777764 34 4677777777777


Q ss_pred             cCCcCcccCCchhhhcCCcceeecCCCC
Q 048080          139 SYNHFEGKVPIEAIFNSTKGISLVGNEN  166 (223)
Q Consensus       139 ~~N~l~~~~~~~~~~~~l~~l~~~~n~~  166 (223)
                      ++|.+.+ +|.  ....++.+++++|..
T Consensus       203 ~~N~l~~-l~~--~~~~L~~L~l~~n~l  227 (454)
T 1jl5_A          203 DNNSLKK-LPD--LPLSLESIVAGNNIL  227 (454)
T ss_dssp             CSSCCSS-CCC--CCTTCCEEECCSSCC
T ss_pred             CCCcCCc-CCC--CcCcccEEECcCCcC
Confidence            7777765 221  124666677766643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.65  E-value=1.7e-18  Score=130.91  Aligned_cols=136  Identities=20%  Similarity=0.163  Sum_probs=114.3

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG   81 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   81 (223)
                      ||.+|+.+++|++|++++|.+. .+|  .+...+.|++|++++|.++ .+|..+..+++|++|++++|.+++. | .+..
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~  113 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEK  113 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHH
T ss_pred             hhHHHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-cccc
Confidence            3448899999999999999998 688  4556677899999999999 5677777789999999999999964 3 6888


Q ss_pred             CCCCcEEEcccCcccccCC-ccccCCCCCCEEECCCCccccccch----------hhhCCCCCCEEeccCCcCcc
Q 048080           82 CTSLEHLSMQDNSFTGSIP-STLSSLKSITELDLSRNNLSGHIPQ----------YLENLSFLSFLNLSYNHFEG  145 (223)
Q Consensus        82 l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~----------~~~~l~~L~~l~l~~N~l~~  145 (223)
                      +++|+.|++++|.+++..+ ..+..+++|++|++++|.+++..|.          .+..+++|+.||  +|+++.
T Consensus       114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            9999999999999995433 4688999999999999999877664          378899999987  677664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.64  E-value=2.2e-17  Score=136.94  Aligned_cols=107  Identities=20%  Similarity=0.180  Sum_probs=55.9

Q ss_pred             CCCCeEeccCcccc-ccCC---ccccCCCCCcEEEcccCcccc-----cCCccccCCCCCCEEECCCCccc----cccch
Q 048080           59 KHLVSLDISSNMFS-GEIP---TTLGGCTSLEHLSMQDNSFTG-----SIPSTLSSLKSITELDLSRNNLS----GHIPQ  125 (223)
Q Consensus        59 ~~L~~L~l~~n~l~-~~~~---~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~----~~~p~  125 (223)
                      ++|++|++++|.++ ...+   ..+..+++|+.|++++|.++.     ..+..+..+++|++|+|++|.++    +.+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            45555555555544 1122   234445556666666665551     22334555666666666666664    34555


Q ss_pred             hhhCCCCCCEEeccCCcCccc----CCch-h--hhcCCcceeecCCC
Q 048080          126 YLENLSFLSFLNLSYNHFEGK----VPIE-A--IFNSTKGISLVGNE  165 (223)
Q Consensus       126 ~~~~l~~L~~l~l~~N~l~~~----~~~~-~--~~~~l~~l~~~~n~  165 (223)
                      .+..+++|+.|++++|.+++.    ++.. .  ....++.+++++|.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence            566666666666666666543    1111 0  13455666666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.64  E-value=6.1e-17  Score=133.26  Aligned_cols=62  Identities=23%  Similarity=0.261  Sum_probs=26.3

Q ss_pred             CceEEEccCCcccccCCcCCCCC-----CCCCeEeccCccccccCCccc----cCC-CCCcEEEcccCcccc
Q 048080           36 RSVLLDLFDNLLSGHFPAEVGNL-----KHLVSLDISSNMFSGEIPTTL----GGC-TSLEHLSMQDNSFTG   97 (223)
Q Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~L~~N~l~~   97 (223)
                      .|++|++++|.+.+..+..+..+     ++|++|++++|.+++..+..+    ..+ ++|+.|++++|.+++
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  123 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS  123 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence            34444444444443333333332     444444444444443333322    222 444444444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.62  E-value=7.9e-15  Score=124.25  Aligned_cols=126  Identities=25%  Similarity=0.329  Sum_probs=78.0

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG   81 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   81 (223)
                      || +|+++++|++|++++|++. .+|..    ...|++|++++|.+++ .| .|..+++|++|++++|.+++ .|..   
T Consensus       146 lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---  213 (454)
T 1jl5_A          146 LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---  213 (454)
T ss_dssp             CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---
T ss_pred             Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---
Confidence            45 4777777777777777776 56643    2356777777777775 44 46777777777777777764 2322   


Q ss_pred             CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcc
Q 048080           82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG  145 (223)
Q Consensus        82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~  145 (223)
                      .++|+.|++++|.++ .+|+ +..+++|++|++++|++++ +|..   +++|+.|++++|.+.+
T Consensus       214 ~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          214 PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD  271 (454)
T ss_dssp             CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC
T ss_pred             cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc
Confidence            146666666666666 4453 6666667777777776664 2321   2445555555555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.60  E-value=1.8e-15  Score=123.65  Aligned_cols=132  Identities=17%  Similarity=0.110  Sum_probs=104.4

Q ss_pred             CeeecccC-ccccCCChhhhhccCCceEEEccC-CcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEc
Q 048080           13 ILLTTCKN-KLSGTVPRQLLRIITRSVLLDLFD-NLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSM   90 (223)
Q Consensus        13 ~~L~l~~n-~i~~~~p~~~~~~~~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L   90 (223)
                      ..++.+++ +++ .+|.  +...+.|++|+|++ |.+.+..+..|.++++|++|+|++|.++++.|..|.++++|+.|+|
T Consensus        11 ~~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            45788888 898 8998  45566789999996 9999888899999999999999999999999999999999999999


Q ss_pred             ccCcccccCCccccCCCCCCEEECCCCccccccc-hhhhCCCCCCEEeccCCcCcccCC
Q 048080           91 QDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFEGKVP  148 (223)
Q Consensus        91 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~~~  148 (223)
                      ++|+|++..+..|..++ |+.|+|.+|.+..... ..|..+.......+..+.+.|..|
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~  145 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ  145 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence            99999987777777776 9999999999984332 223322222223344455665544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.57  E-value=1.9e-16  Score=133.89  Aligned_cols=119  Identities=22%  Similarity=0.248  Sum_probs=68.4

Q ss_pred             CCCCCCCCCCCeeecccCccccCCChhhhhccC----CceEEEccCCcccc----cCCcCCCCCCCCCeEeccCcccccc
Q 048080            3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIIT----RSVLLDLFDNLLSG----HFPAEVGNLKHLVSLDISSNMFSGE   74 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~----~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~   74 (223)
                      |+.+..+++|++|++++|.+.+..+..++....    .|++|++++|.+..    .++..+..+++|++|++++|.+++.
T Consensus        49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  128 (461)
T 1z7x_W           49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA  128 (461)
T ss_dssp             HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred             HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence            344556677777777777776434444444444    46777777777763    3456667777777777777776543


Q ss_pred             CCccc-----cCCCCCcEEEcccCcccccC----CccccCCCCCCEEECCCCcccc
Q 048080           75 IPTTL-----GGCTSLEHLSMQDNSFTGSI----PSTLSSLKSITELDLSRNNLSG  121 (223)
Q Consensus        75 ~~~~~-----~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~  121 (223)
                      .+..+     ...++|++|++++|.+++..    +..+..+++|++|++++|.+++
T Consensus       129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  184 (461)
T 1z7x_W          129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE  184 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence            33222     12345666666666555422    3333444555555555555543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.57  E-value=3.8e-14  Score=124.18  Aligned_cols=61  Identities=25%  Similarity=0.325  Sum_probs=37.9

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccc
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSG   73 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~   73 (223)
                      ||..+.  ++|++|++++|.++ .+|.    .++.|++|++++|.++. +|.   .+++|++|++++|.+++
T Consensus        55 lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~  115 (622)
T 3g06_A           55 LPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH  115 (622)
T ss_dssp             CCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC
T ss_pred             cChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC
Confidence            565554  66777777777776 6665    34556777777777663 333   44566666666666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.57  E-value=3.8e-14  Score=124.22  Aligned_cols=75  Identities=27%  Similarity=0.339  Sum_probs=35.6

Q ss_pred             CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc-hhhhcCCcceee
Q 048080           83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI-EAIFNSTKGISL  161 (223)
Q Consensus        83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~l~~l~~  161 (223)
                      ++|+.|++++|.+++ +|   ..+++|+.|++++|.++ .+|.   .+++|+.|++++|.++ .+|. ......+..+++
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            344555555555542 22   22344555555555555 2232   3445555555555555 2232 233444555555


Q ss_pred             cCCCC
Q 048080          162 VGNEN  166 (223)
Q Consensus       162 ~~n~~  166 (223)
                      .+|+.
T Consensus       292 ~~N~l  296 (622)
T 3g06_A          292 EGNPL  296 (622)
T ss_dssp             CSCCC
T ss_pred             cCCCC
Confidence            55554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.56  E-value=6.8e-17  Score=136.58  Aligned_cols=86  Identities=19%  Similarity=0.060  Sum_probs=39.8

Q ss_pred             CCCCeeecccCccccC----CChhhhhccCCceEEEccCCcccccC-----CcCCCCCCCCCeEeccCcccccc----CC
Q 048080           10 QNLILLTTCKNKLSGT----VPRQLLRIITRSVLLDLFDNLLSGHF-----PAEVGNLKHLVSLDISSNMFSGE----IP   76 (223)
Q Consensus        10 ~~L~~L~l~~n~i~~~----~p~~~~~~~~~l~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~----~~   76 (223)
                      ++|++|++++|.+.+.    ++.. +...+.|++|++++|.+....     +..+..+++|++|++++|.++..    .+
T Consensus       199 ~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  277 (461)
T 1z7x_W          199 CQLEALKLESCGVTSDNCRDLCGI-VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC  277 (461)
T ss_dssp             CCCCEEECTTSCCBTTHHHHHHHH-HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             CCceEEEccCCCCcHHHHHHHHHH-HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence            4555666666655521    2221 223344455555555554321     11222345555555555555432    23


Q ss_pred             ccccCCCCCcEEEcccCccc
Q 048080           77 TTLGGCTSLEHLSMQDNSFT   96 (223)
Q Consensus        77 ~~~~~l~~L~~L~L~~N~l~   96 (223)
                      ..+..+++|++|++++|.++
T Consensus       278 ~~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          278 RVLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             HHHHHCTTCCEEECTTCCCH
T ss_pred             HHHhhCCCcceEECCCCCCc
Confidence            33444555555555555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=1.1e-13  Score=112.36  Aligned_cols=56  Identities=7%  Similarity=0.106  Sum_probs=41.4

Q ss_pred             CCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEec
Q 048080            9 CQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDI   66 (223)
Q Consensus         9 l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l   66 (223)
                      +++|+.|++.+ .+. .+++..|...+.|+++++.+|.+..+.+.+|.++.++..+..
T Consensus       100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~  155 (329)
T 3sb4_A          100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPL  155 (329)
T ss_dssp             CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECT
T ss_pred             cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecC
Confidence            89999999988 787 888888888888899999988876555555555444444433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=1e-13  Score=112.55  Aligned_cols=140  Identities=14%  Similarity=0.109  Sum_probs=104.2

Q ss_pred             CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcc----cccCCcCC------------------------
Q 048080            4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLL----SGHFPAEV------------------------   55 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l----~~~~~~~~------------------------   55 (223)
                      .+|.++++|+.+++.+|.+. .+++..|.....+..+.+..+..    ....+.+|                        
T Consensus       118 ~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~  196 (329)
T 3sb4_A          118 AAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMK  196 (329)
T ss_dssp             TTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHH
T ss_pred             HHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhh
Confidence            57999999999999999987 78887777665556555544221    00011111                        


Q ss_pred             --------------------------CCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCC
Q 048080           56 --------------------------GNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSI  109 (223)
Q Consensus        56 --------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  109 (223)
                                                ..+++|+.+++++|.++.+.+.+|.++.+|+.+++.+| ++.+.+.+|.++++|
T Consensus       197 ~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L  275 (329)
T 3sb4_A          197 AGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRL  275 (329)
T ss_dssp             TTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             cccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhc
Confidence                                      02678888888888888777778888888888888887 776777788888888


Q ss_pred             C-EEECCCCccccccchhhhCCCCCCEEeccCCcCccc
Q 048080          110 T-ELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGK  146 (223)
Q Consensus       110 ~-~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~  146 (223)
                      + .+++.+ .++.+.+.+|..+++|+.+++++|.+...
T Consensus       276 ~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I  312 (329)
T 3sb4_A          276 AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL  312 (329)
T ss_dssp             CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred             cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc
Confidence            8 888887 67767778888888888888888887743

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.42  E-value=3.3e-14  Score=117.44  Aligned_cols=157  Identities=17%  Similarity=0.128  Sum_probs=83.5

Q ss_pred             CCCCeeecccCccccCCChhhhhc----cCCceEEEccCCcccccCCcCC-CCCCCCCeEeccCccccccCCccc-----
Q 048080           10 QNLILLTTCKNKLSGTVPRQLLRI----ITRSVLLDLFDNLLSGHFPAEV-GNLKHLVSLDISSNMFSGEIPTTL-----   79 (223)
Q Consensus        10 ~~L~~L~l~~n~i~~~~p~~~~~~----~~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~-----   79 (223)
                      +.|+.|++++|.+...-...+...    ...|++|+|++|.+.......+ ..+++|++|+|++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            456677777777652222222211    2456677777776653222222 234566677777776654333332     


Q ss_pred             cCCCCCcEEEcccCccccc----CCccccCCCCCCEEECCCCccccc----cchhhhCCCCCCEEeccCCcCcccCCc--
Q 048080           80 GGCTSLEHLSMQDNSFTGS----IPSTLSSLKSITELDLSRNNLSGH----IPQYLENLSFLSFLNLSYNHFEGKVPI--  149 (223)
Q Consensus        80 ~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~l~l~~N~l~~~~~~--  149 (223)
                      ...++|+.|+|++|.++..    ++..+...++|++|+|++|.++..    ++..+...++|+.|++++|.++.....  
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            2345667777777766532    223345566677777777766542    234455566677777777766532111  


Q ss_pred             ---hhhhcCCcceeecCCCC
Q 048080          150 ---EAIFNSTKGISLVGNEN  166 (223)
Q Consensus       150 ---~~~~~~l~~l~~~~n~~  166 (223)
                         ......++.+++++|+.
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSC
T ss_pred             HHHHHhCCCCCEEeccCCCC
Confidence               01234566666666653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.38  E-value=4e-14  Score=116.93  Aligned_cols=137  Identities=20%  Similarity=0.260  Sum_probs=107.4

Q ss_pred             CCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCC-----CCCCCCCeEeccCcccccc----CCccc
Q 048080            9 CQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-----GNLKHLVSLDISSNMFSGE----IPTTL   79 (223)
Q Consensus         9 l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~   79 (223)
                      .++|+.|++++|.+.+.....+...+..|+.|+|++|.++......+     ...++|++|+|++|.++..    ++..+
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            36899999999999754444555566778999999999975443333     3467899999999999753    33345


Q ss_pred             cCCCCCcEEEcccCcccccC----CccccCCCCCCEEECCCCccccc----cchhhhCCCCCCEEeccCCcCcc
Q 048080           80 GGCTSLEHLSMQDNSFTGSI----PSTLSSLKSITELDLSRNNLSGH----IPQYLENLSFLSFLNLSYNHFEG  145 (223)
Q Consensus        80 ~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~l~l~~N~l~~  145 (223)
                      ..+++|++|+|++|.++...    +..+...++|+.|+|++|.++..    +...+...++|+.|++++|.++.
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            77899999999999998532    45677788999999999999864    34456677999999999999875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.28  E-value=5.6e-11  Score=99.02  Aligned_cols=157  Identities=13%  Similarity=0.097  Sum_probs=102.0

Q ss_pred             CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCc--------------
Q 048080            4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSN--------------   69 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n--------------   69 (223)
                      .+|.+|++|+.+++.+|++. .++...|.. ..|+.+.+.++ +..+...+|.++++|+.+++..|              
T Consensus       174 ~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~-~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L  250 (401)
T 4fdw_A          174 DIFYYCYNLKKADLSKTKIT-KLPASTFVY-AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGI  250 (401)
T ss_dssp             STTTTCTTCCEEECTTSCCS-EECTTTTTT-CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCC
T ss_pred             HHhhCcccCCeeecCCCcce-EechhhEee-cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCc
Confidence            57889999999999998888 888888874 56688888754 66567777888888887777653              


Q ss_pred             -------cccccCCccccCCCCCcEEEcccCccc-----ccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEe
Q 048080           70 -------MFSGEIPTTLGGCTSLEHLSMQDNSFT-----GSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLN  137 (223)
Q Consensus        70 -------~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~  137 (223)
                             .++.+...+|.++.+|+.+++.+|.+.     ...+.+|.++++|+.+++. +.++.+...+|..+.+|+.++
T Consensus       251 ~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~  329 (401)
T 4fdw_A          251 TTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLT  329 (401)
T ss_dssp             SEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEE
T ss_pred             cEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEE
Confidence                   222333455666666777766666543     3445566667777777776 346655566677777777777


Q ss_pred             ccCCcCcccCCchhhhcCCcceeecCCC
Q 048080          138 LSYNHFEGKVPIEAIFNSTKGISLVGNE  165 (223)
Q Consensus       138 l~~N~l~~~~~~~~~~~~l~~l~~~~n~  165 (223)
                      +..| +...-........++.+.+.+|.
T Consensus       330 lp~~-l~~I~~~aF~~~~L~~l~l~~n~  356 (401)
T 4fdw_A          330 IPAN-VTQINFSAFNNTGIKEVKVEGTT  356 (401)
T ss_dssp             ECTT-CCEECTTSSSSSCCCEEEECCSS
T ss_pred             ECcc-ccEEcHHhCCCCCCCEEEEcCCC
Confidence            7544 33211111111256667776664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.20  E-value=1.1e-10  Score=97.25  Aligned_cols=135  Identities=15%  Similarity=0.124  Sum_probs=113.1

Q ss_pred             CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcccc-----ccCCcc
Q 048080            4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFS-----GEIPTT   78 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~   78 (223)
                      .+|.++++|+.+++..+ +. .++...|.. ..|+.+.+. +.+..+...+|.++++|+.+.+.+|.+.     .+.+..
T Consensus       220 ~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a  295 (401)
T 4fdw_A          220 QAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC  295 (401)
T ss_dssp             TTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred             hHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence            57788888888888875 55 788888887 567888884 4566677899999999999999988765     467788


Q ss_pred             ccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcc
Q 048080           79 LGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG  145 (223)
Q Consensus        79 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~  145 (223)
                      |.++.+|+.+++. +.++.....+|.++++|+.+++..| ++.+...+|..+ +|+.+++.+|....
T Consensus       296 F~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          296 LEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             TTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred             hhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence            9999999999999 5588777889999999999999665 776778899999 99999999997763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.19  E-value=5.8e-12  Score=109.51  Aligned_cols=132  Identities=14%  Similarity=0.069  Sum_probs=92.3

Q ss_pred             CCCCCCeeecccCccccCCChhhhhcc-CCceEEEccCCcc-cc-cCCcCCCCCCCCCeEeccCccccccCC----cccc
Q 048080            8 NCQNLILLTTCKNKLSGTVPRQLLRII-TRSVLLDLFDNLL-SG-HFPAEVGNLKHLVSLDISSNMFSGEIP----TTLG   80 (223)
Q Consensus         8 ~l~~L~~L~l~~n~i~~~~p~~~~~~~-~~l~~L~L~~n~l-~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~   80 (223)
                      .+++|++|++++|.+.+..+..+.... ..|++|++++|.. .. ..+.....+++|++|++++|.+++...    ..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            678899999999888755555454433 3378999988862 11 111222367889999999998876532    2345


Q ss_pred             CCCCCcEEEcccCccc----ccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccC
Q 048080           81 GCTSLEHLSMQDNSFT----GSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSY  140 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~  140 (223)
                      .+++|+.|++++|.++    +.++..+..+++|+.|++++|.+.+ +|..+..+++|+.++++.
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECB
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccc
Confidence            6788999999998886    2334445677889999999988875 566677777777777764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.17  E-value=2.3e-12  Score=111.99  Aligned_cols=133  Identities=13%  Similarity=0.128  Sum_probs=65.4

Q ss_pred             ccCCceEEEccCCcccccCCcCCCC-CCCCCeEecc----Ccccccc-----CCccccCCCCCcEEEcccC--cccccCC
Q 048080           33 IITRSVLLDLFDNLLSGHFPAEVGN-LKHLVSLDIS----SNMFSGE-----IPTTLGGCTSLEHLSMQDN--SFTGSIP  100 (223)
Q Consensus        33 ~~~~l~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~L~~N--~l~~~~~  100 (223)
                      ..+.|++|+++.|.+++.....+.. +++|++|+++    .|.+++.     .+..+.++++|+.|+++++  .+++..+
T Consensus       376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~  455 (592)
T 3ogk_B          376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL  455 (592)
T ss_dssp             HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred             hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence            3444455555555544333333322 4555565554    3444432     1112344556666666532  2333322


Q ss_pred             cccc-CCCCCCEEECCCCccccc-cchhhhCCCCCCEEeccCCcCcccCCc--hhhhcCCcceeecCCC
Q 048080          101 STLS-SLKSITELDLSRNNLSGH-IPQYLENLSFLSFLNLSYNHFEGKVPI--EAIFNSTKGISLVGNE  165 (223)
Q Consensus       101 ~~~~-~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~l~l~~N~l~~~~~~--~~~~~~l~~l~~~~n~  165 (223)
                      ..+. .+++|++|++++|.+++. .+..+..+++|+.|++++|+++.....  ......++.+++++|.
T Consensus       456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence            2222 356666666666666642 334445666677777776665432111  1234556666666665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.01  E-value=5.2e-11  Score=103.47  Aligned_cols=86  Identities=14%  Similarity=0.169  Sum_probs=49.0

Q ss_pred             ccCCCCCcEEEcccCcccccCCccccC-CCCCCEEECCCCccccccchhh-hCCCCCCEEeccCCcCcccCCc--hhhhc
Q 048080           79 LGGCTSLEHLSMQDNSFTGSIPSTLSS-LKSITELDLSRNNLSGHIPQYL-ENLSFLSFLNLSYNHFEGKVPI--EAIFN  154 (223)
Q Consensus        79 ~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~l~l~~N~l~~~~~~--~~~~~  154 (223)
                      +..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|+++.....  .....
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence            34455666666655 444333333333 5667777777777765544444 5577777777777777432211  12345


Q ss_pred             CCcceeecCCC
Q 048080          155 STKGISLVGNE  165 (223)
Q Consensus       155 ~l~~l~~~~n~  165 (223)
                      .++.+++.+|+
T Consensus       507 ~L~~L~l~~~~  517 (594)
T 2p1m_B          507 TMRSLWMSSCS  517 (594)
T ss_dssp             GSSEEEEESSC
T ss_pred             CCCEEeeeCCC
Confidence            66777776664

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.94  E-value=3.9e-10  Score=97.96  Aligned_cols=131  Identities=15%  Similarity=0.117  Sum_probs=74.8

Q ss_pred             CCCCCCeeecccCccccCCChhhhhccCCceEEEccCC-ccccc-CCcCCCCCCCCCeEeccCccccccCCcccc----C
Q 048080            8 NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDN-LLSGH-FPAEVGNLKHLVSLDISSNMFSGEIPTTLG----G   81 (223)
Q Consensus         8 ~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~   81 (223)
                      .+++|++|++++|.+.+..+..+....+.|++|++++| .+... .+..+..+++|++|++++|.+++..+..+.    .
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            45677777777777765555444444566777777777 44321 223333567777777777776654444333    4


Q ss_pred             CCCCcEEEcccCc--ccc-cCCccccCCCCCCEEECCCC-ccccccchhhhCCCCCCEEecc
Q 048080           82 CTSLEHLSMQDNS--FTG-SIPSTLSSLKSITELDLSRN-NLSGHIPQYLENLSFLSFLNLS  139 (223)
Q Consensus        82 l~~L~~L~L~~N~--l~~-~~~~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~l~l~  139 (223)
                      +++|+.|++++|.  ++. .++.....+++|++|++++| .+. .++..+..+++|+.|+++
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~  243 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTG  243 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECS
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccc
Confidence            5577777777775  221 11111234577777777776 333 244555555555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.88  E-value=1.2e-10  Score=91.46  Aligned_cols=67  Identities=21%  Similarity=0.246  Sum_probs=45.7

Q ss_pred             cCCCCCcEEEcccCcccc--cCCccccCCCCCCEEECCCCccccccchhhhCCC--CCCEEeccCCcCcccCC
Q 048080           80 GGCTSLEHLSMQDNSFTG--SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLS--FLSFLNLSYNHFEGKVP  148 (223)
Q Consensus        80 ~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~l~l~~N~l~~~~~  148 (223)
                      ..+++|+.|+|++|++++  .+++.+..+++|+.|+|++|++++.  ..+..+.  +|+.|++++|++++..|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            456778888888888776  3345566777888888888887755  2233333  77888888888776555

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.84  E-value=7.7e-10  Score=90.85  Aligned_cols=157  Identities=11%  Similarity=0.024  Sum_probs=88.2

Q ss_pred             CCCCCCCCCCeeecccCccc---------cCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcccccc
Q 048080            4 PSLGNCQNLILLTTCKNKLS---------GTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGE   74 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~---------~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~   74 (223)
                      ++...+++|+.|.+..+...         +.+. .+....+.|+.|++++|.-. ..+. +. +++|++|++..+.+...
T Consensus       133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~  208 (362)
T 2ra8_A          133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDS  208 (362)
T ss_dssp             TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHH
T ss_pred             HhhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChH
Confidence            34556778888887654321         0122 34455667788888877311 2222 32 67788888877776533


Q ss_pred             CCcccc--CCCCCcEEEccc--Cccccc-----CCccc--cCCCCCCEEECCCCccccccchhhh---CCCCCCEEeccC
Q 048080           75 IPTTLG--GCTSLEHLSMQD--NSFTGS-----IPSTL--SSLKSITELDLSRNNLSGHIPQYLE---NLSFLSFLNLSY  140 (223)
Q Consensus        75 ~~~~~~--~l~~L~~L~L~~--N~l~~~-----~~~~~--~~l~~L~~L~L~~N~l~~~~p~~~~---~l~~L~~l~l~~  140 (223)
                      ....+.  .+++|+.|+|+.  |...+.     +...+  ..+++|++|+|++|.+....+..+.   .+++|+.|+++.
T Consensus       209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~  288 (362)
T 2ra8_A          209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA  288 (362)
T ss_dssp             HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred             HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence            222332  577788877753  221111     01112  2467788888877777654433333   356778888887


Q ss_pred             CcCcccC----C-chhhhcCCcceeecCC
Q 048080          141 NHFEGKV----P-IEAIFNSTKGISLVGN  164 (223)
Q Consensus       141 N~l~~~~----~-~~~~~~~l~~l~~~~n  164 (223)
                      |.+...-    + ....+..++.+++..|
T Consensus       289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          289 GVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            7776521    1 1134556677777655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.80  E-value=1.1e-09  Score=81.61  Aligned_cols=111  Identities=16%  Similarity=0.168  Sum_probs=67.1

Q ss_pred             cCCceEEEccCC-ccccc----CCcCCCCCCCCCeEeccCccccccC----CccccCCCCCcEEEcccCccccc----CC
Q 048080           34 ITRSVLLDLFDN-LLSGH----FPAEVGNLKHLVSLDISSNMFSGEI----PTTLGGCTSLEHLSMQDNSFTGS----IP  100 (223)
Q Consensus        34 ~~~l~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~----~~  100 (223)
                      .+.|++|+|++| .+...    +...+...++|++|+|++|.+....    ...+...++|++|+|++|.++..    +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            455677777776 65532    2233445567777777777765422    22334456777777777777643    23


Q ss_pred             ccccCCCCCCEEEC--CCCccccc----cchhhhCCCCCCEEeccCCcCc
Q 048080          101 STLSSLKSITELDL--SRNNLSGH----IPQYLENLSFLSFLNLSYNHFE  144 (223)
Q Consensus       101 ~~~~~l~~L~~L~L--~~N~l~~~----~p~~~~~l~~L~~l~l~~N~l~  144 (223)
                      .++...++|++|+|  ++|.+...    +...+...+.|+.|++++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            44555667777777  66777643    2344555567777777777654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.79  E-value=9.7e-10  Score=86.31  Aligned_cols=96  Identities=23%  Similarity=0.287  Sum_probs=67.8

Q ss_pred             EEccCCccc---ccCCcCCCCCCCCCeEeccCcccccc--CCccccCCCCCcEEEcccCcccccCCccccCCC--CCCEE
Q 048080           40 LDLFDNLLS---GHFPAEVGNLKHLVSLDISSNMFSGE--IPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLK--SITEL  112 (223)
Q Consensus        40 L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~--~L~~L  112 (223)
                      ++++.|...   ...+-....+++|++|+|++|.++++  ++..+..+++|+.|+|++|++++.  ..+..+.  +|+.|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            566666433   21222224577899999999998874  345667889999999999999865  2233333  89999


Q ss_pred             ECCCCccccccc-------hhhhCCCCCCEEe
Q 048080          113 DLSRNNLSGHIP-------QYLENLSFLSFLN  137 (223)
Q Consensus       113 ~L~~N~l~~~~p-------~~~~~l~~L~~l~  137 (223)
                      +|++|.+.+..|       ..+..+|+|+.||
T Consensus       226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            999999986554       3477889999886

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.75  E-value=9.4e-09  Score=84.38  Aligned_cols=136  Identities=15%  Similarity=0.190  Sum_probs=91.3

Q ss_pred             CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCC--CCCCCCeEeccC--cccccc-----CC
Q 048080            6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVG--NLKHLVSLDISS--NMFSGE-----IP   76 (223)
Q Consensus         6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~--n~l~~~-----~~   76 (223)
                      +..+++|+.|++++|.-. .++.  .. .+.|+.|++..+.+.......+.  .+++|+.|+|+.  |...+.     +.
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HhcCCCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            456789999999887422 4444  22 66789999998887643322332  678999998853  221111     01


Q ss_pred             ccc--cCCCCCcEEEcccCcccccCCccc---cCCCCCCEEECCCCcccccc----chhhhCCCCCCEEeccCCcCcc
Q 048080           77 TTL--GGCTSLEHLSMQDNSFTGSIPSTL---SSLKSITELDLSRNNLSGHI----PQYLENLSFLSFLNLSYNHFEG  145 (223)
Q Consensus        77 ~~~--~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~l~l~~N~l~~  145 (223)
                      ..+  ..+++|+.|+|.+|.++...+..+   ..+++|++|+|+.|.+.+.-    +..+..+++|+.|++++|.++.
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            122  247899999999998875433333   25788999999999988643    3334567899999999998764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.71  E-value=1.7e-09  Score=80.50  Aligned_cols=116  Identities=16%  Similarity=0.157  Sum_probs=86.0

Q ss_pred             CCCCCCCCCeeecccC-ccccCCChhh---hhccCCceEEEccCCccccc----CCcCCCCCCCCCeEeccCcccccc--
Q 048080            5 SLGNCQNLILLTTCKN-KLSGTVPRQL---LRIITRSVLLDLFDNLLSGH----FPAEVGNLKHLVSLDISSNMFSGE--   74 (223)
Q Consensus         5 ~~~~l~~L~~L~l~~n-~i~~~~p~~~---~~~~~~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~--   74 (223)
                      .+...+.|++|++++| .+...--..+   ....+.|++|+|++|.+...    +...+...++|++|+|++|.|...  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3456789999999999 8863211222   22346789999999998743    233445568899999999999854  


Q ss_pred             --CCccccCCCCCcEEEc--ccCcccccC----CccccCCCCCCEEECCCCccc
Q 048080           75 --IPTTLGGCTSLEHLSM--QDNSFTGSI----PSTLSSLKSITELDLSRNNLS  120 (223)
Q Consensus        75 --~~~~~~~l~~L~~L~L--~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~  120 (223)
                        +...+...++|++|+|  ++|.++...    ...+...++|++|+|++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              3455677789999999  889998542    344556689999999999986

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.61  E-value=2.5e-07  Score=76.58  Aligned_cols=115  Identities=11%  Similarity=0.179  Sum_probs=77.8

Q ss_pred             CCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCcccc
Q 048080           25 TVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLS  104 (223)
Q Consensus        25 ~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  104 (223)
                      .+....|.....|+.+.+.++... ....+|.++.+|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.+...+|.
T Consensus       255 ~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~  331 (394)
T 4gt6_A          255 RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFA  331 (394)
T ss_dssp             EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred             EcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence            455566666667777777665544 556677777777777775 3455455667777777777777654 5545566777


Q ss_pred             CCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcC
Q 048080          105 SLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF  143 (223)
Q Consensus       105 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l  143 (223)
                      ++.+|+.+.+..+ ++.+-..+|.++.+|+.+++.++..
T Consensus       332 ~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          332 GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            7777777777544 5555566777777777777776643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.55  E-value=7.4e-07  Score=73.24  Aligned_cols=133  Identities=14%  Similarity=0.121  Sum_probs=96.1

Q ss_pred             CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCC
Q 048080            4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCT   83 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~   83 (223)
                      .++..+.+|+.+.+..+ +. .+....|.....|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +..+....|.++.
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~  286 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS  286 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred             cccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence            34556667777777554 33 566667777777788888766 55466677888888888888654 5546666788888


Q ss_pred             CCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCC
Q 048080           84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN  141 (223)
Q Consensus        84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N  141 (223)
                      +|+.+.+.++.++.....+|.++.+|+.+++..+ ++.+-..+|.++.+|+.+.+..+
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            8888888888787666778888888888888654 66566677888888888776543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.51  E-value=6.9e-07  Score=73.41  Aligned_cols=124  Identities=11%  Similarity=0.137  Sum_probs=103.9

Q ss_pred             CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCC
Q 048080            4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCT   83 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~   83 (223)
                      .+|.++..|+.+.+..+ +. .+....|.....++.+.+..+ +......+|.++.+|+.+.+.++.++.+...+|.++.
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~  310 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV  310 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred             ccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence            46788899999999876 66 788888988888899999765 5557778999999999999999999888888999999


Q ss_pred             CCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCC
Q 048080           84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF  132 (223)
Q Consensus        84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  132 (223)
                      +|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+-..+|.++..
T Consensus       311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          311 KLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence            9999999765 77677789999999999999765 66566677877653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.49  E-value=1e-06  Score=72.89  Aligned_cols=128  Identities=12%  Similarity=0.066  Sum_probs=76.5

Q ss_pred             CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCC
Q 048080            6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSL   85 (223)
Q Consensus         6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   85 (223)
                      |.++..|+.+.+..+..  .++...|.....++.+....+.   .....|..+.+|+.+.+..+ ++.+...+|.++.+|
T Consensus       249 f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L  322 (394)
T 4fs7_A          249 FYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL  322 (394)
T ss_dssp             TTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred             ccccccceeEEcCCCcc--eeeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCC
Confidence            34444444444444322  3444444444444444444332   23345666777777777654 554556677777777


Q ss_pred             cEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCC
Q 048080           86 EHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN  141 (223)
Q Consensus        86 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N  141 (223)
                      +.+++..+ ++.....+|.++.+|+.+++..| ++.+...+|.++.+|+.+++..+
T Consensus       323 ~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          323 VSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             CEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            77777643 55555667777777777777666 66566667777777777776543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.42  E-value=7.4e-07  Score=73.74  Aligned_cols=132  Identities=13%  Similarity=0.126  Sum_probs=87.1

Q ss_pred             CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccc------------
Q 048080            4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMF------------   71 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l------------   71 (223)
                      .+|.++++|+.+.+.. .++ .+++..|.....|+.+++.++ +..+...+|.++.+|+.+.+..+-.            
T Consensus        65 ~AF~~c~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~  141 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPS-TVR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDF  141 (394)
T ss_dssp             TTTTTCTTEEEEECCT-TCC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCC
T ss_pred             HHhhCCCCceEEEeCC-Ccc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccc
Confidence            4688899999999975 476 888888888888899999765 5556677888888887776654311            


Q ss_pred             ---------cccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccC
Q 048080           72 ---------SGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSY  140 (223)
Q Consensus        72 ---------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~  140 (223)
                               ..+...+|.++.+|+.+.+.++-.+ ....+|.++.+|+.+++..| ++.+...+|..+..|+.+.+..
T Consensus       142 ~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~  217 (394)
T 4fs7_A          142 KEITIPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN  217 (394)
T ss_dssp             SEEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred             cccccCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence                     1122345666677777777654332 55566667777777777655 4434455566666666555444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.36  E-value=3.1e-06  Score=69.98  Aligned_cols=89  Identities=11%  Similarity=0.171  Sum_probs=53.9

Q ss_pred             cCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhC
Q 048080           50 HFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLEN  129 (223)
Q Consensus        50 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  129 (223)
                      ....+|.++.+|+.+.+..+... +...+|.++..|+.+.+. +.++.....+|.++.+|+.+++..+ ++.+...+|.+
T Consensus       256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~  332 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG  332 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             cccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence            44556666667777766554332 555566666777776664 3444455556666667777776643 44455566666


Q ss_pred             CCCCCEEeccCC
Q 048080          130 LSFLSFLNLSYN  141 (223)
Q Consensus       130 l~~L~~l~l~~N  141 (223)
                      +.+|+.+.+..+
T Consensus       333 C~~L~~i~ip~s  344 (394)
T 4gt6_A          333 CEQLERIAIPSS  344 (394)
T ss_dssp             CTTCCEEEECTT
T ss_pred             CCCCCEEEECcc
Confidence            677777666443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.34  E-value=8.3e-07  Score=61.98  Aligned_cols=87  Identities=21%  Similarity=0.228  Sum_probs=59.5

Q ss_pred             cEEEcccCccc-ccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcce--eec
Q 048080           86 EHLSMQDNSFT-GSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGI--SLV  162 (223)
Q Consensus        86 ~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l--~~~  162 (223)
                      ..++.+++.++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|+.|++++|++.|.+...++...+...  ...
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~~   88 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAP   88 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSGG
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCccccc
Confidence            46778888876 24454332  36899999999999777788899999999999999999988765443332221  112


Q ss_pred             CCCCCCCCCCCC
Q 048080          163 GNENLCGGSRKS  174 (223)
Q Consensus       163 ~n~~~C~~~~~~  174 (223)
                      .....|..+...
T Consensus        89 ~~~~~C~~P~~l  100 (130)
T 3rfe_A           89 YRDLRCVAPPAL  100 (130)
T ss_dssp             GTTCBCCBSTTT
T ss_pred             ccCcEeCcChHH
Confidence            334567665443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.33  E-value=2.7e-07  Score=67.70  Aligned_cols=84  Identities=17%  Similarity=0.165  Sum_probs=56.3

Q ss_pred             CCCCeEeccCccccccCCccccCCCCCcEEEcccCc-ccccCCccccCC----CCCCEEECCCCc-cccccchhhhCCCC
Q 048080           59 KHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNS-FTGSIPSTLSSL----KSITELDLSRNN-LSGHIPQYLENLSF  132 (223)
Q Consensus        59 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~~  132 (223)
                      .+|+.||++++.++...-..+.++++|+.|+|+++. ++..--..+..+    ++|++|+|++|. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            457777777777765555556777788888888774 554333334443    368888888764 76554455677788


Q ss_pred             CCEEeccCCc
Q 048080          133 LSFLNLSYNH  142 (223)
Q Consensus       133 L~~l~l~~N~  142 (223)
                      |+.|++++++
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            8888888765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.12  E-value=5.5e-07  Score=66.02  Aligned_cols=86  Identities=12%  Similarity=0.055  Sum_probs=66.8

Q ss_pred             CCceEEEccCCcccccCCcCCCCCCCCCeEeccCcc-ccccCCccccCC----CCCcEEEcccCc-ccccCCccccCCCC
Q 048080           35 TRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNM-FSGEIPTTLGGC----TSLEHLSMQDNS-FTGSIPSTLSSLKS  108 (223)
Q Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~L~~N~-l~~~~~~~~~~l~~  108 (223)
                      ..|+.||++++.++..--..+.++++|++|+|++|. ++...-..+..+    ++|+.|+++++. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            356999999999876555567899999999999995 665444445554    479999999984 87654456788999


Q ss_pred             CCEEECCCCc-cc
Q 048080          109 ITELDLSRNN-LS  120 (223)
Q Consensus       109 L~~L~L~~N~-l~  120 (223)
                      |++|+++++. ++
T Consensus       141 L~~L~L~~c~~It  153 (176)
T 3e4g_A          141 LKYLFLSDLPGVK  153 (176)
T ss_dssp             CCEEEEESCTTCC
T ss_pred             CCEEECCCCCCCC
Confidence            9999999875 54

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.65  E-value=2.1e-05  Score=58.66  Aligned_cols=83  Identities=13%  Similarity=0.152  Sum_probs=40.3

Q ss_pred             CCCCeEeccCc-ccccc----CCccccCCCCCcEEEcccCcccccCC----ccccCCCCCCEEECCCCccccc----cch
Q 048080           59 KHLVSLDISSN-MFSGE----IPTTLGGCTSLEHLSMQDNSFTGSIP----STLSSLKSITELDLSRNNLSGH----IPQ  125 (223)
Q Consensus        59 ~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~----~p~  125 (223)
                      +.|++|+|++| .|...    +.+.+..-..|+.|+|++|.+...-.    +++..-+.|++|+|++|.|...    +-.
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            45555555553 44321    11223333556666666666553222    2223335566666666666532    223


Q ss_pred             hhhCCCCCCEEeccCC
Q 048080          126 YLENLSFLSFLNLSYN  141 (223)
Q Consensus       126 ~~~~l~~L~~l~l~~N  141 (223)
                      ++..-..|+.|++++|
T Consensus       121 aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HTTTTCCCSEEECCCC
T ss_pred             HHhhCCceeEEECCCC
Confidence            3444455666666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.64  E-value=0.00012  Score=50.95  Aligned_cols=37  Identities=22%  Similarity=0.314  Sum_probs=21.9

Q ss_pred             CCcEEEcccCcccccCCccccCCCCCCEEECCCCccc
Q 048080           84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS  120 (223)
Q Consensus        84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  120 (223)
                      +|+.|+|++|+|+...++.|..+++|+.|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4566666666666555555566666666666666553

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=97.24  E-value=0.00062  Score=37.32  Aligned_cols=10  Identities=30%  Similarity=0.434  Sum_probs=4.0

Q ss_pred             HHHHHhccCc
Q 048080          199 VVYGRRRRST  208 (223)
Q Consensus       199 ~~~~~~~~~~  208 (223)
                      ++|+|||+.+
T Consensus        32 ~~~~RRr~~~   41 (44)
T 2ks1_B           32 GLFMRRRHIV   41 (44)
T ss_dssp             HHHHHTTTCC
T ss_pred             HHHhhhhHhh
Confidence            3344444333

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.13  E-value=0.00023  Score=53.04  Aligned_cols=109  Identities=17%  Similarity=0.169  Sum_probs=75.0

Q ss_pred             cCCceEEEccCC-ccccc----CCcCCCCCCCCCeEeccCccccccCCcc----ccCCCCCcEEEcccCcccccC----C
Q 048080           34 ITRSVLLDLFDN-LLSGH----FPAEVGNLKHLVSLDISSNMFSGEIPTT----LGGCTSLEHLSMQDNSFTGSI----P  100 (223)
Q Consensus        34 ~~~l~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~----~  100 (223)
                      -+.|++|+|++| .|...    +...+..-+.|+.|+|++|.+.......    +..-..|+.|+|++|.|+..-    .
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            456799999985 76532    2344556678999999999998543333    334578999999999998532    2


Q ss_pred             ccccCCCCCCEEECCCC---ccccc----cchhhhCCCCCCEEeccCCc
Q 048080          101 STLSSLKSITELDLSRN---NLSGH----IPQYLENLSFLSFLNLSYNH  142 (223)
Q Consensus       101 ~~~~~l~~L~~L~L~~N---~l~~~----~p~~~~~l~~L~~l~l~~N~  142 (223)
                      +++..-+.|+.|+|++|   .+...    +...+..-+.|+.|+++.|.
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            34555677999999865   33322    34456666778888876543

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=96.77  E-value=0.0017  Score=35.40  Aligned_cols=10  Identities=20%  Similarity=0.308  Sum_probs=3.9

Q ss_pred             HHHHHhccCc
Q 048080          199 VVYGRRRRST  208 (223)
Q Consensus       199 ~~~~~~~~~~  208 (223)
                      ++|.|||+.+
T Consensus        32 ~~~~RRR~~~   41 (44)
T 2jwa_A           32 GILIKRRQQK   41 (44)
T ss_dssp             HHHHHHHCSC
T ss_pred             Hhheehhhhh
Confidence            3334444333

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=96.41  E-value=0.0049  Score=33.66  Aligned_cols=10  Identities=40%  Similarity=0.607  Sum_probs=4.0

Q ss_pred             HHHHHhccCc
Q 048080          199 VVYGRRRRST  208 (223)
Q Consensus       199 ~~~~~~~~~~  208 (223)
                      ++|+|||+.+
T Consensus        31 ~~~~RRRr~~   40 (44)
T 2l2t_A           31 AVYVRRKSIK   40 (44)
T ss_dssp             HHHHHTTCSS
T ss_pred             HHHhhhhhhh
Confidence            3344444433

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=95.23  E-value=0.016  Score=31.58  Aligned_cols=14  Identities=7%  Similarity=0.093  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHhccC
Q 048080          194 VVFFIVVYGRRRRS  207 (223)
Q Consensus       194 ~~~~~~~~~~~~~~  207 (223)
                      ++++++..++.+++
T Consensus        30 ~~~~~~RRR~~~~k   43 (44)
T 2jwa_A           30 VFGILIKRRQQKIR   43 (44)
T ss_dssp             HHHHHHHHHCSCCC
T ss_pred             HHHhheehhhhhcc
Confidence            33565555555444

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=86.96  E-value=2.3  Score=27.50  Aligned_cols=47  Identities=17%  Similarity=0.241  Sum_probs=28.2

Q ss_pred             cccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccC
Q 048080           46 LLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDN   93 (223)
Q Consensus        46 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N   93 (223)
                      .++.+...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.+...
T Consensus         7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            344445566666777777766654 44455566666666666666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	223
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.7 bits (177), Expect = 1e-15
 Identities = 39/159 (24%), Positives = 62/159 (38%), Gaps = 29/159 (18%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFP---------- 52
             +L +  NL  L    N++S   P   L  +T    L L  N +S   P          
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE---LKLGANQISNISPLAGLTALTNL 290

Query: 53  ----------AEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPST 102
                     + + NLK+L  L +  N  S   P  +   T L+ L   +N  +    S+
Sbjct: 291 ELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSS 346

Query: 103 LSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 141
           L++L +I  L    N +S   P  L NL+ ++ L L+  
Sbjct: 347 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.2 bits (134), Expect = 4e-10
 Identities = 38/159 (23%), Positives = 58/159 (36%), Gaps = 29/159 (18%)

Query: 7   GNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDI 66
               NL  L    N++S   P  +L  +     L L  N L       + +L +L  LD+
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDE---LSLNGNQLKD--IGTLASLTNLTDLDL 248

Query: 67  SSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSS--------------------L 106
           ++N  S   P  L G T L  L +  N  +   P    +                    L
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306

Query: 107 KSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 145
           K++T L L  NN+S   P  + +L+ L  L  + N    
Sbjct: 307 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 3e-07
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 56  GNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLS 115
             L +L SL  ++N  S   P  +   T+L+ LS+  N        TL+SL ++T+LDL+
Sbjct: 194 AKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 116 RNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI 149
            N +S   P  L  L+ L+ L L  N      P+
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISPL 281

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 6/87 (6%)

Query: 57  NLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR 116
            L   +   +     +  +  +      +  L         SI   +  L ++T+++ S 
Sbjct: 20  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSN 75

Query: 117 NNLSGHIPQYLENLSFLSFLNLSYNHF 143
           N L+   P  L+NL+ L  + ++ N  
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQI 100

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 88  LSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKV 147
             +   + T ++  + + L  +T L   R  +       +E L+ L+ +N S N      
Sbjct: 27  TVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDIT 82

Query: 148 PIE 150
           P++
Sbjct: 83  PLK 85

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.0 bits (154), Expect = 7e-13
 Identities = 41/168 (24%), Positives = 65/168 (38%), Gaps = 2/168 (1%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           PPS+ +  NL+ +T   N++SG +P            + +  N L+G  P    NL    
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF 201

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
                S        + L G            +        +   K++  LDL  N + G 
Sbjct: 202 VDL--SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259

Query: 123 IPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG 170
           +PQ L  L FL  LN+S+N+  G++P           +   N+ LCG 
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.5 bits (145), Expect = 1e-11
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 82  CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 141
             +L  L +++N   G++P  L+ LK +  L++S NNL G IPQ   NL        + N
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301

Query: 142 HFEGKVPIEA 151
                 P+ A
Sbjct: 302 KCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.5 bits (137), Expect = 2e-10
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 65  DISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP 124
           D+ +N   G +P  L     L  L++  N+  G IP    +L+       + N      P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 4e-04
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 20  NKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTL 79
           N++ GT+P+ L ++      L++  N L G  P + GNL+       ++N      P  L
Sbjct: 254 NRIYGTLPQGLTQL-KFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP--L 309

Query: 80  GGCT 83
             CT
Sbjct: 310 PACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 92  DNSFTGSIPSTLSSLKSITELDLSRNNLSG--HIPQYLENLSFLSFLNLSYNHF 143
           + ++ G +  T +    +  LDLS  NL     IP  L NL +L+FL +   + 
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 3/96 (3%)

Query: 56  GNLKHLVSLDISSNMFSG--EIPTTLGGCTSLEHLSMQDN-SFTGSIPSTLSSLKSITEL 112
                + +LD+S         IP++L     L  L +    +  G IP  ++ L  +  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 113 DLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP 148
            ++  N+SG IP +L  +  L  L+ SYN   G +P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 8e-09
 Identities = 18/93 (19%), Positives = 28/93 (30%), Gaps = 10/93 (10%)

Query: 61  LVSLDISSNMFSGE-IPTTLGGCTSLEHLSMQDNSFTG----SIPSTLSSLKSITELDLS 115
           + SLDI     S       L      + + + D   T      I S L    ++ EL+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 116 RNNLSGHIPQYL-----ENLSFLSFLNLSYNHF 143
            N L       +          +  L+L     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 7e-08
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 81  GCTSLEHLSMQDNSFTG----SIPSTLSSLKSITELDLSRNNLSGHIPQYL-----ENLS 131
             + L  L + D   +     S+ +TL +  S+ ELDLS N L       L     +   
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 132 FLSFLNLSYNHFEGKVP 148
            L  L L   ++  ++ 
Sbjct: 427 LLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 2e-07
 Identities = 15/90 (16%), Positives = 25/90 (27%), Gaps = 9/90 (10%)

Query: 50  HFPAEVGNLKHLVSLDISSNMFSGE----IPTTLGGCTSLEHLSMQDNSFTGSIPSTLSS 105
                      L  L ++    S      +  TL    SL  L + +N    +    L  
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 106 -----LKSITELDLSRNNLSGHIPQYLENL 130
                   + +L L     S  +   L+ L
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 2e-07
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 84  SLEHLSMQDNSFTGS-IPSTLSSLKSITELDLSRNNLSG----HIPQYLENLSFLSFLNL 138
            ++ L +Q    + +     L  L+    + L    L+      I   L     L+ LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 139 SYNHFEGK 146
             N     
Sbjct: 63  RSNELGDV 70

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 3e-06
 Identities = 11/92 (11%), Positives = 27/92 (29%), Gaps = 5/92 (5%)

Query: 40  LDLFDNLLS-GHFPAEVGNLKHLVSLDISSNMFSGE----IPTTLGGCTSLEHLSMQDNS 94
           LD+    LS   +   +  L+    + +     +      I + L    +L  L+++ N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 95  FTGSIPSTLSSLKSITELDLSRNNLSGHIPQY 126
                   +          + + +L       
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 4e-05
 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 9/77 (11%)

Query: 40  LDLFDNLLSG----HFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG-----CTSLEHLSM 90
           L L D  +S        A +     L  LD+S+N         L          LE L +
Sbjct: 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 433

Query: 91  QDNSFTGSIPSTLSSLK 107
            D  ++  +   L +L+
Sbjct: 434 YDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.001
 Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 9/92 (9%)

Query: 11 NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSG----HFPAEVGNLKHLVSLDI 66
          ++  L     +LS     +LL ++ +  ++ L D  L+        + +     L  L++
Sbjct: 3  DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 67 SSNMFSGEIPTTLG-----GCTSLEHLSMQDN 93
           SN         +          ++ LS+Q+ 
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.003
 Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 4/64 (6%)

Query: 87  HLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG----HIPQYLENLSFLSFLNLSYNH 142
           +  ++D                +  L L+  ++S      +   L     L  L+LS N 
Sbjct: 349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408

Query: 143 FEGK 146
               
Sbjct: 409 LGDA 412

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.5 bits (124), Expect = 8e-09
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 9/96 (9%)

Query: 42  LFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPS 101
            + N  S    +       L  L++S+N    E+P        LE L    N     +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPE 321

Query: 102 TLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLN 137
              +LK   +L +  N L    P   E++  L   +
Sbjct: 322 LPQNLK---QLHVEYNPLRE-FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 7e-07
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 8/77 (10%)

Query: 69  NMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLE 128
           N  S EI +      SLE L++ +N     +P+    L+    L  S N+L+  +P+  +
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPELPQ 324

Query: 129 NLSFLSFLNLSYNHFEG 145
           NL  L   ++ YN    
Sbjct: 325 NLKQL---HVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 82  CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 141
                 L + +   + S+P     L     L  S N+L+  +P+  ++L  L   N +  
Sbjct: 37  DRQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 142 HF 143
             
Sbjct: 92  AL 93

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.2 bits (121), Expect = 2e-08
 Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 9/168 (5%)

Query: 3   PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
           P +      L  L   KN+L     +    +      L + +N ++    +    L  ++
Sbjct: 72  PGAFAPLVKLERLYLSKNQLKELPEK----MPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 63  SLDISS--NMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
            +++ +     SG       G   L ++ + D + T        SL   TEL L  N ++
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL---TELHLDGNKIT 184

Query: 121 GHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLC 168
                 L+ L+ L+ L LS+N                    + N  L 
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 232

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.7 bits (112), Expect = 3e-07
 Identities = 32/154 (20%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 4   PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVS 63
           P    C   ++   C +     VP+ L         LDL +N ++     +  NLK+L +
Sbjct: 5   PFRCQCHLRVV--QCSDLGLEKVPKDLPPDTAL---LDLQNNKITEIKDGDFKNLKNLHT 59

Query: 64  LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 123
           L + +N  S   P        LE L +  N     +P  +   K++ EL +  N ++   
Sbjct: 60  LILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVR 116

Query: 124 PQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTK 157
                 L+ +  + L  N  +        F   K
Sbjct: 117 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.4 bits (93), Expect = 9e-05
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 5/138 (3%)

Query: 8   NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDIS 67
           N   ++ L T   K SG        +  +   + + D  ++       G    L  L + 
Sbjct: 124 NQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRIADTNITTIPQ---GLPPSLTELHLD 179

Query: 68  SNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYL 127
            N  +     +L G  +L  L +  NS +     +L++   + EL L+ N L   +P  L
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 238

Query: 128 ENLSFLSFLNLSYNHFEG 145
            +  ++  + L  N+   
Sbjct: 239 ADHKYIQVVYLHNNNISA 256

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 2e-07
 Identities = 30/127 (23%), Positives = 44/127 (34%)

Query: 42  LFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPS 101
           L DN L         +L +L  L +  N  S        G  SL+ L +  N      P 
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 102 TLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISL 161
               L  +  L L  NNLS    + L  L  L +L L+ N +        ++   +    
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRG 255

Query: 162 VGNENLC 168
             +E  C
Sbjct: 256 SSSEVPC 262

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 2/141 (1%)

Query: 8   NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDIS 67
               L  L    N L   +P    R +     L L  N +S         L  L  L + 
Sbjct: 127 GLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185

Query: 68  SNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYL 127
            N  +   P        L  L +  N+ +      L+ L+++  L L+ N          
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-R 244

Query: 128 ENLSFLSFLNLSYNHFEGKVP 148
              ++L     S +     +P
Sbjct: 245 PLWAWLQKFRGSSSEVPCSLP 265

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.6 bits (109), Expect = 6e-07
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 67  SSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQY 126
           S         T L   + L  L   DN  +   P  L+SL ++ E+ L  N +S   P  
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-- 212

Query: 127 LENLSFLSFLNLS 139
           L N S L  + L+
Sbjct: 213 LANTSNLFIVTLT 225

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 4e-06
 Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 6/108 (5%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           L L    L+      +  L  +  LD+S N      P  L     LE L   DN+     
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALE--N 57

Query: 100 PSTLSSLKSITELDLSRNNL-SGHIPQYLENLSFLSFLNLSYNHFEGK 146
              +++L  + EL L  N L      Q L +   L  LNL  N    +
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 5e-06
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 3/62 (4%)

Query: 82  CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 141
             S   ++    + T ++P  L   K  T L LS N L       L   + L+ LNL   
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 142 HF 143
             
Sbjct: 66  EL 67

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 0.004
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 45  NLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSF 95
           N L+      +  L++L +L +  N     IP    G   L    +  N +
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 6e-06
 Identities = 16/88 (18%), Positives = 40/88 (45%), Gaps = 1/88 (1%)

Query: 27  PRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGE-IPTTLGGCTSL 85
           P    R++++ V+             AE  +   +  +D+S+++     +   L  C+ L
Sbjct: 14  PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 73

Query: 86  EHLSMQDNSFTGSIPSTLSSLKSITELD 113
           ++LS++    +  I +TL+   ++  L+
Sbjct: 74  QNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 3/87 (3%)

Query: 63  SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG- 121
           +LD++      ++   L     +       +     +    S  + +  +DLS + +   
Sbjct: 4   TLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 122 HIPQYLENLSFLSFLNLSYNHFEGKVP 148
            +   L   S L  L+L        + 
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIV 88

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 1e-04
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 8/93 (8%)

Query: 84  SLEHLSMQDNSFTG----SIPSTLSSLKSITELDLSRNNLSG----HIPQYLENLSFLSF 135
           S+E  S++ ++ T     S+ + L    S+ E+ LS N +       + + + +   L  
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 136 LNLSYNHFEGKVPIEAIFNSTKGISLVGNENLC 168
              S                    +L+    L 
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 96

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 8/92 (8%)

Query: 59  KHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTG----SIPSTLSSLKSITELDL 114
           K L    I++      +   L    S++ + +  N+        +   ++S K +   + 
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 115 SRN---NLSGHIPQYLENLSFLSFLNLSYNHF 143
           S      +   IP+ L  L          +  
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 98

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 11/69 (15%)

Query: 87  HLSMQDNSFTGSIPSTLS------SLKSITELDLSRNNLSGHIPQYL-----ENLSFLSF 135
            L + D   +    + +           +  L L  N +     + L     E +  L F
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 136 LNLSYNHFE 144
           L L+ N F 
Sbjct: 307 LELNGNRFS 315

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 11/81 (13%), Positives = 18/81 (22%), Gaps = 2/81 (2%)

Query: 40  LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
           L L  N +           +        +N           G +    L +         
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 100 PSTLSSLKSITELDLSRNNLS 120
              L +LK +        NL 
Sbjct: 218 SYGLENLKKLRARST--YNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 14/76 (18%), Positives = 21/76 (27%)

Query: 64  LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 123
           L ++ N           G    E     +N+                 LD+SR  +    
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 124 PQYLENLSFLSFLNLS 139
              LENL  L   +  
Sbjct: 218 SYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 4/63 (6%)

Query: 82  CT-SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSY 140
           C  S      Q++  T  IPS L   ++  EL      L             L  + +S 
Sbjct: 6   CHCSNRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQ 62

Query: 141 NHF 143
           N  
Sbjct: 63  NDV 65

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 88  LSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKV 147
            +++  S T ++  T + L SI ++  + +++     Q ++ L  ++ L L+ N      
Sbjct: 29  DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLTDIK 84

Query: 148 PIE 150
           P+ 
Sbjct: 85  PLA 87

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 3/114 (2%)

Query: 45  NLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLE--HLSMQDNSFTGSIPST 102
           +L       ++      V L+  S+M +  +         L   +LS         + S 
Sbjct: 28  DLKGLRSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSI 86

Query: 103 LSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNST 156
           +    ++  L+LS N L             L  L L  N        ++ + S 
Sbjct: 87  VQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA 140

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (78), Expect = 0.003
 Identities = 9/65 (13%), Positives = 17/65 (26%), Gaps = 2/65 (3%)

Query: 82  CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYL-ENLSFLSFLNLSY 140
                 L    +         L   +++TEL +       H+       L  L  L +  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 141 NHFEG 145
           +    
Sbjct: 66  SGLRF 70

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.004
 Identities = 13/98 (13%), Positives = 26/98 (26%), Gaps = 3/98 (3%)

Query: 82  CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 141
                 L ++       I +  ++L     +D S N +          L  L  L ++ N
Sbjct: 17  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNN 73

Query: 142 HFEGKVPIEAIFNSTKGISLVGNENLCGGSRKSKFSIL 179
                              ++ N +L         + L
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASL 111

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	223
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.83
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.82
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.79
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.76
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.69
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.69
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.63
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.62
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.62
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.59
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.57
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.55
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.55
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.49
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.46
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.19
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.1
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.93
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.92
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.89
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.69
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.68
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.66
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.16
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.89
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.56
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.25

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.1e-24  Score=168.96  Aligned_cols=164  Identities=27%  Similarity=0.247  Sum_probs=115.1

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcccc---------
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFS---------   72 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------   72 (223)
                      ||+.+.  +++++|+|++|+|+ .+|...|..++.|++|+|++|.++...  .+..+++|++|++++|.++         
T Consensus        25 iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~l   99 (266)
T d1p9ag_          25 LPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSLPLLGQTL   99 (266)
T ss_dssp             CCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEECCSSCCSSCCCCTTTC
T ss_pred             eCcCcC--cCCCEEECcCCcCC-CcCHHHhhccccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence            455443  45666666666666 566555555666666666666665332  2344555555555555554         


Q ss_pred             --------------ccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEec
Q 048080           73 --------------GEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNL  138 (223)
Q Consensus        73 --------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l  138 (223)
                                    +..+..+..+.+++.|++++|.++...+..+..++.++.+++++|++++..+..|..+++|+.|++
T Consensus       100 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~L  179 (266)
T d1p9ag_         100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL  179 (266)
T ss_dssp             TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             cccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeec
Confidence                          344444455555666666666666566667778899999999999999888888999999999999


Q ss_pred             cCCcCcccCCc-hhhhcCCcceeecCCCCCCCCC
Q 048080          139 SYNHFEGKVPI-EAIFNSTKGISLVGNENLCGGS  171 (223)
Q Consensus       139 ~~N~l~~~~~~-~~~~~~l~~l~~~~n~~~C~~~  171 (223)
                      ++|+++ .+|. ......++.+++.+|||.|+|.
T Consensus       180 s~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         180 QENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             CSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             ccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            999999 5553 3456778999999999999984

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=1.3e-24  Score=173.81  Aligned_cols=169  Identities=31%  Similarity=0.517  Sum_probs=118.8

Q ss_pred             CCCCCCCCCCCCeeeccc-CccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080            2 RPPSLGNCQNLILLTTCK-NKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG   80 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~-n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   80 (223)
                      ||++++++++|++|++++ |.+.|.+|+.+.. ++.|++|++++|.+.+..+..+..+.+|+.+++++|.+.+..|..+.
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~-L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~  146 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             CChHHhcCcccccccccccccccccccccccc-ccccchhhhccccccccccccccchhhhcccccccccccccCchhhc
Confidence            677777777777777765 6777677766544 45557777777777666555555555555555555555544444444


Q ss_pred             CCCCCcEEEcccCcccccCC------------------------------------------------------------
Q 048080           81 GCTSLEHLSMQDNSFTGSIP------------------------------------------------------------  100 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~~~~~------------------------------------------------------------  100 (223)
                      .++.++.+++++|.+++.+|                                                            
T Consensus       147 ~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l  226 (313)
T d1ogqa_         147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI  226 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred             cCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            44444444444444332221                                                            


Q ss_pred             -----------ccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCCCCCC
Q 048080          101 -----------STLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCG  169 (223)
Q Consensus       101 -----------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~~~C~  169 (223)
                                 ..+..+++|+.|+|++|+++|.+|..+..+++|+.|++++|+++|.+|....+..++.+++.+|+..|+
T Consensus       227 ~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             ECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred             ccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccC
Confidence                       123445688999999999999999999999999999999999999999776778888899999998888


Q ss_pred             CC
Q 048080          170 GS  171 (223)
Q Consensus       170 ~~  171 (223)
                      .+
T Consensus       307 ~p  308 (313)
T d1ogqa_         307 SP  308 (313)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=7e-24  Score=158.22  Aligned_cols=156  Identities=25%  Similarity=0.361  Sum_probs=132.9

Q ss_pred             CCCeeecccCccccCCChhhhhccCCceEEEccCCcccc-cCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEE
Q 048080           11 NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSG-HFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLS   89 (223)
Q Consensus        11 ~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   89 (223)
                      +.+.++.++++++ ++|.+++   +.+++|+|++|.|++ ..+..|.++++|++|++++|.+....++.|..+++|++|+
T Consensus         9 ~~~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_           9 EGTTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceee
Confidence            3567899999998 9998763   567999999999975 4467789999999999999999999999999999999999


Q ss_pred             cccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCCCCCC
Q 048080           90 MQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCG  169 (223)
Q Consensus        90 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~~~C~  169 (223)
                      |++|++++..+++|.++++|++|+|++|+++++.+++|..+++|+++++++|++.+.++..+....+....+..+...|.
T Consensus        85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~  164 (192)
T d1w8aa_          85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCG  164 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBC
T ss_pred             eccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeC
Confidence            99999998889999999999999999999999889999999999999999999998877655444444444555555554


Q ss_pred             C
Q 048080          170 G  170 (223)
Q Consensus       170 ~  170 (223)
                      .
T Consensus       165 ~  165 (192)
T d1w8aa_         165 A  165 (192)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.6e-23  Score=165.34  Aligned_cols=167  Identities=22%  Similarity=0.224  Sum_probs=135.3

Q ss_pred             CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCC
Q 048080            3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC   82 (223)
Q Consensus         3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l   82 (223)
                      |.+|+++++|++|++++|.+. .++...+.....|+.+++++|.++++.+..|..+++|++|++++|.++++.+..|.++
T Consensus        98 ~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l  176 (284)
T d1ozna_          98 PATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL  176 (284)
T ss_dssp             TTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             chhhcccccCCEEecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccc
Confidence            567888888888888888887 6777777777778888888888887777788888888888888888888778888888


Q ss_pred             CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeec
Q 048080           83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLV  162 (223)
Q Consensus        83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~  162 (223)
                      ++|+.+++++|++++..|..|..+++|++|++++|.+++..+..|..+++|+.+++++|++.|.|+..+....++.....
T Consensus       177 ~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~  256 (284)
T d1ozna_         177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGS  256 (284)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSE
T ss_pred             cccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHHHHhCcCC
Confidence            88888888888888888888888888888888888888888888888888888888888888888766655556665555


Q ss_pred             CCCCCCCC
Q 048080          163 GNENLCGG  170 (223)
Q Consensus       163 ~n~~~C~~  170 (223)
                      .+...|..
T Consensus       257 ~~~~~C~~  264 (284)
T d1ozna_         257 SSEVPCSL  264 (284)
T ss_dssp             ECCCBEEE
T ss_pred             CCceEeCC
Confidence            56666653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.3e-22  Score=160.01  Aligned_cols=169  Identities=22%  Similarity=0.211  Sum_probs=145.1

Q ss_pred             CCCCCCCCCCeeecccCcccc------------------------CCChhhhhccCCceEEEccCCcccccCCcCCCCCC
Q 048080            4 PSLGNCQNLILLTTCKNKLSG------------------------TVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLK   59 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~------------------------~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~   59 (223)
                      .+|.++++|++|++++|.+..                        .++...+...+.|++|++++|.+....+..+..+.
T Consensus        50 ~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  129 (284)
T d1ozna_          50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA  129 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             HHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhc
Confidence            468899999999999988652                        23344556667789999999998877778888889


Q ss_pred             CCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEecc
Q 048080           60 HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLS  139 (223)
Q Consensus        60 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~  139 (223)
                      +|+.+++++|.++++.+..|..+++|+.|++++|++++..+.+|.++++|+.+++++|++++..|..|..+++|+.|+++
T Consensus       130 ~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~  209 (284)
T d1ozna_         130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF  209 (284)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             ccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccc
Confidence            99999999999998888889999999999999999998888999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCch-hhhcCCcceeecCCCCCCCCCC
Q 048080          140 YNHFEGKVPIE-AIFNSTKGISLVGNENLCGGSR  172 (223)
Q Consensus       140 ~N~l~~~~~~~-~~~~~l~~l~~~~n~~~C~~~~  172 (223)
                      +|.+.+..+.. .....++.+++++|++.|+|..
T Consensus       210 ~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             SSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             ccccccccccccccccccCEEEecCCCCCCCccc
Confidence            99998755433 3466788999999999999853

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=4.3e-23  Score=153.91  Aligned_cols=167  Identities=20%  Similarity=0.225  Sum_probs=140.2

Q ss_pred             CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080            1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG   80 (223)
Q Consensus         1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   80 (223)
                      +||+.+.  +++++|++++|+|++.++...|...+.|++|++++|.+....+..|..+++|++|++++|.++++.++.|.
T Consensus        22 ~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~   99 (192)
T d1w8aa_          22 EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL   99 (192)
T ss_dssp             SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST
T ss_pred             ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHh
Confidence            4787765  68999999999998568888888899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCccee
Q 048080           81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGIS  160 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~  160 (223)
                      ++++|++|+|++|+|++..+++|..+++|++++|++|.+.......+ -...++...+..|.+.|..|.  .+..+...+
T Consensus       100 ~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~--~l~~~~l~~  176 (192)
T d1w8aa_         100 GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPS--KVRDVQIKD  176 (192)
T ss_dssp             TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSST--TTTTSBGGG
T ss_pred             CCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCCh--hhcCCEeee
Confidence            99999999999999999999999999999999999999985433221 112345666778888887763  345566678


Q ss_pred             ecCCCCCCCCCC
Q 048080          161 LVGNENLCGGSR  172 (223)
Q Consensus       161 ~~~n~~~C~~~~  172 (223)
                      +..|...|.++.
T Consensus       177 L~~n~l~C~~~~  188 (192)
T d1w8aa_         177 LPHSEFKCSSEN  188 (192)
T ss_dssp             SCTTTCCCCCC-
T ss_pred             cCHhhCcCCCCC
Confidence            888988897654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.2e-20  Score=145.85  Aligned_cols=142  Identities=25%  Similarity=0.252  Sum_probs=109.4

Q ss_pred             CCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCc
Q 048080            7 GNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLE   86 (223)
Q Consensus         7 ~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~   86 (223)
                      +.+++|++|++++|++. ..+. .+...+.|++|++++|.+....+..+..+.++++|++++|.++...+..+..+++++
T Consensus        74 ~~l~~L~~L~Ls~N~l~-~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~  151 (266)
T d1p9ag_          74 GTLPVLGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE  151 (266)
T ss_dssp             SCCTTCCEEECCSSCCS-SCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccccccccccccccccc-cccc-ccccccccccccccccccceeeccccccccccccccccccccceeccccccccccch
Confidence            34444444444444443 2332 223344445555555555555556667778888899999999988888899999999


Q ss_pred             EEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchh
Q 048080           87 HLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEA  151 (223)
Q Consensus        87 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~  151 (223)
                      .+++++|++++..++.|..+++|++|+|++|+++ .+|..+..+++|+.|++++|++.|.|...+
T Consensus       152 ~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~~~  215 (266)
T d1p9ag_         152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILY  215 (266)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGGHH
T ss_pred             hcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcchHH
Confidence            9999999999888889999999999999999999 778888899999999999999999887543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.82  E-value=1e-20  Score=150.89  Aligned_cols=146  Identities=32%  Similarity=0.478  Sum_probs=111.5

Q ss_pred             CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCc---
Q 048080            1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT---   77 (223)
Q Consensus         1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---   77 (223)
                      +||++|+++++|++|++++|++.+ ++...+.....|+.+++++|.+.+..|..+..++.++++++++|.+.+..|.   
T Consensus        92 ~iP~~i~~L~~L~~L~Ls~N~l~~-~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~  170 (313)
T d1ogqa_          92 PIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG  170 (313)
T ss_dssp             CCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred             ccccccccccccchhhhccccccc-cccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccc
Confidence            489999999999999999999884 4434445555566677776666666666666666666666665555432221   


Q ss_pred             --------------------------------------------------------------------cccCCCCCcEEE
Q 048080           78 --------------------------------------------------------------------TLGGCTSLEHLS   89 (223)
Q Consensus        78 --------------------------------------------------------------------~~~~l~~L~~L~   89 (223)
                                                                                          .+..+++|+.|+
T Consensus       171 ~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~  250 (313)
T d1ogqa_         171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD  250 (313)
T ss_dssp             CCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                                                                233367899999


Q ss_pred             cccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCC
Q 048080           90 MQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP  148 (223)
Q Consensus        90 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~  148 (223)
                      +++|+++|.+|..|+++++|++|+|++|+++|.+|. +..+++|+.+++++|+..|..|
T Consensus       251 Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTT
T ss_pred             CccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCC
Confidence            999999999999999999999999999999999885 6788999999999998655433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=2.5e-18  Score=136.23  Aligned_cols=68  Identities=24%  Similarity=0.260  Sum_probs=48.8

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcccc
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFS   72 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~   72 (223)
                      ||+.+.  +++++|++++|+|+ .+|+..|...+.|++|++++|.+....|..|..+++|++|++++|.++
T Consensus        25 lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~   92 (305)
T d1xkua_          25 VPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK   92 (305)
T ss_dssp             CCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS
T ss_pred             cCCCCC--CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC
Confidence            566554  56777777777777 777666666667777777777777666777777777777777777654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=2.2e-18  Score=136.57  Aligned_cols=166  Identities=22%  Similarity=0.235  Sum_probs=116.9

Q ss_pred             CCC-CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccC-----------------------------
Q 048080            2 RPP-SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHF-----------------------------   51 (223)
Q Consensus         2 ip~-~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~-----------------------------   51 (223)
                      ||+ +|.++++|++|++++|.+. .++...|..++.|++|++++|.++...                             
T Consensus        46 l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~  124 (305)
T d1xkua_          46 IKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN  124 (305)
T ss_dssp             BCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCT
T ss_pred             cChhHhhcccccccccccccccc-ccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccc
Confidence            453 5777777777777777777 666556666666677777776654221                             


Q ss_pred             ------------------CcCCCCCC---------------------CCCeEeccCccccccCCccccCCCCCcEEEccc
Q 048080           52 ------------------PAEVGNLK---------------------HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQD   92 (223)
Q Consensus        52 ------------------~~~~~~l~---------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (223)
                                        +..|..++                     +|++|++++|...+..+..|..++.++.|++++
T Consensus       125 ~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~  204 (305)
T d1xkua_         125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF  204 (305)
T ss_dssp             TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred             cccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhHhhcccccccccccc
Confidence                              11122222                     445555555555556666777888888999999


Q ss_pred             CcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc-------hhhhcCCcceeecCCC
Q 048080           93 NSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI-------EAIFNSTKGISLVGNE  165 (223)
Q Consensus        93 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-------~~~~~~l~~l~~~~n~  165 (223)
                      |.+++..+..+.++++|++|+|++|+++ .+|..+..+++|+.|++++|+++..-..       ......+..+++.+|+
T Consensus       205 n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         205 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             SCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            9888888888888999999999999998 5577888899999999999998843211       1234567788899998


Q ss_pred             CCCC
Q 048080          166 NLCG  169 (223)
Q Consensus       166 ~~C~  169 (223)
                      +.+.
T Consensus       284 ~~~~  287 (305)
T d1xkua_         284 VQYW  287 (305)
T ss_dssp             SCGG
T ss_pred             CccC
Confidence            8654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=9.6e-19  Score=126.50  Aligned_cols=129  Identities=19%  Similarity=0.135  Sum_probs=99.6

Q ss_pred             CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCC
Q 048080            5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTS   84 (223)
Q Consensus         5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   84 (223)
                      .|.++.++++|++++|+|+ .++ .++...+.|+.|++++|.++..  +.|..+++|++|++++|.++.+.+..+..+++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~-~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCCCCC-ccC-ccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccc
Confidence            4667778888999999988 776 4556677788899999988854  34788888999999999888766666778888


Q ss_pred             CcEEEcccCcccccCC-ccccCCCCCCEEECCCCcccccc---chhhhCCCCCCEEe
Q 048080           85 LEHLSMQDNSFTGSIP-STLSSLKSITELDLSRNNLSGHI---PQYLENLSFLSFLN  137 (223)
Q Consensus        85 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~l~  137 (223)
                      |+.|++++|+++.... ..+..+++|+++++++|.++...   +..+..+|+|+.||
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            9999999988874322 45778888889999988887432   23577788888876

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=4.9e-17  Score=112.18  Aligned_cols=101  Identities=24%  Similarity=0.304  Sum_probs=46.8

Q ss_pred             eeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccC
Q 048080           14 LLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDN   93 (223)
Q Consensus        14 ~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N   93 (223)
                      +|++++|+++ .++.  +.....|++|++++|.++ .+|..|..+++|++|++++|.+++. | .+..+++|+.|++++|
T Consensus         2 ~L~Ls~n~l~-~l~~--l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           2 VLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             EEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             EEEcCCCCCC-CCcc--cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            4555555554 4442  233334455555555554 2333444555555555555555432 1 2444555555555555


Q ss_pred             cccccCC-ccccCCCCCCEEECCCCccc
Q 048080           94 SFTGSIP-STLSSLKSITELDLSRNNLS  120 (223)
Q Consensus        94 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~  120 (223)
                      +++.... ..+..+++|+.+++++|.++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            5542221 23444445555555555444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.1e-16  Score=119.24  Aligned_cols=146  Identities=22%  Similarity=0.320  Sum_probs=99.3

Q ss_pred             CCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcE
Q 048080            8 NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEH   87 (223)
Q Consensus         8 ~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   87 (223)
                      .+.++++|++++|.+. +++.  ...++.|++|++++|.+++..+  +.++++|++|++++|.+....  .+.+++.|+.
T Consensus        38 ~l~~l~~L~l~~~~i~-~l~~--l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~  110 (199)
T d2omxa2          38 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTG  110 (199)
T ss_dssp             HHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred             HhcCCCEEECCCCCCC-Cccc--cccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--cccccccccc
Confidence            4567778888888777 5542  3445667888888887775433  677778888888887776432  3677777888


Q ss_pred             EEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCC
Q 048080           88 LSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNE  165 (223)
Q Consensus        88 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~  165 (223)
                      |++++|.....  ..+..+++|+.|++++|++.. ++ .+..+++++.+++.+|.+++. +.......++.+++++|+
T Consensus       111 L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l-~~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         111 LTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDL-KPLANLTTLERLDISSNK  183 (199)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSC
T ss_pred             ccccccccccc--cccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccCC-ccccCCCCCCEEECCCCC
Confidence            88877777643  236677777788887777763 33 467777777777777777653 223445667777777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2e-16  Score=118.83  Aligned_cols=144  Identities=27%  Similarity=0.263  Sum_probs=69.5

Q ss_pred             CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCC
Q 048080            6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSL   85 (223)
Q Consensus         6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   85 (223)
                      +..+++|++|++++|+++ .++.  +..++.|++|++++|.++.. + .+.++++|+.|++++|.+...  ..+..++.+
T Consensus        64 l~~l~~L~~L~L~~n~i~-~l~~--~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~~~~~~~--~~l~~l~~l  136 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQL  136 (210)
T ss_dssp             GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTC
T ss_pred             HhhCCCCCEEeCCCcccc-Cccc--cccCcccccccccccccccc-c-ccccccccccccccccccccc--ccccccccc
Confidence            344555555555555554 3332  22344445555555555432 2 244455555555555544321  234455555


Q ss_pred             cEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceee
Q 048080           86 EHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISL  161 (223)
Q Consensus        86 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~  161 (223)
                      +.+++++|.+++.  ..+..+++|+++++++|++++..  .+..+++|+.|++++|+++. ++....+.+++.+++
T Consensus       137 ~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L  207 (210)
T d1h6ta2         137 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLEL  207 (210)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEE
T ss_pred             ccccccccccccc--ccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCC-ChhhcCCCCCCEEEc
Confidence            5555555555421  22445555666666666665332  25555666666666665553 232233344444444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.3e-17  Score=117.69  Aligned_cols=112  Identities=21%  Similarity=0.154  Sum_probs=95.8

Q ss_pred             hccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCE
Q 048080           32 RIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITE  111 (223)
Q Consensus        32 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  111 (223)
                      .....+++|+|++|.|+. +++.+..+++|+.|++++|.++.+  +.|..+++|++|++++|+++...+..+..+++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            345567999999999995 466678899999999999999965  35899999999999999999777777788999999


Q ss_pred             EECCCCccccccc-hhhhCCCCCCEEeccCCcCccc
Q 048080          112 LDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFEGK  146 (223)
Q Consensus       112 L~L~~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~  146 (223)
                      |++++|+++.... ..+..+++|+.+++++|+++..
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~  127 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK  127 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccc
Confidence            9999999985422 4688999999999999999754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=1.2e-16  Score=110.22  Aligned_cols=104  Identities=27%  Similarity=0.319  Sum_probs=90.6

Q ss_pred             eEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCC
Q 048080           38 VLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRN  117 (223)
Q Consensus        38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  117 (223)
                      +.|++++|.++ .++ .+..+++|++|++++|.++ ..|+.|..+++|+.|++++|.+++ +| .+..+++|+++++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            47999999999 444 4889999999999999998 457789999999999999999995 44 4899999999999999


Q ss_pred             cccccc-chhhhCCCCCCEEeccCCcCccc
Q 048080          118 NLSGHI-PQYLENLSFLSFLNLSYNHFEGK  146 (223)
Q Consensus       118 ~l~~~~-p~~~~~l~~L~~l~l~~N~l~~~  146 (223)
                      +++... ...+..+++|+.+++++|++++.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            999653 25688999999999999999854

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.2e-16  Score=113.19  Aligned_cols=133  Identities=17%  Similarity=0.090  Sum_probs=98.6

Q ss_pred             eEEEccCCcccccCCcCCCCCCCCCeEeccCc-cccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCC
Q 048080           38 VLLDLFDNLLSGHFPAEVGNLKHLVSLDISSN-MFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR  116 (223)
Q Consensus        38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  116 (223)
                      +.++.+++.+. ..|..+..+++|++|++++| .++.+.++.|.++++|+.|++++|+++.+.+++|..+++|++|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            44666777666 45566778888999999766 48877778899999999999999999988888899999999999999


Q ss_pred             CccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCC--cceeecCCCCCCCCCC
Q 048080          117 NNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNST--KGISLVGNENLCGGSR  172 (223)
Q Consensus       117 N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l--~~l~~~~n~~~C~~~~  172 (223)
                      |+++...+..|..+ +|+.|++++|++.|.+...+....+  ....+..+...|..+.
T Consensus        90 N~l~~l~~~~~~~~-~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~  146 (156)
T d2ifga3          90 NALESLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG  146 (156)
T ss_dssp             SCCSCCCSTTTCSC-CCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred             CCCcccChhhhccc-cccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcCh
Confidence            99996655555544 6999999999999888654332221  2223334555666543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=9.3e-16  Score=114.16  Aligned_cols=130  Identities=25%  Similarity=0.362  Sum_probs=111.0

Q ss_pred             CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCC
Q 048080            5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTS   84 (223)
Q Consensus         5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   84 (223)
                      .++.+++|++|++++|+++ .++.  +..++.|++|++++|.+....  .+.++++|+.|++++|.+...  ..+..+++
T Consensus        57 ~l~~l~nL~~L~Ls~N~l~-~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~  129 (199)
T d2omxa2          57 GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDI--DPLKNLTN  129 (199)
T ss_dssp             TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTT
T ss_pred             ccccCCCcCcCcccccccc-Cccc--ccCCccccccccccccccccc--ccccccccccccccccccccc--cccchhhh
Confidence            5778999999999999998 6664  566778899999999987433  478999999999999988754  45788999


Q ss_pred             CcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcc
Q 048080           85 LEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG  145 (223)
Q Consensus        85 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~  145 (223)
                      |+.|++++|++.. ++ .+..+++|+.|++.+|++++..  .+..+++|+.|++++|+++.
T Consensus       130 L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         130 LNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             hHHhhhhhhhhcc-cc-cccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC
Confidence            9999999999984 33 5888999999999999999653  48899999999999999985

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=2.2e-15  Score=122.07  Aligned_cols=149  Identities=26%  Similarity=0.332  Sum_probs=97.6

Q ss_pred             CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCC---------
Q 048080            6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIP---------   76 (223)
Q Consensus         6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------   76 (223)
                      +..+++|+.|++++|.++ .++.  +...+.++.+++++|.+++..+  +..+++|++|++++|.+++..+         
T Consensus       215 ~~~~~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~  289 (384)
T d2omza2         215 LGILTNLDELSLNGNQLK-DIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTN  289 (384)
T ss_dssp             GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSE
T ss_pred             ccccCCCCEEECCCCCCC-Ccch--hhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCcccccccccc
Confidence            345567777777777776 5542  3445666777777777765432  5666777777777776654321         


Q ss_pred             -----------ccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcc
Q 048080           77 -----------TTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG  145 (223)
Q Consensus        77 -----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~  145 (223)
                                 ..+..+++++.|++++|++++..  .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++++
T Consensus       290 l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         290 LELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             EECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCB
T ss_pred             ccccccccccccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCC
Confidence                       23455667777777777777543  26777778888888887774 33 47777888888888888776


Q ss_pred             cCCchhhhcCCcceeecCC
Q 048080          146 KVPIEAIFNSTKGISLVGN  164 (223)
Q Consensus       146 ~~~~~~~~~~l~~l~~~~n  164 (223)
                      ..| ...+..++.+++++|
T Consensus       366 l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         366 LTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CGG-GTTCTTCSEEECCCE
T ss_pred             Chh-hccCCCCCEeeCCCC
Confidence            544 334556667776665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.3e-15  Score=107.74  Aligned_cols=115  Identities=20%  Similarity=0.160  Sum_probs=96.9

Q ss_pred             CCCCCCeEeccCccccccCCccccCCCCCcEEEcccC-cccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCE
Q 048080           57 NLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDN-SFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSF  135 (223)
Q Consensus        57 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  135 (223)
                      .....+.++.+++.+. ..|..+..+++|+.|++++| .++...+++|.++++|+.|++++|+++.+.+.+|..+++|+.
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            3345667889988887 56778899999999999876 598777888999999999999999999888999999999999


Q ss_pred             EeccCCcCcccCCchhhhcCCcceeecCCCCCCCCCC
Q 048080          136 LNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGGSR  172 (223)
Q Consensus       136 l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~~~C~~~~  172 (223)
                      |++++|++....+.......+..+++++||+.|+|..
T Consensus        85 L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             EECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGG
T ss_pred             eeccCCCCcccChhhhccccccccccCCCcccCCchH
Confidence            9999999995444333334688999999999999843

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=5e-15  Score=112.26  Aligned_cols=63  Identities=24%  Similarity=0.367  Sum_probs=32.8

Q ss_pred             CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcccc
Q 048080            5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFS   72 (223)
Q Consensus         5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~   72 (223)
                      .+..+++|++|++++|.+. .+++  +...+.++++++++|.++. + ..+.++++|+.+.++++...
T Consensus        58 ~l~~l~~L~~L~ls~n~i~-~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~  120 (227)
T d1h6ua2          58 GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQIT  120 (227)
T ss_dssp             TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCC
T ss_pred             hHhcCCCCcEeecCCceee-cccc--ccccccccccccccccccc-c-cccccccccccccccccccc
Confidence            3455566666666666655 3332  3444455566666655542 2 23455556666666555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=8.5e-15  Score=109.79  Aligned_cols=147  Identities=21%  Similarity=0.222  Sum_probs=121.8

Q ss_pred             CCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcE
Q 048080            8 NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEH   87 (223)
Q Consensus         8 ~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   87 (223)
                      .+.+|+.|++++|.+. .++.  ...++.|++|++++|.+++..  .+..+++|++|++++|.++++ + .+..+++|+.
T Consensus        44 ~L~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~  116 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKS  116 (210)
T ss_dssp             HHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCE
T ss_pred             HhcCccEEECcCCCCC-Cchh--HhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc-c-cccccccccc
Confidence            4678999999999998 6653  456788899999999998644  367899999999999999854 3 5889999999


Q ss_pred             EEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCCC
Q 048080           88 LSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNEN  166 (223)
Q Consensus        88 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~~  166 (223)
                      |++++|.+.. + ..+..++.++.+++++|.+++.  ..+..+++|+.+++++|++++. +.......++.+++++|..
T Consensus       117 L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~~l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         117 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             EECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSCC
T ss_pred             cccccccccc-c-cccccccccccccccccccccc--cccccccccccccccccccccc-ccccCCCCCCEEECCCCCC
Confidence            9999999873 3 3588899999999999999853  3577899999999999999864 3345577889999998864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.59  E-value=4.4e-18  Score=126.97  Aligned_cols=131  Identities=18%  Similarity=0.152  Sum_probs=95.2

Q ss_pred             CCCeeecccC--ccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEE
Q 048080           11 NLILLTTCKN--KLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHL   88 (223)
Q Consensus        11 ~L~~L~l~~n--~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   88 (223)
                      .++.++++++  .+. .+|..+ ..++.|++|+|++|.|+.. + .+..+++|++|++++|.++. ++..+..+++|+.|
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl-~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L   98 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATL-STLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEEL   98 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHH-HHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEE
T ss_pred             ccceeeeecccCchh-hhhhHH-hcccccceeECcccCCCCc-c-cccCCccccChhhccccccc-cccccccccccccc
Confidence            4555666554  343 455544 4456678999999988844 3 47788899999999998874 44445556678999


Q ss_pred             EcccCcccccCCccccCCCCCCEEECCCCccccccc-hhhhCCCCCCEEeccCCcCcccCC
Q 048080           89 SMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFEGKVP  148 (223)
Q Consensus        89 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~~~  148 (223)
                      ++++|.++..  ..+..+++|++|++++|+++.... ..+..+++|+.|++++|++....+
T Consensus        99 ~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_          99 WISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             ECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             cccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcc
Confidence            9999988843  347778889999999998885432 467888899999999998875443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=1e-14  Score=118.14  Aligned_cols=128  Identities=27%  Similarity=0.329  Sum_probs=97.8

Q ss_pred             CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccC--------------------CcCCCCCCCCCeE
Q 048080            5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHF--------------------PAEVGNLKHLVSL   64 (223)
Q Consensus         5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~--------------------~~~~~~l~~L~~L   64 (223)
                      .+..+++|+.|++++|.+. .++.  +...+.|++|++++|.+.+..                    ...+..+++++.|
T Consensus       236 ~l~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L  312 (384)
T d2omza2         236 TLASLTNLTDLDLANNQIS-NLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL  312 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEE
T ss_pred             hhhcccccchhccccCccC-CCCc--ccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeE
Confidence            4556667777777777766 4432  334455566666666655322                    1235667889999


Q ss_pred             eccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCC
Q 048080           65 DISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN  141 (223)
Q Consensus        65 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N  141 (223)
                      ++++|.+++..  .+..+++|+.|++++|++++ ++ .+.++++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       313 ~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         313 TLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             ECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             ECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            99999998764  38899999999999999984 44 58999999999999999997765  899999999999988

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=3.2e-14  Score=107.71  Aligned_cols=150  Identities=21%  Similarity=0.325  Sum_probs=116.8

Q ss_pred             CCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCc
Q 048080            7 GNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLE   86 (223)
Q Consensus         7 ~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~   86 (223)
                      +.+.+|+.|++.+|+++ .++ + +..++.|++|++++|.+.+..+  +..+++++.+++++|.++.+  +.+.++++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~-~l~-~-l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~  110 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVT-TIE-G-VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (227)
T ss_dssp             HHHHTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHcCCcCEEECCCCCCC-cch-h-HhcCCCCcEeecCCceeecccc--cccccccccccccccccccc--cccccccccc
Confidence            45789999999999998 775 3 4567888999999999986544  88999999999999998743  3578889999


Q ss_pred             EEEcccCcccccCC--------------------ccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCccc
Q 048080           87 HLSMQDNSFTGSIP--------------------STLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGK  146 (223)
Q Consensus        87 ~L~L~~N~l~~~~~--------------------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~  146 (223)
                      .++++++...+..+                    ..+..+++|+.|++++|.+++..  .+..+++|+.|++++|++++ 
T Consensus       111 ~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-  187 (227)
T d1h6ua2         111 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-  187 (227)
T ss_dssp             EEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-
T ss_pred             ccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccch--hhcccccceecccCCCccCC-
Confidence            99998887653211                    22455677888999888887443  37888899999999998875 


Q ss_pred             CCchhhhcCCcceeecCCCC
Q 048080          147 VPIEAIFNSTKGISLVGNEN  166 (223)
Q Consensus       147 ~~~~~~~~~l~~l~~~~n~~  166 (223)
                      ++....+..++.+++++|..
T Consensus       188 l~~l~~l~~L~~L~Ls~N~l  207 (227)
T d1h6ua2         188 ISPLASLPNLIEVHLKNNQI  207 (227)
T ss_dssp             CGGGGGCTTCCEEECTTSCC
T ss_pred             ChhhcCCCCCCEEECcCCcC
Confidence            44445567888888888853

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.3e-14  Score=110.79  Aligned_cols=162  Identities=15%  Similarity=0.056  Sum_probs=95.3

Q ss_pred             CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCccccc-CCcCCCCCCCCCeEeccC-ccccccCCcc
Q 048080            1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGH-FPAEVGNLKHLVSLDISS-NMFSGEIPTT   78 (223)
Q Consensus         1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~-n~l~~~~~~~   78 (223)
                      +||+.+.  +++++|++++|.+. .+|...|...+.|++|++++|.+... .+..|.++++++++.+.. |.+....+..
T Consensus        22 ~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~   98 (242)
T d1xwdc1          22 EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA   98 (242)
T ss_dssp             SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS
T ss_pred             CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccc
Confidence            3565553  47788888888887 77777777777778888888877643 345667777777776653 5566666666


Q ss_pred             ccCCCCCcEEEcccCcccccC-------------------------CccccCC-CCCCEEECCCCccccccchhhhCCCC
Q 048080           79 LGGCTSLEHLSMQDNSFTGSI-------------------------PSTLSSL-KSITELDLSRNNLSGHIPQYLENLSF  132 (223)
Q Consensus        79 ~~~l~~L~~L~L~~N~l~~~~-------------------------~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~  132 (223)
                      |.++++|+.+++++|.++...                         +..|.++ ..++.+++++|++++..+..+ ..++
T Consensus        99 ~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~  177 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQ  177 (242)
T ss_dssp             EECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCC
T ss_pred             ccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc-cchh
Confidence            777777777777777665321                         1222222 245666777776664433333 3333


Q ss_pred             CCEE-eccCCcCcccCCc-hhhhcCCcceeecCCCC
Q 048080          133 LSFL-NLSYNHFEGKVPI-EAIFNSTKGISLVGNEN  166 (223)
Q Consensus       133 L~~l-~l~~N~l~~~~~~-~~~~~~l~~l~~~~n~~  166 (223)
                      +..+ ++++|.++...+. .....+++.+++++|..
T Consensus       178 l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l  213 (242)
T d1xwdc1         178 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI  213 (242)
T ss_dssp             EEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCC
T ss_pred             hhccccccccccccccHHHhcCCCCCCEEECCCCcC
Confidence            3333 3455555532221 12345555666666543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8.1e-14  Score=106.20  Aligned_cols=136  Identities=13%  Similarity=0.144  Sum_probs=104.2

Q ss_pred             CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcccccc-CCccccCC
Q 048080            4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGE-IPTTLGGC   82 (223)
Q Consensus         4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l   82 (223)
                      ...+.+. .+.++.+++.++ ++|++++   ..+++|++++|.++...+.+|.++++|++|++++|.+... .+..|.++
T Consensus         3 ~~~C~C~-~~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l   77 (242)
T d1xwdc1           3 HRICHCS-NRVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL   77 (242)
T ss_dssp             CSSEEEC-SSEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESC
T ss_pred             CCcCCCc-CCEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccc
Confidence            3445554 367888888888 9998764   4679999999999977778899999999999999998764 45579999


Q ss_pred             CCCcEEEccc-CcccccCCccccCCCCCCEEECCCCccccccchh-hhCCCCCCEEeccCCcCc
Q 048080           83 TSLEHLSMQD-NSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQY-LENLSFLSFLNLSYNHFE  144 (223)
Q Consensus        83 ~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~l~l~~N~l~  144 (223)
                      +.++.+++.. |++....+..|.++++|+++++++|.+....+.. +..++.+..+...++.+.
T Consensus        78 ~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~  141 (242)
T d1xwdc1          78 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH  141 (242)
T ss_dssp             TTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCC
T ss_pred             cccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccc
Confidence            9999999864 6888788888999999999999999987443321 223344444444444444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.46  E-value=1.7e-15  Score=112.72  Aligned_cols=135  Identities=20%  Similarity=0.180  Sum_probs=107.1

Q ss_pred             CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080            2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG   81 (223)
Q Consensus         2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   81 (223)
                      +|.+++.+++|++|++++|+|. .++.  +..++.|++|++++|.++ .++..+..+++|++|++++|.++.+  +.+..
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~~--l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~  113 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KISS--LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEK  113 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCCC--HHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHH
T ss_pred             hhhHHhcccccceeECcccCCC-Cccc--ccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccc
Confidence            3456888999999999999998 7863  556778899999999998 4455455567899999999999864  35788


Q ss_pred             CCCCcEEEcccCcccccCC-ccccCCCCCCEEECCCCccccccch----------hhhCCCCCCEEeccCCcCc
Q 048080           82 CTSLEHLSMQDNSFTGSIP-STLSSLKSITELDLSRNNLSGHIPQ----------YLENLSFLSFLNLSYNHFE  144 (223)
Q Consensus        82 l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~----------~~~~l~~L~~l~l~~N~l~  144 (223)
                      +++|+.|++++|+++.... ..+..+++|+.|++++|.+....+.          .+..+|+|+.||  +.+++
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            8999999999999985432 4688999999999999998755433          256789999886  44444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2e-11  Score=95.23  Aligned_cols=157  Identities=20%  Similarity=0.203  Sum_probs=96.9

Q ss_pred             CCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCc-cccccC-CccccCCCCC
Q 048080            8 NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSN-MFSGEI-PTTLGGCTSL   85 (223)
Q Consensus         8 ~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L   85 (223)
                      ...+|++|+++++.+.++....++...+.|++|+++++.++......+..+++|++|+++++ .++... .....++++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            45678888888887764444556666777788888888776655566667777888887774 343211 1112345666


Q ss_pred             cEEEcccC-cccc----------------------------c-CCccccCCCCCCEEECCCC-ccccccchhhhCCCCCC
Q 048080           86 EHLSMQDN-SFTG----------------------------S-IPSTLSSLKSITELDLSRN-NLSGHIPQYLENLSFLS  134 (223)
Q Consensus        86 ~~L~L~~N-~l~~----------------------------~-~~~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~  134 (223)
                      ++|+++++ .++.                            . +......+++|++|++++| .+++.....+..+++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            66666653 2221                            0 0011234678888888875 47766667788888888


Q ss_pred             EEeccCC-cCcccCC-chhhhcCCcceeecCC
Q 048080          135 FLNLSYN-HFEGKVP-IEAIFNSTKGISLVGN  164 (223)
Q Consensus       135 ~l~l~~N-~l~~~~~-~~~~~~~l~~l~~~~n  164 (223)
                      +|+++++ .++.... .....+.++.+++.++
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            8888884 4543222 1233456667776654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.10  E-value=2.2e-09  Score=84.86  Aligned_cols=97  Identities=23%  Similarity=0.247  Sum_probs=76.9

Q ss_pred             CCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEE
Q 048080           10 QNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLS   89 (223)
Q Consensus        10 ~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   89 (223)
                      .++++|++++++++ .+|+    .++.|++|++++|.|+ .+|..   +.+|+.|++++|.++.+ ++ +  .+.|++|+
T Consensus        38 ~~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l-~~-l--p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPE----LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKAL-SD-L--PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCC-CS-C--CTTCCEEE
T ss_pred             cCCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchh-hh-h--cccccccc
Confidence            46889999999998 8885    3567899999999999 55654   46899999999988743 32 1  14699999


Q ss_pred             cccCcccccCCccccCCCCCCEEECCCCcccc
Q 048080           90 MQDNSFTGSIPSTLSSLKSITELDLSRNNLSG  121 (223)
Q Consensus        90 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  121 (223)
                      +++|.+. .+|. +..+++|++|++++|.+..
T Consensus       105 L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         105 VSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             CCSSCCS-SCCC-CTTCTTCCEEECCSSCCSC
T ss_pred             ccccccc-cccc-hhhhccceeeccccccccc
Confidence            9999998 5554 6788999999999998773

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.93  E-value=5.6e-11  Score=94.85  Aligned_cols=162  Identities=24%  Similarity=0.247  Sum_probs=85.2

Q ss_pred             CCCCCCCCCeeecccCccccCCChh---hhhccCCceEEEccCCccccc-------------------------------
Q 048080            5 SLGNCQNLILLTTCKNKLSGTVPRQ---LLRIITRSVLLDLFDNLLSGH-------------------------------   50 (223)
Q Consensus         5 ~~~~l~~L~~L~l~~n~i~~~~p~~---~~~~~~~l~~L~L~~n~l~~~-------------------------------   50 (223)
                      ++..+++|+.|++++|.+...-...   .....+.|+.|++++|.+...                               
T Consensus        88 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~  167 (344)
T d2ca6a1          88 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR  167 (344)
T ss_dssp             HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred             HHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccc
Confidence            3455677888888888776321111   122345567777777765311                               


Q ss_pred             ----------CCcCCCCCCCCCeEeccCcccccc-----CCccccCCCCCcEEEcccCccccc----CCccccCCCCCCE
Q 048080           51 ----------FPAEVGNLKHLVSLDISSNMFSGE-----IPTTLGGCTSLEHLSMQDNSFTGS----IPSTLSSLKSITE  111 (223)
Q Consensus        51 ----------~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~  111 (223)
                                +...+...+.|++|++++|.+...     ....+..+++|+.|++++|.++..    +...+...++|++
T Consensus       168 n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~  247 (344)
T d2ca6a1         168 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  247 (344)
T ss_dssp             SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             ccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchh
Confidence                      000112334566666666665431     223345566677777777766532    2233455666777


Q ss_pred             EECCCCccccccc----hhhhC--CCCCCEEeccCCcCcccCCc--h----hhhcCCcceeecCCCC
Q 048080          112 LDLSRNNLSGHIP----QYLEN--LSFLSFLNLSYNHFEGKVPI--E----AIFNSTKGISLVGNEN  166 (223)
Q Consensus       112 L~L~~N~l~~~~p----~~~~~--l~~L~~l~l~~N~l~~~~~~--~----~~~~~l~~l~~~~n~~  166 (223)
                      |++++|.+++.-.    ..+..  .+.|+.|++++|.+......  .    .....++.+++++|..
T Consensus       248 L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             hhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            7777776664322    22222  24567777777766532110  0    1223566667766654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.92  E-value=2.4e-08  Score=78.69  Aligned_cols=84  Identities=21%  Similarity=0.193  Sum_probs=66.3

Q ss_pred             CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080            1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG   80 (223)
Q Consensus         1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   80 (223)
                      +||+.   +++|++|++++|+|+ ++|+.    ...|+.|++++|.++. ++..   .+.|++|++++|.+... |. +.
T Consensus        52 ~lp~~---~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~~-l~~l---p~~L~~L~L~~n~l~~l-p~-~~  117 (353)
T d1jl5a_          52 SLPEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKL-PE-LQ  117 (353)
T ss_dssp             CCCSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSC-CC-CT
T ss_pred             CCCCC---CCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccch-hhhh---ccccccccccccccccc-cc-hh
Confidence            35643   468999999999998 89864    4568999999999883 3321   24699999999999854 43 67


Q ss_pred             CCCCCcEEEcccCccccc
Q 048080           81 GCTSLEHLSMQDNSFTGS   98 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~~~   98 (223)
                      .+++|+.|++++|.+...
T Consensus       118 ~l~~L~~L~l~~~~~~~~  135 (353)
T d1jl5a_         118 NSSFLKIIDVDNNSLKKL  135 (353)
T ss_dssp             TCTTCCEEECCSSCCSCC
T ss_pred             hhccceeecccccccccc
Confidence            899999999999988743

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.89  E-value=7.7e-10  Score=88.07  Aligned_cols=138  Identities=17%  Similarity=0.236  Sum_probs=97.8

Q ss_pred             CCCCCeeecccCccccCCChh---hhhccCCceEEEccCCccccc-----CCcCCCCCCCCCeEeccCcccccc----CC
Q 048080            9 CQNLILLTTCKNKLSGTVPRQ---LLRIITRSVLLDLFDNLLSGH-----FPAEVGNLKHLVSLDISSNMFSGE----IP   76 (223)
Q Consensus         9 l~~L~~L~l~~n~i~~~~p~~---~~~~~~~l~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~----~~   76 (223)
                      .+.|+.+++++|.+...--..   .....+.+++|++++|.+...     ....+..+++|+.|++++|.++..    ..
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            456677777777665221111   123456789999999998642     334577889999999999998643    23


Q ss_pred             ccccCCCCCcEEEcccCcccccCCc----ccc--CCCCCCEEECCCCccccc----cchhhh-CCCCCCEEeccCCcCcc
Q 048080           77 TTLGGCTSLEHLSMQDNSFTGSIPS----TLS--SLKSITELDLSRNNLSGH----IPQYLE-NLSFLSFLNLSYNHFEG  145 (223)
Q Consensus        77 ~~~~~l~~L~~L~L~~N~l~~~~~~----~~~--~l~~L~~L~L~~N~l~~~----~p~~~~-~l~~L~~l~l~~N~l~~  145 (223)
                      ..+..+++|+.|++++|.+++....    .+.  ..+.|++|++++|.++..    +...+. ..+.|+.|++++|.+..
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            4567889999999999999854322    232  236799999999998753    233343 57889999999999975


Q ss_pred             c
Q 048080          146 K  146 (223)
Q Consensus       146 ~  146 (223)
                      .
T Consensus       317 ~  317 (344)
T d2ca6a1         317 E  317 (344)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=7.7e-11  Score=84.23  Aligned_cols=89  Identities=19%  Similarity=0.078  Sum_probs=47.5

Q ss_pred             CCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccC--CccccCCCCCCEEECCCCccccccchhhhCCCCCCE
Q 048080           58 LKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI--PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSF  135 (223)
Q Consensus        58 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  135 (223)
                      +..+..++..++... ..+..+..+++|++|+|++|+++...  +..+..+++|+.|+|++|.++...+-.+.....|+.
T Consensus        41 ~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~  119 (162)
T d1koha1          41 QNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE  119 (162)
T ss_dssp             TTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSS
T ss_pred             ccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccce
Confidence            333334444333332 22333445666666777777666432  233455666777777777766443333334445666


Q ss_pred             EeccCCcCcccC
Q 048080          136 LNLSYNHFEGKV  147 (223)
Q Consensus       136 l~l~~N~l~~~~  147 (223)
                      +++++|++.+..
T Consensus       120 L~L~~Npl~~~~  131 (162)
T d1koha1         120 LWLDGNSLSDTF  131 (162)
T ss_dssp             CCCTTSTTSSSS
T ss_pred             eecCCCCcCcCc
Confidence            777777666543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.9e-10  Score=92.96  Aligned_cols=112  Identities=25%  Similarity=0.291  Sum_probs=81.5

Q ss_pred             CCCCeeecccCccccCCChhhhhccCCceEEEccCCcccc----cCCcCCCCCCCCCeEeccCccccccC----Ccccc-
Q 048080           10 QNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSG----HFPAEVGNLKHLVSLDISSNMFSGEI----PTTLG-   80 (223)
Q Consensus        10 ~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~-   80 (223)
                      ++|+.||+++|++++.-=..++...+.+++|+|++|.++.    .++..+..+++|++|+|++|.++...    ...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            4688999999999842223455567778999999998873    23345677889999999999886321    12222 


Q ss_pred             CCCCCcEEEcccCccccc----CCccccCCCCCCEEECCCCcccc
Q 048080           81 GCTSLEHLSMQDNSFTGS----IPSTLSSLKSITELDLSRNNLSG  121 (223)
Q Consensus        81 ~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~  121 (223)
                      ...+|+.|++++|.++..    ++.++..+++|++|++++|.++.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            235799999999998743    34567788899999999998764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.3e-09  Score=88.94  Aligned_cols=160  Identities=18%  Similarity=0.046  Sum_probs=108.7

Q ss_pred             CCCCCCCeeecccCccccCCChhh---hhccCCceEEEccCCcccccCCcC-----CCCCCCCCeEeccCccccccCCcc
Q 048080            7 GNCQNLILLTTCKNKLSGTVPRQL---LRIITRSVLLDLFDNLLSGHFPAE-----VGNLKHLVSLDISSNMFSGEIPTT   78 (223)
Q Consensus         7 ~~l~~L~~L~l~~n~i~~~~p~~~---~~~~~~l~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~   78 (223)
                      .....++.+++++|.+........   ....+.++.+++++|.+.......     ......|+.+++++|.++......
T Consensus       252 ~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~  331 (460)
T d1z7xw1         252 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH  331 (460)
T ss_dssp             STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhh
Confidence            446789999999998863221111   234567799999999886322211     123468999999999887543333


Q ss_pred             ----ccCCCCCcEEEcccCccccc----CCcccc-CCCCCCEEECCCCccccc----cchhhhCCCCCCEEeccCCcCcc
Q 048080           79 ----LGGCTSLEHLSMQDNSFTGS----IPSTLS-SLKSITELDLSRNNLSGH----IPQYLENLSFLSFLNLSYNHFEG  145 (223)
Q Consensus        79 ----~~~l~~L~~L~L~~N~l~~~----~~~~~~-~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~l~l~~N~l~~  145 (223)
                          +....+|++|+|++|.++..    ++..+. ..+.|++|+|++|.++..    +...+..+++|++|++++|+++.
T Consensus       332 l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         332 FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             cccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence                34557899999999998743    223332 456799999999999853    44567778999999999999875


Q ss_pred             cCCch------hhhcCCcceeecCCCC
Q 048080          146 KVPIE------AIFNSTKGISLVGNEN  166 (223)
Q Consensus       146 ~~~~~------~~~~~l~~l~~~~n~~  166 (223)
                      .....      .....++.+++.++.+
T Consensus       412 ~g~~~l~~~l~~~~~~L~~l~l~~~~~  438 (460)
T d1z7xw1         412 AGILQLVESVRQPGCLLEQLVLYDIYW  438 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             HHHHHHHHHHHhCCCccCEEECCCCCC
Confidence            22111      1123567788877765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=6.3e-10  Score=79.35  Aligned_cols=125  Identities=18%  Similarity=0.143  Sum_probs=82.2

Q ss_pred             CCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccC--CccccCCCCCcEE
Q 048080           11 NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEI--PTTLGGCTSLEHL   88 (223)
Q Consensus        11 ~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L   88 (223)
                      ..+.|++++....   +. + .....+..++..++... ..+..+..+++|++|++++|.++...  +..+..+++|+.|
T Consensus        23 ~~~~Ldls~l~~~---~~-l-~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L   96 (162)
T d1koha1          23 SQQALDLKGLRSD---PD-L-VAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL   96 (162)
T ss_dssp             SSCCBCCCCCSSC---TT-T-TTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCC
T ss_pred             hhCeeecccCCCC---ch-h-hhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccc
Confidence            3455666655432   21 1 11222233444444333 34444567889999999999998653  3456788999999


Q ss_pred             EcccCcccccCCccccCCCCCCEEECCCCccccccc-------hhhhCCCCCCEEeccCCcC
Q 048080           89 SMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP-------QYLENLSFLSFLNLSYNHF  143 (223)
Q Consensus        89 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-------~~~~~l~~L~~l~l~~N~l  143 (223)
                      ++++|.++...+-.+.....|+.+++++|.+.....       ..+..+|+|+.||  +..+
T Consensus        97 ~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD--g~~v  156 (162)
T d1koha1          97 NLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD--GHEL  156 (162)
T ss_dssp             CCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET--TEEC
T ss_pred             ccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC--cCCC
Confidence            999999996544344455679999999999986543       3366789999886  5544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=9.9e-09  Score=79.55  Aligned_cols=132  Identities=18%  Similarity=0.212  Sum_probs=80.5

Q ss_pred             CCceEEEccCCccccc-CCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccC-cccccC-CccccCCCCCCE
Q 048080           35 TRSVLLDLFDNLLSGH-FPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDN-SFTGSI-PSTLSSLKSITE  111 (223)
Q Consensus        35 ~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~  111 (223)
                      ..|++|+++++.+... +...+..+++|++|+++++.+++..+..+..+++|+.|+++++ .++... ......+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            4568888888876533 2344667788888888888877666667777888888888874 455221 122345678888


Q ss_pred             EECCCC-ccccc-cchhhhC-CCCCCEEeccCC--cCccc-CC-chhhhcCCcceeecCCCC
Q 048080          112 LDLSRN-NLSGH-IPQYLEN-LSFLSFLNLSYN--HFEGK-VP-IEAIFNSTKGISLVGNEN  166 (223)
Q Consensus       112 L~L~~N-~l~~~-~p~~~~~-l~~L~~l~l~~N--~l~~~-~~-~~~~~~~l~~l~~~~n~~  166 (223)
                      |+++++ .++.. ....+.. .+.|+.|++++.  .++.. +. .....+.++.+++.+++.
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~  187 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM  187 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccC
Confidence            888875 44422 2223333 467888888764  23221 11 112345677777766544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.16  E-value=6.4e-07  Score=63.55  Aligned_cols=87  Identities=18%  Similarity=0.195  Sum_probs=45.6

Q ss_pred             CCCCCCCCeEeccCccccccCC----ccccCCCCCcEEEcccCcccccC----CccccCCCCCCEEECCCCccccc----
Q 048080           55 VGNLKHLVSLDISSNMFSGEIP----TTLGGCTSLEHLSMQDNSFTGSI----PSTLSSLKSITELDLSRNNLSGH----  122 (223)
Q Consensus        55 ~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~----  122 (223)
                      +...++|++|++++|.+.....    ..+...+.|+.|++++|.++...    ..++..-++|++|++++|.+...    
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            3344556666666666543211    22334456666666666665321    22344456677777766654321    


Q ss_pred             ---cchhhhCCCCCCEEeccCC
Q 048080          123 ---IPQYLENLSFLSFLNLSYN  141 (223)
Q Consensus       123 ---~p~~~~~l~~L~~l~l~~N  141 (223)
                         +...+...+.|+.++++.+
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHhCCCccEeeCcCC
Confidence               2334445566666666544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.89  E-value=1.4e-06  Score=61.78  Aligned_cols=112  Identities=13%  Similarity=0.090  Sum_probs=77.3

Q ss_pred             CCCCCCeeecccC-ccccCCChhh---hhccCCceEEEccCCcccccCC----cCCCCCCCCCeEeccCccccccC----
Q 048080            8 NCQNLILLTTCKN-KLSGTVPRQL---LRIITRSVLLDLFDNLLSGHFP----AEVGNLKHLVSLDISSNMFSGEI----   75 (223)
Q Consensus         8 ~l~~L~~L~l~~n-~i~~~~p~~~---~~~~~~l~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~----   75 (223)
                      +.++|+.|+++++ .+..+.-..+   ....+.|++|++++|.+.....    ..+...+.|++|++++|.++...    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            5688999999974 4543211122   2334668999999999874322    23445688999999999987532    


Q ss_pred             CccccCCCCCcEEEcccCccccc-------CCccccCCCCCCEEECCCCcc
Q 048080           76 PTTLGGCTSLEHLSMQDNSFTGS-------IPSTLSSLKSITELDLSRNNL  119 (223)
Q Consensus        76 ~~~~~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~L~~N~l  119 (223)
                      ...+...++|+.|++++|++...       +...+..-++|+.|+++.+..
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            22456668899999999976532       233455568899999987654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.56  E-value=1.2e-05  Score=56.58  Aligned_cols=110  Identities=16%  Similarity=0.171  Sum_probs=62.2

Q ss_pred             cCCceEEEccC-Cccccc----CCcCCCCCCCCCeEeccCccccccCC----ccccCCCCCcEEEcccCccccc----CC
Q 048080           34 ITRSVLLDLFD-NLLSGH----FPAEVGNLKHLVSLDISSNMFSGEIP----TTLGGCTSLEHLSMQDNSFTGS----IP  100 (223)
Q Consensus        34 ~~~l~~L~L~~-n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~----~~  100 (223)
                      .+.|++|++++ +.++..    +..++...++|++|++++|.++....    ..+....+++.+++++|.++..    +.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            34556666665 334311    12234456677777777777654322    2344556777778777776532    22


Q ss_pred             ccccCCCCCCEEEC--CCCcccc----ccchhhhCCCCCCEEeccCCcC
Q 048080          101 STLSSLKSITELDL--SRNNLSG----HIPQYLENLSFLSFLNLSYNHF  143 (223)
Q Consensus       101 ~~~~~l~~L~~L~L--~~N~l~~----~~p~~~~~l~~L~~l~l~~N~l  143 (223)
                      ..+...++|+.++|  ++|.+..    .+...+...+.|+.|+++.+..
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            34555677776555  4556643    2344555677788887766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.25  E-value=2.2e-05  Score=55.09  Aligned_cols=114  Identities=16%  Similarity=0.132  Sum_probs=77.7

Q ss_pred             CCCCCCCeeeccc-CccccCCChhhh---hccCCceEEEccCCcccccC----CcCCCCCCCCCeEeccCccccccC---
Q 048080            7 GNCQNLILLTTCK-NKLSGTVPRQLL---RIITRSVLLDLFDNLLSGHF----PAEVGNLKHLVSLDISSNMFSGEI---   75 (223)
Q Consensus         7 ~~l~~L~~L~l~~-n~i~~~~p~~~~---~~~~~l~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~---   75 (223)
                      .+.+.|++|++++ +.+....-..+.   ...+.|++|++++|.+....    ...+...++++.+++++|.+....   
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4668999999997 456532211222   34567899999999886432    234456689999999999886432   


Q ss_pred             -CccccCCCCCcEEEc--ccCccccc----CCccccCCCCCCEEECCCCccc
Q 048080           76 -PTTLGGCTSLEHLSM--QDNSFTGS----IPSTLSSLKSITELDLSRNNLS  120 (223)
Q Consensus        76 -~~~~~~l~~L~~L~L--~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~  120 (223)
                       ...+...++|+.++|  ++|.+...    +...+...++|+.|++..+...
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence             245667788987655  56677542    3344567789999999877654