Citrus Sinensis ID: 048096
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 530 | ||||||
| 255540303 | 572 | conserved hypothetical protein [Ricinus | 0.998 | 0.924 | 0.717 | 0.0 | |
| 224136085 | 559 | predicted protein [Populus trichocarpa] | 0.988 | 0.937 | 0.707 | 0.0 | |
| 297734384 | 562 | unnamed protein product [Vitis vinifera] | 0.981 | 0.925 | 0.686 | 0.0 | |
| 297797335 | 559 | hypothetical protein ARALYDRAFT_332561 [ | 0.964 | 0.914 | 0.653 | 0.0 | |
| 449469771 | 559 | PREDICTED: DUF246 domain-containing prot | 0.983 | 0.932 | 0.637 | 0.0 | |
| 449521379 | 559 | PREDICTED: DUF246 domain-containing prot | 0.983 | 0.932 | 0.631 | 0.0 | |
| 15242752 | 559 | O-fucosyltransferase family protein [Ara | 0.958 | 0.908 | 0.642 | 0.0 | |
| 52354589 | 559 | hypothetical protein AT5G63390 [Arabidop | 0.769 | 0.729 | 0.757 | 0.0 | |
| 225456264 | 433 | PREDICTED: DUF246 domain-containing prot | 0.743 | 0.909 | 0.771 | 0.0 | |
| 255559237 | 589 | conserved hypothetical protein [Ricinus | 0.983 | 0.884 | 0.545 | 1e-155 |
| >gi|255540303|ref|XP_002511216.1| conserved hypothetical protein [Ricinus communis] gi|223550331|gb|EEF51818.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/538 (71%), Positives = 446/538 (82%), Gaps = 9/538 (1%)
Query: 1 MARARNIKNSFITQTPSPLFQLFSISPFTSLFLSPKKSPRSHQRLF-----TSQNFAIFF 55
MARARNIKN F T PSP+F L S+SP TSL SPKKSPR+H F TS+ F+IFF
Sbjct: 1 MARARNIKNPFFTLIPSPVFPLVSVSPLTSLLFSPKKSPRNHIDKFFSLSTTSRTFSIFF 60
Query: 56 LSLLLTFTFLGVSVLNFIQSYQDPPPCSLISPSSQNPLSSN---SAMLFASLASSNTYNE 112
+SLL++F+ LG+ +L+ QD C+ S + + S L AS +S + +
Sbjct: 61 ISLLVSFSLLGMFILSLFPISQDSVSCNSFISPSSSLSFPSKSISHRLLASFSSRSLSHV 120
Query: 113 DDHEPAGLANSVLVPLPAQLVAGNLSKEEREFWQQPGSEGYKPCLDFSLAYRRKSAKISK 172
+P GLA SV+VPLP Q V GN+SKEE EFW+QP EGYKPCLDFS+ YR+ S++ISK
Sbjct: 121 KGDKP-GLAKSVMVPLPVQGVTGNVSKEESEFWEQPDGEGYKPCLDFSINYRKASSRISK 179
Query: 173 EKRKFLVVVASGGLNQQRNQIVDAVVIARILEAALVVPVLQVNLIWGDESEFSDIFNVKH 232
EKR+FLVVVASGGLNQQR QIVDAVVIARILEAALVVPVLQVNLIWGD+SEFSDIF+V+H
Sbjct: 180 EKRRFLVVVASGGLNQQRTQIVDAVVIARILEAALVVPVLQVNLIWGDDSEFSDIFDVEH 239
Query: 233 FKRTLQADVRVVSSLPSTHLMSRQSIENQLPYNISPFWIRARFFKQLNEEGVLVLKGLDT 292
FKR LQADVR+VSSLPSTHLMSRQSIENQ+P ++SP WIRARF ++LNEEGVLVLKGL +
Sbjct: 240 FKRILQADVRIVSSLPSTHLMSRQSIENQIPIDVSPLWIRARFSRKLNEEGVLVLKGLAS 299
Query: 293 KLSKNLPPDLQKLRCKVAFHALRFAAPIQELGNRLARRMWIEGPYIALHLRMEKDVWVRT 352
KLSKNLPPDLQKLRCKVAFHALRFAAPIQELGNRLARRMWIEGPYIALHLR+EKDVWVR+
Sbjct: 300 KLSKNLPPDLQKLRCKVAFHALRFAAPIQELGNRLARRMWIEGPYIALHLRLEKDVWVRS 359
Query: 353 GCLTGLGLEYDEIIAKIRESQPEYLTGKLNMSHIQRRLAGLCPLTASEIARFLKALGAPS 412
GCLTGLG EYD II+++R SQ EYLTG+LNMSH++RRLAGLCPL A E+AR LKALG S
Sbjct: 360 GCLTGLGAEYDRIISQVRNSQTEYLTGRLNMSHMERRLAGLCPLNAIEMARLLKALGVSS 419
Query: 413 SARIYIAGGEPFGGHQALQPLAAEFPNLVTKEMLAQEGELSPYVNRSSSLAAIDYIVSLN 472
+ARIYIAGGEPFGG Q QPL AEF NLVTK+MLA+EGEL PY+ +SS++AAIDYIVSL+
Sbjct: 420 NARIYIAGGEPFGGVQTAQPLVAEFHNLVTKDMLAREGELLPYIKKSSAMAAIDYIVSLS 479
Query: 473 SNVFVPSHGGNMGRAMQGHRAYVGHRKYIKPNKKAMLPFFEDSSISDEEFGSIIRKIH 530
SNVF+PSHGGNMGR MQGHRAYVGH K IKPNK++M+PF E SS+SD EFGSI R +H
Sbjct: 480 SNVFIPSHGGNMGRLMQGHRAYVGHWKCIKPNKRSMIPFLEKSSLSDAEFGSIARMLH 537
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224136085|ref|XP_002322236.1| predicted protein [Populus trichocarpa] gi|222869232|gb|EEF06363.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|297734384|emb|CBI15631.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297797335|ref|XP_002866552.1| hypothetical protein ARALYDRAFT_332561 [Arabidopsis lyrata subsp. lyrata] gi|297312387|gb|EFH42811.1| hypothetical protein ARALYDRAFT_332561 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|449469771|ref|XP_004152592.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449521379|ref|XP_004167707.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|15242752|ref|NP_201144.1| O-fucosyltransferase family protein [Arabidopsis thaliana] gi|9758280|dbj|BAB08804.1| auxin-independent growth promoter-like protein [Arabidopsis thaliana] gi|332010359|gb|AED97742.1| O-fucosyltransferase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|52354589|gb|AAU44615.1| hypothetical protein AT5G63390 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|225456264|ref|XP_002279576.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255559237|ref|XP_002520639.1| conserved hypothetical protein [Ricinus communis] gi|223540159|gb|EEF41735.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 530 | ||||||
| TAIR|locus:2167311 | 559 | AT5G63390 [Arabidopsis thalian | 0.769 | 0.729 | 0.757 | 1.5e-175 | |
| TAIR|locus:2050564 | 573 | AT2G44500 [Arabidopsis thalian | 0.735 | 0.680 | 0.620 | 4.6e-135 | |
| TAIR|locus:2077482 | 579 | AT3G07900 [Arabidopsis thalian | 0.732 | 0.670 | 0.610 | 1.2e-127 | |
| TAIR|locus:2157096 | 652 | AT5G35570 [Arabidopsis thalian | 0.701 | 0.570 | 0.385 | 8.2e-67 | |
| TAIR|locus:2174754 | 522 | AT5G64600 [Arabidopsis thalian | 0.741 | 0.752 | 0.384 | 1.7e-66 | |
| TAIR|locus:2014619 | 572 | AT1G76270 [Arabidopsis thalian | 0.722 | 0.669 | 0.391 | 6.7e-65 | |
| TAIR|locus:2009467 | 565 | AT1G22460 [Arabidopsis thalian | 0.677 | 0.635 | 0.391 | 8.5e-65 | |
| TAIR|locus:2143181 | 508 | AT5G15740 [Arabidopsis thalian | 0.658 | 0.687 | 0.373 | 1.6e-63 | |
| TAIR|locus:2080285 | 638 | AT3G54100 [Arabidopsis thalian | 0.716 | 0.595 | 0.368 | 2e-63 | |
| TAIR|locus:2150129 | 631 | FRB1 "FRIABLE 1" [Arabidopsis | 0.709 | 0.595 | 0.386 | 4.2e-63 |
| TAIR|locus:2167311 AT5G63390 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1664 (590.8 bits), Expect = 1.5e-175, Sum P(2) = 1.5e-175
Identities = 310/409 (75%), Positives = 366/409 (89%)
Query: 123 SVLVPLPAQLV-AGNLSKEEREFWQQPGSEGYKPCLDFSLAYRRKSAKISKEKRKFLVVV 181
S L PLPA+ +GN+++EE+EFW+QP EGYKPCLDFSL Y++KSA +SKEK++FLVVV
Sbjct: 112 STLFPLPARGGHSGNMTEEEKEFWKQPNGEGYKPCLDFSLEYKKKSASVSKEKKRFLVVV 171
Query: 182 ASGGLNQQRNQIVDAVVIARILEAALVVPVLQVNLIWGDESEFSDIFNVKHFKRTLQADV 241
SGGLNQQRNQIVDAVVIA ILEAALVVPVLQVN +WGDESEFSD+F+V+HFK+TL++DV
Sbjct: 172 VSGGLNQQRNQIVDAVVIAMILEAALVVPVLQVNRVWGDESEFSDLFDVEHFKKTLRSDV 231
Query: 242 RVVSSLPSTHLMSRQSIENQLPYNISPFWIRARFFKQLNEEGVLVLKGLDTKLSKNLPPD 301
R+VSSLPSTHLMSRQ+IENQ+P+++SP WIRA++FKQLNEEG+LVLKGLD+KL+KNLPPD
Sbjct: 232 RIVSSLPSTHLMSRQTIENQIPWDVSPVWIRAKYFKQLNEEGLLVLKGLDSKLAKNLPPD 291
Query: 302 LQKLRCKVAFHALRFAAPIQELGNRLARRMWIEGPYIALHLRMEKDVWVRTGCLTGLGLE 361
LQKLRCKVAFHALRFAAPI+ LGN+L RRMWIEGPYIALHLR+EKDVWVRTGCLTGLG E
Sbjct: 292 LQKLRCKVAFHALRFAAPIENLGNKLTRRMWIEGPYIALHLRLEKDVWVRTGCLTGLGSE 351
Query: 362 YDEIIAKIRESQPEYLTGKLNMSHIQRRLAGLCPLTASEIARFLKALGAPSSARIYIAGG 421
+D IIA+ R SQP YLTG+LN+++ +RRLAG CPL EIAR LKALGAPS+A IYIAGG
Sbjct: 352 FDRIIAETRTSQPRYLTGRLNLTYTERRLAGFCPLNVYEIARLLKALGAPSNASIYIAGG 411
Query: 422 EPFGGHQALQPLAAEFPNLVTKEMLAQEGELSPYVNRSSSLAAIDYIVSLNSNVFVPSHG 481
EPFGG +AL+PLA EF NLVTKE LA +GEL PY NRSS+LAAIDYIVSL+S+VF+PSHG
Sbjct: 412 EPFGGSRALEPLAKEFSNLVTKETLAHKGELLPYTNRSSALAAIDYIVSLSSDVFIPSHG 471
Query: 482 GNMGRAMQGHRAYVGHRKYIKPNKKAMLPFFEDSSISDEEFGSIIRKIH 530
GNM +AMQG+RAYVGHRK+I PNK+AMLP E+SS+SD E + RK+H
Sbjct: 472 GNMAKAMQGNRAYVGHRKFIMPNKRAMLPLMENSSVSDAELSFLTRKLH 520
|
|
| TAIR|locus:2050564 AT2G44500 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2077482 AT3G07900 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2157096 AT5G35570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2174754 AT5G64600 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2014619 AT1G76270 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2009467 AT1G22460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2143181 AT5G15740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2080285 AT3G54100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2150129 FRB1 "FRIABLE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00017906001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (562 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 530 | |||
| cd11299 | 290 | cd11299, O-FucT_plant, GDP-fucose protein O-fucosy | 1e-130 | |
| pfam10250 | 315 | pfam10250, O-FucT, GDP-fucose protein O-fucosyltra | 4e-97 | |
| cd11296 | 206 | cd11296, O-FucT_like, GDP-fucose protein O-fucosyl | 1e-09 |
| >gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily | Back alignment and domain information |
|---|
Score = 380 bits (979), Expect = e-130
Identities = 146/326 (44%), Positives = 196/326 (60%), Gaps = 40/326 (12%)
Query: 177 FLVVVASGGLNQQRNQIVDAVVIARILEAALVVPVLQVNLIWGDESEFSDIFNVKHFKRT 236
+L+V A+GGLNQQR+QI DAV +AR+L A LV+P L N +WGD S+F DI++V HF ++
Sbjct: 1 YLLVSANGGLNQQRSQICDAVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKS 60
Query: 237 LQADVRVVSSLPSTHLMSRQSIEN-QLPYNISPFWIRARFFKQLNEEGVLVLKGLDTKLS 295
L+ DVRVV LP + I ++P SP + L + GV+ L D++L+
Sbjct: 61 LKDDVRVVKKLPEELASKKPEITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPFDSRLA 120
Query: 296 -KNLPPDLQKLRCKVAFHALRFAAPIQELGNRLARRMW-IEGPYIALHLRMEKDVWVRTG 353
LPP++Q+LRC+V FHALRF I+ELG++L R+ GP++ALHLR EKD+ +G
Sbjct: 121 NDLLPPEIQRLRCRVNFHALRFVPEIEELGDKLVDRLREAGGPFLALHLRFEKDMLAFSG 180
Query: 354 CLTGLGLEYDEIIAKIRESQPEYLTGKLNMSHIQRRLAGLCPLTASEIARFLKALGAPSS 413
C G CPLT E+ L+ALG P S
Sbjct: 181 C-------------------------------------GKCPLTPEEVGLLLRALGFPRS 203
Query: 414 ARIYIAGGEPFGGHQALQPLAAEFPNLVTKEMLAQEGELSPYVNRSSSLAAIDYIVSLNS 473
RIY+A GE +GG + L PL + FPNL TKE LA EL+P+ SS LAA+DYIV L S
Sbjct: 204 TRIYLAAGEIYGGERRLDPLRSIFPNLYTKETLATAEELAPFSGHSSRLAALDYIVCLES 263
Query: 474 NVFVPSHGGNMGRAMQGHRAYVGHRK 499
+VFVP++GGN +A+ GHR Y+GHRK
Sbjct: 264 DVFVPTYGGNFAKAVAGHRRYLGHRK 289
|
Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290 |
| >gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase | Back alignment and domain information |
|---|
| >gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 530 | |||
| PF10250 | 351 | O-FucT: GDP-fucose protein O-fucosyltransferase; I | 100.0 | |
| KOG3849 | 386 | consensus GDP-fucose protein O-fucosyltransferase | 98.1 | |
| PF05830 | 321 | NodZ: Nodulation protein Z (NodZ); InterPro: IPR00 | 96.52 |
| >PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=450.02 Aligned_cols=296 Identities=33% Similarity=0.532 Sum_probs=206.8
Q ss_pred EcCchhHHHHHHHHHHHHHHHhcCeEeccccccccccCCCCC-----CCcccchHHHHHhcccceEEeccCChhhhcccc
Q 048096 182 ASGGLNQQRNQIVDAVVIARILEAALVVPVLQVNLIWGDESE-----FSDIFNVKHFKRTLQADVRVVSSLPSTHLMSRQ 256 (530)
Q Consensus 182 ~nGGLNQqR~~IcDaVaVARiLNATLVlP~L~~~s~W~D~S~-----F~DIFD~dhFI~sL~~dVrIVk~LP~~~~~~~~ 256 (530)
+.||+||||.++++||++|++||+|||||.+.....|+|.++ |+++||+++|++.++++|.+.+.+|........
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 789999999999999999999999999999999999999887 999999999999999999999999865433211
Q ss_pred c------------------------------cccCCCC-CCCchhHHHHhHHhhhhc------ceEEEeccCccccCC-C
Q 048096 257 S------------------------------IENQLPY-NISPFWIRARFFKQLNEE------GVLVLKGLDTKLSKN-L 298 (530)
Q Consensus 257 ~------------------------------~~~~vp~-~~sp~~y~~~vlP~L~k~------~VI~l~~~d~RLa~~-l 298 (530)
. ....... ...+.||.++++|.+.++ +|+.|.++..++.++ +
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 0 0111222 466778777799999886 999999999999987 7
Q ss_pred CchhhhhhhhhcccccccchhHHHHHHHHHHHHH-hcCCeEEEeecchhhhHhhhcccCCCChhHHHHHHHHHhhccccc
Q 048096 299 PPDLQKLRCKVAFHALRFAAPIQELGNRLARRMW-IEGPYIALHLRMEKDVWVRTGCLTGLGLEYDEIIAKIRESQPEYL 377 (530)
Q Consensus 299 P~diQrLRCrvnF~ALrF~p~I~~lg~~LV~RmR-~~GpyIALHLR~EkDMlAfsgC~~g~~~~e~~el~~~R~~~~~~~ 377 (530)
+.++|| +|+|+++|+++|++++++|+ ..++|||+|||+|+|| +++|.+++ +...++.+|+.
T Consensus 166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~~----- 227 (351)
T PF10250_consen 166 DRDLQR--------YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRCW----- 227 (351)
T ss_dssp GGGGGG--------G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT-T-------TTTHHHH-----
T ss_pred CccceE--------EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--HhhcccCC---chHHHHHhHhh-----
Confidence 888987 99999999999999999999 7899999999999999 89999954 77888888876
Q ss_pred cCcccCChHhHhhcCCCCCCHHHHHHHHHhcCCCCCceEEEeecccCCccccchhHHhhCCCcccccccCCccccccccc
Q 048096 378 TGKLNMSHIQRRLAGLCPLTASEIARFLKALGAPSSARIYIAGGEPFGGHQALQPLAAEFPNLVTKEMLAQEGELSPYVN 457 (530)
Q Consensus 378 ~~~~~i~~~~rR~~G~CPLTPeEvgl~L~ALGf~~~T~IYlAaGeiyGg~~~L~pL~~~FPnl~tKetLas~eEL~pF~~ 457 (530)
++..+.+...+..|.||++|++++.+++++|+.+.|.||||++++|||.+.|.+|++.||++++|+++.+.+|+++|.+
T Consensus 228 -~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 306 (351)
T PF10250_consen 228 -GKKSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND 306 (351)
T ss_dssp --GGGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-----
T ss_pred -ccccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc
Confidence 2334566677889999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cccccchhheeeecCCceeecCCCCchhhhhhhcccccCCC
Q 048096 458 RSSSLAAIDYIVSLNSNVFVPSHGGNMGRAMQGHRAYVGHR 498 (530)
Q Consensus 458 ~ss~~AALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G~~ 498 (530)
.++|+||++||++||+||+|..++|+.+|+++|.|.|..
T Consensus 307 --~~~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~~ 345 (351)
T PF10250_consen 307 --DQLAMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGKP 345 (351)
T ss_dssp --S--HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSSS
T ss_pred --cchhHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCCC
Confidence 999999999999999999999999999999999999965
|
Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A. |
| >KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 530 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-07 | |
| 3zy2_A | 362 | Putative GDP-fucose protein O-fucosyltransferase; | 6e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 8e-07
Identities = 70/454 (15%), Positives = 133/454 (29%), Gaps = 151/454 (33%)
Query: 40 RSHQRLFTSQNFAIFFLSLLLTFTFLGVSVLNFIQS--YQ-DPPPCSLISPSSQNPLSSN 96
S+ ++ +F IF+L+L + +VL +Q YQ DP S SS L +
Sbjct: 172 LSY-KVQCKMDFKIFWLNLKNCNS--PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 97 SA-----MLFAS----------------------------------------LASSNTYN 111
S L S L+++ T +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 112 ED-DHEPAG---------LANSVLVP---LPAQLVAGN---LS------KEER---EFWQ 146
DH L + LP +++ N LS ++ + W+
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 147 QPGSEGYKPCLDFSLAYRRKSAKISKEKRKFLVVVASGGLNQQRNQIVDAVVIARILEAA 206
+ ++ SL E RK ++ + +
Sbjct: 349 HVNCDKLTTIIESSLNVLE-----PAEYRKMFDRLS-------------------VFPPS 384
Query: 207 LVVP--VLQVNLIWGDESEFSDIFNVKHF-KRTL--QADVRVVSSLPSTHLMSRQSIENQ 261
+P +L + IW D + + V K +L + S+PS +L + +EN+
Sbjct: 385 AHIPTILLSL--IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 262 LPYNISPFWIRARFFKQLNEEGVLVLKGLDTKLSKNLPPDLQKLRCKVAFHALRFAAPIQ 321
+ N + K D+ P Q + H L+ +
Sbjct: 443 YA-------LHRSIVDHYN-----IPKTFDSD-DLIPPYLDQYFYSHIGHH-LKNIEHPE 488
Query: 322 ELGNRLARRM-----WIEGPYIALHLRMEKDVWVRTGCLTGLGLEYDEIIAKIRESQPEY 376
+ L R + ++E +R + W +G + + I ++ P+Y
Sbjct: 489 RM--TLFRMVFLDFRFLEQ-----KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 377 LTGKLNMSHIQRRLAGLCPLTASEIARFLKALGA 410
+R + + I FL +
Sbjct: 542 ----------ERLV--------NAILDFLPKIEE 557
|
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* Length = 362 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 530 | |||
| 4ap5_A | 408 | GDP-fucose protein O-fucosyltransferase 2; GT-B, G | 99.54 | |
| 3zy2_A | 362 | Putative GDP-fucose protein O-fucosyltransferase; | 99.24 | |
| 2hhc_A | 330 | NODZ, nodulation fucosyltransferase NODZ; glycosyl | 97.85 | |
| 2de0_X | 526 | Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran | 97.7 |
| >4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-14 Score=147.04 Aligned_cols=297 Identities=14% Similarity=0.202 Sum_probs=168.4
Q ss_pred cCCcEEEEEE-cC-chhHHHHHHHHHHHHHHHhcCe----EeccccccccccCC------CCCCCcccchHHHHHhcccc
Q 048096 173 EKRKFLVVVA-SG-GLNQQRNQIVDAVVIARILEAA----LVVPVLQVNLIWGD------ESEFSDIFNVKHFKRTLQAD 240 (530)
Q Consensus 173 ~snGYL~V~~-nG-GLNQqR~~IcDaVaVARiLNAT----LVlP~L~~~s~W~D------~S~F~DIFD~dhFI~sL~~d 240 (530)
..++||+-.. .| |.|.||...-.|.++|+.||.| ||||-...-.=|.. .-+|++.||++++. ..
T Consensus 20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~----~~ 95 (408)
T 4ap5_A 20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLN----KN 95 (408)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHH----TT
T ss_pred cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHH----hh
Confidence 5789999975 45 8999999999999999999999 99996643222432 24799999998743 34
Q ss_pred eEEec------cCChhh----------hc-------cccc----cccC-------CCCCCCchhHHH-------------
Q 048096 241 VRVVS------SLPSTH----------LM-------SRQS----IENQ-------LPYNISPFWIRA------------- 273 (530)
Q Consensus 241 VrIVk------~LP~~~----------~~-------~~~~----~~~~-------vp~~~sp~~y~~------------- 273 (530)
|+|+. ++-..+ .. ..+. .... .-+...|.|-..
T Consensus 96 vpVI~meeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~~~ 175 (408)
T 4ap5_A 96 IPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQ 175 (408)
T ss_dssp SCEEEHHHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEEEC
T ss_pred CCeeEHHHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEEEe
Confidence 44441 110000 00 0000 0000 000012233111
Q ss_pred ----HhHHhhhhcc---eEEEeccCccccCCCC-chhhhhhhhhcccccccchhHHHHHHHHHHHHHhcCCeEEEeecch
Q 048096 274 ----RFFKQLNEEG---VLVLKGLDTKLSKNLP-PDLQKLRCKVAFHALRFAAPIQELGNRLARRMWIEGPYIALHLRME 345 (530)
Q Consensus 274 ----~vlP~L~k~~---VI~l~~~d~RLa~~lP-~diQrLRCrvnF~ALrF~p~I~~lg~~LV~RmR~~GpyIALHLR~E 345 (530)
.+.|.+.+.. -+-+..+...|++... .+...+| ..|+|++.|.+.|++.++..- .++|+++|+|.+
T Consensus 176 ~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L-~~~~~~~h~r~~ 249 (408)
T 4ap5_A 176 GSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHL-NSTDDADRIPFQ 249 (408)
T ss_dssp SBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHH-CCCTTTTTCCCC
T ss_pred ecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHh-Ccccceeecccc
Confidence 1123332221 1122222233332211 2222322 479999999999999888765 468999999999
Q ss_pred hhhHhhhcccCCCChhHHHHHHHHHhhccccccCcccCChHhHhhcCCCCCCHHHHHHHHHhcCCCCCceEEEeecccCC
Q 048096 346 KDVWVRTGCLTGLGLEYDEIIAKIRESQPEYLTGKLNMSHIQRRLAGLCPLTASEIARFLKALGAPSSARIYIAGGEPFG 425 (530)
Q Consensus 346 kDMlAfsgC~~g~~~~e~~el~~~R~~~~~~~~~~~~i~~~~rR~~G~CPLTPeEvgl~L~ALGf~~~T~IYlAaGeiyG 425 (530)
.|+... |.......-. . +.--|+..++... -....||-.++-+..+.+.|.=-+-+.||||+-+
T Consensus 250 ~dw~~~--~~~~~~~~~~----~--y~~~H~Rr~d~~~-----~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~--- 313 (408)
T 4ap5_A 250 EDWMKM--KVKLGSALGG----P--YLGVHLRRKDFIW-----GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDA--- 313 (408)
T ss_dssp SSGGGC--CCCTTCBCCE----E--EEEEEECCTTTTT-----TTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECC---
T ss_pred hhHhhh--hcccccccCC----C--ccccccccccchh-----hhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCC---
Confidence 888654 4332110000 0 0000111111100 0112233333333333333322234589999876
Q ss_pred ccccchhHHhhCCCcccccccCCccccccccccccccchhheeeecCCceeecCCCCchhhhhhhcccccCCCc
Q 048096 426 GHQALQPLAAEFPNLVTKEMLAQEGELSPYVNRSSSLAAIDYIVSLNSNVFVPSHGGNMGRAMQGHRAYVGHRK 499 (530)
Q Consensus 426 g~~~L~pL~~~FPnl~tKetLas~eEL~pF~~~ss~~AALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G~~k 499 (530)
.+..+..|++.+|.++.-.. ..+++..+ .....|.||-+||.+||+||+|..++|+..|.=.|.+.|+..
T Consensus 314 ~~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~ 383 (408)
T 4ap5_A 314 VRKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDP 383 (408)
T ss_dssp CHHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCG
T ss_pred chhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCC
Confidence 34557789999987653221 12333333 234578999999999999999999999999999999999864
|
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* | Back alignment and structure |
|---|
| >2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A* | Back alignment and structure |
|---|
| >2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00